Query 014007
Match_columns 432
No_of_seqs 714 out of 3674
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 00:56:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.7E-47 5.8E-52 318.9 26.1 281 78-408 108-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 6E-45 1.3E-49 308.6 21.7 278 82-408 172-458 (459)
3 KOG0286 G-protein beta subunit 100.0 9.5E-43 2.1E-47 282.0 32.1 284 78-408 48-343 (343)
4 KOG2111 Uncharacterized conser 100.0 8E-40 1.7E-44 268.3 34.9 333 87-431 7-343 (346)
5 KOG0279 G protein beta subunit 100.0 9E-40 2E-44 263.1 31.6 296 77-410 7-313 (315)
6 KOG0271 Notchless-like WD40 re 100.0 2.2E-38 4.9E-43 265.5 21.6 274 122-412 109-441 (480)
7 KOG0265 U5 snRNP-specific prot 100.0 3.1E-37 6.6E-42 251.0 26.5 283 78-407 40-335 (338)
8 KOG0272 U4/U6 small nuclear ri 100.0 1E-38 2.2E-43 270.9 18.3 242 76-331 208-458 (459)
9 KOG0315 G-protein beta subunit 100.0 1.2E-36 2.5E-41 241.3 28.8 272 98-421 11-297 (311)
10 KOG0295 WD40 repeat-containing 100.0 6.3E-37 1.4E-41 255.3 27.3 284 77-409 100-405 (406)
11 KOG0273 Beta-transducin family 100.0 3.2E-37 7E-42 265.1 26.0 284 79-411 173-483 (524)
12 KOG0263 Transcription initiati 100.0 6.4E-38 1.4E-42 285.9 22.5 270 85-414 378-653 (707)
13 KOG2110 Uncharacterized conser 100.0 4.8E-35 1E-39 244.9 35.9 336 84-428 4-348 (391)
14 KOG0293 WD40 repeat-containing 100.0 8.1E-37 1.8E-41 258.5 22.3 290 76-411 215-514 (519)
15 KOG0284 Polyadenylation factor 100.0 1.8E-37 4E-42 262.1 17.6 277 85-410 96-380 (464)
16 KOG0273 Beta-transducin family 100.0 2.5E-35 5.3E-40 253.6 30.0 274 85-409 235-522 (524)
17 KOG0315 G-protein beta subunit 100.0 7.6E-36 1.7E-40 236.7 24.8 251 77-339 32-294 (311)
18 KOG0291 WD40-repeat-containing 100.0 1.8E-34 3.9E-39 261.5 35.3 324 78-412 138-510 (893)
19 KOG0285 Pleiotropic regulator 100.0 2.1E-35 4.6E-40 245.7 26.5 304 77-423 143-452 (460)
20 KOG0291 WD40-repeat-containing 100.0 7.7E-35 1.7E-39 263.9 31.4 303 81-413 303-615 (893)
21 KOG0318 WD40 repeat stress pro 100.0 1.7E-34 3.7E-39 251.6 32.3 290 79-411 184-561 (603)
22 KOG0645 WD40 repeat protein [G 100.0 2.5E-34 5.3E-39 230.9 30.3 288 77-409 6-310 (312)
23 cd00200 WD40 WD40 domain, foun 100.0 6.6E-34 1.4E-38 253.1 35.1 280 80-408 4-289 (289)
24 KOG0266 WD40 repeat-containing 100.0 1.3E-34 2.8E-39 270.9 30.8 284 82-410 156-454 (456)
25 KOG0279 G protein beta subunit 100.0 5.2E-34 1.1E-38 230.0 27.5 244 120-412 7-264 (315)
26 KOG0643 Translation initiation 100.0 5.4E-34 1.2E-38 228.5 26.4 297 80-412 5-319 (327)
27 KOG0282 mRNA splicing factor [ 100.0 6.9E-36 1.5E-40 257.9 15.8 284 79-408 208-503 (503)
28 KOG0316 Conserved WD40 repeat- 100.0 1.3E-33 2.8E-38 222.3 25.2 280 77-406 9-296 (307)
29 KOG1407 WD40 repeat protein [F 100.0 9.4E-34 2E-38 226.4 24.4 274 79-401 14-293 (313)
30 KOG0286 G-protein beta subunit 100.0 3.8E-33 8.3E-38 226.4 28.2 254 122-423 49-314 (343)
31 KOG0296 Angio-associated migra 100.0 9.8E-33 2.1E-37 230.5 28.5 282 77-409 56-397 (399)
32 KOG0278 Serine/threonine kinas 100.0 4.6E-34 1E-38 226.7 17.7 286 78-413 7-300 (334)
33 PLN00181 protein SPA1-RELATED; 100.0 5.1E-32 1.1E-36 272.0 36.9 291 81-409 479-792 (793)
34 KOG0281 Beta-TrCP (transducin 100.0 7.8E-35 1.7E-39 241.6 13.3 280 81-412 193-479 (499)
35 KOG0265 U5 snRNP-specific prot 100.0 2.4E-32 5.2E-37 222.6 23.8 245 126-411 44-297 (338)
36 KOG0276 Vesicle coat complex C 100.0 1.5E-32 3.3E-37 244.1 24.4 278 81-406 9-295 (794)
37 KOG0295 WD40 repeat-containing 100.0 5.5E-33 1.2E-37 231.9 18.3 257 122-427 102-379 (406)
38 KOG0319 WD40-repeat-containing 100.0 2.2E-32 4.8E-37 247.6 23.7 282 78-409 316-618 (775)
39 KOG0319 WD40-repeat-containing 100.0 5.1E-32 1.1E-36 245.3 25.4 283 81-411 101-578 (775)
40 KOG0318 WD40 repeat stress pro 100.0 1.8E-30 4E-35 226.6 32.8 304 90-412 23-352 (603)
41 KOG0263 Transcription initiati 100.0 6.6E-32 1.4E-36 246.8 24.7 266 108-398 433-703 (707)
42 KOG0306 WD40-repeat-containing 100.0 2.5E-31 5.5E-36 241.1 25.4 281 79-411 367-665 (888)
43 KOG0284 Polyadenylation factor 100.0 9.3E-33 2E-37 233.7 13.2 243 79-334 132-381 (464)
44 KOG0266 WD40 repeat-containing 100.0 2.3E-30 4.9E-35 242.3 28.8 255 123-423 153-420 (456)
45 KOG1446 Histone H3 (Lys4) meth 100.0 1.3E-28 2.8E-33 202.7 34.8 277 84-411 13-304 (311)
46 KOG0296 Angio-associated migra 100.0 2.4E-30 5.1E-35 216.3 24.9 244 78-333 99-398 (399)
47 KOG0292 Vesicle coat complex C 100.0 1.6E-30 3.6E-35 239.7 26.3 279 83-411 7-322 (1202)
48 KOG0310 Conserved WD40 repeat- 100.0 8.7E-30 1.9E-34 220.7 27.7 275 84-407 25-306 (487)
49 KOG0277 Peroxisomal targeting 100.0 9.5E-31 2.1E-35 208.4 20.0 274 89-408 12-307 (311)
50 KOG0275 Conserved WD40 repeat- 100.0 5.1E-31 1.1E-35 217.1 17.9 284 80-408 208-507 (508)
51 KOG0316 Conserved WD40 repeat- 100.0 3.3E-30 7.3E-35 203.1 21.3 235 127-411 15-258 (307)
52 KOG0288 WD40 repeat protein Ti 100.0 4.1E-31 8.8E-36 224.2 17.2 283 78-408 168-459 (459)
53 KOG0285 Pleiotropic regulator 100.0 1.8E-30 3.9E-35 216.4 20.7 241 122-411 145-390 (460)
54 KOG0283 WD40 repeat-containing 100.0 5.8E-30 1.3E-34 236.0 25.4 286 79-413 261-579 (712)
55 KOG0276 Vesicle coat complex C 100.0 1.9E-30 4.1E-35 230.9 20.9 239 127-411 11-258 (794)
56 KOG0645 WD40 repeat protein [G 100.0 9E-29 1.9E-33 199.0 28.2 236 122-410 8-261 (312)
57 KOG0292 Vesicle coat complex C 100.0 2.8E-30 6E-35 238.3 21.3 256 127-424 7-294 (1202)
58 KOG0313 Microtubule binding pr 100.0 3.9E-29 8.4E-34 210.0 25.2 285 74-411 94-419 (423)
59 KOG0306 WD40-repeat-containing 100.0 1.2E-28 2.6E-33 223.8 28.0 283 77-411 99-581 (888)
60 KOG0305 Anaphase promoting com 100.0 8.6E-29 1.9E-33 222.5 26.6 274 89-413 181-464 (484)
61 KOG0281 Beta-TrCP (transducin 100.0 7E-31 1.5E-35 218.2 11.9 227 128-412 196-430 (499)
62 KOG0282 mRNA splicing factor [ 100.0 6.9E-30 1.5E-34 220.9 18.4 247 122-411 208-463 (503)
63 KOG0268 Sof1-like rRNA process 100.0 1.6E-30 3.4E-35 217.1 13.4 284 79-412 60-347 (433)
64 KOG0772 Uncharacterized conser 100.0 1.5E-28 3.3E-33 214.1 25.6 287 79-411 161-487 (641)
65 KOG0289 mRNA splicing factor [ 100.0 4.7E-28 1E-32 206.9 27.1 279 85-409 219-505 (506)
66 KOG2096 WD40 repeat protein [G 100.0 8.9E-28 1.9E-32 197.6 24.6 288 75-408 76-400 (420)
67 KOG0973 Histone transcription 100.0 6.6E-28 1.4E-32 228.2 26.9 290 80-415 8-360 (942)
68 KOG0641 WD40 repeat protein [G 100.0 4.2E-26 9.1E-31 179.1 32.2 283 84-410 31-349 (350)
69 cd00200 WD40 WD40 domain, foun 100.0 4.3E-27 9.4E-32 209.1 30.4 239 79-331 45-289 (289)
70 KOG0274 Cdc4 and related F-box 100.0 1E-27 2.2E-32 223.7 27.2 272 83-411 206-483 (537)
71 KOG0640 mRNA cleavage stimulat 100.0 4.1E-28 8.8E-33 198.9 20.9 289 78-410 105-426 (430)
72 KOG0293 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 209.0 17.8 243 78-335 262-515 (519)
73 KOG0639 Transducin-like enhanc 100.0 1.3E-27 2.9E-32 207.7 24.3 281 80-409 414-703 (705)
74 PLN00181 protein SPA1-RELATED; 100.0 6.4E-27 1.4E-31 235.3 32.6 261 108-410 460-738 (793)
75 KOG0305 Anaphase promoting com 100.0 2.9E-27 6.2E-32 212.8 24.2 245 80-336 212-464 (484)
76 KOG0278 Serine/threonine kinas 100.0 4.1E-28 8.8E-33 193.0 14.8 243 78-336 52-300 (334)
77 KOG1407 WD40 repeat protein [F 100.0 9.2E-27 2E-31 186.5 22.2 246 127-421 18-270 (313)
78 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-25 2.4E-30 185.5 29.2 253 122-422 8-272 (311)
79 PTZ00420 coronin; Provisional 100.0 1.8E-25 3.9E-30 209.4 34.4 223 146-412 49-295 (568)
80 KOG0310 Conserved WD40 repeat- 100.0 2.2E-27 4.7E-32 205.9 19.4 235 128-410 25-268 (487)
81 KOG0299 U3 snoRNP-associated p 100.0 3.3E-26 7.1E-31 197.2 26.3 290 78-409 135-455 (479)
82 KOG0647 mRNA export protein (c 100.0 5.5E-26 1.2E-30 185.8 25.7 274 76-398 18-311 (347)
83 PTZ00421 coronin; Provisional 100.0 1.4E-25 3.1E-30 209.2 31.9 243 84-337 19-294 (493)
84 KOG0294 WD40 repeat-containing 100.0 4.5E-26 9.8E-31 187.3 23.4 239 80-337 38-285 (362)
85 KOG1036 Mitotic spindle checkp 100.0 1.9E-25 4.1E-30 183.3 26.3 270 79-400 7-294 (323)
86 KOG0277 Peroxisomal targeting 100.0 9.1E-27 2E-31 185.8 17.7 238 83-332 58-308 (311)
87 PTZ00421 coronin; Provisional 100.0 3.2E-25 7E-30 206.9 31.0 200 174-411 74-291 (493)
88 KOG0973 Histone transcription 100.0 3E-26 6.5E-31 217.0 23.7 253 76-336 60-358 (942)
89 KOG0288 WD40 repeat protein Ti 99.9 1.4E-26 3.1E-31 196.7 18.7 238 78-330 212-458 (459)
90 KOG1408 WD40 repeat protein [F 99.9 5.4E-26 1.2E-30 205.7 23.5 242 128-411 458-714 (1080)
91 KOG0275 Conserved WD40 repeat- 99.9 1E-26 2.2E-31 191.9 17.2 243 127-411 211-468 (508)
92 KOG2055 WD40 repeat protein [G 99.9 6.3E-26 1.4E-30 195.4 22.4 284 81-409 209-511 (514)
93 KOG0300 WD40 repeat-containing 99.9 7.8E-26 1.7E-30 186.2 22.0 287 79-412 142-478 (481)
94 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 207.0 18.7 275 90-411 29-328 (735)
95 KOG0294 WD40 repeat-containing 99.9 8.5E-25 1.8E-29 179.9 27.1 238 127-415 41-286 (362)
96 KOG0301 Phospholipase A2-activ 99.9 2.7E-25 5.8E-30 200.6 24.9 276 79-411 8-289 (745)
97 KOG0289 mRNA splicing factor [ 99.9 2.1E-25 4.6E-30 190.7 22.5 233 130-408 220-460 (506)
98 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-23 3.8E-28 187.9 35.8 273 98-421 2-288 (300)
99 KOG0646 WD40 repeat protein [G 99.9 4.1E-25 8.8E-30 190.8 23.5 272 105-411 16-308 (476)
100 PTZ00420 coronin; Provisional 99.9 4.7E-24 1E-28 200.0 32.4 217 107-336 55-296 (568)
101 KOG2106 Uncharacterized conser 99.9 1E-23 2.2E-28 183.8 31.8 288 78-422 147-488 (626)
102 KOG0274 Cdc4 and related F-box 99.9 6.3E-25 1.4E-29 205.1 25.5 239 80-339 244-488 (537)
103 KOG0269 WD40 repeat-containing 99.9 1.3E-25 2.8E-30 205.0 19.6 280 85-409 39-339 (839)
104 KOG1332 Vesicle coat complex C 99.9 1.9E-25 4E-30 177.4 18.1 245 127-412 9-288 (299)
105 KOG4283 Transcription-coupled 99.9 1.6E-24 3.5E-29 176.6 23.9 294 75-412 33-367 (397)
106 KOG0313 Microtubule binding pr 99.9 8.4E-25 1.8E-29 184.1 22.7 238 128-413 104-379 (423)
107 KOG0264 Nucleosome remodeling 99.9 5.9E-25 1.3E-29 189.4 22.3 251 76-335 115-406 (422)
108 KOG1273 WD40 repeat protein [G 99.9 9.1E-25 2E-29 179.7 21.4 275 88-411 26-323 (405)
109 KOG0643 Translation initiation 99.9 5.8E-24 1.3E-28 171.1 25.4 231 127-401 8-252 (327)
110 KOG0772 Uncharacterized conser 99.9 7.1E-25 1.5E-29 191.5 20.3 245 122-408 161-443 (641)
111 KOG1274 WD40 repeat protein [G 99.9 8.8E-24 1.9E-28 196.7 28.2 276 80-407 8-297 (933)
112 KOG1063 RNA polymerase II elon 99.9 3.5E-24 7.6E-29 193.4 24.6 293 79-412 261-650 (764)
113 KOG0308 Conserved WD40 repeat- 99.9 4.8E-25 1E-29 197.6 17.7 229 139-412 35-287 (735)
114 KOG0650 WD40 repeat nucleolar 99.9 3.7E-24 8E-29 190.2 22.4 295 76-407 391-732 (733)
115 KOG0264 Nucleosome remodeling 99.9 5.5E-24 1.2E-28 183.5 22.7 253 127-410 122-404 (422)
116 KOG1539 WD repeat protein [Gen 99.9 1.2E-22 2.6E-27 187.3 31.9 313 87-412 161-608 (910)
117 KOG1332 Vesicle coat complex C 99.9 1.4E-24 2.9E-29 172.5 16.0 248 78-334 4-287 (299)
118 KOG0647 mRNA export protein (c 99.9 1.8E-23 3.9E-28 171.1 23.0 244 126-412 24-283 (347)
119 KOG1539 WD repeat protein [Gen 99.9 2.6E-23 5.6E-28 191.5 26.6 191 176-408 449-646 (910)
120 KOG0640 mRNA cleavage stimulat 99.9 1.8E-24 3.9E-29 177.6 15.1 208 127-344 110-346 (430)
121 KOG0641 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 155.7 28.0 242 128-411 31-304 (350)
122 KOG0299 U3 snoRNP-associated p 99.9 2.4E-23 5.1E-28 179.6 21.9 250 127-412 140-412 (479)
123 KOG1036 Mitotic spindle checkp 99.9 4.9E-23 1.1E-27 169.2 22.2 242 127-411 11-263 (323)
124 KOG0283 WD40 repeat-containing 99.9 6.8E-24 1.5E-28 196.2 19.2 243 123-409 261-531 (712)
125 KOG0268 Sof1-like rRNA process 99.9 3.1E-24 6.7E-29 179.7 15.2 244 77-339 101-351 (433)
126 KOG0267 Microtubule severing p 99.9 4E-25 8.6E-30 200.4 9.7 241 108-403 16-261 (825)
127 KOG2445 Nuclear pore complex c 99.9 5.2E-22 1.1E-26 163.1 26.7 270 124-418 8-326 (361)
128 KOG1274 WD40 repeat protein [G 99.9 1.6E-22 3.4E-27 188.4 24.9 243 127-411 11-263 (933)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-21 8.3E-26 172.7 33.3 235 87-337 32-283 (300)
130 KOG0639 Transducin-like enhanc 99.9 1.5E-23 3.3E-28 182.6 16.1 235 84-332 464-703 (705)
131 KOG2106 Uncharacterized conser 99.9 1.6E-20 3.4E-25 164.1 34.0 304 85-409 246-625 (626)
132 KOG2048 WD40 repeat protein [G 99.9 2.7E-21 5.8E-26 174.6 29.6 282 80-409 20-318 (691)
133 KOG0300 WD40 repeat-containing 99.9 1.7E-22 3.8E-27 166.6 20.1 255 109-411 129-429 (481)
134 KOG1408 WD40 repeat protein [F 99.9 2E-22 4.4E-27 182.7 22.0 290 89-422 328-681 (1080)
135 KOG2919 Guanine nucleotide-bin 99.9 9.6E-22 2.1E-26 162.6 23.1 274 84-401 48-361 (406)
136 KOG4378 Nuclear protein COP1 [ 99.9 4E-22 8.7E-27 173.6 21.2 258 86-392 35-305 (673)
137 KOG2048 WD40 repeat protein [G 99.9 3E-21 6.4E-26 174.4 27.0 242 128-414 24-279 (691)
138 KOG0646 WD40 repeat protein [G 99.9 2E-22 4.4E-27 174.3 18.7 234 98-341 51-315 (476)
139 KOG0301 Phospholipase A2-activ 99.9 8.2E-22 1.8E-26 178.3 22.5 234 79-336 51-291 (745)
140 KOG0321 WD40 repeat-containing 99.9 8.7E-22 1.9E-26 176.5 21.6 280 89-411 53-392 (720)
141 KOG0302 Ribosome Assembly prot 99.9 5.4E-22 1.2E-26 167.2 18.6 206 174-414 150-382 (440)
142 KOG1034 Transcriptional repres 99.9 2.9E-21 6.4E-26 160.0 21.8 286 78-409 31-382 (385)
143 KOG2445 Nuclear pore complex c 99.9 4.9E-21 1.1E-25 157.4 22.4 246 79-335 7-320 (361)
144 KOG4328 WD40 protein [Function 99.9 3.6E-21 7.8E-26 166.2 22.7 287 78-409 179-494 (498)
145 KOG2055 WD40 repeat protein [G 99.9 1.9E-21 4E-26 168.1 19.7 244 81-333 253-512 (514)
146 KOG1445 Tumor-specific antigen 99.9 1E-21 2.2E-26 176.0 17.4 112 260-409 629-749 (1012)
147 KOG1063 RNA polymerase II elon 99.9 6E-21 1.3E-25 172.7 22.3 302 76-410 352-763 (764)
148 KOG0267 Microtubule severing p 99.9 8.2E-23 1.8E-27 185.5 9.2 233 79-325 22-260 (825)
149 KOG0322 G-protein beta subunit 99.9 3.6E-21 7.8E-26 154.9 17.4 283 78-409 7-322 (323)
150 KOG2096 WD40 repeat protein [G 99.9 6.5E-21 1.4E-25 157.4 18.9 221 157-411 62-309 (420)
151 KOG4227 WD40 repeat protein [G 99.9 2.9E-20 6.2E-25 157.7 23.0 308 78-409 49-386 (609)
152 KOG1538 Uncharacterized conser 99.9 9.7E-21 2.1E-25 170.8 21.3 271 87-411 14-294 (1081)
153 KOG0270 WD40 repeat-containing 99.9 8.7E-21 1.9E-25 163.3 20.0 240 89-337 177-453 (463)
154 KOG0650 WD40 repeat nucleolar 99.9 3.6E-21 7.7E-26 171.4 18.1 241 126-409 397-679 (733)
155 KOG0302 Ribosome Assembly prot 99.9 2.5E-20 5.5E-25 157.2 21.9 249 128-405 150-434 (440)
156 KOG0269 WD40 repeat-containing 99.9 1.5E-21 3.2E-26 178.8 14.8 233 133-411 43-297 (839)
157 KOG1273 WD40 repeat protein [G 99.9 5.6E-20 1.2E-24 151.7 22.5 246 132-411 26-281 (405)
158 KOG4283 Transcription-coupled 99.9 2.5E-19 5.5E-24 146.6 23.7 203 127-337 41-280 (397)
159 KOG0307 Vesicle coat complex C 99.9 3.5E-21 7.6E-26 183.8 14.5 244 84-336 63-330 (1049)
160 PRK11028 6-phosphogluconolacto 99.9 3.3E-18 7.3E-23 155.3 33.2 270 103-415 9-309 (330)
161 KOG1009 Chromatin assembly com 99.9 4.8E-19 1E-23 151.0 25.2 286 84-415 12-377 (434)
162 KOG4378 Nuclear protein COP1 [ 99.9 6.3E-20 1.4E-24 160.1 19.2 266 99-412 5-282 (673)
163 KOG0270 WD40 repeat-containing 99.8 4.8E-19 1E-23 152.6 22.3 229 140-411 191-450 (463)
164 KOG1007 WD repeat protein TSSC 99.8 4.7E-19 1E-23 144.6 20.7 303 97-411 26-362 (370)
165 KOG0307 Vesicle coat complex C 99.8 1.3E-20 2.9E-25 179.9 12.6 276 90-411 11-328 (1049)
166 KOG1188 WD40 repeat protein [G 99.8 3.6E-19 7.9E-24 148.5 19.0 271 98-411 41-347 (376)
167 KOG2919 Guanine nucleotide-bin 99.8 6.9E-19 1.5E-23 145.8 20.2 234 132-411 52-328 (406)
168 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.6E-21 150.6 37.0 288 80-413 60-362 (466)
169 KOG4328 WD40 protein [Function 99.8 1.6E-18 3.4E-23 150.1 19.5 242 127-408 184-448 (498)
170 KOG1524 WD40 repeat-containing 99.8 7.5E-19 1.6E-23 154.9 17.3 258 82-406 11-282 (737)
171 KOG0321 WD40 repeat-containing 99.8 1.9E-18 4.1E-23 155.3 19.4 246 79-336 94-394 (720)
172 KOG0290 Conserved WD40 repeat- 99.8 3.2E-17 7E-22 134.1 23.0 278 85-406 44-361 (364)
173 KOG1009 Chromatin assembly com 99.8 1.2E-17 2.7E-22 142.5 21.3 249 78-336 58-375 (434)
174 PRK01742 tolB translocation pr 99.8 1E-16 2.2E-21 150.1 29.7 219 156-422 184-413 (429)
175 KOG1007 WD repeat protein TSSC 99.8 5.8E-18 1.3E-22 138.3 18.3 247 77-334 55-362 (370)
176 KOG1538 Uncharacterized conser 99.8 6E-18 1.3E-22 153.0 17.9 245 71-333 39-293 (1081)
177 KOG0644 Uncharacterized conser 99.8 7.2E-19 1.6E-23 162.6 11.4 290 79-427 184-483 (1113)
178 KOG1963 WD40 repeat protein [G 99.8 2.3E-16 5E-21 147.3 27.4 295 79-411 199-539 (792)
179 KOG0290 Conserved WD40 repeat- 99.8 3.6E-17 7.7E-22 133.8 18.9 237 82-329 93-361 (364)
180 KOG4497 Uncharacterized conser 99.8 5.8E-17 1.3E-21 134.9 20.4 273 91-409 14-390 (447)
181 PRK03629 tolB translocation pr 99.8 2.5E-15 5.4E-20 140.4 34.1 213 156-409 179-405 (429)
182 KOG1034 Transcriptional repres 99.8 2.2E-17 4.7E-22 137.3 17.4 239 82-334 86-384 (385)
183 KOG1517 Guanine nucleotide bin 99.8 5.8E-17 1.3E-21 153.8 22.4 290 82-411 1061-1382(1387)
184 PRK11028 6-phosphogluconolacto 99.8 5.4E-16 1.2E-20 140.8 28.3 236 86-334 35-305 (330)
185 KOG2110 Uncharacterized conser 99.8 7E-16 1.5E-20 130.5 26.5 236 129-413 5-251 (391)
186 PRK04922 tolB translocation pr 99.8 4.9E-16 1.1E-20 145.8 26.6 216 156-412 184-411 (433)
187 KOG0771 Prolactin regulatory e 99.8 2.4E-17 5.3E-22 141.6 15.9 197 133-336 148-357 (398)
188 KOG0303 Actin-binding protein 99.8 3E-16 6.4E-21 133.7 22.0 214 126-412 78-296 (472)
189 KOG1587 Cytoplasmic dynein int 99.8 1.7E-16 3.7E-21 147.7 22.4 259 107-411 223-517 (555)
190 PRK05137 tolB translocation pr 99.8 2.5E-15 5.4E-20 141.2 30.4 214 156-412 182-412 (435)
191 KOG1272 WD40-repeat-containing 99.8 1.5E-17 3.3E-22 144.3 13.5 228 85-332 129-361 (545)
192 COG2319 FOG: WD40 repeat [Gene 99.7 6.3E-15 1.4E-19 138.8 31.9 239 127-410 63-314 (466)
193 KOG1963 WD40 repeat protein [G 99.7 3E-15 6.4E-20 140.1 28.0 283 90-411 21-376 (792)
194 KOG2321 WD40 repeat protein [G 99.7 7.1E-16 1.5E-20 137.5 22.3 290 82-428 48-357 (703)
195 KOG0642 Cell-cycle nuclear pro 99.7 4E-17 8.7E-22 145.1 14.1 247 80-339 289-567 (577)
196 KOG0303 Actin-binding protein 99.7 6.9E-16 1.5E-20 131.5 20.7 231 77-314 73-320 (472)
197 KOG2394 WD40 protein DMR-N9 [G 99.7 2.6E-16 5.7E-21 139.1 18.8 238 87-349 125-378 (636)
198 PRK01742 tolB translocation pr 99.7 4.4E-16 9.5E-21 145.8 21.7 232 107-391 185-426 (429)
199 PRK03629 tolB translocation pr 99.7 3.4E-15 7.4E-20 139.5 25.3 211 108-335 181-408 (429)
200 KOG0649 WD40 repeat protein [G 99.7 9.3E-15 2E-19 116.9 23.4 197 131-339 12-241 (325)
201 KOG2315 Predicted translation 99.7 1.6E-14 3.6E-19 128.7 27.0 291 88-427 37-413 (566)
202 PF02239 Cytochrom_D1: Cytochr 99.7 5.6E-14 1.2E-18 127.4 30.3 276 98-421 6-356 (369)
203 PRK02889 tolB translocation pr 99.7 1.8E-14 3.9E-19 134.8 27.4 211 156-411 176-402 (427)
204 KOG1334 WD40 repeat protein [G 99.7 3E-16 6.6E-21 137.1 13.8 286 79-409 136-465 (559)
205 TIGR02800 propeller_TolB tol-p 99.7 4.1E-14 8.9E-19 133.1 29.5 223 156-420 170-404 (417)
206 PRK04922 tolB translocation pr 99.7 5.2E-15 1.1E-19 138.9 23.2 214 108-335 186-413 (433)
207 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-16 7.5E-21 139.2 14.1 241 127-411 292-562 (577)
208 KOG1523 Actin-related protein 99.7 6.2E-15 1.3E-19 122.5 20.1 221 84-316 9-262 (361)
209 KOG4227 WD40 repeat protein [G 99.7 3E-15 6.5E-20 127.5 18.6 252 120-411 48-323 (609)
210 KOG1188 WD40 repeat protein [G 99.7 9.9E-16 2.1E-20 128.2 15.4 185 192-412 48-244 (376)
211 KOG1524 WD40 repeat-containing 99.7 8.3E-16 1.8E-20 135.9 15.3 206 99-333 78-286 (737)
212 KOG0649 WD40 repeat protein [G 99.7 8E-14 1.7E-18 111.6 24.8 226 87-334 12-275 (325)
213 KOG4497 Uncharacterized conser 99.7 1.7E-16 3.6E-21 132.2 9.7 218 134-408 13-238 (447)
214 PF08662 eIF2A: Eukaryotic tra 99.7 6.3E-15 1.4E-19 121.5 18.8 162 219-426 10-192 (194)
215 PRK05137 tolB translocation pr 99.7 2.7E-14 5.8E-19 134.3 24.5 217 108-336 184-415 (435)
216 KOG1445 Tumor-specific antigen 99.7 2.8E-14 6E-19 128.9 23.1 177 156-336 603-801 (1012)
217 KOG1523 Actin-related protein 99.7 1E-14 2.2E-19 121.3 18.6 213 174-408 9-234 (361)
218 PF08662 eIF2A: Eukaryotic tra 99.7 9.3E-15 2E-19 120.4 18.5 148 179-334 9-180 (194)
219 PRK02889 tolB translocation pr 99.7 4.1E-14 8.9E-19 132.4 24.5 211 108-332 178-402 (427)
220 KOG2139 WD40 repeat protein [G 99.7 5.9E-14 1.3E-18 118.6 22.6 286 81-412 94-433 (445)
221 PF10282 Lactonase: Lactonase, 99.7 1.6E-11 3.5E-16 111.6 40.2 274 106-416 13-328 (345)
222 KOG0322 G-protein beta subunit 99.7 1.1E-14 2.3E-19 117.9 16.6 234 83-332 54-322 (323)
223 PRK00178 tolB translocation pr 99.6 7.7E-13 1.7E-17 124.6 31.7 214 157-412 180-406 (430)
224 KOG1272 WD40-repeat-containing 99.6 1.3E-15 2.7E-20 132.5 10.0 197 129-338 129-328 (545)
225 KOG2111 Uncharacterized conser 99.6 1.6E-13 3.4E-18 114.2 21.8 234 131-414 7-260 (346)
226 KOG1587 Cytoplasmic dynein int 99.6 3.5E-14 7.7E-19 132.4 19.9 245 80-335 237-518 (555)
227 KOG1240 Protein kinase contain 99.6 1.1E-13 2.4E-18 133.9 23.5 320 79-408 1042-1431(1431)
228 KOG0771 Prolactin regulatory e 99.6 8.9E-15 1.9E-19 126.0 14.5 197 179-413 148-357 (398)
229 KOG2139 WD40 repeat protein [G 99.6 5.3E-13 1.2E-17 112.9 24.4 247 80-334 135-432 (445)
230 COG5354 Uncharacterized protei 99.6 1.3E-12 2.9E-17 115.4 26.3 329 84-424 31-409 (561)
231 PRK04792 tolB translocation pr 99.6 1.6E-12 3.6E-17 122.0 27.8 177 156-336 198-385 (448)
232 KOG1310 WD40 repeat protein [G 99.6 2.9E-14 6.2E-19 126.7 14.3 209 122-339 44-309 (758)
233 PF10282 Lactonase: Lactonase, 99.6 3.5E-11 7.7E-16 109.4 35.0 241 85-334 36-323 (345)
234 KOG1517 Guanine nucleotide bin 99.6 1.8E-13 4E-18 130.5 20.1 243 82-336 1106-1384(1387)
235 TIGR02800 propeller_TolB tol-p 99.6 1.1E-12 2.3E-17 123.6 24.5 213 108-332 172-396 (417)
236 KOG0644 Uncharacterized conser 99.6 7.2E-15 1.6E-19 136.5 9.3 237 127-419 188-435 (1113)
237 PRK00178 tolB translocation pr 99.6 1.9E-12 4E-17 122.0 25.4 215 108-334 181-407 (430)
238 PRK04792 tolB translocation pr 99.6 2.4E-12 5.2E-17 120.9 24.6 215 108-333 200-425 (448)
239 KOG3881 Uncharacterized conser 99.6 1E-12 2.2E-17 112.4 19.6 244 83-338 53-325 (412)
240 KOG1354 Serine/threonine prote 99.6 5.8E-13 1.3E-17 112.0 17.9 244 84-336 24-362 (433)
241 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-13 4.4E-18 121.1 15.9 221 95-339 183-458 (636)
242 KOG0974 WD-repeat protein WDR6 99.5 3.2E-13 6.9E-18 128.9 17.0 195 176-411 88-289 (967)
243 COG2706 3-carboxymuconate cycl 99.5 1.2E-10 2.5E-15 99.5 30.4 275 105-415 15-326 (346)
244 KOG2315 Predicted translation 99.5 2.7E-12 5.8E-17 114.8 21.4 132 195-335 252-392 (566)
245 PRK01029 tolB translocation pr 99.5 9E-12 1.9E-16 116.1 26.1 216 108-336 167-406 (428)
246 KOG2314 Translation initiation 99.5 8.9E-12 1.9E-16 111.3 24.1 294 87-422 212-537 (698)
247 KOG1310 WD40 repeat protein [G 99.5 1.5E-13 3.3E-18 122.2 13.0 211 76-296 41-310 (758)
248 COG2706 3-carboxymuconate cycl 99.5 1E-10 2.2E-15 99.9 29.4 249 81-336 35-324 (346)
249 PRK01029 tolB translocation pr 99.5 7.7E-12 1.7E-16 116.5 25.1 219 156-414 165-405 (428)
250 PF02239 Cytochrom_D1: Cytochr 99.5 5.8E-12 1.3E-16 114.3 22.9 237 89-339 40-353 (369)
251 TIGR02658 TTQ_MADH_Hv methylam 99.5 3.1E-10 6.7E-15 100.8 32.2 259 106-420 27-338 (352)
252 KOG3881 Uncharacterized conser 99.5 9.5E-12 2.1E-16 106.6 19.9 238 128-411 54-321 (412)
253 KOG1334 WD40 repeat protein [G 99.5 1.1E-12 2.4E-17 115.2 14.5 253 127-409 140-423 (559)
254 PRK04043 tolB translocation pr 99.5 1.5E-10 3.2E-15 107.3 29.4 213 156-413 169-401 (419)
255 KOG2041 WD40 repeat protein [G 99.5 1.7E-11 3.6E-16 112.9 22.4 287 83-412 12-339 (1189)
256 KOG1409 Uncharacterized conser 99.5 2.1E-11 4.6E-16 102.8 20.2 246 77-338 16-275 (404)
257 KOG0280 Uncharacterized conser 99.5 3.2E-11 7E-16 99.6 20.7 259 108-408 48-331 (339)
258 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.8E-10 1.3E-14 99.1 29.3 237 93-340 53-337 (352)
259 KOG2321 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 110.1 18.5 213 170-425 46-315 (703)
260 KOG1240 Protein kinase contain 99.4 4.6E-11 1E-15 116.2 22.4 267 122-413 1042-1337(1431)
261 PF04762 IKI3: IKI3 family; I 99.4 2.9E-09 6.4E-14 107.3 32.7 315 82-413 72-459 (928)
262 KOG4547 WD40 repeat-containing 99.4 9.4E-11 2E-15 105.9 18.7 207 139-412 3-222 (541)
263 PLN02919 haloacid dehalogenase 99.4 4.6E-09 1E-13 107.9 33.4 247 134-412 572-890 (1057)
264 PRK04043 tolB translocation pr 99.3 2.3E-09 4.9E-14 99.4 26.2 192 131-335 189-402 (419)
265 PLN02919 haloacid dehalogenase 99.3 1.4E-08 3.1E-13 104.4 34.2 239 89-337 571-892 (1057)
266 COG5354 Uncharacterized protei 99.3 2E-09 4.3E-14 95.7 23.6 236 90-336 136-398 (561)
267 COG4946 Uncharacterized protei 99.3 5E-09 1.1E-13 92.5 25.4 184 138-336 275-480 (668)
268 KOG1064 RAVE (regulator of V-A 99.3 2.2E-11 4.9E-16 122.4 12.1 192 130-342 2209-2407(2439)
269 KOG4547 WD40 repeat-containing 99.3 7.5E-10 1.6E-14 100.1 20.4 184 95-289 3-220 (541)
270 KOG1354 Serine/threonine prote 99.3 2.3E-10 5E-15 96.6 14.6 257 128-415 24-364 (433)
271 PF08450 SGL: SMP-30/Gluconola 99.3 7.7E-08 1.7E-12 83.4 31.0 220 134-399 4-244 (246)
272 TIGR03300 assembly_YfgL outer 99.2 1.8E-08 3.8E-13 93.5 28.2 265 97-421 65-347 (377)
273 KOG2314 Translation initiation 99.2 3.5E-09 7.6E-14 95.1 20.9 237 90-334 310-574 (698)
274 KOG1409 Uncharacterized conser 99.2 1.4E-09 3E-14 92.0 17.4 199 79-289 62-270 (404)
275 COG4946 Uncharacterized protei 99.2 1.6E-08 3.4E-13 89.4 24.3 173 96-278 331-508 (668)
276 KOG0309 Conserved WD40 repeat- 99.2 1.1E-10 2.4E-15 107.9 11.3 290 84-412 23-341 (1081)
277 TIGR03300 assembly_YfgL outer 99.2 4.3E-08 9.3E-13 90.9 28.8 217 96-336 104-341 (377)
278 PF04762 IKI3: IKI3 family; I 99.2 1.1E-07 2.4E-12 96.1 32.4 283 85-409 21-378 (928)
279 KOG0280 Uncharacterized conser 99.2 4.9E-09 1.1E-13 86.9 17.6 176 156-336 46-244 (339)
280 KOG0974 WD-repeat protein WDR6 99.1 1.3E-09 2.7E-14 104.9 15.3 173 156-336 109-291 (967)
281 KOG4190 Uncharacterized conser 99.1 1.9E-10 4.2E-15 103.0 8.9 274 122-406 729-1032(1034)
282 PF08450 SGL: SMP-30/Gluconola 99.1 4.7E-07 1E-11 78.5 29.9 212 90-322 4-244 (246)
283 KOG3914 WD repeat protein WDR4 99.1 2.2E-09 4.7E-14 92.8 14.0 160 179-342 66-232 (390)
284 COG5170 CDC55 Serine/threonine 99.1 8.7E-09 1.9E-13 86.2 15.1 240 83-333 24-367 (460)
285 PF07433 DUF1513: Protein of u 99.0 5.4E-07 1.2E-11 77.5 25.2 232 86-327 5-279 (305)
286 PF15492 Nbas_N: Neuroblastoma 99.0 1.1E-06 2.3E-11 73.5 25.4 227 91-338 3-264 (282)
287 PF15492 Nbas_N: Neuroblastoma 99.0 1E-06 2.3E-11 73.5 25.1 221 180-411 2-260 (282)
288 PF07433 DUF1513: Protein of u 99.0 6.3E-07 1.4E-11 77.1 24.6 199 133-337 8-251 (305)
289 KOG1912 WD40 repeat protein [G 99.0 4.5E-08 9.6E-13 91.7 18.4 235 88-336 18-307 (1062)
290 KOG4532 WD40-like repeat conta 99.0 2.9E-07 6.4E-12 75.7 21.0 234 140-411 83-332 (344)
291 KOG2041 WD40 repeat protein [G 99.0 5.2E-08 1.1E-12 90.5 18.5 236 73-321 59-326 (1189)
292 KOG1912 WD40 repeat protein [G 99.0 2.7E-07 5.8E-12 86.6 22.5 103 272-410 439-551 (1062)
293 KOG4532 WD40-like repeat conta 99.0 3.7E-07 7.9E-12 75.1 20.6 189 193-417 93-287 (344)
294 KOG1064 RAVE (regulator of V-A 99.0 4.9E-09 1.1E-13 106.2 11.7 195 81-299 2204-2408(2439)
295 COG5170 CDC55 Serine/threonine 98.9 2.1E-08 4.6E-13 83.9 13.1 254 128-412 25-369 (460)
296 PRK11138 outer membrane biogen 98.9 1.2E-06 2.6E-11 81.6 26.6 221 98-337 70-316 (394)
297 PF13360 PQQ_2: PQQ-like domai 98.9 3.7E-06 8.1E-11 72.6 27.7 213 156-417 3-235 (238)
298 PF13360 PQQ_2: PQQ-like domai 98.9 2.6E-06 5.6E-11 73.6 26.4 213 106-336 3-233 (238)
299 PF06433 Me-amine-dh_H: Methyl 98.9 1.4E-06 3E-11 75.9 23.6 241 90-339 40-326 (342)
300 KOG4714 Nucleoporin [Nuclear s 98.9 6.5E-08 1.4E-12 79.0 13.8 176 142-331 102-316 (319)
301 KOG1920 IkappaB kinase complex 98.9 1.6E-06 3.5E-11 85.6 24.6 200 128-336 67-325 (1265)
302 KOG0882 Cyclophilin-related pe 98.9 7.6E-08 1.6E-12 84.6 14.1 273 128-411 8-306 (558)
303 KOG4190 Uncharacterized conser 98.9 5.7E-09 1.2E-13 93.8 7.0 174 207-418 728-912 (1034)
304 PRK11138 outer membrane biogen 98.8 3.6E-06 7.8E-11 78.5 26.0 217 98-336 121-356 (394)
305 KOG3914 WD repeat protein WDR4 98.8 6.8E-08 1.5E-12 83.8 11.9 158 220-421 68-232 (390)
306 KOG2695 WD40 repeat protein [G 98.8 3.1E-08 6.7E-13 84.1 9.1 154 219-411 216-377 (425)
307 PRK02888 nitrous-oxide reducta 98.8 2.4E-06 5.2E-11 80.5 22.2 226 94-334 138-405 (635)
308 KOG3617 WD40 and TPR repeat-co 98.8 2.7E-07 5.9E-12 87.4 16.0 103 90-202 20-131 (1416)
309 KOG0882 Cyclophilin-related pe 98.8 4.5E-07 9.8E-12 79.9 15.8 248 81-340 5-312 (558)
310 KOG0309 Conserved WD40 repeat- 98.8 1E-07 2.2E-12 88.9 11.8 206 171-414 20-236 (1081)
311 KOG1275 PAB-dependent poly(A) 98.7 8.1E-08 1.7E-12 91.6 11.0 174 193-408 156-340 (1118)
312 PF14583 Pectate_lyase22: Olig 98.7 0.00013 2.8E-09 65.1 30.0 219 92-324 42-303 (386)
313 PF04053 Coatomer_WDAD: Coatom 98.7 6.3E-06 1.4E-10 76.5 22.2 219 84-334 31-263 (443)
314 COG0823 TolB Periplasmic compo 98.7 1.3E-05 2.7E-10 74.3 23.9 176 156-336 173-361 (425)
315 PF00400 WD40: WD domain, G-be 98.7 1.1E-07 2.3E-12 55.9 6.4 36 373-408 4-39 (39)
316 KOG2695 WD40 repeat protein [G 98.7 1.3E-07 2.9E-12 80.3 9.2 143 193-341 233-384 (425)
317 KOG4714 Nucleoporin [Nuclear s 98.7 1.7E-07 3.7E-12 76.7 9.4 138 235-410 107-254 (319)
318 PF00400 WD40: WD domain, G-be 98.7 1E-07 2.2E-12 56.0 6.2 39 291-331 1-39 (39)
319 KOG1832 HIV-1 Vpr-binding prot 98.6 1.1E-07 2.3E-12 90.6 8.4 215 79-321 1095-1319(1516)
320 PF04841 Vps16_N: Vps16, N-ter 98.6 0.00013 2.9E-09 67.8 28.6 220 91-331 34-285 (410)
321 KOG1920 IkappaB kinase complex 98.6 0.00011 2.4E-09 73.2 27.6 237 83-334 66-366 (1265)
322 COG0823 TolB Periplasmic compo 98.5 1.7E-05 3.7E-10 73.4 18.8 182 195-416 174-362 (425)
323 PF11768 DUF3312: Protein of u 98.5 1.5E-05 3.2E-10 73.5 17.4 135 195-335 185-331 (545)
324 PF02897 Peptidase_S9_N: Proly 98.5 0.00058 1.3E-08 64.3 28.7 244 87-336 125-407 (414)
325 cd00216 PQQ_DH Dehydrogenases 98.5 0.00071 1.5E-08 64.8 29.3 228 96-338 61-379 (488)
326 PF03178 CPSF_A: CPSF A subuni 98.4 0.00053 1.1E-08 62.0 26.7 170 156-334 2-203 (321)
327 KOG2066 Vacuolar assembly/sort 98.4 9.7E-06 2.1E-10 76.9 15.1 139 235-423 55-198 (846)
328 KOG1832 HIV-1 Vpr-binding prot 98.4 2.4E-07 5.2E-12 88.3 4.1 190 127-342 1099-1300(1516)
329 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00082 1.8E-08 55.8 23.9 127 97-233 23-154 (354)
330 PF04053 Coatomer_WDAD: Coatom 98.4 3.9E-05 8.4E-10 71.3 18.3 220 128-411 31-263 (443)
331 PRK02888 nitrous-oxide reducta 98.4 0.0002 4.3E-09 67.9 22.9 234 140-411 140-405 (635)
332 KOG3621 WD40 repeat-containing 98.4 0.00018 3.9E-09 67.7 22.2 203 78-295 26-251 (726)
333 COG3386 Gluconolactonase [Carb 98.4 0.00075 1.6E-08 59.7 24.9 207 156-400 47-275 (307)
334 PF11768 DUF3312: Protein of u 98.4 7.2E-05 1.6E-09 69.1 18.9 116 259-412 206-331 (545)
335 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.0002 4.3E-09 65.6 21.8 176 156-334 23-267 (353)
336 PF06977 SdiA-regulated: SdiA- 98.3 0.0007 1.5E-08 57.7 23.3 196 122-330 15-247 (248)
337 PF06433 Me-amine-dh_H: Methyl 98.3 0.0017 3.7E-08 57.1 27.8 262 107-421 18-329 (342)
338 KOG2114 Vacuolar assembly/sort 98.3 0.00017 3.8E-09 69.3 21.1 201 87-298 27-252 (933)
339 PF08553 VID27: VID27 cytoplas 98.3 0.00014 3.1E-09 71.4 21.1 132 193-333 503-647 (794)
340 PF03178 CPSF_A: CPSF A subuni 98.3 0.0014 2.9E-08 59.4 26.3 217 107-330 3-262 (321)
341 KOG1275 PAB-dependent poly(A) 98.3 2E-05 4.4E-10 75.8 14.5 175 99-287 149-340 (1118)
342 KOG1645 RING-finger-containing 98.3 7.3E-05 1.6E-09 65.5 16.5 243 78-334 186-462 (463)
343 COG3391 Uncharacterized conser 98.3 0.0022 4.7E-08 59.3 27.5 240 87-339 32-289 (381)
344 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00039 8.5E-09 63.7 20.3 139 193-336 22-221 (353)
345 COG3386 Gluconolactonase [Carb 98.2 0.0014 3E-08 58.0 22.5 211 92-322 31-274 (307)
346 KOG1645 RING-finger-containing 98.1 7.7E-05 1.7E-09 65.3 13.0 89 158-249 175-268 (463)
347 COG3391 Uncharacterized conser 98.1 0.0019 4E-08 59.8 23.1 218 86-314 74-309 (381)
348 KOG3621 WD40 repeat-containing 98.1 2.2E-05 4.8E-10 73.5 9.9 124 257-411 32-155 (726)
349 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.012 2.5E-07 56.9 31.1 189 97-294 70-338 (527)
350 cd00216 PQQ_DH Dehydrogenases 98.1 0.0072 1.5E-07 58.0 26.9 231 98-338 111-429 (488)
351 PF04841 Vps16_N: Vps16, N-ter 98.0 0.012 2.5E-07 55.0 27.2 168 157-336 62-249 (410)
352 KOG2114 Vacuolar assembly/sort 98.0 0.0027 5.8E-08 61.5 22.1 187 136-336 30-246 (933)
353 PF00780 CNH: CNH domain; Int 98.0 0.0039 8.5E-08 55.0 22.0 194 87-299 37-265 (275)
354 PRK13616 lipoprotein LpqB; Pro 97.9 0.0011 2.4E-08 64.3 18.4 109 216-332 351-475 (591)
355 PF00780 CNH: CNH domain; Int 97.9 0.0083 1.8E-07 52.9 22.8 216 95-339 5-261 (275)
356 PF02897 Peptidase_S9_N: Proly 97.9 0.022 4.8E-07 53.7 27.3 195 131-333 125-357 (414)
357 KOG1008 Uncharacterized conser 97.9 5.1E-06 1.1E-10 76.8 1.4 194 132-335 61-277 (783)
358 PF05694 SBP56: 56kDa selenium 97.9 0.015 3.2E-07 52.9 22.7 224 96-322 86-392 (461)
359 PF06977 SdiA-regulated: SdiA- 97.9 0.014 3.1E-07 49.9 25.4 194 81-286 17-247 (248)
360 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0029 6.4E-08 45.7 14.7 67 261-334 2-72 (111)
361 PF14655 RAB3GAP2_N: Rab3 GTPa 97.8 0.025 5.5E-07 52.1 27.0 76 259-336 308-401 (415)
362 COG3490 Uncharacterized protei 97.8 0.016 3.4E-07 49.2 20.5 157 164-322 56-244 (366)
363 PF14583 Pectate_lyase22: Olig 97.7 0.025 5.4E-07 51.0 22.1 198 136-336 42-275 (386)
364 PF08596 Lgl_C: Lethal giant l 97.7 0.023 5.1E-07 52.4 22.8 230 87-337 3-294 (395)
365 PF08553 VID27: VID27 cytoplas 97.7 0.009 2E-07 59.2 21.1 194 176-410 431-647 (794)
366 KOG3617 WD40 and TPR repeat-co 97.7 5.1E-05 1.1E-09 72.6 5.6 110 262-411 19-132 (1416)
367 KOG2066 Vacuolar assembly/sort 97.7 0.003 6.5E-08 60.7 16.8 152 80-247 53-233 (846)
368 KOG1008 Uncharacterized conser 97.6 1.2E-05 2.6E-10 74.4 0.0 164 79-248 96-276 (783)
369 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.059 1.3E-06 52.1 24.4 233 100-338 123-495 (527)
370 KOG4640 Anaphase-promoting com 97.6 0.00037 8.1E-09 64.8 8.7 93 216-313 22-115 (665)
371 PF10647 Gmad1: Lipoprotein Lp 97.5 0.025 5.5E-07 49.0 19.5 159 216-403 25-188 (253)
372 KOG2395 Protein involved in va 97.5 0.002 4.4E-08 58.9 12.7 143 186-334 344-501 (644)
373 KOG4640 Anaphase-promoting com 97.5 0.00063 1.4E-08 63.4 9.4 79 258-340 20-99 (665)
374 smart00320 WD40 WD40 repeats. 97.5 0.00039 8.5E-09 39.7 5.2 36 373-408 5-40 (40)
375 PRK13616 lipoprotein LpqB; Pro 97.4 0.037 8E-07 54.0 20.9 149 176-333 350-525 (591)
376 KOG2079 Vacuolar assembly/sort 97.4 0.00091 2E-08 66.2 9.8 96 235-333 105-203 (1206)
377 smart00320 WD40 WD40 repeats. 97.4 0.00067 1.4E-08 38.6 5.9 38 292-331 3-40 (40)
378 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.031 6.7E-07 46.8 16.7 113 220-338 16-128 (354)
379 PF05096 Glu_cyclase_2: Glutam 97.4 0.069 1.5E-06 45.6 25.0 184 84-280 43-252 (264)
380 COG3490 Uncharacterized protei 97.4 0.073 1.6E-06 45.3 20.9 240 86-333 68-348 (366)
381 COG3204 Uncharacterized protei 97.3 0.081 1.7E-06 45.4 19.3 162 127-298 83-271 (316)
382 COG3204 Uncharacterized protei 97.3 0.074 1.6E-06 45.6 18.8 183 81-272 81-297 (316)
383 KOG4499 Ca2+-binding protein R 97.3 0.066 1.4E-06 44.2 19.4 202 98-313 28-263 (310)
384 KOG1897 Damage-specific DNA bi 97.3 0.24 5.2E-06 49.5 27.0 226 99-334 686-943 (1096)
385 PRK10115 protease 2; Provision 97.3 0.25 5.5E-06 49.6 28.6 241 86-336 127-397 (686)
386 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.034 7.4E-07 40.3 13.1 91 142-242 16-109 (111)
387 KOG2395 Protein involved in va 97.1 0.031 6.7E-07 51.6 14.8 144 228-411 346-501 (644)
388 PF05694 SBP56: 56kDa selenium 97.1 0.24 5.2E-06 45.4 25.7 189 141-337 88-346 (461)
389 KOG1897 Damage-specific DNA bi 97.0 0.45 9.8E-06 47.7 25.7 278 85-413 583-901 (1096)
390 PF08596 Lgl_C: Lethal giant l 97.0 0.16 3.6E-06 46.9 19.3 194 79-279 80-327 (395)
391 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0032 6.9E-08 38.0 5.0 31 381-411 12-42 (47)
392 PHA02713 hypothetical protein; 96.9 0.37 8E-06 47.2 21.9 219 108-336 274-536 (557)
393 PRK10115 protease 2; Provision 96.7 0.78 1.7E-05 46.2 29.5 203 129-333 126-344 (686)
394 KOG2444 WD40 repeat protein [G 96.7 0.0035 7.6E-08 51.3 5.3 136 236-411 37-178 (238)
395 PF12894 Apc4_WD40: Anaphase-p 96.7 0.0071 1.5E-07 36.5 5.2 34 258-293 11-44 (47)
396 PF05096 Glu_cyclase_2: Glutam 96.6 0.37 8E-06 41.3 26.7 190 122-322 37-249 (264)
397 KOG2079 Vacuolar assembly/sort 96.4 0.014 2.9E-07 58.3 8.1 69 269-339 98-166 (1206)
398 COG5167 VID27 Protein involved 96.3 0.19 4E-06 46.6 14.2 139 186-335 478-634 (776)
399 KOG4441 Proteins containing BT 96.1 1.3 2.8E-05 43.5 20.0 191 141-336 285-502 (571)
400 COG3823 Glutamine cyclotransfe 96.1 0.38 8.2E-06 39.2 13.2 105 96-208 55-164 (262)
401 KOG4441 Proteins containing BT 96.1 1.6 3.6E-05 42.8 21.5 234 94-336 282-549 (571)
402 KOG1916 Nuclear protein, conta 96.0 0.014 2.9E-07 57.2 5.8 163 174-338 131-328 (1283)
403 PHA02713 hypothetical protein; 95.9 1.4 3E-05 43.2 19.5 119 156-279 272-408 (557)
404 PF07995 GSDH: Glucose / Sorbo 95.8 1.4 3E-05 40.0 27.9 236 87-328 3-330 (331)
405 TIGR03074 PQQ_membr_DH membran 95.7 2.7 5.9E-05 42.7 23.5 28 394-423 461-488 (764)
406 PF07995 GSDH: Glucose / Sorbo 95.7 1.6 3.4E-05 39.7 25.8 228 132-405 4-330 (331)
407 COG3823 Glutamine cyclotransfe 95.6 0.4 8.7E-06 39.0 11.7 164 167-337 35-208 (262)
408 KOG2444 WD40 repeat protein [G 95.5 0.047 1E-06 44.9 6.3 99 235-336 76-180 (238)
409 PF12234 Rav1p_C: RAVE protein 95.4 0.33 7.1E-06 47.3 12.6 108 87-201 31-155 (631)
410 TIGR02604 Piru_Ver_Nterm putat 95.4 1.7 3.8E-05 40.1 17.2 150 130-280 14-205 (367)
411 TIGR02604 Piru_Ver_Nterm putat 95.3 1.2 2.7E-05 41.0 15.8 137 176-322 14-202 (367)
412 PF12234 Rav1p_C: RAVE protein 95.2 1.5 3.3E-05 42.8 16.2 121 260-408 31-154 (631)
413 PF14761 HPS3_N: Hermansky-Pud 95.2 1.5 3.3E-05 36.2 16.3 134 140-288 29-213 (215)
414 TIGR03074 PQQ_membr_DH membran 95.1 4.3 9.4E-05 41.3 23.7 177 156-341 270-485 (764)
415 PF08728 CRT10: CRT10; InterP 95.1 0.81 1.7E-05 45.2 14.3 96 236-332 121-245 (717)
416 KOG3630 Nuclear pore complex, 95.1 0.28 6E-06 49.9 11.2 143 175-321 100-261 (1405)
417 PF15390 DUF4613: Domain of un 95.1 0.52 1.1E-05 44.6 12.3 145 175-332 19-185 (671)
418 TIGR03118 PEPCTERM_chp_1 conse 95.0 2.2 4.7E-05 37.3 22.9 217 87-313 24-307 (336)
419 PF10647 Gmad1: Lipoprotein Lp 95.0 2.1 4.6E-05 37.1 18.8 157 87-254 25-204 (253)
420 PF08728 CRT10: CRT10; InterP 94.9 2.5 5.5E-05 41.9 17.0 114 261-410 103-246 (717)
421 KOG2377 Uncharacterized conser 94.8 2.8 6.1E-05 38.6 15.8 155 89-249 26-187 (657)
422 PF15390 DUF4613: Domain of un 94.8 4 8.7E-05 39.0 22.3 113 84-201 55-185 (671)
423 PF10168 Nup88: Nuclear pore c 94.7 0.54 1.2E-05 47.1 12.2 76 259-336 85-182 (717)
424 PF10313 DUF2415: Uncharacteri 94.5 0.17 3.8E-06 29.5 5.0 31 304-334 1-34 (43)
425 PF05935 Arylsulfotrans: Aryls 94.4 4.9 0.00011 38.6 20.3 275 138-423 112-467 (477)
426 PF14870 PSII_BNR: Photosynthe 94.3 3.7 7.9E-05 36.5 24.8 227 87-330 63-301 (302)
427 PF10313 DUF2415: Uncharacteri 94.2 0.29 6.4E-06 28.6 5.6 31 259-290 1-34 (43)
428 KOG4499 Ca2+-binding protein R 94.2 2.9 6.4E-05 34.9 20.3 95 260-390 159-263 (310)
429 PF07569 Hira: TUP1-like enhan 94.1 0.35 7.6E-06 40.8 8.3 69 266-336 18-98 (219)
430 TIGR03118 PEPCTERM_chp_1 conse 94.0 3.9 8.5E-05 35.8 20.4 198 130-336 23-282 (336)
431 COG5276 Uncharacterized conser 93.9 3.9 8.4E-05 35.5 25.1 192 129-336 86-288 (370)
432 PF14761 HPS3_N: Hermansky-Pud 93.9 3.2 6.9E-05 34.4 13.9 106 97-204 29-165 (215)
433 KOG1898 Splicing factor 3b, su 93.8 8.4 0.00018 39.6 17.9 134 196-335 855-1006(1205)
434 COG5276 Uncharacterized conser 93.8 4.1 9E-05 35.3 22.1 223 94-333 135-369 (370)
435 PF14870 PSII_BNR: Photosynthe 93.8 4.7 0.0001 35.8 30.2 234 85-336 16-263 (302)
436 KOG1900 Nuclear pore complex, 93.7 1.5 3.2E-05 45.7 13.1 159 171-335 74-274 (1311)
437 PF09826 Beta_propel: Beta pro 93.5 7.7 0.00017 37.6 23.5 172 156-335 304-520 (521)
438 PHA03098 kelch-like protein; P 93.5 8.2 0.00018 37.8 18.7 188 95-292 293-514 (534)
439 PF13449 Phytase-like: Esteras 93.4 5.8 0.00013 35.9 18.3 61 260-322 86-165 (326)
440 PF12657 TFIIIC_delta: Transcr 93.3 1.3 2.8E-05 35.8 10.2 30 381-410 86-121 (173)
441 KOG2377 Uncharacterized conser 93.3 2 4.2E-05 39.6 11.8 78 256-336 64-143 (657)
442 KOG2280 Vacuolar assembly/sort 93.0 10 0.00022 37.5 19.7 193 108-315 66-271 (829)
443 COG5167 VID27 Protein involved 93.0 8.1 0.00018 36.3 18.1 199 178-420 421-642 (776)
444 PHA03098 kelch-like protein; P 93.0 9.8 0.00021 37.3 18.4 193 137-336 292-514 (534)
445 PF03022 MRJP: Major royal jel 92.9 6.4 0.00014 34.9 23.3 206 87-321 2-253 (287)
446 COG4880 Secreted protein conta 92.9 5.4 0.00012 36.5 13.8 171 157-336 407-595 (603)
447 KOG2247 WD40 repeat-containing 92.5 0.019 4.2E-07 52.4 -1.7 143 128-281 33-181 (615)
448 KOG2280 Vacuolar assembly/sort 92.4 11 0.00025 37.2 16.1 170 238-412 63-248 (829)
449 PF14727 PHTB1_N: PTHB1 N-term 91.9 11 0.00024 35.2 26.4 143 140-288 36-203 (418)
450 TIGR02276 beta_rpt_yvtn 40-res 91.8 1.4 3E-05 25.5 6.4 40 268-311 1-41 (42)
451 KOG3616 Selective LIM binding 91.7 15 0.00032 36.5 15.9 60 85-148 14-74 (1636)
452 PF07569 Hira: TUP1-like enhan 91.7 1.3 2.9E-05 37.3 8.5 66 131-203 14-96 (219)
453 PF10168 Nup88: Nuclear pore c 91.6 7.1 0.00015 39.4 14.5 91 304-411 85-180 (717)
454 PF14655 RAB3GAP2_N: Rab3 GTPa 91.3 5 0.00011 37.4 12.3 42 78-119 300-342 (415)
455 KOG3630 Nuclear pore complex, 91.2 2.9 6.2E-05 43.1 11.2 114 216-334 102-229 (1405)
456 COG4590 ABC-type uncharacteriz 91.2 1.9 4E-05 39.7 9.1 164 207-414 213-390 (733)
457 PF08801 Nucleoporin_N: Nup133 91.1 4.4 9.5E-05 38.3 12.3 31 381-411 190-220 (422)
458 PHA02790 Kelch-like protein; P 90.8 16 0.00035 35.2 19.5 171 156-336 287-473 (480)
459 COG4590 ABC-type uncharacteriz 90.8 1.4 3E-05 40.5 7.9 159 81-249 216-388 (733)
460 PF14269 Arylsulfotran_2: Aryl 90.7 12 0.00025 33.4 15.4 73 260-333 145-220 (299)
461 PF05935 Arylsulfotrans: Aryls 90.2 18 0.0004 34.8 16.4 137 194-338 128-306 (477)
462 COG5308 NUP170 Nuclear pore co 90.1 11 0.00023 38.2 13.7 143 189-337 97-279 (1263)
463 KOG4460 Nuclear pore complex, 90.1 8.9 0.00019 36.2 12.4 78 260-339 105-204 (741)
464 PF09826 Beta_propel: Beta pro 90.0 20 0.00042 34.9 23.3 103 95-199 20-144 (521)
465 COG1520 FOG: WD40-like repeat 89.5 17 0.00038 33.6 22.7 152 140-299 111-278 (370)
466 KOG0783 Uncharacterized conser 89.4 15 0.00033 36.9 13.9 111 88-207 187-316 (1267)
467 PF08801 Nucleoporin_N: Nup133 89.2 11 0.00025 35.5 13.4 31 304-334 190-220 (422)
468 KOG1900 Nuclear pore complex, 88.8 11 0.00025 39.7 13.4 175 219-412 83-274 (1311)
469 PF10395 Utp8: Utp8 family; I 88.5 28 0.0006 34.6 15.5 157 85-249 129-307 (670)
470 KOG2247 WD40 repeat-containing 88.3 0.062 1.3E-06 49.3 -2.3 112 219-337 39-151 (615)
471 PF10395 Utp8: Utp8 family; I 88.3 29 0.00062 34.5 24.5 238 90-339 32-311 (670)
472 KOG1520 Predicted alkaloid syn 88.2 15 0.00032 33.4 12.3 157 175-334 114-294 (376)
473 PF02333 Phytase: Phytase; In 88.2 21 0.00046 32.8 20.0 186 139-335 66-292 (381)
474 PF07676 PD40: WD40-like Beta 88.0 1.7 3.6E-05 24.8 4.4 27 381-407 9-38 (39)
475 PF14781 BBS2_N: Ciliary BBSom 87.5 11 0.00023 28.7 10.3 80 137-222 6-100 (136)
476 PF12657 TFIIIC_delta: Transcr 87.4 7.5 0.00016 31.4 9.5 30 259-289 86-121 (173)
477 PF12768 Rax2: Cortical protei 87.3 6.5 0.00014 34.6 9.5 52 283-336 18-75 (281)
478 PF03022 MRJP: Major royal jel 87.2 21 0.00045 31.7 23.4 136 195-335 35-217 (287)
479 PF10214 Rrn6: RNA polymerase 86.9 41 0.00089 34.7 18.1 114 84-203 144-277 (765)
480 COG1770 PtrB Protease II [Amin 86.7 34 0.00074 33.7 25.0 240 87-336 130-399 (682)
481 PF03088 Str_synth: Strictosid 86.5 6 0.00013 27.7 7.2 44 235-278 33-76 (89)
482 KOG4460 Nuclear pore complex, 86.4 20 0.00043 34.1 12.3 92 305-411 105-199 (741)
483 KOG1916 Nuclear protein, conta 86.4 1 2.2E-05 45.0 4.4 103 79-189 126-238 (1283)
484 TIGR03606 non_repeat_PQQ dehyd 86.4 31 0.00067 32.8 15.9 57 258-315 29-90 (454)
485 KOG1983 Tomosyn and related SN 85.0 57 0.0012 34.7 16.6 74 255-337 195-268 (993)
486 PF11715 Nup160: Nucleoporin N 84.9 8.5 0.00018 37.9 10.2 38 260-298 216-257 (547)
487 PF11715 Nup160: Nucleoporin N 83.7 5.4 0.00012 39.2 8.3 35 305-339 216-254 (547)
488 KOG1898 Splicing factor 3b, su 83.6 61 0.0013 33.9 18.9 170 157-334 854-1049(1205)
489 PF07250 Glyoxal_oxid_N: Glyox 83.5 28 0.00061 29.9 11.9 83 241-324 48-138 (243)
490 PF07676 PD40: WD40-like Beta 82.6 6.1 0.00013 22.4 5.1 31 255-286 5-38 (39)
491 PF10214 Rrn6: RNA polymerase 82.5 64 0.0014 33.3 29.7 157 174-336 78-279 (765)
492 PLN02153 epithiospecifier prot 82.0 40 0.00087 30.7 19.4 23 269-292 137-170 (341)
493 KOG3616 Selective LIM binding 81.8 26 0.00056 34.9 11.4 68 128-200 13-81 (1636)
494 PF03088 Str_synth: Strictosid 81.7 16 0.00034 25.7 8.1 40 193-233 36-75 (89)
495 PF14157 YmzC: YmzC-like prote 81.3 3.6 7.9E-05 26.1 3.8 30 391-421 28-57 (63)
496 COG3292 Predicted periplasmic 81.2 55 0.0012 31.7 17.5 279 84-417 163-451 (671)
497 PF01731 Arylesterase: Arylest 80.9 8.5 0.00018 26.8 6.0 31 304-334 54-85 (86)
498 PF07250 Glyoxal_oxid_N: Glyox 80.2 37 0.00081 29.1 13.6 142 196-342 48-206 (243)
499 TIGR03032 conserved hypothetic 79.9 44 0.00095 29.8 13.0 84 227-315 213-316 (335)
500 PF14781 BBS2_N: Ciliary BBSom 78.8 27 0.00058 26.7 11.8 70 263-337 3-85 (136)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-47 Score=318.91 Aligned_cols=281 Identities=14% Similarity=0.244 Sum_probs=246.1
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|.++|.|++|+|+|+.|++|+ |.++|+||+++.... .+++ +|...|.+++|+||+..+++|+.| |
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~K-gH~~WVlcvawsPDgk~iASG~~d-----g 179 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCK-GHKNWVLCVAWSPDGKKIASGSKD-----G 179 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeec-CCccEEEEEEECCCcchhhccccC-----C
Confidence 367889999999999999999999998 666999999987766 5665 899999999999999999999999 9
Q ss_pred eEEEEeCCCCceeE-Eee-cCCceEEEEEec-----CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC
Q 014007 157 KVMIWDDHQSRCIG-ELS-FRSEVRSVKLRR-----DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 157 ~v~iwd~~~~~~~~-~~~-~~~~v~~~~~~~-----~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (432)
.|++||.++|+++. .+. |...|++++|.| ..+++++ ||.|+|||+..++++..+.+|..+|+++.|--+|
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g 259 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG 259 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc
Confidence 99999999997664 455 999999999976 4566774 9999999999999999999999999998886554
Q ss_pred CcEEEEeecCCCCcEEEEEccCCc--------------------------------------------------------
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASKR-------------------------------------------------------- 250 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~~-------------------------------------------------------- 250 (432)
++. +|+.|++|++|+...+.
T Consensus 260 ---liy-SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 260 ---LIY-SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred ---eEE-ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 333 57789999999865311
Q ss_pred ------------------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007 251 ------------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 251 ------------------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
+..+.+|..-|+.+.||||++++|+++.|.. |++||.++|+.+..|++ |-..|
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS-VkLW~g~tGk~lasfRG--Hv~~V 412 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS-VKLWDGRTGKFLASFRG--HVAAV 412 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-eeeeeCCCcchhhhhhh--cccee
Confidence 0133568888999999999999999999999 99999999999999997 55899
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (432)
+.++|+.|.++|++|+.|.++++||+++.+.. ..+.+|.+.|.++
T Consensus 413 YqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-----------------------------------~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 413 YQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-----------------------------------QDLPGHADEVFAV 457 (480)
T ss_pred EEEEeccCccEEEEcCCCceEEEEEeeeeeec-----------------------------------ccCCCCCceEEEE
Confidence 99999999999999999999999999998732 2366899999999
Q ss_pred EEccCCCEEEEEecCCeEEEEE
Q 014007 387 AFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 387 ~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
.|+|||+.+++|+.|..+++|.
T Consensus 458 DwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCceeecCCCceEEEeec
Confidence 9999999999999999999995
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6e-45 Score=308.58 Aligned_cols=278 Identities=16% Similarity=0.182 Sum_probs=253.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCCCeE
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~v 158 (432)
.+-..+|..+.|+.|++.|++|+ ++.+++|+....... ..|. +|...+.++.|+|. ...+++++.| |++
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~--~~l~-gH~~~v~~~~fhP~~~~~~lat~s~D-----gtv 243 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLL--QTLR-GHTSRVGAAVFHPVDSDLNLATASAD-----GTV 243 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCccee--EEEe-ccccceeeEEEccCCCccceeeeccC-----Cce
Confidence 34577899999999999999999 777999998877444 6776 89999999999997 6799999999 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
++|++.+..++..+. |...|..++|+|+|+++++ |.+-++||++++..+...++|...+..++|.+||. ++++
T Consensus 244 klw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS---L~~t 320 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS---LAAT 320 (459)
T ss_pred eeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc---eeec
Confidence 999999989999999 9999999999999999994 99999999999998888899999999999999996 3445
Q ss_pred cCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 235 g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
|+.|..-+|||++++ .+..+.+|...|.+|+|+|+|..||||+.|++ ++|||++..+++.++.. |..-|+.+.|+|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipA--H~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPA--HSNLVSQVKYSP 397 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceeccc--ccchhhheEecc
Confidence 779999999999995 56678899999999999999999999999999 99999999999988885 678999999998
Q ss_pred -CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 314 -NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 314 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
.|.+|++++.|++++||..++..++ .++.+|++.|.+++.++|+
T Consensus 398 ~~g~fL~TasyD~t~kiWs~~~~~~~-----------------------------------ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 398 QEGYFLVTASYDNTVKIWSTRTWSPL-----------------------------------KSLAGHEGKVISLDISPDS 442 (459)
T ss_pred cCCeEEEEcccCcceeeecCCCcccc-----------------------------------hhhcCCccceEEEEeccCC
Confidence 7889999999999999999988753 3577999999999999999
Q ss_pred CEEEEEecCCeEEEEE
Q 014007 393 NTVVILGMDGSFYRCQ 408 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~ 408 (432)
+++++++.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=9.5e-43 Score=281.97 Aligned_cols=284 Identities=15% Similarity=0.129 Sum_probs=252.6
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..++.+|.+.|+++.|++|+++|++++ |+.+.|||.-+..+.....+ ....|..++|+|.+.++++|+-| +
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGGLd-----N 119 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGGLD-----N 119 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEecCcC-----c
Confidence 478999999999999999999999999 55599999877666644444 78899999999999999999999 9
Q ss_pred eEEEEeCCCC------ceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEec-CC
Q 014007 157 KVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GV 226 (432)
Q Consensus 157 ~v~iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~ 226 (432)
...||++.+. ...+++. |.+.+.+..|-+|+.++.. |.+..+||+++++.+..+.+|...|..+.++| ++
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred eeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 9999999855 3445566 9999999999999998884 78999999999999999999999999999999 55
Q ss_pred CcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007 227 GSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
+. + + +|+-|+..++||++. ...+.+.+|+..|+++.|.|+|.-+++|+.|++ .|+||++..+.+..+.......+
T Consensus 200 nt-F-v-Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 200 NT-F-V-SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred Ce-E-E-ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCC
Confidence 43 3 3 356899999999998 456789999999999999999999999999999 99999999999999986555578
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
|++++||..|++|.+|..|.++.+||.-.++. ...+.+|++.|++
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-----------------------------------vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-----------------------------------VGVLAGHENRVSC 320 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccce-----------------------------------EEEeeccCCeeEE
Confidence 99999999999999999999999999988762 4467899999999
Q ss_pred EEEccCCCEEEEEecCCeEEEEE
Q 014007 386 VAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
+..+|||.-|++|+.|..++||.
T Consensus 321 l~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 321 LGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999994
No 4
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=8e-40 Score=268.35 Aligned_cols=333 Identities=59% Similarity=1.001 Sum_probs=299.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
...+++|+.|...+++|.+.|.+||++++.++.....+. ..+..++.|.|..+..++++|+..|+|++++|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999999999999999998776556655 3448889999999999999999999999999999998888
Q ss_pred ceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcC-CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007 167 RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (432)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d 245 (432)
+++.++....+|.++.+.++...++..+.|++|... +.+.++.+....++-..+++.|..+..++++.|..-|.|+|-|
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 899999999999999999999999999999999998 5688888888888888999999999999999999999999999
Q ss_pred ccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 246 YASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 246 ~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
+..... ..+.+|...|.|++++.+|..+||++..|+.|||||..+|+++.+++.+.....|.+|+|||++.+||+++
T Consensus 166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 988554 78899999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007 323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (432)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 402 (432)
+.|+|+||.++....... ..++..+.+.++|+|+...|.+..+...++....++|..+.+.++..+.||
T Consensus 246 dKgTlHiF~l~~~~~~~~-----------~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dg 314 (346)
T KOG2111|consen 246 DKGTLHIFSLRDTENTED-----------ESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADG 314 (346)
T ss_pred CCCeEEEEEeecCCCCcc-----------ccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCC
Confidence 999999999987553221 114555556789999999999999999999999999999888899999999
Q ss_pred eEEEEEecCCCCCcceEeeecccCCCccC
Q 014007 403 SFYRCQFDPVNGGEMTQLEYNNFLKPEAA 431 (432)
Q Consensus 403 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
..+-+.+++.+++++.+.....+++.+.+
T Consensus 315 sy~k~~f~~~~~g~~~~~~~~~~~~~~~~ 343 (346)
T KOG2111|consen 315 SYYKFKFDPKNGGESSRHEYSYFLSLQDD 343 (346)
T ss_pred cEEEEEeccccccchhhhhhhheeecccC
Confidence 99999999999999999998888877654
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9e-40 Score=263.13 Aligned_cols=296 Identities=14% Similarity=0.172 Sum_probs=242.4
Q ss_pred CcccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEE---EeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
....+.+|++.|+.++..+.+. .|..++ |..+.+|++......+ .+.+. +|...|..+..++++.+.++++.|
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD- 84 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWD- 84 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEecccc-
Confidence 3457889999999999998854 566666 6669999996554333 56776 799999999999999999999999
Q ss_pred CCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCC
Q 014007 152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGV 226 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~ 226 (432)
+++++||+.+++..+.|. |...|.+++|++|.+.+++ |.+|++|++............ .+.|.++.|+|+.
T Consensus 85 ----~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 85 ----GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred ----ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCC
Confidence 999999999999999998 9999999999999999985 899999998654433333333 6789999999998
Q ss_pred CcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
...+++++ +.|+.|++||+++-++ ..+.+|.+.++.+++||||.++++|+.||. +.+||++.++.++.+. +...
T Consensus 161 ~~p~Ivs~-s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~-~~LwdL~~~k~lysl~---a~~~ 235 (315)
T KOG0279|consen 161 SNPIIVSA-SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE-AMLWDLNEGKNLYSLE---AFDI 235 (315)
T ss_pred CCcEEEEc-cCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce-EEEEEccCCceeEecc---CCCe
Confidence 77777764 5999999999999554 567899999999999999999999999999 9999999999998887 6689
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
|.+++|+|+.-.|+.+. +..|+|||+.++..+........ .. ..+..+-....
T Consensus 236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~---------------------g~-----s~~~~~~~cls 288 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGI---------------------GP-----SSKAGDPICLS 288 (315)
T ss_pred EeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccc---------------------cc-----ccccCCcEEEE
Confidence 99999999977776665 55699999999886543311000 00 11122234567
Q ss_pred EEEccCCCEEEEEecCCeEEEEEec
Q 014007 386 VAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
++|++||..|++|-.|+.|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999999999999999999873
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-38 Score=265.51 Aligned_cols=274 Identities=19% Similarity=0.188 Sum_probs=208.6
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.++.|+|++..+++|+.| .++++||+.+..+..+.+ |...|.+++|+|||..+++ ||.|+
T Consensus 109 sS~~-GH~e~Vl~~~fsp~g~~l~tGsGD-----~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 109 SSIA-GHGEAVLSVQFSPTGSRLVTGSGD-----TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred cccC-CCCCcEEEEEecCCCceEEecCCC-----ceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 4454 899999999999999999999999 999999999999999999 9999999999999999995 99999
Q ss_pred EEEcCCCee-eEEEeeccCCcceEEEecCC---CcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCE
Q 014007 198 VYNFADLKL-LHQIETIANPKGLCAVSQGV---GSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQL 272 (432)
Q Consensus 198 i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~ 272 (432)
+||.+++++ ...+.+|...|++++|.|-. ....+++ ++.||.|+|||+..+ .+..+.+|..+|+|+.|--+| +
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las-~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-l 260 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS-SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-L 260 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceec-ccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-e
Confidence 999998765 46788999999999997632 2224554 558999999999985 556788999999999997665 8
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC-----------CCCC-------------------------
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-----------SNAQ------------------------- 316 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s-----------~~~~------------------------- 316 (432)
|++|+.|++ |++|+...|++.+++++| ...|+.++.+ |.++
T Consensus 261 iySgS~Drt-Ikvw~a~dG~~~r~lkGH--ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 261 IYSGSQDRT-IKVWRALDGKLCRELKGH--AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred EEecCCCce-EEEEEccchhHHHhhccc--chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 999999999 999999887777666653 3455555544 2222
Q ss_pred EEEEEeCCCeEEEEEecCCC-CCCCCCCCCCCCC---CCCCC----------CceeEeecccceeecceeeEEEEecCCC
Q 014007 317 WLAVSSDKGTVHVFNLKVNS-GSARSEPRSTSDP---TLPTS----------SLSFIKGVLPKYFSSEWSVAQFRLVEGS 382 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (432)
.|++|++|+++.+|+-...+ ++....+|...+. ++++. +..++.+.- ..-++++++|-+.
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t------Gk~lasfRGHv~~ 411 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRT------GKFLASFRGHVAA 411 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCC------cchhhhhhhccce
Confidence 36666666666666554332 4444433322222 22222 222221111 1125679999999
Q ss_pred ceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 383 PYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 383 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
|..++|+.|.++|++|+.|.++++|++..+
T Consensus 412 VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 412 VYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred eEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 999999999999999999999999998653
No 7
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=251.01 Aligned_cols=283 Identities=17% Similarity=0.210 Sum_probs=243.2
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
...+.+|.+.|+.+.|+|+|.+||+|+ |..|.+|++......+ ..++ +|...|+.+.|..++..+++++.| .
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-~~lk-gHsgAVM~l~~~~d~s~i~S~gtD-----k 112 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-WVLK-GHSGAVMELHGMRDGSHILSCGTD-----K 112 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-eeec-cccceeEeeeeccCCCEEEEecCC-----c
Confidence 356788999999999999999999998 7779999976544433 3444 899999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+|+.||.++|+.++.++ |..-|+.+.-..-|..++ + |+++++||+++...++++.. .-.++.+.|...+...+
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~- 190 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI- 190 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee-
Confidence 99999999999999999 999999998666666666 2 89999999998888777642 44567889988888765
Q ss_pred EeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC----CceEEEEEeCCCcC--
Q 014007 232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRA-- 304 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----~~~~~~~~~~~~~~-- 304 (432)
+|+-|+.|++||++. .....+.+|...|+.+..+|+|.++.+-+.|.+ +++||++. .+++..+.++.|.-
T Consensus 191 --sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 191 --SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred --eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence 355899999999987 456778999999999999999999999999999 99999975 45688888766553
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
....++|+|+++.+.+|+.|..+++||....+. +..+.+|.+.|+
T Consensus 268 nlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~-----------------------------------lyklpGh~gsvn 312 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI-----------------------------------LYKLPGHYGSVN 312 (338)
T ss_pred hcceeeccCCCCccccccccceEEEeecccccE-----------------------------------EEEcCCcceeEE
Confidence 456789999999999999999999999987552 556789999999
Q ss_pred EEEEccCCCEEEEEecCCeEEEE
Q 014007 385 IVAFGHQKNTVVILGMDGSFYRC 407 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~v~iw 407 (432)
.++|+|...+|.+++.|.+|++=
T Consensus 313 ~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 313 EVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeeecCCCcEEEEeccCceeEee
Confidence 99999999999999999999973
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=270.85 Aligned_cols=242 Identities=17% Similarity=0.152 Sum_probs=221.6
Q ss_pred CCcccCCCCCCCeEEEEEcCC--CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (432)
...+.+.+|...|.++.|+|. +..||+|+ |+.+++|++++...+ ..+. +|...|..++|+|+|.+|++++.|
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l--~~l~-gH~~RVs~VafHPsG~~L~TasfD-- 282 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPL--QDLE-GHLARVSRVAFHPSGKFLGTASFD-- 282 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcch--hhhh-cchhhheeeeecCCCceeeecccc--
Confidence 556889999999999999997 55789888 777999999876555 6776 899999999999999999999999
Q ss_pred CCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
.+-++||+.++..+...+ |...|.+++|.+||.++++ |..-+|||+++|+++..+.+|..+|..++|+|+|..
T Consensus 283 ---~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 283 ---STWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred ---cchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceE
Confidence 999999999998877777 9999999999999999995 778999999999999999999999999999999864
Q ss_pred EEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007 229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
+ + +|+.|++++|||++. ..+.++.+|..-|+.|.|+| .|.+|+|++.|++ ++||..+++.+++.+.+ |++.|
T Consensus 360 l--A-Tgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV 433 (459)
T KOG0272|consen 360 L--A-TGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKV 433 (459)
T ss_pred E--e-ecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--Cccce
Confidence 3 4 466899999999998 56778899999999999999 8899999999999 99999999999999996 77999
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 307 YSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
.++.+++|++++++++.|+++++|.
T Consensus 434 ~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 434 ISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999995
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=241.29 Aligned_cols=272 Identities=17% Similarity=0.232 Sum_probs=228.0
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS- 173 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~- 173 (432)
-+|++++ |.+||+|...++.+. .+++ +....|..+...|+...|+.++. ..|++||+.+++ ++.++.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~--rTiq-h~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~ 81 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICS--RTIQ-HPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEG 81 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEE--EEEe-cCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEec
Confidence 3677777 888999999999877 6665 67788999999999999999887 699999999875 588888
Q ss_pred cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007 174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (432)
Q Consensus 174 ~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 250 (432)
|...|.++.|..+|+.+++ ||+++|||++...+.+.++ +..+|+.+.++|+...++ +|..+|.|++||+....
T Consensus 82 h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi---s~dqsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 82 HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI---SGDQSGNIRVWDLGENS 157 (311)
T ss_pred cCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE---eecCCCcEEEEEccCCc
Confidence 8899999999999999995 8999999999976666664 568999999999987665 35689999999999853
Q ss_pred e-e-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC------ceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 251 T-K-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 251 ~-~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
. . .+......|.++...|||.+|+.+...|+ .++|++-+. +++.+++. |..-+..+.+|||+++||+++
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~a--h~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQA--HNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccccceEhhheec--ccceEEEEEECCCCcEEEeec
Confidence 3 2 23445678999999999999999999999 999998764 34455553 678999999999999999999
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007 323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (432)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 402 (432)
.|.+++||++++.-.+ -.++++|+..++.++||.||++|++|+.|+
T Consensus 235 sdktv~iwn~~~~~kl----------------------------------e~~l~gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFFKL----------------------------------ELVLTGHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred CCceEEEEecCCceee----------------------------------EEEeecCCceEEeeeeccCccEEEecCCCC
Confidence 9999999999886110 125788999999999999999999999999
Q ss_pred eEEEEEecCCCCCcceEee
Q 014007 403 SFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 403 ~v~iw~~~~~~~~~~~~~~ 421 (432)
.+++|++.. ++++.+-.
T Consensus 281 ~~rlW~~~~--~k~v~qy~ 297 (311)
T KOG0315|consen 281 TARLWDLSA--GKEVRQYQ 297 (311)
T ss_pred ceeeccccc--CceeeecC
Confidence 999998744 55555444
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-37 Score=255.29 Aligned_cols=284 Identities=17% Similarity=0.217 Sum_probs=250.6
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
..+.+.+|..+|+.+-|+|+-.++++++++. |++||..+++.. ..++ +|...+.+++|+..|..+++++.|
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~Lr-GHt~sv~di~~~a~Gk~l~tcSsD----- 171 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLR-GHTDSVFDISFDASGKYLATCSSD----- 171 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhh-ccccceeEEEEecCccEEEecCCc-----
Confidence 3456677999999999999999999998554 999999988874 7787 888889999999999999999998
Q ss_pred CeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 156 NKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 156 ~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
-.+++||..+ .++++.+. |...|.++.|-|.|.++++ |.+|+.|++.++-++.++.+|...+..++...||. +
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt--i 249 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT--I 249 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee--E
Confidence 7799999877 45666655 8999999999999999885 89999999999999999999999998888888874 5
Q ss_pred EEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC---------------CCEEEEEcCCCceEEEEECCCCceE
Q 014007 231 LVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD---------------GQLLATSSTKGTLVRIFNTLDGTLL 294 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~---------------~~~l~~~~~dg~~i~vwd~~~~~~~ 294 (432)
+++ ++.|.+|++|-+.++. ...+..|+.+|.|++|.|. +.++.+++.|++ |++||+.++.++
T Consensus 250 ~As-~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL 327 (406)
T KOG0295|consen 250 IAS-CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCL 327 (406)
T ss_pred EEe-cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEE
Confidence 554 5689999999999864 4567899999999999873 359999999999 999999999999
Q ss_pred EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007 295 QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 295 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
.++.+ |...|..++|+|.|+||+++.+|+++++||+++.++.+
T Consensus 328 ~tL~g--hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk----------------------------------- 370 (406)
T KOG0295|consen 328 FTLVG--HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMK----------------------------------- 370 (406)
T ss_pred EEEec--ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeee-----------------------------------
Confidence 99996 66999999999999999999999999999999998643
Q ss_pred EEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 375 QFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 375 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
.+..|+.-|+++.|..+..++++|+-|-.+++|..
T Consensus 371 ~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 371 TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 45578888999999999999999999999999963
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-37 Score=265.12 Aligned_cols=284 Identities=17% Similarity=0.258 Sum_probs=239.6
Q ss_pred ccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCC--C----eeEEEeecc-----cCcceeEEEEeeeCCeEEEe
Q 014007 79 STSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDP--F----REIFRRDFE-----RGGGIGVVEMLFRCNILALV 145 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~--~----~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~ 145 (432)
.+.. |...|.+.+|+|-.. +|++|+ +-+.++|++.. . ...++..+. ...+..|++++|+.+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 999999999999776 888887 66699999863 1 111111111 12446899999999999999
Q ss_pred cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEE
Q 014007 146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCA 221 (432)
Q Consensus 146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 221 (432)
+|..| |.+++|+ ..|..+.++. |+++|.++.|+.+|.++++ |+++.+||..++...+.+..|..+.-.+.
T Consensus 252 tG~~~-----G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVd 325 (524)
T KOG0273|consen 252 TGSED-----GEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVD 325 (524)
T ss_pred EeecC-----cEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceE
Confidence 99999 9999999 5677788887 9999999999999999984 99999999999999999988877744566
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~ 300 (432)
|-.+.. ++++ +.|+.|+|+.+.. .+..++.+|.+.|.++.|+|.|.+|++++.|++ ++||......+...+..
T Consensus 326 W~~~~~---F~ts-~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T-lkiWs~~~~~~~~~l~~- 399 (524)
T KOG0273|consen 326 WQSNDE---FATS-STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT-LKIWSMGQSNSVHDLQA- 399 (524)
T ss_pred EecCce---Eeec-CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe-eEeeecCCCcchhhhhh-
Confidence 655543 3443 4899999999987 567788999999999999999999999999999 99999999999888885
Q ss_pred CCcCceEEEEECCCCC---------EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 301 ADRAEIYSLAFSSNAQ---------WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
|...|..+.|+|+|. .|++++.|++|++||+..+.+
T Consensus 400 -Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~---------------------------------- 444 (524)
T KOG0273|consen 400 -HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP---------------------------------- 444 (524)
T ss_pred -hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce----------------------------------
Confidence 668999999999753 789999999999999999874
Q ss_pred eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
++.+..|..+|.+|+|+|+|++||+|+.||.|.||+...
T Consensus 445 -i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 445 -IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred -eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 556778999999999999999999999999999998744
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.4e-38 Score=285.94 Aligned_cols=270 Identities=17% Similarity=0.247 Sum_probs=226.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...++|..|++|+++||.|..+. |++|.+.+.+.. .++ +...+.. +-+.+.| -.+.+.|-
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~---~lk--~~~~l~~---------~d~~sad-----~~~~~~D~ 438 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK---KLK--DASDLSN---------IDTESAD-----VDVDMLDD 438 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhc---ccc--chhhhcc---------ccccccc-----hhhhhccc
Confidence 56899999999999999998555 999998765432 232 2211111 1122222 34666666
Q ss_pred CCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 164 HQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
......+++. |.++|.+..|+|+.+++++ |+++++|.+.+..++-.+++|..+|..+.|+|.|- ++++ ++.|+
T Consensus 439 ~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy--YFat-as~D~ 515 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY--YFAT-ASHDQ 515 (707)
T ss_pred cCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce--EEEe-cCCCc
Confidence 6665555555 9999999999999999994 89999999999999999999999999999998864 5565 45899
Q ss_pred cEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007 240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (432)
Q Consensus 240 ~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 318 (432)
+.++|..+. ...+.+.+|-+.|.|+.|+|+..|+++|+.|.+ ||+||+.+|..++.|.+ |.++|.+++|||+|++|
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~L 592 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYL 592 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceE
Confidence 999999887 667788999999999999999999999999999 99999999999999986 77999999999999999
Q ss_pred EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007 319 AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL 398 (432)
Q Consensus 319 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 398 (432)
++|+.||.|++||+.+++.+ ..+++|.+.|.++.||.||..||+|
T Consensus 593 aSg~ed~~I~iWDl~~~~~v-----------------------------------~~l~~Ht~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLV-----------------------------------KQLKGHTGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred eecccCCcEEEEEcCCCcch-----------------------------------hhhhcccCceeEEEEecCCCEEEec
Confidence 99999999999999998743 3577899999999999999999999
Q ss_pred ecCCeEEEEEecCCCC
Q 014007 399 GMDGSFYRCQFDPVNG 414 (432)
Q Consensus 399 ~~dg~v~iw~~~~~~~ 414 (432)
+.|.+|++|++....+
T Consensus 638 g~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 638 GADNSVRLWDLTKVIE 653 (707)
T ss_pred CCCCeEEEEEchhhcc
Confidence 9999999999865433
No 13
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=100.00 E-value=4.8e-35 Score=244.93 Aligned_cols=336 Identities=32% Similarity=0.570 Sum_probs=276.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
....+..+.|+.+...|..|+.+|.++|+.++..... ... .....|+.+.|+....++++.... ..++++++
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~-~~~--~~~~~IvEmLFSSSLvaiV~~~qp-----r~Lkv~~~ 75 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCF-SKD--TEGVSIVEMLFSSSLVAIVSIKQP-----RKLKVVHF 75 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhh-ccc--CCCeEEEEeecccceeEEEecCCC-----ceEEEEEc
Confidence 3456788889999999999999999999998776632 222 367889999999999999998654 78999999
Q ss_pred CCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEeecC-CCCcE
Q 014007 164 HQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGL-QKGQV 241 (432)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~-~d~~i 241 (432)
+.+..+.++....+|.++.++.+..+++....|+|||+++.++++++... .++...++++++..+.+++..++ ..|.|
T Consensus 76 Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 76 KKKTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred ccCceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 99999999999999999999999999999888999999999999999766 56777899999988888887664 56999
Q ss_pred EEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007 242 RVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 242 ~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 320 (432)
.+||..+ ..+..+..|++.+.+++|+++|.+|||++..|++||||.+.+|+.+.+|+.+.....|.+++|+|++++|++
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999988 667788999999999999999999999999999999999999999999998877778999999999999999
Q ss_pred EeCCCeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCceeEeecccceeecceeeEEEEecCCCc-eEEEEcc--CCCE
Q 014007 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDP---TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP-YIVAFGH--QKNT 394 (432)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~--~~~~ 394 (432)
.++.++|+||.++.....+... ...... ........++...+.......+.++..+.+.... ..+.+.+ ...+
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~~-p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~ 314 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPES-PTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR 314 (391)
T ss_pred ecCCCeEEEEEecccccCCCCC-CCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence 9999999999998766322221 111111 0000111122223334456677888888887654 5566664 7789
Q ss_pred EEEEecCCeEEEEEecCCCCCcceEeeecccCCC
Q 014007 395 VVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKP 428 (432)
Q Consensus 395 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 428 (432)
+.+++.||.++.|.+++++|++|..++.|.+...
T Consensus 315 v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~ 348 (391)
T KOG2110|consen 315 VLVASYDGHLYSYRLPPKEGGECALIKRHFLDGS 348 (391)
T ss_pred EEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCc
Confidence 9999999999999999999999999998887654
No 14
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.1e-37 Score=258.54 Aligned_cols=290 Identities=13% Similarity=0.157 Sum_probs=245.2
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
...+++..|.+.|..+.||++|++||+++ |.+.-||.+.... ....+++. +|...|..+.|+||..++++++.+
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~--- 290 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFD--- 290 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCch---
Confidence 34578899999999999999999999999 5568889875433 33446665 899999999999999999999988
Q ss_pred CCCeEEEEeCCCCceeEEeec--CCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc-CCcceEEEecCCC
Q 014007 154 PLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVG 227 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 227 (432)
..+.+||+.+|.....+.+ ...+.+.+|.|||..+++ |+++..||+. |..+..+++.. ..+..+++.+||+
T Consensus 291 --e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 --EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred --HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc
Confidence 8899999999999998884 588999999999988774 8999999985 55555554432 3577899999999
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
.+++++ .|..|++|+......+.+.....+|+++.+|.+|+++++.-.+.. |++||++..+.+..+.++.....+.
T Consensus 368 ~vl~v~---~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVT---VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEe---cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEE
Confidence 988765 799999999988666655566788999999999999999999999 9999999999999998764444566
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007 308 SLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (432)
Q Consensus 308 ~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (432)
.-+|.- +..++++|++|+.|+||+..+++. ++.+.+|...|++|
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkl-----------------------------------l~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKL-----------------------------------LAVLSGHSKTVNCV 488 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCce-----------------------------------eEeecCCcceeeEE
Confidence 666754 558999999999999999999884 56788999999999
Q ss_pred EEcc-CCCEEEEEecCCeEEEEEecC
Q 014007 387 AFGH-QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 387 ~~s~-~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+|+| +..++|+++.||+|+||....
T Consensus 489 swNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 489 SWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999 667899999999999998754
No 15
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-37 Score=262.06 Aligned_cols=277 Identities=12% Similarity=0.185 Sum_probs=235.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
.-.|..+.|.|+|+.|++|++.| +.+|+..... +...++ .|...|.++.|+.++..+++|+.+ |.|++|+.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--FEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--FETILQ-AHDSPVRTMKWSHNGTWMISGDKG-----GMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee--HHHHhh-hhcccceeEEEccCCCEEEEcCCC-----ceEEeccc
Confidence 45789999999999999999777 9999974433 223343 799999999999999999999999 99999996
Q ss_pred CCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007 164 HQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
.-. .++.+. |...|++++|+|+...+++ ||+|+|||....+.-..+.+|.-.+.++.|+|... +++ +|+.|
T Consensus 168 nmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg--Lia-sgskD 243 (464)
T KOG0284|consen 168 NMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG--LIA-SGSKD 243 (464)
T ss_pred chh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc--eeE-EccCC
Confidence 544 444444 5699999999996655552 89999999998888888899999999999999865 344 35689
Q ss_pred CcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CC
Q 014007 239 GQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQ 316 (432)
Q Consensus 239 ~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~ 316 (432)
..|++||.++ .++.++.+|...|..+.|+|++++|++++.|.. ++++|+++.+.++.+++ |+..++++.|+|- ..
T Consensus 244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhc--chhhheeecccccccc
Confidence 9999999998 567788999999999999999999999999999 99999999999999986 7789999999994 45
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 396 (432)
+|.+|+.||.|..|.+...+.+..+ -..|++.|++++|+|-|..|+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i----------------------------------~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEI----------------------------------PPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred ceeeccCCCceEEEeccccccccCC----------------------------------CcccccceeeeeccccceeEe
Confidence 7888999999999999865544332 235888999999999999999
Q ss_pred EEecCCeEEEEEec
Q 014007 397 ILGMDGSFYRCQFD 410 (432)
Q Consensus 397 ~~~~dg~v~iw~~~ 410 (432)
+|+.|.++++|.-.
T Consensus 367 tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRN 380 (464)
T ss_pred ecCCCcceeeeccC
Confidence 99999999999753
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-35 Score=253.58 Aligned_cols=274 Identities=18% Similarity=0.271 Sum_probs=240.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...|++++|+.+|.+||+|..+| ++||+.+... . ..+. .|..+|.++.|+..+.++++++-| +++.+||.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~--~tl~-~HkgPI~slKWnk~G~yilS~~vD-----~ttilwd~ 305 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-I--STLG-QHKGPIFSLKWNKKGTYILSGGVD-----GTTILWDA 305 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh-h--hhhh-ccCCceEEEEEcCCCCEEEeccCC-----ccEEEEec
Confidence 46899999999999999999666 9999976443 2 3443 699999999999999999999999 99999999
Q ss_pred CCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007 164 HQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (432)
.+++..+.+. |..+-..+.|-.+..++. .|+.|+++.+....++.++.+|.+.|.++.|.|.+.. +++ .+.|++
T Consensus 306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L--LaS-~SdD~T 382 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL--LAS-CSDDGT 382 (524)
T ss_pred cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCce--EEE-ecCCCe
Confidence 9999999999 666668899999888888 4999999999999999999999999999999999863 343 358999
Q ss_pred EEEEEccC-CceeeeeccCCceeEEEEcCCC---------CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDG---------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 241 i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
++||.... .....+.+|...|..+.|+|.| ..|++++.|++ |++||+..+.++.+|.. |..+|++++
T Consensus 383 lkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~k--H~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMK--HQEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeecc--CCCceEEEE
Confidence 99999665 6677899999999999999964 47899999999 99999999999999975 679999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
|+|+|+++|+|+.||.|.+|++++++..+ -....+.|..++|+.
T Consensus 460 fS~~g~ylAsGs~dg~V~iws~~~~~l~~------------------------------------s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 460 FSPNGRYLASGSLDGCVHIWSTKTGKLVK------------------------------------SYQGTGGIFELCWNA 503 (524)
T ss_pred ecCCCcEEEecCCCCeeEeccccchheeE------------------------------------eecCCCeEEEEEEcC
Confidence 99999999999999999999999998322 222345689999999
Q ss_pred CCCEEEEEecCCeEEEEEe
Q 014007 391 QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~ 409 (432)
+|+.|..+-.||.+.+.++
T Consensus 504 ~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDL 522 (524)
T ss_pred CCCEEEEEecCCCceEEEe
Confidence 9999999999999999765
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.6e-36 Score=236.67 Aligned_cols=251 Identities=22% Similarity=0.289 Sum_probs=215.7
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
...........|+.+...||++.||+++...||+||+.+........+. +|...|..+.|..++..+++|++| |
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseD-----g 105 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSED-----G 105 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCC-----c
Confidence 3344555677899999999999999999999999999988876667886 899999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE-eeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
+++|||++...+-+.+++..+|+++..+|+..-+++ +|.|++||+.+..+.+.+ ......+..+.+.|+|..++-
T Consensus 106 t~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a- 184 (311)
T KOG0315|consen 106 TVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA- 184 (311)
T ss_pred eEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE-
Confidence 999999999888888999999999999998766664 789999999987665554 334457888999999986643
Q ss_pred eecCCCCcEEEEEccC-------CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcC
Q 014007 233 CPGLQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRA 304 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~ 304 (432)
....|.+++|++-. .++..++.|++.+..+.+|||+++||+++.|.+ ++||+..+. +....+.+ |..
T Consensus 185 --~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~g--h~r 259 (311)
T KOG0315|consen 185 --ANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLTG--HQR 259 (311)
T ss_pred --ecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEeec--CCc
Confidence 34789999999876 234567899999999999999999999999999 999999887 44445553 668
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
.++.++||.||+||++|+.|+.+++||+..++.+.
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 99999999999999999999999999999998543
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-34 Score=261.53 Aligned_cols=324 Identities=19% Similarity=0.255 Sum_probs=263.9
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
-....+|-+.|.++.|+.|.++|++|+ |-.++||.++..+......+. +|...|+.+-|..+...+.+-+.| |
T Consensus 138 ~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~-gHkd~VvacfF~~~~~~l~tvskd-----G 211 (893)
T KOG0291|consen 138 HRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALN-GHKDYVVACFFGANSLDLYTVSKD-----G 211 (893)
T ss_pred eeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEecc-CCCcceEEEEeccCcceEEEEecC-----c
Confidence 356778999999999999999999998 555999999887776556675 899999999999999999999999 9
Q ss_pred eEEEEeCCC-----------------------Cce-----eE----E--ee-cCCceEEEEEecCccEEEe---CCeEEE
Q 014007 157 KVMIWDDHQ-----------------------SRC-----IG----E--LS-FRSEVRSVKLRRDRIIVVL---EQKIFV 198 (432)
Q Consensus 157 ~v~iwd~~~-----------------------~~~-----~~----~--~~-~~~~v~~~~~~~~~~~~~~---d~~i~i 198 (432)
.+.+|.... ++. .. . +. ....+++.+|++...+++. .|...+
T Consensus 212 ~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L 291 (893)
T KOG0291|consen 212 ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL 291 (893)
T ss_pred eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE
Confidence 999997651 111 00 0 11 2367999999998888873 789999
Q ss_pred EEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEc
Q 014007 199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (432)
|++....+++.+.....++..++|+..|+.+++.+ +.-|.+.||++.+.. +...++|...+++++++|||+++|+|+
T Consensus 292 yelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~--~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 292 YELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC--SKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EecCCceEEEEeecccceeeEEEecccCCEEEEcC--CccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 99999999999998889999999999999887765 457999999999854 456779999999999999999999999
Q ss_pred CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCC-CCC-CCCCCC
Q 014007 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRST-SDP-TLPTSS 355 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~~~~~ 355 (432)
.||. |+|||..++-|..+|.. |...|+.+.|+..|+.|++.+.||+|+.||+...++.+++..... +++ ...+.+
T Consensus 370 eDgK-VKvWn~~SgfC~vTFte--Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s 446 (893)
T KOG0291|consen 370 EDGK-VKVWNTQSGFCFVTFTE--HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS 446 (893)
T ss_pred CCCc-EEEEeccCceEEEEecc--CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC
Confidence 9999 99999999999999996 679999999999999999999999999999999998877763322 222 122211
Q ss_pred ce-eEeecccceeeccee------eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 356 LS-FIKGVLPKYFSSEWS------VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 356 ~~-~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
.. ...+....+.--.|. +-.+.+|+++|.+++|+|+++.|++++.|.+|++|++=.+
T Consensus 447 GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 447 GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 11 112222222222333 4468899999999999999999999999999999998554
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=245.67 Aligned_cols=304 Identities=17% Similarity=0.236 Sum_probs=258.2
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
...++.+|.+.|.|+++.|-+.+|++|+ |++|+|||+.+++.. .++. +|...|..+++++...++++++.|
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lk--ltlt-Ghi~~vr~vavS~rHpYlFs~ged----- 214 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLK--LTLT-GHIETVRGVAVSKRHPYLFSAGED----- 214 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEE--Eeec-chhheeeeeeecccCceEEEecCC-----
Confidence 3578999999999999999999999998 677999999998876 5676 899999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+.|+.||++..+.++.+. |-+.|.+++.+|.-..+++ |.++++||+++...+..+.+|.++|..+.+.|-...++
T Consensus 215 k~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi- 293 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI- 293 (460)
T ss_pred CeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE-
Confidence 999999999999999988 9999999999998888874 88999999999999999999999999999988766654
Q ss_pred EeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
+|+.|++|++||++.++ ...+..|...|.+++.+|....+|+++.|. |+-|++..|..+..+.+ |...|.+++
T Consensus 294 --t~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~ 367 (460)
T KOG0285|consen 294 --TGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLS 367 (460)
T ss_pred --EecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeee
Confidence 45699999999999854 567889999999999999999999999986 89999999999988775 668999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
...|| ++++|+++|.+.+||.+++-..+..... ..|.. + ..+..|.+.+|..
T Consensus 368 ~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~-----------------vqpGS---------l-~sEagI~as~fDk 419 (460)
T KOG0285|consen 368 VNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTI-----------------VQPGS---------L-ESEAGIFASCFDK 419 (460)
T ss_pred eccCc-eEEEcCCceEEEEEecCcCccccccccc-----------------ccCCc---------c-ccccceeEEeecc
Confidence 98876 6779999999999999998643321100 01100 0 1234588999999
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007 391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN 423 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 423 (432)
.|..|++|..|.+|.+|.=|...-+|-..+.|.
T Consensus 420 tg~rlit~eadKtIk~~keDe~aT~EthPl~w~ 452 (460)
T KOG0285|consen 420 TGSRLITGEADKTIKMYKEDEHATEETHPLNWK 452 (460)
T ss_pred cCceEEeccCCcceEEEecccccCcccCCcCCC
Confidence 999999999999999999877655555555443
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.7e-35 Score=263.88 Aligned_cols=303 Identities=15% Similarity=0.251 Sum_probs=240.0
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCC--cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTDH--GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
+.-...+|..++|+..|.+||.|+.+ .+.||+......++ ..+ +|...+.+++++|||..+++|+.| |+|
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl--KQQ-gH~~~i~~l~YSpDgq~iaTG~eD-----gKV 374 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL--KQQ-GHSDRITSLAYSPDGQLIATGAED-----GKV 374 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--ecc-ccccceeeEEECCCCcEEEeccCC-----CcE
Confidence 33445789999999999999999965 49999988766554 333 799999999999999999999999 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCc--ceEEEecCCCcEEEE
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLV 232 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 232 (432)
+|||..++-|..++. |...|+.+.|+..++.+++ ||+|+.||+...+..+++.. ..++ .+++..|.|. ++.
T Consensus 375 KvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGe--lV~ 451 (893)
T KOG0291|consen 375 KVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGE--LVC 451 (893)
T ss_pred EEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCC--EEE
Confidence 999999999999999 9999999999999998883 99999999999998888864 3344 4566666665 333
Q ss_pred eecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEE
Q 014007 233 CPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~ 310 (432)
+++-..-.|.+|++.++.+ ..+.+|+++|.+++|+|+|..|++++.|.+ ||+||+-.. ..+.++. +...+..++
T Consensus 452 AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vs 527 (893)
T KOG0291|consen 452 AGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVS 527 (893)
T ss_pred eeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEE
Confidence 3333446799999999665 467899999999999999999999999999 999998654 3455666 557899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
|+|||+.||+++.||.|.+||+..+.+...+++... ..+.......-.+.-.......+.+++|+
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD---------------~~~gR~~~D~~ta~~sa~~K~Ftti~ySa 592 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKD---------------LSGGRKETDRITAENSAKGKTFTTICYSA 592 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccchhh---------------ccccccccceeehhhcccCCceEEEEEcC
Confidence 999999999999999999999998876544431100 00000000100111122235688999999
Q ss_pred CCCEEEEEecCCeEEEEEecCCC
Q 014007 391 QKNTVVILGMDGSFYRCQFDPVN 413 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~~~ 413 (432)
||+.|++||....|.||+++.+.
T Consensus 593 DG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 593 DGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred CCCEEEecCCcccEEEEECchhh
Confidence 99999999999999999997653
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-34 Score=251.64 Aligned_cols=290 Identities=16% Similarity=0.215 Sum_probs=237.3
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.....|..-|+|++|+|||.++|+++ |+.|.|||-.+++.+....-..+|...|.++.|+||+..+++.+.| .+
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-----kt 258 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-----KT 258 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-----ce
Confidence 56777999999999999999999877 6669999998888775444335799999999999999999999999 99
Q ss_pred EEEEeCCCCceeEEeecCCc----eEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 158 VMIWDDHQSRCIGELSFRSE----VRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
++|||+.+.++++++..... -..+-|..+..+.+ ++|+|.+++......++.+.+|...|+++.+++++.+++
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-- 336 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-- 336 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEE--
Confidence 99999999999999884333 33445654444433 499999999999999999999999999999999997654
Q ss_pred eecCCCCcEEEEEccCCce--------------------------------eee--------------------------
Q 014007 233 CPGLQKGQVRVEHYASKRT--------------------------------KFI-------------------------- 254 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~--------------------------------~~~-------------------------- 254 (432)
+|+.||.|.-|+...+.. +.+
T Consensus 337 -SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 337 -SGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred -eeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 456999999999765210 000
Q ss_pred ----------------ecc--------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 255 ----------------MAH--------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 255 ----------------~~~--------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
..+ .-...+++++|++..++.|+.|+. |+||.+....+..+.....|.++|+.++
T Consensus 416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~va 494 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDVA 494 (603)
T ss_pred CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEEE
Confidence 000 013467889999999999999999 9999998766544433334889999999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
||||+.|||++...+.+.+||+.+.+.. ......|...|++++|+|
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~~~----------------------------------~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASREVK----------------------------------TNRWAFHTAKINCVAWSP 540 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCcee----------------------------------cceeeeeeeeEEEEEeCC
Confidence 9999999999999999999999987631 223556888999999999
Q ss_pred CCCEEEEEecCCeEEEEEecC
Q 014007 391 QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+||+|+-|-.|.||+++.
T Consensus 541 ~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 541 NNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CceEEEeccccceEEEEEccC
Confidence 999999999999999999865
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=230.90 Aligned_cols=288 Identities=14% Similarity=0.227 Sum_probs=236.4
Q ss_pred CcccCCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcC-CCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
..+.+.+|.+.|..++|+|- |.+||+++ |+.|+||+.. .........+.++|...|.+++|+|.+++|++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD--- 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD--- 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---
Confidence 34667889999999999998 88999988 6669999987 334445566767899999999999999999999999
Q ss_pred CCCeEEEEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC---CeeeEEEeeccCCcceEEEec
Q 014007 154 PLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---LKLLHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 154 ~~~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~ 224 (432)
.++.||.-..+ +++..++ |...|.+++|+++|.+|++ |..|-||.+.. .++...++.|...|..+.|+|
T Consensus 83 --~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 83 --ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred --ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC
Confidence 99999986554 6788888 9999999999999999995 89999999874 357788899999999999999
Q ss_pred CCCcEEEEeecCCCCcEEEEEccC----CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~ 300 (432)
... +|++ ++.|.+|++|+-.. ..++++.+|...|.+++|++.|..|++++.|++ |+||-..+ .+. +
T Consensus 161 t~d--lL~S-~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~-----~~~-~ 230 (312)
T KOG0645|consen 161 TED--LLFS-CSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYT-----DLS-G 230 (312)
T ss_pred Ccc--eeEE-eccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeecc-----Ccc-h
Confidence 765 3343 45999999998763 457889999999999999999999999999999 99998652 222 2
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (432)
.|...++.+.|. ...|++++.|+.|++|.-...-..+ .+..+ ...-..|+
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p---------------~~~l~-------------~~~~~aHe 280 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEP---------------SWNLL-------------AKKEGAHE 280 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCc---------------hHHHH-------------Hhhhcccc
Confidence 266789999998 4579999999999999877432111 01100 11244688
Q ss_pred CCceEEEEccC-CCEEEEEecCCeEEEEEe
Q 014007 381 GSPYIVAFGHQ-KNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 381 ~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~ 409 (432)
..|++++|.|. .++|++|+.||.|++|.+
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred cccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 88999999994 789999999999999987
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.6e-34 Score=253.08 Aligned_cols=280 Identities=21% Similarity=0.316 Sum_probs=238.6
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
...+|.+.|++++|+|++++|++++ ++.|++|++.+.+.. ..+. .|...+..+.|.+++..+++++.+ +.|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i 75 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLK-GHTGPVRDVAASADGTYLASGSSD-----KTI 75 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--EEEe-cCCcceeEEEECCCCCEEEEEcCC-----CeE
Confidence 3458999999999999999999998 555999999876643 3333 577788899999999888888888 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
++||+.+++.+..+. |...+.++.|++++.+++. ++.|++||+++++....+..+...+..+.+++++.. +++
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~- 152 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VAS- 152 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE--EEE-
Confidence 999999888888877 7889999999999877773 889999999988888888888888999999998553 332
Q ss_pred cCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 235 g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
+..++.|++||++. .....+..|...+.++.|+|+++.|++++.++. |++||+++++.+..+.. |...+.++.|++
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~ 229 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSP 229 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcC
Confidence 33699999999986 445667788889999999999999999999999 99999999988888853 557999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN 393 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 393 (432)
++.++++++.||.|++||+.+++. ...+..|...|.+++|+++++
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~~~-----------------------------------~~~~~~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTGEC-----------------------------------VQTLSGHTNSVTSLAWSPDGK 274 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCcee-----------------------------------EEEccccCCcEEEEEECCCCC
Confidence 999998888899999999987652 334557778899999999999
Q ss_pred EEEEEecCCeEEEEE
Q 014007 394 TVVILGMDGSFYRCQ 408 (432)
Q Consensus 394 ~l~~~~~dg~v~iw~ 408 (432)
.|++++.||.+++|+
T Consensus 275 ~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 RLASGSADGTIRIWD 289 (289)
T ss_pred EEEEecCCCeEEecC
Confidence 999999999999985
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=270.87 Aligned_cols=284 Identities=18% Similarity=0.273 Sum_probs=243.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
..+...|.++.|+++|++|++++ ++.+++|+....+......+. +|...|.+++|++++.++++++.| ++|+|
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~-~h~~~v~~~~fs~d~~~l~s~s~D-----~tiri 229 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELS-GHTRGVSDVAFSPDGSYLLSGSDD-----KTLRI 229 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccc-ccccceeeeEECCCCcEEEEecCC-----ceEEE
Confidence 44488999999999999999887 666999998655522234453 799999999999999999999999 99999
Q ss_pred EeC-CCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 161 WDD-HQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 161 wd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
||+ ..+..++++. |...|++++|+|++.++++ |++|+|||+++++++..+..|...+..++|++++..++. +
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s---~ 306 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS---A 306 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE---c
Confidence 999 5558889998 9999999999999988774 999999999999999999999999999999999986543 3
Q ss_pred CCCCcEEEEEccCCc---eeeeeccCCc--eeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEE
Q 014007 236 LQKGQVRVEHYASKR---TKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSL 309 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~---~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~ 309 (432)
+.|+.|++||+.++. ...+..+... ++++.|+|++.+|++++.|+. +++||+..++++..+..+... ..+.+.
T Consensus 307 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence 579999999999977 3456666555 999999999999999999999 999999999999999875322 245566
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec-CCCceEEEE
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAF 388 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~ 388 (432)
..++.++++++|+.|+.|++||+.++.. +..+.+| ...+..+++
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~-----------------------------------~~~l~~h~~~~~~~~~~ 430 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSGGI-----------------------------------LQRLEGHSKAAVSDLSS 430 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCccch-----------------------------------hhhhcCCCCCceecccc
Confidence 6788999999999999999999998663 2345667 778899999
Q ss_pred ccCCCEEEEEe--cCCeEEEEEec
Q 014007 389 GHQKNTVVILG--MDGSFYRCQFD 410 (432)
Q Consensus 389 s~~~~~l~~~~--~dg~v~iw~~~ 410 (432)
+|..+++++++ .|+.+++|..+
T Consensus 431 ~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 431 HPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCcCeeeecCcCCCceEEEecCC
Confidence 99999999998 68999999864
No 25
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-34 Score=229.99 Aligned_cols=244 Identities=13% Similarity=0.154 Sum_probs=212.5
Q ss_pred EEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC-----CceeEEee-cCCceEEEEEecCccEEEe
Q 014007 120 FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ-----SRCIGELS-FRSEVRSVKLRRDRIIVVL 192 (432)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 192 (432)
....++ +|...|..++..+. ...++++++| .++.+|++.. |..++.+. |...|..+..++||.++++
T Consensus 7 l~~tl~-gh~d~Vt~la~~~~~~~~l~sasrD-----k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 7 LRGTLE-GHTDWVTALAIKIKNSDILVSASRD-----KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred eeeeec-CCCceEEEEEeecCCCceEEEcccc-----eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEe
Confidence 335565 89999999997765 6788999999 9999998754 56788888 9999999999999999884
Q ss_pred ---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc--CCceeEEEEc
Q 014007 193 ---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH--DSRIACFALT 267 (432)
Q Consensus 193 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~s 267 (432)
|+++++||+.+++..+.+.+|...+.+++|++|.+.++ +|+.|.+|++|+..+....++..+ .+.|.|+.|+
T Consensus 81 ~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qiv---SGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIV---SGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceee---cCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 99999999999999999999999999999999988653 577999999999999877776654 7899999999
Q ss_pred CC--CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC
Q 014007 268 QD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS 345 (432)
Q Consensus 268 p~--~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (432)
|+ ..+|++++.|++ |++||+++.+....+.+ |.+.++.+++||||...++|+.||.+.+||++.++.+.
T Consensus 158 P~~~~p~Ivs~s~Dkt-vKvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly------ 228 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKT-VKVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY------ 228 (315)
T ss_pred CCCCCcEEEEccCCce-EEEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeE------
Confidence 97 689999999999 99999999999988886 66899999999999999999999999999999988432
Q ss_pred CCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
...|...|.+++|+|+.-+|+.+... .|+||+++.+
T Consensus 229 ------------------------------sl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~ 264 (315)
T KOG0279|consen 229 ------------------------------SLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESK 264 (315)
T ss_pred ------------------------------eccCCCeEeeEEecCCceeEeeccCC-ceEEEeccch
Confidence 23466789999999998788766655 5999999774
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-34 Score=228.47 Aligned_cols=297 Identities=14% Similarity=0.167 Sum_probs=242.3
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
.+.+|..+++.|.|+.+|.+|.+++ |....+|-..+++.+ .++. +|...|+++..+.+...+++|+.| .++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerl--Gty~-GHtGavW~~Did~~s~~liTGSAD-----~t~ 76 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERL--GTYD-GHTGAVWCCDIDWDSKHLITGSAD-----QTA 76 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCcee--eeec-CCCceEEEEEecCCcceeeecccc-----cee
Confidence 4678999999999999999999888 666999987666655 6665 899999999999999999999999 999
Q ss_pred EEEeCCCCceeEEeecCCceEEEEEecCccEEEe--------CCeEEEEEcCC-------CeeeEEEeeccCCcceEEEe
Q 014007 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFAD-------LKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~ 223 (432)
++||+++|+++..++.+.+|..+.|+.+|.+++. .+.|.++|++. .++...+..+...++..-|.
T Consensus 77 kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9999999999999999999999999999988772 35799999983 45577777778888899999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~ 301 (432)
|-++.+ + +|.+||.|.+||.+++. +.....|...|+.+++++|..++++++.|.+ -++||+.+.++++++.
T Consensus 157 ~l~~~i--i-~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtt-akl~D~~tl~v~Kty~--- 229 (327)
T KOG0643|consen 157 PLGETI--I-AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTT-AKLVDVRTLEVLKTYT--- 229 (327)
T ss_pred ccCCEE--E-EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCcc-ceeeeccceeeEEEee---
Confidence 998854 3 35699999999999853 3345689999999999999999999999999 9999999999999998
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
...+|++.+++|....++.|+.-... |+.+-... ...|-..+....+ ..++..+++|-+
T Consensus 230 te~PvN~aaisP~~d~VilgGGqeA~---dVTTT~~r----------------~GKFEArFyh~i~--eEEigrvkGHFG 288 (327)
T KOG0643|consen 230 TERPVNTAAISPLLDHVILGGGQEAM---DVTTTSTR----------------AGKFEARFYHLIF--EEEIGRVKGHFG 288 (327)
T ss_pred ecccccceecccccceEEecCCceee---eeeeeccc----------------ccchhhhHHHHHH--HHHhcccccccc
Confidence 45799999999987777776532222 33322100 0011111111111 123678999999
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+|++|+|+|+|+..++|++||.|++..++..
T Consensus 289 PINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 289 PINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred CcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 9999999999999999999999999988653
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.9e-36 Score=257.88 Aligned_cols=284 Identities=15% Similarity=0.181 Sum_probs=241.5
Q ss_pred ccCCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
....+|...|+++.|.| .+.+|++++ |+.|+||++-... ...+++. +|...|.++.|+.++..+++++.| +
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD-----~ 280 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-RCLRTFK-GHRKPVRDASFNNCGTSFLSASFD-----R 280 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-ceehhhh-cchhhhhhhhccccCCeeeeeecc-----e
Confidence 57889999999999999 788888888 6669999996632 2337776 899999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCc-cEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.|++||+++|+++..+.....++++.|+|++ ..++ +|+.|+.||+++++.++++..|-+.+..+.|-+++..++..
T Consensus 281 ~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999999999999999999999999987 3333 49999999999999999999999999999999999877543
Q ss_pred eecCCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC---ceEEEEEeCCCcCceE
Q 014007 233 CPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIY 307 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~---~~~~~~~~~~~~~~i~ 307 (432)
+.|+.++||+.+......+ ..+.-...++..+|++++++.-+.|+. |.+|.+... ...+.|.++.-.+.-.
T Consensus 361 ---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~-i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 361 ---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY-IAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred ---ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce-EEEEecccccccCHhhhhcceeccCcee
Confidence 4899999999998554332 233445678999999999999999999 999986542 2334566655556778
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
.+.|||||++|++|+.||.+.+||.++-+. +..++.|++.+..+.
T Consensus 437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-----------------------------------~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 437 QVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-----------------------------------VSKLKAHDQPCIGVD 481 (503)
T ss_pred eEEEcCCCCeEEeecCCccEEEeechhhhh-----------------------------------hhccccCCcceEEEE
Confidence 899999999999999999999999998774 345788999999999
Q ss_pred Ecc-CCCEEEEEecCCeEEEEE
Q 014007 388 FGH-QKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 388 ~s~-~~~~l~~~~~dg~v~iw~ 408 (432)
|+| ....||+++.||.|++|+
T Consensus 482 wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ecCCCcceeEecccCceeEecC
Confidence 999 456899999999999995
No 28
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=222.32 Aligned_cols=280 Identities=15% Similarity=0.237 Sum_probs=234.0
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEE-EcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAA-GTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
....+..|.++|..+.|+-||+|.++ |+|++|++|+...+.++ +++. +|...|.+.+.+.+...+++++.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--ktYs-ghG~EVlD~~~s~Dnskf~s~GgD----- 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--KTYS-GHGHEVLDAALSSDNSKFASCGGD----- 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--eeec-CCCceeeeccccccccccccCCCC-----
Confidence 34567889999999999999998655 45888999997766555 7776 899999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC--CeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
..|.+||+.+|+.++.+. |...|+.++|+.+...+++ |..+++||.+. .++++.+....+.+..+.++.. .
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---e 157 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---E 157 (307)
T ss_pred ceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---E
Confidence 999999999999999999 9999999999999998884 89999999986 4678888877788877777654 2
Q ss_pred EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
+ + +|+.||+++.||++.+.+..- -...+|+|+.|+++++.+++++.|++ |++.|-.+|+++..++++.....-..+
T Consensus 158 I-v-aGS~DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 158 I-V-AGSVDGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred E-E-eeccCCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeee
Confidence 3 3 477999999999998765431 23568999999999999999999999 999999999999999987655566777
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC-ceEEEE
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS-PYIVAF 388 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~ 388 (432)
+++.....+++|++||.|++||+.....+ ..+..+... |..+.+
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~-----------------------------------sk~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQI-----------------------------------SKLSVVSTVIVTDLSC 278 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceee-----------------------------------eeeccCCceeEEeeec
Confidence 88888889999999999999999987742 234455554 788999
Q ss_pred ccCCCEEEEEecCCeEEE
Q 014007 389 GHQKNTVVILGMDGSFYR 406 (432)
Q Consensus 389 s~~~~~l~~~~~dg~v~i 406 (432)
+|.-..++++...+.+..
T Consensus 279 hp~~~~f~~A~~~~~~~~ 296 (307)
T KOG0316|consen 279 HPTMDDFITATGHGDLFW 296 (307)
T ss_pred ccCccceeEecCCceece
Confidence 998887887775554433
No 29
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.4e-34 Score=226.36 Aligned_cols=274 Identities=18% Similarity=0.260 Sum_probs=227.8
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (432)
....+|...|.+++|+.+|..|++|+ ++.+++|+++..+........ +|...|..++|++. ...+++++.| .
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~-gh~~svdql~w~~~~~d~~atas~d-----k 87 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYR-GHTDSVDQLCWDPKHPDLFATASGD-----K 87 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhccc-CCCcchhhheeCCCCCcceEEecCC-----c
Confidence 44667899999999999999999999 666999999877555444444 78888888888653 3455666666 8
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
+|++||+..+++...+.....-.-+.|+|+|.+++. |..|.+.|.++.+.....+. ...+..++|+ ..+.+++++
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~-~~nd~Fflt 165 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWN-NSNDLFFLT 165 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeec-CCCCEEEEe
Confidence 999999999999999996666677899999998885 77899999998877766543 3445678888 445566666
Q ss_pred ecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
.| .|.|.|..... +++..+.+|.....||.|+|+|++||+|+.|.. +.+||+...-|++.+.. +.-+|..+.||
T Consensus 166 ~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isR--ldwpVRTlSFS 240 (313)
T KOG1407|consen 166 NG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISR--LDWPVRTLSFS 240 (313)
T ss_pred cC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeecc--ccCceEEEEec
Confidence 44 69999988877 778889999999999999999999999999999 99999999999999986 56899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
.||++||+|++|..|-|=++++|..+. .+ .++++...|+|+|..
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~--------------------------------eI----~~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVW--------------------------------EI----PCEGPTFTVAWHPKR 284 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEE--------------------------------Ee----eccCCceeEEecCCC
Confidence 999999999999999999999998432 12 256778899999999
Q ss_pred CEEEEEecC
Q 014007 393 NTVVILGMD 401 (432)
Q Consensus 393 ~~l~~~~~d 401 (432)
.+||-++.|
T Consensus 285 ~LLAyA~dd 293 (313)
T KOG1407|consen 285 PLLAYACDD 293 (313)
T ss_pred ceeeEEecC
Confidence 999988875
No 30
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=226.37 Aligned_cols=254 Identities=15% Similarity=0.230 Sum_probs=216.6
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~ 197 (432)
+.++ +|...|.++.|+++.+.+++++.| |.+.|||.-+...+..++ ....|...+|+|.|.+++ .|+...
T Consensus 49 r~Lk-GH~~Ki~~~~ws~Dsr~ivSaSqD-----GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 49 RTLK-GHLNKIYAMDWSTDSRRIVSASQD-----GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEec-ccccceeeeEecCCcCeEEeeccC-----CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 5666 899999999999999999999999 999999999988888888 678899999999999999 488999
Q ss_pred EEEcCCC------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcC-C
Q 014007 198 VYNFADL------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQ-D 269 (432)
Q Consensus 198 i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp-~ 269 (432)
||++.+. +..+.+.+|.+-+.++.|-.|+. ++. |+.|.++.+||++++ .+..+.+|.+.|.+++++| +
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT--~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~ 198 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILT--GSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSD 198 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCCc--eEe--cCCCceEEEEEcccceEEEEecCCcccEEEEecCCCC
Confidence 9999854 34567888999999999988653 332 446999999999995 5667899999999999999 9
Q ss_pred CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349 (432)
Q Consensus 270 ~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (432)
++.+++|+-|+. .++||++.+.+++.|.+ |+..|++++|.|+|.-+++|++|++.++||++..+++..+.
T Consensus 199 ~ntFvSg~cD~~-aklWD~R~~~c~qtF~g--hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys------- 268 (343)
T KOG0286|consen 199 GNTFVSGGCDKS-AKLWDVRSGQCVQTFEG--HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS------- 268 (343)
T ss_pred CCeEEecccccc-eeeeeccCcceeEeecc--cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-------
Confidence 999999999999 99999999999999996 67999999999999999999999999999999987543221
Q ss_pred CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007 350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN 423 (432)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 423 (432)
-..-...|++++||..|++|++|..|.++.+|+. -+++....+..|
T Consensus 269 --------------------------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt--lk~e~vg~L~GH 314 (343)
T KOG0286|consen 269 --------------------------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT--LKGERVGVLAGH 314 (343)
T ss_pred --------------------------cCcccCCceeEEEcccccEEEeeecCCceeEeec--cccceEEEeecc
Confidence 1111246999999999999999999999999986 334444444443
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.8e-33 Score=230.49 Aligned_cols=282 Identities=13% Similarity=0.138 Sum_probs=239.5
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
.......|.+.|.+++.+|+.+++++|+ |+.-.||++.++... ..+. +|...|+++.|+.++.++++|+.+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--~elt-gHKDSVt~~~FshdgtlLATGdms----- 127 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--GELT-GHKDSVTCCSFSHDGTLLATGDMS----- 127 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--eEec-CCCCceEEEEEccCceEEEecCCC-----
Confidence 3456778999999999999999999998 666999999888854 5565 899999999999999999999999
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
|.|+||...++.....+. ....+.-+.|+|.+.++++ ||.+.+|.+..+...+.+.+|..++++=.|.|+|++++.
T Consensus 128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT 207 (399)
T ss_pred ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE
Confidence 999999999998888886 6677888999999888874 999999999998888999999999999999999998765
Q ss_pred EeecCCCCcEEEEEccCCce-eeee---------------------------------------------------ccCC
Q 014007 232 VCPGLQKGQVRVEHYASKRT-KFIM---------------------------------------------------AHDS 259 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~-~~~~---------------------------------------------------~~~~ 259 (432)
+ ..||+|++|+..+... ..+. .+..
T Consensus 208 g---y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~ 284 (399)
T KOG0296|consen 208 G---YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEE 284 (399)
T ss_pred E---ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchh
Confidence 4 4799999999987321 0000 1122
Q ss_pred ceeEEEEc---CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 260 RIACFALT---QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 260 ~i~~~~~s---p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.+.|+.+. ..-.+.|+|+.||+ |.|||+...++.+.+. |+..|..+.|-+ ..+|++++.+|.|+.||.++++
T Consensus 285 ~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~~~~R~~c~---he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 285 LDESVESIPSSSKLPLAACGSVDGT-IAIYDLAASTLRHICE---HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhcccccccchhhcccccce-EEEEecccchhheecc---CCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 23333333 34467889999999 9999999988888887 888999999988 7899999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
. ...+.+|...|.+++.+|+.+++++++.|++.+||.+
T Consensus 360 l-----------------------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 360 L-----------------------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred e-----------------------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 4 4568899999999999999999999999999999876
No 32
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-34 Score=226.73 Aligned_cols=286 Identities=14% Similarity=0.158 Sum_probs=244.8
Q ss_pred cccCCCCCCCeEEEEEcC---CCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQ---DHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
..+..+|..+|..++||| +|-+|++++.+ .-.+-+-+++.-+ .+|. +|...|+....+.+-...+++..|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwi--gtfe-ghkgavw~~~l~~na~~aasaaad--- 80 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWI--GTFE-GHKGAVWSATLNKNATRAASAAAD--- 80 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcE--Eeee-ccCcceeeeecCchhhhhhhhccc---
Confidence 456789999999999985 78889999844 4666676777666 7776 899999999999999889999998
Q ss_pred CCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcE
Q 014007 154 PLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
-+-++||.-+|..+..++|..-|.+++|+.|..++++ +.-++|||++.. .+..++.+|...|+.+.|....+.+
T Consensus 81 --ftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~i 158 (334)
T KOG0278|consen 81 --FTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCI 158 (334)
T ss_pred --chhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceE
Confidence 8999999999999999999999999999999999886 457999998874 4567888999999999998876654
Q ss_pred EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
+ .+ ..|+.|++||.+++..........+|+++.++++|++|.++.. +. |.+||..+..+++.++ .+..|.+.
T Consensus 159 L-SS--add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-ss-V~Fwdaksf~~lKs~k---~P~nV~SA 230 (334)
T KOG0278|consen 159 L-SS--ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-SS-VKFWDAKSFGLLKSYK---MPCNVESA 230 (334)
T ss_pred E-ee--ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-ce-eEEeccccccceeecc---Cccccccc
Confidence 3 32 5899999999999776655566788999999999998866654 45 9999999999999988 45789999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG 389 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 389 (432)
.++|+...+++|++|+.++.||..+++.+.. ..++|-++|.+|.|+
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~TgeEi~~----------------------------------~nkgh~gpVhcVrFS 276 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS----------------------------------YNKGHFGPVHCVRFS 276 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCceeee----------------------------------cccCCCCceEEEEEC
Confidence 9999999999999999999999999984311 147899999999999
Q ss_pred cCCCEEEEEecCCeEEEEEecCCC
Q 014007 390 HQKNTVVILGMDGSFYRCQFDPVN 413 (432)
Q Consensus 390 ~~~~~l~~~~~dg~v~iw~~~~~~ 413 (432)
|||..-++|++||+|+||...+.+
T Consensus 277 PdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 277 PDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999999998753
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.1e-32 Score=272.00 Aligned_cols=291 Identities=14% Similarity=0.193 Sum_probs=225.0
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe----e--EEEeecccCcceeEEEEeeeC-CeEEEecCCCCCC
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----E--IFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQ 152 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~----~--~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~ 152 (432)
...|.+.|++++|+|+|++||+|+ |+.|+||++.... . .....+. +...+.+++|++ .+..+++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~D-- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNFE-- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeCC--
Confidence 344899999999999999999998 4559999975321 0 0112232 445788889876 46788999988
Q ss_pred CCCCeEEEEeCCCCceeEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
++|++||+.+++.+..+. |...|++++|+| ++.++++ |+.|++||++++..+..+..+ ..+.++.|.+...
T Consensus 555 ---g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g 630 (793)
T PLN00181 555 ---GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG 630 (793)
T ss_pred ---CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence 999999999999888887 999999999997 6777763 899999999999888887654 5677788865433
Q ss_pred cEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC------ceEEEEEe
Q 014007 228 SLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------TLLQEVRR 299 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------~~~~~~~~ 299 (432)
.. +++ |+.|+.|++||++.. ....+.+|...|.++.|. ++.+|++++.|+. |++||++.+ +++..+.+
T Consensus 631 ~~-lat-gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 631 RS-LAF-GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred CE-EEE-EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC
Confidence 32 333 458999999999874 356678999999999997 7789999999999 999999743 56777775
Q ss_pred CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceee--EEEE
Q 014007 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSV--AQFR 377 (432)
Q Consensus 300 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 377 (432)
|...+..++|++++.+|++|+.|+.|++|+......+.... +...+.. ....
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~------------------------~~~~~~~~~~~~~ 760 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK------------------------FKTIDPVSGLEVD 760 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe------------------------cccCCcccccccC
Confidence 66789999999999999999999999999987654221100 0000000 0122
Q ss_pred ecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 378 LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 378 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
.+...|.+++|+|++..|++|+.||.|+||++
T Consensus 761 ~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 761 DASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 34567999999999999999999999999986
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=7.8e-35 Score=241.55 Aligned_cols=280 Identities=14% Similarity=0.274 Sum_probs=229.6
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
.......|+|+.+.. ..+++|. |++|+|||.++..+. +.+. +|.+.|.++.|... .+++|+.| .+|+
T Consensus 193 ~Se~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~--~~L~-GHtGSVLCLqyd~r--viisGSSD-----sTvr 260 (499)
T KOG0281|consen 193 RSENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECL--KILT-GHTGSVLCLQYDER--VIVSGSSD-----STVR 260 (499)
T ss_pred CcccCCceEEEEecc--hhhhcccccCceEEeccccHHHH--Hhhh-cCCCcEEeeeccce--EEEecCCC-----ceEE
Confidence 344678999999964 4677777 888999998877665 5665 89999999998765 89999999 9999
Q ss_pred EEeCCCCceeEEee-cCCceEEEEEecCccEEEe-CCeEEEEEcCCCe---eeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
+||+++|+++.++- |...|..+.|+..-..-++ |.++.+||+.... +.+.+.+|...++.+.|+.. ++++
T Consensus 261 vWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k----yIVs- 335 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK----YIVS- 335 (499)
T ss_pred EEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc----eEEE-
Confidence 99999999999988 8999999999865444444 8999999987643 34456788888888877654 3443
Q ss_pred cCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 235 g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
.+.|.+|++|++.+ ..++++.+|...|.|+.+ .|+++++|+.|.+ |++||+..|.+++.+++ |+.-|.++.|
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeG--HEeLvRciRF-- 408 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF-- 408 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhc--hHHhhhheee--
Confidence 34699999999998 456788999999999988 7899999999999 99999999999999996 6789999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN 393 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 393 (432)
|.+.+++|+.||+|+|||+..+..... .....++.++..|.+.|..+.| |..
T Consensus 409 d~krIVSGaYDGkikvWdl~aaldpra--------------------------~~~~~Cl~~lv~hsgRVFrLQF--D~f 460 (499)
T KOG0281|consen 409 DNKRIVSGAYDGKIKVWDLQAALDPRA--------------------------PASTLCLRTLVEHSGRVFRLQF--DEF 460 (499)
T ss_pred cCceeeeccccceEEEEecccccCCcc--------------------------cccchHHHhhhhccceeEEEee--cce
Confidence 668899999999999999998763321 1222234566778899999998 567
Q ss_pred EEEEEecCCeEEEEEecCC
Q 014007 394 TVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 394 ~l~~~~~dg~v~iw~~~~~ 412 (432)
.+++++.|.+|.||++...
T Consensus 461 qIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEEeccCCCeEEEEEcCCC
Confidence 8999999999999999664
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=222.59 Aligned_cols=245 Identities=13% Similarity=0.169 Sum_probs=212.1
Q ss_pred cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEE
Q 014007 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYN 200 (432)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d 200 (432)
.+|...|..+.|+|++.++++++.| ..|.+|++.. -+....++ |.+.|..+.|.+|+..+++ |.+|+.||
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~D-----r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSD-----RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCc-----ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 4899999999999999999999999 9999999543 34455666 9999999999999998884 89999999
Q ss_pred cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC
Q 014007 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 280 (432)
.++|+.++.++.|...++.+. |......++++|+.|+++++||++.+...........++++.|..++..+.+|+.|+
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 999999999999999888777 666666778889999999999999877666666678899999999999999999999
Q ss_pred ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK 360 (432)
Q Consensus 281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
. |++||++.+..++.+.+ |..+|+.+..+++|.++.+-+.|.++++||++-...
T Consensus 197 ~-ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p----------------------- 250 (338)
T KOG0265|consen 197 D-IKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP----------------------- 250 (338)
T ss_pred c-eeeeccccCcceEEeec--ccCceeeEEeccCCCccccccccceEEEEEecccCC-----------------------
Confidence 9 99999999999999996 668999999999999999999999999999987542
Q ss_pred ecccceeecceeeEEEEecC----CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 361 GVLPKYFSSEWSVAQFRLVE----GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
..+++..+.+|. .....++|+|+++.+.+|+.|..+++|+...
T Consensus 251 --------~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 251 --------SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred --------CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 223344444443 2456789999999999999999999998644
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=244.14 Aligned_cols=278 Identities=13% Similarity=0.174 Sum_probs=237.0
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...+++.|.++.|+|...+++++- .+.|.|||.++...+ +.+. -...+|.+..|-.....+++|++| ..|+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV--ksfe-V~~~PvRa~kfiaRknWiv~GsDD-----~~Ir 80 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV--KSFE-VSEVPVRAAKFIARKNWIVTGSDD-----MQIR 80 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceee--eeee-ecccchhhheeeeccceEEEecCC-----ceEE
Confidence 344889999999999999888887 555999998877665 5564 577888999999999999999999 9999
Q ss_pred EEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
+|+..+++.+..|+ |..-|++++.+|...++.+ |-+|++||.+.. .+.+++++|.+-|..++|.|.....+ ++
T Consensus 81 Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntF-aS- 158 (794)
T KOG0276|consen 81 VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTF-AS- 158 (794)
T ss_pred EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccce-ee-
Confidence 99999999999999 9999999999999988884 568999999864 67889999999999999999887765 33
Q ss_pred cCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC--CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 235 GLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 235 g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
++-|++|++|.+.+ .+..++.+|...|+|+.|-+.| .+|++|+.|.+ |+|||..+..|++++.+ |...|..+.|
T Consensus 159 ~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeG--Ht~Nvs~v~f 235 (794)
T KOG0276|consen 159 ASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEG--HTNNVSFVFF 235 (794)
T ss_pred eeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhc--ccccceEEEe
Confidence 45899999999988 4567889999999999998744 69999999999 99999999999999997 5578999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 391 (432)
+|.-..+++|++||+++||+..+.+..+. +...-++|++++-.+.
T Consensus 236 hp~lpiiisgsEDGTvriWhs~Ty~lE~t-----------------------------------Ln~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 236 HPELPIIISGSEDGTVRIWNSKTYKLEKT-----------------------------------LNYGLERVWCIAAHKG 280 (794)
T ss_pred cCCCcEEEEecCCccEEEecCcceehhhh-----------------------------------hhcCCceEEEEeecCC
Confidence 99999999999999999999998875432 2223345777777777
Q ss_pred CCEEEEEecCCeEEE
Q 014007 392 KNTVVILGMDGSFYR 406 (432)
Q Consensus 392 ~~~l~~~~~dg~v~i 406 (432)
++.+++|...|.|.+
T Consensus 281 ~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 281 DGKIAVGFDEGSVTV 295 (794)
T ss_pred CCeEEEeccCCcEEE
Confidence 777777777776654
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-33 Score=231.87 Aligned_cols=257 Identities=12% Similarity=0.168 Sum_probs=225.3
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. ++...|+.+.|+|+...++++++| ++|++||..++++...++ |...+.+++|+..|+++++ |-.++
T Consensus 102 ~~l~-g~r~~vt~v~~hp~~~~v~~as~d-----~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 102 QKLA-GHRSSVTRVIFHPSEALVVSASED-----ATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred hhhh-ccccceeeeeeccCceEEEEecCC-----ceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 4454 689999999999999999999999 999999999999999998 9999999999999999994 55699
Q ss_pred EEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEE
Q 014007 198 VYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLAT 275 (432)
Q Consensus 198 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~ 275 (432)
+||..+ .++++.+.+|...+.+++|-|.|+++ ++ .+.|.+|+.|++.++ .++++.+|...|..++.+.||.++|+
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~i--lS-~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHI--LS-CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCCee--ee-cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 999987 57778888999999999999999754 33 348999999999995 67789999999999999999999999
Q ss_pred EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC---------------CCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007 276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN---------------AQWLAVSSDKGTVHVFNLKVNSGSAR 340 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~ 340 (432)
++.|.+ |++|-+.++++...+.. |+-+|-+++|-|. ++++.+++.|++|++||+.++.+
T Consensus 253 ~s~dqt-l~vW~~~t~~~k~~lR~--hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c--- 326 (406)
T KOG0295|consen 253 CSNDQT-LRVWVVATKQCKAELRE--HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC--- 326 (406)
T ss_pred cCCCce-EEEEEeccchhhhhhhc--cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE---
Confidence 999999 99999999999888886 5578999998762 35899999999999999999873
Q ss_pred CCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007 341 SEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 420 (432)
+.++.+|++.|..++|+|.|++|+++.+|+++++|++.. +..+..+
T Consensus 327 --------------------------------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~--~~cmk~~ 372 (406)
T KOG0295|consen 327 --------------------------------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN--LQCMKTL 372 (406)
T ss_pred --------------------------------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecc--ceeeecc
Confidence 668999999999999999999999999999999999844 4555566
Q ss_pred eecccCC
Q 014007 421 EYNNFLK 427 (432)
Q Consensus 421 ~~~~~~~ 427 (432)
+.++.+-
T Consensus 373 ~ah~hfv 379 (406)
T KOG0295|consen 373 EAHEHFV 379 (406)
T ss_pred CCCccee
Confidence 6665543
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-32 Score=247.56 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=237.0
Q ss_pred cccCCCCCCCeEEEEE-cCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISF-NQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
...+-+-.+.|..|+| .|+.++||++++.. +|+|++.+..+. .+. +|...|.++....++.++++++.|
T Consensus 316 ~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~-GH~e~vlSL~~~~~g~llat~sKD----- 386 (775)
T KOG0319|consen 316 VKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIP-GHTEAVLSLDVWSSGDLLATGSKD----- 386 (775)
T ss_pred ehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEe-CchhheeeeeecccCcEEEEecCC-----
Confidence 3455667788999988 56778999998666 999988776654 343 899999999966777999999999
Q ss_pred CeEEEEeCCCCc----eeEEee-cCCceEEEEEecCcc-EEE---eCCeEEEEEcCCCee-----e----EEEeeccCCc
Q 014007 156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKL-----L----HQIETIANPK 217 (432)
Q Consensus 156 ~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~-----~----~~~~~~~~~~ 217 (432)
.++++|.++++. ++.... |.+.|.+++++..+. +++ .|.++++|++...+. . .....|...|
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 999999875442 334444 999999999987654 333 289999999986221 1 1234688899
Q ss_pred ceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
++++++|+.. +++ +|+.|.+.+||++.... ..++.+|...|.|+.|+|..+.|+|+|.|.+ |+||.+.+..|+++
T Consensus 467 N~Vaia~ndk--LiA-T~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT 542 (775)
T KOG0319|consen 467 NCVAIAPNDK--LIA-TGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKT 542 (775)
T ss_pred cceEecCCCc--eEE-ecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeee
Confidence 9999999976 445 46799999999999744 4578999999999999999999999999999 99999999999999
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF 376 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (432)
|.+ |...|..+.|-.+|+.|++++.||-|++|++++.+++ .++
T Consensus 543 ~eG--H~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~-----------------------------------~tl 585 (775)
T KOG0319|consen 543 FEG--HTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE-----------------------------------MTL 585 (775)
T ss_pred ecC--ccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh-----------------------------------hhh
Confidence 996 6799999999999999999999999999999999864 467
Q ss_pred EecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 377 RLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 377 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
..|++.|++++.++...++++|+.||.|.+|.=
T Consensus 586 D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 586 DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred hhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 789999999999999999999999999999974
No 39
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.1e-32 Score=245.26 Aligned_cols=283 Identities=20% Similarity=0.310 Sum_probs=221.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE--EEecCCCCCCCCCCe
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLNK 157 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~~~~ 157 (432)
...|..+|.-++|+|.|.+|++|+ |+.+++||+....+. ..|+ +|.+.|..+.|+|+.. .+++|..| +.
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~t--h~fk-G~gGvVssl~F~~~~~~~lL~sg~~D-----~~ 172 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCT--HSFK-GHGGVVSSLLFHPHWNRWLLASGATD-----GT 172 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEE--EEec-CCCceEEEEEeCCccchhheeecCCC-----ce
Confidence 344999999999999999999998 666999999877766 7787 8999999999988654 58888888 99
Q ss_pred EEEEeCCCCce-eEEee-cCCceEEEEEecCcc-----------------------------------------------
Q 014007 158 VMIWDDHQSRC-IGELS-FRSEVRSVKLRRDRI----------------------------------------------- 188 (432)
Q Consensus 158 v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~----------------------------------------------- 188 (432)
|++||+.+... +..+. |.+.|+++++++|+.
T Consensus 173 v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~ 252 (775)
T KOG0319|consen 173 VRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEY 252 (775)
T ss_pred EEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceE
Confidence 99999875432 44444 555555555555542
Q ss_pred --------------------------------------------------------------------------------
Q 014007 189 -------------------------------------------------------------------------------- 188 (432)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (432)
T Consensus 253 ~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l 332 (775)
T KOG0319|consen 253 IITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL 332 (775)
T ss_pred EEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeec
Confidence
Q ss_pred ----------------------------------------------EEEe---CCeEEEEEcCCCe----eeEEEeeccC
Q 014007 189 ----------------------------------------------IVVL---EQKIFVYNFADLK----LLHQIETIAN 215 (432)
Q Consensus 189 ----------------------------------------------~~~~---d~~i~i~d~~~~~----~~~~~~~~~~ 215 (432)
++++ |.++++|.++++. ++....+|.+
T Consensus 333 G~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~ 412 (775)
T KOG0319|consen 333 GPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTN 412 (775)
T ss_pred CCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccc
Confidence 2221 3444444442211 1223344555
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----e------eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----T------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
.+.+++++..+..+ +++ ++.|+++++|++...+ . .....|...|+|++++|+.+++|||+.|.+ .+|
T Consensus 413 svgava~~~~~asf-fvs-vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt-aKi 489 (775)
T KOG0319|consen 413 SVGAVAGSKLGASF-FVS-VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT-AKI 489 (775)
T ss_pred ccceeeecccCccE-EEE-ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc-eee
Confidence 55666665554444 343 4689999999998711 1 123579999999999999999999999999 999
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (432)
|++..++.+.++.+ |...|+++.|+|..+.++++|.|++|+||.+.+..+
T Consensus 490 W~le~~~l~~vLsG--H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC---------------------------- 539 (775)
T KOG0319|consen 490 WDLEQLRLLGVLSG--HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC---------------------------- 539 (775)
T ss_pred ecccCceEEEEeeC--CccceEEEEeccccceeEeccCCceEEEEEecccee----------------------------
Confidence 99999999999996 678999999999999999999999999999999875
Q ss_pred eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.++.+|...|..+.|-.+|+.|++++.||-+++|++..
T Consensus 540 -------lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 540 -------LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred -------eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 557889999999999999999999999999999999855
No 40
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-30 Score=226.59 Aligned_cols=304 Identities=15% Similarity=0.180 Sum_probs=240.1
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~ 169 (432)
-|.-.|.|..++....+.|.+-+++..... ..+. .|...++-..|+|.|.++++|+.. |+|+|||....+.+
T Consensus 23 ~ig~dpkgd~ilY~nGksv~ir~i~~~~~~--~iYt-EH~~~vtVAkySPsG~yiASGD~s-----G~vRIWdtt~~~hi 94 (603)
T KOG0318|consen 23 IIGGDPKGDNILYTNGKSVIIRNIDNPASV--DIYT-EHAHQVTVAKYSPSGFYIASGDVS-----GKVRIWDTTQKEHI 94 (603)
T ss_pred EeccCCCCCeEEEeCCCEEEEEECCCccce--eeec-cccceeEEEEeCCCceEEeecCCc-----CcEEEEeccCccee
Confidence 356678888888887777888888776654 3443 688888888999999999999998 99999998764433
Q ss_pred --EEee-cCCceEEEEEecCccEEEe--CC-----eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 170 --GELS-FRSEVRSVKLRRDRIIVVL--EQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 170 --~~~~-~~~~v~~~~~~~~~~~~~~--d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
.+++ ..++|..|+|+.+++.++. +| .+.+|| +|..+-++.+|...+..+.|-|.....+ + ++++|+
T Consensus 95 LKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi-~-T~sdDn 170 (603)
T KOG0318|consen 95 LKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRI-A-TGSDDN 170 (603)
T ss_pred eeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEE-E-eccCCC
Confidence 3444 7899999999999988884 32 466666 6778888999999999999999877654 3 356999
Q ss_pred cEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE-eCCCcCceEEEEECCCCCE
Q 014007 240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQW 317 (432)
Q Consensus 240 ~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~ 317 (432)
.|.+|+-.- +-...+..|..-|+|+.|+|||.++++.+.||+ |.+||-.+++.+..+. ...|.+.|..++|+||++.
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgk-i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~ 249 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGK-IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQ 249 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCcc-EEEEcCCCccEEEEecCCCCccccEEEEEECCCCce
Confidence 999997544 223456789999999999999999999999999 9999999999999998 3458899999999999999
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCCCCCC-------CCC-------CCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007 318 LAVSSDKGTVHVFNLKVNSGSARSEPRST-------SDP-------TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (432)
Q Consensus 318 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 383 (432)
|++++.|.+++|||+.+.+.+++...... ..+ .+....+.|+... .......+.+|...|
T Consensus 250 ~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~------d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 250 FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPS------DPSVLKVISGHNKSI 323 (603)
T ss_pred EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEeccc------CCChhheecccccce
Confidence 99999999999999999987776652222 000 1111111111100 011255788999999
Q ss_pred eEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 384 YIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+++..++|+++|++|+.||.|.-|+....
T Consensus 324 TaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred eEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 99999999999999999999999998654
No 41
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.6e-32 Score=246.81 Aligned_cols=266 Identities=16% Similarity=0.219 Sum_probs=214.1
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD 186 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 186 (432)
+.+.|-+..... +.+. +|..+|....|+|+..+|++++.| ++|++|.+.+..++-.++ |..+|+.+.|+|-
T Consensus 433 ~~~~D~~~~~~~--~~L~-GH~GPVyg~sFsPd~rfLlScSED-----~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~ 504 (707)
T KOG0263|consen 433 VDMLDDDSSGTS--RTLY-GHSGPVYGCSFSPDRRFLLSCSED-----SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR 504 (707)
T ss_pred hhhccccCCcee--EEee-cCCCceeeeeecccccceeeccCC-----cceeeeecccceeEEEecCCCcceeeEEecCC
Confidence 445554333332 4455 899999999999999999999999 999999999999999998 9999999999999
Q ss_pred ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCcee
Q 014007 187 RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIA 262 (432)
Q Consensus 187 ~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~ 262 (432)
|.++++ |++-++|.....++++.+.+|...+.++.|+|+..+ ++ +|+.|.+|++||+.++ .++.+.+|.++|.
T Consensus 505 GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y--~a-TGSsD~tVRlWDv~~G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 505 GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNY--VA-TGSSDRTVRLWDVSTGNSVRIFTGHKGPVT 581 (707)
T ss_pred ceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccc--cc-cCCCCceEEEEEcCCCcEEEEecCCCCceE
Confidence 999995 889999999999999999999999999999999874 44 4679999999999884 5677889999999
Q ss_pred EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 342 (432)
+++|||+|++|++|+.|+. |.+||+.+++.+..+.+ |.+.|.++.||.||..||+|+.|++|++||+..........
T Consensus 582 al~~Sp~Gr~LaSg~ed~~-I~iWDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~ 658 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGL-IKIWDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLG 658 (707)
T ss_pred EEEEcCCCceEeecccCCc-EEEEEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccc
Confidence 9999999999999999999 99999999999999986 57999999999999999999999999999998765431000
Q ss_pred CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007 343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL 398 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 398 (432)
..+.... ............+..+.....+|..+.|.-.+-.|++|
T Consensus 659 ~~~~~~~-----------~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 659 HISTSNS-----------AITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccc-----------cccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 0000000 00000001112244555556678889998766555554
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=241.10 Aligned_cols=281 Identities=14% Similarity=0.166 Sum_probs=244.4
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
-...+|...|.++++|.+...+++|+.+.++||+.++.++. +++. ...+.+..|-|...+++.|... |.+
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kci--RTi~---~~y~l~~~Fvpgd~~Iv~G~k~-----Gel 436 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCI--RTIT---CGYILASKFVPGDRYIVLGTKN-----GEL 436 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCccee--EEec---cccEEEEEecCCCceEEEeccC-----Cce
Confidence 45678999999999999999999998888999999988887 5553 2388899999999999999998 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC-----Ceee--------EEEeeccCCcceEE
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-----LKLL--------HQIETIANPKGLCA 221 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~-----~~~~--------~~~~~~~~~~~~~~ 221 (432)
.+||+.+...+.+++ |.+.|+.++.+||+..+++ |.+|++||..- +... +++ ...+.+.++.
T Consensus 437 ~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~ 515 (888)
T KOG0306|consen 437 QVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVS 515 (888)
T ss_pred EEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEE
Confidence 999999999888888 9999999999999987773 89999999742 1111 122 2356788999
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~ 300 (432)
++||++.+++. --|.+|+||-+++-+ ...+.+|.-+|.||.++||++.++||+.|.+ |++|-+.=|.|-+.+-.
T Consensus 516 ~Spdgk~LaVs---LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fA- 590 (888)
T KOG0306|consen 516 VSPDGKLLAVS---LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFA- 590 (888)
T ss_pred EcCCCcEEEEE---eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhc-
Confidence 99999866543 489999999999844 4568899999999999999999999999999 99999999999988875
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (432)
|...|.++.|-|+...+.+++.|+.|+-||-...+. +..+.+|.
T Consensus 591 -HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-----------------------------------iq~L~~H~ 634 (888)
T KOG0306|consen 591 -HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-----------------------------------IQKLDGHH 634 (888)
T ss_pred -ccCceeEEEEcccceeEEEecCcceEEeechhhhhh-----------------------------------heeeccch
Confidence 778999999999999999999999999999988774 45678899
Q ss_pred CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
..|++++.+|+|.++++++.|.+|++|.-..
T Consensus 635 ~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 635 SEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred heeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9999999999999999999999999998644
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-33 Score=233.70 Aligned_cols=243 Identities=14% Similarity=0.190 Sum_probs=213.6
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.+...|...|+++.|+++|.++++|+.++ |++|+.+-.. + +.+..+|...|.+++|+|+...++++++| |+
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-V--k~~~ahh~eaIRdlafSpnDskF~t~SdD-----g~ 203 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-V--KIIQAHHAEAIRDLAFSPNDSKFLTCSDD-----GT 203 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-h--HHhhHhhhhhhheeccCCCCceeEEecCC-----Ce
Confidence 56788999999999999999999999777 9999864322 2 33443566999999999999999999999 99
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
|+|||....+....+. |.-.|.+++|+|..-++++ |+.|++||.++++++.++..|++.|..+.|.++++.+ ++
T Consensus 204 ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~L--lt 281 (464)
T KOG0284|consen 204 IKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWL--LT 281 (464)
T ss_pred EEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCee--EE
Confidence 9999999888888888 9999999999998877775 7799999999999999999999999999999999643 43
Q ss_pred ecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
++.|..++++|+++ +++..+++|...++++.|+| ...+|.+|+.||. |..|.+...+.+..+.. +|...|++++|
T Consensus 282 -~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~~~p~~~i~~-AHd~~iwsl~~ 358 (464)
T KOG0284|consen 282 -GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGLEEPLGEIPP-AHDGEIWSLAY 358 (464)
T ss_pred -ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccccccccCCCc-ccccceeeeec
Confidence 45999999999995 77888999999999999999 5678899999999 99999886777766664 48899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+|-|..|++|+.|.++++|....
T Consensus 359 hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred cccceeEeecCCCcceeeeccCC
Confidence 99999999999999999997654
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.3e-30 Score=242.32 Aligned_cols=255 Identities=21% Similarity=0.309 Sum_probs=212.3
Q ss_pred ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeE
Q 014007 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKI 196 (432)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i 196 (432)
.+...+...+.++.|++++..+++++.+ +.+++|+...++ ....+. |...|.+++|+|++.++++ |++|
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~-----~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSD-----GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCC-----CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 3333457888999999999999999998 999999997777 666665 9999999999999998884 8999
Q ss_pred EEEEc-CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEE
Q 014007 197 FVYNF-ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 197 ~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (432)
+|||+ ..+..++++.+|...+.+++|+|+++ + ++ +|+.|+.|++||+++ .....+.+|...|.+++|++++++|+
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~-~-i~-Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGN-L-LV-SGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCCC-E-EE-EecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 99999 45689999999999999999999994 3 33 356899999999998 56678999999999999999999999
Q ss_pred EEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
+++.|+. |++||+.++. ++..+........++++.|+|++.+|++++.|+.+++||+..+..+.
T Consensus 305 s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~------------- 370 (456)
T KOG0266|consen 305 SASYDGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG------------- 370 (456)
T ss_pred EcCCCcc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee-------------
Confidence 9999999 9999999999 56777654322269999999999999999999999999999887543
Q ss_pred CCCceeEeecccceeecceeeEEEEecCC---CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEG---SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN 423 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 423 (432)
...+|.. .+.....++.+.++++|+.|+.|++|++.. ++.+.+++.+
T Consensus 371 ----------------------~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s--~~~~~~l~~h 420 (456)
T KOG0266|consen 371 ----------------------TYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS--GGILQRLEGH 420 (456)
T ss_pred ----------------------eecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCc--cchhhhhcCC
Confidence 2334443 233445577999999999999999998854 4555555554
No 45
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=1.3e-28 Score=202.75 Aligned_cols=277 Identities=15% Similarity=0.217 Sum_probs=213.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEee--eCCeEEEecCCCCCCCCCCeEEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
-...|+++.|+++|.+|++++ |+.++|||...++.. +.+. .+...+-.+.| .++.....+...| .+|+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~--~ti~-skkyG~~~~~Fth~~~~~i~sStk~d-----~tIry 84 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQV--KTIN-SKKYGVDLACFTHHSNTVIHSSTKED-----DTIRY 84 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCcee--eEee-cccccccEEEEecCCceEEEccCCCC-----CceEE
Confidence 567899999999999998877 667999999888776 4443 34334444444 4444444444456 89999
Q ss_pred EeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
.++.+.+.++.+. |...|.+++.+|-+..+++ |++|++||++..++...+..... .+++|+|.|-.+++++
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~--- 159 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALAN--- 159 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEec---
Confidence 9999999999999 9999999999997766663 99999999998877766654333 4688999875444332
Q ss_pred CCCcEEEEEccC---Cceeeee---ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC-ceEEE
Q 014007 237 QKGQVRVEHYAS---KRTKFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA-EIYSL 309 (432)
Q Consensus 237 ~d~~i~i~d~~~---~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~-~i~~~ 309 (432)
....|++||++. ++...+. +.....+.|.|+|||++|+.+...+. +++.|.-+|..+..+....... --.+.
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 344999999987 4444443 34677899999999999999999999 9999999999999988754333 23578
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEE
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAF 388 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 388 (432)
+|+||++++++|+.||+|++|+++++.. +..+++ +.+.+.++.|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~-----------------------------------v~~~~~~~~~~~~~~~f 283 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKK-----------------------------------VAVLRGPNGGPVSCVRF 283 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcE-----------------------------------eeEecCCCCCCcccccc
Confidence 8999999999999999999999998873 334555 4678999999
Q ss_pred ccCCCEEEEEecCCeEEEEEecC
Q 014007 389 GHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 389 s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+|.-..++ +.+..+.+|-.+.
T Consensus 284 nP~~~mf~--sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 284 NPRYAMFV--SASSNLVFWLPDE 304 (311)
T ss_pred CCceeeee--ecCceEEEEeccc
Confidence 99755555 4455677776543
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=2.4e-30 Score=216.31 Aligned_cols=244 Identities=17% Similarity=0.231 Sum_probs=206.1
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.-.+.+|.+.|+|+.||.||.+||+|. ++.|+||+..++.... .+. .....+.-+.|+|....++.|+.| |
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~--~~~-~e~~dieWl~WHp~a~illAG~~D-----G 170 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQW--KLD-QEVEDIEWLKWHPRAHILLAGSTD-----G 170 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEE--Eee-cccCceEEEEecccccEEEeecCC-----C
Confidence 356789999999999999999999999 6669999998887663 332 356678889999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-----------------
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN----------------- 215 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~----------------- 215 (432)
.|.+|.+.++...+.+. |..++++-.|.|+|+.++. ||+|++||+.++++++.+....+
T Consensus 171 svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 171 SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 99999999987777787 9999999999999998883 99999999999988777651110
Q ss_pred ----------------------------------CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007 216 ----------------------------------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (432)
Q Consensus 216 ----------------------------------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i 261 (432)
.+.++.+.|....+-+++.|+.||+|.|||+....++..-.|+..|
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V 330 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV 330 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence 0011122222233334455779999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 262 ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
..+.|-+ ..+|++++.+|. |+.||.++|+++.++.+ |...|.+++++|+++++++++.|++.+||++.
T Consensus 331 ~~l~w~~-t~~l~t~c~~g~-v~~wDaRtG~l~~~y~G--H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 331 TKLKWLN-TDYLLTACANGK-VRQWDARTGQLKFTYTG--HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEEcC-cchheeeccCce-EEeeeccccceEEEEec--CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999998 789999999999 99999999999999996 66899999999999999999999999999875
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.6e-30 Score=239.73 Aligned_cols=279 Identities=16% Similarity=0.239 Sum_probs=236.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
..+..|..++|+|...++.++-- +.|++||..-+.++ ..|. .|.++|..++|++...++++|++| .+|++|
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli--~rFd-eHdGpVRgv~FH~~qplFVSGGDD-----ykIkVW 78 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLI--DRFD-EHDGPVRGVDFHPTQPLFVSGGDD-----YKIKVW 78 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHH--hhhh-ccCCccceeeecCCCCeEEecCCc-----cEEEEE
Confidence 34678899999999999999884 44999998755544 5565 799999999999999999999999 999999
Q ss_pred eCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC
Q 014007 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
+.++.+++.++. |-..|..+.|++.--++++ |.+|+||+..+++++..+.+|.+-|.+..|+|..+.+ + +++-
T Consensus 79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI--V-SaSL 155 (1202)
T KOG0292|consen 79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI--V-SASL 155 (1202)
T ss_pred ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE--E-Eecc
Confidence 999999999988 9999999999999988884 7799999999999999999999999999999977643 3 3558
Q ss_pred CCcEEEEEccCCc------------------------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 238 KGQVRVEHYASKR------------------------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 238 d~~i~i~d~~~~~------------------------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
|.+|++||+..-+ ...+.+|...|+.++|+|.-.++++|+.|+. |++|.
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlWr 234 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLWR 234 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEEE
Confidence 9999999987510 1345789999999999999999999999999 99999
Q ss_pred CCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007 288 TLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (432)
Q Consensus 288 ~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (432)
+...+.- .+.. +|...|.++-|+|...++++.++|++|+|||+...+.
T Consensus 235 mnetKaWEvDtcr--gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~---------------------------- 284 (1202)
T KOG0292|consen 235 MNETKAWEVDTCR--GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS---------------------------- 284 (1202)
T ss_pred eccccceeehhhh--cccCCcceEEecCccceeEecCCCccEEEEecccccc----------------------------
Confidence 8765543 2334 3778999999999999999999999999999988764
Q ss_pred eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.+++..++..+.++-+|..++++ ++.|+-+.+|.++.
T Consensus 285 -------v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 285 -------VQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLER 322 (1202)
T ss_pred -------eeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcc
Confidence 335555667788999999888776 55566777888864
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=8.7e-30 Score=220.66 Aligned_cols=275 Identities=16% Similarity=0.196 Sum_probs=226.9
Q ss_pred CCCCeEEEEEcCCCCE-EEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 84 PPPTLLHISFNQDHGC-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~-l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
..+.|.+++|+|...+ +|+++.-.+.||+..+.... +.+. .-...+.++.|..||..++.|+.. |.|++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~--k~~s-rFk~~v~s~~fR~DG~LlaaGD~s-----G~V~vfD 96 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVR--KTFS-RFKDVVYSVDFRSDGRLLAAGDES-----GHVKVFD 96 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhh--hhHH-hhccceeEEEeecCCeEEEccCCc-----CcEEEec
Confidence 3578999999997654 88888888999997655433 4343 456788999999999999999998 9999999
Q ss_pred CCCCceeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC
Q 014007 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
..+...++.+. |..++..+.|+|++..++ + |+.+++||+.+......+.+|.+-|++.+++|..+++++ +|+.
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv--tGsY 174 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV--TGSY 174 (487)
T ss_pred cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE--ecCC
Confidence 77766777787 999999999999766555 2 668999999998876688999999999999999887654 5779
Q ss_pred CCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007 238 KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 238 d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
||.|++||++.. ....-..|..+|..+.+-|.|..+++++.+. |+|||+-+|..+-.... .|...|+|+++..++.
T Consensus 175 Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~--vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 175 DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNS--VKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDST 251 (487)
T ss_pred CceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCe--EEEEEecCCceehhhhh-cccceEEEEEeecCCc
Confidence 999999999986 4444557999999999999999999988764 99999986654433332 2668999999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 396 (432)
.|++++-|+.|++||+.+.+.+ ..++. .++|.+++.+||++.++
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv-----------------------------------~s~~~-~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVV-----------------------------------HSWKY-PGPVLSIAVSPDDQTVV 295 (487)
T ss_pred eEeecccccceEEEEccceEEE-----------------------------------Eeeec-ccceeeEEecCCCceEE
Confidence 9999999999999998876621 12222 35799999999999999
Q ss_pred EEecCCeEEEE
Q 014007 397 ILGMDGSFYRC 407 (432)
Q Consensus 397 ~~~~dg~v~iw 407 (432)
.|-.||.+.+=
T Consensus 296 iGmsnGlv~~r 306 (487)
T KOG0310|consen 296 IGMSNGLVSIR 306 (487)
T ss_pred Eecccceeeee
Confidence 99999998874
No 49
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9.5e-31 Score=208.44 Aligned_cols=274 Identities=17% Similarity=0.188 Sum_probs=215.9
Q ss_pred EEEEEcC--CCCEE-EEEc------CCcEEEEEcC-CCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCe
Q 014007 89 LHISFNQ--DHGCF-AAGT------DHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNK 157 (432)
Q Consensus 89 ~~~~~s~--~~~~l-~~~~------~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~ 157 (432)
+++.||| ++++. |++. .+.+.|.+++ .........+. -...+.+++|+++. ..++++..| |.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GD-----GS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAASGD-----GS 84 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEecC-----ce
Confidence 5679998 34432 2321 2338888885 33333334553 67788999998753 445555556 99
Q ss_pred EEEEeCCC-CceeEEee-cCCceEEEEEecCccEEE--e--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 158 VMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 158 v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+++||+.. ..++..++ |...|.++.|++..+... + |++|++|+....+.++++.+|...|....|+|....++.
T Consensus 85 Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence 99999643 35778887 999999999998544333 2 999999999999999999999999999999999888765
Q ss_pred EeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEE
Q 014007 232 VCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYS 308 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~ 308 (432)
.+ +.|+.+++||++. ++...+..|...|.|+.|+. +.+.|+||+.|+. ||+||++..+ ++.++.+ |.-.|..
T Consensus 165 s~--Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~AVRk 239 (311)
T KOG0277|consen 165 SA--SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLAVRK 239 (311)
T ss_pred Ec--cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceEEEE
Confidence 44 4699999999988 55566899999999999998 6678999999999 9999999754 5666654 6789999
Q ss_pred EEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 309 LAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 309 ~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
+.|||.. ..||+++.|-+++|||...+... +.+...|.+-|..+.
T Consensus 240 vk~Sph~~~lLaSasYDmT~riw~~~~~ds~----------------------------------~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 240 VKFSPHHASLLASASYDMTVRIWDPERQDSA----------------------------------IETVDHHTEFVCGLD 285 (311)
T ss_pred EecCcchhhHhhhccccceEEecccccchhh----------------------------------hhhhhccceEEeccc
Confidence 9999964 57899999999999999876532 223456777888999
Q ss_pred Ecc-CCCEEEEEecCCeEEEEE
Q 014007 388 FGH-QKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 388 ~s~-~~~~l~~~~~dg~v~iw~ 408 (432)
||+ ++.++|+++.|+.++||+
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccccCceeeecccccceeeec
Confidence 998 788999999999999997
No 50
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.1e-31 Score=217.12 Aligned_cols=284 Identities=14% Similarity=0.216 Sum_probs=238.7
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecc-----cCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
+.-+....+.|..|+|||++|++|+-+| |.+||..+++......++ --+...|.++.|+.+...+++|+.|
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD--- 284 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD--- 284 (508)
T ss_pred eecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC---
Confidence 3344566788999999999999999555 999999877654211111 1366789999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 154 PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
|.|++|.+.+|.+++.+. |...|+++.|+.|+..+.+ |.++++.-++.|++++++++|..-++...|.++|.+
T Consensus 285 --GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 285 --GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred --CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence 999999999999999998 9999999999999887773 889999999999999999999999999999999997
Q ss_pred EEEEeecCCCCcEEEEEccCC-ceeeee--ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-c
Q 014007 229 LVLVCPGLQKGQVRVEHYASK-RTKFIM--AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-R 303 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~-~~~~~~--~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-~ 303 (432)
++-+ +.||+|++|+..+. ++.++. +.+.+|.++-.-| +...++++...++ |+|-++ .|+.++.+..+.. .
T Consensus 363 iisa---SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~-qGQvVrsfsSGkREg 437 (508)
T KOG0275|consen 363 IISA---SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNM-QGQVVRSFSSGKREG 437 (508)
T ss_pred EEEe---cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCe-EEEEec-cceEEeeeccCCccC
Confidence 7544 37999999999884 344444 4566788888777 5578889999999 999986 7888888875432 2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 383 (432)
+...+.+.||.|.++.+.++|+.++.|.+.+++.. .++..|+..|
T Consensus 438 GdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE-----------------------------------~tl~VhEkdv 482 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE-----------------------------------RTLPVHEKDV 482 (508)
T ss_pred CceEEEEecCCCcEEEEEccCcEEEEEEeecCcee-----------------------------------eeeecccccc
Confidence 45677889999999999999999999999998732 2466788888
Q ss_pred eEEEEccCCCEEEEEecCCeEEEEE
Q 014007 384 YIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
-.++-+|..+.||+-++||.+++|.
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccchhhhhcccchhhhcC
Confidence 8999999999999999999999985
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-30 Score=203.11 Aligned_cols=235 Identities=16% Similarity=0.183 Sum_probs=204.6
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
.+...|..+.|+-+|++.++++.| .+|++|+...|.+++++. |...|..++.+.|...+++ |..+.+||+.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 688899999999999999999999 999999999999999999 9999999999999888885 7899999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
+|+.++.+.+|...++.+.|+.+.. +++ +|+.|..+++||-++ .+++.+......|.++.. .+..+++|+.|
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesS--Vv~-SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v--~~heIvaGS~D 164 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESS--VVA-SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV--AEHEIVAGSVD 164 (307)
T ss_pred cCeeeeecccccceeeEEEecCcce--EEE-eccccceeEEEEcccCCCCccchhhhhcCceeEEEe--cccEEEeeccC
Confidence 9999999999999999999988765 334 577999999999998 456667777888999988 46689999999
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (432)
|+ +|.||++.|+...-+.+ .+|++++|++|++..+.++.|+++++.|-.+++.++.
T Consensus 165 Gt-vRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s------------------- 220 (307)
T KOG0316|consen 165 GT-VRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS------------------- 220 (307)
T ss_pred Cc-EEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHH-------------------
Confidence 99 99999999988766653 5799999999999999999999999999999986543
Q ss_pred eecccceeecceeeEEEEecCCC--ceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 360 KGVLPKYFSSEWSVAQFRLVEGS--PYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.++|.+. -..++++....++++|++||.|++|++-.
T Consensus 221 ----------------YkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 221 ----------------YKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred ----------------hcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 3444432 23466777788999999999999999844
No 52
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.1e-31 Score=224.16 Aligned_cols=283 Identities=14% Similarity=0.166 Sum_probs=233.8
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
...+..|.+.|..+.|-++...|++|+ |..|++|++...+......+. +....+..+.|.+++..+++.+.| +
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d-----~ 241 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASND-----K 241 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCC-----C
Confidence 467889999999999999988888887 666999999887766667776 778899999999999999999998 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.+++|++...+...++. |.+.|+++.|......++ .|.+|++||+....+.+++-... .+..++..+ ...
T Consensus 242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S-~cnDI~~~~-----~~~ 315 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS-QCNDIVCSI-----SDV 315 (459)
T ss_pred ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-cccceEecc-----eee
Confidence 99999999999999999 999999999988766555 38899999999988877764322 233444442 223
Q ss_pred eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC--cCceEEEE
Q 014007 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLA 310 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~~~ 310 (432)
.+|-.|+.|++||.++........-.+.|+++..+++|..|.+++.|.+ +.+.|+++.+....+..... ....+.+.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred eecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeE
Confidence 3577899999999998665554445569999999999999999999999 99999999998888875321 23588999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC--CCceEEEE
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAF 388 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~ 388 (432)
|||++.|+++|+.||.|+||++.+++..+. ++... ..|++++|
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~-----------------------------------l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKV-----------------------------------LSLSTSNAAITSLSW 439 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEE-----------------------------------eccCCCCcceEEEEE
Confidence 999999999999999999999999984321 22222 25999999
Q ss_pred ccCCCEEEEEecCCeEEEEE
Q 014007 389 GHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 389 s~~~~~l~~~~~dg~v~iw~ 408 (432)
+|.|..|++++.++.+.+|.
T Consensus 440 ~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cCCCchhhcccCCcceEecC
Confidence 99999999999999999983
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=216.44 Aligned_cols=241 Identities=14% Similarity=0.178 Sum_probs=214.7
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
+.+. +|...|.++++.|...+|++|+.| ++|+|||+.+|+...++. |...|..+++++-..|+++ |+.|+
T Consensus 145 rVi~-gHlgWVr~vavdP~n~wf~tgs~D-----rtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 145 RVIS-GHLGWVRSVAVDPGNEWFATGSAD-----RTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhhh-hccceEEEEeeCCCceeEEecCCC-----ceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 3444 899999999999999999999999 999999999999999999 9999999999999988884 88999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATS 276 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (432)
.||++..+.++.+.+|-..|.++++.|.-+. +++ |+.|..+++||+++ ..+..+.+|..+|..+.+.|-...+++|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldv--l~t-~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDV--LVT-GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred EEechhhhhHHHhccccceeEEEecccccee--EEe-cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 9999999999999999999999999997663 343 55899999999999 4677889999999999999977789999
Q ss_pred cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 277 ~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
+.|++ |++||++.|+...++.. |+..+.+++.+|....+|+++.|+ |+-|++..+..
T Consensus 296 S~D~t-vrlWDl~agkt~~tlt~--hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f------------------- 352 (460)
T KOG0285|consen 296 SHDST-VRLWDLRAGKTMITLTH--HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF------------------- 352 (460)
T ss_pred cCCce-EEEeeeccCceeEeeec--ccceeeEEecCCchhhhhccCCcc-ceeccCCccch-------------------
Confidence 99999 99999999999888874 678999999999999999998775 89999998873
Q ss_pred eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|...|++++...| ..+++|+..|.+..|++..
T Consensus 353 ----------------~~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwks 390 (460)
T KOG0285|consen 353 ----------------LQNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKS 390 (460)
T ss_pred ----------------hhccccccceeeeeeeccC-ceEEEcCCceEEEEEecCc
Confidence 2346788899999998877 4677899999999999855
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.8e-30 Score=236.02 Aligned_cols=286 Identities=14% Similarity=0.195 Sum_probs=211.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe----------------
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI---------------- 141 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------- 141 (432)
.....|.++|.++.||+||+|||+|+.++ |+||.+-..+.. .... .......+....++
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~-~~~~---~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERM-RVAE---GDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchh-cccc---cccchhhhhhhhccccCccccccccccccc
Confidence 34448999999999999999999999666 999998542221 0111 00000000001000
Q ss_pred EEEecCCCCCCCCCCeEEEEeCC----CCceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeecc
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDH----QSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIA 214 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~----~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~ 214 (432)
...-.+... ..+ +.+.. ..++++.+. |.+.|.+|.|+.++.+|.+ |.+|++|++...+++..| .|.
T Consensus 337 s~~~~~~~s-----~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F-~Hn 409 (712)
T KOG0283|consen 337 SSSRKGSQS-----PCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF-SHN 409 (712)
T ss_pred cccccccCC-----ccc-cCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE-ecC
Confidence 111111111 122 22211 235677777 9999999999999988884 999999999999999998 489
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~ 294 (432)
+-|++++|+|..+..++ +|+-||.|+||++...++.....-..-|++++|.|||++.++|+.+|. +++|+....+..
T Consensus 410 dfVTcVaFnPvDDryFi--SGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFI--SGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-CRFYDTEGLKLV 486 (712)
T ss_pred CeeEEEEecccCCCcEe--ecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-EEEEEccCCeEE
Confidence 99999999998887655 578999999999999988888777799999999999999999999999 999999988877
Q ss_pred EEEEeCCC------cCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007 295 QEVRRGAD------RAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (432)
Q Consensus 295 ~~~~~~~~------~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (432)
..+....+ ...|+.+.|.|.. ..+++.+.|..|+|||.++...+..
T Consensus 487 ~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K--------------------------- 539 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK--------------------------- 539 (712)
T ss_pred EeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh---------------------------
Confidence 66554322 1379999999743 3577888999999999977664322
Q ss_pred ecceeeEEEEecC--CCceEEEEccCCCEEEEEecCCeEEEEEecCCC
Q 014007 368 SSEWSVAQFRLVE--GSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVN 413 (432)
Q Consensus 368 ~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 413 (432)
++++. +.=....|+.||++|+++++|..||||+++...
T Consensus 540 --------fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 540 --------FKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred --------hcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 33322 122356899999999999999999999986644
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=230.89 Aligned_cols=239 Identities=13% Similarity=0.160 Sum_probs=216.1
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
.+...|-++.++|....++++-.+ |.|.|||.++...++.+. ...+|++..|-....+++. |..|++|+..
T Consensus 11 ~rSdRVKsVd~HPtePw~la~Lyn-----G~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYN-----GDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeec-----CeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 477889999999999999998888 999999999999999999 7889999999988777773 7799999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCC
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTK 279 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d 279 (432)
+++.++.+..|.+-+++++++|....++ +++.|-.|++||.+. ...+++.+|...|.+++|.| |.+.+|+++.|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vL---tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVL---TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEE---ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 9999999999999999999999877543 345899999999998 56788999999999999999 67899999999
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS 357 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
++ |+||.+.+..+..++.+ |...|+++.|-+.| .+|++|++|.+|+|||.++..+
T Consensus 163 rT-VKVWslgs~~~nfTl~g--HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-------------------- 219 (794)
T KOG0276|consen 163 RT-VKVWSLGSPHPNFTLEG--HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-------------------- 219 (794)
T ss_pred cc-EEEEEcCCCCCceeeec--cccCcceEEeccCCCcceEEecCCCceEEEeecchHHH--------------------
Confidence 99 99999999999999995 77999999998744 6999999999999999999875
Q ss_pred eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.++.+|...|+.+.|+|.=..+++|++||+|+||+-..
T Consensus 220 ---------------V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 220 ---------------VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred ---------------HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 446789999999999999999999999999999998544
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=9e-29 Score=199.02 Aligned_cols=236 Identities=18% Similarity=0.240 Sum_probs=201.1
Q ss_pred eecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCC---ceeEEee--cCCceEEEEEecCccEEEe---
Q 014007 122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS--FRSEVRSVKLRRDRIIVVL--- 192 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~--~~~~v~~~~~~~~~~~~~~--- 192 (432)
+.++ +|...+..++|+|. |..|++++.| +.|++|+...+ .+...+. |+..|++++|+|.|+++++
T Consensus 8 ~~~~-gh~~r~W~~awhp~~g~ilAscg~D-----k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 8 QKLS-GHKDRVWSVAWHPGKGVILASCGTD-----KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred Eeec-CCCCcEEEEEeccCCceEEEeecCC-----ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 4554 78889999999998 8999999999 99999998743 4555554 8999999999999999993
Q ss_pred CCeEEEEEcCC--CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC----CceeeeeccCCceeEEEE
Q 014007 193 EQKIFVYNFAD--LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFAL 266 (432)
Q Consensus 193 d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~ 266 (432)
|.++.||.-.. .+++..+++|.+.|.+++|+.+|+.+ |++ +.|..|-||.+.. .....++.|...|..+.|
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~L--ATC-SRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYL--ATC-SRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEE--EEe-eCCCeEEEEEecCCCcEEEEeeeccccccccEEEE
Confidence 99999998554 47889999999999999999999855 433 3899999999985 345678899999999999
Q ss_pred cCCCCEEEEEcCCCceEEEEECC---CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007 267 TQDGQLLATSSTKGTLVRIFNTL---DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (432)
Q Consensus 267 sp~~~~l~~~~~dg~~i~vwd~~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 343 (432)
+|...+|++++.|.+ |++|+-. +..+++++.+ |...|.+++|++.|..|+++++|++++||...+.-
T Consensus 159 HPt~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~------- 228 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL------- 228 (312)
T ss_pred cCCcceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCceEEEecCCcceEeeeeccCc-------
Confidence 999999999999999 9999866 3478888886 55799999999999999999999999999876432
Q ss_pred CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
-..|...+..++|. ...|++++.|+.|++|.-.
T Consensus 229 --------------------------------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 229 --------------------------------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred --------------------------------chhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence 12356678899997 5789999999999999865
No 57
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-30 Score=238.25 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=223.3
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
.....+-.++|+|....++++-.. |.|++||.+-+.++..|. |.++|.+++|+|++.++++ |-.|++|+..
T Consensus 7 skSsRvKglsFHP~rPwILtslHs-----G~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHS-----GVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cccccccceecCCCCCEEEEeecC-----ceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 456788899999999999998887 999999999999999998 9999999999999999986 4589999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGT 281 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 281 (432)
+.+++.++.+|.+-|+.+.|++.-..++- .+.|.+|+||+..+ +.+..+.+|...|.|.+|+|....++++|.|.+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlS---ASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILS---ASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEE---ccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 99999999999999999999998776543 34899999999998 567789999999999999999999999999999
Q ss_pred eEEEEECCCC---------------------------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 282 LVRIFNTLDG---------------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 282 ~i~vwd~~~~---------------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
|||||+... ..+.++-..+|...|+-++|+|.-.+|++|++|+.|++|.+..
T Consensus 159 -VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 159 -VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred -EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 999998521 1111222224778999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007 335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
.+ .|++-+.++|.+.|+++-|+|..+++++.|+|++|++|+++..++
T Consensus 238 tK---------------------------------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 238 TK---------------------------------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred cc---------------------------------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence 54 577888999999999999999999999999999999999988887
Q ss_pred CcceEeeecc
Q 014007 415 GEMTQLEYNN 424 (432)
Q Consensus 415 ~~~~~~~~~~ 424 (432)
-++.+-+..+
T Consensus 285 v~tfrrendR 294 (1202)
T KOG0292|consen 285 VQTFRRENDR 294 (1202)
T ss_pred eeeeeccCCe
Confidence 7776555444
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.9e-29 Score=210.05 Aligned_cols=285 Identities=13% Similarity=0.178 Sum_probs=226.3
Q ss_pred CCCCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC---eEEEecCCC
Q 014007 74 PSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGP 149 (432)
Q Consensus 74 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~ 149 (432)
.++.+.....|.+.|.++... ++.+.+|+ |+.++||+... +.. +.+. +|...+.++++... ...+++++.
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G-k~~--~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG-KSI--KTIV-GHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred CCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCC-ceE--EEEe-cCCcceeeeEEEecCCccceEEEecC
Confidence 344455667799999999988 66777777 77799999754 333 4444 78888888776433 335899999
Q ss_pred CCCCCCCeEEEEeCCCCcee----EEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC------------------
Q 014007 150 DPQYPLNKVMIWDDHQSRCI----GELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD------------------ 203 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~------------------ 203 (432)
| .++++|-++.++.+ .... |...|.+++..+++..+++ |.+|.||+..+
T Consensus 168 D-----qtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 168 D-----QTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred C-----ceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhh
Confidence 9 99999998877533 2222 8999999999999999884 99999999321
Q ss_pred -------CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007 204 -------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS 276 (432)
Q Consensus 204 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (432)
+.++..+.+|..+|..+.|++.+ . +++++.|.+|+.||+.++....-......+.|+..+|..++|++|
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~-v---~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~g 318 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSDAT-V---IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASG 318 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcCCC-c---eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeec
Confidence 12456778899999999999843 2 334569999999999997766655667889999999999999999
Q ss_pred cCCCceEEEEECCCCc---eEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 277 STKGTLVRIFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 277 ~~dg~~i~vwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
+.|.. |++||.+++. ..+.|.+ |...|.++.|+|... .|++++.||++++||+++.+..
T Consensus 319 ssdr~-irl~DPR~~~gs~v~~s~~g--H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p-------------- 381 (423)
T KOG0313|consen 319 SSDRH-IRLWDPRTGDGSVVSQSLIG--HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP-------------- 381 (423)
T ss_pred CCCCc-eeecCCCCCCCceeEEeeec--chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc--------------
Confidence 99999 9999998763 2344543 778999999999655 6788999999999999987621
Q ss_pred CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|.+.|.++.|+ ++..|++||.|.+++|+.-.+
T Consensus 382 --------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 382 --------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred --------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 56788899999999997 567999999999999987543
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=223.81 Aligned_cols=283 Identities=20% Similarity=0.221 Sum_probs=225.9
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
..-...+|..+|+++.|...|.+|++|+.++ |.+||+-..... ..+. +|...|+.+.|..+..++++.+.|
T Consensus 99 ~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl--~rL~-GHkd~iT~~~F~~~~~~lvS~sKD----- 170 (888)
T KOG0306|consen 99 ILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL--FRLR-GHKDSITQALFLNGDSFLVSVSKD----- 170 (888)
T ss_pred eeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee--EEee-cchHHHhHHhccCCCeEEEEeccC-----
Confidence 3456788999999999999999999999555 999998655544 4455 789999999998888888888888
Q ss_pred CeEEEEeCCCCceeEEee--------------------------------------------------------------
Q 014007 156 NKVMIWDDHQSRCIGELS-------------------------------------------------------------- 173 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-------------------------------------------------------------- 173 (432)
+.|++||+++..+..+.-
T Consensus 171 s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l 250 (888)
T KOG0306|consen 171 SMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINL 250 (888)
T ss_pred ceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEE
Confidence 888888886654433111
Q ss_pred --------------------------------------------------------------------------------
Q 014007 174 -------------------------------------------------------------------------------- 173 (432)
Q Consensus 174 -------------------------------------------------------------------------------- 173 (432)
T Consensus 251 ~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~ 330 (888)
T KOG0306|consen 251 VTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTP 330 (888)
T ss_pred eecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEe
Confidence
Q ss_pred -----------------------------------------cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEE
Q 014007 174 -----------------------------------------FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQI 210 (432)
Q Consensus 174 -----------------------------------------~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~ 210 (432)
|...|.+++++.+...+++ ++.|++|+..+.++++++
T Consensus 331 ~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi 410 (888)
T KOG0306|consen 331 SGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI 410 (888)
T ss_pred cCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe
Confidence 3444666666666666664 578888888888888887
Q ss_pred eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
... -+-+..|.|.++++++ |...|.+.+||+.+. .+.++.+|++.|.+++.+||++.+++|+.|.+ |++||..
T Consensus 411 ~~~--y~l~~~Fvpgd~~Iv~---G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDkt-VkfWdf~ 484 (888)
T KOG0306|consen 411 TCG--YILASKFVPGDRYIVL---GTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKT-VKFWDFK 484 (888)
T ss_pred ccc--cEEEEEecCCCceEEE---eccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcE-EEEEeEE
Confidence 543 5556778887776554 448899999999884 45567799999999999999999999999999 9999974
Q ss_pred C-----CceE--------EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 290 D-----GTLL--------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 290 ~-----~~~~--------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
- +... +++. -+..|.++.+||||++||++=-|++|+||-+++.+-
T Consensus 485 l~~~~~gt~~k~lsl~~~rtLe---l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF------------------- 542 (888)
T KOG0306|consen 485 LVVSVPGTQKKVLSLKHTRTLE---LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF------------------- 542 (888)
T ss_pred EEeccCcccceeeeeccceEEe---ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-------------------
Confidence 1 1111 2222 346899999999999999999999999999999771
Q ss_pred eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+-++-+|.=+|.++..|||++.+++|+.|.+|+||-+|.
T Consensus 543 ----------------flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 543 ----------------FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred ----------------eeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence 346789999999999999999999999999999999977
No 60
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.6e-29 Score=222.54 Aligned_cols=274 Identities=15% Similarity=0.129 Sum_probs=228.9
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 89 ~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
+-+.|+ ....||+|....|.+|+..++.......+ +...|+++.|+++|.+|+.|..+ |.|.|||..+.+.
T Consensus 181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQKK 251 (484)
T ss_pred hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEEEEeecC-----CeEEEEehhhccc
Confidence 446777 45689999988999999887775433333 37899999999999999999999 9999999999888
Q ss_pred eEEee--cCCceEEEEEecCccEEEe-CCeEEEEEcCCCeeeEE-EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007 169 IGELS--FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (432)
Q Consensus 169 ~~~~~--~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 244 (432)
+..+. |...|.+++|+........ ++.|..+|++..+.... +.+|...|..+.|++++.. +++ |+.|+.+.||
T Consensus 252 ~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--lAS-GgnDN~~~Iw 328 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--LAS-GGNDNVVFIW 328 (484)
T ss_pred cccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe--ecc-CCCccceEec
Confidence 88877 7899999999833222222 89999999998765544 7889999999999999884 454 6699999999
Q ss_pred EccC-CceeeeeccCCceeEEEEcC-CCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007 245 HYAS-KRTKFIMAHDSRIACFALTQ-DGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 245 d~~~-~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 320 (432)
|... .....+..|...|.+++|+| ...+||+|+ .|+. |++||..+++.+..+.. ...|.+|.|++..+-|++
T Consensus 329 d~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 329 DGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLS 404 (484)
T ss_pred cCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEE
Confidence 9965 56678889999999999999 567888865 5888 99999999999999884 478999999999876665
Q ss_pred E--eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007 321 S--SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL 398 (432)
Q Consensus 321 ~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 398 (432)
+ ..++.|.||+..+.+. ++.+.+|...|..++++|||..+++|
T Consensus 405 thG~s~n~i~lw~~ps~~~-----------------------------------~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMKL-----------------------------------VAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred ecCCCCCcEEEEeccccce-----------------------------------eeeecCCcceeEEEEECCCCCEEEEe
Confidence 4 3678999999988663 45688999999999999999999999
Q ss_pred ecCCeEEEEEecCCC
Q 014007 399 GMDGSFYRCQFDPVN 413 (432)
Q Consensus 399 ~~dg~v~iw~~~~~~ 413 (432)
+.|.++++|++-...
T Consensus 450 a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 450 AADETLRFWNLFDER 464 (484)
T ss_pred cccCcEEeccccCCC
Confidence 999999999986643
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=7e-31 Score=218.16 Aligned_cols=227 Identities=15% Similarity=0.281 Sum_probs=193.5
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCC
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFAD 203 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~ 203 (432)
....|.++.+.. ..+++|..| ++|+|||..+..+++.+. |.+.|.|+.|... +++ +|.+|++||.++
T Consensus 196 ~skgVYClQYDD--~kiVSGlrD-----nTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYDD--EKIVSGLRD-----NTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEecc--hhhhccccc-----CceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEeccC
Confidence 445667776654 478899999 999999999999998888 9999999998544 555 489999999999
Q ss_pred CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
++++.++-.|...+-.+.|+.. ++++ .+.|..+.+||+.... .+.+.+|...|+.+.| +.+++++++.|
T Consensus 267 ge~l~tlihHceaVLhlrf~ng----~mvt-cSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgD 339 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFSNG----YMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGD 339 (499)
T ss_pred CchhhHHhhhcceeEEEEEeCC----EEEE-ecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCC
Confidence 9999999889888888887754 3443 3589999999998843 3457799999999999 55699999999
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (432)
.+ |++|++.++++++++.+ |...|.++.+ .|+++++|+.|++|++||+..+.++
T Consensus 340 RT-ikvW~~st~efvRtl~g--HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL--------------------- 393 (499)
T KOG0281|consen 340 RT-IKVWSTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL--------------------- 393 (499)
T ss_pred ce-EEEEeccceeeehhhhc--ccccceehhc--cCeEEEecCCCceEEEEeccccHHH---------------------
Confidence 99 99999999999999986 6688988887 7899999999999999999999853
Q ss_pred eecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
..+.+|++-|.++.| |.+.+++|+.||+|++|++...
T Consensus 394 --------------RvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 394 --------------RVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred --------------HHHhchHHhhhheee--cCceeeeccccceEEEEecccc
Confidence 357789999999999 6789999999999999999663
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6.9e-30 Score=220.94 Aligned_cols=247 Identities=17% Similarity=0.241 Sum_probs=208.5
Q ss_pred eecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEEe---CCe
Q 014007 122 RDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQK 195 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~ 195 (432)
..+. +|...|.++.|.| .+.++++++.| +.|+||++.. +++++++. |..+|.+++|+++|..+.+ |+.
T Consensus 208 ~~~~-gH~kgvsai~~fp~~~hLlLS~gmD-----~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 208 HNLS-GHTKGVSAIQWFPKKGHLLLSGGMD-----GLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred eecc-CCccccchhhhccceeeEEEecCCC-----ceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 4454 8999999999998 78899999999 9999999877 88999999 9999999999999987773 999
Q ss_pred EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEE
Q 014007 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~ 274 (432)
|++||+++|+++..+.. .....++.|.|++.+++++ |+.|+.|+.||++++.+ +.+..|-+.|..+.|-++|++++
T Consensus 282 lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~--G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFi 358 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLV--GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFI 358 (503)
T ss_pred eeeeccccceEEEEEec-CCCceeeecCCCCCcEEEE--ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEe
Confidence 99999999999999864 4566799999999777664 56899999999999654 56778999999999999999999
Q ss_pred EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
+.+.|++ ++||+.+..-.+..+... +.-...++..+|++.++++-+.|+.|.+|.+...-.+..
T Consensus 359 ssSDdks-~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk-------------- 422 (503)
T KOG0282|consen 359 SSSDDKS-VRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK-------------- 422 (503)
T ss_pred eeccCcc-EEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccccCH--------------
Confidence 9999999 999999888766544432 334678899999999999999999999999765432110
Q ss_pred CceeEeecccceeecceeeEEEEecC--CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 355 SLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
-..+++|. |.-..+.|||||.+|++|+.||.+++|++.+
T Consensus 423 ------------------kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 423 ------------------KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT 463 (503)
T ss_pred ------------------hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh
Confidence 11345554 5567899999999999999999999999977
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=217.11 Aligned_cols=284 Identities=10% Similarity=0.095 Sum_probs=229.1
Q ss_pred ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..+.+|.++|.|++=+|.. ..+++|+ |+.|+|||+....+. ..+. .|.+.|..+++.. ..+++++.| .
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--~~f~-AH~G~V~Gi~v~~--~~~~tvgdD-----K 129 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--RTFK-AHEGLVRGICVTQ--TSFFTVGDD-----K 129 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--heee-cccCceeeEEecc--cceEEecCC-----c
Confidence 3458999999999999987 6788888 666999999877665 5665 7899999999887 667777777 9
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
+|+.|-+.- ..+.++-..+.+.++.-+..+..+++ ...|.|||.....+++.+.-..+.+.++.|+|....+ |++++
T Consensus 130 tvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsI-Las~~ 207 (433)
T KOG0268|consen 130 TVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSI-LASCA 207 (433)
T ss_pred ceeeeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchh-eeeec
Confidence 999999654 57777777888888888777777776 4589999999889999998888889999999987665 45444
Q ss_pred CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCC
Q 014007 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
.|+.|.+||++......-......-+.|+|+|++-.+++|++|.. ++.||++.. +.+..+.+ |.+.|.++.|||.
T Consensus 208 -sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~n-lY~~DmR~l~~p~~v~~d--hvsAV~dVdfspt 283 (433)
T KOG0268|consen 208 -SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHN-LYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT 283 (433)
T ss_pred -cCCceEEEecccCCccceeeeeccccceecCccccceeecccccc-ceehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence 899999999998554333333455678999998888999999999 999999875 44555654 6689999999999
Q ss_pred CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007 315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT 394 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 394 (432)
|+-+++|+.|.+|+||.++.+...... ... --..|.+|.||.|.++
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiY-------------------------htk---------RMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIY-------------------------HTK---------RMQHVFCVKYSMDSKY 329 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhh-------------------------hHh---------hhheeeEEEEeccccE
Confidence 999999999999999999887622110 000 0124899999999999
Q ss_pred EEEEecCCeEEEEEecCC
Q 014007 395 VVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 395 l~~~~~dg~v~iw~~~~~ 412 (432)
+++|+.||.|++|.-...
T Consensus 330 i~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEecCCCcceeeeecchh
Confidence 999999999999997664
No 64
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=214.15 Aligned_cols=287 Identities=14% Similarity=0.174 Sum_probs=212.6
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEE--EeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIF--RRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
-.+..|...|.++++.|.|..|++|+ |..|++||+....... .+.+.......|.++.|++.+..++..+..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~----- 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS----- 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC-----
Confidence 34667889999999999999999999 8889999997544322 233433455667788888766544433333
Q ss_pred CeEEEEeCCCCceeEEe-------------e-cCCceEEEEEecCcc--EEE--eCCeEEEEEcCCCe-eeEEEee----
Q 014007 156 NKVMIWDDHQSRCIGEL-------------S-FRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLK-LLHQIET---- 212 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~-------------~-~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~-~~~~~~~---- 212 (432)
...+|+| +.|..+.++ + |...+++.+|+|+.+ ++. .||+++|||+...+ .++.++.
T Consensus 236 aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 236 AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 6789998 444322221 2 667789999999754 443 39999999998743 3333322
Q ss_pred -ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCC--ceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 213 -IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
..-+++.|+|+++++.++ +|..||.|.+|+..+.. ...-.+|.. .|+||.||+||++|++-+.|++ +++
T Consensus 315 g~Rv~~tsC~~nrdg~~iA---agc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t-LKv 390 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIA---AGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT-LKV 390 (641)
T ss_pred CcccCceeeecCCCcchhh---hcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc-eee
Confidence 233567899999998643 35589999999987632 234457877 8999999999999999999999 999
Q ss_pred EECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeC------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007 286 FNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358 (432)
Q Consensus 286 wd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
||++.. +++....+.....+-+.++|||+.++|++|+. .|.+.+||..+...
T Consensus 391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~--------------------- 449 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT--------------------- 449 (641)
T ss_pred eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee---------------------
Confidence 999975 45655555444456789999999999999863 56899999988763
Q ss_pred EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
++.+......|..+.|+|.=+.|+.|+.||.+++| +|+
T Consensus 450 --------------v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy-Ydp 487 (641)
T KOG0772|consen 450 --------------VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY-YDP 487 (641)
T ss_pred --------------EEEecCCCceEEEEeecchhhheeeecCCCceEEE-ECc
Confidence 23344445668899999999999999999999997 355
No 65
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.7e-28 Score=206.89 Aligned_cols=279 Identities=13% Similarity=0.198 Sum_probs=232.5
Q ss_pred CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...|+++...|....+.+|+ |..+.++|....+.. ..++ ||...|..+.++++...+++++.| ..|++|..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l--~~~~-Gh~kki~~v~~~~~~~~v~~aSad-----~~i~vws~ 290 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL--ATLK-GHTKKITSVKFHKDLDTVITASAD-----EIIRVWSV 290 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh--hhcc-CcceEEEEEEeccchhheeecCCc-----ceEEeecc
Confidence 46788999998867788888 557999998777655 6676 899999999999999999999999 99999998
Q ss_pred CCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc--CCcceEEEecCCCcEEEEeecCC
Q 014007 164 HQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 164 ~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
.......... |.++|+.+..+|.|.|+++ |++..+.|++++..+....... -.+++.+|+|||- +++ .|..
T Consensus 291 ~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL--ifg-tgt~ 367 (506)
T KOG0289|consen 291 PLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL--IFG-TGTP 367 (506)
T ss_pred ccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce--EEe-ccCC
Confidence 7776655555 9999999999999999984 8899999999998887765432 2467889999984 444 5779
Q ss_pred CCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007 238 KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 238 d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
|+.|+|||+.+ .....|.+|.++|..++|+.+|.+|++++.|+. |++||++..+...++... ....+.++.|.+.|.
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~-~~~~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLD-EKKEVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecc-ccccceeEEEcCCCC
Confidence 99999999998 456678999999999999999999999999999 999999999988888854 334799999999999
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 396 (432)
+|+.++.|=.|++++-.+..- .++..+..|.+..+.+.|....++++
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k~W---------------------------------~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTKSW---------------------------------TEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred eEEeecceeEEEEEecccccc---------------------------------eeeehhhhcccccceeeecccceEEe
Confidence 999997776666665444320 11445667778899999999999999
Q ss_pred EEecCCeEEEEEe
Q 014007 397 ILGMDGSFYRCQF 409 (432)
Q Consensus 397 ~~~~dg~v~iw~~ 409 (432)
+++.|..++++.+
T Consensus 493 s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 493 STSMDAILRLYAL 505 (506)
T ss_pred eccchhheEEeec
Confidence 9999999998765
No 66
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.9e-28 Score=197.56 Aligned_cols=288 Identities=18% Similarity=0.183 Sum_probs=210.0
Q ss_pred CCCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEe-cCCCCC
Q 014007 75 SPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALV-GGGPDP 151 (432)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~-s~~~d~ 151 (432)
+.....+.+|.+.|++++|+.||++||+++ |+.|+||++..+.....+.+. .-.-...+.+.|.||-..++ +....
T Consensus 76 pl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g- 154 (420)
T KOG2096|consen 76 PLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG- 154 (420)
T ss_pred chhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC-
Confidence 344578899999999999999999999998 555999999765543222221 01122446677888865443 33333
Q ss_pred CCCCCeEEEEeCCCCc---e------eE--Eee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC
Q 014007 152 QYPLNKVMIWDDHQSR---C------IG--ELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN 215 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~---~------~~--~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~ 215 (432)
.++++|-....+ . +. .+. |.-.+..+-+..++.++++ |..|.+|+++ |+.+..+.....
T Consensus 155 ----~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 155 ----NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS 229 (420)
T ss_pred ----CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc
Confidence 689999764321 1 11 122 5566777777788888884 8899999997 899999887777
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccC---------CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw 286 (432)
.....+++|+|+.+ +++| .-..|++|..-- .++..+.+|...|..++|+++...+++.+.||+ ++||
T Consensus 230 ~n~~aavSP~GRFi--a~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriw 305 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFI--AVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIW 305 (420)
T ss_pred cccceeeCCCCcEE--EEec-CCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEe
Confidence 77889999999844 4445 678899998642 234567899999999999999999999999999 9999
Q ss_pred ECCC-------CceEEEEEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007 287 NTLD-------GTLLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS 357 (432)
Q Consensus 287 d~~~-------~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
|+.- .+.+++.... ...+....++.+|.|+.||... ...+++|..++++.....
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~---------------- 368 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL---------------- 368 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH----------------
Confidence 9742 2333333211 1123455899999999987764 557999999998744322
Q ss_pred eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
-+.|++.|.+++|+++|+++++++ |..++++.
T Consensus 369 ------------------e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 369 ------------------EDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred ------------------HHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 235888999999999999999887 77888865
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.6e-28 Score=228.15 Aligned_cols=290 Identities=18% Similarity=0.201 Sum_probs=229.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe----------eEEEeecccCcceeEEEEeeeCCeEEEec
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR----------EIFRRDFERGGGIGVVEMLFRCNILALVG 146 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~---~~~i~iw~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s 146 (432)
....+...|.+|..+|||..+|+|+ |++++||+.+..- .....+. ..|...|.++.|++||.+||+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEee
Confidence 3444566799999999999999998 6668899875321 1111222 368899999999999999999
Q ss_pred CCCCCCCCCCeEEEEeCCC------------------CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007 147 GGPDPQYPLNKVMIWDDHQ------------------SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL 204 (432)
Q Consensus 147 ~~~d~~~~~~~v~iwd~~~------------------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~ 204 (432)
|++| +.|.||+... .+++..+. |...|..++|+|++.++++ |++|.||+..+.
T Consensus 87 GSDD-----~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 87 GSDD-----RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred ccCc-----ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc
Confidence 9999 9999998662 12455666 9999999999999999994 999999999999
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc------CCceeEEEEcCCCCEEEEEc
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH------DSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~ 277 (432)
+.+..+++|...|..+.|.|-|+++ ++- +.|++|++|++.. +..+.+.++ ......+.|||||++|++..
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~Gky~--ASq-sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIGKYF--ASQ-SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eeeeeeecccccccceEECCccCee--eee-cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999999854 443 3899999999766 333333332 34578999999999999864
Q ss_pred C----CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-----CC------------EEEEEeCCCeEEEEEecCCC
Q 014007 278 T----KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----AQ------------WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 278 ~----dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~ 336 (432)
. -.+ +.|.+-.+.+.-..|-+ |.+++.++.|+|. .+ .+|+|+.|++|-||.....+
T Consensus 239 A~n~~~~~-~~IieR~tWk~~~~LvG--H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKST-IAIIERGTWKVDKDLVG--HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcce-eEEEecCCceeeeeeec--CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 3 224 88998877887777776 6689999999981 11 57889999999999997776
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGG 415 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~ 415 (432)
++-.. ...-+..|..++|+|||-.|+.++.||+|.+..++...-+
T Consensus 316 Pl~vi----------------------------------~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 316 PLFVI----------------------------------HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred chhhh----------------------------------hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhC
Confidence 44211 1222356999999999999999999999999999775443
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.2e-26 Score=179.09 Aligned_cols=283 Identities=14% Similarity=0.203 Sum_probs=222.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcC------CCe-------eEEEeecccCcceeEEEEeeeCCeEEEecCCC
Q 014007 84 PPPTLLHISFNQDHGCFAAGTD-HGFRIYNCD------PFR-------EIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~------~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (432)
-...|.+++|+|.|.+.|+|+. ++++|.... ... .+..+.- .+|...|.+.+|++.+..+++|+.
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~-khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRN-KHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeec-cccCccEEEEEecCccCeEEecCC
Confidence 4568999999999999999984 447665431 100 0111222 378899999999999999999999
Q ss_pred CCCCCCCeEEEEeCCCCce-----eEEee-cCCceEEEEEecC----ccEEEe----CCeEEEEEcCCCeeeEEEeeccC
Q 014007 150 DPQYPLNKVMIWDDHQSRC-----IGELS-FRSEVRSVKLRRD----RIIVVL----EQKIFVYNFADLKLLHQIETIAN 215 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~~~-----~~~~~-~~~~v~~~~~~~~----~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~ 215 (432)
| .+|++.-++...+ ..++. |.+.|..++|-.+ +.++++ |-.|++-|..+|+..+.+.+|.+
T Consensus 110 d-----k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtg 184 (350)
T KOG0641|consen 110 D-----KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTG 184 (350)
T ss_pred C-----ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcc
Confidence 9 9999987654332 23455 9999999999754 556664 66899999999999999999888
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeee--c-----cCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--A-----HDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~--~-----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
.+.. -+++++- .++ +|+.|.+|++||++-... .++. - ..+.|.+++..|.|++|++|-.|.. ..+||
T Consensus 185 hila-lyswn~~--m~~-sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dss-c~lyd 259 (350)
T KOG0641|consen 185 HILA-LYSWNGA--MFA-SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS-CMLYD 259 (350)
T ss_pred cEEE-EEEecCc--EEE-ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCc-eEEEE
Confidence 7633 3566653 334 588999999999987433 3322 1 2357999999999999999999999 99999
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (432)
++.++.++.+.. |...|.++.|+|...||++++.|..|++-|++..- .+
T Consensus 260 irg~r~iq~f~p--hsadir~vrfsp~a~yllt~syd~~ikltdlqgdl-a~---------------------------- 308 (350)
T KOG0641|consen 260 IRGGRMIQRFHP--HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL-AH---------------------------- 308 (350)
T ss_pred eeCCceeeeeCC--CccceeEEEeCCCceEEEEecccceEEEeecccch-hh----------------------------
Confidence 999999999985 67899999999999999999999999999997542 11
Q ss_pred ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+..+.....|.+.+..+.|+|..-.+++.+.|.++.+|.++
T Consensus 309 --el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 309 --ELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred --cCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 11144566788889999999998889999999999999875
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.3e-27 Score=209.10 Aligned_cols=239 Identities=21% Similarity=0.342 Sum_probs=205.0
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.....|...+..+.|+|++++|++++ ++.|++|++...+.. ..+. .+...+.++.|.+++.++++++.+ +.
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~ 116 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV--RTLT-GHTSYVSSVAFSPDGRILSSSSRD-----KT 116 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce--EEEe-ccCCcEEEEEEcCCCCEEEEecCC-----Ce
Confidence 34566888899999999999888888 555999999876544 3343 577789999999998888888877 99
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
|++||+.+++.+..+. |...+.++.|++++.+++ . ++.|++||+++++.+..+..+...+..+.++++++.+++++
T Consensus 117 i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred EEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec
Confidence 9999999888888888 888999999999888777 3 89999999998888888888888899999999987665432
Q ss_pred ecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 234 PGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
.++.|++||++... ...+..|...+.++.|+|++.++++++.++. |++||+.+++.+..+.. |...+.+++|+
T Consensus 197 ---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~ 270 (289)
T cd00200 197 ---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWS 270 (289)
T ss_pred ---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEEC
Confidence 59999999998744 4455588899999999999999988888999 99999999988888874 66789999999
Q ss_pred CCCCEEEEEeCCCeEEEEE
Q 014007 313 SNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd 331 (432)
+++++|++++.||.|++|+
T Consensus 271 ~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 271 PDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCEEEEecCCCeEEecC
Confidence 9999999999999999996
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1e-27 Score=223.71 Aligned_cols=272 Identities=19% Similarity=0.294 Sum_probs=225.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
.+...+.+..|. ..++++++ +..|++|+..++.... ..+. +|...|.++.+...+..+++|+.| .++++|
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~-GH~g~V~~l~~~~~~~~lvsgS~D-----~t~rvW 276 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLIL-TRLV-GHFGGVWGLAFPSGGDKLVSGSTD-----KTERVW 276 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEE-eecc-CCCCCceeEEEecCCCEEEEEecC-----CcEEeE
Confidence 367788999998 34566666 5669999988776653 3365 899999999999888899999999 999999
Q ss_pred eCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 162 DDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 162 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
|..+|++...+. |.+.|.++...+.-..-. .|.+|++|++.++..++.+.+|..+|.++.+. ++ +++ +|+.|+
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~--~lv-sgs~d~ 351 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP--LLV-SGSYDG 351 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC--EEE-EEecCc
Confidence 999999999999 999999988765544433 49999999999999999999899999988888 33 333 466899
Q ss_pred cEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCE
Q 014007 240 QVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQW 317 (432)
Q Consensus 240 ~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~ 317 (432)
.|++||+.. +.++.+.+|...|+++.+.+. .++++|+.|++ |++||+++. +++.++.. |..-+..+.+ .+++
T Consensus 352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~~ 425 (537)
T KOG0274|consen 352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDNF 425 (537)
T ss_pred eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccce
Confidence 999999998 556788999999999988665 78999999999 999999999 99999985 5566766655 6789
Q ss_pred EEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEE
Q 014007 318 LAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVV 396 (432)
Q Consensus 318 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 396 (432)
|++++.|++|++||..+++++. .+.+ |.+.|..+++. ...++
T Consensus 426 Lvs~~aD~~Ik~WD~~~~~~~~-----------------------------------~~~~~~~~~v~~l~~~--~~~il 468 (537)
T KOG0274|consen 426 LVSSSADGTIKLWDAEEGECLR-----------------------------------TLEGRHVGGVSALALG--KEEIL 468 (537)
T ss_pred eEeccccccEEEeecccCceee-----------------------------------eeccCCcccEEEeecC--cceEE
Confidence 9999999999999999988543 3444 45677778765 57889
Q ss_pred EEecCCeEEEEEecC
Q 014007 397 ILGMDGSFYRCQFDP 411 (432)
Q Consensus 397 ~~~~dg~v~iw~~~~ 411 (432)
+++.||.+++|++..
T Consensus 469 ~s~~~~~~~l~dl~~ 483 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRS 483 (537)
T ss_pred EEecCCeeEEEeccc
Confidence 999999999998755
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=198.86 Aligned_cols=289 Identities=14% Similarity=0.169 Sum_probs=230.1
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC------------C----eeEEEeecccCcceeEEEEeeeCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP------------F----REIFRRDFERGGGIGVVEMLFRCN 140 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~------------~----~~~~~~~~~~~~~~~v~~~~~~~~ 140 (432)
...+..|...+.+.+|++||.++|+|+ |..|+|.|++. + .....+++. .|...|.++.|+|.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHPr 183 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHPR 183 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecch
Confidence 355778999999999999999999999 55699999861 0 112234454 68889999999999
Q ss_pred eEEEecCCCCCCCCCCeEEEEeCCCCceeE---EeecCCceEEEEEecCccEEEe--C-CeEEEEEcCCCeeeEEE---e
Q 014007 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRDRIIVVL--E-QKIFVYNFADLKLLHQI---E 211 (432)
Q Consensus 141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~--d-~~i~i~d~~~~~~~~~~---~ 211 (432)
...|++++.| ++|++||+.+....+ .+....+|.++.|+|.|.+++. | ..+++||+++.++...- .
T Consensus 184 e~ILiS~srD-----~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 184 ETILISGSRD-----NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred hheEEeccCC-----CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc
Confidence 9999999999 999999998754433 4446789999999999999884 4 58999999998775443 3
Q ss_pred eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeee-ccC-CceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007 212 TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM-AHD-SRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~-~~~-~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~ 288 (432)
.|...|+.+.+++.++.. + .++.||.|++||--+ +++.++. +|. ..|.+..|..+|+|+++.+.|.. +++|.+
T Consensus 259 qht~ai~~V~Ys~t~~lY--v-TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~-vkLWEi 334 (430)
T KOG0640|consen 259 QHTGAITQVRYSSTGSLY--V-TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST-VKLWEI 334 (430)
T ss_pred ccccceeEEEecCCccEE--E-EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce-eeeeee
Confidence 567788899999998743 3 356999999999766 4445543 564 46899999999999999999999 999999
Q ss_pred CCCceEEEEEeCCCcC---ceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 289 LDGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 289 ~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
.+++++.++.+.+..+ --+...|+....|++.-. ..+.+.-||.++...+.-
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l------------------------ 390 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL------------------------ 390 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh------------------------
Confidence 9999999998753222 234566877778887765 467899999998763211
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
--.+|++.+..+.-||.+.-+++|+.|-..++|.-.
T Consensus 391 ----------~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 391 ----------LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ----------cccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 124799999999999999999999999999999754
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-28 Score=208.99 Aligned_cols=243 Identities=18% Similarity=0.279 Sum_probs=196.9
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..++.+|..+|..+.||||.++|++++ +..+.+||++++... ..+..++...+.+++|.||+..+++|+.| +
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d-----r 334 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPD-----R 334 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCC-----C
Confidence 467889999999999999999887776 666999999998876 44544567899999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 157 KVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
.+..||+. |..+...+ -...|.++++++||++++ .|..|++++.++......+ ....+++.++++.+++..++
T Consensus 335 ~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 335 TIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALV 412 (519)
T ss_pred cEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEE
Confidence 99999965 44455444 346799999999999887 3899999998875544433 34568889999999876554
Q ss_pred EeecCCCCcEEEEEccCC-ceeeeeccCCc--eeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 232 VCPGLQKGQVRVEHYASK-RTKFIMAHDSR--IACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~--i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
- -.+..+++||+... .++.+.+|... +-.-+|-- +..++++|++|+. |+||+..+++++.++.+ |...|+
T Consensus 413 n---L~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsG--Hs~~vN 486 (519)
T KOG0293|consen 413 N---LQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSG--HSKTVN 486 (519)
T ss_pred E---cccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecC--Ccceee
Confidence 3 37899999999873 44567777654 32333433 5589999999999 99999999999999997 568999
Q ss_pred EEEECCC-CCEEEEEeCCCeEEEEEecCC
Q 014007 308 SLAFSSN-AQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 308 ~~~~s~~-~~~l~~~~~dg~i~iwd~~~~ 335 (432)
+++|+|. -.++|++++||+|+||.....
T Consensus 487 cVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 487 CVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999995 468999999999999987654
No 73
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=1.3e-27 Score=207.72 Aligned_cols=281 Identities=12% Similarity=0.145 Sum_probs=226.9
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe-eEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR-EIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
....|..-|.++.+|...+.+.+|+.++|+|||+.... ......+. ......+.++...+|+..|+.|+.- .+
T Consensus 414 ~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-----st 488 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-----ST 488 (705)
T ss_pred hhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-----ce
Confidence 34558888899999999999999999999999995322 11112221 1356778889999999999999887 89
Q ss_pred EEEEeCCCCceeE--Eee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 158 VMIWDDHQSRCIG--ELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 158 v~iwd~~~~~~~~--~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+.|||+....... ++. ..-.+.+++.+||.++.+ +||.|.|||+.+...++.+++|.+.+.++.++++|..++
T Consensus 489 lsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW- 567 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW- 567 (705)
T ss_pred eeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-
Confidence 9999998765433 333 345678899999998777 499999999999999999999999999999999998776
Q ss_pred EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
+|+-|.+|+.||++.++...-....+.|.++.++|++.+|+.|-+++. +.|......+. +.+ +.|+.-|.++.|
T Consensus 568 --TGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~-vevlh~skp~k-yql--hlheScVLSlKF 641 (705)
T KOG0639|consen 568 --TGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSN-VEVLHTSKPEK-YQL--HLHESCVLSLKF 641 (705)
T ss_pred --cCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCc-EEEEecCCccc-eee--cccccEEEEEEe
Confidence 466999999999998665444455778999999999999999999999 88877543332 233 347899999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec-CCCceEEEEcc
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGH 390 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~ 390 (432)
.+.|+++++.+.|+.+-.|...-+..+ +... ...|.++..|.
T Consensus 642 a~cGkwfvStGkDnlLnawrtPyGasi-------------------------------------FqskE~SsVlsCDIS~ 684 (705)
T KOG0639|consen 642 AYCGKWFVSTGKDNLLNAWRTPYGASI-------------------------------------FQSKESSSVLSCDISF 684 (705)
T ss_pred cccCceeeecCchhhhhhccCccccce-------------------------------------eeccccCcceeeeecc
Confidence 999999999999999999998877632 1112 24699999999
Q ss_pred CCCEEEEEecCCeEEEEEe
Q 014007 391 QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~ 409 (432)
|.++|++|+.|....+|.+
T Consensus 685 ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 685 DDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CceEEEecCCCcceEEEEE
Confidence 9999999999998888875
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=6.4e-27 Score=235.28 Aligned_cols=261 Identities=16% Similarity=0.172 Sum_probs=203.6
Q ss_pred EEEEEcCCCeeEEE---eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----c----eeEEeecCC
Q 014007 108 FRIYNCDPFREIFR---RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----R----CIGELSFRS 176 (432)
Q Consensus 108 i~iw~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~----~~~~~~~~~ 176 (432)
+++|+......... ..+. .|...|.+++|++++.++++++.| +.|+|||+... . .+..+.+..
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~i~fs~dg~~latgg~D-----~~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 533 (793)
T PLN00181 460 CKYLSFSKLRVKADLKQGDLL-NSSNLVCAIGFDRDGEFFATAGVN-----KKIKIFECESIIKDGRDIHYPVVELASRS 533 (793)
T ss_pred hhhhcccceEEEEeecccccc-CCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEECCcccccccccccceEEecccC
Confidence 77787665443211 1122 478889999999999999999999 99999997542 1 223344567
Q ss_pred ceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-
Q 014007 177 EVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT- 251 (432)
Q Consensus 177 ~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~- 251 (432)
.+.+++|++. +.++++ |++|++||+.+++.+..+..|...|..++|+|....+ +++ |+.|+.|++||++.+..
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~-L~S-gs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTL-LAS-GSDDGSVKLWSINQGVSI 611 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCE-EEE-EcCCCEEEEEECCCCcEE
Confidence 8999999874 556663 9999999999999999999999999999999743333 343 45899999999987544
Q ss_pred eeeeccCCceeEEEEc-CCCCEEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 252 KFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 252 ~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
..+. +...|.++.|+ ++|.+|++|+.|+. |++||+++.+ .+..+.+ |...|.++.|. ++.+|++++.|++|+|
T Consensus 612 ~~~~-~~~~v~~v~~~~~~g~~latgs~dg~-I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~-~~~~lvs~s~D~~iki 686 (793)
T PLN00181 612 GTIK-TKANICCVQFPSESGRSLAFGSADHK-VYYYDLRNPKLPLCTMIG--HSKTVSYVRFV-DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEEe-cCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEECCCCCccceEecC--CCCCEEEEEEe-CCCEEEEEECCCEEEE
Confidence 3444 44689999995 57999999999999 9999998876 4555553 67899999997 7889999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
||+....... ....+..+.+|...++.++|++++++|++|+.||.|++|+.
T Consensus 687 Wd~~~~~~~~-----------------------------~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 687 WDLSMSISGI-----------------------------NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred EeCCCCcccc-----------------------------CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 9997642100 00114567789999999999999999999999999999986
Q ss_pred c
Q 014007 410 D 410 (432)
Q Consensus 410 ~ 410 (432)
.
T Consensus 738 ~ 738 (793)
T PLN00181 738 A 738 (793)
T ss_pred C
Confidence 4
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.9e-27 Score=212.76 Aligned_cols=245 Identities=14% Similarity=0.178 Sum_probs=211.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
....+.+.|+++.|+++|.+||+|..++ |.|||....+.. ..+.++|...|-+++|. ...+.+|+.+ +.|
T Consensus 212 l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~--~~~~~~h~~rvg~laW~--~~~lssGsr~-----~~I 282 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKT--RTLRGSHASRVGSLAWN--SSVLSSGSRD-----GKI 282 (484)
T ss_pred eEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccc--ccccCCcCceeEEEecc--CceEEEecCC-----CcE
Confidence 3344488999999999999999999666 999998876665 55553489999999998 5677788888 999
Q ss_pred EEEeCCCCceeEE-ee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 159 MIWDDHQSRCIGE-LS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 159 ~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
..+|+...+.... +. |...|..+.|++|+.++++ |+.+.|||.....++..+..|...|..++|+|-...++...
T Consensus 283 ~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 283 LNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred EEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEc
Confidence 9999998765554 55 9999999999999999995 88999999988889999999999999999999988887666
Q ss_pred ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE--cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS--STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~--~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
+|+.|+.|++||..++...........|.++.|++..+-|+++ ..++. |.||+..+.+.+..+.+ |...|..+++
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~ 439 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLAL 439 (484)
T ss_pred CCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEE
Confidence 7789999999999987776666678899999999988766664 34556 99999999999988886 6688999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+|||..+++|+.|.++++|++-...
T Consensus 440 SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 440 SPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred CCCCCEEEEecccCcEEeccccCCC
Confidence 9999999999999999999997753
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=4.1e-28 Score=193.04 Aligned_cols=243 Identities=15% Similarity=0.191 Sum_probs=207.5
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.-+..+|.+.|.+..++.+...-|+++ |-+-+|||.-++... ..+. |..-|..++|+.+...+++|+.+ .
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel--hsf~--hkhivk~~af~~ds~~lltgg~e-----k 122 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL--HSFE--HKHIVKAVAFSQDSNYLLTGGQE-----K 122 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh--hhhh--hhheeeeEEecccchhhhccchH-----H
Confidence 356789999999999999888888777 666999998888766 6775 88889999999999999999998 9
Q ss_pred eEEEEeCCCCc-eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 157 KVMIWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 157 ~v~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
.++|||++..+ +..++. |.+.|..+.|....+.+++ |++||+||.++++.++.+. ...+++++.++++|+.+.+
T Consensus 123 llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi 201 (334)
T KOG0278|consen 123 LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI 201 (334)
T ss_pred HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE
Confidence 99999987653 445565 9999999999887666663 8999999999999999986 4678899999999997766
Q ss_pred EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
+. .+.|.+||..+-.+..-..-...|.+..++|+...+++|++|.. ++.||..+++.+..+..+ |.++|.++.|
T Consensus 202 a~----gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~-~~kfDy~TgeEi~~~nkg-h~gpVhcVrF 275 (334)
T KOG0278|consen 202 AY----GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFK-VYKFDYNTGEEIGSYNKG-HFGPVHCVRF 275 (334)
T ss_pred ec----CceeEEeccccccceeeccCccccccccccCCCceEEecCcceE-EEEEeccCCceeeecccC-CCCceEEEEE
Confidence 53 47899999988444333445677999999999999999999999 999999999998887333 6799999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+|||...++|++||+|+||.+..++
T Consensus 276 SPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 276 SPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999999999998776
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=9.2e-27 Score=186.50 Aligned_cols=246 Identities=13% Similarity=0.164 Sum_probs=204.5
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCc-cEEE---eCCeEEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDR-IIVV---LEQKIFVY 199 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~~~---~d~~i~i~ 199 (432)
+|...+.+++|+.+|..+++++.| +++.+|++...+...... |.+.|-.++|+|.. ..++ .|.+|++|
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~d-----ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFD-----KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhhhcceEEEEcccCceeeecccC-----CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 688899999999999999999999 999999998886655544 78899999998743 3333 38899999
Q ss_pred EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
|++.+++...+......+ .+.|+|+|+++++ |+.|..|.+.|.++.++..-......+..+.|+.++.+++.....
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~---~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAV---GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEE---ecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 999999999887655544 6899999997653 458999999999997776666667788899999888888877788
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (432)
|+ |.|......+.+..++. |+....+|.|+|+|++||+|+.|-.+.+||++..-++.
T Consensus 169 G~-v~ILsypsLkpv~si~A--H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R-------------------- 225 (313)
T KOG1407|consen 169 GC-VEILSYPSLKPVQSIKA--HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER-------------------- 225 (313)
T ss_pred ce-EEEEecccccccccccc--CCcceEEEEECCCCceEeeccccceeeccChhHhhhhe--------------------
Confidence 99 99999999999999996 66899999999999999999999999999999876543
Q ss_pred eecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
.+.-++=+|..+.||.||++||+|++|..|-|-. .++|.++..++
T Consensus 226 ---------------~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~--vetGd~~~eI~ 270 (313)
T KOG1407|consen 226 ---------------CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE--VETGDRVWEIP 270 (313)
T ss_pred ---------------eeccccCceEEEEeccCcceeeccCccceEEeEe--cccCCeEEEee
Confidence 3334555699999999999999999999998844 35566555544
No 78
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-25 Score=185.53 Aligned_cols=253 Identities=14% Similarity=0.159 Sum_probs=201.5
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-e----CCe
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L----EQK 195 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~----d~~ 195 (432)
+.+. .....+.++.|+.+|..+++++.| ..++|||..+++.++++. ++-.+..++|......+. + |.+
T Consensus 8 k~f~-~~~~~i~sl~fs~~G~~litss~d-----Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 8 KVFR-ETNGKINSLDFSDDGLLLITSSED-----DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred cccc-cCCCceeEEEecCCCCEEEEecCC-----CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3443 357789999999999999998888 899999999999999998 677888888877655444 2 779
Q ss_pred EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE
Q 014007 196 IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT 275 (432)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 275 (432)
|+..++.+.+.++.+.+|...|..++++|-++.++ +++.|++|++||++....+.+..- ..-..++|+|+|-++|+
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~Fl---S~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFL---SSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDPEGLIFAL 157 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEE---ecccCCeEEeeEecCCCCceEEec-CCCcceeECCCCcEEEE
Confidence 99999999999999999999999999999986543 356899999999997655544322 23346789999999999
Q ss_pred EcCCCceEEEEECCCC--ceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 276 SSTKGTLVRIFNTLDG--TLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~~--~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
+..... |++||++.. .+..++... ......+.|.|||||++|+.++..+.+++.|.-+|..+.
T Consensus 158 ~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~------------- 223 (311)
T KOG1446|consen 158 ANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS------------- 223 (311)
T ss_pred ecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-------------
Confidence 998887 999999864 344455432 234689999999999999999999999999998887322
Q ss_pred CCCceeEeecccceeecceeeEEEEecCC---CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEG---SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
++.++.+ .--...|+||++++++|+.||+|.+|++ ++|.+....+.
T Consensus 224 ----------------------tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~--~tg~~v~~~~~ 272 (311)
T KOG1446|consen 224 ----------------------TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL--ETGKKVAVLRG 272 (311)
T ss_pred ----------------------eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc--CCCcEeeEecC
Confidence 2333321 1246789999999999999999999998 55665555444
No 79
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.8e-25 Score=209.43 Aligned_cols=223 Identities=9% Similarity=0.078 Sum_probs=170.2
Q ss_pred cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCe--------eeEEEee
Q 014007 146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLK--------LLHQIET 212 (432)
Q Consensus 146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~--------~~~~~~~ 212 (432)
+|+.+ +.|++|+......+..+. |.+.|.+++|+|+ +.++++ |++|++||+.++. ++..+.+
T Consensus 49 gGG~~-----gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g 123 (568)
T PTZ00420 49 GGGLI-----GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG 123 (568)
T ss_pred CCCce-----eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec
Confidence 45556 899999988777777787 9999999999996 667763 9999999997642 3345678
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~ 292 (432)
|...|..++|+|++..++ ++ ++.|+.|++||++++.......|...|.+++|+|+|.+|++++.|+. |+|||+++++
T Consensus 124 H~~~V~sVaf~P~g~~iL-aS-gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~ 200 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIM-CS-SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQE 200 (568)
T ss_pred CCCcEEEEEECCCCCeEE-EE-EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCc
Confidence 889999999999987553 33 34799999999998654433346788999999999999999999999 9999999999
Q ss_pred eEEEEEeCCCcCce-----EEEEECCCCCEEEEEeCCC----eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 293 LLQEVRRGADRAEI-----YSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 293 ~~~~~~~~~~~~~i-----~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
.+..+.+ |.+.+ ....|++++.+|++++.|+ .|+|||+++....
T Consensus 201 ~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p------------------------- 253 (568)
T PTZ00420 201 IASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA------------------------- 253 (568)
T ss_pred EEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc-------------------------
Confidence 9988876 43433 2334678999999988664 7999999864311
Q ss_pred cceeecceeeEE--EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 364 PKYFSSEWSVAQ--FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 364 ~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+.. +..+.+.+.-.-..++|.++++|+.|+.|++|++...
T Consensus 254 ---------l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 254 ---------LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ---------eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 111 2222233333334556889999999999999999653
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=205.87 Aligned_cols=235 Identities=14% Similarity=0.196 Sum_probs=200.3
Q ss_pred cceeEEEEeeeCCe--EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007 128 GGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNF 201 (432)
Q Consensus 128 ~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~ 201 (432)
....|.+++|+|.. .+.++++ -.|.||+..+...++++. +...+.++.|-.||++++. .|.|++||+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-------~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~ 97 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-------VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDM 97 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-------cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecc
Confidence 55688899998853 3444554 689999988888888777 8999999999999999995 689999998
Q ss_pred CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccCCceeEEEEcC-CCCEEEEEcCC
Q 014007 202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQ-DGQLLATSSTK 279 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~~sp-~~~~l~~~~~d 279 (432)
.+...++.+..|..++..+.|+|+++.+++ +|+.|+.+++||+.+..+. .+.+|+..|.|.+|+| +++++++|+.|
T Consensus 98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~--s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLV--SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred ccHHHHHHHhhccCceeEEEecccCCeEEE--ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 776678888999999999999999987654 4568999999999997764 6789999999999999 56689999999
Q ss_pred CceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007 280 GTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358 (432)
Q Consensus 280 g~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
|. |++||++.. ..+.++. |..+|-++.+-|.|..+++++ .+.|+|||+.++.++
T Consensus 176 g~-vrl~DtR~~~~~v~eln---hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql-------------------- 230 (487)
T KOG0310|consen 176 GK-VRLWDTRSLTSRVVELN---HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQL-------------------- 230 (487)
T ss_pred ce-EEEEEeccCCceeEEec---CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCcee--------------------
Confidence 99 999999987 6777777 778999999999999999987 567999999977643
Q ss_pred EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+.....|...|+|+++..++..|++|+-||.|++|++.
T Consensus 231 --------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 231 --------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred --------------hhhhhcccceEEEEEeecCCceEeecccccceEEEEcc
Confidence 22233488889999999999999999999999999853
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3.3e-26 Score=197.16 Aligned_cols=290 Identities=16% Similarity=0.198 Sum_probs=229.6
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeE---EEe-----------ecc-cCcceeEEEEeeeCCe
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREI---FRR-----------DFE-RGGGIGVVEMLFRCNI 141 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~---~~~-----------~~~-~~~~~~v~~~~~~~~~ 141 (432)
......|.-+|.|++++|++++..+++ ++.|.-|++.+++.. ... ... .+|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 467788999999999999999999988 455988998766532 111 011 1678889999999999
Q ss_pred EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCcc--EEE-eCCeEEEEEcCCCeeeEEEeeccCCc
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK 217 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 217 (432)
.++++|+.| ..|.||+..+.+.++.+. |.+.|.+++|-.... |.+ .|..|++|++.....+.++.+|.+.|
T Consensus 215 kylatgg~d-----~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLATGGRD-----RHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEecCCC-----ceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 999999999 999999999999999988 999999999986544 333 49999999999988888888998888
Q ss_pred ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEE
Q 014007 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~ 297 (432)
..+....-.+ . ++.|+.|+++++|++.......+.+|.+.+.|++|-.+. .+++|+.+|. |.+|++...+++.+.
T Consensus 290 ~~IdaL~reR--~-vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~-IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 290 LGIDALSRER--C-VTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGS-IALWSLLKKKPLFTS 364 (479)
T ss_pred eeechhcccc--e-EEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCce-EEEeeecccCceeEe
Confidence 7666555443 3 445669999999999777777788999999999998655 6789999999 999999999988877
Q ss_pred EeCC----------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007 298 RRGA----------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (432)
Q Consensus 298 ~~~~----------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (432)
.... ++..|++++..|...++|+|+.+|.|++|.+..+-.. +..
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-----------------i~~--------- 418 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-----------------INL--------- 418 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-----------------cce---------
Confidence 6431 1127999999999999999999999999999887310 000
Q ss_pred ecceeeEEEEecCCCceEEEEccCCCEEEEE-ecCCeEEEEEe
Q 014007 368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL-GMDGSFYRCQF 409 (432)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~iw~~ 409 (432)
+..+. -.+.|++++|+++|++|++| +....+--|-.
T Consensus 419 -----l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 419 -----LYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred -----eeecc-cccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 12222 23579999999999966554 55666655654
No 82
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=5.5e-26 Score=185.75 Aligned_cols=274 Identities=14% Similarity=0.146 Sum_probs=209.5
Q ss_pred CCcccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC-eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (432)
....+.....+.|.+|+|||... +|++|+ |++||+|+++.. .... +... .+...+.+++|+.++..+++++.|
T Consensus 18 kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~-~~~~PvL~v~WsddgskVf~g~~D-- 93 (347)
T KOG0647|consen 18 KDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQ-SHDGPVLDVCWSDDGSKVFSGGCD-- 93 (347)
T ss_pred cceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhh-ccCCCeEEEEEccCCceEEeeccC--
Confidence 44566777889999999999544 555666 999999999764 3333 3332 689999999999999999999999
Q ss_pred CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCcc--EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI--IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
+.+++||+.+++....-.|..+|..+.|-+... .+++ |.+|+.||.+...++.++... .. +.+.+-...
T Consensus 94 ---k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR--vYa~Dv~~p 167 (347)
T KOG0647|consen 94 ---KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER--VYAADVLYP 167 (347)
T ss_pred ---CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc-ce--eeehhccCc
Confidence 999999999997766666999999999998766 4553 999999999998888887643 23 333333333
Q ss_pred cEEEEeecCCCCcEEEEEccCCcee--ee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC--ceEEEEEeCCC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTK--FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRGAD 302 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~--~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~--~~~~~~~~~~~ 302 (432)
.+++++ .+..|.+|++++.... .. ....-.+.||+..+|....+.|+..|. +.|..+..+ +.-..|+.|..
T Consensus 168 m~vVat---a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtFkCHR~ 243 (347)
T KOG0647|consen 168 MAVVAT---AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTFKCHRS 243 (347)
T ss_pred eeEEEe---cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecce-EEEEecCCCCccCceeEEEecc
Confidence 444443 6799999999874322 11 223456889999999888899999999 999988876 44445555421
Q ss_pred -------cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007 303 -------RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ 375 (432)
Q Consensus 303 -------~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (432)
-..|.+|+|+|.-..|++++.||++.+||-+....++ .
T Consensus 244 ~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk-----------------------------------~ 288 (347)
T KOG0647|consen 244 TNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLK-----------------------------------T 288 (347)
T ss_pred CCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhh-----------------------------------c
Confidence 1358889999999999999999999999988765433 2
Q ss_pred EEecCCCceEEEEccCCCEEEEE
Q 014007 376 FRLVEGSPYIVAFGHQKNTVVIL 398 (432)
Q Consensus 376 ~~~~~~~v~~~~~s~~~~~l~~~ 398 (432)
...|..+|++.+|+.+|.++|-+
T Consensus 289 s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 289 SETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cCcCCCccceeEecCCCCEEEEE
Confidence 34567789999999999987744
No 83
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=209.24 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=180.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEE-----------eecccCcceeEEEEeeeC-CeEEEecCCCC
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFR-----------RDFERGGGIGVVEMLFRC-NILALVGGGPD 150 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d 150 (432)
+-..|.....++|+..+++++.+. ...|+...+..... ..+. +|...|.++.|+| ++..+++++.|
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 334555566666755555554433 45565433322110 1233 7889999999999 78899999999
Q ss_pred CCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCc-cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007 151 PQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQIETIANPKG 218 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~ 218 (432)
++|++||+.++ +.+..+. |...|.+++|+|++ .++++ |++|+|||+++++.+..+..|...+.
T Consensus 98 -----gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 98 -----GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred -----CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE
Confidence 99999999765 2455666 89999999999975 45553 89999999999999989988999999
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCc-eeEEEEcCCCCEEEEEc----CCCceEEEEECCCCc
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSR-IACFALTQDGQLLATSS----TKGTLVRIFNTLDGT 292 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~-i~~~~~sp~~~~l~~~~----~dg~~i~vwd~~~~~ 292 (432)
.++|+|++..+ ++ ++.|+.|++||++++. +..+.+|.+. +..+.|.+++..|++++ .|+. |++||+++..
T Consensus 173 sla~spdG~lL--at-gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~~ 248 (493)
T PTZ00421 173 SLEWNLDGSLL--CT-TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKMA 248 (493)
T ss_pred EEEEECCCCEE--EE-ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCCC
Confidence 99999998744 33 4589999999999854 4567778764 45678999887777654 4788 9999998765
Q ss_pred e-EEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCC
Q 014007 293 L-LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSG 337 (432)
Q Consensus 293 ~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 337 (432)
. +.....+ ....+....|++++.+|++++ .|+.|++||+.+++.
T Consensus 249 ~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 249 SPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 3 3333322 334566778999999999887 599999999998763
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=187.33 Aligned_cols=239 Identities=15% Similarity=0.257 Sum_probs=198.1
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE--EEecCCCCCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPDPQYPLN 156 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~~~~~ 156 (432)
....|..+|++++.+ +.++|+|+ |.+|+|||+...... ..+. .|...|+++.|.++.. .|++|..| |
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql--g~ll-~HagsitaL~F~~~~S~shLlS~sdD-----G 107 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL--GILL-SHAGSITALKFYPPLSKSHLLSGSDD-----G 107 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh--ccee-ccccceEEEEecCCcchhheeeecCC-----C
Confidence 456799999999986 78999998 777999999776554 3443 5899999999988775 89999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.|.+|+....+++..++ |.+.|+.++++|.+++..+ |+.++.||+-+|+.-..+.. ......+.|+|.|+++++.
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~ 186 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVS 186 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEE
Confidence 99999999999999999 9999999999999998874 89999999999876555543 2334469999999987765
Q ss_pred eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE-
Q 014007 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF- 311 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~- 311 (432)
. ...|-+|.++...+.........+.|+.|. ++..|++|..|+. |++||..+..++..+.. |+..|.++.+
T Consensus 187 ~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~A--H~~RVK~i~~~ 258 (362)
T KOG0294|consen 187 G----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLA--HENRVKDIASY 258 (362)
T ss_pred e----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeec--chhheeeeEEE
Confidence 3 468899999886554444445678888886 5668999999999 99999999999988885 7789999984
Q ss_pred -CCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 312 -SSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 312 -s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.|++.+|++++.||.|+|||++....
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccccc
Confidence 56788999999999999999988753
No 85
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1.9e-25 Score=183.32 Aligned_cols=270 Identities=14% Similarity=0.189 Sum_probs=204.8
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
++...+.+.|++|.|+|.+..|++++ |+.+++|++...... ..+. |..++.+++|.++. .+++|+-| |.
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~--~~~~--~~~plL~c~F~d~~-~~~~G~~d-----g~ 76 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLK--LKFK--HGAPLLDCAFADES-TIVTGGLD-----GQ 76 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhh--hhee--cCCceeeeeccCCc-eEEEeccC-----ce
Confidence 34455678999999999877666666 989999999877544 5564 88999999999854 45566666 99
Q ss_pred EEEEeCCCCceeEEeecCCceEEEEEecC-ccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRD-RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
|+.+|+.+++....-.|..+|.++.+++- +.+++ .|++|++||.+.......+... + ...+++-.++.+++++
T Consensus 77 vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-k--kVy~~~v~g~~LvVg~- 152 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-K--KVYCMDVSGNRLVVGT- 152 (323)
T ss_pred EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-c--eEEEEeccCCEEEEee-
Confidence 99999999988777779999999999975 44444 3999999999875444444332 2 3456666677776554
Q ss_pred cCCCCcEEEEEccCCceee---eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC----ceEEEEEeCCCc----
Q 014007 235 GLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGADR---- 303 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----~~~~~~~~~~~~---- 303 (432)
.+..|.+||+++..... -..-+-.+.|+++-|++.=.++++.||. |.+=.+... +....|+.|...
T Consensus 153 --~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGR-VavE~~d~s~~~~skkyaFkCHr~~~~~~ 229 (323)
T KOG1036|consen 153 --SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGR-VAVEYFDDSEEAQSKKYAFKCHRLSEKDT 229 (323)
T ss_pred --cCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecce-EEEEccCCchHHhhhceeEEeeecccCCc
Confidence 78999999999843221 2234567899999998888999999998 877655544 334455543211
Q ss_pred ---CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007 304 ---AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (432)
Q Consensus 304 ---~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (432)
.+|.+|+|+|-...|++|+.||.|.+||+.+.+.+.. +..-+
T Consensus 230 ~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q-----------------------------------~~~~~ 274 (323)
T KOG1036|consen 230 EIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ-----------------------------------LAKYE 274 (323)
T ss_pred eEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh-----------------------------------ccCCC
Confidence 3799999999999999999999999999999875432 22234
Q ss_pred CCceEEEEccCCCEEEEEec
Q 014007 381 GSPYIVAFGHQKNTVVILGM 400 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~ 400 (432)
..|.+++|+.||..||+++.
T Consensus 275 ~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CceEEEEeccCCCeEEEEec
Confidence 56999999999999999875
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.1e-27 Score=185.83 Aligned_cols=238 Identities=15% Similarity=0.172 Sum_probs=191.4
Q ss_pred CCCCCeEEEEEcCCCC-E-EEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEE
Q 014007 83 SPPPTLLHISFNQDHG-C-FAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~-~-l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~ 159 (432)
.-.+.+..++|+++.. . +++.+|+.++|||+.... .....++ .|...|.++.|++ ++..+++++-| ++|+
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD-----~TiK 130 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-KPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWD-----GTIK 130 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-cchhHHH-hhhhheEEeccccccceeEEeeccC-----CceE
Confidence 3467899999998654 3 444457779999964332 2335665 7999999999987 45667777999 9999
Q ss_pred EEeCCCCceeEEee-cCCceEEEEEecC-ccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 160 IWDDHQSRCIGELS-FRSEVRSVKLRRD-RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
+|+...++.+.++. |...|...+|+|. ..+++ .|+++++||++.......+..|...+.++.|+.-...+ +++
T Consensus 131 LW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~v-l~T- 208 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNV-LAT- 208 (311)
T ss_pred eecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcE-EEe-
Confidence 99999999999999 9999999999995 45555 39999999998744444488888888899998877655 444
Q ss_pred cCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEEEE
Q 014007 235 GLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 235 g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~ 310 (432)
|+.|+.|+.||++. ..+..+.+|.-.|..++|||. ..+||+++.|=+ +||||...+. ++.+... |...+..+.
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~~--HtEFv~g~D 285 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVDH--HTEFVCGLD 285 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhhc--cceEEeccc
Confidence 56999999999998 456677899999999999994 568999999999 9999987543 4444542 778899999
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEe
Q 014007 311 FSS-NAQWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 311 ~s~-~~~~l~~~~~dg~i~iwd~ 332 (432)
||+ ++.++|+++.|+.++||+-
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccccCceeeecccccceeeecc
Confidence 998 5679999999999999984
No 87
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=206.85 Aligned_cols=200 Identities=14% Similarity=0.219 Sum_probs=159.0
Q ss_pred cCCceEEEEEec-CccEEEe---CCeEEEEEcCCC-------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 174 FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADL-------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 174 ~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
|.+.|.+++|+| ++.++++ |++|++||+.++ +.+..+.+|...|..++|+|++..++ ++ ++.|+.|+
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL-aS-gs~DgtVr 151 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL-AS-AGADMVVN 151 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE-EE-EeCCCEEE
Confidence 889999999999 7777763 899999999764 34667888999999999999876543 33 34899999
Q ss_pred EEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 243 VEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 243 i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
+||+..+. ...+..|...|.+++|+|+|.+|++++.|+. |++||+++++.+..+..+. ...+..+.|.+++..|+++
T Consensus 152 IWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 152 VWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEecCC-CCcceEEEEcCCCCeEEEE
Confidence 99998854 4567789999999999999999999999999 9999999999988887542 2235578899988887765
Q ss_pred e----CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccCCCEEE
Q 014007 322 S----DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVV 396 (432)
Q Consensus 322 ~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~ 396 (432)
+ .|+.|++||+++.... +.....+. ..+....|++++++|+
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p----------------------------------~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASP----------------------------------YSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCc----------------------------------eeEeccCCCCceEEEEEcCCCCEEE
Confidence 4 4789999999875421 11112222 3455678999999999
Q ss_pred EEec-CCeEEEEEecC
Q 014007 397 ILGM-DGSFYRCQFDP 411 (432)
Q Consensus 397 ~~~~-dg~v~iw~~~~ 411 (432)
+++. ||.|++|++..
T Consensus 276 lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 276 IGSKGEGNIRCFELMN 291 (493)
T ss_pred EEEeCCCeEEEEEeeC
Confidence 8884 99999999964
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3e-26 Score=216.99 Aligned_cols=253 Identities=17% Similarity=0.155 Sum_probs=204.8
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------C----------eeEEEeecccCcceeEEEEeee
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------F----------REIFRRDFERGGGIGVVEMLFR 138 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~------~----------~~~~~~~~~~~~~~~v~~~~~~ 138 (432)
........|.+.|+|+.|+|||++||+|+|+. |.||.... + .......+. +|...|.+++|+
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~Ws 138 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVNWS 138 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceeccC
Confidence 34456778999999999999999999999888 99998762 0 011224554 799999999999
Q ss_pred CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc
Q 014007 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA 214 (432)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~ 214 (432)
|++.++++++.| ++|.|||..+.+.+..+. |.+.|.++.|.|-|+|+++ |++|++|++.+....+.+..+.
T Consensus 139 p~~~~lvS~s~D-----nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 139 PDDSLLVSVSLD-----NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred CCccEEEEeccc-----ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence 999999999999 999999999999999999 9999999999999999995 8899999988877777665433
Q ss_pred C------CcceEEEecCCCcEEEEeec-CCCCcEEEEEccC-CceeeeeccCCceeEEEEcCC-----CC----------
Q 014007 215 N------PKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQD-----GQ---------- 271 (432)
Q Consensus 215 ~------~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~-----~~---------- 271 (432)
. .+..+.|+|||.++..+.+- +.-..+.|.+-.+ +.-..+.+|.+++.+++|+|. .+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~ 293 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY 293 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence 2 34568999999976543210 1234566766655 335668899999999999981 11
Q ss_pred --EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 272 --LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 272 --~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.+|+|+.|++ |.||.....+++..+..- ....|.+++|+|||..|++++.||+|.++.++..+
T Consensus 294 y~i~AvgSqDrS-lSVW~T~~~RPl~vi~~l-f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 294 YCIAAVGSQDRS-LSVWNTALPRPLFVIHNL-FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eEEEEEecCCcc-EEEEecCCCCchhhhhhh-hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 6889999999 999998888877666532 34789999999999999999999999999987644
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.4e-26 Score=196.72 Aligned_cols=238 Identities=18% Similarity=0.277 Sum_probs=201.0
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..++.+..+.|+++.|.++++.+++++ |+.+++|+++..+.. .++. +|...|+++.|.-....+++++.| .
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--~TLs-GHtdkVt~ak~~~~~~~vVsgs~D-----R 283 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--HTLS-GHTDKVTAAKFKLSHSRVVSGSAD-----R 283 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh--hhhc-ccccceeeehhhccccceeecccc-----c
Confidence 356777788999999999999776666 666999999877765 6777 799999999998877779999999 9
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
+|++||+....+.+++-..+.+.+|..+ ...++ .|++|++||++...+...+..+. .++++.+++++..++ .+
T Consensus 284 tiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lL-ss 359 (459)
T KOG0288|consen 284 TIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELL-SS 359 (459)
T ss_pred hhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEe-ee
Confidence 9999999999999888878888888877 33333 48899999999999988887655 899999999988764 33
Q ss_pred ecCCCCcEEEEEccCCceeeee-c----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 234 PGLQKGQVRVEHYASKRTKFIM-A----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~~~~-~----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
+.|..+.++|+++..+.... + .....+.+.|||++.|+++|+.||. |+||++.++++...+........|++
T Consensus 360 --sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 360 --SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred --cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCcceEE
Confidence 48999999999997665432 1 2334889999999999999999999 99999999999999887543347999
Q ss_pred EEECCCCCEEEEEeCCCeEEEE
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iw 330 (432)
++|+|.|..|++++.++.+.+|
T Consensus 437 ~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.4e-26 Score=205.67 Aligned_cols=242 Identities=12% Similarity=0.191 Sum_probs=203.4
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC---ccEEEe---CCeEEEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD---RIIVVL---EQKIFVYN 200 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~---~~~~~~---d~~i~i~d 200 (432)
....+.+++.+|++.+|++|+.. |++++|++...+....++ |...|.|+.|+.. .+++++ |.-|++||
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~-----GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRG-----GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred cccceEEEEECCCcceecccCcc-----CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 34578899999999999999999 999999999988888888 9999999999863 455663 77899999
Q ss_pred cCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc-----CCceeEEEEcCCCCEE
Q 014007 201 FAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH-----DSRIACFALTQDGQLL 273 (432)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~-----~~~i~~~~~sp~~~~l 273 (432)
... ..+++++.+|...|+.+.|.-.|-+.-++++| .|..|.+--.+. .....+..| ...++.|+..|..+++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscG-ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLV 611 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEecc-CchhhheehhccccCceeccccccccccceEEEeeeCCCcceE
Confidence 865 45678899999999999999988666566556 677765433222 222222222 3568999999999999
Q ss_pred EEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 274 ATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 274 ~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
++++.|.. |+|||+.+++..+.|++. .|++....+...|.|-||++.+.|.++.++|.-++++
T Consensus 612 ~t~cQDrn-irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc--------------- 675 (1080)
T KOG1408|consen 612 VTVCQDRN-IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC--------------- 675 (1080)
T ss_pred EEEecccc-eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh---------------
Confidence 99999999 999999999999999974 3557888999999999999999999999999999985
Q ss_pred CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+++..+|...|+.+.|.+|.++|++++.||.|+||.+..
T Consensus 676 --------------------vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 676 --------------------VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --------------------hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 456778999999999999999999999999999999966
No 91
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1e-26 Score=191.92 Aligned_cols=243 Identities=17% Similarity=0.221 Sum_probs=204.3
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---------cCCceEEEEEecCccEEEe---CC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---------FRSEVRSVKLRRDRIIVVL---EQ 194 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~---d~ 194 (432)
+....+-+..|+|++.++++|+-| |-|.+||..+|+..+.++ +...|.|+.|+.|...+++ ||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvD-----GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVD-----GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCceEeecccc-----ceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 456677788899999999999999 999999999997665443 5788999999999999984 99
Q ss_pred eEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCE
Q 014007 195 KIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQL 272 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~ 272 (432)
.|++|.+++|.+++.+. .|...+.++.|+.|+..++ +++.|.++++.-+.+ +.++.+.+|.+.|+...|.+||++
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL---S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL---SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh---cccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence 99999999999999986 8999999999999998765 345899999999988 456789999999999999999999
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCC
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTL 351 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (432)
+++++.||+ |++|+.++.+|+.+|+......+|.++-.-|. -..++++...++|+|.++...- ++.
T Consensus 363 iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQv-Vrs----------- 429 (508)
T KOG0275|consen 363 IISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQV-VRS----------- 429 (508)
T ss_pred EEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceE-Eee-----------
Confidence 999999999 99999999999999998777778998887774 4578888889999999987543 110
Q ss_pred CCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..-+...+..-+.+.||.|.++.+.++|+.+|-|.+-.
T Consensus 430 ---------------------fsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s 468 (508)
T KOG0275|consen 430 ---------------------FSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS 468 (508)
T ss_pred ---------------------eccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence 111112234455678899999999999999999877643
No 92
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-26 Score=195.44 Aligned_cols=284 Identities=15% Similarity=0.182 Sum_probs=217.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKV 158 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v 158 (432)
.....+.|++|.|+|...+|.+++ |+.++||.++.........+. -...+|.+..|.|+|. .+++++.. ..+
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr-----ky~ 282 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR-----KYL 282 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccc-----eEE
Confidence 333467999999999999888777 777999999765544434442 3567888999999998 77788776 889
Q ss_pred EEEeCCCCceeEEee----cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 159 MIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+.||+.+.+..+.-. ....+....+++++.+++. .|.|.+....+++.+..++. .+.+..++|+.+++.++
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~- 360 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELL- 360 (514)
T ss_pred EEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEE-
Confidence 999998886544322 2345777889999999885 67999999999999988864 56788899999997655
Q ss_pred EeecCCCCcEEEEEccCCceeeeeccCCce--eEEEEcCCCCEEEEEcCCCceEEEEECCC------CceEEEEEeCCCc
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRI--ACFALTQDGQLLATSSTKGTLVRIFNTLD------GTLLQEVRRGADR 303 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i--~~~~~sp~~~~l~~~~~dg~~i~vwd~~~------~~~~~~~~~~~~~ 303 (432)
++ | .+|.|.+||++...+.....-++.| ++++.+++|.+||+|+..|. |.|||..+ .+++..+.. ..
T Consensus 361 ~~-~-~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--Lt 435 (514)
T KOG2055|consen 361 AS-G-GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--LT 435 (514)
T ss_pred EE-c-CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--hh
Confidence 43 2 5799999999996554433334444 56777899999999999999 99999653 355666553 34
Q ss_pred CceEEEEECCCCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 304 AEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
..|++|+|++|++.||.++ .+..+++-.+.+......++ .....-+
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP--------------------------------~~n~~vg 483 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP--------------------------------TSNTKVG 483 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC--------------------------------CCCCccc
Confidence 6899999999999999887 57789998887765221111 0112225
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
.|++++|||.+.+||.|..+|.|.+|.+
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEee
Confidence 6999999999999999999999999987
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.8e-26 Score=186.15 Aligned_cols=287 Identities=14% Similarity=0.204 Sum_probs=235.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
....+|.+.|..++......++.+++ |.+.+||.++++.+. ..+. +|...|.++.|++.+.++++++.| ++
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL--~~Y~-GH~GSVNsikfh~s~~L~lTaSGD-----~t 213 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL--ATYT-GHTGSVNSIKFHNSGLLLLTASGD-----ET 213 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccce--eeec-ccccceeeEEeccccceEEEccCC-----cc
Confidence 56789999999999988778888887 777999999999887 5555 899999999999999999999999 89
Q ss_pred EEEEeC------CC------------------------------C----ceeEEee-cCCceEEEEEecCccEEEe---C
Q 014007 158 VMIWDD------HQ------------------------------S----RCIGELS-FRSEVRSVKLRRDRIIVVL---E 193 (432)
Q Consensus 158 v~iwd~------~~------------------------------~----~~~~~~~-~~~~v~~~~~~~~~~~~~~---d 193 (432)
-.||.. .. + .++..+. |...|.+..|-..|..++. |
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 999951 00 0 0233455 7788888888888877773 9
Q ss_pred CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCC
Q 014007 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ 271 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~ 271 (432)
.+..+||+++++.++.+.+|....+.++-+|..+ ++++ .+.|.+.++||++. ..+..|++|...|+++.|.-+.
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQr--LVvT-sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd- 369 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQR--LVVT-SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD- 369 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcce--EEEE-eccCceeEeccchhhcceeeeecccccceeEEEEecCC-
Confidence 9999999999999999999999998888888765 3333 45899999999996 4567899999999999998766
Q ss_pred EEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007 272 LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT 350 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (432)
.+++|+.|.+ |+|||+++. ..+.++. ...+++.++.+..+..|+.--++..|++||+...+..
T Consensus 370 ~vVSgSDDrT-vKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla------------ 433 (481)
T KOG0300|consen 370 RVVSGSDDRT-VKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA------------ 433 (481)
T ss_pred ceeecCCCce-EEEeeeccccCcceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccc------------
Confidence 4789999999 999999986 4677777 4478999999998889998888999999999876621
Q ss_pred CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC--CEEEEEecCCeEEEEEecCC
Q 014007 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK--NTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~v~iw~~~~~ 412 (432)
.+| ...-.+|...|.+++|..+. .-|++++.|..+.-|+++..
T Consensus 434 -----------RlP--------rtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 -----------RLP--------RTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -----------cCC--------cccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 111 12345788899999998653 35889999999999998754
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=206.99 Aligned_cols=275 Identities=16% Similarity=0.287 Sum_probs=216.1
Q ss_pred EEEEc-CCCCEEEEEcCCc-EEEEEcCCCeeE----EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 90 HISFN-QDHGCFAAGTDHG-FRIYNCDPFREI----FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 90 ~~~~s-~~~~~l~~~~~~~-i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
.+..+ |.+++|.+|+.++ |++|++...... +...++ .|...|.++....++..+++++.| .+|++|+.
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsD-----tTVK~W~~ 102 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSD-----TTVKVWNA 102 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCC-----ceEEEeec
Confidence 44554 4567799988555 999998543332 345565 799999999999999999999999 99999999
Q ss_pred CCC--ceeEEee-cCCceEEEEE-ecCccEEEe---CCeEEEEEcCCCe--eeEE--------Ee-eccCCcceEEEecC
Q 014007 164 HQS--RCIGELS-FRSEVRSVKL-RRDRIIVVL---EQKIFVYNFADLK--LLHQ--------IE-TIANPKGLCAVSQG 225 (432)
Q Consensus 164 ~~~--~~~~~~~-~~~~v~~~~~-~~~~~~~~~---d~~i~i~d~~~~~--~~~~--------~~-~~~~~~~~~~~~~~ 225 (432)
..+ -++.++. |...|.|+++ .++..++++ |+.|.+||++++. .+.. +. ++...+.+++..+.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 887 5777787 9999999999 667777774 8899999999762 2222 22 45567777888887
Q ss_pred CCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
| .+++ +|+..+.+++||-++ +++..+.+|...|.++..++||..+++++.||+ |++||+...+|+.++.. |..
T Consensus 183 ~--t~iv-sGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~v--H~e 256 (735)
T KOG0308|consen 183 G--TIIV-SGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIV--HKE 256 (735)
T ss_pred c--eEEE-ecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEe--ccC
Confidence 7 3444 567899999999998 567778899999999999999999999999999 99999999999999986 667
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
.|+++..+|+=..+++|+.||.|+.=|+++.... ..+-..+.+|.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-----------------------------------tlick~daPv~ 301 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-----------------------------------TLICKEDAPVL 301 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCchhh-----------------------------------eEeecCCCchh
Confidence 8999999999999999999999999999886411 01112233455
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 385 IVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+..+.+.+-+-+++.|+.|+-|...+
T Consensus 302 ~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 302 KLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred hhhhccccCCceeeeccccceecCCcc
Confidence 566555445556677788888877655
No 95
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.5e-25 Score=179.88 Aligned_cols=238 Identities=13% Similarity=0.188 Sum_probs=197.9
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCc---cEEE--eCCeEEEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR---IIVV--LEQKIFVYN 200 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~---~~~~--~d~~i~i~d 200 (432)
.|...+.+++.+ +.++++|+.| .+|+|||+.+...+..+- |.+.|+++.|.+.. .++. .||.|.+|+
T Consensus 41 aH~~sitavAVs--~~~~aSGssD-----etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 41 AHAGSITALAVS--GPYVASGSSD-----ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccceeEEEec--ceeEeccCCC-----CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 688888888764 6899999999 999999999998888877 99999999999876 4444 399999999
Q ss_pred cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC
Q 014007 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 280 (432)
.....++..++.|.+.|+.++++|.++. ++.. +.|+.+++||+-.++......-....+.+.|+|.|.+++.+..++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KL-ALsV--g~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKL-ALSV--GGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCce-EEEE--cCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence 9999999999999999999999999863 4443 369999999998876655444444455699999999999988886
Q ss_pred ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK 360 (432)
Q Consensus 281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
|-+|.+.+.+....+. .+..+.++.|- ++..|++|++|+.|.+||.....+
T Consensus 191 --i~i~q~d~A~v~~~i~---~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~----------------------- 241 (362)
T KOG0294|consen 191 --IDIYQLDNASVFREIE---NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP----------------------- 241 (362)
T ss_pred --EEEEecccHhHhhhhh---ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----------------------
Confidence 8999998888877776 33567788885 567899999999999999998553
Q ss_pred ecccceeecceeeEEEEecCCCceEEEE--ccCCCEEEEEecCCeEEEEEecCCCCC
Q 014007 361 GVLPKYFSSEWSVAQFRLVEGSPYIVAF--GHQKNTVVILGMDGSFYRCQFDPVNGG 415 (432)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~v~iw~~~~~~~~ 415 (432)
...+.+|+.+|-.+.+ .|++.+|++++.||.|++|+++..+.+
T Consensus 242 ------------~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 242 ------------LTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ------------ceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 3457789999999985 457889999999999999999887543
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=2.7e-25 Score=200.61 Aligned_cols=276 Identities=16% Similarity=0.241 Sum_probs=223.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEE-EeeeC-CeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRC-NILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~s~~~d~~~~~ 155 (432)
..+.+|...|..+++.+.. +++.++ |+++++|+-...+......+. ++...+.. ++|.+ +.-.++.|+.|
T Consensus 8 ~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~-~~~g~i~~~i~y~e~~~~~l~~g~~D----- 80 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE-GPKGFIANSICYAESDKGRLVVGGMD----- 80 (745)
T ss_pred EEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-cCcceeeccceeccccCcceEeeccc-----
Confidence 4678899999999887665 566666 666999996555544434554 45555544 66653 44457788888
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
+.|.+|......++..+. |...|.+++...++.++. .|.++++|.+ +++...+++|...|..+..-|.+ .+ +
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~-v 155 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TY-V 155 (745)
T ss_pred ceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cE-E
Confidence 999999999999999999 999999999999998555 3999999985 55667789999999988888887 23 3
Q ss_pred eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
+|+.|..|++|.- ...++++.+|..-|+.+++-+++. ++++++||. |++|++ +|+++.++.+ |..-+++++..
T Consensus 156 -TgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~ 228 (745)
T KOG0301|consen 156 -TGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA 228 (745)
T ss_pred -eccCcceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence 4668999999986 566788999999999999998865 679999999 999998 8888888875 77899999988
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
.++..++++++|++++||+...- .+.+..+...|+++.+-++|
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~e~-------------------------------------~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKDEC-------------------------------------VQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred CCCCeEEEecCCceEEEeecCce-------------------------------------EEEEecCccceEEEEEeeCC
Confidence 88899999999999999998722 33455666689999988776
Q ss_pred CEEEEEecCCeEEEEEecC
Q 014007 393 NTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~~~~ 411 (432)
. |++|+.||.||||..+.
T Consensus 272 D-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 272 D-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred C-EEEeccCceEEEEEecc
Confidence 6 56799999999999874
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=2.1e-25 Score=190.73 Aligned_cols=233 Identities=18% Similarity=0.295 Sum_probs=199.1
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK 205 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~ 205 (432)
..+.++...+....+.+|+.| ..+.++|...++.+..++ |...|+.+.++++...++. |..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d-----~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGED-----KTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCC-----CceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 456666666666788899998 999999999999999999 9999999999999877773 8899999998888
Q ss_pred eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---CceeEEEEcCCCCEEEEEcCCCce
Q 014007 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
.......|..+|+.+..+|.|++++-+ +.|+...+.|++++.......++ -.+++.+|+|||.+|.+|..|+.
T Consensus 295 ~~~~~~~h~~~V~~ls~h~tgeYllsA---s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~- 370 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHPTGEYLLSA---SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGV- 370 (506)
T ss_pred CccccccccccceeeeeccCCcEEEEe---cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCce-
Confidence 888888999999999999999976543 48999999999997765554443 45899999999999999999999
Q ss_pred EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (432)
|+|||+.++..+..|.+ |.++|..++|+.+|-||+++++|+.|++||++..+..+.+
T Consensus 371 vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~--------------------- 427 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI--------------------- 427 (506)
T ss_pred EEEEEcCCccccccCCC--CCCceeEEEeccCceEEEEEecCCeEEEEEehhhccccee---------------------
Confidence 99999999998888886 7799999999999999999999999999999998754432
Q ss_pred ccceeecceeeEEEEecC-CCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 363 LPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
...+ ..|.++.|.+.|.+|+.++.|=.||+++
T Consensus 428 --------------~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 428 --------------QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred --------------eccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 2222 2588999999999999998887777655
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.8e-23 Score=187.88 Aligned_cols=273 Identities=14% Similarity=0.133 Sum_probs=193.9
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
.++++++ ++.|++||+.+++.. ..+. ....+..+.|++++..+ +++..+ +.|++||..+++.+..+...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~--~~~~--~~~~~~~l~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~ 72 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT--RTFP--VGQRPRGITLSKDGKLLYVCASDS-----DTIQVIDLATGEVIGTLPSG 72 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE--EEEE--CCCCCCceEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEeccCC
Confidence 4667766 555999999877654 3444 22335678899998754 566666 89999999999887777644
Q ss_pred CceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 176 SEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
..+..++|+|++..++ . ++.|++||+.+++.+..+... .....++++|++..+++.. .....+.+||..+...
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~--~~~~~~~~~d~~~~~~ 149 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTS--ETTNMAHFIDTKTYEI 149 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEe--cCCCeEEEEeCCCCeE
Confidence 4467889999988665 2 689999999988877766532 3356799999998655432 2334577789887554
Q ss_pred eeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCC---C--cCceEEEEECCCCCEEEEE-eCC
Q 014007 252 KFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA---D--RAEIYSLAFSSNAQWLAVS-SDK 324 (432)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~---~--~~~i~~~~~s~~~~~l~~~-~~d 324 (432)
.........+.+++|+|+|++|+++ ..++. |++||+.+++.+..+.... + ......++|+|++++++++ +.+
T Consensus 150 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 150 VDNVLVDQRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EEEEEcCCCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 3322334456789999999988655 46888 9999999998877765321 1 1124578999999986554 457
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCe
Q 014007 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGS 403 (432)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~ 403 (432)
+.+.+||+++++.. ....+.+.+.+++|+|+|++|++++ .+|.
T Consensus 229 ~~i~v~d~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 272 (300)
T TIGR03866 229 NRVAVVDAKTYEVL------------------------------------DYLLVGQRVWQLAFTPDEKYLLTTNGVSND 272 (300)
T ss_pred CeEEEEECCCCcEE------------------------------------EEEEeCCCcceEEECCCCCEEEEEcCCCCe
Confidence 78999999876621 1112344688999999999998864 5999
Q ss_pred EEEEEecCCCCCcceEee
Q 014007 404 FYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 404 v~iw~~~~~~~~~~~~~~ 421 (432)
|++|+++. ++.+..++
T Consensus 273 i~v~d~~~--~~~~~~~~ 288 (300)
T TIGR03866 273 VSVIDVAA--LKVIKSIK 288 (300)
T ss_pred EEEEECCC--CcEEEEEE
Confidence 99998754 44445444
No 99
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-25 Score=190.82 Aligned_cols=272 Identities=13% Similarity=0.135 Sum_probs=208.5
Q ss_pred CCc-EEEEEcCCCeeEEEeecccCcceeEEEEe-eeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE-EeecCCceEEE
Q 014007 105 DHG-FRIYNCDPFREIFRRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELSFRSEVRSV 181 (432)
Q Consensus 105 ~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~-~~~~~~~v~~~ 181 (432)
|.. +.+||+.++... .+++++......++. ..+ .+++++... ...|.+|.+....... .+..+++|.++
T Consensus 16 d~~~~~~~dl~TGt~~--~~ykg~~~a~~~sl~~l~~--~yllsaq~~----rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSL--LQYKGSYLAQAASLTALNN--EYLLSAQLK----RPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred CCcceeEEecCCCcee--EEecCcccccchhhhhhch--hheeeeccc----CccccccccCchhhhhhhcccccceeee
Confidence 444 899999988766 334322111111221 122 333333321 1689999987765544 33378999999
Q ss_pred EEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC----------
Q 014007 182 KLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------- 248 (432)
Q Consensus 182 ~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---------- 248 (432)
+-+|+|.+++. .+.|++|.+.+|.++..+..|...++++.|+-|+..++ +|+.||.|.+|++..
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii---TgskDg~V~vW~l~~lv~a~~~~~~ 164 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII---TGSKDGAVLVWLLTDLVSADNDHSV 164 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE---ecCCCccEEEEEEEeecccccCCCc
Confidence 99999999985 68999999999999999999999999999999998654 356999999998753
Q ss_pred CceeeeeccCCceeEEEEcCC--CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe
Q 014007 249 KRTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326 (432)
Q Consensus 249 ~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 326 (432)
.....+..|.-+|+.+...+. ..+|++++.|.+ +++||+..+.++.++. .+..+.+++.+|-++.+++|+.+|.
T Consensus 165 ~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 165 KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred cceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEcccccEEEecCCcce
Confidence 445678899999999988764 358999999999 9999999999999888 5588999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc-eeecceeeEEEEecCC--CceEEEEccCCCEEEEEecCCe
Q 014007 327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK-YFSSEWSVAQFRLVEG--SPYIVAFGHQKNTVVILGMDGS 403 (432)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~ 403 (432)
|.+.++........ ++..+ +......+..+.+|.+ .|++++.+-||..|++|+.||.
T Consensus 241 I~~~~~~~~~~~~~--------------------~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~ 300 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSA--------------------GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK 300 (476)
T ss_pred EEeeehhcCCcccc--------------------cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC
Confidence 99999876542110 00000 0112223557888988 9999999999999999999999
Q ss_pred EEEEEecC
Q 014007 404 FYRCQFDP 411 (432)
Q Consensus 404 v~iw~~~~ 411 (432)
|.||++-.
T Consensus 301 VcvWdi~S 308 (476)
T KOG0646|consen 301 VCVWDIYS 308 (476)
T ss_pred EEEEecch
Confidence 99999854
No 100
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=4.7e-24 Score=199.96 Aligned_cols=217 Identities=10% Similarity=0.120 Sum_probs=166.1
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCc--------eeEEee-cCC
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR--------CIGELS-FRS 176 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~--------~~~~~~-~~~ 176 (432)
.|++|+...... ...+. +|...|.++.|+|+ +..+++++.| ++|++||+.++. ++..+. |..
T Consensus 55 vI~L~~~~r~~~--v~~L~-gH~~~V~~lafsP~~~~lLASgS~D-----gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 55 AIRLENQMRKPP--VIKLK-GHTSSILDLQFNPCFSEILASGSED-----LTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred EEEeeecCCCce--EEEEc-CCCCCEEEEEEcCCCCCEEEEEeCC-----CeEEEEECCCCCccccccccceEEeecCCC
Confidence 389998765433 35565 78999999999996 7899999999 999999997642 233455 889
Q ss_pred ceEEEEEecCccEE-E---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-e
Q 014007 177 EVRSVKLRRDRIIV-V---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-T 251 (432)
Q Consensus 177 ~v~~~~~~~~~~~~-~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~ 251 (432)
.|.+++|+|++..+ + .|++|++||+++++.+..+. +...+.+++|+++|..+ ++ ++.|+.|+|||++++. +
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL--at-~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL--SG-TCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE--EE-EecCCEEEEEECCCCcEE
Confidence 99999999988654 3 28999999999988777775 45678899999998854 33 3479999999999854 4
Q ss_pred eeeeccCCceeE-----EEEcCCCCEEEEEcCCC----ceEEEEECCC-CceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 252 KFIMAHDSRIAC-----FALTQDGQLLATSSTKG----TLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 252 ~~~~~~~~~i~~-----~~~sp~~~~l~~~~~dg----~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
..+.+|.+.+.+ ..|++++.+|++++.|+ . |+|||+++ .+++..+....+.+.+......++|.++++|
T Consensus 203 ~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~-VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsG 281 (568)
T PTZ00420 203 SSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE-MKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIG 281 (568)
T ss_pred EEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE-EEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEE
Confidence 567788876543 33568989999988764 7 99999995 5667666543333344444445678999999
Q ss_pred eCCCeEEEEEecCCC
Q 014007 322 SDKGTVHVFNLKVNS 336 (432)
Q Consensus 322 ~~dg~i~iwd~~~~~ 336 (432)
+.|+.|++|++..+.
T Consensus 282 kGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 282 KGDGNCRYYQHSLGS 296 (568)
T ss_pred ECCCeEEEEEccCCc
Confidence 999999999997653
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1e-23 Score=183.84 Aligned_cols=288 Identities=11% Similarity=0.114 Sum_probs=221.8
Q ss_pred cccCCCCCCCeEEEEEcCC--CCEEEEEcCCc---EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQD--HGCFAAGTDHG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDP 151 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~--~~~l~~~~~~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~ 151 (432)
..++..-...|.|++|++- |.+|..-.++. +.+||....... ...+ ..+..+....|+|.. ..+++.+.
T Consensus 147 L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~--~~vk-~sne~v~~a~FHPtd~nliit~Gk-- 221 (626)
T KOG2106|consen 147 LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKL--GPVK-TSNEVVFLATFHPTDPNLIITCGK-- 221 (626)
T ss_pred eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhcc--Ccce-eccceEEEEEeccCCCcEEEEeCC--
Confidence 3455567889999999973 45666555332 899998765543 2222 355677888898854 56666665
Q ss_pred CCCCCeEEEEeCCCCceeEEe---e--cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007 152 QYPLNKVMIWDDHQSRCIGEL---S--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~---~--~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (432)
+.+.+|+.+.+...+.. + .+..|.+++|.++|..+. ++|.|.||+..+.+..+....|.+.|.++++-.
T Consensus 222 ----~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr 297 (626)
T KOG2106|consen 222 ----GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR 297 (626)
T ss_pred ----ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec
Confidence 89999999888655543 3 357799999999999998 589999999988887777779999999999998
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCCce-----------------------------------------eeeeccCCceeE
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------------------KFIMAHDSRIAC 263 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~-----------------------------------------~~~~~~~~~i~~ 263 (432)
+|. +.+ |+.|..|..||-.-++. ....+|......
T Consensus 298 ~Gt---llS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwg 373 (626)
T KOG2106|consen 298 DGT---LLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWG 373 (626)
T ss_pred Ccc---Eee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceee
Confidence 885 333 77999999998432110 223467778889
Q ss_pred EEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (432)
Q Consensus 264 ~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 343 (432)
++.+|+...+++++.|+. +++|+ ..+++.... ...+..++.|+|.| .+|.|...|...+.|.++..
T Consensus 374 la~hps~~q~~T~gqdk~-v~lW~--~~k~~wt~~---~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~------- 439 (626)
T KOG2106|consen 374 LATHPSKNQLLTCGQDKH-VRLWN--DHKLEWTKI---IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD------- 439 (626)
T ss_pred EEcCCChhheeeccCcce-EEEcc--CCceeEEEE---ecCceeEeeccCcc-eEEEeeccceEEEEecccce-------
Confidence 999999999999999999 99998 566665555 34788999999999 99999999999999999865
Q ss_pred CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
+-+++....++++++|+|+|.+||.|+.|+.|+||.++.. |....++..
T Consensus 440 -----------------------------lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~r~~k 488 (626)
T KOG2106|consen 440 -----------------------------LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYSRVGK 488 (626)
T ss_pred -----------------------------eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEEEeee
Confidence 2234444678999999999999999999999999999764 444444433
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=6.3e-25 Score=205.13 Aligned_cols=239 Identities=20% Similarity=0.324 Sum_probs=203.6
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
.+.+|.+.|.+++|..-+.+|++|+ |.++++||+.++++. ..+. +|...+.++...+ ..+++|+.| .+|
T Consensus 244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~--~~l~-gh~stv~~~~~~~--~~~~sgs~D-----~tV 313 (537)
T KOG0274|consen 244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT--HSLQ-GHTSSVRCLTIDP--FLLVSGSRD-----NTV 313 (537)
T ss_pred eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE--EEec-CCCceEEEEEccC--ceEeeccCC-----ceE
Confidence 3889999999999998778899998 777999999999887 6665 7888888877654 466778888 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
++|++.++.++..+. |.++|.++.++ ...++. .|++|++||+.++++++.+.+|...|.++.+... +. +. +|
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~--~~-Sg 388 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NR--LL-SG 388 (537)
T ss_pred EEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ce--EE-ee
Confidence 999999999999999 99999999998 333333 3999999999999999999999999988877665 32 23 46
Q ss_pred CCCCcEEEEEccCC--ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 236 LQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 236 ~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
+.|+.|++||+++. .+..+.+|..-+..+.+ .+++|++++.|++ |++||..++++++++... |...|..+++.
T Consensus 389 s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~- 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG- 463 (537)
T ss_pred eeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC-
Confidence 79999999999997 67788899998877665 6789999999999 999999999999999964 45788888886
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 314 NAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
...+++++.||++++||+++++...
T Consensus 464 -~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 464 -KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred -cceEEEEecCCeeEEEecccCchhh
Confidence 4678888999999999999988543
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=205.05 Aligned_cols=280 Identities=14% Similarity=0.215 Sum_probs=217.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEE--eecc--cCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFR--RDFE--RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~--~~~~--~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~ 159 (432)
.....+|..+++-..+++++...++||.+++...... ..+. ......+.++.|.. ...++++++.. |.|.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n-----G~i~ 113 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN-----GVIS 113 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC-----CcEE
Confidence 3456778888998899999888899998865432211 1111 01223444566653 35678888888 9999
Q ss_pred EEeCCC---CceeEEee-cCCceEEEEEecCccEE-Ee---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 160 IWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIV-VL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 160 iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+||+.. .+.+..|. |...+.++.|++..-.+ ++ ||+|++||++..+...++......++.+.|+|.....+.
T Consensus 114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEE
Confidence 999987 45566676 99999999999865444 43 999999999998888888888889999999998866554
Q ss_pred EeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EEEEEeCCCcCceE
Q 014007 232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIY 307 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~ 307 (432)
+ +.+.|.+++||++. .....+.+|.++|.|+.|+|++.+||||+.|+. |+|||+.+++. +.++. ...++.
T Consensus 194 s--~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tiapv~ 267 (839)
T KOG0269|consen 194 S--IHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIAPVG 267 (839)
T ss_pred E--ecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecceee
Confidence 3 46889999999998 445667899999999999999999999999999 99999976543 44555 347899
Q ss_pred EEEECCCCCE-EEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 308 SLAFSSNAQW-LAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 308 ~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
.+.|-|..++ ||+++ .|-.|+|||++..- +| .+++..|...++
T Consensus 268 rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY--------------------------IP--------~~t~~eH~~~vt 313 (839)
T KOG0269|consen 268 RVKWRPARSYHLATCSMVVDTSVHVWDVRRPY--------------------------IP--------YATFLEHTDSVT 313 (839)
T ss_pred eeeeccCccchhhhhhccccceEEEEeecccc--------------------------cc--------ceeeeccCcccc
Confidence 9999998765 55555 68899999998763 33 667888999999
Q ss_pred EEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007 385 IVAFGH-QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 385 ~~~~s~-~~~~l~~~~~dg~v~iw~~ 409 (432)
.++|-. |-..|.+++.||.|..-.+
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhh
Confidence 999976 5667889999998876444
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.9e-25 Score=177.38 Aligned_cols=245 Identities=16% Similarity=0.211 Sum_probs=198.4
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---ceeEEee-cCCceEEEEEec--CccEEEe---CCeEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIF 197 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i~ 197 (432)
.|...|.+...+--+..|++++.| ++|+|+.++.. +.+.++. |.++|..++|.. -|.++++ ||.|.
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD-----~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSD-----GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCC-----ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 577777777777778899999999 99999998765 4567777 999999999986 6888884 99999
Q ss_pred EEEcCCCe--eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC----ceeeeeccCCceeEEEEcCC--
Q 014007 198 VYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQD-- 269 (432)
Q Consensus 198 i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~sp~-- 269 (432)
||.-..++ .......|...+++++|.|++-.+.|+| ++.||.|.|.+.+.. ..+....|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~ 162 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASA 162 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEE-eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCC
Confidence 99977763 3445567889999999999999998887 458999999998874 23456789999999999985
Q ss_pred -C-----------CEEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCC----CEEEEEeCCCeEEEEE
Q 014007 270 -G-----------QLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVHVFN 331 (432)
Q Consensus 270 -~-----------~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~iwd 331 (432)
| +.|++|+.|.. |+||+..+++ .-.++. .|...|+.++|.|.- .+||+++.||+|.||-
T Consensus 163 ~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt 239 (299)
T KOG1332|consen 163 PGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT 239 (299)
T ss_pred CccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCceeeEEecCCCcEEEEE
Confidence 4 57999999999 9999988763 233455 377999999999964 4899999999999998
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+... +.|....++.....++.+.||..|+.|++++.|+.|.+|.=+.
T Consensus 240 ~~~e~--------------------------------e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEY--------------------------------EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCcc--------------------------------CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 87322 1222333444456799999999999999999999999998654
Q ss_pred C
Q 014007 412 V 412 (432)
Q Consensus 412 ~ 412 (432)
+
T Consensus 288 ~ 288 (299)
T KOG1332|consen 288 D 288 (299)
T ss_pred C
Confidence 3
No 105
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.6e-24 Score=176.64 Aligned_cols=294 Identities=13% Similarity=0.168 Sum_probs=222.5
Q ss_pred CCCcccCCCCCCCeEEEEEcC-CCCEEEEEcCC-cEEEEEcCCCee------------EEEeecccCcceeEEEEeeeC-
Q 014007 75 SPAESTSSSPPPTLLHISFNQ-DHGCFAAGTDH-GFRIYNCDPFRE------------IFRRDFERGGGIGVVEMLFRC- 139 (432)
Q Consensus 75 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~-~i~iw~~~~~~~------------~~~~~~~~~~~~~v~~~~~~~- 139 (432)
.....+...|.+.|+++...+ .|+++++|+.+ .|.+||++.... ...+.-+.+|...|.++.|-|
T Consensus 33 n~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~ 112 (397)
T KOG4283|consen 33 NNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI 112 (397)
T ss_pred cCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence 345567788999999999987 68899998844 499999964331 111222356788888888876
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc---cEEEe---CCeEEEEEcCCCeeeEEEeec
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVVL---EQKIFVYNFADLKLLHQIETI 213 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---d~~i~i~d~~~~~~~~~~~~~ 213 (432)
|.-.+.+++-| .++++||..+.+....|+.++.|++-+++|-. .+++. +-.|++.|+..|..-+.+.+|
T Consensus 113 DtGmFtssSFD-----htlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 113 DTGMFTSSSFD-----HTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred cCceeeccccc-----ceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc
Confidence 56677888888 99999999999999999999999999999842 34442 668999999999999999999
Q ss_pred cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cceee--------------eeccCCceeEEEEcCCCCEEEEEc
Q 014007 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKF--------------IMAHDSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~--------------~~~~~~~i~~~~~sp~~~~l~~~~ 277 (432)
.+.|..+.|+|..+.+ ++ +|+.||.|++||++. +.... -.+|.+.+..++|+.+|.++++++
T Consensus 188 r~~vlaV~Wsp~~e~v-La-tgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWV-LA-TGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred cCceEEEEeccCceeE-EE-ecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 9999999999988754 34 577999999999986 22222 235778899999999999999999
Q ss_pred CCCceEEEEECCCCceEE-EEEeCCCcC---ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 278 TKGTLVRIFNTLDGTLLQ-EVRRGADRA---EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~~~-~~~~~~~~~---~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
.|.. +++|+..+|+... .+..-.|.. .-..+. +-+...++---.++.+.++.+-.+..
T Consensus 266 td~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~---------------- 327 (397)
T KOG4283|consen 266 TDDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF---------------- 327 (397)
T ss_pred Cccc-eEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE----------------
Confidence 9999 9999998875421 111101111 111122 33344444444568888888877762
Q ss_pred CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+..++.|-..|.+.+|.|+=+.+.+|..|+.++.|...+.
T Consensus 328 -------------------ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p~l~ 367 (397)
T KOG4283|consen 328 -------------------VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSPALK 367 (397)
T ss_pred -------------------EEeeecccceeeEEeecCchhhhhccccCCcccccccccc
Confidence 4456777778999999999999999999999999987443
No 106
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=8.4e-25 Score=184.11 Aligned_cols=238 Identities=12% Similarity=0.137 Sum_probs=193.2
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEec-Ccc---EEEe--CCeEEEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRI---IVVL--EQKIFVYN 200 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~---~~~~--d~~i~i~d 200 (432)
|...|.++.-. ...+++|+.| |.+++|| ..|+.+..+. |.++|.+++|.. +.. ++.+ |.++++|.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYD-----g~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~ 175 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYD-----GTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK 175 (423)
T ss_pred chhhhhhhccc--CceEEEeecC-----CeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence 66666666555 6789999999 9999999 5688888887 999999888753 322 3432 88999999
Q ss_pred cCCCee----eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--------------------------Cc
Q 014007 201 FADLKL----LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--------------------------KR 250 (432)
Q Consensus 201 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--------------------------~~ 250 (432)
++.++. ++.-++|...|.++...+++..++ +|+.|..|.+|+... .+
T Consensus 176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~---SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFC---SGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred ecCchhhhhHHhHhcccccceeEEEecCCCCeEE---eecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 887643 333458999999999999987543 567999999999322 01
Q ss_pred eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 251 TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
+..+.+|..+|.++.|++ ...+++++.|.+ |+.||+.++++.-++.. ...+.++..+|..++|++|+.|..+++|
T Consensus 253 ~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHT-Ik~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 253 LVTLEGHTEPVSSVVWSD-ATVIYSVSWDHT-IKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred eEEecccccceeeEEEcC-CCceEeecccce-EEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeec
Confidence 345779999999999998 567899999999 99999999999988884 4789999999999999999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007 331 NLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~ 409 (432)
|.+++... -...++.+|.+.|.++.|+| +...|++|+.||++++||+
T Consensus 328 DPR~~~gs--------------------------------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 328 DPRTGDGS--------------------------------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred CCCCCCCc--------------------------------eeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 99987511 01346889999999999999 5557889999999999999
Q ss_pred cCCC
Q 014007 410 DPVN 413 (432)
Q Consensus 410 ~~~~ 413 (432)
....
T Consensus 376 RS~k 379 (423)
T KOG0313|consen 376 RSTK 379 (423)
T ss_pred ccCC
Confidence 6643
No 107
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=5.9e-25 Score=189.37 Aligned_cols=251 Identities=13% Similarity=0.167 Sum_probs=193.7
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCE-EEEEcCCc-EEEEEcCCCeeE--------EEeecccCcceeEEEEeeeCCe-EEE
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGC-FAAGTDHG-FRIYNCDPFREI--------FRRDFERGGGIGVVEMLFRCNI-LAL 144 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~~~-i~iw~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~~~ 144 (432)
........|.+.|+.+++.|.... +|+++.++ |.|||....... ....+. +|...-.+++|++.. -.+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeE
Confidence 344566779999999999998765 55556666 999998532221 112454 566667778888753 567
Q ss_pred ecCCCCCCCCCCeEEEEeCCCCc-------eeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcC--CCeeeEEE
Q 014007 145 VGGGPDPQYPLNKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA--DLKLLHQI 210 (432)
Q Consensus 145 ~s~~~d~~~~~~~v~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~--~~~~~~~~ 210 (432)
++++.| ++|++||+.... ....+. |...|..++|++-...++ + |+.+.|||++ +.++.+..
T Consensus 194 ls~~~d-----~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 194 LSGSDD-----HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred eeccCC-----CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 788888 999999987542 233445 899999999998544333 2 8899999999 56777788
Q ss_pred eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEE
Q 014007 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd 287 (432)
..|...+.+++|+|.+..+ +|+ |+.|++|.+||+++ .++..+.+|...|.+|.|+|. ...||+++.|+. +.|||
T Consensus 269 ~ah~~~vn~~~fnp~~~~i-lAT-~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r-l~vWD 345 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFI-LAT-GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR-LNVWD 345 (422)
T ss_pred cccCCceeEEEeCCCCCce-EEe-ccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc-EEEEe
Confidence 8999999999999998754 454 66899999999998 667889999999999999995 568899999999 99999
Q ss_pred CCCCc------------eEEEEEeCCCcCceEEEEECCCCCE-EEEEeCCCeEEEEEecCC
Q 014007 288 TLDGT------------LLQEVRRGADRAEIYSLAFSSNAQW-LAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 288 ~~~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~ 335 (432)
+..-. .-..|.-++|...|..+.|+|+..+ |++.++|+.+.||+....
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 86421 1112444458899999999998775 667889999999998743
No 108
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=9.1e-25 Score=179.68 Aligned_cols=275 Identities=14% Similarity=0.198 Sum_probs=204.7
Q ss_pred eEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 88 LLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
-.|+.||+.|.+||+|..+| |.|||+.+.... +.+. +|..+|.+++|++++..|++++.| ..|.+||+..|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--r~ls-aH~~pi~sl~WS~dgr~LltsS~D-----~si~lwDl~~g 97 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--RMLS-AHVRPITSLCWSRDGRKLLTSSRD-----WSIKLWDLLKG 97 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--hhhh-ccccceeEEEecCCCCEeeeecCC-----ceeEEEeccCC
Confidence 78999999999999999666 999999988743 5554 899999999999999999999999 99999999999
Q ss_pred ceeEEeecCCceEEEEEecC--ccEEE--eCCeEEEEEcCCCeeeEEEee-ccC----CcceEEEecCCCcEEEEeecCC
Q 014007 167 RCIGELSFRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADLKLLHQIET-IAN----PKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
.+++.+.+.++|+...|+|. .+.++ .+..-.+.++..++.. .+.. ... ......|.+.|++++ +|..
T Consensus 98 s~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIi---tGts 173 (405)
T KOG1273|consen 98 SPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYII---TGTS 173 (405)
T ss_pred CceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEE---EecC
Confidence 99999999999999999984 44444 2554555555442211 1111 011 112235777777655 3567
Q ss_pred CCcEEEEEccCCc-eeeeeccC-CceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-------c--eEEEEEeCCCcCce
Q 014007 238 KGQVRVEHYASKR-TKFIMAHD-SRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-------T--LLQEVRRGADRAEI 306 (432)
Q Consensus 238 d~~i~i~d~~~~~-~~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-------~--~~~~~~~~~~~~~i 306 (432)
.|.+.++|..+.+ +..++-.. ..|..+.++..|++|++-+.|+. ||.|+++.- + ..+++..-.++..-
T Consensus 174 KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv-IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 174 KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV-IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce-EEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 8999999998843 44444444 78999999999999999999999 999998631 1 11222211122455
Q ss_pred EEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCce
Q 014007 307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPY 384 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 384 (432)
.+++||.+|.|++.++ ....++||.-..|..++ .+.+.. ....
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVK-----------------------------------ILhG~kgE~l~ 297 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVK-----------------------------------ILHGTKGEELL 297 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceee-----------------------------------eecCCchhhee
Confidence 7889999999998887 45679999999887433 344444 3466
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 385 IVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+.|+|-...+++. ..|.|+||....
T Consensus 298 DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 298 DVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred ecccccceeeeeec-cCCceEEEEeec
Confidence 78999987888777 789999998744
No 109
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=5.8e-24 Score=171.08 Aligned_cols=231 Identities=15% Similarity=0.170 Sum_probs=196.4
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
+|..+++.+.|+.+|.+|.+++.| .+..+|-..+|+.+.++. |.+.|+++.++.+...+++ |.++++||++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD-----~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKD-----STPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCC-----CCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 799999999999999999999999 999999988999999999 9999999999999888883 8999999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeec--CCCCcEEEEEccC--------CceeeeeccCCceeEEEEcCCCCE
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDGQL 272 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~sp~~~~ 272 (432)
+|+++..++. ..++..+.|+++|+.+++.+-- +..+.|.++|++. .+...+..+.+.++.+-|.|-+++
T Consensus 83 tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 83 TGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred CCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 9999999864 5678899999999866544310 2457899999984 235677788899999999999999
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
|++|.+||. |.+||+++|+.+..-.. .|...|+.|++++|..++++++.|.+-++||+.+...++.+
T Consensus 162 ii~Ghe~G~-is~~da~~g~~~v~s~~-~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty----------- 228 (327)
T KOG0643|consen 162 IIAGHEDGS-ISIYDARTGKELVDSDE-EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY----------- 228 (327)
T ss_pred EEEecCCCc-EEEEEcccCceeeechh-hhccccccccccCCcceEEecccCccceeeeccceeeEEEe-----------
Confidence 999999999 99999999866544432 36689999999999999999999999999999998744322
Q ss_pred CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 401 (432)
..+.+|++.+++|-..+++.|+..
T Consensus 229 -------------------------~te~PvN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 229 -------------------------TTERPVNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred -------------------------eecccccceecccccceEEecCCc
Confidence 123479999999987777776654
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=7.1e-25 Score=191.46 Aligned_cols=245 Identities=16% Similarity=0.217 Sum_probs=179.3
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc----eeEEee--cCCceEEEEEecCccEEE-e--
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS--FRSEVRSVKLRRDRIIVV-L-- 192 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~--~~~~v~~~~~~~~~~~~~-~-- 192 (432)
..++ +|...|.++++.+.|..|++|+.| .+|++||+.... ..+.+. ....|++++|++.|..++ .
T Consensus 161 i~l~-hgtk~Vsal~~Dp~GaR~~sGs~D-----y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 161 IQLK-HGTKIVSALAVDPSGARFVSGSLD-----YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred Eecc-CCceEEEEeeecCCCceeeecccc-----ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 4555 788899999999999999999999 999999987542 223333 467899999999876555 2
Q ss_pred CCeEEEEEcCCCeeeEE------------EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeee---
Q 014007 193 EQKIFVYNFADLKLLHQ------------IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIM--- 255 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~--- 255 (432)
....+++|-...+.... -++|...+++.+|+|..+..++.| +.||++++||+... ....+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeecc
Confidence 55788998433222222 235566778899999999888776 58999999999872 223332
Q ss_pred --ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcC--ceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 256 --AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRA--EIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 256 --~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
+..-+++.++|+++|+++|+|+.||. |.+|+..... ....+.. .|.. .|++|.||+||++|++-+.|+++++
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCc-eeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccCCCceee
Confidence 23446899999999999999999999 9999975542 2233332 3544 8999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec------CCe
Q 014007 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM------DGS 403 (432)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~ 403 (432)
||++..+.... ...+ ++.+ -.-+.++|||+.++|++|+. .|.
T Consensus 391 WDLrq~kkpL~-----------------~~tg-L~t~--------------~~~tdc~FSPd~kli~TGtS~~~~~~~g~ 438 (641)
T KOG0772|consen 391 WDLRQFKKPLN-----------------VRTG-LPTP--------------FPGTDCCFSPDDKLILTGTSAPNGMTAGT 438 (641)
T ss_pred eeccccccchh-----------------hhcC-CCcc--------------CCCCccccCCCceEEEecccccCCCCCce
Confidence 99998763210 0000 1100 12356899999999999876 466
Q ss_pred EEEEE
Q 014007 404 FYRCQ 408 (432)
Q Consensus 404 v~iw~ 408 (432)
+++|+
T Consensus 439 L~f~d 443 (641)
T KOG0772|consen 439 LFFFD 443 (641)
T ss_pred EEEEe
Confidence 76654
No 111
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.8e-24 Score=196.70 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=217.9
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
....|...-+.|+|.|+|.+|.+++.++ |++|+........ ..+. .+...+.+++...+ .|++++.+ ++|
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-~ti~-~~g~~v~~ia~~s~--~f~~~s~~-----~tv 78 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-ETID-ISGELVSSIACYSN--HFLTGSEQ-----NTV 78 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-chhh-ccCceeEEEeeccc--ceEEeecc-----ceE
Confidence 3467999999999999999988887555 9999976553221 2221 25666666665544 78888888 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
.+|.+..++.-..+. +.-++.+++++.+|.+++. |-.|++.+..+......+++|..+|.++.++|.++.+++++
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss- 157 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS- 157 (933)
T ss_pred EEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe-
Confidence 999999887765555 7889999999999999984 56899999999999999999999999999999998555443
Q ss_pred cCCCCcEEEEEccCCceee-ee-------c-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007 235 GLQKGQVRVEHYASKRTKF-IM-------A-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~-~~-------~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
.||.|++||+..+.+.. +. . ....+..++|+|+|..|+....|+. |++|+..++.....+....+...
T Consensus 158 --~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 158 --CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSK 234 (933)
T ss_pred --cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccc
Confidence 79999999999855422 11 1 1445778999999888888888999 99999999999999987666667
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
+..++|+|+|+|||+++.||.|.|||+++.+. ......|.+
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---------------------------------------~~~~~~Vc~ 275 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQILVWNVDTHER---------------------------------------HEFKRAVCC 275 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCcEEEEecccchh---------------------------------------ccccceeEE
Confidence 99999999999999999999999999997431 111235888
Q ss_pred EEEccCCCEEEEEecCCeEEEE
Q 014007 386 VAFGHQKNTVVILGMDGSFYRC 407 (432)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~v~iw 407 (432)
++|.|+++.+-.-...|...+|
T Consensus 276 ~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 276 EAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EecCCCCCeeEEEeeccccccC
Confidence 8999888877666666655543
No 112
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=3.5e-24 Score=193.42 Aligned_cols=293 Identities=13% Similarity=0.163 Sum_probs=220.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
.++.+|.+.|+++.|+|++..|.+++ |+++.+|.-+....+..-... ++.........|++++..+++.+..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~--- 337 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRT--- 337 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEeccc---
Confidence 45679999999999999996555555 888999987655433332222 2445668899999999999999988
Q ss_pred CCCeEEEEeCCCC-c--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC-C---eeeEEEeeccCCcceEEE
Q 014007 154 PLNKVMIWDDHQS-R--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-L---KLLHQIETIANPKGLCAV 222 (432)
Q Consensus 154 ~~~~v~iwd~~~~-~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~-~---~~~~~~~~~~~~~~~~~~ 222 (432)
|..++|-.++. . ....+. |-..|.+++|+|.|.++.+ |.+-|+|-.-. . ..+..-+.|.....++++
T Consensus 338 --Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 338 --GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred --CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 99999983332 1 222233 8899999999999999884 88888886431 1 112222456666777777
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccC----------C-------------------------------------------
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYAS----------K------------------------------------------- 249 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~----------~------------------------------------------- 249 (432)
-+. +..+ + +|.....+++|+... +
T Consensus 416 vn~-~~~F-V-SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~ 492 (764)
T KOG1063|consen 416 VNE-DLQF-V-SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETP 492 (764)
T ss_pred ccC-Ccee-e-ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecc
Confidence 664 2222 3 344666777776431 0
Q ss_pred ------------------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCc----eEEEEECCCCceEEEEEeCC
Q 014007 250 ------------------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGA 301 (432)
Q Consensus 250 ------------------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~----~i~vwd~~~~~~~~~~~~~~ 301 (432)
++..+.+|...|++++.+|+|+++|+++.... .|++|+..+....+.+..
T Consensus 493 ~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-- 570 (764)
T KOG1063|consen 493 LAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-- 570 (764)
T ss_pred cccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--
Confidence 01334578889999999999999999887542 299999999888888885
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
|.-.|+.++|||||++|++.+.|+++.+|........ ...++..+.|..
T Consensus 571 HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-------------------------------e~~fa~~k~HtR 619 (764)
T KOG1063|consen 571 HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-------------------------------EFRFACLKAHTR 619 (764)
T ss_pred cceEEEEEEECCCCcEEEEeecCceEEeeeeecccch-------------------------------hhhhccccccce
Confidence 6689999999999999999999999999999655411 112556788999
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
.|+++.|+|++.++++++.|.+|.+|.....
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999999999998654
No 113
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.8e-25 Score=197.58 Aligned_cols=229 Identities=16% Similarity=0.215 Sum_probs=193.2
Q ss_pred CCeEEEecCCCCCCCCCCeEEEEeCCCCc------eeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCC--ee
Q 014007 139 CNILALVGGGPDPQYPLNKVMIWDDHQSR------CIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL--KL 206 (432)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~------~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~--~~ 206 (432)
+++++|.+|++| |.|++|++.... .+..++ |...|+.+....+++.++ .|-+|++|+...+ -+
T Consensus 35 ~~~ryLfTgGRD-----g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRD-----GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCceEEecCCC-----ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence 567789999999 999999986542 356677 899999999988886666 3889999998876 57
Q ss_pred eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----------eeee-ccCCceeEEEEcCCCCEEE
Q 014007 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------KFIM-AHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----------~~~~-~~~~~i~~~~~sp~~~~l~ 274 (432)
+.++..|.+-|.++++....+ .+++ +|+-|+.|.+||+..+.. ..+. ++...|++++.++.|..++
T Consensus 110 ~stir~H~DYVkcla~~ak~~-~lva-SgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~iv 187 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNN-ELVA-SGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIV 187 (735)
T ss_pred HhhhhcccchheeeeecccCc-eeEE-ecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEE
Confidence 788889999999998843322 2445 466999999999996421 1223 7888999999999999999
Q ss_pred EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
+|+..+. |++||.++++.+..+.+ |...|..+..+.||+.+++++.||+|++||+...++
T Consensus 188 sGgtek~-lr~wDprt~~kimkLrG--HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC----------------- 247 (735)
T KOG0308|consen 188 SGGTEKD-LRLWDPRTCKKIMKLRG--HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC----------------- 247 (735)
T ss_pred ecCcccc-eEEeccccccceeeeec--cccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----------------
Confidence 9999999 99999999999999995 779999999999999999999999999999988764
Q ss_pred CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
++++..|...|+++..+|+=..+++|+.||.|+.=++...
T Consensus 248 ------------------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 248 ------------------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ------------------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 5678899999999999999999999999999998666543
No 114
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.7e-24 Score=190.19 Aligned_cols=295 Identities=16% Similarity=0.173 Sum_probs=224.4
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE--EEecCCCC--
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGGPD-- 150 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d-- 150 (432)
....+..+|.+.|.||...|.|.+|++|+++| |+||.+.++.++....+ ...|.+++|+|... .|+.+...
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~----d~~I~~vaw~P~~~~~vLAvA~~~~~ 466 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF----DSEIRSVAWNPLSDLCVLAVAVGECV 466 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee----cceeEEEEecCCCCceeEEEEecCce
Confidence 34567889999999999999999999999666 99999999999865554 35788888887532 22222111
Q ss_pred -------------------------CCCCCCeEEEEeCCCCc-----eeEEeecCCceEEEEEecCccEEEe------CC
Q 014007 151 -------------------------PQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRRDRIIVVL------EQ 194 (432)
Q Consensus 151 -------------------------~~~~~~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~------d~ 194 (432)
..++++.+..|.-...+ .-..+.|...|..+.|+..|.|+++ ..
T Consensus 467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~ 546 (733)
T KOG0650|consen 467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK 546 (733)
T ss_pred EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence 01234566777643211 1234558999999999999999994 35
Q ss_pred eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEE
Q 014007 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLL 273 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l 273 (432)
.|.|+++...+...-++-..+.+..+.|+|....+++++ ...|++||+.... ++.+......|..++.+|.|..|
T Consensus 547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 799999988766666655667788999999988887664 5899999998744 34556667789999999999999
Q ss_pred EEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 274 ATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 274 ~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
+.|+.|+. +..||+.-. +..+++.. |...+++++|++.-.+|++|+.||++.||.-.-..-+...+
T Consensus 623 i~gs~d~k-~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp---------- 689 (733)
T KOG0650|consen 623 ILGSYDKK-MCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP---------- 689 (733)
T ss_pred EEecCCCe-eEEEEcccCcchhHHhhh--hhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC----------
Confidence 99999999 999999755 45556663 77899999999999999999999999999765443211100
Q ss_pred CCCceeEeecccceeecceeeEEEEecCCC----ceEEEEccCCCEEEEEecCCeEEEE
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGS----PYIVAFGHQKNTVVILGMDGSFYRC 407 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~v~iw 407 (432)
.++| +..+++|... |..+.|+|...+|++++.||+|++|
T Consensus 690 --------liVP--------lK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 690 --------LIVP--------LKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred --------ceEe--------eeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 0111 4456677643 8888999999999999999999998
No 115
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=5.5e-24 Score=183.46 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=191.4
Q ss_pred CcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCce----------eEEee-cCCceEEEEEecC--ccEEE-
Q 014007 127 GGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRC----------IGELS-FRSEVRSVKLRRD--RIIVV- 191 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~----------~~~~~-~~~~v~~~~~~~~--~~~~~- 191 (432)
.|...|..+.+.|+.. ++++.... +.|+|||..+..- -..+. |...-++++|++. |.++.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~-----~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSS-----GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCC-----CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3778888888888654 55556666 8999999764311 11444 7777888999985 44554
Q ss_pred -eCCeEEEEEcCCCe-------eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---CceeeeeccCCc
Q 014007 192 -LEQKIFVYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSR 260 (432)
Q Consensus 192 -~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~ 260 (432)
.|++|.+||+.... +...+..|...|..++|++-...++..+ | .|+.+.|||+++ +......+|.+.
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv-~-dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV-G-DDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee-c-CCCeEEEEEcCCCCCCCcccccccCCc
Confidence 28899999997532 3456788999999999999988776443 4 899999999995 334557799999
Q ss_pred eeEEEEcC-CCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCC
Q 014007 261 IACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 261 i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
|.|++|+| ++.+||+|+.|++ |++||+|+. +++.++.. |...|.++.|||.. ..||+++.|+++.|||+..-..
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~--H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEG--HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccC--CCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 99999999 6678899999999 999999985 46677774 77999999999964 5788889999999999986543
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE-EEEEecCCeEEEEEec
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT-VVILGMDGSFYRCQFD 410 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~v~iw~~~ 410 (432)
....+ . .......-+..-.+|...|+.+.|+|+..+ |++++.|+.+.||++.
T Consensus 352 eq~~e-------d--------------a~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 352 EQSPE-------D--------------AEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccChh-------h--------------hccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 22100 0 000111124456789999999999997665 6788999999999985
No 116
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-22 Score=187.26 Aligned_cols=313 Identities=14% Similarity=0.172 Sum_probs=217.9
Q ss_pred CeEEEEEcCCCC--EEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 87 TLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 87 ~v~~~~~s~~~~--~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
.|+++ ++|..- -++.|+..| ++||++.+++.+ .+++ +....|+++.-+|-...++.|..+ |+|.++++
T Consensus 161 ~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v--~~f~-~~~s~IT~ieqsPaLDVVaiG~~~-----G~ViifNl 231 (910)
T KOG1539|consen 161 FITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVV--YTFQ-EFFSRITAIEQSPALDVVAIGLEN-----GTVIIFNL 231 (910)
T ss_pred ceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEE--EEec-ccccceeEeccCCcceEEEEeccC-----ceEEEEEc
Confidence 37775 467542 366676555 999999999888 5565 677999999999999999999998 99999999
Q ss_pred CCCceeEEeecC-CceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCC
Q 014007 164 HQSRCIGELSFR-SEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 164 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
+.++.+.++++. +.|++++|..||..+.+ .|.+.+||++..+.+..++ .|.+.+....+-+... +++++| .
T Consensus 232 K~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep--Vl~ta~-~ 308 (910)
T KOG1539|consen 232 KFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP--VLVTAG-A 308 (910)
T ss_pred ccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCc--eEeecc-C
Confidence 999999999975 99999999999987663 6889999998877665554 4444444444433322 111111 2
Q ss_pred CCcEEEE-------------------------------------------------------------------------
Q 014007 238 KGQVRVE------------------------------------------------------------------------- 244 (432)
Q Consensus 238 d~~i~i~------------------------------------------------------------------------- 244 (432)
|+.+++|
T Consensus 309 DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~ 388 (910)
T KOG1539|consen 309 DNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVF 388 (910)
T ss_pred CCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccccc
Confidence 3333332
Q ss_pred ---------------------------------------EccCCce-eeeecc------CCceeEEEEcCCCCEEEEEcC
Q 014007 245 ---------------------------------------HYASKRT-KFIMAH------DSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 245 ---------------------------------------d~~~~~~-~~~~~~------~~~i~~~~~sp~~~~l~~~~~ 278 (432)
+++.+.. .....+ ...+++++.++.|++.+.|+.
T Consensus 389 ~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S 468 (910)
T KOG1539|consen 389 STEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS 468 (910)
T ss_pred chhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc
Confidence 2111111 001111 246889999999999999999
Q ss_pred CCceEEEEECCCCceEEEEE-eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCC-CCCCC-CCCCCC
Q 014007 279 KGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR-STSDP-TLPTSS 355 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~-~~~~~~ 355 (432)
.|. |.+|++.+|-....|. ...|..+|++++...-++.+++++.+|.+++||..+...+...... +.... ....+.
T Consensus 469 ~G~-Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~ 547 (910)
T KOG1539|consen 469 KGT-IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD 547 (910)
T ss_pred CCe-EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhh
Confidence 999 9999999998888883 2347899999999988999999999999999999987744332210 00000 000000
Q ss_pred ceeE--ee-ccccee-ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 356 LSFI--KG-VLPKYF-SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 356 ~~~~--~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+-.+ .. .+..+. ....-...+.+|.+.|++++|||||++|++++.|++|++||+...
T Consensus 548 l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 548 LLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred hhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence 0000 00 000000 011113457899999999999999999999999999999998653
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-24 Score=172.53 Aligned_cols=248 Identities=16% Similarity=0.182 Sum_probs=192.9
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY 153 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~ 153 (432)
+.+-..|.+.|..+...--|+.||+++ |+.|+|+.+.+... ....++. +|..++..++|.. -|.+|++++.|
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYD--- 79 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYD--- 79 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecC---
Confidence 456678999999999999999999998 66699999976654 5557776 8999999999865 68999999999
Q ss_pred CCCeEEEEeCCCCceeE--Eee-cCCceEEEEEecCc--cEEE---eCCeEEEEEcCCC---eeeEEEeeccCCcceEEE
Q 014007 154 PLNKVMIWDDHQSRCIG--ELS-FRSEVRSVKLRRDR--IIVV---LEQKIFVYNFADL---KLLHQIETIANPKGLCAV 222 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~--~~~-~~~~v~~~~~~~~~--~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~ 222 (432)
|.|.||.-..++-.+ +.. |...|++++|.|.+ ..|+ +||.|.|.+.+.. ...+....|.-.++.++|
T Consensus 80 --gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVsw 157 (299)
T KOG1332|consen 80 --GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSW 157 (299)
T ss_pred --ceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeee
Confidence 999999977774333 333 89999999999964 4444 4999999998764 222334567778889999
Q ss_pred ecC---CC---------cEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcCCC----CEEEEEcCCCceE
Q 014007 223 SQG---VG---------SLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDG----QLLATSSTKGTLV 283 (432)
Q Consensus 223 ~~~---~~---------~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~~i 283 (432)
.|. |. -.-+++ |+.|..|+||+.+. ...+++.+|.+.|+.++|.|.- .+||+++.||+ |
T Consensus 158 apa~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~-v 235 (299)
T KOG1332|consen 158 APASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT-V 235 (299)
T ss_pred cCcCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc-E
Confidence 886 31 012454 55899999999998 4445688999999999999953 57999999999 9
Q ss_pred EEEECCCC--ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 284 RIFNTLDG--TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 284 ~vwd~~~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.||-.+.. .-..++.. ..+..+..+.||..|..|+.++.|+.|.+|.-..
T Consensus 236 iIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 99976521 11111111 1346799999999999999999999999997654
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-23 Score=171.12 Aligned_cols=244 Identities=16% Similarity=0.158 Sum_probs=190.5
Q ss_pred cCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC-CceeEE--eecCCceEEEEEecCccEEEe---CCeEEE
Q 014007 126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGE--LSFRSEVRSVKLRRDRIIVVL---EQKIFV 198 (432)
Q Consensus 126 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~--~~~~~~v~~~~~~~~~~~~~~---d~~i~i 198 (432)
......|.+++|+| ...+++.++.| ++||+|+++. |..+.. ..|.++|.+++|+.||..+++ |+.+++
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD-----~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWD-----GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred CCcccchheeEeccccCceEEecccC-----CceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 34678899999999 55667788899 9999999987 444433 238999999999999988873 999999
Q ss_pred EEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007 199 YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
||+.+++ ...+..|..++..+.|-+...+..+++ |+.|.+|+.||.+...........+.++++.. ...+++++..
T Consensus 99 wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~T-GSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata 174 (347)
T KOG0647|consen 99 WDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVT-GSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATA 174 (347)
T ss_pred EEccCCC-eeeeeecccceeEEEEecCCCcceeEe-cccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEec
Confidence 9999984 566778999999999998887666664 78999999999998655444455677777765 3446788888
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
++. |.+|+++++...........+-.+.+++..+|....|.|+-+|++.|..+..+.+...+
T Consensus 175 ~r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF----------------- 236 (347)
T KOG0647|consen 175 ERH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF----------------- 236 (347)
T ss_pred CCc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-----------------
Confidence 888 99999987654332222223456899999899888899999999999999886532211
Q ss_pred EeecccceeecceeeEEEEecCC---------CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 359 IKGVLPKYFSSEWSVAQFRLVEG---------SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+++.|.. .|++++|+|.-..|+++|.||++.+||-+..
T Consensus 237 ----------------tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 237 ----------------TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred ----------------eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 2333331 4788999999999999999999999997664
No 119
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.6e-23 Score=191.54 Aligned_cols=191 Identities=16% Similarity=0.171 Sum_probs=158.3
Q ss_pred CceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEE---eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007 176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 249 (432)
..+++++.++.|.+.+ +.|.|-+|+++.|-....+ ..|..++..+++..-++ .++++ +.+|.+.+||...+
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~--~~vsa-~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR--LLVSA-GADGILKFWDFKKK 525 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc--eEEEc-cCcceEEEEecCCc
Confidence 4577888888888777 3899999999998887777 46788887777766554 34443 48999999999997
Q ss_pred ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 250 RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
.+..-..-...+.++..+.....++.+..|-. |+++|..+.+.++.|.+ |...|++++|||||++|++++.|++|++
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~-I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIALDDFS-IRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhcCcee-EEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 76554455678889999998889999999998 99999999999999996 6689999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC-CeEEEEE
Q 014007 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD-GSFYRCQ 408 (432)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~ 408 (432)
||+.++..+. .-.-+.+...+.|||+|.+||++..| .-|++|.
T Consensus 603 wDlpt~~lID------------------------------------~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 603 WDLPTGTLID------------------------------------GLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeccCcceee------------------------------------eEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999988432 11224568899999999999999998 5699996
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=177.60 Aligned_cols=208 Identities=13% Similarity=0.212 Sum_probs=175.0
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC------------C------ceeEEee-cCCceEEEEEecCc
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------------S------RCIGELS-FRSEVRSVKLRRDR 187 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~------------~------~~~~~~~-~~~~v~~~~~~~~~ 187 (432)
.|...+.+.+|+++|.++++|+.| ..|+|.|++. + -.++++- |...|+++.|+|..
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD-----~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSAD-----ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCc-----ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 588999999999999999999999 9999999861 1 1455555 99999999999999
Q ss_pred cEEEe---CCeEEEEEcCCCee---eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeecc
Q 014007 188 IIVVL---EQKIFVYNFADLKL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAH 257 (432)
Q Consensus 188 ~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~ 257 (432)
.++++ |++|++||+..... .+.++ ...++.++.|+|.|+.++++ ..-..+++||+.+-... .-..|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvg---TdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVG---TDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEe---cCCCceeEEeccceeEeeecCccccc
Confidence 98885 89999999976432 22222 34678899999999976654 47799999999984432 23579
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.+.|+++.+++.|++.++++.||. |++||--+++|+.++........|.+..|..+|+|+++.+.|..+++|.+.+++.
T Consensus 261 t~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 261 TGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 999999999999999999999999 9999999999999998764556899999999999999999999999999999998
Q ss_pred CCCCCCC
Q 014007 338 SARSEPR 344 (432)
Q Consensus 338 ~~~~~~~ 344 (432)
++...+.
T Consensus 340 l~~YtGA 346 (430)
T KOG0640|consen 340 LKEYTGA 346 (430)
T ss_pred EEEEecC
Confidence 7765533
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.4e-22 Score=155.69 Aligned_cols=242 Identities=10% Similarity=0.122 Sum_probs=191.7
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC------CCCc------eeE---Eee-cCCceEEEEEecCccEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD------HQSR------CIG---ELS-FRSEVRSVKLRRDRIIVV 191 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~------~~~~------~~~---~~~-~~~~v~~~~~~~~~~~~~ 191 (432)
....|.+++|+|.+...+.|+.. .+++|.-. +.+. +.. .-+ |.+.|+|.+|+|+|.+++
T Consensus 31 dsqairav~fhp~g~lyavgsns-----kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNS-----KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred chhheeeEEecCCCceEEeccCC-----ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 67788999999999999988877 77777642 2111 111 112 899999999999999999
Q ss_pred e---CCeEEEEEcCCCee-----eEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCc
Q 014007 192 L---EQKIFVYNFADLKL-----LHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSR 260 (432)
Q Consensus 192 ~---d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~ 260 (432)
+ |.+|++.-++...+ -.++..|.+.++.++|-.+ ....+++++|..|..|++-|-.. .....+.+|.+-
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 5 77898887654322 2356678888888888544 34556777777777787777665 445678899999
Q ss_pred eeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-----cCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 261 IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 261 i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
|.++ ++=+|-.+++|+.|.+ |++||++-..++.++....| ...|.+++..|.|++|++|-.|....+||++.+
T Consensus 186 ilal-yswn~~m~~sgsqdkt-irfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 186 ILAL-YSWNGAMFASGSQDKT-IRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred EEEE-EEecCcEEEccCCCce-EEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 9887 4447889999999999 99999999999988765333 257999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+. +..+..|...|.++.|+|...++.+++.|..|++-++.-
T Consensus 264 r~-----------------------------------iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 264 RM-----------------------------------IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred ce-----------------------------------eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 84 335667888899999999999999999999999977643
No 122
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=179.65 Aligned_cols=250 Identities=12% Similarity=0.145 Sum_probs=200.8
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE----E-------------e--ecCCceEEEEEecCc
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG----E-------------L--SFRSEVRSVKLRRDR 187 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~----~-------------~--~~~~~v~~~~~~~~~ 187 (432)
.|...+++++.+++..+.++++.+ ++|.-|++.+++... . - .|...+.+++.++|+
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~-----g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKD-----GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred cccCcceEEEeeccccceeecCCC-----cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 689999999999999999999999 999999998876331 1 0 255678999999999
Q ss_pred cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeE
Q 014007 188 IIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIAC 263 (432)
Q Consensus 188 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~ 263 (432)
+++++ |..|.||+.++.+.++.+.+|.+.|..++|-.....+|.+ +.|+.|++|+++. ..+.++.+|+..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~---s~Drsvkvw~~~~~s~vetlyGHqd~v~~ 291 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSA---SADRSVKVWSIDQLSYVETLYGHQDGVLG 291 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeee---ecCCceEEEehhHhHHHHHHhCCccceee
Confidence 99996 7789999999999999999999999999999888887754 3899999999988 456678999999999
Q ss_pred EEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (432)
Q Consensus 264 ~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 343 (432)
|....-++.+-+|+.|++ +++|++..-..+ .+.+ +.+.+-+++|-. ...|++|+++|.|.+|++.+.+.+-....
T Consensus 292 IdaL~reR~vtVGgrDrT-~rlwKi~eesql-ifrg--~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 292 IDALSRERCVTVGGRDRT-VRLWKIPEESQL-IFRG--GEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred echhcccceEEeccccce-eEEEecccccee-eeeC--CCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 998888888888889999 999999544333 4443 557899999964 46788999999999999998885532210
Q ss_pred CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
..+..+.. . .-.+...|++++..|..+++|+|+.+|.|++|.+...
T Consensus 367 ---------------AHgv~~~~-------~-~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 367 ---------------AHGVIPEL-------D-PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred ---------------cccccCCc-------c-ccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 00111100 0 0011137999999999999999999999999999664
No 123
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4.9e-23 Score=169.23 Aligned_cols=242 Identities=16% Similarity=0.132 Sum_probs=191.2
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADL 204 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~ 204 (432)
.....|.++.|++....|+.++.| |.+++||+........+.|..++.+.+|.++...+. .||.|+.+|+.++
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWD-----gslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWD-----GSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEecc-----CcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCC
Confidence 467889999999887777777788 999999999998888899999999999999877766 5999999999887
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~ 284 (432)
... .+..|..++.++...+..+.+ + +|+.|+.|++||.+.............|.++.. .|+.|++|+.+.. |.
T Consensus 86 ~~~-~igth~~~i~ci~~~~~~~~v--I-sgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~-v~ 158 (323)
T KOG1036|consen 86 NED-QIGTHDEGIRCIEYSYEVGCV--I-SGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRK-VL 158 (323)
T ss_pred cce-eeccCCCceEEEEeeccCCeE--E-EcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCce-EE
Confidence 654 455788999999999765533 3 467999999999997544444445558888876 5778999999999 99
Q ss_pred EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
+||+++............+..+.++++-|++.-+++++-||+|.+=.++....... .
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s---------------k-------- 215 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS---------------K-------- 215 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh---------------h--------
Confidence 99999887665444333556799999999988899999999998876665532110 0
Q ss_pred ceeecceeeEEEEecC---------CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 365 KYFSSEWSVAQFRLVE---------GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
-..++.|. -+|++++|+|-.+.|++|+.||.|.+|++-.
T Consensus 216 --------kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~ 263 (323)
T KOG1036|consen 216 --------KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN 263 (323)
T ss_pred --------ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence 11233332 1699999999999999999999999998744
No 124
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=6.8e-24 Score=196.19 Aligned_cols=243 Identities=12% Similarity=0.131 Sum_probs=176.4
Q ss_pred ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE-----------eecCCceEEEEEec---Ccc
Q 014007 123 DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-----------LSFRSEVRSVKLRR---DRI 188 (432)
Q Consensus 123 ~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~-----------~~~~~~v~~~~~~~---~~~ 188 (432)
.+...|...|++|.|+++|.+||+|+.| +.|+||.+...+.... +...+.+..+..++ .+.
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD-----~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGED-----GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCC-----ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3334799999999999999999999999 9999999765322110 00111111111111 111
Q ss_pred EEEe-----CCeEEEEEcC----CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCC
Q 014007 189 IVVL-----EQKIFVYNFA----DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDS 259 (432)
Q Consensus 189 ~~~~-----d~~i~i~d~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~ 259 (432)
.... ... .+.+.. ..+++..+.+|...|-.+.|+.++ ++ .+ .+.|.+|++|++..+.......|..
T Consensus 336 ~s~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fL-LS-SSMDKTVRLWh~~~~~CL~~F~Hnd 410 (712)
T KOG0283|consen 336 TSSSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FL-LS-SSMDKTVRLWHPGRKECLKVFSHND 410 (712)
T ss_pred ccccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC--ee-Ee-ccccccEEeecCCCcceeeEEecCC
Confidence 1111 111 222211 146788889999998777777764 33 33 4599999999999988777888999
Q ss_pred ceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 260 RIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 260 ~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.|+||+|+| |.+|+++|+.|+. ||||++...+.+..... ..-|++++|+|||++.++|+.+|.+++|++...+..
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~K-vRiWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGK-VRLWSISDKKVVDWNDL---RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred eeEEEEecccCCCcEeecccccc-eEEeecCcCeeEeehhh---hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEE
Confidence 999999999 8899999999999 99999999988877763 378999999999999999999999999999887632
Q ss_pred CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE---EecCCCceEEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF---RLVEGSPYIVAFGH-QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~ 409 (432)
... .+..- +.....|+++.|.| +...|++.+.|..|+||+.
T Consensus 487 ~~~------------------------------~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 487 SDF------------------------------HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDG 531 (712)
T ss_pred Eee------------------------------eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEec
Confidence 111 01100 11123799999998 4557888999999999887
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.1e-24 Score=179.73 Aligned_cols=244 Identities=14% Similarity=0.208 Sum_probs=199.5
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.......|.+.|..|++.. +.+|.+|.|++|+.|.++.. ...++. ....+..+..+.....+++++ .
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~---p~~til--g~s~~~gIdh~~~~~~FaTcG-------e 167 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP---PLHTIL--GKSVYLGIDHHRKNSVFATCG-------E 167 (433)
T ss_pred hhheeecccCceeeEEecc-cceEEecCCcceeeeeccCC---cceeee--ccccccccccccccccccccC-------c
Confidence 3466788999999999998 67788888899999998753 224443 667777888888888999998 5
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
.|.|||.....++..+. ....|.++.|+|-...++ +|+.|.+||++++.+++.+.. .-..+.++|+|.+-. +
T Consensus 168 ~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafn--F 244 (433)
T KOG0268|consen 168 QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFN--F 244 (433)
T ss_pred eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccc--e
Confidence 69999999999999999 788899999999765444 499999999999998887643 233457899994432 2
Q ss_pred EeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
+ ++++|..++.||++. ..+....+|.+.|.+++|+|.|+-+++|+.|.+ |+||..+.+.....+... .-..|.++
T Consensus 245 ~-~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYhtk-RMq~V~~V 321 (433)
T KOG0268|consen 245 V-AANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHTK-RMQHVFCV 321 (433)
T ss_pred e-eccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhHh-hhheeeEE
Confidence 3 356999999999998 567778899999999999999999999999999 999999887665554322 22579999
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
.||.|.+|+++|++|+.|++|.....+.+.
T Consensus 322 k~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 322 KYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred EEeccccEEEecCCCcceeeeecchhhhcC
Confidence 999999999999999999999987766443
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=4e-25 Score=200.36 Aligned_cols=241 Identities=18% Similarity=0.243 Sum_probs=204.5
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecC
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRD 186 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~ 186 (432)
+++|+.... . .|...+.++..-..+..+++|+.| ..+-+|.+..-..+..+. |..+|.++.|+.+
T Consensus 16 Lr~~~~~~~-------~--~hsaav~~lk~~~s~r~~~~Gg~~-----~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 16 LRVWDTREF-------V--AHSAAVGCLKIRKSSRSLVTGGED-----EKVNLWAIGKPNAITSLTGHESPIESLTFDTS 81 (825)
T ss_pred cccccchhh-------h--hhhhhhceeeeeccceeeccCCCc-----eeeccccccCCchhheeeccCCcceeeecCcc
Confidence 777874321 1 366666666666677899999998 899999988877777777 9999999999999
Q ss_pred ccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCcee
Q 014007 187 RIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIA 262 (432)
Q Consensus 187 ~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~ 262 (432)
..+++ .+|+|++||++.++.++++.+|...+..+.|+|-+.+. + +|+.|..+.+||.+. ++...+.+|...+.
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~--a-~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF--A-SGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe--c-cccccccceehhhhccCceeeecCCcceeE
Confidence 88887 38999999999999999999999999999999998744 3 578999999999994 88888899999999
Q ss_pred EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 342 (432)
++.|+|+|++++.+++|.. ++|||+..|+.+.+|.. |++.+..+.|+|..-++++|+.|+++++||+++.+.+.
T Consensus 159 ~l~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~--- 232 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS--- 232 (825)
T ss_pred EEeecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhhhhccCCCCceeeeeccceeEEee---
Confidence 9999999999999999999 99999999999999995 67899999999999999999999999999999866321
Q ss_pred CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007 343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS 403 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 403 (432)
..+.....|.+++|+|++..+++|..+..
T Consensus 233 --------------------------------s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 233 --------------------------------SGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred --------------------------------ccCCccCCceeeeecCCceeeecCchhhh
Confidence 11122346889999999999998887643
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.2e-22 Score=163.07 Aligned_cols=270 Identities=16% Similarity=0.213 Sum_probs=196.4
Q ss_pred cccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee-cCCceEEEEEecC--ccEEEe---C
Q 014007 124 FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRRD--RIIVVL---E 193 (432)
Q Consensus 124 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d 193 (432)
+..+|..-|.++.|+.-|..+++++.| ++|+|||..+. .+....+ |.+.|..+.|.+- |+.+++ |
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsD-----q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSD-----QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCC-----CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 334688889999999999999999999 99999997544 3444555 9999999999763 777773 9
Q ss_pred CeEEEEEcCC---------CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ce------eee---
Q 014007 194 QKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RT------KFI--- 254 (432)
Q Consensus 194 ~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~------~~~--- 254 (432)
+++.||.-.. .....++......+..+.|.|..-.+.+++++ .||.++||+.... .+ ..+
T Consensus 83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~-aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~ 161 (361)
T KOG2445|consen 83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS-ADGILRIYEAPDPMNLSQWTLQHEIQNV 161 (361)
T ss_pred CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec-cCcEEEEEecCCccccccchhhhhhhhc
Confidence 9999997421 12345566667789999999999888888755 8999999987651 11 111
Q ss_pred ----eccCCceeEEEEcCC---CCEEEEEcCC-----CceEEEEECCCC--c--eEEEEEeCCCcCceEEEEECCC----
Q 014007 255 ----MAHDSRIACFALTQD---GQLLATSSTK-----GTLVRIFNTLDG--T--LLQEVRRGADRAEIYSLAFSSN---- 314 (432)
Q Consensus 255 ----~~~~~~i~~~~~sp~---~~~l~~~~~d-----g~~i~vwd~~~~--~--~~~~~~~~~~~~~i~~~~~s~~---- 314 (432)
..+..+..|+.|+|. ..+||.|+.+ +. ++||....+ + .+.++. .|..+|++++|.|+
T Consensus 162 ~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 162 IDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRS 238 (361)
T ss_pred cCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCc
Confidence 146677889999983 4678888876 35 788876543 2 333444 47799999999996
Q ss_pred CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007 315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT 394 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 394 (432)
-.+||+++.|| |+||.++.....-..+.. ..+. .+.++ ....+..+..|++.|+.++|+-.|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~-----~~~~--------~~~~l--~v~~vs~~~~H~~~VWrv~wNmtGti 302 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEV-----LAPD--------LMTDL--PVEKVSELDDHNGEVWRVRWNMTGTI 302 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcc-----cCCC--------Ccccc--ceEEeeeccCCCCceEEEEEeeeeeE
Confidence 34799999999 999999864421100000 0000 00000 11225568889999999999999999
Q ss_pred EEEEecCCeEEEEEecCCCCCcce
Q 014007 395 VVILGMDGSFYRCQFDPVNGGEMT 418 (432)
Q Consensus 395 l~~~~~dg~v~iw~~~~~~~~~~~ 418 (432)
|++.|.||.|++|..+.....+|.
T Consensus 303 LsStGdDG~VRLWkany~n~~kC~ 326 (361)
T KOG2445|consen 303 LSSTGDDGCVRLWKANYNNLWKCT 326 (361)
T ss_pred EeecCCCceeeehhhhhhhhheee
Confidence 999999999999998776554443
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=188.41 Aligned_cols=243 Identities=17% Similarity=0.191 Sum_probs=195.2
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC-ceeEEee-cCCceEEEEEecCccEEEe-CCeEEEEEcCC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFAD 203 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~ 203 (432)
.|..+.+.++|.+++.++++++.| |.|++|+.... +.-..+. +...|.+++......+..+ +++|.+|.+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsd-----g~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSD-----GDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCC-----CceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 488889999999999999999999 99999997665 3333444 7777888777555222223 89999999988
Q ss_pred CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
++.-..+.-..-+++.++++.+|+.++ +|+.|-.|++.+... .....+.+|.++|.++.|+|++++||+.+.||.
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~ia---agsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~- 161 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIA---AGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK- 161 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEE---eecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce-
Confidence 766555555566888999999998554 355899999999877 567788999999999999999999999999999
Q ss_pred EEEEECCCCceEEEEEeCC------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 283 VRIFNTLDGTLLQEVRRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
|++||+.++.+..++.+-. ....+..++|+|+|..|+..+.|+.|++|+..+.......
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L--------------- 226 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL--------------- 226 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee---------------
Confidence 9999999998877765421 1245788999999888888889999999999988743211
Q ss_pred eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
..+.+...+..+.|+|+|++||+++.||.|.||+++.
T Consensus 227 ------------------r~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 227 ------------------RDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred ------------------cccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 1223344589999999999999999999999999973
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.8e-21 Score=172.68 Aligned_cols=235 Identities=15% Similarity=0.173 Sum_probs=172.7
Q ss_pred CeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeC
Q 014007 87 TLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 87 ~v~~~~~s~~~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~ 163 (432)
.+.+++|+|+|+.+ +++. ++.|++||..+++.. ..+. ....+..+.+++++..+ +++..+ +.|++||+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~--~~~~--~~~~~~~~~~~~~g~~l~~~~~~~-----~~l~~~d~ 102 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI--GTLP--SGPDPELFALHPNGKILYIANEDD-----NLVTVIDI 102 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE--Eecc--CCCCccEEEECCCCCEEEEEcCCC-----CeEEEEEC
Confidence 46789999999976 4555 455999999877654 3343 12234567888887655 455556 89999999
Q ss_pred CCCceeEEeecCCceEEEEEecCccEEEe---C-CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
.+++.+..+.+...+.+++|+|++.+++. + ..+.+||..+++....+.. ......++|++++..+++. +..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~~~ 179 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVS--SEIGG 179 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEE--cCCCC
Confidence 99888887776666789999999988873 2 3577889988877665533 2344678999998866543 34689
Q ss_pred cEEEEEccCCce-eeeeccC-----C--ceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 240 QVRVEHYASKRT-KFIMAHD-----S--RIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 240 ~i~i~d~~~~~~-~~~~~~~-----~--~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
.|.+||+.+... ..+..+. . ....++|+|++++++++ +.++. |.+||+++++.+..+. +...+.+++
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~---~~~~~~~~~ 255 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLL---VGQRVWQLA 255 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEE---eCCCcceEE
Confidence 999999988543 3332211 1 23568899999986554 45667 9999999998877665 235789999
Q ss_pred ECCCCCEEEEE-eCCCeEEEEEecCCCC
Q 014007 311 FSSNAQWLAVS-SDKGTVHVFNLKVNSG 337 (432)
Q Consensus 311 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~ 337 (432)
|+|+|++|+++ +.+|.|++||+++++.
T Consensus 256 ~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 256 FTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 99999999886 4689999999999873
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.5e-23 Score=182.63 Aligned_cols=235 Identities=10% Similarity=0.207 Sum_probs=204.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
..+.|.++.+.|||+.|++|+... +.|||+..........+. .....+.+++.++|...++++..| |.|.|||
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelt-ssapaCyALa~spDakvcFsccsd-----GnI~vwD 537 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDAKVCFSCCSD-----GNIAVWD 537 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcC-CcchhhhhhhcCCccceeeeeccC-----CcEEEEE
Confidence 456789999999999999998654 999999876666555554 344567788899999998888888 9999999
Q ss_pred CCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
+.+...++.|+ |...+.||.+++||..+.+ |++|+.||+++++.++... ....|..+..+|.++.+++ |..+
T Consensus 538 Lhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlav---GMen 613 (705)
T KOG0639|consen 538 LHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAV---GMEN 613 (705)
T ss_pred cccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceee---eccc
Confidence 99999999999 9999999999999999884 8899999999988776653 4566778889999997765 4478
Q ss_pred CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 318 (432)
+.+.|..........+..|++-|.++.|.+.|+++++.+.|+- +..|.+.-|..+...+ ....|.++..|.|.++|
T Consensus 614 s~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl-LnawrtPyGasiFqsk---E~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 614 SNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISFDDKYI 689 (705)
T ss_pred CcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhh-hhhccCccccceeecc---ccCcceeeeeccCceEE
Confidence 9999988888888888899999999999999999999999999 9999998888887776 55899999999999999
Q ss_pred EEEeCCCeEEEEEe
Q 014007 319 AVSSDKGTVHVFNL 332 (432)
Q Consensus 319 ~~~~~dg~i~iwd~ 332 (432)
++|+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888876
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=1.6e-20 Score=164.10 Aligned_cols=304 Identities=16% Similarity=0.205 Sum_probs=212.0
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
..-|.|++|.++|..+..-+++.|.||+..+.+.. +... .|...|.+++...+|..+. |+.| ..|..||-.
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~--k~~~-aH~ggv~~L~~lr~GtllS-GgKD-----Rki~~Wd~~ 316 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRIS--KQVH-AHDGGVFSLCMLRDGTLLS-GGKD-----RKIILWDDN 316 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEE--eEee-ecCCceEEEEEecCccEee-cCcc-----ceEEecccc
Confidence 36799999999998654444555999997655443 3333 6999999999999998887 8888 999999821
Q ss_pred CCcee------------------------------------------EEeecCCceEEEEEecCccEEEe---CCeEEEE
Q 014007 165 QSRCI------------------------------------------GELSFRSEVRSVKLRRDRIIVVL---EQKIFVY 199 (432)
Q Consensus 165 ~~~~~------------------------------------------~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~ 199 (432)
-+.+ ..+.|....+.++.+|+...+++ |+.+++|
T Consensus 317 -y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW 395 (626)
T KOG2106|consen 317 -YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLW 395 (626)
T ss_pred -ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEc
Confidence 1111 01125566778888887666663 8999999
Q ss_pred EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
+ ..++..+.. ...+..+..|+|.| .+++ |...|...+.|..+..+..+.....++++++|+|+|.+||.|+.|
T Consensus 396 ~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~---Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 396 N--DHKLEWTKI-IEDPAECADFHPSG-VVAV---GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred c--CCceeEEEE-ecCceeEeeccCcc-eEEE---eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence 9 445544443 35677789999998 4433 457899999999997776666668999999999999999999999
Q ss_pred CceEEEEECCCCc-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC---------
Q 014007 280 GTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP--------- 349 (432)
Q Consensus 280 g~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--------- 349 (432)
+. |+||-+.... ........ +..+|+.+.||+|+++|.+-+-|-.|..|....-+.... -....+..
T Consensus 469 ~~-iyiy~Vs~~g~~y~r~~k~-~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts-~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 469 NH-IYIYRVSANGRKYSRVGKC-SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS-VKDVKWATYTCTLGFEV 545 (626)
T ss_pred Ce-EEEEEECCCCcEEEEeeee-cCceeEEeeecCCCceEEeccCceEEEEEccccCcccce-ecceeeeeeEEEEEEEE
Confidence 99 9999887544 44344332 448999999999999999999999999994433322221 10000000
Q ss_pred --------------------CCCCCCceeEee-cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 350 --------------------TLPTSSLSFIKG-VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 350 --------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
...+.....++. ..|. ....-.+..+.+|.+.|.+++|.-+...|++.+.|.+|..|+
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc-~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPC-SSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEcccc-CCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 000000000000 0000 000112446778999999999999888888888999999998
Q ss_pred e
Q 014007 409 F 409 (432)
Q Consensus 409 ~ 409 (432)
+
T Consensus 625 l 625 (626)
T KOG2106|consen 625 L 625 (626)
T ss_pred e
Confidence 6
No 132
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.7e-21 Score=174.62 Aligned_cols=282 Identities=13% Similarity=0.195 Sum_probs=218.4
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
...--+..|.+++|+.+.+.||++-.+ .|.||++... ......+.++....|-+++|.+.+.++.++. + |.|
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~-s-----g~i 92 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIHGPEDRSIESLAWAEGGRLFSSGL-S-----GSI 92 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEecCCCCceeeEEEccCCeEEeecC-C-----ceE
Confidence 344457899999999999999999844 4999998753 3334566666788999999996666655554 4 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEE--EeeccCCcceEEEecCCCcEEEE
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ--IETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.-||+.+++.+..+. ..+.|++++.+|.+..++. ||.++.++...++.... +.-....+-++.|++++..++
T Consensus 93 ~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-- 170 (691)
T KOG2048|consen 93 TEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-- 170 (691)
T ss_pred EEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE--
Confidence 999999999999998 8899999999998877773 78788888777665443 233345677778888776543
Q ss_pred eecCCCCcEEEEEccCCceee-----eec----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007 233 CPGLQKGQVRVEHYASKRTKF-----IMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~-----~~~----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~ 303 (432)
+|+.||.|++||...+.... +.. ...-|.++.|-.++ .|++|...|+ |.+||...+.+++.+.. |.
T Consensus 171 -~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~ 245 (691)
T KOG2048|consen 171 -GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HD 245 (691)
T ss_pred -ecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hh
Confidence 46799999999998854322 111 23347788887666 6899999999 99999999999998885 66
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee-eEEEEecCCC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS-VAQFRLVEGS 382 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 382 (432)
+.|.+++..+++.++.+++.|+.|.-|...+.+. +|. ......|...
T Consensus 246 adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~--------------------------------~wv~~~~r~~h~hd 293 (691)
T KOG2048|consen 246 ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS--------------------------------EWVINSRRDLHAHD 293 (691)
T ss_pred cceeEEEEcCCCCeEEEccCCCceEEEEecCCcc--------------------------------ceeeeccccCCccc
Confidence 8999999999999999999999999998887752 121 1234456677
Q ss_pred ceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 383 PYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 383 v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
|.+++..++ .|++|+.|+.+.+-..
T Consensus 294 vrs~av~~~--~l~sgG~d~~l~i~~s 318 (691)
T KOG2048|consen 294 VRSMAVIEN--ALISGGRDFTLAICSS 318 (691)
T ss_pred ceeeeeecc--eEEecceeeEEEEccc
Confidence 888888776 8889999999887544
No 133
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.7e-22 Score=166.56 Aligned_cols=255 Identities=15% Similarity=0.232 Sum_probs=202.9
Q ss_pred EEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCc
Q 014007 109 RIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR 187 (432)
Q Consensus 109 ~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 187 (432)
..|...+....+.+.+. +|...|+.++.......+.+++.| .+-+||.+++|.|+..+. |.+.|++++|++.+
T Consensus 129 ssFk~~t~~~~lvre~~-GHkDGiW~Vaa~~tqpi~gtASAD-----hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~ 202 (481)
T KOG0300|consen 129 SSFKDGTVKFRLVRELE-GHKDGIWHVAADSTQPICGTASAD-----HTARIWSLESGACLATYTGHTGSVNSIKFHNSG 202 (481)
T ss_pred eeecCCceeEeehhhhc-ccccceeeehhhcCCcceeecccc-----cceeEEeeccccceeeecccccceeeEEecccc
Confidence 34443333334445665 899999999988877889999999 999999999999999999 99999999999999
Q ss_pred cEEEe---CCeEEEEE------cCC----------------------------------CeeeEEEeeccCCcceEEEec
Q 014007 188 IIVVL---EQKIFVYN------FAD----------------------------------LKLLHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 188 ~~~~~---d~~i~i~d------~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 224 (432)
.+++. |++-+||. +.. ..++..+.+|...+.++.|-.
T Consensus 203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~ 282 (481)
T KOG0300|consen 203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA 282 (481)
T ss_pred ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence 98884 78888986 111 013445666777777777777
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCC
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGAD 302 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~ 302 (432)
.|+.++. ++.|.+..+||+.++.+ ..+.+|....+.++-+|..+++++++.|.+ .++||++.. ..+..|.+ |
T Consensus 283 gg~Q~vT---aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtT-FRLWDFReaI~sV~VFQG--H 356 (481)
T KOG0300|consen 283 GGQQMVT---ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTT-FRLWDFREAIQSVAVFQG--H 356 (481)
T ss_pred Ccceeee---eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCce-eEeccchhhcceeeeecc--c
Confidence 7776653 34899999999999654 567899999999999999999999999999 999999854 44566775 6
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS 382 (432)
Q Consensus 303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (432)
...|+++.|.-+. .+++|++|.+|+|||+++.+.. +++++. +..
T Consensus 357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----------------------------------lATIRt-dS~ 400 (481)
T KOG0300|consen 357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----------------------------------LATIRT-DSP 400 (481)
T ss_pred ccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----------------------------------ceeeec-CCc
Confidence 7899999998765 5779999999999999998732 334443 346
Q ss_pred ceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 383 PYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 383 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
++.++.+..+..|+.--.+..|++|+++-
T Consensus 401 ~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred cceeEeecCCceEEeccCCceEEEEecCC
Confidence 88899988888888888888999999854
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=182.71 Aligned_cols=290 Identities=12% Similarity=0.146 Sum_probs=215.1
Q ss_pred EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE--eecccCcceeEEEEeeeC-----------CeEEEecCCCCCCCC
Q 014007 89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRC-----------NILALVGGGPDPQYP 154 (432)
Q Consensus 89 ~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-----------~~~~~~s~~~d~~~~ 154 (432)
-++.|++....|.+-. |+.++|||+..-...-. .-+ -|...|+++.--| -...+++++.|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD---- 401 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSD---- 401 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecCC----
Confidence 3568999888887776 66699999965443311 223 3788888776443 12357888888
Q ss_pred CCeEEEEeCCCCc---eeE-----------------------------------EeecCCceEEEEEecCccEEEe---C
Q 014007 155 LNKVMIWDDHQSR---CIG-----------------------------------ELSFRSEVRSVKLRRDRIIVVL---E 193 (432)
Q Consensus 155 ~~~v~iwd~~~~~---~~~-----------------------------------~~~~~~~v~~~~~~~~~~~~~~---d 193 (432)
++|++||+..+. ..+ .+.....+.+++++|+|+++++ .
T Consensus 402 -~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 402 -GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG 480 (1080)
T ss_pred -CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc
Confidence 999999987521 100 0112335899999999999996 5
Q ss_pred CeEEEEEcCCCeeeEEEeeccCCcceEEEecCC-CcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCC
Q 014007 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG 270 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~ 270 (432)
|++++|++...+....++.|...|.++.++.-. ..-+++ +++.|..|.|||+.. ..+.++.+|...|+++.|.-+|
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA-SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g 559 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA-SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG 559 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh-hccCCceEEEEecccccchhhhhcccccceeEEEEeecC
Confidence 799999999988888899999999999887543 223445 466999999999976 5667889999999999998877
Q ss_pred --CEEEEEcCCCceEEEEECCC-CceEEEEEeCC---CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCC
Q 014007 271 --QLLATSSTKGTLVRIFNTLD-GTLLQEVRRGA---DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (432)
Q Consensus 271 --~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 344 (432)
..+++++.|.. |. |+... ..-...+..+. ....++.|+..|..+++++++.|..|+|||+.++++.+.+
T Consensus 560 ln~~MiscGADks-im-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F--- 634 (1080)
T KOG1408|consen 560 LNRKMISCGADKS-IM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF--- 634 (1080)
T ss_pred CceEEEeccCchh-hh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee---
Confidence 77899999987 54 44332 11122233221 2357999999999999999999999999999999865432
Q ss_pred CCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 345 STSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
..-+.|+|..-.+...|.|.+|++.+.|.++.++++- .|+.+.++..
T Consensus 635 -----------------------------Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~--sgEcvA~m~G 681 (1080)
T KOG1408|consen 635 -----------------------------KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFV--SGECVAQMTG 681 (1080)
T ss_pred -----------------------------cccccCCCceEEEEECCCccEEEEeecCCceEEEEec--cchhhhhhcC
Confidence 2234577788889999999999999999999998874 4454444443
No 135
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=9.6e-22 Score=162.59 Aligned_cols=274 Identities=12% Similarity=0.120 Sum_probs=197.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe------------eEEEeecccCcceeEEEEeee-------CCeEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR------------EIFRRDFERGGGIGVVEMLFR-------CNILA 143 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~------------~~~~~~~~~~~~~~v~~~~~~-------~~~~~ 143 (432)
...-...+.|+|||..|.+-+ |+++++|++.... ......+ .....|...+|- |+..+
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCccce
Confidence 444566789999999877766 7789999984211 1111112 134556666663 56778
Q ss_pred EecCCCCCCCCCCeEEEEeCCCCceeEEee---cCC---ceEEEEEecCccEEEe--CCeEEEEEc-CCCeeeEEE----
Q 014007 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRS---EVRSVKLRRDRIIVVL--EQKIFVYNF-ADLKLLHQI---- 210 (432)
Q Consensus 144 ~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~---~v~~~~~~~~~~~~~~--d~~i~i~d~-~~~~~~~~~---- 210 (432)
+++.+.+ .-|++||.-+|+....+. |.. ...+++|+|||..++. ...|++||+ +.|+.....
T Consensus 126 ~a~ssr~-----~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 126 FAVSSRD-----QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeecccc-----CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence 8888888 999999999999887776 433 3568999999998884 789999998 445422111
Q ss_pred ---eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007 211 ---ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (432)
Q Consensus 211 ---~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw 286 (432)
.+..+-+.+++|+|.....+ ++ |+....+-||.-.. +.+..+.+|.+.|+.+.|.++|+.|++|+.....|-.|
T Consensus 201 ~~k~gq~giisc~a~sP~~~~~~-a~-gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMDSKTL-AV-GSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred cccccccceeeeeeccCCCCcce-ee-ecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 12345567889999876543 43 55778888887766 56677889999999999999999999998744339999
Q ss_pred ECCCC-ceEEEEEeCCCcCceEE--EEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 287 NTLDG-TLLQEVRRGADRAEIYS--LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 287 d~~~~-~~~~~~~~~~~~~~i~~--~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
|++.. ..+..+.++.. ..-.. ....|++++|++|+.||.|++||+++.-..
T Consensus 279 DiR~~~~pv~~L~rhv~-~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~------------------------- 332 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVG-DTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE------------------------- 332 (406)
T ss_pred eehhccchhhhhhhhcc-CccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-------------------------
Confidence 99864 55666665422 12333 445689999999999999999999984321
Q ss_pred cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC
Q 014007 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 401 (432)
...+..+...|+.++++|--.++|+++..
T Consensus 333 ---------~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 333 ---------VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ---------ccccccccccccceecCcccceeeeccCc
Confidence 12344567789999999997888877765
No 136
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=4e-22 Score=173.63 Aligned_cols=258 Identities=16% Similarity=0.177 Sum_probs=200.7
Q ss_pred CCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCe--eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 86 PTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~---~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
..+.++.|+.... |++++ |..|++|.-+... ........ +. ...+++......++++|+.. +.|+|
T Consensus 35 pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd--~~~Cv~~~s~S~y~~sgG~~-----~~Vki 105 (673)
T KOG4378|consen 35 PGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GD--NAFCVACASQSLYEISGGQS-----GCVKI 105 (673)
T ss_pred Ccceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccc-cc--hHHHHhhhhcceeeeccCcC-----ceeee
Confidence 3599999998765 55544 4448899754321 11112222 22 33344444455899999998 99999
Q ss_pred EeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEeec
Q 014007 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g 235 (432)
||++...+.+.++ |...|+++.++....++++ .|.|.|..+.++..-..+... ...++.+.+++..+.++..+
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~a-- 183 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIA-- 183 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEee--
Confidence 9999766777777 9999999999999999884 789999999998877777655 34456889999887765443
Q ss_pred CCCCcEEEEEccCCce--eeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 236 LQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
+.+|.|.+||+.+... .....|..+...|+|+| +..+|++.+.|.. |.+||.+..+....+. ...+...++|+
T Consensus 184 sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s~~s~~~l~---y~~Plstvaf~ 259 (673)
T KOG4378|consen 184 SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRSQASTDRLT---YSHPLSTVAFS 259 (673)
T ss_pred ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccce-EEEeecccccccceee---ecCCcceeeec
Confidence 4899999999988433 34568999999999999 5567889999999 9999999888877777 45789999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
++|.+|+.|...|.|..||++..+.. ++.+..|...|++++|-+..
T Consensus 260 ~~G~~L~aG~s~G~~i~YD~R~~k~P----------------------------------v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 260 ECGTYLCAGNSKGELIAYDMRSTKAP----------------------------------VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CCceEEEeecCCceEEEEecccCCCC----------------------------------ceEeeecccceeEEEeeecc
Confidence 99999999999999999999987632 56778899899999997764
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3e-21 Score=174.35 Aligned_cols=242 Identities=14% Similarity=0.220 Sum_probs=200.0
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE-Eee--cCCceEEEEEecCccEEEe--CCeEEEEEcC
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS--FRSEVRSVKLRRDRIIVVL--EQKIFVYNFA 202 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~-~~~--~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~ 202 (432)
....|++++|+.+...+|.+-.+ |.|.+|++..+-... .+. ....|.+++|.+.++++.+ +|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~-----g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTD-----GNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccC-----CcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc
Confidence 56789999999999999999988 999999998864333 333 5678999999988888774 8999999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---eeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
+++++..++...+.+..++.+|.+..+.+.| +||.+..++...+.+. .+....+.|.+++|+|++..|++|+.|
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 9999999999999999999999998776544 8997777777666553 234556899999999999999999999
Q ss_pred CceEEEEECCCCceEEEEEeC-----C-CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 280 GTLVRIFNTLDGTLLQEVRRG-----A-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~-----~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
|. |++||...+..++..... . .+.-|+++.|-.++ .|++|...|+|.+||...+..++
T Consensus 176 g~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiq-------------- 239 (691)
T KOG2048|consen 176 GV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQ-------------- 239 (691)
T ss_pred ce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhh--------------
Confidence 99 999999999887733321 1 22458888887665 68899999999999999988533
Q ss_pred CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
.++.|+..|.+++.++++++|+++|.|+.|..|.......
T Consensus 240 ---------------------S~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 240 ---------------------SHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred ---------------------hhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence 4567888899999999999999999999999998866533
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2e-22 Score=174.27 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=190.8
Q ss_pred CEEEEEc-CC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-c
Q 014007 98 GCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F 174 (432)
Q Consensus 98 ~~l~~~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~ 174 (432)
.+++++. .+ .+.+|.+....... ..+ --...+.++.-++.|.+++.|... |.+++|.+.+|..+..+. |
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~-q~~--v~Pg~v~al~s~n~G~~l~ag~i~-----g~lYlWelssG~LL~v~~aH 122 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVV-QYI--VLPGPVHALASSNLGYFLLAGTIS-----GNLYLWELSSGILLNVLSAH 122 (476)
T ss_pred hheeeecccCccccccccCchhhhh-hhc--ccccceeeeecCCCceEEEeeccc-----CcEEEEEeccccHHHHHHhh
Confidence 4666666 33 39999986544432 112 255678899999999999999777 999999999999998888 9
Q ss_pred CCceEEEEEecCccEEEe---CCeEEEEEcCC---------CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 175 RSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---------LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 175 ~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
-..|+++.|+.|+.++++ ||.|.+|.+.+ -++++.+..|.-+|+.+...+.|..-.+.++ +.|.+++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k 201 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIK 201 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEE
Confidence 999999999999999995 89999998743 3567788888889998888887655555543 4999999
Q ss_pred EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC----------------ceEEEEEeCCCcCce
Q 014007 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------------TLLQEVRRGADRAEI 306 (432)
Q Consensus 243 i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----------------~~~~~~~~~~~~~~i 306 (432)
+||+..+.+.........+.+++.+|-++.+++|+.+|. |.+.++... ..+..+.+|.....|
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce-EEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 999999887776677889999999999999999999999 988876532 334555654433599
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 341 (432)
++++.+-||.+|++|+.||.|.|||+.+.++++..
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 99999999999999999999999999998876654
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=8.2e-22 Score=178.30 Aligned_cols=234 Identities=17% Similarity=0.258 Sum_probs=195.4
Q ss_pred ccCCCCCCCeEE-EEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLH-ISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~-~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
....+|.+-|.+ ++|-+ ++-.|++|+ |..|.+|........ ..+. +|...|.++....++. +++|+.|
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~--~~Lk-gH~snVC~ls~~~~~~-~iSgSWD----- 121 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL--YTLK-GHKSNVCSLSIGEDGT-LISGSWD----- 121 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch--hhhh-ccccceeeeecCCcCc-eEecccc-----
Confidence 345567777776 78875 444566666 666999998877666 5676 8999999999877777 9999999
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.++++|-. +++...+. |...|++++.-|++.++. +|.+|++|. .++.++++.+|.+.|+.+++-+++. ++.
T Consensus 122 ~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~--flS 195 (745)
T KOG0301|consen 122 STAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH--FLS 195 (745)
T ss_pred cceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC--eEe
Confidence 99999964 56666677 999999999999998877 499999998 4788999999999999999999864 343
Q ss_pred eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEEEE
Q 014007 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF 311 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~~~ 311 (432)
| +.||.|++|++....+....+|...|+++...+++..++++++|++ ++||+.. ++.+.+. ++ ..|+++.+
T Consensus 196 c--sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~---lPttsiWsa~~ 267 (745)
T KOG0301|consen 196 C--SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT---LPTTSIWSAKV 267 (745)
T ss_pred e--cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe---cCccceEEEEE
Confidence 3 4899999999999999999999999999998888889999999999 9999854 8888888 44 47999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
-++|. |++|+.||.||||.....+
T Consensus 268 L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 268 LLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred eeCCC-EEEeccCceEEEEEecccc
Confidence 88887 5688889999999988655
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=8.7e-22 Score=176.50 Aligned_cols=280 Identities=13% Similarity=0.109 Sum_probs=197.8
Q ss_pred EEEEEcCC---CCEEEEEcCCc-EEEEEcCCCeeE-EE---eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 89 LHISFNQD---HGCFAAGTDHG-FRIYNCDPFREI-FR---RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 89 ~~~~~s~~---~~~l~~~~~~~-i~iw~~~~~~~~-~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
.+..|++- ..+|+.+.+.| |.++|....... .. +.. ..|...|.++.|.+....|++...| .++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~-~aH~nAifDl~wapge~~lVsasGD-----sT~r~ 126 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKP-LAHKNAIFDLKWAPGESLLVSASGD-----STIRP 126 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhccc-ccccceeEeeccCCCceeEEEccCC-----ceeee
Confidence 34566542 34788888555 999997543222 00 122 2699999999999988899999988 99999
Q ss_pred EeCCCCceeEE--ee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCee---------------------------
Q 014007 161 WDDHQSRCIGE--LS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKL--------------------------- 206 (432)
Q Consensus 161 wd~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~--------------------------- 206 (432)
||+++.+++.. +. |.+.|.+++|.+....++ + ||.|.|||++....
T Consensus 127 Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr 206 (720)
T KOG0321|consen 127 WDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKR 206 (720)
T ss_pred eeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcc
Confidence 99999988766 44 999999999999766555 3 89999999875320
Q ss_pred eEEEeeccCCcce---EEEecCCCcEEEEeecCCCCcEEEEEccCCce---------eeeecc---CCceeEEEEcCCCC
Q 014007 207 LHQIETIANPKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---------KFIMAH---DSRIACFALTQDGQ 271 (432)
Q Consensus 207 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---------~~~~~~---~~~i~~~~~sp~~~ 271 (432)
+.....+.+.+.. +.+..|.. .|+++|..|+.|+|||++.... ..+.-| .-.+.++.....|.
T Consensus 207 ~~k~kA~s~ti~ssvTvv~fkDe~--tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 207 IRKWKAASNTIFSSVTVVLFKDES--TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT 284 (720)
T ss_pred ccccccccCceeeeeEEEEEeccc--eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence 0011112222222 34445544 3455666799999999987321 112223 33577888888889
Q ss_pred EEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007 272 LLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (432)
+|++.+.|+. |++||+.+.. .+..+.+......-..-..+||+.+|++|+.|...++|.+.+.+..
T Consensus 285 ~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~----------- 352 (720)
T KOG0321|consen 285 YLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP----------- 352 (720)
T ss_pred eEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC-----------
Confidence 9988888999 9999998643 3444443322222334456899999999999999999999987632
Q ss_pred CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC-CCEEEEEecCCeEEEEEecC
Q 014007 350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ-KNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~~~~ 411 (432)
...+.+|.-.|++++|.|. -.-+++++.|-.++||++..
T Consensus 353 -----------------------~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 353 -----------------------PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred -----------------------hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 2246678888999999983 34577789999999999944
No 141
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=5.4e-22 Score=167.20 Aligned_cols=206 Identities=14% Similarity=0.204 Sum_probs=158.9
Q ss_pred cCCceEEEEEecCc--cEEEe---CCeEEEEEcCC----------------CeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 174 FRSEVRSVKLRRDR--IIVVL---EQKIFVYNFAD----------------LKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 174 ~~~~v~~~~~~~~~--~~~~~---d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
|.+.++.+...+-+ .+.++ .|.|+||++.. .+++.++.+|...-..++|+|-.... ++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~-Ll 228 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR-LL 228 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc-cc
Confidence 56666666655543 23332 67889998753 24567777888777889999954443 23
Q ss_pred eecCCCCcEEEEEccCCce----eeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 233 CPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~----~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+|..-+.|++|...++.- ..+.+|...|..++|||. ...|++|+.||+ |+|||++.+.....+....|.+.|+
T Consensus 229 -sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 -SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred -cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCcee
Confidence 355678899999887442 335679999999999994 468899999999 9999999984333332245788999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
-|.|+.+-.+||+|++||+++|||++..+.- ..+++++.|..+|+++.
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~--------------------------------~pVA~fk~Hk~pItsie 354 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSG--------------------------------QPVATFKYHKAPITSIE 354 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCC--------------------------------CcceeEEeccCCeeEEE
Confidence 9999998889999999999999999987621 12778999999999999
Q ss_pred Ecc-CCCEEEEEecCCeEEEEEecCCCC
Q 014007 388 FGH-QKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 388 ~s~-~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
|+| +...|++++.|..|.||++..+..
T Consensus 355 W~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 355 WHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eccccCceEEeccCCCcEEEEEeeccCC
Confidence 999 566788999999999999977543
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=2.9e-21 Score=160.05 Aligned_cols=286 Identities=15% Similarity=0.219 Sum_probs=208.0
Q ss_pred cccCCCCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEEcCCCe--eEEEeecccCcceeEEEEeeeCC----eEEEec
Q 014007 78 ESTSSSPPPTLLHISFNQ-----DHGCFAAGTDHGFRIYNCDPFR--EIFRRDFERGGGIGVVEMLFRCN----ILALVG 146 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~-----~~~~l~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~----~~~~~s 146 (432)
..+...|..+|..++|++ +-..+|+.+.+.+.||...... ..+.......+......++|.-+ ..+++.
T Consensus 31 ~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 31 NHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred eehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 367788999999999985 2236777777779999886443 22222222235566666666432 456777
Q ss_pred CCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEE---eeccCCcc
Q 014007 147 GGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQI---ETIANPKG 218 (432)
Q Consensus 147 ~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~---~~~~~~~~ 218 (432)
++.- |.|+|.|+.++++...+. |...|+.+.+.|+.. ++++ |..|++|++++..++..+ .+|.+.|-
T Consensus 111 ~G~~-----GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVL 185 (385)
T KOG1034|consen 111 GGYL-----GVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVL 185 (385)
T ss_pred ecce-----eEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEE
Confidence 7776 999999999999999998 999999999999863 3332 889999999999998877 56888899
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----------------------------eeeeccCCceeEEEEcCC
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----------------------------KFIMAHDSRIACFALTQD 269 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----------------------------~~~~~~~~~i~~~~~sp~ 269 (432)
++.|+.+++ .++++| .|..+++|++..+.. .+..-|...|.|+.|-
T Consensus 186 SvD~~~~gd--~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 186 SVDFSLDGD--RIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred EEEEcCCCC--eeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 999999998 445444 999999999984211 0112466677777773
Q ss_pred CCEEEEEcCCCceEEEEECC-CC-------------ceEEEEEeCCCcCceEEEE--ECCCCCEEEEEeCCCeEEEEEec
Q 014007 270 GQLLATSSTKGTLVRIFNTL-DG-------------TLLQEVRRGADRAEIYSLA--FSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 270 ~~~l~~~~~dg~~i~vwd~~-~~-------------~~~~~~~~~~~~~~i~~~~--~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
|+++++=+-++. |..|... -. ..+.++.- ....|+-+. |.|-+++||.|...|.|++||++
T Consensus 261 gd~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 261 GDFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred hhheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 678888888888 9999761 11 12233332 123455554 55668899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
..+.... .++.- ....|...+||.||..|+..+.||.|.-|+.
T Consensus 338 ~~ep~~~---------------------------------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 338 NNEPPKC---------------------------------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCCccC---------------------------------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 8774311 11111 2246889999999999999999999988875
No 143
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.9e-21 Score=157.38 Aligned_cols=246 Identities=17% Similarity=0.260 Sum_probs=177.1
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee--EEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQY 153 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~ 153 (432)
.+..+|.+-|+++.|.+.|+.+|+++ |..|+|||.+.... ......+ .|...|+.+.|.+ =|..+++++.|
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~D--- 82 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYD--- 82 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecC---
Confidence 45678999999999999999999998 55699999643332 3333444 6889999998854 37899999999
Q ss_pred CCCeEEEEeCCCC---------ceeEEee-cCCceEEEEEecC--ccEEE---eCCeEEEEEcCCC------eeeEEEe-
Q 014007 154 PLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVV---LEQKIFVYNFADL------KLLHQIE- 211 (432)
Q Consensus 154 ~~~~v~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~~---~d~~i~i~d~~~~------~~~~~~~- 211 (432)
+++.||.-... ....++. ..+.|+++.|.|. |..++ .||.++||+..+- .+.++++
T Consensus 83 --rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 83 --RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred --CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 99999974211 1233344 6789999999985 55565 3999999987652 2223333
Q ss_pred ------eccCCcceEEEecCCCc-EEEEeecCCC-----CcEEEEEccCC-----ceeeeeccCCceeEEEEcCC----C
Q 014007 212 ------TIANPKGLCAVSQGVGS-LVLVCPGLQK-----GQVRVEHYASK-----RTKFIMAHDSRIACFALTQD----G 270 (432)
Q Consensus 212 ------~~~~~~~~~~~~~~~~~-~~~~~~g~~d-----~~i~i~d~~~~-----~~~~~~~~~~~i~~~~~sp~----~ 270 (432)
.+..+..++.|++..-. .+++. |+.+ +.+.||..... .+..+.+|..+|+.++|.|+ -
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAv-gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y 239 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAV-GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSY 239 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEE-EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCce
Confidence 12334456666654321 13333 3222 48889987662 34456799999999999995 4
Q ss_pred CEEEEEcCCCceEEEEECCCC--------------------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 271 QLLATSSTKGTLVRIFNTLDG--------------------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 271 ~~l~~~~~dg~~i~vwd~~~~--------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
..||+++.|| |+||.++.. +.+..+. .|.+.|+.+.|+-.|..|++.+.||.|++|
T Consensus 240 ~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 240 HLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred eeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 6899999999 899998731 1222333 477899999999999999999999999999
Q ss_pred EecCC
Q 014007 331 NLKVN 335 (432)
Q Consensus 331 d~~~~ 335 (432)
...-.
T Consensus 316 kany~ 320 (361)
T KOG2445|consen 316 KANYN 320 (361)
T ss_pred hhhhh
Confidence 87543
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=3.6e-21 Score=166.18 Aligned_cols=287 Identities=11% Similarity=0.090 Sum_probs=206.8
Q ss_pred cccCCCCCCCeEEEEEcCCCC--EEEEEcCCc-EEEEEcCCCeeE--EEeecccCcceeEEEEeeeCCe-EEEecCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHG--CFAAGTDHG-FRIYNCDPFREI--FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDP 151 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~-i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~ 151 (432)
..+..-+...|++++|+|... ++|+|+..| |-+||+.+.+.. ....+. .|...|.++.|+|.. ..+++.+.|
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyD- 256 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYD- 256 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccC-
Confidence 356667889999999999654 677777555 999999532221 112232 688999999999854 567778888
Q ss_pred CCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEE-eC--CeEEEEEcCCCee-eEEEeeccCCcceEEEec
Q 014007 152 QYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV-LE--QKIFVYNFADLKL-LHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~-~d--~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~ 224 (432)
|+|++-|++.+.....+. ....+.++.|+.+...++ .+ |...+||++++.. ...+..|...|..++++|
T Consensus 257 ----GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 257 ----GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNP 332 (498)
T ss_pred ----ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCC
Confidence 999999998774433333 344566777877655444 32 4789999998654 666777888999999999
Q ss_pred CCCcEEEEeecCCCCcEEEEEccC---Cc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC----CCceEE
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYAS---KR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----DGTLLQ 295 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~---~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~----~~~~~~ 295 (432)
...+++ ++ ++.|++++|||++. +. ......|...|.+..|||.+-.|++.+.|.. |+|||.. .-..+.
T Consensus 333 ~~p~~l-aT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 333 VCPWFL-AT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCchhe-ee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccc
Confidence 988764 44 35899999999987 22 2345689999999999998878999999999 9999973 334444
Q ss_pred EEEeCCCc----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 296 EVRRGADR----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 296 ~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
++. |.+. -......|.|+..++++|..-..|-|||-..++.+.
T Consensus 410 ~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~-------------------------------- 456 (498)
T KOG4328|consen 410 TIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVC-------------------------------- 456 (498)
T ss_pred eee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEee--------------------------------
Confidence 454 1111 135567899999999999998899999998877321
Q ss_pred eeEEEEecCC-Cc-eEEEEccCCC-EEEEEecCCeEEEEEe
Q 014007 372 SVAQFRLVEG-SP-YIVAFGHQKN-TVVILGMDGSFYRCQF 409 (432)
Q Consensus 372 ~~~~~~~~~~-~v-~~~~~s~~~~-~l~~~~~dg~v~iw~~ 409 (432)
.+..+.. .| ....|+|-+. +++-++..|.|+||.-
T Consensus 457 ---el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 457 ---ELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ---eccCccccccccceeecccccceeccCCccceEEEEec
Confidence 1112221 23 3458999877 5555566899999863
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.9e-21 Score=168.08 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=195.0
Q ss_pred CCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 81 SSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~-~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
......+|.+.+|.|+|. .+++++... ++.||+.+.+........+.....+..+..++++.+++..+.. |.|
T Consensus 253 ~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~-----G~I 327 (514)
T KOG2055|consen 253 IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN-----GHI 327 (514)
T ss_pred eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC-----ceE
Confidence 344467899999999999 677777555 9999998877665555543334456677788999999999988 999
Q ss_pred EEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-CcceEEEecCCCcEEEEee
Q 014007 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 234 (432)
.+....+++.+..++..+.|..++|+.+++.+.. +|.|++||++...+++.+..... .-+.++.++++. ++|+
T Consensus 328 ~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~--ylA~- 404 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS--YLAT- 404 (514)
T ss_pred EeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc--eEEe-
Confidence 9999999999999999999999999999987773 88999999999999888864332 223567778877 5564
Q ss_pred cCCCCcEEEEEccC-------CceeeeeccCCceeEEEEcCCCCEEEEEcC--CCceEEEEECCCCceEEEEEeCC-CcC
Q 014007 235 GLQKGQVRVEHYAS-------KRTKFIMAHDSRIACFALTQDGQLLATSST--KGTLVRIFNTLDGTLLQEVRRGA-DRA 304 (432)
Q Consensus 235 g~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~~i~vwd~~~~~~~~~~~~~~-~~~ 304 (432)
|+..|.|.|||.++ +++..+..-...|++++|++++++||.++. +.. +|+-.+.+......+.... .-+
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCccc
Confidence 77999999999765 345556667788999999999999998875 456 8998888777666655421 125
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
.|+||+|||.|.+||.|..+|.+.+|.+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 69999999999999999999999999875
No 146
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=1e-21 Score=175.99 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=94.7
Q ss_pred ceeEEEEcC-CCCEEEEEcCCCceEEEEECCCC-------ceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEE
Q 014007 260 RIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG-------TLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVF 330 (432)
Q Consensus 260 ~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-------~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iw 330 (432)
.|+.+.|.| |...||+++.||. |++|.+..+ +....+.. |...|+++.|+|- ...|++++.|-+|++|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~--h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTI--HGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred eeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeec--ccceEEEEEecchhhhHhhhhhccceeeee
Confidence 467778888 7788999999999 999998754 33445554 5588999999994 5688999999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 331 NLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
|+.+.+. ...+.+|.+.|..++|||||+.+|+.|.||+|++|+-
T Consensus 706 Dl~~~~~-----------------------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 706 DLANAKL-----------------------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ehhhhhh-----------------------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCC
Confidence 9999873 3357899999999999999999999999999999764
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=6e-21 Score=172.71 Aligned_cols=302 Identities=14% Similarity=0.131 Sum_probs=219.0
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeec--ccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF--ERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (432)
.+.....+|.+.|..++|+|.|.+|.+.+ |.+-|||-.-..+... ..+ +.-|+....++++-+....+++|.+.
T Consensus 352 ~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w-HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdE-- 428 (764)
T KOG1063|consen 352 TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW-HEIARPQIHGYDLTCLSFVNEDLQFVSGADE-- 428 (764)
T ss_pred eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccce-eeecccccccccceeeehccCCceeeecccc--
Confidence 44567899999999999999999887776 7778888643222111 111 12478888899988866667777766
Q ss_pred CCCCeEEEEeCC-------------------------------------------CCce---------------------
Q 014007 153 YPLNKVMIWDDH-------------------------------------------QSRC--------------------- 168 (432)
Q Consensus 153 ~~~~~v~iwd~~-------------------------------------------~~~~--------------------- 168 (432)
..+|+|+.. +|..
T Consensus 429 ---KVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 429 ---KVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ---eeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 777888531 0100
Q ss_pred ------------e-EEeecCCceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 169 ------------I-GELSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 169 ------------~-~~~~~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
+ +.+.|...|++++.+|+++++++ ...|++|+..+....+.+..|.-.|+.++|+||++
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCc
Confidence 0 01226667999999999999995 34699999988888888999999999999999999
Q ss_pred cEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC--ceEEEEEeC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG--TLLQEVRRG 300 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~--~~~~~~~~~ 300 (432)
+++-++ .|.++.+|...... ....+.|..-|.+..|+|++++++|++.|.+ |++|..... +.+..+...
T Consensus 586 ~LLsvs---RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~-VkVW~~~~~~d~~i~~~a~~ 661 (764)
T KOG1063|consen 586 YLLSVS---RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK-VKVWEEPDLRDKYISRFACL 661 (764)
T ss_pred EEEEee---cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce-EEEEeccCchhhhhhhhchh
Confidence 765443 89999999876522 2336789999999999999999999999999 999998877 554443333
Q ss_pred CCcCceEEEEECCC-----CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007 301 ADRAEIYSLAFSSN-----AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ 375 (432)
Q Consensus 301 ~~~~~i~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (432)
.+...|+.++|.|- +..++.|-+.|.|.+|............ .+ .-...+..
T Consensus 662 ~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~--------------~~---------~~~~~l~~ 718 (764)
T KOG1063|consen 662 KFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVG--------------TF---------NLDTRLCA 718 (764)
T ss_pred ccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccce--------------ee---------eecccccc
Confidence 36688999999872 3367888899999999976332211110 00 00000222
Q ss_pred EEecCCCceEEEEccC--------C--CEEEEEecCCeEEEEEec
Q 014007 376 FRLVEGSPYIVAFGHQ--------K--NTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 376 ~~~~~~~v~~~~~s~~--------~--~~l~~~~~dg~v~iw~~~ 410 (432)
...|.+.|+.++|+|. . ..|++|+.|..++|++++
T Consensus 719 ~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 719 TIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 3456778999999974 2 246999999999999874
No 148
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=8.2e-23 Score=185.52 Aligned_cols=233 Identities=12% Similarity=0.211 Sum_probs=201.9
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
+-...|...|.|+..-..++.+++|++.. +-+|.+...... ..+. +|...|-++.|+.....++.|..+ |+
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i--~S~~-~hespIeSl~f~~~E~Llaagsas-----gt 93 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI--TSLT-GHESPIESLTFDTSERLLAAGSAS-----GT 93 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh--heee-ccCCcceeeecCcchhhhcccccC-----Cc
Confidence 34566889999999977888999998554 789998655444 3455 799999999999999999999999 99
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
|++||++.++.++++. |...+..+.|+|-+.+.+ .|..+++||++...+.+.+..|...+.++.|+|+|+.. +.
T Consensus 94 iK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v--~~ 171 (825)
T KOG0267|consen 94 IKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWV--AS 171 (825)
T ss_pred eeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCcee--ec
Confidence 9999999999999998 999999999999999997 48999999999888999999999999999999999844 43
Q ss_pred ecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 234 PGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
|++|..++|||+..+.+ ..|..|++.+.++.|+|..-++++|+.|++ |++||+++.+.+..... ....|.+.+|+
T Consensus 172 -g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn 247 (825)
T KOG0267|consen 172 -GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFN 247 (825)
T ss_pred -cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeec
Confidence 55799999999988655 567889999999999999999999999999 99999998888776664 35789999999
Q ss_pred CCCCEEEEEeCCC
Q 014007 313 SNAQWLAVSSDKG 325 (432)
Q Consensus 313 ~~~~~l~~~~~dg 325 (432)
|++..+++|....
T Consensus 248 ~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 248 PDGKIVLSGEQIS 260 (825)
T ss_pred CCceeeecCchhh
Confidence 9999998886543
No 149
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=3.6e-21 Score=154.88 Aligned_cols=283 Identities=12% Similarity=0.143 Sum_probs=194.5
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.-++..|...|+++.|-.+++ |..|...| |.+|.+.+........+ .+...|..+..-++ ..+.+-++| .
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd-----~ 77 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRD-----P 77 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCC-----c
Confidence 345668999999999998877 66777666 99999988776643333 47778888887777 667788888 9
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEE-----ecCcc----EEEeC----CeEEEEEcCCCeeeEEEee----ccCCcce
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKL-----RRDRI----IVVLE----QKIFVYNFADLKLLHQIET----IANPKGL 219 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~-----~~~~~----~~~~d----~~i~i~d~~~~~~~~~~~~----~~~~~~~ 219 (432)
.+.+|++.-+..+..-. -.++++.| .++++ .+..+ ..+++-|......+..... ..+.+.+
T Consensus 78 ~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc 155 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMC 155 (323)
T ss_pred eEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceee
Confidence 99999988755433222 22233322 22221 22221 1133333322222221111 1223344
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCC-----------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~ 288 (432)
..+.......+++.+|.++|.+.+||+.++ .......|..+|.++.|.+.-..=++|+.+.. +..|++
T Consensus 156 ~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk-l~~~Sl 234 (323)
T KOG0322|consen 156 QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK-LVMYSL 234 (323)
T ss_pred eeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc-ceeeee
Confidence 443333333344446889999999999884 22334578999999999875555567777777 888887
Q ss_pred CC--Cce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 289 LD--GTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 289 ~~--~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
.. +.+ ..++.. ..-.|..+..-||++.+|+++.|++|+||..++...
T Consensus 235 ~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p--------------------------- 285 (323)
T KOG0322|consen 235 NHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP--------------------------- 285 (323)
T ss_pred ccccCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc---------------------------
Confidence 53 222 122221 225688999999999999999999999999999874
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
++.++.|.+.|++++|+||.+.+|.++.|++|-+|++
T Consensus 286 --------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 --------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred --------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 5568889999999999999999999999999999986
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.5e-21 Score=157.42 Aligned_cols=221 Identities=17% Similarity=0.268 Sum_probs=167.8
Q ss_pred eEEEEeCCCCcee-----EEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee-----eEEEeeccCCcceEEE
Q 014007 157 KVMIWDDHQSRCI-----GELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL-----LHQIETIANPKGLCAV 222 (432)
Q Consensus 157 ~v~iwd~~~~~~~-----~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~ 222 (432)
...-|+.+..+.. ..++ |...|++++|+.||+.+++ |+.|++|++++... ++. ....+.-+.+.|
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~F 140 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVF 140 (420)
T ss_pred chhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEE
Confidence 3555655444332 2445 8999999999999999994 99999999987422 111 112234467999
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccCCce-------------eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT-------------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-------------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
+||.+.+++.+. ....+++|.+..+.- ..-..|.-.+..+-...++.+|++++.|.. |.+|+++
T Consensus 141 apDc~s~vv~~~--~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~-i~lw~lk 217 (420)
T KOG2096|consen 141 APDCKSVVVSVK--RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK-ICLWDLK 217 (420)
T ss_pred CCCcceEEEEEc--cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc-EEEEecC
Confidence 999998877763 467899997754211 112346677888888889999999999999 9999998
Q ss_pred CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS 369 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (432)
|+.+..+.. ....-+..+.||+|++|++++..-.|++|.+--++.- .+.+
T Consensus 218 -Gq~L~~idt--nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG---------------------------~fqe 267 (420)
T KOG2096|consen 218 -GQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG---------------------------TFQE 267 (420)
T ss_pred -Cceeeeecc--ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc---------------------------chhh
Confidence 999998875 3356678899999999999998888999998544310 0112
Q ss_pred ceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 370 EWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.....++++|...|..++|+++...+++.+.||+.+||+.|.
T Consensus 268 v~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 268 VKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred hhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 222557999999999999999999999999999999999877
No 151
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.9e-20 Score=157.72 Aligned_cols=308 Identities=14% Similarity=0.136 Sum_probs=219.0
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCC------eeEEEeecccCcceeEEEEeeeCCeEEEecCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPF------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 150 (432)
+.-+.+|.+-|+++.|+.++++|++|+|+. +++|+++.. +.+ ......|...|.+++|......+.+|+.+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI--~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPI--GVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCc--eeccCccccceEEEEEccCCeeEecCCCc
Confidence 455678999999999999999999999766 999998521 222 22223566899999999999999999999
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecC---CceEEEEEecCccEEEe---CCeEEEEEcCCCe-eeE--EEeeccCCcceEE
Q 014007 151 PQYPLNKVMIWDDHQSRCIGELSFR---SEVRSVKLRRDRIIVVL---EQKIFVYNFADLK-LLH--QIETIANPKGLCA 221 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~-~~~--~~~~~~~~~~~~~ 221 (432)
++|.+.|+++.+.+..+.|. +.|+.+..+|....+++ ++.|.+||.+... .+. .+.........+.
T Consensus 127 -----~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 127 -----GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred -----ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 99999999999999988854 48999999996665552 8899999998754 222 2223345566788
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCceee--------eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~ 293 (432)
|+|....++++. +..+-+-+||.+...... +......-.++.|+|+|..|++--.... -.+||+.+.++
T Consensus 202 F~P~~P~Li~~~--~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~-P~~~D~~S~R~ 278 (609)
T KOG4227|consen 202 FHPETPALILVN--SETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC-PLYFDFISQRC 278 (609)
T ss_pred ecCCCceeEEec--cccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC-CEEeeeecccc
Confidence 999887766543 467889999998733211 1111222357789999998887766655 67889877655
Q ss_pred EE-EEEeCC-----CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007 294 LQ-EVRRGA-----DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (432)
Q Consensus 294 ~~-~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (432)
.. .+. +. ....+.+++|-.|. -+++|+.+-.|++|.+........+.. +..-.-.+|.-.
T Consensus 279 ~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~------------IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 279 FVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQ------------IGHDEEEMPSEI 344 (609)
T ss_pred eeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccc------------cCcchhhCchhh
Confidence 32 222 11 12367788887654 489999999999999876442211100 000000111111
Q ss_pred ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
--...+..+++|...++.|.|+|...+|++.+-...++||.-
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 112237789999999999999999999999999999999964
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=9.7e-21 Score=170.76 Aligned_cols=271 Identities=12% Similarity=0.153 Sum_probs=209.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
.|+.++|-|||..|+.+.++.+.|||.+.+... .+++ +|...|.+++|+.+|..+++|+.| ..|.+|+- .-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll--qtLK-gHKDtVycVAys~dGkrFASG~aD-----K~VI~W~~-kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL--QPLK-GHKDTVYCVAYAKDGKRFASGSAD-----KSVIIWTS-KL 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc--cccc-cccceEEEEEEccCCceeccCCCc-----eeEEEecc-cc
Confidence 899999999999999999999999999887766 7787 899999999999999999999999 99999983 33
Q ss_pred ceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007 167 RCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (432)
Q Consensus 167 ~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 244 (432)
+-+..+.|...|.|+.|+|-...+++ =...-+|........ ..+ ....+.+++|..||..+++. -.+|+|.+-
T Consensus 85 EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-K~k-ss~R~~~CsWtnDGqylalG---~~nGTIsiR 159 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-KHK-SSSRIICCSWTNDGQYLALG---MFNGTISIR 159 (1081)
T ss_pred cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-hhh-hheeEEEeeecCCCcEEEEe---ccCceEEee
Confidence 44455669999999999998887774 456678886543222 111 22345678888888866553 478999998
Q ss_pred EccCCceeeee---ccCCceeEEEEcCCC-----CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007 245 HYASKRTKFIM---AHDSRIACFALTQDG-----QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 245 d~~~~~~~~~~---~~~~~i~~~~~sp~~-----~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
+-...+...+. +.+++|.+++|+|.. ..+++.....+ +.++.+ +|+.+..-+. ..-...++.+-++|.
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNGE 235 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCCc
Confidence 76554433333 477899999999953 47788888888 888876 5555443332 224567899999999
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEE
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV 396 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 396 (432)
+++.|+.|+.+++|-.+.-. +.++...+..|+.++..|+++.++
T Consensus 236 y~LiGGsdk~L~~fTR~Gvr------------------------------------LGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRDGVR------------------------------------LGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred EEEEccCCCceEEEeecCeE------------------------------------EeeccccceeEEEEEEccCCceEE
Confidence 99999999999999665432 223333456799999999999999
Q ss_pred EEecCCeEEEEEecC
Q 014007 397 ILGMDGSFYRCQFDP 411 (432)
Q Consensus 397 ~~~~dg~v~iw~~~~ 411 (432)
.|+.||++--|++-.
T Consensus 280 ~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 280 VGCQDGTIACYNLIF 294 (1081)
T ss_pred EEEccCeeehhhhHH
Confidence 999999999887744
No 153
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.7e-21 Score=163.25 Aligned_cols=240 Identities=17% Similarity=0.228 Sum_probs=178.8
Q ss_pred EEEEEcC-------CCCEEEEEc-CCcEEEEEcCCCeeEEEe-ec-----------------ccCcceeEEEEeeeCC-e
Q 014007 89 LHISFNQ-------DHGCFAAGT-DHGFRIYNCDPFREIFRR-DF-----------------ERGGGIGVVEMLFRCN-I 141 (432)
Q Consensus 89 ~~~~~s~-------~~~~l~~~~-~~~i~iw~~~~~~~~~~~-~~-----------------~~~~~~~v~~~~~~~~-~ 141 (432)
.|+.|.. -|+++|.|+ +..|.|||++-....+.. .+ ..+|...|..++|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5667743 256999999 666999998632221100 00 1257778888888775 4
Q ss_pred EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCc-cEEE---eCCeEEEEEcCCCe-eeEEEeeccC
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLK-LLHQIETIAN 215 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~-~~~~~~~~~~ 215 (432)
..|++|+.| .+|++||+.++++...+. |...|.++.|+|.. .+++ .|++|.+.|++... .-..++ ..+
T Consensus 257 nVLaSgsaD-----~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g 330 (463)
T KOG0270|consen 257 NVLASGSAD-----KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDG 330 (463)
T ss_pred eeEEecCCC-----ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ecc
Confidence 678999999 999999999999999999 89999999999964 4444 39999999998532 222332 345
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCc
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGT 292 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~ 292 (432)
.+..++|.+.....+++ +..||.|+-+|+|. +.+.++.+|.+.|.++++++. ..+|++++.|+. |++|++..-.
T Consensus 331 ~VEkv~w~~~se~~f~~--~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~ 407 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFV--STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDS 407 (463)
T ss_pred ceEEEEecCCCceeEEE--ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCC
Confidence 67789999998877665 46899999999998 577889999999999999874 457899999999 9999987544
Q ss_pred eEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCC
Q 014007 293 LLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 293 ~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~ 337 (432)
..........-+...|+++.|+-. .|+.|+..+.++|||+.+...
T Consensus 408 ~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 408 PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred CcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 322221100113467777888654 567777888999999988764
No 154
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.6e-21 Score=171.42 Aligned_cols=241 Identities=18% Similarity=0.195 Sum_probs=195.9
Q ss_pred cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccE--EE--eCCeEEEEEc
Q 014007 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII--VV--LEQKIFVYNF 201 (432)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~d~~i~i~d~ 201 (432)
.+|...|.++...+.|..+++|+.| |+|+||.+.+|.+++++...+.|.+++|+|.+.. ++ .+..+.|.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdD-----GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDD-----GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCC-----CcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 3899999999999999999999999 9999999999999999999999999999997532 22 2333333332
Q ss_pred CCC------------------------------------e-eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007 202 ADL------------------------------------K-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (432)
Q Consensus 202 ~~~------------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 244 (432)
.-| + -+...-.+...+..+.|+-.|+++..++..+....|.|+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 111 0 011222456778889999999999888766677889999
Q ss_pred EccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007 245 HYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323 (432)
Q Consensus 245 d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 323 (432)
++.....+ -+....+.|.++.|+|...+|++++... |+|||+...++++++..+ ...|.+++.+|.|.-|+.++.
T Consensus 552 QLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 552 QLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred ecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEecC
Confidence 98875444 3556678899999999999999988765 999999998888877754 368999999999999999999
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS 403 (432)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 403 (432)
|+.+..||+.-.... ..+++.|...|+.|+|++.-.++++|+.||.
T Consensus 628 d~k~~WfDldlsskP----------------------------------yk~lr~H~~avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKP----------------------------------YKTLRLHEKAVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred CCeeEEEEcccCcch----------------------------------hHHhhhhhhhhhhhhhccccceeeeecCCCc
Confidence 999999999865421 3457789999999999999999999999999
Q ss_pred EEEEEe
Q 014007 404 FYRCQF 409 (432)
Q Consensus 404 v~iw~~ 409 (432)
+.||.-
T Consensus 674 v~Vfhg 679 (733)
T KOG0650|consen 674 VIVFHG 679 (733)
T ss_pred EEEEee
Confidence 999753
No 155
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=2.5e-20 Score=157.21 Aligned_cols=249 Identities=14% Similarity=0.183 Sum_probs=177.6
Q ss_pred cceeEEEEeee--CCeEEEecCCCCCCCCCCeEEEEeCCC----------------CceeEEee-cCCceEEEEEec--C
Q 014007 128 GGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIWDDHQ----------------SRCIGELS-FRSEVRSVKLRR--D 186 (432)
Q Consensus 128 ~~~~v~~~~~~--~~~~~~~s~~~d~~~~~~~v~iwd~~~----------------~~~~~~~~-~~~~v~~~~~~~--~ 186 (432)
|...+..+.-. ++..+.++-+.. |.|+|||+.. .+++.++. |...=++++|+| .
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~-----G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSEN-----GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccceeeecccCCcceeeeeccc-----CcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 34444444333 355677777777 9999999742 23556666 888889999999 4
Q ss_pred ccEEEe--CCeEEEEEcCCCeee---EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC---ceeeeeccC
Q 014007 187 RIIVVL--EQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHD 258 (432)
Q Consensus 187 ~~~~~~--d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~ 258 (432)
|.++.. -+.|++|...++.-. ..+.+|...|..++|+|..+.++..| +.||.|+|||++.+ ......+|.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc--S~DgsIrIWDiRs~~~~~~~~~kAh~ 302 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC--SCDGSIRIWDIRSGPKKAAVSTKAHN 302 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee--ecCceEEEEEecCCCccceeEeeccC
Confidence 555543 458999998876432 23456888899999999988876443 57999999999996 344568999
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCC---CceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecC
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD---GTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~---~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~ 334 (432)
+.|+.|.|+..-.+||+|+.||+ ++|||++. ++++..|+. |..+|+++.|+|. ...|++++.|..|.|||+..
T Consensus 303 sDVNVISWnr~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 SDVNVISWNRREPLLASGGDDGT-LSIWDLRQFKSGQPVATFKY--HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceeeEEccCCcceeeecCCCce-EEEEEhhhccCCCcceeEEe--ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999998889999999999 99999986 567888886 6799999999985 45788888999999999976
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC--CCceEEEEccC-CCEEEEEecCCeEE
Q 014007 335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQ-KNTVVILGMDGSFY 405 (432)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~-~~~l~~~~~dg~v~ 405 (432)
.......... ....+..+-|+ .+-.|. ..|..|.|++. ..+|++.+.||.-.
T Consensus 380 E~D~ee~~~~----------a~~~L~dlPpQ---------LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 380 EADEEEIDQE----------AAEGLQDLPPQ---------LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred cCChhhhccc----------cccchhcCCce---------eEEEecchhHhhhheeccCCCCeEEEecccceeE
Confidence 5421111000 00001111111 122343 46888999985 44777888888533
No 156
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.5e-21 Score=178.75 Aligned_cols=233 Identities=14% Similarity=0.199 Sum_probs=172.6
Q ss_pred EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc----eeEEee----cCCceEEEEEec-CccEEE---eCCeEEEEE
Q 014007 133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS----FRSEVRSVKLRR-DRIIVV---LEQKIFVYN 200 (432)
Q Consensus 133 ~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~----~~~~v~~~~~~~-~~~~~~---~d~~i~i~d 200 (432)
..+...++...++.++. ..+++|.+.... +...++ ....+..+.|.. +..+++ ..|.|.+||
T Consensus 43 nAIs~nr~~~qiv~AGr------s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 43 NAISVNRDINQIVVAGR------SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred ceEeecCCcceeEEecc------cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 34445566666666655 467777655432 111111 122345567764 345555 389999999
Q ss_pred cCC---CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcC-CCCEEEE
Q 014007 201 FAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQ-DGQLLAT 275 (432)
Q Consensus 201 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp-~~~~l~~ 275 (432)
+.. .+.+..+..|...+..+.|++-..++++ +|+.||.|++||++.+ ...++.+....|..|+|+| .+.++++
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~ili--SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s 194 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILI--SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFAS 194 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEE--ecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEE
Confidence 987 5667788889999999999998887654 5779999999999984 4566778888999999999 6788999
Q ss_pred EcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007 276 SSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
+...|. +++||++.. ++...+. .|.++|.++.|+|++.+||+|+.|+.|+|||..+.+.-.
T Consensus 195 ~~dsG~-lqlWDlRqp~r~~~k~~--AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--------------- 256 (839)
T KOG0269|consen 195 IHDSGY-LQLWDLRQPDRCEKKLT--AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--------------- 256 (839)
T ss_pred ecCCce-EEEeeccCchhHHHHhh--cccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc---------------
Confidence 999999 999999875 4455555 478999999999999999999999999999999766211
Q ss_pred CceeEeecccceeecceeeEEEEec-CCCceEEEEccCCC-EEEEEec--CCeEEEEEecC
Q 014007 355 SLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGHQKN-TVVILGM--DGSFYRCQFDP 411 (432)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~-~l~~~~~--dg~v~iw~~~~ 411 (432)
....+ -.+|..|+|-|... +||+++. |-.|+||++..
T Consensus 257 --------------------~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 257 --------------------KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred --------------------eeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 01111 24688999999655 5666655 88899999854
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5.6e-20 Score=151.68 Aligned_cols=246 Identities=13% Similarity=0.115 Sum_probs=185.0
Q ss_pred EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee
Q 014007 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL 207 (432)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~ 207 (432)
..++.|++.|.+++.|..| |.|.|||+.+...-+.+. |..+|.+++|++||+.+.+ |..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-----G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-----GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccC-----CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCce
Confidence 7789999999999999999 999999999988777887 9999999999999999884 889999999999999
Q ss_pred EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc-----CCceeEEEEcCCCCEEEEEcCCCce
Q 014007 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-----DSRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
+.+. ...+|..+.|+|...+..+++. .+..-.+.++.......+... +..-.+..|.+.|+++++|...|.
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~--~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGk- 176 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATI--MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGK- 176 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEE--ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcce-
Confidence 9986 5678999999999988888763 344455555554332222211 112234468999999999999999
Q ss_pred EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (432)
+.++|..+.+++..++.. ....|..+.|+..|++|+.-+.|+.|+.|+++.-.....- .-.... -.
T Consensus 177 llv~~a~t~e~vas~rit-s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~------------~e~e~~-~K 242 (405)
T KOG1273|consen 177 LLVYDAETLECVASFRIT-SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD------------GEVEPE-HK 242 (405)
T ss_pred EEEEecchheeeeeeeec-hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc------------CCcChh-HH
Confidence 999999999999998853 2367999999999999999999999999998743211000 000000 00
Q ss_pred ccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec-CCeEEEEEecC
Q 014007 363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM-DGSFYRCQFDP 411 (432)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~ 411 (432)
+.+..+ .-.=.+++||.+|.+++.++. -..+|||.-..
T Consensus 243 ~qDvVN-----------k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 243 LQDVVN-----------KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred HHHHHh-----------hhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 000000 012346899999999988775 46699987544
No 158
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=2.5e-19 Score=146.55 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=157.7
Q ss_pred CcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCc----------eeEEe--e----cCCceEEEEEecC--c
Q 014007 127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSR----------CIGEL--S----FRSEVRSVKLRRD--R 187 (432)
Q Consensus 127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~----------~~~~~--~----~~~~v~~~~~~~~--~ 187 (432)
.|...|.++...+ .+.++++|+.| |.|.+||++... .+..+ . |+-.|..+.|-|- |
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgad-----gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGAD-----GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCC-----ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 3566666666544 58899999999 999999987532 11111 1 5667999999883 4
Q ss_pred cEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC-cEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeE
Q 014007 188 IIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIAC 263 (432)
Q Consensus 188 ~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~ 263 (432)
.+.. .|.++++||..+.+....++ ..+.|..-+++|-.. +.+++ +|..+-.|++.|+.++.. ..+.+|...|.+
T Consensus 116 mFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA-~gtr~~~VrLCDi~SGs~sH~LsGHr~~vla 193 (397)
T KOG4283|consen 116 MFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIA-AGTRDVQVRLCDIASGSFSHTLSGHRDGVLA 193 (397)
T ss_pred eeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEE-EecCCCcEEEEeccCCcceeeeccccCceEE
Confidence 4444 39999999999988777775 355677778888665 44444 577999999999999654 568899999999
Q ss_pred EEEcCCCC-EEEEEcCCCceEEEEECCCC-ceEEEEEe------------CCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 264 FALTQDGQ-LLATSSTKGTLVRIFNTLDG-TLLQEVRR------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 264 ~~~sp~~~-~l~~~~~dg~~i~vwd~~~~-~~~~~~~~------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
+.|+|... .|++|+.||. |++||++.. .|...+.. ..|.+.+..++|+.+|.++++++.|..+++
T Consensus 194 V~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 99999765 5789999999 999999864 34444432 236678999999999999999999999999
Q ss_pred EEecCCCC
Q 014007 330 FNLKVNSG 337 (432)
Q Consensus 330 wd~~~~~~ 337 (432)
|+..+++.
T Consensus 273 wn~~~G~n 280 (397)
T KOG4283|consen 273 WNMESGRN 280 (397)
T ss_pred eecccCcc
Confidence 99999874
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3.5e-21 Score=183.84 Aligned_cols=244 Identities=14% Similarity=0.208 Sum_probs=194.3
Q ss_pred CCCCeEEEEEcCCCCE----EEEEcCCc-EEEEEcCCC----eeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCC
Q 014007 84 PPPTLLHISFNQDHGC----FAAGTDHG-FRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQY 153 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~----l~~~~~~~-i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~ 153 (432)
...+-+.++|.+.|.. ||.|.++| |.+|+.... +......+. .|.+.|..+.|++... .+++|+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~--- 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD--- 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC---
Confidence 3557789999988775 66676665 999997642 222223343 6999999999998755 99999999
Q ss_pred CCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEE-Ee---CCeEEEEEcCCCeeeEEEeeccC--CcceEEEec
Q 014007 154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIV-VL---EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQ 224 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~ 224 (432)
|.|.|||+.+-+.-..+. ..+.|.+++|+..-..+ ++ +|++.|||++..+.+..+..+.. .+..++|+|
T Consensus 139 --geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 139 --GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred --CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 999999998754433332 56789999999865444 42 78999999999887777765544 355799999
Q ss_pred CCCcEEEEeec-CCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007 225 GVGSLVLVCPG-LQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (432)
Q Consensus 225 ~~~~~~~~~~g-~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~ 300 (432)
+....++++++ .....|.+||++. ..++.+.+|...|.++.|++.+ ++|++++.|+. |.+|+..+++.+..+...
T Consensus 217 ~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~-ii~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 217 DHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNR-IICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred CCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCC-eeEecCCCceEeeecCCC
Confidence 98877666544 2456799999987 5677889999999999999955 89999999999 999999999999999863
Q ss_pred CCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007 301 ADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 336 (432)
...+..+.|+|... .|++++-||.|.||.+....
T Consensus 296 --~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 296 --GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred --CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 47899999999766 78888999999999998765
No 160
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=3.3e-18 Score=155.26 Aligned_cols=270 Identities=12% Similarity=0.124 Sum_probs=178.8
Q ss_pred EcCCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecC-CCCCCCCCCeEEEEeCCC-Cce--eEEeecCCc
Q 014007 103 GTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGG-GPDPQYPLNKVMIWDDHQ-SRC--IGELSFRSE 177 (432)
Q Consensus 103 ~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-~~d~~~~~~~v~iwd~~~-~~~--~~~~~~~~~ 177 (432)
+.+++|.+|++++ ++......+. .......+.+++++..++.+ ..+ +.|.+|++.. ++. +........
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~-----~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPE-----FRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCC-----CcEEEEEECCCCceEEeeeecCCCC
Confidence 3467799999964 3433334453 33456678889988766544 445 8999999863 332 333334556
Q ss_pred eEEEEEecCccEEEe----CCeEEEEEcCC-Ce---eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-
Q 014007 178 VRSVKLRRDRIIVVL----EQKIFVYNFAD-LK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS- 248 (432)
Q Consensus 178 v~~~~~~~~~~~~~~----d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~- 248 (432)
...++++|+++++++ ++.|.+|++.+ +. .+..+.. ......++++|+++.++++. ..++.|.+||++.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~ 158 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDD 158 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCC
Confidence 788999999987773 78999999964 32 2222222 22345688999998776554 4679999999976
Q ss_pred Cceee-----ee-ccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCC--Cc--eEEEEEeCC----CcCceEEEEECC
Q 014007 249 KRTKF-----IM-AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD--GT--LLQEVRRGA----DRAEIYSLAFSS 313 (432)
Q Consensus 249 ~~~~~-----~~-~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~--~~--~~~~~~~~~----~~~~i~~~~~s~ 313 (432)
+.+.. .. ........++|+|+|++|+++.. ++. |.+||+.. ++ .+..+.... +......+.|+|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 32211 11 12345678999999999988876 777 99999973 33 233333211 112234689999
Q ss_pred CCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 314 NAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 314 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
+|++|+++. .++.|.+|++....... .+ +..... ......++|+|||
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~~~~-----------------~~--------------~~~~~~-~~~p~~~~~~~dg 285 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDGSVL-----------------SF--------------EGHQPT-ETQPRGFNIDHSG 285 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCCCeE-----------------EE--------------eEEEec-cccCCceEECCCC
Confidence 999999885 47899999997543110 00 111111 1235678999999
Q ss_pred CEEEEEec-CCeEEEEEecCCCCC
Q 014007 393 NTVVILGM-DGSFYRCQFDPVNGG 415 (432)
Q Consensus 393 ~~l~~~~~-dg~v~iw~~~~~~~~ 415 (432)
++|++++. +++|.+|+++..+|.
T Consensus 286 ~~l~va~~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEIDGETGL 309 (330)
T ss_pred CEEEEEEccCCcEEEEEEcCCCCc
Confidence 99998886 899999999876654
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=4.8e-19 Score=151.00 Aligned_cols=286 Identities=15% Similarity=0.175 Sum_probs=199.7
Q ss_pred CCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCC-------eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007 84 PPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPF-------REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
...+|..+.|.++.. .||+|+ |..|+||.++.. +..+...+. +|...|..+.|++++..+++|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls-~H~~aVN~vRf~p~gelLASg~D~---- 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLS-RHTRAVNVVRFSPDGELLASGGDG---- 86 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeeccc-CCcceeEEEEEcCCcCeeeecCCC----
Confidence 356899999999876 889887 667999988532 334455665 899999999999999999999999
Q ss_pred CCeEEEEeCC--------C-----C---ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc
Q 014007 155 LNKVMIWDDH--------Q-----S---RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA 214 (432)
Q Consensus 155 ~~~v~iwd~~--------~-----~---~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~ 214 (432)
|.|.+|-.. + . ...+.+. |...|..++|++++.++++ |+.+++||+..|+....+..|.
T Consensus 87 -g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 87 -GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred -ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccc
Confidence 999999755 2 1 1223333 8899999999999999984 9999999999999999999999
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee------ee--------------ccC----CceeEEEEcCCC
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF------IM--------------AHD----SRIACFALTQDG 270 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~------~~--------------~~~----~~i~~~~~sp~~ 270 (432)
+-+..++|.|.+.++... +.|...+.+.+....+.. +. -|+ .-...++|+|+|
T Consensus 166 ~yvqgvawDpl~qyv~s~---s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG 242 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQYVASK---SSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG 242 (434)
T ss_pred cccceeecchhhhhhhhh---ccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC
Confidence 999999999988755332 255556665554421100 00 011 124567899999
Q ss_pred CEEEEEcC----CCc----eEEEEECCCC-ceEEEEEeCCCcCceEEEEECC------------------CCCEEEEEeC
Q 014007 271 QLLATSST----KGT----LVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSS------------------NAQWLAVSSD 323 (432)
Q Consensus 271 ~~l~~~~~----dg~----~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~------------------~~~~l~~~~~ 323 (432)
.+|++.+. .+. ..++|+-+.. ++...+.. ...+...+.|+| -+-.+|.++
T Consensus 243 ~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~--~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt- 319 (434)
T KOG1009|consen 243 SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS--PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT- 319 (434)
T ss_pred cEEEcccceeeeCCceeeceeEeeccccccCceeecCC--CCcceEEEEeeeeEEEeccccccccccccccceEEEEee-
Confidence 99987542 222 0355653322 12222221 123344444443 223455555
Q ss_pred CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007 324 KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS 403 (432)
Q Consensus 324 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 403 (432)
.+.|+|||.++..++ ...-..|-..|+.++|++||..|+..+.||.
T Consensus 320 ~~svyvydtq~~~P~----------------------------------~~v~nihy~~iTDiaws~dg~~l~vSS~DGy 365 (434)
T KOG1009|consen 320 KNSVYVYDTQTLEPL----------------------------------AVVDNIHYSAITDIAWSDDGSVLLVSSTDGF 365 (434)
T ss_pred cceEEEeccccccce----------------------------------EEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence 567999999887642 1223456667999999999999999999999
Q ss_pred EEEEEecCCCCC
Q 014007 404 FYRCQFDPVNGG 415 (432)
Q Consensus 404 v~iw~~~~~~~~ 415 (432)
.-+-.+++.+-+
T Consensus 366 CS~vtfe~~elg 377 (434)
T KOG1009|consen 366 CSLVTFEPWELG 377 (434)
T ss_pred eEEEEEcchhcc
Confidence 998888765444
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.3e-20 Score=160.08 Aligned_cols=266 Identities=10% Similarity=0.123 Sum_probs=192.1
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee--
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-- 173 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-- 173 (432)
++++.+.+.++|||+..........- ......+..+.|.... +.+++.+.| ..|++|. +.|+ .+....
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~-~t~~pg~~s~~w~~~n~lvvas~~gd-----k~~~~~~-K~g~~~~Vp~~~k~ 77 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVH-QTAEPGDFSFNWQRRNFLVVASMAGD-----KVMRIKE-KDGKTPEVPRVRKL 77 (673)
T ss_pred eeeeccCCceEEeecccccCcccccc-CCCCCcceeeeccccceEEEeecCCc-----eeEEEec-ccCCCCccceeecc
Confidence 45555566799999865443311110 0123347888887765 666777777 8999997 3343 122222
Q ss_pred cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007 174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (432)
Q Consensus 174 ~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 250 (432)
....-.|++......++++ .+.|+|||++...+.+.++.|...|+++.+.....+++- ++..|.|.|..+.++.
T Consensus 78 ~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAs---vs~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 78 TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIAS---VSDGGDIIIHGTKTKQ 154 (673)
T ss_pred ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEE---eccCCcEEEEecccCc
Confidence 2334556666566677775 679999999976677778899999999998888775543 4467999999998866
Q ss_pred eeeeeccC--CceeEEEEcCCCC-EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCe
Q 014007 251 TKFIMAHD--SRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGT 326 (432)
Q Consensus 251 ~~~~~~~~--~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~ 326 (432)
..+...|. ..|.-+.|+|..+ +|.+++.+|. |.+||+....++..+.. .|..+...|+|+|.. .+|++.+.|..
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~l~vsVG~Dkk 232 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEALLVSVGYDKK 232 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCccceEEEecccce
Confidence 55444443 4567899999765 4567888999 99999987777766654 388999999999965 57788899999
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007 327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYR 406 (432)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 406 (432)
|.+||+...+....+ .-+.+.+.|+|+++|.+|+.|+..|.|+.
T Consensus 233 i~~yD~~s~~s~~~l------------------------------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 233 INIYDIRSQASTDRL------------------------------------TYSHPLSTVAFSECGTYLCAGNSKGELIA 276 (673)
T ss_pred EEEeeccccccccee------------------------------------eecCCcceeeecCCceEEEeecCCceEEE
Confidence 999999976632211 12346889999999999999999999999
Q ss_pred EEecCC
Q 014007 407 CQFDPV 412 (432)
Q Consensus 407 w~~~~~ 412 (432)
|++...
T Consensus 277 YD~R~~ 282 (673)
T KOG4378|consen 277 YDMRST 282 (673)
T ss_pred EecccC
Confidence 998553
No 163
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=4.8e-19 Score=152.64 Aligned_cols=229 Identities=16% Similarity=0.149 Sum_probs=170.6
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCce---e----------------EE--e-ecCCceEEEEEecCccEE-Ee---C
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRC---I----------------GE--L-SFRSEVRSVKLRRDRIIV-VL---E 193 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~---~----------------~~--~-~~~~~v~~~~~~~~~~~~-~~---d 193 (432)
.++++|.|..+ ..|.|||+.-... . +. - .|...|.+++|+..-+-+ ++ |
T Consensus 191 ~gNyvAiGtmd-----p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMD-----PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccC-----ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC
Confidence 46789999988 8999999742110 0 00 1 166677888898875544 43 8
Q ss_pred CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC-C
Q 014007 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-Q 271 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~-~ 271 (432)
.+|++||+.++++...+..|.+.|..+.|+|.....++ +|+.|++|.+.|.+. ......-...+.|..++|.|.. .
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LL--sGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~ 343 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLL--SGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSEN 343 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEE--eccccceEEeeeccCccccCceEEeccceEEEEecCCCce
Confidence 89999999999999999999999999999999876654 477999999999995 2222222346789999999854 5
Q ss_pred EEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007 272 LLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (432)
.++++..||+ |+-+|+|.. +++.+++. |.++|.++++++.- .+|++++.|+.|++|++..........
T Consensus 344 ~f~~~tddG~-v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~------- 413 (463)
T KOG0270|consen 344 SFFVSTDDGT-VYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE------- 413 (463)
T ss_pred eEEEecCCce-EEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-------
Confidence 6778889999 999999975 88888885 67899999998854 468889999999999998655211000
Q ss_pred CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecC
Q 014007 350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~ 411 (432)
..++ -+...|.++.|+- -+|+.|+..+.++||++-.
T Consensus 414 ------------------------~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~ 450 (463)
T KOG0270|consen 414 ------------------------HSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT 450 (463)
T ss_pred ------------------------cccc--ccceeecccCCCcceEEEecCccceEEEeeccc
Confidence 0010 1224556666643 4688899999999999844
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=4.7e-19 Score=144.60 Aligned_cols=303 Identities=16% Similarity=0.190 Sum_probs=198.4
Q ss_pred CCEEEEEc-----CCcEEEEEcCCCeeE-EEeecccCcceeEEEEeeeCC-eEEEecCCCCCCC--CCCeEEEEeCCCC-
Q 014007 97 HGCFAAGT-----DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQY--PLNKVMIWDDHQS- 166 (432)
Q Consensus 97 ~~~l~~~~-----~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~--~~~~v~iwd~~~~- 166 (432)
.-.|.+|+ ++.|.+.+++..... ..+.|. ++...|+.++-+|- ...|+++-.+..- ....+.||.+...
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~-h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~ 104 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFF-HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPL 104 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhh-cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEeccccc
Confidence 33555664 555888877654433 334454 78889999988774 3444444332110 0135789987543
Q ss_pred --------ceeEEee--cCCceEEEEEecCccEEE--eCCeEEEEEcCCCee-eEEEee-----ccCCcceEEEecCCCc
Q 014007 167 --------RCIGELS--FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKL-LHQIET-----IANPKGLCAVSQGVGS 228 (432)
Q Consensus 167 --------~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~ 228 (432)
+++..+. +-+.|.|+.|.|++..++ .|..|.+|++..+.. ...+.. +....+.-+|+|..+.
T Consensus 105 ~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 105 GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 2344444 456899999999988877 389999999988655 333321 2344556788885444
Q ss_pred EEEEeecCCCCcEEEEEccCCc-e-eeeeccCCceeEEEEcCCCC-EEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcC
Q 014007 229 LVLVCPGLQKGQVRVEHYASKR-T-KFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRA 304 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~-~-~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~ 304 (432)
..+++. .|+++..||+++.. . ..-.+|...|..+.|+|+.+ +|++|+.||. |+|||.+..+ ++.++.+ |..
T Consensus 185 nqv~tt--~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk~pv~el~~--HsH 259 (370)
T KOG1007|consen 185 NQVATT--SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTKFPVQELPG--HSH 259 (370)
T ss_pred ceEEEe--CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCCccccccCC--Cce
Confidence 444542 58999999999833 2 33458999999999999764 6889999999 9999998654 5666664 668
Q ss_pred ceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007 305 EIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (432)
Q Consensus 305 ~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 383 (432)
.|+++.|+|. .++|++|+.|..|.+|....-...+.+...-.........+..-.+ .+ ..-.+.++..|++.|
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~k-pL-----~dg~l~tydehEDSV 333 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVK-PL-----QDGQLETYDEHEDSV 333 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcc-cc-----cccccccccccccce
Confidence 9999999995 5678899999999999876544222211000000000000000000 00 011255788899999
Q ss_pred eEEEEcc-CCCEEEEEecCCeEEEEEecC
Q 014007 384 YIVAFGH-QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 384 ~~~~~s~-~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+++||. |.-.+|+-+.||++.|=++..
T Consensus 334 Y~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 9999998 555677899999999866543
No 165
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-20 Score=179.90 Aligned_cols=276 Identities=12% Similarity=0.168 Sum_probs=196.3
Q ss_pred EEEEcCCCC-EEEEEc-----------CCcEEEEEcCCCee----EEEeecccCcceeEEEEeeeCCeEE----EecCCC
Q 014007 90 HISFNQDHG-CFAAGT-----------DHGFRIYNCDPFRE----IFRRDFERGGGIGVVEMLFRCNILA----LVGGGP 149 (432)
Q Consensus 90 ~~~~s~~~~-~l~~~~-----------~~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~----~~s~~~ 149 (432)
.++|+|++. +||+|+ +..+-||.++.... .....+. .......++|.+.+.. +++|..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecccc
Confidence 478999987 666663 22255665532211 2223332 5567788899876654 889999
Q ss_pred CCCCCCCeEEEEeCCC---C---ceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEe--eccCC
Q 014007 150 DPQYPLNKVMIWDDHQ---S---RCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIE--TIANP 216 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~---~---~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~--~~~~~ 216 (432)
| |.|.+||... + ..+.++. |.+.|..+.|++... ++++ ||.|.|||+...+...... .....
T Consensus 89 d-----G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~e 163 (1049)
T KOG0307|consen 89 D-----GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSE 163 (1049)
T ss_pred C-----CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCccc
Confidence 8 9999999765 2 2344555 999999999999755 7774 8899999998754433331 13456
Q ss_pred cceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCC--ceeEEEEcCCC-CEEEEEcCCCc--eEEEEECCC
Q 014007 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFALTQDG-QLLATSSTKGT--LVRIFNTLD 290 (432)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~--~i~~~~~sp~~-~~l~~~~~dg~--~i~vwd~~~ 290 (432)
|.+++|+..-.++ ++ +++.+|.+.|||++.++ +..+..+.. .+..++|+|+. ..|++++.|.. .|.+||+|.
T Consensus 164 I~~lsWNrkvqhI-LA-S~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 164 IKCLSWNRKVSHI-LA-SGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ceEeccchhhhHH-hh-ccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 6677777665554 34 46689999999999853 334444433 47789999976 35666665542 299999986
Q ss_pred C-ceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007 291 G-TLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368 (432)
Q Consensus 291 ~-~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (432)
- ..++++.. |...|.++.|++.+ ++|++++.|++|.+|+.++++.+..
T Consensus 242 assP~k~~~~--H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~---------------------------- 291 (1049)
T KOG0307|consen 242 ASSPLKILEG--HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE---------------------------- 291 (1049)
T ss_pred cCCchhhhcc--cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee----------------------------
Confidence 4 45666653 77899999999966 8999999999999999999884322
Q ss_pred cceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecC
Q 014007 369 SEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~ 411 (432)
+....+.+..+.|+|... .+++++-||.|-||.+..
T Consensus 292 -------~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 292 -------LPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred -------cCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 223345677899999554 888899999999998854
No 166
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.6e-19 Score=148.53 Aligned_cols=271 Identities=14% Similarity=0.164 Sum_probs=189.9
Q ss_pred CEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-
Q 014007 98 GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS- 173 (432)
Q Consensus 98 ~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~- 173 (432)
..+|++..++ |+|||..+++.. ..++ ++...+..+.|.. ....+.+++.| |+|++||++.......+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssD-----G~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--EEFK-GPPATTNGVRFISCDSPHGVISCSSD-----GTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--heec-CCCCcccceEEecCCCCCeeEEeccC-----CeEEEEEeecchhhhheec
Confidence 4677776555 999999886655 5565 6777777777765 45667788888 999999999876655554
Q ss_pred --cC-CceEEEEEecCccEEEe-------CCeEEEEEcCCCee-eEEE-eeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 174 --FR-SEVRSVKLRRDRIIVVL-------EQKIFVYNFADLKL-LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 174 --~~-~~v~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+. .+..+++.+-.+.+++. +-.|.+||++..+. +..+ ..|.+.|+.+.|+|....+++ +|+.||.|
T Consensus 113 ~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLl--SGSvDGLv 190 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLL--SGSVDGLV 190 (376)
T ss_pred cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEE--eecccceE
Confidence 33 46677777655666652 66899999998665 4443 678999999999999888765 47799999
Q ss_pred EEEEccCC----ceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc----------Cce
Q 014007 242 RVEHYASK----RTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR----------AEI 306 (432)
Q Consensus 242 ~i~d~~~~----~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~----------~~i 306 (432)
.+||+... .+.....|...|.++.|+.++ +.|.+-+..++ ..+|+++.+.+...+...... ..+
T Consensus 191 nlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 191 NLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGSEETWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred EeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCChhhcccCccchhhhHHhhhhhhhe
Confidence 99999873 334455688889999999877 45788888888 999999998866555432100 111
Q ss_pred EEEEECCCCCEEEEEeC-CCeEEEEEecC---CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCC
Q 014007 307 YSLAFSSNAQWLAVSSD-KGTVHVFNLKV---NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEG 381 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 381 (432)
...-...++..++.++. -|...++-+.. +.... ..+.+.+ |..
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~--------------------------------~~a~l~g~~~e 317 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLT--------------------------------EPAILQGGHEE 317 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccC--------------------------------ccccccCCcHH
Confidence 11221224444544443 55555555442 22111 1223444 667
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.|.++.|...+..+.+||+||.+.+|..+-
T Consensus 318 iVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 318 IVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred HHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 889999998999999999999999999643
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=6.9e-19 Score=145.83 Aligned_cols=234 Identities=15% Similarity=0.142 Sum_probs=172.4
Q ss_pred EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--------------ceeEEeecCCceEEEEEe-------cCccEE
Q 014007 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--------------RCIGELSFRSEVRSVKLR-------RDRIIV 190 (432)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--------------~~~~~~~~~~~v~~~~~~-------~~~~~~ 190 (432)
...+.|+|||..+++...| ..+.+|++... .....+.....|..-+|- |+..++
T Consensus 52 ~kgckWSPDGSciL~~sed-----n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSED-----NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred hccceeCCCCceEEeeccc-----CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcccee
Confidence 3467799999999999999 99999987421 112222356778877775 455566
Q ss_pred Ee---CCeEEEEEcCCCeeeEEEeec--cC---CcceEEEecCCCcEEEEeecCCCCcEEEEEc-cCCc---eeee----
Q 014007 191 VL---EQKIFVYNFADLKLLHQIETI--AN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY-ASKR---TKFI---- 254 (432)
Q Consensus 191 ~~---d~~i~i~d~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~-~~~~---~~~~---- 254 (432)
++ +.-|++||.-+|+....+... .+ ...+++|+|||.+++ +| ....|++||+ +.++ ....
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf---aG-ykrcirvFdt~RpGr~c~vy~t~~~~ 202 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF---AG-YKRCIRVFDTSRPGRDCPVYTTVTKG 202 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe---ec-ccceEEEeeccCCCCCCcchhhhhcc
Confidence 53 778999999999887766542 22 234799999999775 34 7899999999 4332 1222
Q ss_pred -eccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEE
Q 014007 255 -MAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFN 331 (432)
Q Consensus 255 -~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd 331 (432)
.+..+-|.+++|+| +...++.|+.... +-|+.-..+.++..+.+ |.+.|+.++|.++|+.|.+|. .|-.|..||
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~-~giy~~~~~~pl~llgg--h~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQR-VGIYNDDGRRPLQLLGG--HGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccce-eeeEecCCCCceeeecc--cCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 23467799999999 5558999999888 88888778888877774 779999999999999999998 678899999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-CceE--EEEccCCCEEEEEecCCeEEEEE
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYI--VAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
++..+.. +..+..|.+ .-.. ....|++++|++|+.||.|++|+
T Consensus 280 iR~~~~p----------------------------------v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 280 IRYSRDP----------------------------------VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred ehhccch----------------------------------hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 9986522 111223322 1122 34468999999999999999999
Q ss_pred ecC
Q 014007 409 FDP 411 (432)
Q Consensus 409 ~~~ 411 (432)
+..
T Consensus 326 lk~ 328 (406)
T KOG2919|consen 326 LKD 328 (406)
T ss_pred cCC
Confidence 854
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-16 Score=150.58 Aligned_cols=288 Identities=20% Similarity=0.323 Sum_probs=216.9
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe-eEEEeecccCcceeEEEEee-eCCeE-EEec-CCCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLF-RCNIL-ALVG-GGPDPQYP 154 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~~~s-~~~d~~~~ 154 (432)
....|...|.++.|.+.+..++.++ ++.+.+|+..... .. ..+...+...+..+.+ .+++. .++. +..+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI--KSLEGLHDSSVSKLALSSPDGNSILLASSSLD---- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE--EEEeccCCCceeeEEEECCCcceEEeccCCCC----
Confidence 5678999999999999999988887 6669999987765 22 3333112235555555 66665 4444 3447
Q ss_pred CCeEEEEeCCC-CceeEEee-cCCceEEEEEecCccEEE--e--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 155 LNKVMIWDDHQ-SRCIGELS-FRSEVRSVKLRRDRIIVV--L--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 155 ~~~v~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~~~--~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
+.+.+|+... ......+. |...|..++|++++.+++ . |+.+++|++..+..+..+..|...+..++++|++.
T Consensus 134 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 211 (466)
T COG2319 134 -GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGG- 211 (466)
T ss_pred -ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcc-
Confidence 8999999987 66666666 999999999999997665 2 78999999998888888888899999999998887
Q ss_pred EEEEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce-EEEEEeCCCcCc
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAE 305 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~-~~~~~~~~~~~~ 305 (432)
.+++ +++.|+.|++||...+... .+..|.... ...|+|++.++++++.|+. +++||++.... +..+. .|...
T Consensus 212 ~~~~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~--~~~~~ 286 (466)
T COG2319 212 LLIA-SGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTLS--GHSSS 286 (466)
T ss_pred eEEE-EecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEEe--cCCcc
Confidence 2333 3458999999988864443 467787775 4489999999999999999 99999987765 44442 36789
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
+.++.|+|++..+++++.|+.+++||..+...... . ....|.+.+..
T Consensus 287 v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~--------------------------------~-~~~~~~~~~~~ 333 (466)
T COG2319 287 VLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS--------------------------------L-TLKGHEGPVSS 333 (466)
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEE--------------------------------e-eecccCCceEE
Confidence 99999999989888888889999998877652110 0 02356667888
Q ss_pred EEEccCCCEEEEE-ecCCeEEEEEecCCC
Q 014007 386 VAFGHQKNTVVIL-GMDGSFYRCQFDPVN 413 (432)
Q Consensus 386 ~~~s~~~~~l~~~-~~dg~v~iw~~~~~~ 413 (432)
+.|.+++..++.+ ..|+.+++|++....
T Consensus 334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9994333566655 678999998886643
No 169
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.6e-18 Score=150.06 Aligned_cols=242 Identities=15% Similarity=0.156 Sum_probs=172.1
Q ss_pred CcceeEEEEeeeCCe--EEEecCCCCCCCCCCeEEEEeCCCCc----eeEEee-cCCceEEEEEecCc--cEEE--eCCe
Q 014007 127 GGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDR--IIVV--LEQK 195 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~--~~~~--~d~~ 195 (432)
-+...|.+++|+|.. ..+++|+.. |.|-+||+.+.+ -+..+. |..+|.++.|+|.. +++. .||+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~-----G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKG-----GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCC-----CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 367789999998854 578888887 999999995322 233344 89999999999953 3333 4999
Q ss_pred EEEEEcCCCee--eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcC-CC
Q 014007 196 IFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQ-DG 270 (432)
Q Consensus 196 i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp-~~ 270 (432)
|++-|++.+.. +.........+..+.++.+...++++ ..=|.+.+||++.+. ...+.-|...|.+|+++| ..
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~---~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p 335 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFG---DNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP 335 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEe---ecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence 99999987543 22332233344556677776655543 245699999999843 455678899999999999 55
Q ss_pred CEEEEEcCCCceEEEEECCCCceEEE--EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec----CCCCCCCCCCC
Q 014007 271 QLLATSSTKGTLVRIFNTLDGTLLQE--VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK----VNSGSARSEPR 344 (432)
Q Consensus 271 ~~l~~~~~dg~~i~vwd~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~ 344 (432)
.+|||++.|++ ++|||++....... +..-.|...|.+..|||++-.|++.+.|..|+|||.. .......
T Consensus 336 ~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~---- 410 (498)
T KOG4328|consen 336 WFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT---- 410 (498)
T ss_pred hheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce----
Confidence 78999999999 99999986433221 3333488899999999998889999999999999985 1111100
Q ss_pred CCCCCCCCCCCceeEeecccce-eecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 345 STSDPTLPTSSLSFIKGVLPKY-FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
++.- ....| -.....+|.|+.+++++|..-..|-|++
T Consensus 411 ------------------I~Hn~~t~Rw---------lT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 ------------------IPHNNRTGRW---------LTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred ------------------eeccCccccc---------ccchhheeCCCccEEEEeccCcceeEEc
Confidence 0000 00000 0234568999999999999988899865
No 170
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=7.5e-19 Score=154.88 Aligned_cols=258 Identities=14% Similarity=0.170 Sum_probs=187.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEE-cCCCeeEEEeecccCcceeEE-EEee-------eCCeEEEecCCCCCC
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYN-CDPFREIFRRDFERGGGIGVV-EMLF-------RCNILALVGGGPDPQ 152 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~-~~~~~~~~~~~~~~~~~~~v~-~~~~-------~~~~~~~~s~~~d~~ 152 (432)
..|...|.|+.|+.+...+.+++|+.+.+|. +.+.... ...+. ...+. .+.. ......++.++.|
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~-~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~s~D-- 84 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVE-VAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLICSND-- 84 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhh-hhhCC---cccCCccccccccccCCCCCcceEEEEcCC--
Confidence 3577788899999999888888888855554 4322211 11111 11111 1111 1122345555556
Q ss_pred CCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 153 YPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
|.+.+.+ +.++..+.+. |.+.+.+-.|++||.-+.+ ||.|++|. ++|-...++-....++.+++|.|+.+.
T Consensus 85 ---Gkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~ 159 (737)
T KOG1524|consen 85 ---GRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNS 159 (737)
T ss_pred ---ceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCc
Confidence 9999988 6777777777 9999999999999988774 99999999 566555555556678999999999988
Q ss_pred EEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 229 LVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+++ |.| +.+.|-.+.. ..+....+|++-|.++.|++..+++++|++|-. .+|||. -|+.+..-. .|+.+|+
T Consensus 160 vl~-c~g---~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~-~G~~Lf~S~--~~ey~IT 231 (737)
T KOG1524|consen 160 IVF-CQG---GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDA-QGANLFTSA--AEEYAIT 231 (737)
T ss_pred eEE-ecC---CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeecc-cCcccccCC--hhcccee
Confidence 754 333 6777766655 456678899999999999999999999999999 999994 566654443 4778999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
+++|.|+ +.++.++. +++++=.. ..|.|..++
T Consensus 232 Sva~npd-~~~~v~S~-nt~R~~~p----------------------------------------------~~GSifnls 263 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTARFSSP----------------------------------------------RVGSIFNLS 263 (737)
T ss_pred eeeeccc-cceeeeee-eeeeecCC----------------------------------------------CccceEEEE
Confidence 9999999 66666653 34442111 124588999
Q ss_pred EccCCCEEEEEecCCeEEE
Q 014007 388 FGHQKNTVVILGMDGSFYR 406 (432)
Q Consensus 388 ~s~~~~~l~~~~~dg~v~i 406 (432)
||+||..++.|+..|.+.+
T Consensus 264 WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 264 WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EcCCCceeeccccCceEEE
Confidence 9999999999999998765
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.9e-18 Score=155.33 Aligned_cols=246 Identities=14% Similarity=0.136 Sum_probs=170.5
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~ 156 (432)
.....|.+.|..+.|-|-...|++++ |.++++||++..+..-...+. +|...+.+++|.+. -..|++|+.| |
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~-GH~~SvkS~cf~~~n~~vF~tGgRD-----g 167 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL-GHTGSVKSECFMPTNPAVFCTGGRD-----G 167 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec-ccccccchhhhccCCCcceeeccCC-----C
Confidence 45567999999999999545666666 667999999988877554454 89999999999875 5678899999 9
Q ss_pred eEEEEeCCCCc--------------------eeE-------Eee-cCCceEE---EEEecCccEEEe----CCeEEEEEc
Q 014007 157 KVMIWDDHQSR--------------------CIG-------ELS-FRSEVRS---VKLRRDRIIVVL----EQKIFVYNF 201 (432)
Q Consensus 157 ~v~iwd~~~~~--------------------~~~-------~~~-~~~~v~~---~~~~~~~~~~~~----d~~i~i~d~ 201 (432)
.|.|||+.-.. ..+ .-. +...|.+ +.+..|...|++ |+.|++||+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 99999975321 000 001 2333444 445566666662 899999999
Q ss_pred CCCeeeEE--------Eeec---cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce---eeeeccCC---ceeEE
Q 014007 202 ADLKLLHQ--------IETI---ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHDS---RIACF 264 (432)
Q Consensus 202 ~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~---~i~~~ 264 (432)
++...... +..+ ...+..+.....|.+++..| .|+.|++|++.+..+ ..+.++.. .+.+
T Consensus 248 Rk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks- 323 (720)
T KOG0321|consen 248 RKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS- 323 (720)
T ss_pred cccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEeccccCcCchhhccCcccceeeeee-
Confidence 97543221 1111 11233455555567665444 699999999988333 33333322 1222
Q ss_pred EEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCC
Q 014007 265 ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 265 ~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~ 336 (432)
..+|++.+|++|+.|.. .++|.+.+.+.--.+..+ |...|++++|.|.. .-++++++|.+++||++..+-
T Consensus 324 ~lSpd~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLG-HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ecCCCCceEeccCCCcc-eeeeeecCccCChhhhhC-cceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 36899999999999999 999999887654444433 67889999998742 346677999999999996654
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=3.2e-17 Score=134.08 Aligned_cols=278 Identities=14% Similarity=0.201 Sum_probs=197.4
Q ss_pred CCCeEEEEEcC--CC-CEEEEEc-----CCcEEEEEcC--CCeeEEEeecccCcceeEEEEeeeCCeE-----EEecCCC
Q 014007 85 PPTLLHISFNQ--DH-GCFAAGT-----DHGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNIL-----ALVGGGP 149 (432)
Q Consensus 85 ~~~v~~~~~s~--~~-~~l~~~~-----~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~s~~~ 149 (432)
.-.++++.|+. +. .+||.|+ .+.|.|..++ +++......+. |...++.+.|.|+.. .+++++
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLATs~- 120 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLATSS- 120 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhhccc-
Confidence 45688899983 33 3788887 3447776654 44545445554 889999999988763 566666
Q ss_pred CCCCCCCeEEEEeCCCC--ce--eEE------eecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCe---eeEEEee
Q 014007 150 DPQYPLNKVMIWDDHQS--RC--IGE------LSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLK---LLHQIET 212 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~--~~--~~~------~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~---~~~~~~~ 212 (432)
..+++|.+... +. ... -.+..++++..|+. +-+++.+ |-+..|||++++. ....+-.
T Consensus 121 ------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 121 ------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred ------CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 57999998742 11 111 12677899999987 4555552 8999999999863 3556778
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee----ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEE
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd 287 (432)
|...|..++|...+..++ ++.| .||.|++||++.....++. ....+...++|++ |-+++|+-..|...|.|.|
T Consensus 195 HDKEV~DIaf~~~s~~~F-ASvg-aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVF-ASVG-ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred cCcceeEEEeccCccceE-EEec-CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 999999999999776654 5445 7999999999985544331 2245788899987 5678898888776699999
Q ss_pred CCCC-ceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007 288 TLDG-TLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (432)
Q Consensus 288 ~~~~-~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (432)
++.. ..+.++++ |.+.|+.++|.|. ...|+++++|..+.|||+...-..... + |
T Consensus 273 iR~P~tpva~L~~--H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~-----------d----------P- 328 (364)
T KOG0290|consen 273 IRVPCTPVARLRN--HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE-----------D----------P- 328 (364)
T ss_pred ecCCCcceehhhc--CcccccceEecCCCCceeeecCCcceEEEEecccccccCCC-----------C----------c-
Confidence 9864 56777775 7799999999995 468999999999999999875421100 0 0
Q ss_pred eeecceeeEEEEecCCCceEEEEcc-CCCEEEEEecCCeEEE
Q 014007 366 YFSSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILGMDGSFYR 406 (432)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~v~i 406 (432)
+.... .++.|+.+.|++ .+.+++.+. +.++.|
T Consensus 329 -------ilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 329 -------ILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred -------hhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 11111 345699999997 667887665 334444
No 173
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.2e-17 Score=142.48 Aligned_cols=249 Identities=16% Similarity=0.174 Sum_probs=179.3
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcC--------C------CeeEEEeecccCcceeEEEEeeeCCeE
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCD--------P------FREIFRRDFERGGGIGVVEMLFRCNIL 142 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~--------~------~~~~~~~~~~~~~~~~v~~~~~~~~~~ 142 (432)
...+..|...|+++.|+|+|.+||+|+|++ |.+|... + ......+.+. +|...+..++|++++.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAWSPDSN 136 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhccCCCc
Confidence 367888999999999999999999999888 9999865 2 1123334454 7899999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe-------
Q 014007 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE------- 211 (432)
Q Consensus 143 ~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~------- 211 (432)
++++++-| ..+++||+..|+.+..+. |...+..++|.|-++++++ |...+.+.+...+.++...
T Consensus 137 ~l~s~s~d-----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~ 211 (434)
T KOG1009|consen 137 FLVSGSVD-----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK 211 (434)
T ss_pred eeeeeecc-----ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence 99999999 999999999999999988 9999999999999998883 5555566554332222111
Q ss_pred --------------e--ccCCcceEEEecCCCcEEEEeecC--CCCc-----EEEEEccC--CceeeeeccCCceeEEEE
Q 014007 212 --------------T--IANPKGLCAVSQGVGSLVLVCPGL--QKGQ-----VRVEHYAS--KRTKFIMAHDSRIACFAL 266 (432)
Q Consensus 212 --------------~--~~~~~~~~~~~~~~~~~~~~~~g~--~d~~-----i~i~d~~~--~~~~~~~~~~~~i~~~~~ 266 (432)
. .......++|+|+|..++.- +|. ..+. .++|+-.. .+...+.....+...+.|
T Consensus 212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP-ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~ 290 (434)
T KOG1009|consen 212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP-AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRF 290 (434)
T ss_pred ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc-cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEe
Confidence 0 01123457888888644321 111 1122 23333221 223334444445555555
Q ss_pred cC------------------CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007 267 TQ------------------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328 (432)
Q Consensus 267 sp------------------~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 328 (432)
+| .+..+|.++.+. |+|||..+..++.....- |-..|+.++|++||..|+..+.||...
T Consensus 291 ~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~s--vyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 291 SPVYYELRPLSSEKFLFVLPYRLVFAIATKNS--VYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred eeeEEEeccccccccccccccceEEEEeecce--EEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceE
Confidence 44 334567777775 899999998888777654 668999999999999999999999988
Q ss_pred EEEecCCC
Q 014007 329 VFNLKVNS 336 (432)
Q Consensus 329 iwd~~~~~ 336 (432)
+--++..+
T Consensus 368 ~vtfe~~e 375 (434)
T KOG1009|consen 368 LVTFEPWE 375 (434)
T ss_pred EEEEcchh
Confidence 88777665
No 174
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=1e-16 Score=150.07 Aligned_cols=219 Identities=13% Similarity=0.058 Sum_probs=151.9
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..|++||..... .+.+. +...+...+|+|||..++. +..|++||+.+++... +..........+|+|||+.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCE
Confidence 689999976544 44444 7788999999999998873 2369999998875422 2222233446899999998
Q ss_pred EEEEeecCCCCcEEE--EEccCCceeeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCC-ceEEEEEeCCCcC
Q 014007 229 LVLVCPGLQKGQVRV--EHYASKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDG-TLLQEVRRGADRA 304 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i--~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~-~~~~~~~~~~~~~ 304 (432)
++++. ..+|.+.| ||+.++....+..+...+....|+|||+.|+..+ .++. ..||++... .....+ . +..
T Consensus 262 La~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~--~~~ 335 (429)
T PRK01742 262 LAFAS--SKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-G--GRG 335 (429)
T ss_pred EEEEE--ecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-c--CCC
Confidence 76653 34665555 5666677777777777888999999999877655 5677 788876432 222233 2 222
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
....|+|||++|+.++.++ +.+||+.+++.. .+..+ ....
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~------------------------------------~lt~~-~~~~ 375 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTE------------------------------------VLSST-FLDE 375 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE------------------------------------EecCC-CCCC
Confidence 4578999999998887765 666999877521 01101 1134
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 385 IVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
.+.|+|||++|+.++.+|.+.+|.+....|+...++..
T Consensus 376 ~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 376 SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 57899999999999999999988875555665555543
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=5.8e-18 Score=138.27 Aligned_cols=247 Identities=14% Similarity=0.128 Sum_probs=182.8
Q ss_pred CcccCCCCCCCeEEEEEcCCC-CEEEEEcC----C----cEEEEEcCCCeeE-------EEeecccCcceeEEEEeeeCC
Q 014007 77 AESTSSSPPPTLLHISFNQDH-GCFAAGTD----H----GFRIYNCDPFREI-------FRRDFERGGGIGVVEMLFRCN 140 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~----~----~i~iw~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~ 140 (432)
...+...|.+.|..++-+|-. ++|+++.. . ++.||.+...... ....+...+-..+.++.|.|+
T Consensus 55 ~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 55 LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 346677789999999999954 56776642 2 2789998532211 112222234458899999999
Q ss_pred eEEEecCCCCCCCCCCeEEEEeCCCCce-eEEee------cCCceEEEEEec--CccEEEe--CCeEEEEEcCCCeeeEE
Q 014007 141 ILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS------FRSEVRSVKLRR--DRIIVVL--EQKIFVYNFADLKLLHQ 209 (432)
Q Consensus 141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~-~~~~~------~~~~v~~~~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~ 209 (432)
+..+++-.+ ..|.+|++..+.. +..+. +....++-+|+| ++..+++ |+++..||+++.+....
T Consensus 135 s~klasm~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~s 208 (370)
T KOG1007|consen 135 SDKLASMDD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNS 208 (370)
T ss_pred CCeeEEecc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcc
Confidence 998888774 7999999988765 44433 355677888998 6777773 89999999999877666
Q ss_pred E-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEE
Q 014007 210 I-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI 285 (432)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~v 285 (432)
+ ..|...+..+.|.|+....+ +++| .||.|++||.+. ..+..+.+|..+|.++.|+| ..+++++|+.|.. |.+
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~l-vt~g-DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~L 285 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHIL-VTCG-DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA-VNL 285 (370)
T ss_pred hhhhhcceeeeccCCCCceEEE-EEcC-CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce-eEE
Confidence 6 45777788899999977654 4434 899999999998 56778899999999999999 4567889999999 999
Q ss_pred EECCCC-----------------------------ceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecC
Q 014007 286 FNTLDG-----------------------------TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 286 wd~~~~-----------------------------~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 334 (432)
|....- ..+.++.. |+..|++++||.-.. .||+-+.||++.|=.+..
T Consensus 286 sca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 286 SCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred EeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 865321 12234443 678999999987655 567788999998876654
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=6e-18 Score=152.98 Aligned_cols=245 Identities=16% Similarity=0.205 Sum_probs=186.8
Q ss_pred CCCCCCCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC
Q 014007 71 MPLPSPAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP 149 (432)
Q Consensus 71 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~ 149 (432)
++......+.+.+|.+.|+|++|+.||+.+|+|+ |+.|.+|+-.-. .. ..+ .|+..|.+|.|+|-...+++++-
T Consensus 39 D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~--LkY--SH~D~IQCMsFNP~~h~LasCsL 113 (1081)
T KOG1538|consen 39 DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GI--LKY--SHNDAIQCMSFNPITHQLASCSL 113 (1081)
T ss_pred eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-ce--eee--ccCCeeeEeecCchHHHhhhcch
Confidence 4444556688999999999999999999999998 555999974321 11 233 49999999999999999999886
Q ss_pred CCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe---eccCCcceEEEe
Q 014007 150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE---TIANPKGLCAVS 223 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~ 223 (432)
...-+|.... +.+...+....+.+.+|..||++++. +|+|.+-+- +++..-.++ +...++..++|+
T Consensus 114 ------sdFglWS~~q-K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~ 185 (1081)
T KOG1538|consen 114 ------SDFGLWSPEQ-KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWN 185 (1081)
T ss_pred ------hhccccChhh-hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEec
Confidence 5788998544 33444445678889999999999993 999999874 444433443 356788899999
Q ss_pred cCCC---cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007 224 QGVG---SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (432)
Q Consensus 224 ~~~~---~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~ 300 (432)
|... .-+++.. ....++.+|.+.+..+..-..-.-...|+.+.++|.+++.|+.|+. +++|- +.|-.+.++..
T Consensus 186 p~sg~G~~di~aV~-DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg~- 261 (1081)
T KOG1538|consen 186 PSSGEGRNDILAVA-DWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVGE- 261 (1081)
T ss_pred CCCCCCccceEEEE-eccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeeccc-
Confidence 8743 1122221 2556666776666554444444556789999999999999999999 99995 78877777764
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
....|+.++..|++++++.|+.||+|..|++-
T Consensus 262 -~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 262 -QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred -cceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 45799999999999999999999999999864
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=7.2e-19 Score=162.57 Aligned_cols=290 Identities=11% Similarity=0.183 Sum_probs=209.1
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.-+.+|-++|+|+.|...|.++++|+|+. ++||..++..+. ..+. ||...+.+++.+.+...+++++.| ..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l--As~r-Ghs~ditdlavs~~n~~iaaaS~D-----~v 255 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL--ASCR-GHSGDITDLAVSSNNTMIAAASND-----KV 255 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh--ccCC-CCccccchhccchhhhhhhhcccC-----ce
Confidence 45778999999999999999999999777 999998877766 6676 899999999999999999999999 99
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEE----ee-ccCCcceEEEecCCCcEE
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI----ET-IANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~ 230 (432)
|++|-+.++.++..+. |.+.|++++|+|-. .. .||++++||.+ ...+... +. ....+-.+.+...+...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f- 331 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRF- 331 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCccc--cCCCCCceEecccc-ccccccCCCCCCcccccceeeeecccccccc-
Confidence 9999999999999998 99999999999965 11 38999999987 1111111 00 11222233333333322
Q ss_pred EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
. +|+.|+.-..|.+... ..+...+.-+.++.+- .+.+++-.+-. +++|++.+|.+++.+.+ |...+..+
T Consensus 332 -~-Tgs~d~ea~n~e~~~l-----~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvL 401 (1113)
T KOG0644|consen 332 -L-TGSRDGEARNHEFEQL-----AWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVL 401 (1113)
T ss_pred -c-cccCCcccccchhhHh-----hhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeee
Confidence 2 3456676666654331 1122222222222222 45566666767 99999999999988886 55788999
Q ss_pred EECCCCCEE-EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007 310 AFSSNAQWL-AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF 388 (432)
Q Consensus 310 ~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (432)
.++|-...+ .+++.||...|||+-.+..++.. ..+| +.+...+|
T Consensus 402 d~Hpfn~ri~msag~dgst~iwdi~eg~pik~y----------------------------------~~gh-~kl~d~kF 446 (1113)
T KOG0644|consen 402 DVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY----------------------------------FIGH-GKLVDGKF 446 (1113)
T ss_pred eecCCCcHhhhhccCCCceEeeecccCCcceee----------------------------------eccc-ceeecccc
Confidence 999965544 47889999999999988754321 1233 34667899
Q ss_pred ccCCCEEEEEecCCeEEEEEecCCCCCcceEeeecccCC
Q 014007 389 GHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLK 427 (432)
Q Consensus 389 s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~ 427 (432)
|+||..++....-|.++|.. ...++-....+..+|+-
T Consensus 447 Sqdgts~~lsd~hgql~i~g--~gqs~s~k~ak~dqffl 483 (1113)
T KOG0644|consen 447 SQDGTSIALSDDHGQLYILG--TGQSKSQKKAKYDQFFL 483 (1113)
T ss_pred CCCCceEecCCCCCceEEec--cCCCccccccccceEee
Confidence 99999999999999999954 45555555566665553
No 178
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-16 Score=147.35 Aligned_cols=295 Identities=14% Similarity=0.196 Sum_probs=203.9
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
.....|...++|.++||+++++|+|..+| |.+|.--. ........+ .-|...|.++.|+.+|.++.+|+..
T Consensus 199 ~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l-HWH~~~V~~L~fS~~G~~LlSGG~E----- 272 (792)
T KOG1963|consen 199 DITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL-HWHHDEVNSLSFSSDGAYLLSGGRE----- 272 (792)
T ss_pred hhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE-EecccccceeEEecCCceEeecccc-----
Confidence 34445777799999999999999998555 99997422 111111233 3588899999999999999999999
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeec-----------cCCcceE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETI-----------ANPKGLC 220 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~-----------~~~~~~~ 220 (432)
+.+.+|.+.+++ .+-+. ..++|..+.++||+.+.+ .|+.|.+....+......+.+. .+-.+.+
T Consensus 273 ~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~ 351 (792)
T KOG1963|consen 273 GVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGV 351 (792)
T ss_pred eEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeE
Confidence 999999999988 33333 789999999999998776 3999999988765544444332 2234567
Q ss_pred EEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeee-----------ccCCceeEEEEcCCCCEEEEEcC--------CC
Q 014007 221 AVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM-----------AHDSRIACFALTQDGQLLATSST--------KG 280 (432)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~-----------~~~~~i~~~~~sp~~~~l~~~~~--------dg 280 (432)
+++|..+.+++ .| ..|.|.+||+-+.. +..+. .+.-.++.++.+-.|.+++|.-. ||
T Consensus 352 ~idpr~~~~vl--n~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 352 SIDPRTNSLVL--NG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred EEcCCCCceee--cC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 88885554433 33 78999999987732 22221 12335778888888999988642 32
Q ss_pred c-eEEEEECCCC----ceEEEEEeCCCcCceEEEEE-CCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 281 T-LVRIFNTLDG----TLLQEVRRGADRAEIYSLAF-SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 281 ~-~i~vwd~~~~----~~~~~~~~~~~~~~i~~~~~-s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
. .+++|-.... .+...+... |...+...++ ++... ..++++.||.++||-+...+.+...
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~P-H~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~------------ 495 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNP-HGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK------------ 495 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecC-CCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC------------
Confidence 2 2788965433 233334433 5554444444 44333 7889999999999999776643221
Q ss_pred CCceeEeecccceeecceeeE-EEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 354 SSLSFIKGVLPKYFSSEWSVA-QFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
...|... .-..|..++.+++|+.||..| +.+.|+.|.||+.+.
T Consensus 496 --------------~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 496 --------------SSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDT 539 (792)
T ss_pred --------------ccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence 2234322 222477789999999999655 567788999999876
No 179
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=3.6e-17 Score=133.84 Aligned_cols=237 Identities=11% Similarity=0.128 Sum_probs=166.2
Q ss_pred CCCCCCeEEEEEcCCCC----EEEEEcCCcEEEEEcCCCee--EEEeecc----cCcceeEEEEeeeC-CeEEEecCCCC
Q 014007 82 SSPPPTLLHISFNQDHG----CFAAGTDHGFRIYNCDPFRE--IFRRDFE----RGGGIGVVEMLFRC-NILALVGGGPD 150 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~----~l~~~~~~~i~iw~~~~~~~--~~~~~~~----~~~~~~v~~~~~~~-~~~~~~s~~~d 150 (432)
..|.-+++.+.|.|+.. -|.+.+++.+|+|.+...+. .....+. ..+...++++.|+. +-.++.+++-|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 56889999999999874 24444566799999864222 1111121 23556788888865 55678888888
Q ss_pred CCCCCCeEEEEeCCCCce---eEEe-ecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeecc---CCcce
Q 014007 151 PQYPLNKVMIWDDHQSRC---IGEL-SFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIA---NPKGL 219 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~~~---~~~~-~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~---~~~~~ 219 (432)
.+..|||++++.. ...+ .|...|..++|...+.-++ .||.|++||++..+.-..+.... .+...
T Consensus 173 -----TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 173 -----TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLR 247 (364)
T ss_pred -----CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCccee
Confidence 9999999998732 2333 3999999999999776554 39999999999865444433322 23344
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCc----
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT---- 292 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~---- 292 (432)
++|++...++ +++-......|.|.|++. ..+..+.+|.+.|+.++|.| ....|++++.|.. +-+||+...-
T Consensus 248 LswnkqDpny-mATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q-aliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 248 LSWNKQDPNY-MATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ-ALIWDLQQMPRENG 325 (364)
T ss_pred eccCcCCchH-HhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcce-EEEEecccccccCC
Confidence 5565544333 343344568899999998 55678899999999999999 4578999999998 9999997532
Q ss_pred --eEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEE
Q 014007 293 --LLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHV 329 (432)
Q Consensus 293 --~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i 329 (432)
++..+. ..+.|..+.|++ .+.+|+.+. ++++.|
T Consensus 326 ~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 326 EDPILAYT---AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred CCchhhhh---ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 222333 336899999996 566787775 444544
No 180
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=5.8e-17 Score=134.89 Aligned_cols=273 Identities=11% Similarity=0.088 Sum_probs=189.1
Q ss_pred EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007 91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG 170 (432)
Q Consensus 91 ~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~ 170 (432)
.+|||+|+++|+..+-.+.|-|.++.+.. +.+. --..|..+.|..+..+++++.. .++.|.+|++...+--.
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~--qlf~--cldki~yieW~ads~~ilC~~y----k~~~vqvwsl~Qpew~c 85 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLH--QLFL--CLDKIVYIEWKADSCHILCVAY----KDPKVQVWSLVQPEWYC 85 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHH--HHHH--HHHHhhheeeeccceeeeeeee----ccceEEEEEeecceeEE
Confidence 58999999999999888888887776544 2222 3456777888888877766542 23899999999888777
Q ss_pred Eee-cCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec----------
Q 014007 171 ELS-FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG---------- 235 (432)
Q Consensus 171 ~~~-~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------- 235 (432)
.+. ...++.+++|+|||+.+. .+-.|.+|.+.+.+... ++-.+..+..++|+++|+...+++--
T Consensus 86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 777 788999999999997776 27899999998866543 33334456789999999877665411
Q ss_pred -----------------------CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc
Q 014007 236 -----------------------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT 292 (432)
Q Consensus 236 -----------------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~ 292 (432)
-.+..+.+||.--.-........-.+..+.|+|.+++|++|+.|+. +||.+--+.+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~-lrvlnh~tWk 243 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQM-LRVLNHFTWK 243 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchh-hhhhceeeee
Confidence 0113344444322111111223356889999999999999999998 8875431110
Q ss_pred ------------------------------------------------------------eEEEEEeC----CCcCceEE
Q 014007 293 ------------------------------------------------------------LLQEVRRG----ADRAEIYS 308 (432)
Q Consensus 293 ------------------------------------------------------------~~~~~~~~----~~~~~i~~ 308 (432)
.+..++.. .....+..
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 11111100 01235777
Q ss_pred EEECCCCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007 309 LAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (432)
Q Consensus 309 ~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (432)
++|++|..++++-. .-+.+.+||++..+. +.+-....+|...
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l------------------------------------~avLiQk~piraf 367 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKL------------------------------------HAVLIQKHPIRAF 367 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhh------------------------------------hhhhhhccceeEE
Confidence 99999999998875 346799999998762 1122233468999
Q ss_pred EEccCCCEEEEEecCCeEEEEEe
Q 014007 387 AFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 387 ~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
.|.|....|+.+.....+|+|..
T Consensus 368 ~WdP~~prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKSRLYFWAP 390 (447)
T ss_pred EeCCCCceEEEEcCCceEEEEcC
Confidence 99999889998888888888875
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=2.5e-15 Score=140.37 Aligned_cols=213 Identities=13% Similarity=0.052 Sum_probs=146.9
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
..|.+||...........+...+...+|+|||+.++. +..|++|++.+++... +...........|+|||+.+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEE
Confidence 5799999765554443447778999999999988873 3479999998875432 22233445578999999988
Q ss_pred EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-Cc-eEEEEECCCCceEEEEEeCCCcCceE
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~-~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+++.....+..|++||+.++....+..+...+....|+|||+.|+..+.+ +. .|+++|+.+++.. .+.. ......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~ 334 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQ 334 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCcc
Confidence 77643222346889999988777777666678899999999988777654 33 1556677666543 3332 223456
Q ss_pred EEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 308 SLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
...|+|||++|+..+.+ ..|++||+.+++. ..+.. .....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~------------------------------------~~Lt~-~~~~~ 377 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV------------------------------------QVLTD-TFLDE 377 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe------------------------------------EEeCC-CCCCC
Confidence 78999999999876543 3588889877651 11111 11234
Q ss_pred EEEEccCCCEEEEEecCCe---EEEEEe
Q 014007 385 IVAFGHQKNTVVILGMDGS---FYRCQF 409 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~---v~iw~~ 409 (432)
...|+|||++|+.++.++. ++++++
T Consensus 378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 378 TPSIAPNGTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 5789999999999998875 444444
No 182
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=2.2e-17 Score=137.33 Aligned_cols=239 Identities=15% Similarity=0.192 Sum_probs=172.9
Q ss_pred CCCCCCeEEEEEcCCC----CEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCC
Q 014007 82 SSPPPTLLHISFNQDH----GCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPL 155 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~----~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~ 155 (432)
..|....+.++|+-|- .+||+|+..| |+|.|+...+.. ..+. +|+..|..+.+.|.. +++++++.|
T Consensus 86 ~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~--~~~~-ghG~sINeik~~p~~~qlvls~SkD----- 157 (385)
T KOG1034|consen 86 EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS--KNYR-GHGGSINEIKFHPDRPQLVLSASKD----- 157 (385)
T ss_pred CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc--ccee-ccCccchhhhcCCCCCcEEEEecCC-----
Confidence 3577888888997542 3788887666 999998877655 5565 899999999999875 678899999
Q ss_pred CeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeE--------------------
Q 014007 156 NKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLH-------------------- 208 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~-------------------- 208 (432)
..|++|+++++.++..+. |...|.++.|+.+|.++++ |..|++|++...+...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 999999999999999986 8999999999999999995 8899999998422111
Q ss_pred --------EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cc-------------eeeeeccCCceeEE-
Q 014007 209 --------QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KR-------------TKFIMAHDSRIACF- 264 (432)
Q Consensus 209 --------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~-------------~~~~~~~~~~i~~~- 264 (432)
+-..|.+.|.++.|-- + ++.+ -+-++.|..|.... .. ...+.-....|.-+
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~g--d--~ilS-kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfir 312 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWFG--D--FILS-KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIR 312 (385)
T ss_pred ccccccccccccccchHHHHHHHh--h--heee-cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEE
Confidence 0112333333333332 2 2232 23567899997622 11 11222223344444
Q ss_pred -EEcCCCCEEEEEcCCCceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 265 -ALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 265 -~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+|.|-++.||.|...|. |++||++..... .++........|...+|+.||..|+..++|++|.-||..+
T Consensus 313 f~~d~~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 313 FAFDPWQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred EeecHHHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 55677899999999999 999999877653 2233222336799999999999999999999999998643
No 183
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.8e-17 Score=153.77 Aligned_cols=290 Identities=15% Similarity=0.179 Sum_probs=192.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecc--cCcceeEEEEeeeC--CeEEEecCCCCCCCCCC
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRC--NILALVGGGPDPQYPLN 156 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~ 156 (432)
.+....-..+.|+|-...++++.++. |++||.+.++.. ..|. ......|..+.+-. +...+.+++.| |
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d-----G 1133 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSD-----G 1133 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccC-----c
Confidence 33344566789999999999998665 999999877654 3332 12345677776643 45567788888 9
Q ss_pred eEEEEeCCCC-----ceeEEee--------cCCceEEEEEecC-ccEEEeC--CeEEEEEcCCCeeeEEEeecc-CCcce
Q 014007 157 KVMIWDDHQS-----RCIGELS--------FRSEVRSVKLRRD-RIIVVLE--QKIFVYNFADLKLLHQIETIA-NPKGL 219 (432)
Q Consensus 157 ~v~iwd~~~~-----~~~~~~~--------~~~~v~~~~~~~~-~~~~~~d--~~i~i~d~~~~~~~~~~~~~~-~~~~~ 219 (432)
.|+||+-... +.+.-.. ..+.-.-+.|... |.++++. ..|+|||.......+.+.... ..++.
T Consensus 1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence 9999974321 2222221 0111123456554 4444443 379999998887777765432 23333
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCC----ceeeeeccCCc--eeEEEEcCCCCE-EEEEcCCCceEEEEECCCCc
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSR--IACFALTQDGQL-LATSSTKGTLVRIFNTLDGT 292 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~~--i~~~~~sp~~~~-l~~~~~dg~~i~vwd~~~~~ 292 (432)
+.-+.....+ ++ +|..||.|++||.+.. .+.....|+.. |..+.+.+.|-- |++|+.||. |++||++...
T Consensus 1214 LS~~~~~gn~-i~-AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~ 1290 (1387)
T KOG1517|consen 1214 LSADLVHGNI-IA-AGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSS 1290 (1387)
T ss_pred ecccccCCce-EE-EeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCc
Confidence 3333333233 33 4678999999999873 35567788887 999999887654 999999999 9999999853
Q ss_pred eEEEEEeCCC---cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007 293 LLQEVRRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS 369 (432)
Q Consensus 293 ~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (432)
....+..-.| .+..+++..+++...+|+|+. +.|+||++...+. ..+ . ..+.+
T Consensus 1291 ~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~---------------k----~n~~F--- 1346 (1387)
T KOG1517|consen 1291 KETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NII---------------K----YNPGF--- 1346 (1387)
T ss_pred ccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-ccc---------------c----cCccc---
Confidence 2222221111 125899999999999999998 9999999976541 111 0 00000
Q ss_pred ceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 370 EWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+....+.+.+++|+|..-+||+|..|.+|.||..+.
T Consensus 1347 ------~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1347 ------MGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ------ccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 111224579999999999999999999999998744
No 184
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=5.4e-16 Score=140.82 Aligned_cols=236 Identities=11% Similarity=0.061 Sum_probs=158.8
Q ss_pred CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCCC-CCCCCCCeEEEE
Q 014007 86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIW 161 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~v~iw 161 (432)
+....++++|++++|+++. +++|.+|+++. +......... .......+.+++++..+++++. + +.|.+|
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~-----~~v~v~ 107 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNA-----NCVSVS 107 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCC-----CeEEEE
Confidence 4566789999999987765 45599999863 3332223222 2234567889999877766543 4 899999
Q ss_pred eCCCC-c---eeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeE-----EEee-ccCCcceEEEecCCC
Q 014007 162 DDHQS-R---CIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLH-----QIET-IANPKGLCAVSQGVG 227 (432)
Q Consensus 162 d~~~~-~---~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~ 227 (432)
++.+. . .+..+.+.....+++++|++++++. ++.|.+||+.+...+. .... .......+.|+|+++
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~ 187 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQ 187 (330)
T ss_pred EECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCC
Confidence 98643 2 2333334455778899999988762 6899999997633221 1111 123345789999999
Q ss_pred cEEEEeecCCCCcEEEEEccC--Ccee---eeecc------CCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCc---
Q 014007 228 SLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAH------DSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT--- 292 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~--~~~~---~~~~~------~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~--- 292 (432)
.++++. ..++.|.+|+++. +... .+..+ ......+.|+|+|++|+++.. ++. |.+|++....
T Consensus 188 ~lyv~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~-I~v~~i~~~~~~~ 264 (330)
T PRK11028 188 YAYCVN--ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASL-ISVFSVSEDGSVL 264 (330)
T ss_pred EEEEEe--cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCe-EEEEEEeCCCCeE
Confidence 887764 3479999999973 2322 22211 122346889999999999865 566 9999986433
Q ss_pred -eEEEEEeCCCcCceEEEEECCCCCEEEEEeC-CCeEEEEEecC
Q 014007 293 -LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV 334 (432)
Q Consensus 293 -~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 334 (432)
.+..+..+ .....+.|+|||++|+++.. +++|.+|+++.
T Consensus 265 ~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 265 SFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEeEEEecc---ccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 22222221 24568999999999998774 89999999864
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=7e-16 Score=130.47 Aligned_cols=236 Identities=17% Similarity=0.199 Sum_probs=166.6
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE-eecCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL 204 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~ 204 (432)
...+..+.|+.+...+..|+.+ ..++|.......... ......|-.+-|+.+-..++. ...+++++++.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~------Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKD------GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCC------ceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccC
Confidence 3455566688888888888886 567777654332111 113344555566655444443 246899998887
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeee---eccCCceeEEEEcCCCCEEEEE--cC
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFI---MAHDSRIACFALTQDGQLLATS--ST 278 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~---~~~~~~i~~~~~sp~~~~l~~~--~~ 278 (432)
..+..+. ....|-++.+.. ++++ ++ -...|+|||++..+ +.++ ..+...+.++.+++.+.+||.- ..
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr--~RLv-V~---Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR--KRLV-VC---LEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc--ceEE-EE---EcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC
Confidence 7777664 334454555544 4544 33 34569999999844 3333 3466667777777777888863 23
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe-EEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLS 357 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
.|. |.|||+.+.+.+..+.. |++.+.+++|+++|.+||++++.|+ ||||.+.+++.+.++
T Consensus 152 ~Gd-V~l~d~~nl~~v~~I~a--H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF---------------- 212 (391)
T KOG2110|consen 152 SGD-VVLFDTINLQPVNTINA--HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF---------------- 212 (391)
T ss_pred Cce-EEEEEcccceeeeEEEe--cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee----------------
Confidence 566 99999999999999984 7899999999999999999999987 789999998743221
Q ss_pred eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCC
Q 014007 358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVN 413 (432)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 413 (432)
-++.. --.|.+++|+||+++|++.+..++|+||+++...
T Consensus 213 -RRG~~----------------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 213 -RRGTY----------------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -eCCce----------------eeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 11111 1248899999999999999999999999997754
No 186
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=4.9e-16 Score=145.79 Aligned_cols=216 Identities=13% Similarity=0.057 Sum_probs=146.9
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
..|.+||...........+...+.+.+|+|||..++. +..|++||+.+++... +...........|+|+|+.+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEE
Confidence 4799999754444333347788999999999988773 2469999998876533 33334444578999999988
Q ss_pred EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCc-eEEEEECCCCceEEEEEeCCCcCceE
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+++.....+..|++||+.++....+..+.......+|+|||+.|+..+. ++. .|+++|+.+++...... +.....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~---~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF---QGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec---CCCCcc
Confidence 7665333345799999998887777777666678999999998887764 332 16777877776443222 123345
Q ss_pred EEEECCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 308 SLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
.++|+|||++|+..+.++ .|++||+.+++.. .+. +.....
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~------------------------------------~Lt-~~~~~~ 382 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR------------------------------------TLT-PGSLDE 382 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE------------------------------------ECC-CCCCCC
Confidence 789999999998765433 6999999776521 111 111234
Q ss_pred EEEEccCCCEEEEEecC-CeEEEEEecCC
Q 014007 385 IVAFGHQKNTVVILGMD-GSFYRCQFDPV 412 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~d-g~v~iw~~~~~ 412 (432)
...|+|||++|+..+.+ |.-.||.++..
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 57899999988877663 44445555553
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.4e-17 Score=141.62 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=157.1
Q ss_pred EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEE
Q 014007 133 VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQ 209 (432)
Q Consensus 133 ~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~ 209 (432)
..++|+.++..+++++.| |++|+|++.+...+.... |...|.++.|+|||+++++ ....+||+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~d-----g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-----GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeecccc-----ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhh
Confidence 678899999999999999 999999988777666555 9999999999999999984 33999999999976665
Q ss_pred Eeec--cCCcceEEEecCC--CcEEEEeecCCCCcEEEEEccC--C----ceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 210 IETI--ANPKGLCAVSQGV--GSLVLVCPGLQKGQVRVEHYAS--K----RTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 210 ~~~~--~~~~~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~--~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
.... ......|.|+.++ ..+++++.-..-+.|+.||+.. + +..........|.+++.+++|++++.|+.|
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 5422 2234457777665 3455554444567777777654 1 222333345679999999999999999999
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|. |-|++..+.++++.++. .|...|+.+.|+||.+++++.+.+....|..+.-..
T Consensus 303 Gs-Vai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 303 GS-VAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred Cc-EEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 99 99999999999887775 488899999999999999999999999999887633
No 188
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=3e-16 Score=133.68 Aligned_cols=214 Identities=15% Similarity=0.231 Sum_probs=161.9
Q ss_pred cCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCC
Q 014007 126 RGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL 204 (432)
Q Consensus 126 ~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~ 204 (432)
.+|...|.++.|+| +...+++|+.| .+|.||.+..+.....+ -
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD-----~~v~vW~IPe~~l~~~l-------------------------------t 121 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSED-----TKVMVWQIPENGLTRDL-------------------------------T 121 (472)
T ss_pred cCccccccccccCccCCceeecCCCC-----ceEEEEECCCcccccCc-------------------------------c
Confidence 58999999999998 56788999999 99999998654322211 1
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~ 284 (432)
+++..+.+|...+..++|+|-..++++.+ | .|..|.+|++.++.......|...|+++.|+-||.+|++.+.|.. ||
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~NVLlsa-g-~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKk-vR 198 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAPNVLLSA-G-SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKK-VR 198 (472)
T ss_pred cceEEEeecceeEEEEeecccchhhHhhc-c-CCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccce-eE
Confidence 55667788999999999999988876543 4 699999999999765544459999999999999999999999999 99
Q ss_pred EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee
Q 014007 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG 361 (432)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (432)
|||.++++.+.+-..| ....-..+-|-.+|..+.+|- .+..+.+||..+.+..-.
T Consensus 199 v~dpr~~~~v~e~~~h-eG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~--------------------- 256 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAH-EGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIA--------------------- 256 (472)
T ss_pred EEcCCCCcEeeecccc-cCCCcceeEEeccCceeeeccccccccceeccCcccccCcce---------------------
Confidence 9999999999887553 223456677778888555543 578899999887653210
Q ss_pred cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEecCC
Q 014007 362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFDPV 412 (432)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~ 412 (432)
+..+...+ .|.---|.+|.+.|..+| .||.|+.|.+..+
T Consensus 257 -----------~~elDtSn-Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 257 -----------LQELDTSN-GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -----------eEEeccCC-ceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 22233222 244445677888777555 4999999998664
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.7e-16 Score=147.72 Aligned_cols=259 Identities=14% Similarity=0.105 Sum_probs=183.3
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCce--eEE---e--ecCCce
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRC--IGE---L--SFRSEV 178 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~---~--~~~~~v 178 (432)
.+.||++... ......+. ....|.++.|++. ...+++|..+ |.|.+||+..+.. ... . .|..++
T Consensus 223 ~~~vW~~~~p-~~Pe~~~~--~~s~v~~~~f~p~~p~ll~gG~y~-----GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v 294 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVLE--SPSEVTCLKFCPFDPNLLAGGCYN-----GQVVLWDLRKGSDTPPSGLSALEVSHSEPV 294 (555)
T ss_pred eEEEEecCCC-CCceEEEe--cCCceeEEEeccCCcceEEeeccC-----ceEEEEEccCCCCCCCcccccccccCCcCe
Confidence 3889998655 23334453 6788999999885 5677778888 9999999987654 222 2 288999
Q ss_pred EEEEEecCcc---EEE--eCCeEEEEEcCCCeee-E-----EEe------eccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 179 RSVKLRRDRI---IVV--LEQKIFVYNFADLKLL-H-----QIE------TIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 179 ~~~~~~~~~~---~~~--~d~~i~i~d~~~~~~~-~-----~~~------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
..+.|..+-. ++. +||.|..|+++.-... . ... .....++.++|.+.....+++ |+++|.|
T Consensus 295 ~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV--GTe~G~v 372 (555)
T KOG1587|consen 295 TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV--GTEEGKV 372 (555)
T ss_pred EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE--EcCCcEE
Confidence 9999976432 332 4999999998753221 1 111 112345678888877766664 4688988
Q ss_pred EEEEccC---Cc------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEE
Q 014007 242 RVEHYAS---KR------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 242 ~i~d~~~---~~------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
..-+-.. .. ...+..|.+.|+++.++|=+..++..+.|.+ |+||... ...++..+.. +...+++++|
T Consensus 373 ~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~--~~~~v~~vaW 449 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDS--SPDYVTDVAW 449 (555)
T ss_pred EEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhh--ccceeeeeEE
Confidence 7733322 22 2345678999999999996655555555888 9999977 5666666664 4466999999
Q ss_pred CCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 312 SSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 312 s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
||... .|+++..||.|.+||+......+ +.+.+.+....+.+.|++
T Consensus 450 SptrpavF~~~d~~G~l~iWDLl~~~~~P---------------------------------v~s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 450 SPTRPAVFATVDGDGNLDIWDLLQDDEEP---------------------------------VLSQKVCSPALTRVRWSP 496 (555)
T ss_pred cCcCceEEEEEcCCCceehhhhhccccCC---------------------------------cccccccccccceeecCC
Confidence 99764 67788889999999998765332 222333344567788999
Q ss_pred CCCEEEEEecCCeEEEEEecC
Q 014007 391 QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.|+.|++|...|.+++|++..
T Consensus 497 ~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 497 NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCcEEEEecCCCcEEEEEcCc
Confidence 999999999999999999954
No 190
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2.5e-15 Score=141.24 Aligned_cols=214 Identities=10% Similarity=0.063 Sum_probs=148.5
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..|.++|..... .+.+. +...+...+|+|||+.++. +..|++||+.+++.. .+......+....|+|+|+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 589999975444 44444 7889999999999988773 358999999887653 34445556678899999998
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CC--ceEEEEECCCCceEEEEEeCCCcCc
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KG--TLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg--~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
+++.........|.+||+.++....+..+........|+|||+.|+..+. ++ . |+++|+..++... +.. +...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~-Iy~~d~~g~~~~~-lt~--~~~~ 335 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQ-LYVMNADGSNPRR-ISF--GGGR 335 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCe-EEEEECCCCCeEE-eec--CCCc
Confidence 87654332334588889988888777777777788999999998887664 22 5 8888987665543 332 2345
Q ss_pred eEEEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007 306 IYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS 382 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (432)
+....|+|||++|+....+ ..|.+||+..+... .+. ....
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~------------------------------------~lt-~~~~ 378 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER------------------------------------ILT-SGFL 378 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE------------------------------------ecc-CCCC
Confidence 6778999999999877643 36788887544310 011 1123
Q ss_pred ceEEEEccCCCEEEEEecC-Ce---EEEEEecCC
Q 014007 383 PYIVAFGHQKNTVVILGMD-GS---FYRCQFDPV 412 (432)
Q Consensus 383 v~~~~~s~~~~~l~~~~~d-g~---v~iw~~~~~ 412 (432)
+..+.|+|||+.|+..+.+ +. ..+|.++..
T Consensus 379 ~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 379 VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred CCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 5678999999998876653 22 344445544
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.75 E-value=1.5e-17 Score=144.28 Aligned_cols=228 Identities=16% Similarity=0.168 Sum_probs=187.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...-+.+.|+.+|+.|+.|+..| |..+|..+.+..+. +. -...|.++.|-.+..+++.+.. ..++|||
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~--v~Etv~Dv~~LHneq~~AVAQK------~y~yvYD- 197 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--IN--VMETVRDVTFLHNEQFFAVAQK------KYVYVYD- 197 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeee--ee--hhhhhhhhhhhcchHHHHhhhh------ceEEEec-
Confidence 45667899999999999999777 99999888776643 32 4567888888888888888876 6999999
Q ss_pred CCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007 164 HQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (432)
..|..+..++-...|..+.|-|...++++ .|.++--|+.+|+.+..+....+.+..++-+|-. .++..|..+|+
T Consensus 198 ~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N---aVih~GhsnGt 274 (545)
T KOG1272|consen 198 NNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN---AVIHLGHSNGT 274 (545)
T ss_pred CCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc---ceEEEcCCCce
Confidence 78888888887888999999999888874 6889999999999999988877877777777765 34445778999
Q ss_pred EEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEE
Q 014007 241 VRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319 (432)
Q Consensus 241 i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 319 (432)
|.+|.... ..+..+..|.++|.+|++.++|+|++|.+.|.. |+|||++....+.++.. +.+...++||..| +|
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg-lL- 348 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG-LL- 348 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc-ce-
Confidence 99999887 445667889999999999999999999999999 99999999988877774 3467888998755 34
Q ss_pred EEeCCCeEEEEEe
Q 014007 320 VSSDKGTVHVFNL 332 (432)
Q Consensus 320 ~~~~dg~i~iwd~ 332 (432)
+.+....|.||.=
T Consensus 349 A~~~G~~v~iw~d 361 (545)
T KOG1272|consen 349 ALSYGDHVQIWKD 361 (545)
T ss_pred eeecCCeeeeehh
Confidence 4444557999953
No 192
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=6.3e-15 Score=138.77 Aligned_cols=239 Identities=21% Similarity=0.332 Sum_probs=190.3
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-eeEEeec-C-CceEEEEE-ecCcc-EEEe----CCeEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELSF-R-SEVRSVKL-RRDRI-IVVL----EQKIF 197 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~~~~~~~-~-~~v~~~~~-~~~~~-~~~~----d~~i~ 197 (432)
.+...+..+.+.+.+..++.++.+ +.+.+|+...+. .+..+.. . ..+..+.+ .+++. ++.. |+.+.
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSD-----GTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCC-----CcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 578889999999999988888877 999999988886 5666652 3 36777777 77776 4442 78999
Q ss_pred EEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCC-EEE
Q 014007 198 VYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ-LLA 274 (432)
Q Consensus 198 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~-~l~ 274 (432)
+|+... ......+..|...+..+.+++++..+ +..+..++.+++|+... .....+..|...|.+++|+|++. +++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL--ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEE--EecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999987 78888888999999999999999833 32222499999999997 55666778999999999999998 555
Q ss_pred EEcCCCceEEEEECCCCceEE-EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
+++.|+. |++||...+..+. .+.. |.... -..|++++.++++++.|+.+++|++.....
T Consensus 216 ~~~~d~~-i~~wd~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---------------- 275 (466)
T COG2319 216 SGSSDGT-IRLWDLSTGKLLRSTLSG--HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS---------------- 275 (466)
T ss_pred EecCCCc-EEEEECCCCcEEeeecCC--CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc----------------
Confidence 5599999 9999998888877 4654 33443 238999998999999999999999998762
Q ss_pred CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
.+..+..|...|.++.|+|++..+++++.|+.+.+|+..
T Consensus 276 ------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 276 ------------------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314 (466)
T ss_pred ------------------EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence 012225677889999999999999989999999999553
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3e-15 Score=140.06 Aligned_cols=283 Identities=13% Similarity=0.137 Sum_probs=199.5
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe---EEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI---LALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
.-.|++|++++.....+.|.||...++.+. ..+. +|...+..+.+.+.. .++.++..+ |.|++||...+
T Consensus 21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i--~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~-----G~I~vwd~~~~ 92 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVYSTATGECI--TSLE-DHTAPLTSVIVLPSSENANYLIVCSLD-----GTIRVWDWSDG 92 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEEecchHhhh--hhcc-cccCccceeeecCCCccceEEEEEecC-----ccEEEecCCCc
Confidence 357899999999999999999999988877 4665 788888888776543 466677777 99999999988
Q ss_pred ceeEEeecCCceEEEEE-----------------------------------------------------------ecCc
Q 014007 167 RCIGELSFRSEVRSVKL-----------------------------------------------------------RRDR 187 (432)
Q Consensus 167 ~~~~~~~~~~~v~~~~~-----------------------------------------------------------~~~~ 187 (432)
..++++....++..+.+ ++.|
T Consensus 93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g 172 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG 172 (792)
T ss_pred EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence 87776653333333322 1111
Q ss_pred cEEE--eCCeEEEEEcCCCeeeE---EE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-----Cceeeeec
Q 014007 188 IIVV--LEQKIFVYNFADLKLLH---QI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMA 256 (432)
Q Consensus 188 ~~~~--~d~~i~i~d~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~ 256 (432)
.+.. .+..+.+|......... .. ..|...+++.+++|+++. ++ +|..||.|.+|.--. .....+.-
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~--~A-a~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERY--LA-AGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccce--EE-EeccCCcEEEEeccccccccccceEEEe
Confidence 1111 24456666665533100 00 123344678999999874 34 356899999996433 34567888
Q ss_pred cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|...|.+++|+++|.+|++|+..+. +.+|.+.+++ .+-+.. -.++|..+.+|||+.+.+....|+.|.+....+.+
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~V-Lv~Wq~~T~~-kqfLPR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGV-LVLWQLETGK-KQFLPR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred cccccceeEEecCCceEeecccceE-EEEEeecCCC-cccccc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 9999999999999999999999999 9999999998 333333 44899999999999999999999999999887766
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
....+.+.... .+.+ -+...+-.+.++++|.-+.++-.+..|.|.+|++-.
T Consensus 326 ~k~tIsgi~~~---------------~~~~---------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 326 IKSTISGIKPP---------------TPST---------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred hhhhccCccCC---------------Cccc---------cccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 33322111000 0000 112234466788888778888899999999988744
No 194
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=7.1e-16 Score=137.46 Aligned_cols=290 Identities=15% Similarity=0.189 Sum_probs=198.2
Q ss_pred CCCCCCeEEEEEcCCCCEEE-EEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEe-eeCCeEEEecCCCCCCCCCCeE
Q 014007 82 SSPPPTLLHISFNQDHGCFA-AGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~-~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~~~~~~~v 158 (432)
-.++..-+.|..+|||+|+. +|.-. .|++||+......+.+.+. ..++.+. .+.|...++--..| .+|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlD----ae~V~feiLsDD~SK~v~L~~D-----R~I 118 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLD----AEVVDFEILSDDYSKSVFLQND-----RTI 118 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccc----ccceeEEEeccchhhheEeecC-----cee
Confidence 34667778899999999864 55533 4999999987777665543 3344333 23333222222233 555
Q ss_pred EEEeCCCCceeEEeecCCceEEEEEec-C-ccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 159 MIWDDHQSRCIGELSFRSEVRSVKLRR-D-RIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
.+.. .-| .-..+.-+..-.+++++. . ..+++ +...|+-++++.|+-+..+......++++.+++... ++++ |
T Consensus 119 efHa-k~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg--Lla~-G 193 (703)
T KOG2321|consen 119 EFHA-KYG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG--LLAC-G 193 (703)
T ss_pred eehh-hcC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccc--eEEe-c
Confidence 5443 111 112222334445566553 2 23333 577899999999999999988888999999988764 4554 6
Q ss_pred CCCCcEEEEEccCCce-eee------eccCC-----ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007 236 LQKGQVRVEHYASKRT-KFI------MAHDS-----RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~-~~~------~~~~~-----~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~ 303 (432)
+.+|.|..||.+.+.. ..+ ..|.+ .|+++.|+.+|-.+++|..+|. |.|||+++.+++..-. |...
T Consensus 194 t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~-v~iyDLRa~~pl~~kd-h~~e 271 (703)
T KOG2321|consen 194 TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS-VLIYDLRASKPLLVKD-HGYE 271 (703)
T ss_pred ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc-EEEEEcccCCceeecc-cCCc
Confidence 6899999999988432 222 23333 4999999999999999999999 9999999999886544 4456
Q ss_pred CceEEEEECCC--CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 304 AEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 304 ~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
.+|..+.|.+. +..+++. +...++|||-.+++.... + .+..
T Consensus 272 ~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~as-----------------------------------i-Ept~ 314 (703)
T KOG2321|consen 272 LPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMAS-----------------------------------I-EPTS 314 (703)
T ss_pred cceeeecccccCCCceEEec-chHHhhhcccccCCceee-----------------------------------c-cccC
Confidence 78999999775 3455554 567899999999984321 1 2333
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeeecccCCC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNFLKP 428 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 428 (432)
.++.+++-|++.+++++..++.+..|-+. ..|. -.+|++||+.
T Consensus 315 ~lND~C~~p~sGm~f~Ane~~~m~~yyiP-~LGP---aPrWCSfLdn 357 (703)
T KOG2321|consen 315 DLNDFCFVPGSGMFFTANESSKMHTYYIP-SLGP---APRWCSFLDN 357 (703)
T ss_pred CcCceeeecCCceEEEecCCCcceeEEcc-ccCC---CchhhhHHHh
Confidence 48899999999999999999988887663 2222 3456666653
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=4e-17 Score=145.05 Aligned_cols=247 Identities=13% Similarity=0.157 Sum_probs=178.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC------CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (432)
.+..|.+.|+.+.|.|....|++++.++ +++|++.. .......+|. +|..+|.+++...++..+.+|+.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~D-- 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGID-- 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccC--
Confidence 5677899999999999999999999555 99999921 2223345676 899999999999999999999999
Q ss_pred CCCCeEEEEeCCCC----------ceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007 153 YPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKG 218 (432)
Q Consensus 153 ~~~~~v~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~ 218 (432)
|+|+.|++... .....+. |.+.|+.++++.....++ +||++++|+...... ..+........
T Consensus 366 ---g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 366 ---GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred ---ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 99999965421 1223344 899999999998665555 499999999876554 33322222111
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccC---C-ceeeee-------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---K-RTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~-~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
-..++.......... .+.....+++.. . .+..+. .....+..+.++|.+.+.+++..|+. |+++|
T Consensus 442 Plsvd~~ss~~a~~~---~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~d 517 (577)
T KOG0642|consen 442 PLSVDRTSSRPAHSL---ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFD 517 (577)
T ss_pred cceEeeccchhHhhh---hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccc
Confidence 222222222212221 123333333333 1 111111 12245778899999999999999999 99999
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
..+++.+..... |...++++++.|+|.+|++++.|+.+++|.+....+..
T Consensus 518 n~~~~~l~s~~a--~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 518 NKTGKILHSMVA--HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ccccccchheee--ccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 999999988875 66899999999999999999999999999998776544
No 196
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=6.9e-16 Score=131.46 Aligned_cols=231 Identities=11% Similarity=0.098 Sum_probs=166.7
Q ss_pred CcccCCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCee-----EEEeecccCcceeEEEEeeeCC-eEEEecCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCN-ILALVGGG 148 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~ 148 (432)
+.....+|.+.|..++|+|-.. .+|+|+++. |.||.+..... .....+. +|...|--+.|+|. ...|++++
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeecccchhhHhhcc
Confidence 3456789999999999999654 678888655 99999854322 1234565 89999999999985 45777888
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcc-eEEEec
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKG-LCAVSQ 224 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~ 224 (432)
.| .+|.+||+.+|+.+.++.|...|.++.|+.||.++++ |..|+|||.++++.+..-..|.+.-. ...|-.
T Consensus 152 ~D-----n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 152 SD-----NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA 226 (472)
T ss_pred CC-----ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence 88 9999999999999999999999999999999999995 89999999999999888766665332 345556
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCC--ce-eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCce-EEEEEe
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASK--RT-KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL-LQEVRR 299 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~--~~-~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~-~~~~~~ 299 (432)
++..+....+...+..+-+||...- .+ ..-......|.---|.+|.+.+..++ .|+. ||.|.+..-.. ++-+..
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~ 305 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNT 305 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEecc
Confidence 6652211222246889999998762 11 11123455666667888888776554 6888 99999876553 222222
Q ss_pred CCCcCceEEEEECCC
Q 014007 300 GADRAEIYSLAFSSN 314 (432)
Q Consensus 300 ~~~~~~i~~~~~s~~ 314 (432)
-....+-..+.|-|.
T Consensus 306 f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 306 FSSKEPQRGMGFMPK 320 (472)
T ss_pred cccCCcccccccccc
Confidence 113345567777764
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=2.6e-16 Score=139.12 Aligned_cols=238 Identities=14% Similarity=0.186 Sum_probs=147.1
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE----EEeecccCcceeEEEEe---eeCCeEEEecCCCCCCCCCCeEE
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI----FRRDFERGGGIGVVEML---FRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~---~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
.+....++-.|.+|+..-.+.+.+|+....... ..+.+. +......++. -.+.+.-+..+-.- |.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~t-----Gqvq 198 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTT-----GQVQ 198 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhccc-CCCCceecccccccCCCCcceEEeecc-----CceE
Confidence 344555556677777776666888877532211 112222 2222222221 12333333333333 7888
Q ss_pred EEeCCCCceeEEee-----cCCceEEEEEecC--ccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 160 IWDDHQSRCIGELS-----FRSEVRSVKLRRD--RIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 160 iwd~~~~~~~~~~~-----~~~~v~~~~~~~~--~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
+.|....+..+.+. .+..|+++.|-|. +.+++ .+|.+++||..-. .. .........+++..+.
T Consensus 199 ~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~------~~--~t~p~~~~~k~~~~f~ 270 (636)
T KOG2394|consen 199 LIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV------CG--ATAPSYQALKDGDQFA 270 (636)
T ss_pred EecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc------cc--CCCCcccccCCCCeeE
Confidence 88866533222222 4578999999984 45555 4999999996210 00 0111222334444443
Q ss_pred EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
+..+- .......+..+.--.+.|..++|+|||++||+.+.||. +||||..+.+++..++. .-+...|++
T Consensus 271 i~t~k--------sk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvc 339 (636)
T KOG2394|consen 271 ILTSK--------SKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVC 339 (636)
T ss_pred Eeeee--------ccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEE
Confidence 32210 00011334444444568999999999999999999999 99999998887766653 337899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP 349 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (432)
|||||+||++|++|.-|.||.+...+.+..-.+|..+++
T Consensus 340 WSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs 378 (636)
T KOG2394|consen 340 WSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVS 378 (636)
T ss_pred EcCCccEEEecCCcceEEEEEeccceEEEecccccccee
Confidence 999999999999999999999999886555544444444
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=4.4e-16 Score=145.79 Aligned_cols=232 Identities=14% Similarity=0.072 Sum_probs=159.3
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecC
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 186 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 186 (432)
.|.+||.+.... +.+. .+...+....|+|++..++..+.+. ....|++||+.+++........+....++|+||
T Consensus 185 ~i~i~d~dg~~~---~~lt-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPD 258 (429)
T PRK01742 185 EVRVADYDGFNQ---FIVN-RSSQPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPD 258 (429)
T ss_pred EEEEECCCCCCc---eEec-cCCCccccceEcCCCCEEEEEEecC--CCcEEEEEeCCCCceEEEecCCCccCceeECCC
Confidence 388888765543 2333 4566789999999998877654320 015799999988764333223444557899999
Q ss_pred ccEEEe----CCe--EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccC
Q 014007 187 RIIVVL----EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHD 258 (432)
Q Consensus 187 ~~~~~~----d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~ 258 (432)
|..++. +|. |++||+.+++. ..+..+...+....|+|+|+.+++++ ..++...||+++. .....+ .+.
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~~~~~l-~~~ 334 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGGGASLV-GGR 334 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEe-cCC
Confidence 987762 554 55567665553 44555555677899999999876653 3567778887654 333333 343
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC--CC
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV--NS 336 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~ 336 (432)
. .+..|+|||++|+..+.++ +.+||+.+++....... .....+.|+|||++|+.++.++.+.+|++.. ++
T Consensus 335 ~--~~~~~SpDG~~ia~~~~~~--i~~~Dl~~g~~~~lt~~----~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 335 G--YSAQISADGKTLVMINGDN--VVKQDLTSGSTEVLSST----FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred C--CCccCCCCCCEEEEEcCCC--EEEEECCCCCeEEecCC----CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 3 4678999999998888765 67799998876533221 1235688999999999999999888888753 32
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 391 (432)
. ...+..|++.+..++|+|-
T Consensus 407 ~-----------------------------------~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 F-----------------------------------KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred c-----------------------------------eEEccCCCCCCCCcccCCC
Confidence 1 3346667788888999984
No 199
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.4e-15 Score=139.46 Aligned_cols=211 Identities=11% Similarity=0.070 Sum_probs=144.7
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC---CCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEe
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG---PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR 184 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 184 (432)
|.+||.+..... .+. .+...+....|+|++..++... .+ ..|++|++.+++........+.+..+.|+
T Consensus 181 l~~~d~dg~~~~---~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~-----~~i~i~dl~~G~~~~l~~~~~~~~~~~~S 251 (429)
T PRK03629 181 LRVSDYDGYNQF---VVH-RSPQPLMSPAWSPDGSKLAYVTFESGR-----SALVIQTLANGAVRQVASFPRHNGAPAFS 251 (429)
T ss_pred EEEEcCCCCCCE---Eee-cCCCceeeeEEcCCCCEEEEEEecCCC-----cEEEEEECCCCCeEEccCCCCCcCCeEEC
Confidence 777777655433 122 2556788999999998776432 22 57999999888654443345556678999
Q ss_pred cCccEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccCCceeeeec
Q 014007 185 RDRIIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMA 256 (432)
Q Consensus 185 ~~~~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~ 256 (432)
|||..++. ++ .|++||+.+++..+ +......+....|+|+|+.+++++ ..++ .|.++|+.++....+..
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g~~~~lt~ 328 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGGAPQRITW 328 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCCCeEEeec
Confidence 99987772 33 69999998876543 333344566889999999877654 2334 45555666666666655
Q ss_pred cCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe---EEEE
Q 014007 257 HDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT---VHVF 330 (432)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~---i~iw 330 (432)
+........|+|||++|+..+.+ .. |++||+.+++.. .+... .......|+|||++|+.++.++. +.++
T Consensus 329 ~~~~~~~~~~SpDG~~Ia~~~~~~g~~~-I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~ 403 (429)
T PRK03629 329 EGSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLV 403 (429)
T ss_pred CCCCccCEEECCCCCEEEEEEccCCCce-EEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 55566788999999998876543 34 889999888643 34321 22356889999999999887764 6667
Q ss_pred EecCC
Q 014007 331 NLKVN 335 (432)
Q Consensus 331 d~~~~ 335 (432)
++...
T Consensus 404 ~~~G~ 408 (429)
T PRK03629 404 STDGR 408 (429)
T ss_pred ECCCC
Confidence 76443
No 200
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.3e-15 Score=116.90 Aligned_cols=197 Identities=11% Similarity=0.148 Sum_probs=145.4
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---------c-eeEEee-cCCceEEEEEecCccEEEeCCeEEEE
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---------R-CIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVY 199 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---------~-~~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~i~ 199 (432)
.|..-+++|...+++.++.+ |.|.++.+.+. + .+...+ |.++|+.++|..+-.+.+.||.|+-|
T Consensus 12 tvf~qa~sp~~~~l~agn~~-----G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLF-----GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGW 86 (325)
T ss_pred HHHHHhhCCcceEEEEecCC-----CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEe
Confidence 34555678889999999998 99999987531 1 233334 99999999999665555579999999
Q ss_pred EcCCCee------eEEEee-------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccCCceeEEE
Q 014007 200 NFADLKL------LHQIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFA 265 (432)
Q Consensus 200 d~~~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~ 265 (432)
..+.... +.+... .-..|+.+.+.|..+.++++. .|+.++-||+.+++++ .+.+|...|.++.
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 8765321 111111 123467788898888877653 5899999999998765 5889999999999
Q ss_pred EcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc--------CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR--------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 266 ~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
-......+++|++||+ +|+||+++++++..+....++ ..|.+++- +..+|++|+ .-.+.+|+++..++
T Consensus 164 ~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 164 GRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 8555556889999999 999999999999888753332 24555554 556888776 45699999998875
Q ss_pred CC
Q 014007 338 SA 339 (432)
Q Consensus 338 ~~ 339 (432)
..
T Consensus 240 t~ 241 (325)
T KOG0649|consen 240 TC 241 (325)
T ss_pred eE
Confidence 43
No 201
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.6e-14 Score=128.72 Aligned_cols=291 Identities=11% Similarity=0.168 Sum_probs=194.3
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC-----CeEEEEe
Q 014007 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL-----NKVMIWD 162 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~-----~~v~iwd 162 (432)
.+..+++++|+++|.+.+..++|++......+.. .. .. .+.++.|+|.+.++.+-..-..+.+ -.+.+|+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt-~~---~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLC-VE---LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEE-ec---cc-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 6778999999999999998899999887763322 21 22 7889999999998876543211111 4578999
Q ss_pred CCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe----ec
Q 014007 163 DHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PG 235 (432)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g 235 (432)
++++.....+. -...-++..|+.|..+.+ ..+.+++|++...+.+. -..+...++.+.++|.+....+++ .+
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 99966665665 222227899999988877 58899999987633221 112344555566665543332222 11
Q ss_pred CCCCcEEEEEcc---------------------------------------------------------CCceeeeeccC
Q 014007 236 LQKGQVRVEHYA---------------------------------------------------------SKRTKFIMAHD 258 (432)
Q Consensus 236 ~~d~~i~i~d~~---------------------------------------------------------~~~~~~~~~~~ 258 (432)
+.-+.|+||.+. +.....-....
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 223344444333 11111111236
Q ss_pred CceeEEEEcCCCCEEEE--EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---CCeEEEEEec
Q 014007 259 SRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLK 333 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~--~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~ 333 (432)
++|+++.|+|+|+-+++ |-.-.. +.|||+ .+..+..+. +++-.++-|+|.|++|+.++- .|.|-|||+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnl-r~~~v~df~----egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAK-VTIFNL-RGKPVFDFP----EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccce-EEEEcC-CCCEeEeCC----CCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 79999999999987665 455667 999996 566776665 256789999999999998874 5789999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec------CCeEEEE
Q 014007 334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM------DGSFYRC 407 (432)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw 407 (432)
+.+++.. +.... -+-+.|+|||+++++++. |+.++||
T Consensus 345 n~K~i~~-----------------------------------~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 345 NRKLIAK-----------------------------------FKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred chhhccc-----------------------------------cccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 9775432 22222 456899999999998876 7889999
Q ss_pred EecCCC-----CC-cceEeeecccCC
Q 014007 408 QFDPVN-----GG-EMTQLEYNNFLK 427 (432)
Q Consensus 408 ~~~~~~-----~~-~~~~~~~~~~~~ 427 (432)
++.-.. -+ |+.++.|..+..
T Consensus 388 hytG~~l~~~~f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 388 HYTGSLLHEKMFKSELLQVEWRPFND 413 (566)
T ss_pred EecCceeehhhhhHhHhheeeeecCC
Confidence 985521 12 466666665443
No 202
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.71 E-value=5.6e-14 Score=127.43 Aligned_cols=276 Identities=14% Similarity=0.145 Sum_probs=170.4
Q ss_pred CEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 98 GCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 98 ~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
+++++.. ++.|.+.|.++.+.. ..+..+. .....+.+++++.++...+.| |.|.++|+.+++.+.++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~--~~i~~~~-~~h~~~~~s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV--ARIPTGG-APHAGLKFSPDGRYLYVANRD-----GTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE--EEEE-ST-TEEEEEE-TT-SSEEEEEETT-----SEEEEEETTSSSEEEEEE-S
T ss_pred cEEEEEecCCCEEEEEECCCCeEE--EEEcCCC-CceeEEEecCCCCEEEEEcCC-----CeEEEEECCcccEEEEEecC
Confidence 3454443 455999998887766 4554222 234557789988877777788 99999999999999999987
Q ss_pred CceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccC-------CcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007 176 SEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIAN-------PKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 244 (432)
....++++++||++++. .+.+.++|.++.+.++.+..... .+..+..++....+++.. .+.+.|.+.
T Consensus 78 ~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vV 155 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVV 155 (369)
T ss_dssp SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEE
Confidence 88899999999999883 78999999999999988865432 333455566666554443 345888888
Q ss_pred EccCCc-e-eeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCC--C-----------------
Q 014007 245 HYASKR-T-KFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA--D----------------- 302 (432)
Q Consensus 245 d~~~~~-~-~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~--~----------------- 302 (432)
|..... + ..............|+|++++++++ ..... |-++|.++++.+..+..+. |
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~-i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~ 234 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK-IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA 234 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE-EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE
T ss_pred EeccccccceeeecccccccccccCcccceeeecccccce-eEEEeeccceEEEEeeccccccccccccccCCCcceEEe
Confidence 876632 2 2233445667889999999987765 34445 8888887765544332110 0
Q ss_pred ---------------------------------cCceEEEEECCCCCEEEEE----eCCCeEEEEEecCCCCCCCCCCCC
Q 014007 303 ---------------------------------RAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNSGSARSEPRS 345 (432)
Q Consensus 303 ---------------------------------~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~ 345 (432)
.+.-.-+..+|+++++.+. ...++|.++|.++.+...
T Consensus 235 ~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~------ 308 (369)
T PF02239_consen 235 TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK------ 308 (369)
T ss_dssp EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE------
T ss_pred eccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE------
Confidence 0111345668888888877 355788888888865211
Q ss_pred CCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecC--CeEEEEEecCCCCCcceEee
Q 014007 346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMD--GSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~ 421 (432)
.+.. ....+..+.|++||+++..+..+ |.|.+|| ..+.+++.+++
T Consensus 309 -----------------------------~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D--~~Tl~~~~~i~ 356 (369)
T PF02239_consen 309 -----------------------------TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD--AKTLKEKKRIP 356 (369)
T ss_dssp ------------------------------HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE--TTTTEEEEEEE
T ss_pred -----------------------------EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE--CCCcEEEEEEE
Confidence 1111 11247789999999987766554 4688855 56667776665
No 203
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.8e-14 Score=134.76 Aligned_cols=211 Identities=13% Similarity=0.091 Sum_probs=140.0
Q ss_pred CeEEEEeCCCCceeEEe-ecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..|.++|.. +.....+ .+...+.+.+|+|||+.++. ...|++||+.+++... +...........|+|||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 578888864 4443444 47788999999999988772 2369999998876543 3333345567899999998
Q ss_pred EEEEeecCCCCcEEEE--EccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEE--ECCCCceEEEEEeCCCc
Q 014007 229 LVLVCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIF--NTLDGTLLQEVRRGADR 303 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~--d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vw--d~~~~~~~~~~~~~~~~ 303 (432)
+++.. +.++...|| |+.++....+..+........|+|||+.|+..+. ++. ..|| ++.+++... +.. ..
T Consensus 254 la~~~--~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~~~-lt~--~g 327 (427)
T PRK02889 254 LAVAL--SRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAAQR-VTF--TG 327 (427)
T ss_pred EEEEE--ccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCceEE-Eec--CC
Confidence 87654 355665555 5555666666666666778899999998886654 344 5555 444554332 221 11
Q ss_pred CceEEEEECCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (432)
.......|+|||++|+..+.++ .|++||+.+++.. .+.. .
T Consensus 328 ~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~------------------------------------~lt~-~ 370 (427)
T PRK02889 328 SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT------------------------------------ALTD-T 370 (427)
T ss_pred CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE------------------------------------EccC-C
Confidence 2345689999999998777554 6999999876521 1111 1
Q ss_pred CCceEEEEccCCCEEEEEecC-CeEEEEEecC
Q 014007 381 GSPYIVAFGHQKNTVVILGMD-GSFYRCQFDP 411 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~~~ 411 (432)
.......|+|||+.|+.++.+ |.-.+|-++.
T Consensus 371 ~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 371 TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 123568999999998877764 4444555555
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3e-16 Score=137.13 Aligned_cols=286 Identities=13% Similarity=0.102 Sum_probs=208.9
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~ 155 (432)
..+..|.+-|..|.|+..|..|++|+|.. |.+||....... ..+..+|...|..-.|-| +-.-+++++.|
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~--l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d----- 208 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK--LSFESGHCNNVFQAKFIPFSGDRTIVTSSRD----- 208 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc--cccccccccchhhhhccCCCCCcCceecccc-----
Confidence 56888999999999999999999999665 999999877666 455567888887777765 35678888888
Q ss_pred CeEEEEeCCC-Ccee---EEeecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEEEe---eccC---CcceEE
Q 014007 156 NKVMIWDDHQ-SRCI---GELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQIE---TIAN---PKGLCA 221 (432)
Q Consensus 156 ~~v~iwd~~~-~~~~---~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~---~~~~---~~~~~~ 221 (432)
|.|++=.+.. +.+. +..+|.++|..++.-|+..+.+ -|+.+.-+|++++.+-..+. .... ....++
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 9999887653 3332 2233999999999999866554 28889999998865433332 2222 233566
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCC-------ceeeee------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASK-------RTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------~~~~~~------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~ 288 (432)
..|...+. ++. |+.|..+++||.+.- .+..+. ...-.|++++|+.++.-|.++..|-. |++|.-
T Consensus 289 ~~P~nt~~-faV-gG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~ 365 (559)
T KOG1334|consen 289 VDPRNTNE-FAV-GGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNK 365 (559)
T ss_pred cCCCCccc-ccc-CChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecc
Confidence 66665543 343 558999999998761 122222 22346999999988877777788887 999953
Q ss_pred C--CC----------ceEEE-EEeCCCcCceEEEEE-CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007 289 L--DG----------TLLQE-VRRGADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (432)
Q Consensus 289 ~--~~----------~~~~~-~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
. .| ..+.. +++|.....|..+-| -|...|+++|++-|.|.||+-.+++.+.
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~--------------- 430 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR--------------- 430 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH---------------
Confidence 2 22 22333 777666667888865 6788999999999999999999987332
Q ss_pred CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
.+++....|+|+.=+|--..||+.|-|..|+||.-
T Consensus 431 --------------------~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP 465 (559)
T KOG1334|consen 431 --------------------FMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP 465 (559)
T ss_pred --------------------HhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence 23333447999999999999999999999999975
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.70 E-value=4.1e-14 Score=133.09 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=151.0
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
..|.++|...........+...+...+|+|||+.++. ...|++||+.+++... +.........++|+|+++.+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEE
Confidence 5788998754444333346667899999999998883 2479999998875533 33344455678999999988
Q ss_pred EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCce
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
++......+..|++||+.++....+..+........|+|+|+.|+..+..+ . |+++|+.+++.. .+.. +...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~-iy~~d~~~~~~~-~l~~--~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQ-IYMMDADGGEVR-RLTF--RGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCce-EEEEECCCCCEE-Eeec--CCCCc
Confidence 765433334568899998877777766666666789999999887765432 5 888898777654 3332 23456
Q ss_pred EEEEECCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007 307 YSLAFSSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 383 (432)
..+.|+|+|++|+.++.++ .|.+||+.++... .+..+ ...
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~------------------------------------~l~~~-~~~ 367 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER------------------------------------VLTDT-GLD 367 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE------------------------------------EccCC-CCC
Confidence 7889999999999888765 7888888775410 11111 123
Q ss_pred eEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007 384 YIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 420 (432)
...+|+|||++|+.++.++....+.+....|+....+
T Consensus 368 ~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 4568999999998887765433333333445444333
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=5.2e-15 Score=138.86 Aligned_cols=214 Identities=11% Similarity=0.097 Sum_probs=144.2
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.+||.+..... .+. .+...+....|+|++..++..+.... ...|++||+.+++........+...+.+|+|||
T Consensus 186 l~i~D~~g~~~~---~lt-~~~~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 186 LQVADSDGYNPQ---TIL-RSAEPILSPAWSPDGKKLAYVSFERG--RSAIYVQDLATGQRELVASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEECCCCCCce---Eee-cCCCccccccCCCCCCEEEEEecCCC--CcEEEEEECCCCCEEEeccCCCCccCceECCCC
Confidence 788887644332 232 35567888999999987776542200 157999999888754433355556688999999
Q ss_pred cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccCCceeeeeccCC
Q 014007 188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAHDS 259 (432)
Q Consensus 188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~~~ 259 (432)
..++. ++ .|++||+.+++.. .+..+.......+|+|+|+.+++.+ ..+| .|.++|+.++....+..+..
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCCCCeEEeecCCC
Confidence 87652 33 6999999887643 3444444445789999999876654 2344 46666776766655544444
Q ss_pred ceeEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC---CeEEEEEec
Q 014007 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLK 333 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~ 333 (432)
....++|+|+|++|+..+.++ . |.+||+.+++.. .+.. ........|+|||++|+..+.+ +.|+++++.
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~-I~v~d~~~g~~~-~Lt~---~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYR-IAVMDLSTGSVR-TLTP---GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCcee-EEEEECCCCCeE-ECCC---CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 556789999999998765433 5 899999888754 3432 2234567999999988877643 357777775
Q ss_pred CC
Q 014007 334 VN 335 (432)
Q Consensus 334 ~~ 335 (432)
..
T Consensus 412 g~ 413 (433)
T PRK04922 412 GR 413 (433)
T ss_pred CC
Confidence 43
No 207
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.5e-16 Score=139.19 Aligned_cols=241 Identities=14% Similarity=0.073 Sum_probs=179.8
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--------CceeEEee-cCCceEEEEEecCccEEEe---CC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--------SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQ 194 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~ 194 (432)
.|...+..+.|.+-...+++++.| |.+.+|++.. -+++.++. |.++|.|+++..++..+++ ||
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed-----~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASED-----GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccc-----cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 577788889999999999999999 9999999932 14667777 9999999999999998884 99
Q ss_pred eEEEEEcCCC----------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--cCCcee
Q 014007 195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIA 262 (432)
Q Consensus 195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~i~ 262 (432)
+|+.|++... .....+.+|.+.+..++++.....++ .| +.||++++|+.......++.. ..+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-sc--s~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SC--SSDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-ee--cCCceEEeeccCCcCccccCCccccCCcc
Confidence 9999965421 23456778999999999999887754 33 479999999988765544432 233445
Q ss_pred EEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 263 CFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 263 ~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
++.+-... .++++...-+. -.++++.....+..+...... ..+..+.++|.+.+.+++-.|+.|+++|..+++
T Consensus 444 svd~~ss~~a~~~~s~~~~~-~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGY-TSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred eEeeccchhHhhhhhccccc-ccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 66654332 22223222332 334455555555555432211 357788999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+ .....|...++++++.|+|-+|++++.||.+++|+++.
T Consensus 523 ~l-----------------------------------~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 523 IL-----------------------------------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred cc-----------------------------------hheeeccceecceeecCCCceEEeecCCceeehhhccc
Confidence 53 23456777899999999999999999999999999866
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.69 E-value=6.2e-15 Score=122.50 Aligned_cols=221 Identities=14% Similarity=0.103 Sum_probs=160.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe-eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
-..+|+|.+|++|+..+|++..+. |.||.....+ .....++. .|...++.+.|.+....+++++.| ..-++|
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d-----rnayVw 82 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD-----RNAYVW 82 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCC-----CCcccc
Confidence 457899999999999999998665 9999987666 44456676 799999999999999999999999 999999
Q ss_pred eC-CCCc--eeEE-eecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee----EEEeeccCCcceEEEecCCCcEE
Q 014007 162 DD-HQSR--CIGE-LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL----HQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 162 d~-~~~~--~~~~-~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
.. ..++ +... ++++...+++.|+|....++. ...|.||-++...-- +.-+.+...|.++.|+|++ .+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn--VL 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN--VL 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc--ce
Confidence 98 4443 2233 348999999999999888884 346777776543221 1112344566778888875 34
Q ss_pred EEeecCCCCcEEEEEcc-----CCc--------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007 231 LVCPGLQKGQVRVEHYA-----SKR--------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~-----~~~--------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
++ +|+.|+.+++|..- .+. +..+....+.+..+.|+|+|..|+-.+.|.. +.+-|....
T Consensus 161 la-aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~-v~~~da~~p 238 (361)
T KOG1523|consen 161 LA-AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDST-VSFVDAAGP 238 (361)
T ss_pred ec-ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCc-eEEeecCCC
Confidence 44 57799999998642 211 1122245678999999999999999999999 999986655
Q ss_pred c-eEEEEEeCCCcCceEEEEECCCCC
Q 014007 292 T-LLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 292 ~-~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
. .+...... .-+..++.|-.+..
T Consensus 239 ~~~v~~~~~~--~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 239 SERVQSVATA--QLPLLSVSWISENS 262 (361)
T ss_pred chhccchhhc--cCCceeeEeecCCc
Confidence 3 33333322 25677777755443
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3e-15 Score=127.54 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=179.6
Q ss_pred EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC------CceeEEee--cCCceEEEEEecCccEEE
Q 014007 120 FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ------SRCIGELS--FRSEVRSVKLRRDRIIVV 191 (432)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~------~~~~~~~~--~~~~v~~~~~~~~~~~~~ 191 (432)
+.+.+. +|...|.++.|+.++.+|++|+.| ..+++|++.. .+++.... |.+.|.+++|.-..++++
T Consensus 48 ~qKD~~-~H~GCiNAlqFS~N~~~L~SGGDD-----~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~ 121 (609)
T KOG4227|consen 48 CQKDVR-EHTGCINALQFSHNDRFLASGGDD-----MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLY 121 (609)
T ss_pred hhhhhh-hhccccceeeeccCCeEEeecCCc-----ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEe
Confidence 334454 799999999999999999999999 9999999753 35666666 678999999999988888
Q ss_pred e---CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCcee
Q 014007 192 L---EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIA 262 (432)
Q Consensus 192 ~---d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~ 262 (432)
+ +++|...|+++.+.+..+.. ..+.|..+..+|-.+.++++ +.++.|.+||.+... +...........
T Consensus 122 SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~---t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV---TRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred cCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE---ecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 6 78999999999887776632 23478888999986655443 378999999998743 223334556778
Q ss_pred EEEEcCC-CCEEEEEcCCCceEEEEECCCCce-EEEE---EeCC-CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 263 CFALTQD-GQLLATSSTKGTLVRIFNTLDGTL-LQEV---RRGA-DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 263 ~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~-~~~~---~~~~-~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.+-|+|. ..+|++.+..+. +-+||.+..+. +... .+.. ....-.++.|+|+|..|.+--....-.+||+-..+
T Consensus 199 t~~F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R 277 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR 277 (609)
T ss_pred eeeecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc
Confidence 8999994 567888888888 99999876432 1111 1100 11234678999999998887666666788887765
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeeccc-ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLP-KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.- +.+ ..-+ .|+ ....+.+++|..| ..+++|+.+=.|++|.+..
T Consensus 278 ~~V----------------~k~--D~N~~GY~-----------N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 278 CFV----------------LKS--DHNPNGYC-----------NIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cee----------------Eec--cCCCCcce-----------eeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 310 000 0000 000 0113567888766 4499999999999999965
No 210
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=9.9e-16 Score=128.24 Aligned_cols=185 Identities=14% Similarity=0.187 Sum_probs=141.9
Q ss_pred eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecC-CCcEEEEeecCCCCcEEEEEccCCc---eeeeeccC-CceeEEEE
Q 014007 192 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHD-SRIACFAL 266 (432)
Q Consensus 192 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~-~~i~~~~~ 266 (432)
+.|.|++||..+++.+..++++...++.+.|..+ +.+.++. ++.||.|++||++... ...+..+. .+..|++.
T Consensus 48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s--~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVIS--CSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL 125 (376)
T ss_pred cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEE--eccCCeEEEEEeecchhhhheeccCCCCCcceEeec
Confidence 5999999999999999999999998888998775 4444443 3589999999999832 23344454 46678877
Q ss_pred cCCCCEEEEEcC----CCceEEEEECCCCce-EEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007 267 TQDGQLLATSST----KGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSAR 340 (432)
Q Consensus 267 sp~~~~l~~~~~----dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~ 340 (432)
.-.++.+++|.. +.. |.+||++..+. +..+.. .|...|+++.|+|. -.+|++|+.||-|.|||++.......
T Consensus 126 nck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDa 203 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDA 203 (376)
T ss_pred cCcCCeEEeccccccCceE-EEEEEeccccchhhhhhh-hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhh
Confidence 767888888764 445 99999998876 666654 37789999999995 56899999999999999987642110
Q ss_pred CCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecCC
Q 014007 341 SEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~ 412 (432)
+...-.|...|..+.|..++ +.|.+-+..+.+.+|+++..
T Consensus 204 --------------------------------L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 204 --------------------------------LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred --------------------------------HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 11223355568899998876 46899999999999999654
No 211
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.69 E-value=8.3e-16 Score=135.94 Aligned_cols=206 Identities=13% Similarity=0.130 Sum_probs=162.0
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCc
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE 177 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~ 177 (432)
++++.+|+.+.|.+-.. + ..+... .|...+.+-.|+++|..+++.+.| |.|++|. ++|....++. ...+
T Consensus 78 ~~i~s~DGkf~il~k~~-r--VE~sv~-AH~~A~~~gRW~~dGtgLlt~GED-----G~iKiWS-rsGMLRStl~Q~~~~ 147 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSA-R--VERSIS-AHAAAISSGRWSPDGAGLLTAGED-----GVIKIWS-RSGMLRSTVVQNEES 147 (737)
T ss_pred EEEEcCCceEEEecccc-h--hhhhhh-hhhhhhhhcccCCCCceeeeecCC-----ceEEEEe-ccchHHHHHhhcCce
Confidence 44455566677776332 1 123443 799999999999999999999999 9999999 6776665655 7889
Q ss_pred eEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee
Q 014007 178 VRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM 255 (432)
Q Consensus 178 v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~ 255 (432)
|+|++|.|+..-++ ..+.+.|=-+.....+-.++.|.+-+-++.|++..+ ++++ |++|-..++||-.+..+..-.
T Consensus 148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~--lI~s-gGED~kfKvWD~~G~~Lf~S~ 224 (737)
T KOG1524|consen 148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN--IIAS-GGEDFRFKIWDAQGANLFTSA 224 (737)
T ss_pred eEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCcccc--ceee-cCCceeEEeecccCcccccCC
Confidence 99999999876555 377888888877777778899999998899988876 4454 569999999999998888888
Q ss_pred ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
.|+.+|++++|.|+ +.++.++.+- +| +.. ...+.|..++||+||..+++|+..|.+.+=.+-
T Consensus 225 ~~ey~ITSva~npd-~~~~v~S~nt--~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~i 286 (737)
T KOG1524|consen 225 AEEYAITSVAFNPE-KDYLLWSYNT--AR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAI 286 (737)
T ss_pred hhccceeeeeeccc-cceeeeeeee--ee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEeeee
Confidence 99999999999999 6666666553 45 222 144789999999999999999999987655443
No 212
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8e-14 Score=111.61 Aligned_cols=226 Identities=12% Similarity=0.167 Sum_probs=160.0
Q ss_pred CeEEEEEcCCCCEEEEEcC-CcEEEEEcCC---------CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTD-HGFRIYNCDP---------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.|.+-+++|.+++|++|.. +.|.++.+.. ++... ... .+|...+..+.|..+ ++++++. |
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~i-v~e-qahdgpiy~~~f~d~--~Lls~gd------G 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKI-VPE-QAHDGPIYYLAFHDD--FLLSGGD------G 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcce-eec-cccCCCeeeeeeehh--heeeccC------c
Confidence 4666789999999999984 4498888742 12221 222 379999999999843 3444443 8
Q ss_pred eEEEEeCCCCce------eEEee---c-----CCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007 157 KVMIWDDHQSRC------IGELS---F-----RSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGL 219 (432)
Q Consensus 157 ~v~iwd~~~~~~------~~~~~---~-----~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (432)
.|+-|....... +.+.. + -..|+++...|...-++ .|+.++.||+++|+..+++++|.+-+.+
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~ 161 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHS 161 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeee
Confidence 999998754321 11111 1 23578888887543333 3889999999999999999999999988
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeee---------cc-CCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIM---------AH-DSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~---------~~-~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~ 288 (432)
+........++ +|++||++++||.++.+ +..+. .| ..+|.+++- +...|++|+.-. +.+|.+
T Consensus 162 vv~R~~~~qil---sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~--lslwhL 234 (325)
T KOG0649|consen 162 VVGRNANGQIL---SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK--LSLWHL 234 (325)
T ss_pred eeecccCccee---ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc--eeEEec
Confidence 87744333332 57799999999999844 33332 12 235666665 555787777654 899999
Q ss_pred CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+..++...|. -+..+..+.|.. ..+++++..+.|.-|.+..
T Consensus 235 rsse~t~vfp---ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 235 RSSESTCVFP---IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cCCCceEEEe---cccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 9999999998 457889999954 5677888888898887754
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.68 E-value=1.7e-16 Score=132.16 Aligned_cols=218 Identities=14% Similarity=0.154 Sum_probs=168.9
Q ss_pred EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE----eCCeEEEEEcCCCeeeEE
Q 014007 134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFADLKLLHQ 209 (432)
Q Consensus 134 ~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~ 209 (432)
-+.|+|+++++++..+ -.+.|-|..+-+..+.+..-..|.-+.|..|..++. -++.|.+|++...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeee------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence 3568999999999986 578888888777666666667788899998877665 288999999998888888
Q ss_pred EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--eEEEEE
Q 014007 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFN 287 (432)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--~i~vwd 287 (432)
++....++..++|+|+|++++..+ .-+-.|.+|.+.+.....+.-....+..++|+|||++.+.++.... .+.|..
T Consensus 87 Ideg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred eccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 888888899999999999887654 5789999999999888777766677899999999999988876542 033333
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC--CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (432)
.....+++.+.. ..-..+.+.|+|||..||+-.. +-.|+.|....
T Consensus 165 c~~W~ll~~f~~--dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~l------------------------------- 211 (447)
T KOG4497|consen 165 CKAWILLKEFKL--DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGL------------------------------- 211 (447)
T ss_pred hHHHHHHHhcCC--CcccccCceECCCCcEEEEecchhhheeeeeeecc-------------------------------
Confidence 345566666764 3356789999999999886542 33333333322
Q ss_pred eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
.+..++|+|.+++|++|+.|+.++|.+
T Consensus 212 ----------------G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 212 ----------------GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ----------------ceeEEEeccccceEEeeccchhhhhhc
Confidence 266799999999999999999998843
No 214
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.68 E-value=6.3e-15 Score=121.48 Aligned_cols=162 Identities=12% Similarity=0.180 Sum_probs=113.4
Q ss_pred eEEEecCCCcEEEEeecC-------CCCcEEEEEcc--CCceeeeec-cCCceeEEEEcCCCCEEEEE--cCCCceEEEE
Q 014007 219 LCAVSQGVGSLVLVCPGL-------QKGQVRVEHYA--SKRTKFIMA-HDSRIACFALTQDGQLLATS--STKGTLVRIF 286 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~-------~d~~i~i~d~~--~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~--~~dg~~i~vw 286 (432)
.+.|+++|+.+++.+... .-+...+|.++ ......+.- ..++|.+++|+|+|+.|++. ..++. |.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEE
Confidence 466777777766654311 11344555553 344444433 34579999999999987654 45677 9999
Q ss_pred ECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD---KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
|++ ++.+..+. ...+..+.|+|+|++|++++. .|.|.+||+++.+.+..
T Consensus 89 d~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~----------------------- 140 (194)
T PF08662_consen 89 DVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST----------------------- 140 (194)
T ss_pred cCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-----------------------
Confidence 986 66666664 256789999999999999874 46799999997663221
Q ss_pred cceeecceeeEEEEecCCCceEEEEccCCCEEEEEec------CCeEEEEEecCCCCCcceEeeecccC
Q 014007 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM------DGSFYRCQFDPVNGGEMTQLEYNNFL 426 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~~~ 426 (432)
. ....++.++|+|||++|++++. |+.++||++ .|+++...+..+|.
T Consensus 141 ------------~--~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~---~G~~l~~~~~~~l~ 192 (194)
T PF08662_consen 141 ------------F--EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF---QGRLLYKKPFDELY 192 (194)
T ss_pred ------------c--ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe---cCeEeEecchhhhh
Confidence 1 1224789999999999998875 788999998 35666666665554
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.7e-14 Score=134.27 Aligned_cols=217 Identities=11% Similarity=0.028 Sum_probs=149.5
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.++|.+..... .+. .+...+....|+|++..++..+... ....|++||+.+++......+.+.+...+|+|||
T Consensus 184 l~~~d~dg~~~~---~lt-~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 184 LAIMDQDGANVR---YLT-DGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEECCCCCCcE---EEe-cCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 777776544332 232 3666889999999998766543210 0168999999888764433467778889999999
Q ss_pred cEEE-e---C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007 188 IIVV-L---E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (432)
Q Consensus 188 ~~~~-~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i 261 (432)
..++ + + ..|++||+.+++. ..+..+........|+|||+.+++++.......|+++|+.++..+.+..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 8765 2 3 3588889887665 344444445567899999998877653222357888898887777766556667
Q ss_pred eEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC------CeEEEEEe
Q 014007 262 ACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------GTVHVFNL 332 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~iwd~ 332 (432)
....|+|+|++|+..+.+ .. |.+||+..+. ...+.. ...+..+.|+|||++|+..+.+ ..|+++|+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~-i~~~d~~~~~-~~~lt~---~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFS-IGVMKPDGSG-ERILTS---GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceE-EEEEECCCCc-eEeccC---CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 788999999999876643 24 8889975544 344442 2346788999999998776542 25777777
Q ss_pred cCCC
Q 014007 333 KVNS 336 (432)
Q Consensus 333 ~~~~ 336 (432)
..+.
T Consensus 412 ~g~~ 415 (435)
T PRK05137 412 TGRN 415 (435)
T ss_pred CCCc
Confidence 6544
No 216
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.67 E-value=2.8e-14 Score=128.93 Aligned_cols=177 Identities=11% Similarity=0.135 Sum_probs=135.9
Q ss_pred CeEEEEeCCCCc-----eeEEeecCCceEEEEEec-CccEEE---eCCeEEEEEcCCC-------eeeEEEeeccCCcce
Q 014007 156 NKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL-------KLLHQIETIANPKGL 219 (432)
Q Consensus 156 ~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~ 219 (432)
|.|-||++.... .+-.+.....|+.+.|.| |...++ -||.|++|.+..+ .+-..+..|...|..
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 899999987632 233444678899999998 444444 2899999998764 344567889999999
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce-EEEE
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL-LQEV 297 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~-~~~~ 297 (432)
+.|+|-...++.. .+.|-+|++||+.+.. ...+.+|.+.|..++|||+|+.+|+.+.||+ |++|+-++++. +++-
T Consensus 683 lRfHPLAadvLa~--asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 683 LRFHPLAADVLAV--ASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPVYEG 759 (1012)
T ss_pred EEecchhhhHhhh--hhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCccccC
Confidence 9999977665433 3589999999999854 4568899999999999999999999999999 99999887643 3332
Q ss_pred EeCCCcCceEEEEECCCCCEEEEEeCC----CeEEEEEecCCC
Q 014007 298 RRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS 336 (432)
Q Consensus 298 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 336 (432)
++. -...--.+.|..||+++++.+.| ..|.+||.++..
T Consensus 760 ~gp-vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 760 KGP-VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred CCC-ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 221 22345678898999999888755 468888887654
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1e-14 Score=121.30 Aligned_cols=213 Identities=14% Similarity=0.170 Sum_probs=157.6
Q ss_pred cCCceEEEEEecCccEEEe---CCeEEEEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 174 FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 174 ~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
...+|++.+|++|+..++. ...|.||..... +..+++..|...++.++|+|..+.+. . ++.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-t--cs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-T--CSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-E--ccCCCCccccccC
Confidence 5789999999999998884 568999987654 46788889999999999999998764 2 3589999999984
Q ss_pred C----CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEE
Q 014007 248 S----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 248 ~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~ 320 (432)
. ++...+..++...+++.|+|.++.+|+|+.-.. |.||-++...-- +.++. .+...|++++|+|++-+|++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~-isVcy~E~ENdWWVsKhikk-PirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL-ISVCYYEQENDWWVSKHIKK-PIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccE-EEEEEEecccceehhhhhCC-ccccceeeeeccCCcceecc
Confidence 4 345567788999999999999999999999998 999876543221 11221 25678999999999999999
Q ss_pred EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec
Q 014007 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (432)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 400 (432)
|+.|+..+||..--... .+.+..... ++.+. |+.. +..+....+.|..+.|+|+|+.|+-.+.
T Consensus 164 Gs~D~k~rVfSayIK~V-dekpap~pW-----gsk~P---------FG~l--m~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGV-DEKPAPTPW-----GSKMP---------FGQL--MSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred cccCcceeEEEEeeecc-ccCCCCCCC-----ccCCc---------HHHH--HHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 99999999998643221 111111000 00010 0000 1223344567999999999999999999
Q ss_pred CCeEEEEE
Q 014007 401 DGSFYRCQ 408 (432)
Q Consensus 401 dg~v~iw~ 408 (432)
|+.+.+=+
T Consensus 227 ds~v~~~d 234 (361)
T KOG1523|consen 227 DSTVSFVD 234 (361)
T ss_pred CCceEEee
Confidence 99999843
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=9.3e-15 Score=120.45 Aligned_cols=148 Identities=10% Similarity=0.196 Sum_probs=110.3
Q ss_pred EEEEEecCccEEEe--C-----------CeEEEEEcCC-CeeeEEEeec-cCCcceEEEecCCCcEEEEeecCCCCcEEE
Q 014007 179 RSVKLRRDRIIVVL--E-----------QKIFVYNFAD-LKLLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (432)
Q Consensus 179 ~~~~~~~~~~~~~~--d-----------~~i~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 243 (432)
..+.|+++|.+|+. + +...+|.++. +.....+... .++|..++|+|+++.++++. |..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence 35677777776662 1 2344444422 2344444432 34699999999999887664 567789999
Q ss_pred EEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007 244 EHYASKRTKFIMAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 244 ~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 320 (432)
||++...+..+. ...+..+.|+|+|++|++++. .|. |.+||+++.+.+..+. | ..++.++|+|||++|++
T Consensus 88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~~~i~~~~---~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKKKKISTFE---H-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCCEEeeccc---c-CcEEEEEEcCCCCEEEE
Confidence 999866665553 567789999999999999864 467 9999999888887776 3 35789999999999998
Q ss_pred EeC------CCeEEEEEecC
Q 014007 321 SSD------KGTVHVFNLKV 334 (432)
Q Consensus 321 ~~~------dg~i~iwd~~~ 334 (432)
+.. |+.++||+...
T Consensus 161 a~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEeccceeccccEEEEEecC
Confidence 863 78899999964
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.1e-14 Score=132.37 Aligned_cols=211 Identities=13% Similarity=0.108 Sum_probs=135.4
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.++|.+..... .+. .+...+....|+|++..++..+... ....|++||+.+++........+.+...+|+|||
T Consensus 178 L~~~D~dG~~~~---~l~-~~~~~v~~p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 251 (427)
T PRK02889 178 LQISDADGQNAQ---SAL-SSPEPIISPAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDG 251 (427)
T ss_pred EEEECCCCCCce---Eec-cCCCCcccceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 666665433222 222 3556788899999998776544220 0146999999988765443355667789999999
Q ss_pred cEEEe----CCe--EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEc--cCCceeeeeccCC
Q 014007 188 IIVVL----EQK--IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY--ASKRTKFIMAHDS 259 (432)
Q Consensus 188 ~~~~~----d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~--~~~~~~~~~~~~~ 259 (432)
..++. ++. |+++|+..+. ...+..+........|+|||+.+++++ ..++...+|.+ .++....+..+..
T Consensus 252 ~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 252 RTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred CEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCceEEEecCCC
Confidence 87762 554 5555655444 444444444455688999999887654 23455566654 4454444443334
Q ss_pred ceeEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC---eEEEEEe
Q 014007 260 RIACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNL 332 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~ 332 (432)
.....+|+|||++|+..+.++ . |.+||+.+++... +... .......|+|||++|+.++.++ .+++.++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~-I~v~d~~~g~~~~-lt~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFK-LYVQDLATGQVTA-LTDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEE-EEEEECCCCCeEE-ccCC---CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 455688999999998776553 5 9999998887543 3321 2346789999999988877543 2444455
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=5.9e-14 Score=118.64 Aligned_cols=286 Identities=17% Similarity=0.172 Sum_probs=182.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKV 158 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v 158 (432)
..-..-.+..++|++.-..+|++. |+.|++|+-.. +.. ..++......+.+++|.|.+. .++.+.. +-|
T Consensus 94 t~ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~p--t~Lks~sQrnvtclawRPlsaselavgCr------~gI 164 (445)
T KOG2139|consen 94 TLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCP--TKLKSVSQRNVTCLAWRPLSASELAVGCR------AGI 164 (445)
T ss_pred hhhhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCC--ceecchhhcceeEEEeccCCcceeeeeec------cee
Confidence 333455788899999666677776 77799999655 322 334434677899999988643 4444444 689
Q ss_pred EEEeCCCC----c--------eeEEee--cCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceE
Q 014007 159 MIWDDHQS----R--------CIGELS--FRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLC 220 (432)
Q Consensus 159 ~iwd~~~~----~--------~~~~~~--~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 220 (432)
.+|..... . ....++ ...+|+++.|++||..++. |..|.|||..++..+.......+.+..+
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slL 244 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLL 244 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeE
Confidence 99976421 1 122233 3468999999999998883 7899999999987765554455677789
Q ss_pred EEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC----Cc---
Q 014007 221 AVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD----GT--- 292 (432)
Q Consensus 221 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----~~--- 292 (432)
.|+||++.++.++ -|+..++|+... ........-.+.|....|+|+|++|+....... ++|.+.- ..
T Consensus 245 kwSPdgd~lfaAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~ 319 (445)
T KOG2139|consen 245 KWSPDGDVLFAAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLR 319 (445)
T ss_pred EEcCCCCEEEEec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccC
Confidence 9999999876543 789999996544 222233334558999999999998776554433 4444321 10
Q ss_pred --------eEEEEE-----eC--CCcCceEEEEECCCCCEEEEEeCCCe--------EEEEEecCCCCCCCCCCCCCCCC
Q 014007 293 --------LLQEVR-----RG--ADRAEIYSLAFSSNAQWLAVSSDKGT--------VHVFNLKVNSGSARSEPRSTSDP 349 (432)
Q Consensus 293 --------~~~~~~-----~~--~~~~~i~~~~~s~~~~~l~~~~~dg~--------i~iwd~~~~~~~~~~~~~~~~~~ 349 (432)
++..+. .+ .-.+++.+++|.|.|.+||+.-..+. |.+||.+..-..
T Consensus 320 ~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~v----------- 388 (445)
T KOG2139|consen 320 PQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPV----------- 388 (445)
T ss_pred cccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCce-----------
Confidence 111111 00 01257899999999999998764432 455555443210
Q ss_pred CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc---CCCEEEEEecCCeEEEEEecCC
Q 014007 350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH---QKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
.+.-. -+.+. ..-.-+.|+| ++.+|.++=..|.+.-|.+..+
T Consensus 389 -------els~c-------------g~i~g-e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 389 -------ELSYC-------------GMIGG-EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred -------EEEec-------------ccccC-CCCceEEeeecccCCcEEEEEeccCceEeeeeEEE
Confidence 00000 00001 1133456665 6677888888899988887553
No 221
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.66 E-value=1.6e-11 Score=111.63 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=173.0
Q ss_pred CcEEEEEc--CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee-cCCce
Q 014007 106 HGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEV 178 (432)
Q Consensus 106 ~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~-~~~~v 178 (432)
++|.+|++ ++++........ .......+++++++..|.+..... ...+.|..|++... +.+.+.. .....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 46999988 444444333332 333344566677666555544310 01289999988764 2333444 45666
Q ss_pred EEEEEecCccEEEe----CCeEEEEEcCC-CeeeEE---Ee--e--------ccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007 179 RSVKLRRDRIIVVL----EQKIFVYNFAD-LKLLHQ---IE--T--------IANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 179 ~~~~~~~~~~~~~~----d~~i~i~d~~~-~~~~~~---~~--~--------~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (432)
..++++|++.+++. +|.|.++++.. +..... +. + .......+.++|+++.+++..-| ...
T Consensus 90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~ 167 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADR 167 (345)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTE
T ss_pred EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCE
Confidence 78999999998873 88999999987 443332 21 0 11223478999999988766533 468
Q ss_pred EEEEEccCCc--eee---e-eccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECC--CCc--eEEEEEeC---C-CcCc
Q 014007 241 VRVEHYASKR--TKF---I-MAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGT--LLQEVRRG---A-DRAE 305 (432)
Q Consensus 241 i~i~d~~~~~--~~~---~-~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~--~~~--~~~~~~~~---~-~~~~ 305 (432)
|.+|+++... +.. + .........++|+|+++++++..+ ++. |.++++. +++ .+..+... . ....
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT-VSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc-EEEEeecccCCceeEEEEeeeccccccccCC
Confidence 9999997743 322 2 244566889999999998876655 555 9999988 443 23333321 0 1125
Q ss_pred eEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 306 IYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
...|.++|||++|+++. ..++|.+|++...... +. .+..+.......+
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~-----------------l~--------------~~~~~~~~G~~Pr 295 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGT-----------------LT--------------LVQTVPTGGKFPR 295 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTT-----------------EE--------------EEEEEEESSSSEE
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCc-----------------eE--------------EEEEEeCCCCCcc
Confidence 78999999999988765 6788999999543200 00 0222333334478
Q ss_pred EEEEccCCCEEEEEec-CCeEEEEEecCCCCCc
Q 014007 385 IVAFGHQKNTVVILGM-DGSFYRCQFDPVNGGE 416 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~ 416 (432)
.++++|+|++|++++. ++.|.+|++|.++|..
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 8999999999998885 6789999999887653
No 222
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=117.94 Aligned_cols=234 Identities=12% Similarity=0.069 Sum_probs=154.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-----e----EEEecCCCCCCC
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-----I----LALVGGGPDPQY 153 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~----~~~~s~~~d~~~ 153 (432)
.|...|+.+.--|++.++.-|-|..+.+|++........ |...+.++-|.+- . ..++.-++.
T Consensus 54 ~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rg--- 124 (323)
T KOG0322|consen 54 FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRG--- 124 (323)
T ss_pred hccceeeceeecCCcchhhcCCCceEEEEEccCcceEEE------eeeeccccccccceeccCCCcchhheecCCcc---
Confidence 678889999999987766666677799999976544432 3333444444321 1 111111110
Q ss_pred CCCeEEEEeCCCCceeEEee-----cCCceEEEEEec-CccEEE--e---CCeEEEEEcCCCee----------eEEEee
Q 014007 154 PLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRR-DRIIVV--L---EQKIFVYNFADLKL----------LHQIET 212 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~~~--~---d~~i~i~d~~~~~~----------~~~~~~ 212 (432)
...+.+-|......++... ..+.+.+..+.. ++.++. . +|.+.+||+.++.. ...+..
T Consensus 125 -sde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~as 203 (323)
T KOG0322|consen 125 -SDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNAS 203 (323)
T ss_pred -cchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhh
Confidence 0112222222112222221 245566666443 333333 2 89999999998733 333345
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
|..++..+.+.+.-+.-+ .|+.+..+..|.++-. .+ .........|..+.+.||++.+|+++.|+. ||||.
T Consensus 204 h~qpvlsldyas~~~rGi---sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~R-iRVys 279 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGI---SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHR-IRVYS 279 (323)
T ss_pred ccCcceeeeechhhcCCc---CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCc-EEEEE
Confidence 677888888876544332 3456778888887652 21 223334567899999999999999999999 99999
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 332 (432)
.++.+.+..++- |...|++++|+|+...+|+++.|++|.+|++
T Consensus 280 wrtl~pLAVLky--Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 280 WRTLNPLAVLKY--HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eccCCchhhhhh--hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999986 6699999999999999999999999999986
No 223
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.7e-13 Score=124.65 Aligned_cols=214 Identities=15% Similarity=0.069 Sum_probs=144.1
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
.|.++|...+.......+...+....|+|||..++. + ..|++||+.+++... +...........|+|+|+.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEE
Confidence 588888765554444457788999999999988763 2 369999998876533 323333445689999999887
Q ss_pred EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+......+..|+++|+.++....+..+........|+|||+.|+..+.. .. |+++|+.+++....... .....
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~-iy~~d~~~g~~~~lt~~---~~~~~ 334 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQ-IYKVNVNGGRAERVTFV---GNYNA 334 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCce-EEEEECCCCCEEEeecC---CCCcc
Confidence 6553323347888899988777777666667788999999988766542 24 78888888775433221 12345
Q ss_pred EEEECCCCCEEEEEeCC-C--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 308 SLAFSSNAQWLAVSSDK-G--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
...|+|||++|+..+.+ + .|.+||+.+++.. .+.. .....
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~------------------------------------~lt~-~~~~~ 377 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR------------------------------------ILTD-TSLDE 377 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE------------------------------------EccC-CCCCC
Confidence 67899999999877643 3 5788888876511 1111 11122
Q ss_pred EEEEccCCCEEEEEecC-CeEEEEEecCC
Q 014007 385 IVAFGHQKNTVVILGMD-GSFYRCQFDPV 412 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~d-g~v~iw~~~~~ 412 (432)
...|+|||+.|+..+.+ |.-.+|-++..
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECC
Confidence 46899999998876653 45455555553
No 224
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.3e-15 Score=132.53 Aligned_cols=197 Identities=15% Similarity=0.211 Sum_probs=167.5
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCee
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL 206 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~ 206 (432)
...-..+.|+.+|..++-++.. |.|..+|+.+++...++.....|.++.|-.+..+++. ...++||| ..|..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrK-----GHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD-~~GtE 202 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRK-----GHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYD-NNGTE 202 (545)
T ss_pred ccCCeeeeecCCccEEEecCCc-----cceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEec-CCCcE
Confidence 3445678899999999999988 9999999999999999999999999999999888884 78999999 67888
Q ss_pred eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
++.++.+. .+..+.|-|. ++++++ ++..|.+..-|+..+.+ ..+..-.+.+..+.-+|-...+-+|..+|+ |.+
T Consensus 203 lHClk~~~-~v~rLeFLPy--HfLL~~-~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt-VSl 277 (545)
T KOG1272|consen 203 LHCLKRHI-RVARLEFLPY--HFLLVA-ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT-VSL 277 (545)
T ss_pred EeehhhcC-chhhhcccch--hheeee-cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce-EEe
Confidence 88887543 4667778776 344554 55899999999998654 456667788889999999889999999999 999
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
|.-...+++..+.. |.++|.++++.++|+|+++.+.|..++|||+++...+
T Consensus 278 WSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 278 WSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred cCCCCcchHHHHHh--cCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 99888888777764 7799999999999999999999999999999987744
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.6e-13 Score=114.20 Aligned_cols=234 Identities=13% Similarity=0.177 Sum_probs=157.6
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-e---------CCeEEEE
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---------EQKIFVY 199 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---------d~~i~i~ 199 (432)
....++|+.|...++.+.+ .-.+||+.+--+...... +.+.+.-+..--..++++ . -+.|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~------~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD------TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEec------CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEE
Confidence 3455889988888888876 478999876533322222 222211111111222333 1 3579999
Q ss_pred EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cceeeeecc--CCceeEEEEcCCCCEEEE
Q 014007 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAH--DSRIACFALTQDGQLLAT 275 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~--~~~i~~~~~sp~~~~l~~ 275 (432)
|=...+++.++. ...+|..+.++.+ .++++ ..+.|.||.... +.+..+... ...+.+++-+.+..+||.
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r~--riVvv----l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRRD--RIVVV----LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcCC--eEEEE----ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 966677777775 4667888888776 44443 478999999885 334444332 333444433334556665
Q ss_pred -EcCCCceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe-EEEEEecCCCCCCCCCCCCCCCCCC
Q 014007 276 -SSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT-VHVFNLKVNSGSARSEPRSTSDPTL 351 (432)
Q Consensus 276 -~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (432)
|-.-|. |+|-|+...+. ...+. +|...|.+++.+.+|.++|+++..|+ |||||..+++.+.++
T Consensus 154 Pg~k~Gq-vQi~dL~~~~~~~p~~I~--AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~---------- 220 (346)
T KOG2111|consen 154 PGFKTGQ-VQIVDLASTKPNAPSIIN--AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL---------- 220 (346)
T ss_pred CCCccce-EEEEEhhhcCcCCceEEE--cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee----------
Confidence 445577 99999987665 34555 37899999999999999999999987 799999999854321
Q ss_pred CCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007 352 PTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
-++ ....|.+++|||++.+||+++..|+|.||.+.....
T Consensus 221 ------------------------RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 221 ------------------------RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ------------------------ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCC
Confidence 011 123599999999999999999999999999976543
No 226
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=3.5e-14 Score=132.41 Aligned_cols=245 Identities=16% Similarity=0.147 Sum_probs=172.8
Q ss_pred cCCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEEcCCCeeE---EEeecccCcceeEEEEeeeCCeEE--EecCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHG-CFAAGTDHG-FRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILA--LVGGGPDPQ 152 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~-~l~~~~~~~-i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~--~~s~~~d~~ 152 (432)
........|+|+.|+|... +|+.|..+| |.+||+...... ........|...++.+.|..+-.- +++++.|
T Consensus 237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD-- 314 (555)
T KOG1587|consen 237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD-- 314 (555)
T ss_pred EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC--
Confidence 3344567899999999655 566666555 999999755542 111222468889999998665433 7777778
Q ss_pred CCCCeEEEEeCCCCce-eE-----Ee-------ecCCceEEEEEecC--ccEEE-e-CCeEEEEEcCC---C-----eee
Q 014007 153 YPLNKVMIWDDHQSRC-IG-----EL-------SFRSEVRSVKLRRD--RIIVV-L-EQKIFVYNFAD---L-----KLL 207 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~-~~-----~~-------~~~~~v~~~~~~~~--~~~~~-~-d~~i~i~d~~~---~-----~~~ 207 (432)
|.|..|+++.-.. .. .. .....+++++|.+. ..+++ + +|.|..-+-.. . +..
T Consensus 315 ---G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~ 391 (555)
T KOG1587|consen 315 ---GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH 391 (555)
T ss_pred ---CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc
Confidence 9999998764322 11 11 12345788888774 33444 3 67776633222 1 123
Q ss_pred EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc-C-CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEE
Q 014007 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-S-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVR 284 (432)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~-~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~ 284 (432)
..+..|.+++..+.++|-+..+++.+ | |..++||... . ..+..+..+...+++++|||.. ..++++..||. |.
T Consensus 392 ~~~~~h~g~v~~v~~nPF~~k~fls~-g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~ 467 (555)
T KOG1587|consen 392 STFITHIGPVYAVSRNPFYPKNFLSV-G--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LD 467 (555)
T ss_pred ccccccCcceEeeecCCCccceeeee-c--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-ee
Confidence 34556788999999999988887665 3 8999999876 2 5566677778889999999954 57788888999 99
Q ss_pred EEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 285 IFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 285 vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
+||+.... ++..... +....+.+.|+++|+.|++|...|++++|++...
T Consensus 468 iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred hhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 99997543 3333332 3456788899999999999999999999999643
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-13 Score=133.91 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=193.5
Q ss_pred ccCCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEEcCCCe---eEEE--eecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDH-GCFAAGTDHG-FRIYNCDPFR---EIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~-i~iw~~~~~~---~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
..+..|...|..++.+++. .+|++|+++| |++|++.... .... .++. ..+..+..+...+++..+|.++.|
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys-~~~sr~~~vt~~~~~~~~Av~t~D- 1119 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS-PEGSRVEKVTMCGNGDQFAVSTKD- 1119 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-ccCCceEEEEeccCCCeEEEEcCC-
Confidence 4566788888888887755 8999999666 9999974221 1111 2221 245667777777788888888888
Q ss_pred CCCCCeEEEEeCCCC--c-----eeEEee--cCCceEEE-EEecC-cc-EEE--e-CCeEEEEEcCCCeeeEEEe--ecc
Q 014007 152 QYPLNKVMIWDDHQS--R-----CIGELS--FRSEVRSV-KLRRD-RI-IVV--L-EQKIFVYNFADLKLLHQIE--TIA 214 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~--~-----~~~~~~--~~~~v~~~-~~~~~-~~-~~~--~-d~~i~i~d~~~~~~~~~~~--~~~ 214 (432)
|.|++.++... + ..+... ..+.+.++ ++... +. .++ + .+.|..||++.......++ ...
T Consensus 1120 ----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 ----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred ----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 99999998762 1 111112 33444443 33322 22 222 2 6789999998865554443 334
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee--eeccCCceeEEEEcCC---CCEEEEEc--CCCceEEEEE
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--IMAHDSRIACFALTQD---GQLLATSS--TKGTLVRIFN 287 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~~i~~~~~sp~---~~~l~~~~--~dg~~i~vwd 287 (432)
+.++.++.+|.+..+++ |+..|.+.+||++-+.... -.++..+|..+..+|- ....++++ ..+. |.+|+
T Consensus 1196 G~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne-vs~wn 1271 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE-VSTWN 1271 (1431)
T ss_pred cceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc-eeeee
Confidence 67889999999986554 4477999999999865432 2345578888887773 24454444 4566 99999
Q ss_pred CCCCceEEEEEeC-----------------CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC-CCCCCCCCCC
Q 014007 288 TLDGTLLQEVRRG-----------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA-RSEPRSTSDP 349 (432)
Q Consensus 288 ~~~~~~~~~~~~~-----------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~ 349 (432)
+.+|.+...+... .+.-......+..-+.++.+|+.|..|+.||....+... ...+......
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence 9999887777643 011112223343445688899999999999998876441 1111111111
Q ss_pred CC-CCCCceeEeec------cc--ce---eecceeeE--------EEEecCCCceEEEEccC-CCEEEEEecCCeEEEEE
Q 014007 350 TL-PTSSLSFIKGV------LP--KY---FSSEWSVA--------QFRLVEGSPYIVAFGHQ-KNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 350 ~~-~~~~~~~~~~~------~~--~~---~~~~~~~~--------~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~v~iw~ 408 (432)
.. .........+. ++ .. ....+... .-..|.+.|+.+++-.. ..+|++++.||.|.||.
T Consensus 1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 00 00001111000 00 00 00000011 12346678999988764 45888999999999994
No 228
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=8.9e-15 Score=126.03 Aligned_cols=197 Identities=15% Similarity=0.098 Sum_probs=144.4
Q ss_pred EEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eee
Q 014007 179 RSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI 254 (432)
Q Consensus 179 ~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~ 254 (432)
..++|+.+|..+++ ||++|+|+......+.....|...|..+.|+|||+.+ ++.| .| ..+||+.+++.. ...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~l--asig-~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFL--ASIG-AD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEE--EEec-CC-ceEEEEeccCchhhhc
Confidence 78999999888884 9999999988877777777888999999999999854 4434 45 899999998622 222
Q ss_pred --eccCCceeEEEEcCCC---C-EEEEEcCCCceEEEEECCCCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007 255 --MAHDSRIACFALTQDG---Q-LLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 255 --~~~~~~i~~~~~sp~~---~-~l~~~~~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
...+.....+.|+.|+ . +|++.-.++..|+.||+...+. ++..+.-.....|.+++.++||+++|.|+.||
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 2234456678888776 2 3333333332277776643322 11111111225799999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEE
Q 014007 326 TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFY 405 (432)
Q Consensus 326 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 405 (432)
.|.|++..+.+.+. ..-+.|...|+.+.|+||.+.+++.+.|....
T Consensus 304 sVai~~~~~lq~~~----------------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQ----------------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred cEEEEEeceeeeeE----------------------------------eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 99999999877431 12346888999999999999999999999999
Q ss_pred EEEecCCC
Q 014007 406 RCQFDPVN 413 (432)
Q Consensus 406 iw~~~~~~ 413 (432)
+..+....
T Consensus 350 v~~l~vd~ 357 (398)
T KOG0771|consen 350 VTKLAVDK 357 (398)
T ss_pred EEEEeecc
Confidence 98886643
No 229
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.3e-13 Score=112.95 Aligned_cols=247 Identities=15% Similarity=0.159 Sum_probs=167.6
Q ss_pred cCCCCCCCeEEEEEcCCC-CEEEEEcCCcEEEEEcCCCeeE----------EEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007 80 TSSSPPPTLLHISFNQDH-GCFAAGTDHGFRIYNCDPFREI----------FRRDFERGGGIGVVEMLFRCNILALVGGG 148 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~-~~l~~~~~~~i~iw~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (432)
........|+|++|-|.+ +-|++|+..+|.||..+..... ....+++.....|..|.|.+++..+++++
T Consensus 135 Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS 214 (445)
T KOG2139|consen 135 LKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTAS 214 (445)
T ss_pred ecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecc
Confidence 334456789999999965 5799999999999987532111 11122233447899999999999999887
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (432)
.+ +..|.|||..++..+.... ..+.+.-+.|+||+.++.. |+..++|+..............+.+...+|+|
T Consensus 215 ~g----sssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWsp 290 (445)
T KOG2139|consen 215 FG----SSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSP 290 (445)
T ss_pred cC----cceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecC
Confidence 54 4889999999998776664 6788999999999988773 99999996554333233333455788899999
Q ss_pred CCCcEEEEeecCCCCcEEEEEccC--C-----------ceee--------eec----cCCceeEEEEcCCCCEEEEEcCC
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYAS--K-----------RTKF--------IMA----HDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~--~-----------~~~~--------~~~----~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
+|+.+++++.| .-++|.+.. + .... +.. --+.+.+++|.|.|.+||+.-..
T Consensus 291 cGsfLLf~~sg----sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg 366 (445)
T KOG2139|consen 291 CGSFLLFACSG----SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG 366 (445)
T ss_pred CCCEEEEEEcC----CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence 99999888744 233443321 1 0000 011 14578999999999999987654
Q ss_pred Cc-------eEEEEECCCCceEEEEEeCC-CcCceEEEEECC---CCCEEEEEeCCCeEEEEEecC
Q 014007 280 GT-------LVRIFNTLDGTLLQEVRRGA-DRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 280 g~-------~i~vwd~~~~~~~~~~~~~~-~~~~i~~~~~s~---~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+. .|.+||.+..-.+.....+. ......-++|+| +|.+|..+-..|.+.-|++.-
T Consensus 367 ~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 367 QSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred CchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeEE
Confidence 32 16778876554433321110 112245566665 677888887889998888754
No 230
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.61 E-value=1.3e-12 Score=115.36 Aligned_cols=329 Identities=12% Similarity=0.071 Sum_probs=208.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC----------C
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ----------Y 153 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~----------~ 153 (432)
..-++..++|||.|++|++....+|.+|.-...... ..+ ....|..+.|+|++.+|++-...|. -
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 556788899999999999999999999997766533 333 3457888999999999999887654 1
Q ss_pred CCCeEEEEeCCCCceeEEee-cCCc--eE-EEEEecCccEEE--eCCeEEEEEcCCCee-eEEEeec-cCCcceEEEecC
Q 014007 154 PLNKVMIWDDHQSRCIGELS-FRSE--VR-SVKLRRDRIIVV--LEQKIFVYNFADLKL-LHQIETI-ANPKGLCAVSQG 225 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~-~~~~--v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~-~~~~~~~-~~~~~~~~~~~~ 225 (432)
..+.+.+||+.+|..+..+. -..+ .+ -+.|+-+..+++ ....++|+++ +... ...+... ...+....++|.
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 23469999999999999888 3333 44 678999998888 5889999997 3322 1122111 245667788887
Q ss_pred CCcEEEEe----ecCCCCcEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEcC-----------CCceEEEEECC
Q 014007 226 VGSLVLVC----PGLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSST-----------KGTLVRIFNTL 289 (432)
Q Consensus 226 ~~~~~~~~----~g~~d~~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~-----------dg~~i~vwd~~ 289 (432)
+++-.+++ .++..+.+++|.+..+..... .-....=..+.|.+.|++|+.--. ..+ ++|+++.
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeec
Confidence 66544332 134678999999876433221 111222346788888888764211 234 8888887
Q ss_pred CCceEEEEEeCCCcCceEEEEECCCCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc---
Q 014007 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP--- 364 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 364 (432)
...+..... ..++|...+|.|.++.+++.+ .+-.+.++|++..-.-...+...+...+++.....++.++-.
T Consensus 264 e~~i~V~~~---~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 264 ERSIPVEKD---LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ccccceecc---ccccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCcccc
Confidence 444433322 458999999999998877654 788899999887521111112222222333333333322110
Q ss_pred --ceeecceeeE---EEEecCCCceEEEEccCCCEEEEEec------CCeEEEEEecCCCCCcceEeeecc
Q 014007 365 --KYFSSEWSVA---QFRLVEGSPYIVAFGHQKNTVVILGM------DGSFYRCQFDPVNGGEMTQLEYNN 424 (432)
Q Consensus 365 --~~~~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~ 424 (432)
..+...-.+. .+.+. ..+-+.|+||++++.+... |..+.||++.-..--++..+.|..
T Consensus 341 ni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p 409 (561)
T COG5354 341 NIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDP 409 (561)
T ss_pred ceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecCchhhhhhhccccC
Confidence 0111111111 22222 3455789999999887644 788999998665544555555544
No 231
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.6e-12 Score=121.98 Aligned_cols=177 Identities=16% Similarity=0.105 Sum_probs=118.8
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
..|.++|...............+....|+|||..++. ++ .|++||+.+++... +...........|+|||+.+
T Consensus 198 ~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred eEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 3677888655444333347788999999999988773 22 69999998876432 32223334568999999988
Q ss_pred EEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCc-eEEEEECCCCceEEEEEeCCCcCceE
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGT-LVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+++........|+++|+.++....+..+.......+|+|||+.|+..+. ++. .|+++|+.+++....... .....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~---g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE---GEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC---CCCCc
Confidence 7654222223578888888877777767667788999999998876654 222 177778877765433221 12234
Q ss_pred EEEECCCCCEEEEEeC-CC--eEEEEEecCCC
Q 014007 308 SLAFSSNAQWLAVSSD-KG--TVHVFNLKVNS 336 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~-dg--~i~iwd~~~~~ 336 (432)
..+|+|||++|+..+. ++ .|.++|+.+++
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 5799999999887654 34 45556766654
No 232
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.9e-14 Score=126.74 Aligned_cols=209 Identities=14% Similarity=0.191 Sum_probs=157.2
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecC--ccEEEe---CC
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD--RIIVVL---EQ 194 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~--~~~~~~---d~ 194 (432)
..+. +|.+.|.++.|+.+|.+|++|++| -.+.|||.-..+.+..+. |...|.++.|-|. ..++++ |.
T Consensus 44 ~eL~-GH~GCVN~LeWn~dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk 117 (758)
T KOG1310|consen 44 AELT-GHTGCVNCLEWNADGELLASGSDD-----TRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK 117 (758)
T ss_pred hhhc-cccceecceeecCCCCEEeecCCc-----ceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence 5565 899999999999999999999999 999999998888888887 9999999999983 445553 88
Q ss_pred eEEEEEcCCC----------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-----------e
Q 014007 195 KIFVYNFADL----------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----------F 253 (432)
Q Consensus 195 ~i~i~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----------~ 253 (432)
.|+++|+... .....+..|...+..++..|++.+.+..+ ++||.++-+|++..... .
T Consensus 118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsa--sEDGtirQyDiREph~c~p~~~~~~~l~n 195 (758)
T KOG1310|consen 118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSA--SEDGTIRQYDIREPHVCNPDEDCPSILVN 195 (758)
T ss_pred eEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEe--cCCcceeeecccCCccCCccccccHHHHH
Confidence 9999999852 23444566777888899999997776554 58999999999873211 1
Q ss_pred eeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCC--------C----------ceEEEEEeCCC--c--------C
Q 014007 254 IMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD--------G----------TLLQEVRRGAD--R--------A 304 (432)
Q Consensus 254 ~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~--------~----------~~~~~~~~~~~--~--------~ 304 (432)
+...--...|+.++| +..+|++|+.|-- .++||.+. + .+++.|..+.. . .
T Consensus 196 y~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 196 YNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred hchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 111223567899999 5578999999998 99999431 1 13444432211 0 1
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
.++-++|+|+|.-|+..-....|+++|+..++..-
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 25678999999887777666789999999887543
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=3.5e-11 Score=109.43 Aligned_cols=241 Identities=20% Similarity=0.210 Sum_probs=158.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcC----C-cEEEEEcCCC--eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 85 PPTLLHISFNQDHGCFAAGTD----H-GFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~----~-~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
......++++|++++|.+... . +|..|.++.. +........ ........++.++++.+++.+.. ..|.
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~-~~g~~p~~i~~~~~g~~l~vany----~~g~ 110 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP-SGGSSPCHIAVDPDGRFLYVANY----GGGS 110 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE-ESSSCEEEEEECTTSSEEEEEET----TTTE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec-cCCCCcEEEEEecCCCEEEEEEc----cCCe
Confidence 345567899999999888764 2 3888988654 444333333 23445567888888877776542 1299
Q ss_pred EEEEeCCC-CceeE---Eeec-----------CCceEEEEEecCccEEEe----CCeEEEEEcCCCe--ee--EEEee-c
Q 014007 158 VMIWDDHQ-SRCIG---ELSF-----------RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLK--LL--HQIET-I 213 (432)
Q Consensus 158 v~iwd~~~-~~~~~---~~~~-----------~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~--~~--~~~~~-~ 213 (432)
|.++++.. |.... .+.+ .....++.++|++++++. .+.|++|++.... .. ..+.. .
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 99999987 43322 2211 345789999999998874 5689999997654 21 22222 2
Q ss_pred cCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc--CCceee---eec------cCCceeEEEEcCCCCEEEEEcCCCce
Q 014007 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTKF---IMA------HDSRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~~---~~~------~~~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
...-+.+.|+|+++.++++. ..++.|.++++. .+.... +.. .......|+++|||++|+++......
T Consensus 191 G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s 268 (345)
T PF10282_consen 191 GSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS 268 (345)
T ss_dssp TSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred CCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence 23345799999999988875 478999999998 332222 111 12257889999999998887654433
Q ss_pred EEEEECC--CCce--EEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 283 VRIFNTL--DGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 283 i~vwd~~--~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
|.+|++. ++++ +..+... ......++++|+|++|+++. .++.|.+|+++.
T Consensus 269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 9999983 3433 3344432 24589999999999999887 678999998864
No 234
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=1.8e-13 Score=130.49 Aligned_cols=243 Identities=17% Similarity=0.276 Sum_probs=164.0
Q ss_pred CCCCCCeEEEEEcC--CCCEEEEEcCCc-EEEEEcCCC---eeEEEeec---c----cCcceeEEEEeeeCC-eEEEecC
Q 014007 82 SSPPPTLLHISFNQ--DHGCFAAGTDHG-FRIYNCDPF---REIFRRDF---E----RGGGIGVVEMLFRCN-ILALVGG 147 (432)
Q Consensus 82 ~~~~~~v~~~~~s~--~~~~l~~~~~~~-i~iw~~~~~---~~~~~~~~---~----~~~~~~v~~~~~~~~-~~~~~s~ 147 (432)
......|+.+.+-. |..+|.+|+++| |+||+--.. +....... . +..+.. .-+.|... |..+++|
T Consensus 1106 ~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1106 AFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred CCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCC-eeeehhhhCCeEEecC
Confidence 34466888888854 345777787555 999974221 11111111 1 111111 23345443 4455555
Q ss_pred CCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEec-CccEEE---eCCeEEEEEcCCC---eeeEEEeeccCC--
Q 014007 148 GPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRR-DRIIVV---LEQKIFVYNFADL---KLLHQIETIANP-- 216 (432)
Q Consensus 148 ~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~---~d~~i~i~d~~~~---~~~~~~~~~~~~-- 216 (432)
+ - ..|+|||......+..+. ....|+++.-+- .|..++ .||.|++||.+.. ..+...+.|...
T Consensus 1185 d-~-----r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1185 D-V-----RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred C-e-----eEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 4 4 899999999888888777 455667665443 345555 4999999998763 345666777766
Q ss_pred cceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---eeecc---CCceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAH---DSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (432)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~---~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~ 290 (432)
|..+.+.+.|-.- ++ +|+.+|.|++||++..... .+..| .+..+++..+++...+|+|+. +. |+||++ .
T Consensus 1259 Iv~~slq~~G~~e-lv-Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~-ikIy~~-~ 1333 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGE-LV-SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QL-IKIYSL-S 1333 (1387)
T ss_pred ceeEEeecCCCcc-ee-eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ce-EEEEec-C
Confidence 7777787777653 33 4679999999999984222 22233 235999999999999999998 77 999997 4
Q ss_pred CceEEEEEeC-----CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 291 GTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 291 ~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|+.+..++.. ...+.+.+++|+|-.-+||+|+.|.+|.||.....+
T Consensus 1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 5555444421 123568999999999999999999999999887654
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=1.1e-12 Score=123.56 Aligned_cols=213 Identities=11% Similarity=0.077 Sum_probs=143.7
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.++|.+..... .+. .+...+....|++++..++...... ....|++||+.+++......+.+.+.+++|+||+
T Consensus 172 l~~~d~~g~~~~---~l~-~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 172 LQVADYDGANPQ---TIT-RSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred EEEEcCCCCCCE---Eee-cCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 667776543322 222 2455678889999998877654320 0157999999988665544466677789999999
Q ss_pred cEEEe----C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007 188 IIVVL----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (432)
Q Consensus 188 ~~~~~----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i 261 (432)
..++. + ..|++||+.+++.. .+..+........|+|+++.+++.+.-.....|.++|+.++....+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 86652 2 36999998876543 33333334456789999988776542112346888888877766666666778
Q ss_pred eEEEEcCCCCEEEEEcCCC---ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC---eEEEEEe
Q 014007 262 ACFALTQDGQLLATSSTKG---TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFNL 332 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~dg---~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd~ 332 (432)
..+.|+|+|++|+.++.++ . |.+||+.++... .+... .......|+|||++|+..+.++ .+++.+.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 8899999999999888775 6 899998876543 33321 2345668999999988877554 3445443
No 236
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.57 E-value=7.2e-15 Score=136.54 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=183.3
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
+|...|.+..|...+..+++|++| ..|+||..+++.++.... |.+.|+.++.+.+..++++ |..|++|.+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd-----~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDD-----RLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCcc-----ceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 788899999999999999999999 999999999999999998 9999999999998888874 7789999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee----e-eccCCceeEEEEcCCCCEEEEEc
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF----I-MAHDSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~----~-~~~~~~i~~~~~sp~~~~l~~~~ 277 (432)
++.++..+.+|.+.|+.++|+|-. +.+.||++++||.+-..... . .....-+.++.|..++..++|++
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999964 23489999999998322111 1 12235577888888999999999
Q ss_pred CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
.|+. -..|.+..... +...+.-+.++.| ..+.+++-.+-.+++|++.++..+.
T Consensus 336 ~d~e-a~n~e~~~l~~--------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H----------------- 389 (1113)
T KOG0644|consen 336 RDGE-ARNHEFEQLAW--------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH----------------- 389 (1113)
T ss_pred CCcc-cccchhhHhhh--------hccceEEEeccccccccceeeeeeeEeeeeecccchhhh-----------------
Confidence 9998 88887543211 1111111122212 2456677778889999999986432
Q ss_pred eeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecCCCCCcceE
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDPVNGGEMTQ 419 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~ 419 (432)
.+.+|.+.+..+.++|-+. ...+++.||...||++-.....+...
T Consensus 390 ------------------~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 390 ------------------NLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred ------------------hhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 3557888899999999554 55589999999999986654443333
No 237
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.9e-12 Score=122.04 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=139.1
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.++|.+..... ... .+...+....|+|++..++..+.+. ....|++||+.+++........+.+....|+|||
T Consensus 181 l~~~d~~g~~~~--~l~--~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 181 LQRSDYDGARAV--TLL--QSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEECCCCCCce--EEe--cCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCC
Confidence 666666544322 222 2556788899999998776543220 0147999999888654433345556678999999
Q ss_pred cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007 188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (432)
Q Consensus 188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i 261 (432)
..++. ++ .|++||+.+++.. .+..+........|+|+++.+++.+.......|+++|+.++....+.......
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~ 333 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYN 333 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 87762 33 6999999877643 34444444556889999998876642222346777787776665554333334
Q ss_pred eEEEEcCCCCEEEEEcCC-C--ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-C--eEEEEEecC
Q 014007 262 ACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLKV 334 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d-g--~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~ 334 (432)
....|+|+|++|+..+.+ + . |.+||+.+++.. .+... .......|+|||++|+..+.+ | .|+++++..
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~-l~~~dl~tg~~~-~lt~~---~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFH-VAAQDLQRGSVR-ILTDT---SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred cceEECCCCCEEEEEEccCCceE-EEEEECCCCCEE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 567899999999876643 2 4 889999887653 33321 122356899999998877643 3 466666643
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.4e-12 Score=120.88 Aligned_cols=215 Identities=13% Similarity=0.069 Sum_probs=134.8
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.++|.+..... ... .....+....|+|++..++....+. ....|++||+.+++........+......|+|||
T Consensus 200 l~i~d~dG~~~~--~l~--~~~~~~~~p~wSPDG~~La~~s~~~--g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 200 LMIADYDGYNEQ--MLL--RSPEPLMSPAWSPDGRKLAYVSFEN--RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEeCCCCCce--Eee--cCCCcccCceECCCCCEEEEEEecC--CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCC
Confidence 555666544332 112 2455777889999998776543210 0146999999887654333334445678999999
Q ss_pred cEEEe----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCce
Q 014007 188 IIVVL----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRI 261 (432)
Q Consensus 188 ~~~~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i 261 (432)
..++. ++ .|+++|+.+++. ..+..+........|+||++.+++.+.......|.++|+.++....+.......
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~ 352 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQN 352 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCC
Confidence 97762 44 588889887654 334334444567899999998776642222345666777776665554333334
Q ss_pred eEEEEcCCCCEEEEEcCC-Cc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC-CC--eEEEEEec
Q 014007 262 ACFALTQDGQLLATSSTK-GT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVHVFNLK 333 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d-g~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~iwd~~ 333 (432)
...+|+|||++|+..+.+ +. .|.++|+.+++.. .+... .......|+|||++|+..+. +| .+++++.+
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 567899999998876653 32 1666788887653 33321 12234589999998877653 33 36666764
No 239
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=1e-12 Score=112.43 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=169.3
Q ss_pred CCCCCeEEEEEcCCCC--EEEEE-cCCcEEEEEcCCCeeEEEe----ecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 83 SPPPTLLHISFNQDHG--CFAAG-TDHGFRIYNCDPFREIFRR----DFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~--~l~~~-~~~~i~iw~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
.....|..++|.-+++ .|... .+..+..+.+......... .. ......|..+......+... ..+
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~-~l~~~~I~gl~~~dg~Litc--~~s----- 124 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTV-SLGTKSIKGLKLADGTLITC--VSS----- 124 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccccc-ccccccccchhhcCCEEEEE--ecC-----
Confidence 3456788899987765 44444 3555666666544332111 11 13455666666554433333 333
Q ss_pred CeEEEEeCCCCc----eeEEeecCCceEEEEEecCccEEE-eC-----CeEEEEEcCCCeeeEEEeeccC---------C
Q 014007 156 NKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRIIVV-LE-----QKIFVYNFADLKLLHQIETIAN---------P 216 (432)
Q Consensus 156 ~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~-~d-----~~i~i~d~~~~~~~~~~~~~~~---------~ 216 (432)
|.+.+|..+.+. .+..+.....+..+.-.+....++ +. ..+.|||+...+.+.+-+...+ .
T Consensus 125 G~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 125 GNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred CcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeee
Confidence 899999987543 344455556777777777655555 33 4689999988765554332221 1
Q ss_pred cceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (432)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~ 294 (432)
++.+.|-+......+++ ++.-+.|++||.+. +++..+.-.+.+|+++...|+|+++++|..-+. +..||++.++.+
T Consensus 205 ~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~-l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ-LAKFDLRGGKLL 282 (412)
T ss_pred eccceecCCCCCceEEE-EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch-hheecccCceee
Confidence 23456655522333333 34679999999987 456667777889999999999999999999999 999999999988
Q ss_pred EE-EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 295 QE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 295 ~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.. +.+ -.+.|.++..+|.+++||+++-|+.|+|+|+++.+.+
T Consensus 283 g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 283 GCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 87 443 5589999999999999999999999999999996644
No 240
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=5.8e-13 Score=112.00 Aligned_cols=244 Identities=12% Similarity=0.213 Sum_probs=162.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe---eEEEeeccc-----------CcceeEEEEeeeCCe--EEEec
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR---EIFRRDFER-----------GGGIGVVEMLFRCNI--LALVG 146 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~---~~~~~~~~~-----------~~~~~v~~~~~~~~~--~~~~s 146 (432)
..+-|.+|.|..+|.+||+|..+| |.+|.-+... ..+...++. .-...|..+.|..++ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 467899999999999999999777 8888653222 112222220 012356677776543 33444
Q ss_pred CCCCCCCCCCeEEEEeCCCCc-----------------------------------eeEEee--cCCceEEEEEecCccE
Q 014007 147 GGPDPQYPLNKVMIWDDHQSR-----------------------------------CIGELS--FRSEVRSVKLRRDRII 189 (432)
Q Consensus 147 ~~~d~~~~~~~v~iwd~~~~~-----------------------------------~~~~~~--~~~~v~~~~~~~~~~~ 189 (432)
...| .+|++|-+.... +.+.+. |.-.|+++.++.|...
T Consensus 104 stNd-----ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 104 STND-----KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred ecCC-----cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 4445 899999764321 122333 5667899999998877
Q ss_pred EEe--CCeEEEEEcCCCe-eeE--EEee-----ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----eee
Q 014007 190 VVL--EQKIFVYNFADLK-LLH--QIET-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFI 254 (432)
Q Consensus 190 ~~~--d~~i~i~d~~~~~-~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~ 254 (432)
+.+ |=.|.+|+++--. ... .++. ....|+...|+|....+++-+ +..|.|++.|++...+ +.+
T Consensus 179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YS--SSKGtIrLcDmR~~aLCd~hsKlf 256 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYS--SSKGTIRLCDMRQSALCDAHSKLF 256 (433)
T ss_pred EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEe--cCCCcEEEeechhhhhhcchhhhh
Confidence 774 4489999987432 211 1211 223567788999877765443 4689999999995221 111
Q ss_pred e------------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC-CCCceEEEEEeCCCc----------C---ceEE
Q 014007 255 M------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQEVRRGADR----------A---EIYS 308 (432)
Q Consensus 255 ~------------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~-~~~~~~~~~~~~~~~----------~---~i~~ 308 (432)
. .--..|..+.|+++|+|+++-..- + |++||+ ...+++.++..|..- . .-..
T Consensus 257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred ccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 1 123468899999999999887655 4 999999 566777777653110 1 2356
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
++|+.++.++++|+..+.+++|++..+.
T Consensus 335 c~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 335 CSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EEEcCCcceEecccccceEEEecCCCCc
Confidence 8999999999999999999999976654
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=2e-13 Score=121.12 Aligned_cols=221 Identities=12% Similarity=0.129 Sum_probs=141.2
Q ss_pred CCCCEEEEEcCCc-EEEEEcCCCeeEEEeecc---cCcceeEEEEeeeCC--eEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCN--ILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 95 ~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
|++--|.+|-+.+ |++.+....+. .+.+. .-....++++.|-+. ..++++- .+ |.+++||..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~--sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~-~s-----Gnlyly~~~---- 250 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEV--SKLFNEERLINKSSVTCIKWVPGSDSLFLVAH-AS-----GNLYLYDKE---- 250 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHH--HHhhhhcccccccceEEEEEEeCCCceEEEEE-ec-----CceEEeecc----
Confidence 3444566665444 76666432111 01111 013467788888653 4444443 33 899999851
Q ss_pred eEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007 169 IGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (432)
Q Consensus 169 ~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 248 (432)
+.....-.+-...+++..+..+..... .+..++..+......+..++|+|||++++.++ .||.++|||+.+
T Consensus 251 ---~~~~~t~p~~~~~k~~~~f~i~t~ksk---~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt 321 (636)
T KOG2394|consen 251 ---IVCGATAPSYQALKDGDQFAILTSKSK---KTRNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDT 321 (636)
T ss_pred ---ccccCCCCcccccCCCCeeEEeeeecc---ccCCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccH
Confidence 111111111112233333332111111 11244455555566888999999999776654 899999999998
Q ss_pred Ccee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC--------------
Q 014007 249 KRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-------------- 313 (432)
Q Consensus 249 ~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~-------------- 313 (432)
.++. .++..-+...|++|||||+||++|++|.- |.||.+..++.+..-. .|+.+|..++|.|
T Consensus 322 ~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL-VtVwSf~erRVVARGq--GHkSWVs~VaFDpytt~~ee~~~~~~~ 398 (636)
T KOG2394|consen 322 QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL-VTVWSFEERRVVARGQ--GHKSWVSVVAFDPYTTSTEEWNNFSGM 398 (636)
T ss_pred HHHHHHHHhhccceEEEEEcCCccEEEecCCcce-EEEEEeccceEEEecc--ccccceeeEeecccccccccccccccc
Confidence 6553 34556678999999999999999999999 9999999999887665 4889999999982
Q ss_pred -----------------C----C-------------CEEEEEeCCCeEEEEEecCCCCCC
Q 014007 314 -----------------N----A-------------QWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 314 -----------------~----~-------------~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
+ + -.|.+.+.|-.+.+||+......+
T Consensus 399 ~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 399 DSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 1 156678889999999998765433
No 242
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.53 E-value=3.2e-13 Score=128.91 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=144.3
Q ss_pred CceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCc--ceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007 176 SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPK--GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 250 (432)
..|....+..+...++ .++.+.+||...+.....+....... .++-+--..+.+++++ |+.-+.|.+|+.....
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~-gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIAS-GSVFGEIIVWKPHEDN 166 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEe-ccccccEEEEeccccC
Confidence 3344344444444443 48899999988877666554322211 1122223344566664 6688999999987633
Q ss_pred e-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 251 T-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 251 ~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
. ..+.+|++.|.++.++-||+++++.+.|.+ +|+|++.+.+.+.... -.|...++.++|.|+ .+++++.|-+.++
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~-fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTG-FGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccc-ccccceeEEEEeccc--eeEEeccceEEEE
Confidence 3 358899999999999999999999999999 9999999988776222 238899999999998 8999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
|+....+ +..++.|. ..++.++..++...+++++.||.+++|+
T Consensus 243 W~~~~~~------------------------------------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 243 WGVNGTQ------------------------------------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred Eecccce------------------------------------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 9665443 22344554 4589999999999999999999999998
Q ss_pred ecC
Q 014007 409 FDP 411 (432)
Q Consensus 409 ~~~ 411 (432)
+.-
T Consensus 287 l~~ 289 (967)
T KOG0974|consen 287 LNG 289 (967)
T ss_pred hhc
Confidence 855
No 243
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.2e-10 Score=99.52 Aligned_cols=275 Identities=11% Similarity=0.055 Sum_probs=178.3
Q ss_pred CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--Cce--eEEee-cCCceE
Q 014007 105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--SRC--IGELS-FRSEVR 179 (432)
Q Consensus 105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--~~~--~~~~~-~~~~v~ 179 (432)
+.+|++|++++..................-++++++...|.++..+.. .|.|.-|.+.. |+. +.... ...+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~--~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE--EGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC--cCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 556999999743332211111246677788999999876665543311 27787777764 433 22222 344448
Q ss_pred EEEEecCccEEEe----CCeEEEEEcCC-CeeeEE--EeeccCC----------cceEEEecCCCcEEEEeecCCCCcEE
Q 014007 180 SVKLRRDRIIVVL----EQKIFVYNFAD-LKLLHQ--IETIANP----------KGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 180 ~~~~~~~~~~~~~----d~~i~i~d~~~-~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
.+++++++++++. .|.|.++-+++ |.+... +..|... +....+.|+++.+++..- .-..|.
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~ 170 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIF 170 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEE
Confidence 8999999998884 68999999866 433221 1122222 567889999987654432 345788
Q ss_pred EEEccCCceeee----eccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCC-ceEEEEEeC-------CCcCceEEE
Q 014007 243 VEHYASKRTKFI----MAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDG-TLLQEVRRG-------ADRAEIYSL 309 (432)
Q Consensus 243 i~d~~~~~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~-~~~~~~~~~-------~~~~~i~~~ 309 (432)
+|++..+.+... .......+.|.|+|++++..+.++ +++ |.+|..... ..+..++.. ........|
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st-V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST-VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE-EEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 999987554322 234566789999999998876654 677 999998763 233333221 112467889
Q ss_pred EECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007 310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF 388 (432)
Q Consensus 310 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (432)
..++||++|.++. ....|.+|.+...... +.+ +.....+...-....|
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~-----------------L~~--------------~~~~~teg~~PR~F~i 298 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGK-----------------LEL--------------VGITPTEGQFPRDFNI 298 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCE-----------------EEE--------------EEEeccCCcCCcccee
Confidence 9999999998875 3447888888765311 111 1111222233678899
Q ss_pred ccCCCEEEEEecC-CeEEEEEecCCCCC
Q 014007 389 GHQKNTVVILGMD-GSFYRCQFDPVNGG 415 (432)
Q Consensus 389 s~~~~~l~~~~~d-g~v~iw~~~~~~~~ 415 (432)
+++|++|+++.++ ..|.+|..|.++|.
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 9999999999985 46999999998875
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=2.7e-12 Score=114.83 Aligned_cols=132 Identities=8% Similarity=0.185 Sum_probs=102.4
Q ss_pred eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE
Q 014007 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (432)
+++++++....+...+ ...++|.++.|++++..+.++. |..-..+.|||++...+..+. +++=+++-|+|.|++|+
T Consensus 252 ~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr~~~v~df~--egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLRGKPVFDFP--EGPRNTAFFNPHGNIIL 327 (566)
T ss_pred eEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEE-ecccceEEEEcCCCCEeEeCC--CCCccceEECCCCCEEE
Confidence 4555555422222222 2367899999999999887665 778899999999988776653 56678899999999998
Q ss_pred EEcC---CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC------CCeEEEEEecCC
Q 014007 275 TSST---KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD------KGTVHVFNLKVN 335 (432)
Q Consensus 275 ~~~~---dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~ 335 (432)
.++. .|. |.|||+.+.+++..+.. ..-+-+.|+|||++|++++. |+.++||+....
T Consensus 328 lAGFGNL~G~-mEvwDv~n~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 328 LAGFGNLPGD-MEVWDVPNRKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EeecCCCCCc-eEEEeccchhhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 8775 467 99999999999888874 34567899999999998873 788999998653
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=9e-12 Score=116.10 Aligned_cols=216 Identities=11% Similarity=0.077 Sum_probs=135.1
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEE--E-ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEe
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA--L-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR 184 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~ 184 (432)
|.+.|.+..... .+. ........-.|+|++.. + .....+. ...|++.++..++........+.....+|+
T Consensus 167 l~~~d~dG~~~~---~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g---~~~I~~~~l~~g~~~~lt~~~g~~~~p~wS 239 (428)
T PRK01029 167 LWSVDYDGQNLR---PLT-QEHSLSITPTWMHIGSGFPYLYVSYKLG---VPKIFLGSLENPAGKKILALQGNQLMPTFS 239 (428)
T ss_pred EEEEcCCCCCce---Ecc-cCCCCcccceEccCCCceEEEEEEccCC---CceEEEEECCCCCceEeecCCCCccceEEC
Confidence 555565544332 232 23345567789999743 3 2222220 157899999888655444456666778999
Q ss_pred cCccEEEe----CC--e--EEEEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEE--EccC--C
Q 014007 185 RDRIIVVL----EQ--K--IFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE--HYAS--K 249 (432)
Q Consensus 185 ~~~~~~~~----d~--~--i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~--d~~~--~ 249 (432)
|||+.++. +| . +.+|++..+ +...............+|+|||+.+++++ ..+|...+| ++.. +
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECccccc
Confidence 99988773 22 3 444676652 32222222223345689999999887664 234544444 4432 3
Q ss_pred ceeeeeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC---
Q 014007 250 RTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD--- 323 (432)
Q Consensus 250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--- 323 (432)
....+..+...+....|+|||+.|+..+.+ .. |++||+.+++...... ....+....|+|||++|+....
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~-I~v~dl~~g~~~~Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ-ICVYDLATGRDYQLTT---SPENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcE-EEEEECCCCCeEEccC---CCCCccceEECCCCCEEEEEECCCC
Confidence 344555555677889999999988876543 35 9999998887654332 2245678999999998875442
Q ss_pred CCeEEEEEecCCC
Q 014007 324 KGTVHVFNLKVNS 336 (432)
Q Consensus 324 dg~i~iwd~~~~~ 336 (432)
...|+++|+.+++
T Consensus 394 ~~~L~~vdl~~g~ 406 (428)
T PRK01029 394 ESELYLISLITKK 406 (428)
T ss_pred CceEEEEECCCCC
Confidence 3568888887765
No 246
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=8.9e-12 Score=111.34 Aligned_cols=294 Identities=16% Similarity=0.168 Sum_probs=189.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC------CCCeEEE
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY------PLNKVMI 160 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~------~~~~v~i 160 (432)
.=+.+.|||-|.||++-...||.+|--...... +.+. ...|.-+.|+|+..+|++-+..|.- ....++|
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~--~RF~---Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGESFDRI--QRFY---HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCccHHHH--Hhcc---CCCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 346789999999999999999999976555444 4442 3456778899999999987765432 2368999
Q ss_pred EeCCCCceeEEeec---CCceE-EEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 161 WDDHQSRCIGELSF---RSEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 161 wd~~~~~~~~~~~~---~~~v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
||+.+|...+.+.. ...++ -..||.|+++++ ..+.|.||+.....++..-...-..|..+.|+|.++.++.-+.
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 99999998888872 22233 358999999999 4789999997764443322223456777889998765444332
Q ss_pred cCC--CCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEc----------CCCceEEEEECCCCce-EEEEEeC
Q 014007 235 GLQ--KGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSS----------TKGTLVRIFNTLDGTL-LQEVRRG 300 (432)
Q Consensus 235 g~~--d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~----------~dg~~i~vwd~~~~~~-~~~~~~~ 300 (432)
... -..+.+..+.++ .++...-|.-.=..+-|-.+|.+|+.-- .-.. +.|+.++.... +..+.
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n-~eIfrireKdIpve~ve-- 443 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSN-LEIFRIREKDIPVEVVE-- 443 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEee-EEEEEeeccCCCceeee--
Confidence 211 134455555443 2233223332333466777888876421 1123 66777665543 33333
Q ss_pred CCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR 377 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (432)
....|...+|-|.|..+++-+ ...++.+|.+++...... + +..+
T Consensus 444 -lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~-----------------l--------------Vk~~- 490 (698)
T KOG2314|consen 444 -LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS-----------------L--------------VKEL- 490 (698)
T ss_pred -cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh-----------------h--------------hhhh-
Confidence 447899999999999887654 345789998885221000 0 0011
Q ss_pred ecCCCceEEEEccCCCEEEEEe---cCCeEEEEEecCCCCCcceEeee
Q 014007 378 LVEGSPYIVAFGHQKNTVVILG---MDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 378 ~~~~~v~~~~~s~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
.....+.+-|+|.|++++.++ ..|.+..++.+...-+.+...++
T Consensus 491 -dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh 537 (698)
T KOG2314|consen 491 -DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH 537 (698)
T ss_pred -cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc
Confidence 112467899999999988764 46889999988644444444333
No 247
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=122.21 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=147.9
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQ 152 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~ 152 (432)
.....+.+|.+-|+|+.|+.+|.+|++|+|+. +.|||.-..+.. ..+..+|...|.+..|-| +...+++|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhccee--eeeecccccceeEEeeeccCCCeEEEeccCc--
Confidence 34567899999999999999999999999888 999997655444 444457999999998866 56788888888
Q ss_pred CCCCeEEEEeCCCC----------ceeEEee-cCCceEEEEEecCccEEE---e-CCeEEEEEcCCCeee-E--------
Q 014007 153 YPLNKVMIWDDHQS----------RCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADLKLL-H-------- 208 (432)
Q Consensus 153 ~~~~~v~iwd~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~~~~-~-------- 208 (432)
..|+++|+... +....+. |...|..|+..|++-.++ + ||+|+-+|++..... .
T Consensus 117 ---k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 117 ---KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred ---ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHH
Confidence 99999998742 2233344 888899999998874333 2 999999999873211 1
Q ss_pred -EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-------------------ceeee-eccC--------C
Q 014007 209 -QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-------------------RTKFI-MAHD--------S 259 (432)
Q Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-------------------~~~~~-~~~~--------~ 259 (432)
.+....-...++.++|...+.+ +. |+.|.-.++||.+.. .+..+ .+|- .
T Consensus 194 ~ny~~~lielk~ltisp~rp~~l-aV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYL-AV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR 271 (758)
T ss_pred HHhchhhheeeeeeecCCCCceE-Ee-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence 1111112335788999877654 43 458999999995420 01111 1221 1
Q ss_pred ---ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 260 ---RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 260 ---~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
.++-+.|+|+|.-|+..-.... |++||+..++....
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEh-VYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEH-VYLFDVNEDKSPTP 310 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeE-EEEEeecCCCCcee
Confidence 2566889999987766554455 99999987654443
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1e-10 Score=99.89 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=173.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc----CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT----DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~----~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
.-.+...++-|+|+|++++|.++. +++|.-|.++. ++..+..... .....-..++.++++.+++++.. .
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY----~ 109 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANY----H 109 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEc----c
Confidence 344667888999999999888875 23488888875 4444333322 23333377888999988888763 3
Q ss_pred CCeEEEEeCCC-Cc---eeEEeecCCc----------eEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEe---ec
Q 014007 155 LNKVMIWDDHQ-SR---CIGELSFRSE----------VRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIE---TI 213 (432)
Q Consensus 155 ~~~v~iwd~~~-~~---~~~~~~~~~~----------v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~---~~ 213 (432)
.|.|.++-+.. |. .+..+.|.+. +....+.|++++++. -.+|.+|++.+|++...-. ..
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~ 189 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP 189 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence 58999999865 43 3344556665 888999999998884 4689999999876532211 12
Q ss_pred cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cceeeeec---------cCCceeEEEEcCCCCEEEEEcCCCce
Q 014007 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMA---------HDSRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~---------~~~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
...-+.+.|+|+++..++++ --+++|.+|..+. +++..++. -..+..+|.+++||++|.++..--..
T Consensus 190 G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~ds 267 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDS 267 (346)
T ss_pred CCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCe
Confidence 23446799999999998886 5789999999887 44444332 23467789999999999887654333
Q ss_pred EEEEECCCC-ceEEEEEe-CCCcCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCC
Q 014007 283 VRIFNTLDG-TLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKVNS 336 (432)
Q Consensus 283 i~vwd~~~~-~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~ 336 (432)
|.+|.+... ..+..+.. ..+......+.|+++|++|+++.. +..|.+|.++...
T Consensus 268 I~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 268 IAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 888876543 22322222 123344789999999999998884 4579999887544
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.7e-12 Score=116.54 Aligned_cols=219 Identities=11% Similarity=0.028 Sum_probs=133.7
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccE--EE--e--C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII--VV--L--E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
..|.+.|...+...........+..-+|+|||.. ++ + + ..|++.++..++..+ +..........+|+|||+
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 5788888765544333335666778899999864 32 2 3 368999998775433 333344455689999999
Q ss_pred cEEEEee--cCCCCcEEEEEccC---Cceeeeec-cCCceeEEEEcCCCCEEEEEc-CCCceEEEE--ECCC-CceEEEE
Q 014007 228 SLVLVCP--GLQKGQVRVEHYAS---KRTKFIMA-HDSRIACFALTQDGQLLATSS-TKGTLVRIF--NTLD-GTLLQEV 297 (432)
Q Consensus 228 ~~~~~~~--g~~d~~i~i~d~~~---~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vw--d~~~-~~~~~~~ 297 (432)
.++++.. |..+..+.+|++.. +....+.. +.......+|+|||+.|+..+ .+|. ..+| ++.. +.....+
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccccceEEe
Confidence 8877652 22233344466654 23333332 234456789999999877665 4564 4444 4432 2333444
Q ss_pred EeCCCcCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007 298 RRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 298 ~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
.. ....+....|||||++|+..+.+ ..|++||+.+++..
T Consensus 323 t~--~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~------------------------------------ 364 (428)
T PRK01029 323 TK--KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY------------------------------------ 364 (428)
T ss_pred cc--CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE------------------------------------
Confidence 42 22456789999999999876543 46999999887621
Q ss_pred EEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEecCCCC
Q 014007 375 QFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFDPVNG 414 (432)
Q Consensus 375 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~ 414 (432)
.+......+....|+|||+.|+... .+|.-.||.++...+
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 1222223456789999999887544 334434444444433
No 250
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=5.8e-12 Score=114.34 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=148.4
Q ss_pred EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 89 LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 89 ~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
..+.|+|||+++.+++ |+.|.++|+.+.+.. ..+. -......+++++++.+++.+... ++.+.++|.++.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v--~~i~--~G~~~~~i~~s~DG~~~~v~n~~----~~~v~v~D~~tle 111 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVV--ATIK--VGGNPRGIAVSPDGKYVYVANYE----PGTVSVIDAETLE 111 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEE--EEEE---SSEEEEEEE--TTTEEEEEEEE----TTEEEEEETTT--
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEE--EEEe--cCCCcceEEEcCCCCEEEEEecC----CCceeEecccccc
Confidence 4478999999888877 555999999988866 5554 44556789999999888766532 2899999999999
Q ss_pred eeEEeec--------CCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeee--EEEeeccCCcceEEEecCCCcEEEEe
Q 014007 168 CIGELSF--------RSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 168 ~~~~~~~--------~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
.++.+.. ...+.++..++... +++. .+.|.+.|..+.+.+ ..+.. ........|+|++++++++.
T Consensus 112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-GRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEE
T ss_pred ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc-cccccccccCcccceeeecc
Confidence 9988762 23567887888776 4443 478888887765433 23322 23344688999998876654
Q ss_pred ecCCCCcEEEEEccCCcee--------------------------------------------------------eeecc
Q 014007 234 PGLQKGQVRVEHYASKRTK--------------------------------------------------------FIMAH 257 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~--------------------------------------------------------~~~~~ 257 (432)
. .+..|.++|..++... .+...
T Consensus 191 ~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 191 N--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp G--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred c--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 2 3456777776653211 11111
Q ss_pred CCceeEEEEcCCCCEEEEE----cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe--CCCeEEEEE
Q 014007 258 DSRIACFALTQDGQLLATS----STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS--DKGTVHVFN 331 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~----~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~iwd 331 (432)
... .-+..+|+++++.+. ...+. |.++|.++.+.+..+.... ...+..+.|++||+++..+. .++.|.+||
T Consensus 269 G~g-lFi~thP~s~~vwvd~~~~~~~~~-v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 269 GGG-LFIKTHPDSRYVWVDTFLNPDADT-VQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp SSS---EE--TT-SEEEEE-TT-SSHT--EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred CCc-ceeecCCCCccEEeeccCCCCCce-EEEEECcCcceeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 112 445679999999988 34467 9999999998877776321 13489999999999766554 344899999
Q ss_pred ecCCCCCC
Q 014007 332 LKVNSGSA 339 (432)
Q Consensus 332 ~~~~~~~~ 339 (432)
..+.+.++
T Consensus 346 ~~Tl~~~~ 353 (369)
T PF02239_consen 346 AKTLKEKK 353 (369)
T ss_dssp TTTTEEEE
T ss_pred CCCcEEEE
Confidence 99988543
No 251
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.50 E-value=3.1e-10 Score=100.80 Aligned_cols=259 Identities=11% Similarity=0.134 Sum_probs=157.9
Q ss_pred CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC----------CCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP----------DPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~----------d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
+.|.+.|.++.+.. ..+..+..... + .++++..+..+.. + ..|.+||..+++.+.++...
T Consensus 27 ~~v~ViD~~~~~v~--g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~-----d~V~v~D~~t~~~~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRVL--GMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRT-----DYVEVIDPQTHLPIADIELP 96 (352)
T ss_pred ceEEEEECCCCEEE--EEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCC-----CEEEEEECccCcEEeEEccC
Confidence 45999998887655 34431222222 3 6777655444333 4 79999999999999998843
Q ss_pred Cc--------eEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 176 SE--------VRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 176 ~~--------v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
.. ...++++|||++++. +..|.++|+.+++.+.++.... .......+... . ++.| .||...
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~-~~~~---~Dg~~~ 170 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDT-F-FMHC---RDGSLA 170 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCc-c-EEEe---ecCceE
Confidence 33 337899999998872 6799999999999998887532 22222222111 1 1222 244444
Q ss_pred EEEccC-Cc-----eeeeeccCCcee-EEEEcC-CCCEEEEEcCCCceEEEEECCCC-----ceEEEEEeC-----CCcC
Q 014007 243 VEHYAS-KR-----TKFIMAHDSRIA-CFALTQ-DGQLLATSSTKGTLVRIFNTLDG-----TLLQEVRRG-----ADRA 304 (432)
Q Consensus 243 i~d~~~-~~-----~~~~~~~~~~i~-~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~-----~~~~~~~~~-----~~~~ 304 (432)
...+.. +. ...+.....++. .-.|.+ +|+++.+..+ |. |.+.|+... +....+... -..+
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~ 248 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAEKADGWRPG 248 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccccccccCCC
Confidence 333322 11 011111000000 003455 8888888777 88 999996433 333322211 1224
Q ss_pred ceEEEEECCCCCEEEEEe----------CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007 305 EIYSLAFSSNAQWLAVSS----------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
.+.-++++++++.+++.. ..+.|.++|..+.+.+ .
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi-----------------------------------~ 293 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL-----------------------------------R 293 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE-----------------------------------E
Confidence 455599999999888743 2257999999888732 1
Q ss_pred EEEecCCCceEEEEccCCC-EEEEEe-cCCeEEEEEecCCCCCcceEe
Q 014007 375 QFRLVEGSPYIVAFGHQKN-TVVILG-MDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 375 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~ 420 (432)
.+.. ...+..++|+||++ +|++.+ .++.|.++| ..+++.+..+
T Consensus 294 ~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD--~~t~k~i~~i 338 (352)
T TIGR02658 294 KIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD--AETGKELSSV 338 (352)
T ss_pred EEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE--CcCCeEEeee
Confidence 2222 23588999999999 888777 578899955 5666666655
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=9.5e-12 Score=106.56 Aligned_cols=238 Identities=13% Similarity=0.104 Sum_probs=167.9
Q ss_pred cceeEEEEeeeC--CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe------e-cCCceEEEEEecCccEEE-eCCeEE
Q 014007 128 GGIGVVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL------S-FRSEVRSVKLRRDRIIVV-LEQKIF 197 (432)
Q Consensus 128 ~~~~v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~------~-~~~~v~~~~~~~~~~~~~-~d~~i~ 197 (432)
....+..++|.. +...+.....+ ..+..+.+....+...+ . ...+|.+++....-.+.+ .+|.+.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~-----~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSAD-----DDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccC-----cccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEE
Confidence 344566666643 44566666444 56777776666554443 1 456677776654444444 489999
Q ss_pred EEEcCCCe----eeEEEeeccCCcceEEEecCCCcEEEEeecCCC--CcEEEEEccCCceeeeecc-----------CCc
Q 014007 198 VYNFADLK----LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYASKRTKFIMAH-----------DSR 260 (432)
Q Consensus 198 i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~~~~~~~~-----------~~~ 260 (432)
+|..+.+. .+..+..+ ..+..+.-++...++ ++ .|+.. ..+.+||+... .+.+.+- .-+
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~I-va-~GGke~~n~lkiwdle~~-~qiw~aKNvpnD~L~LrVPvW 204 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYI-VA-TGGKENINELKIWDLEQS-KQIWSAKNVPNDRLGLRVPVW 204 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCce-Ee-cCchhcccceeeeecccc-eeeeeccCCCCccccceeeee
Confidence 99987432 33334333 233344445544443 34 35577 88999999886 4334321 235
Q ss_pred eeEEEEcCC--CCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 261 IACFALTQD--GQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 261 i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
++++.|-+. ...||+++.-+. ||+||.+.+ +++..|.. .+.+++++...|+|+++++|..-|.+..||++.++.
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~--~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDF--LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eccceecCCCCCceEEEEeccee-EEEecCcccCcceeEecc--ccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 788999887 788999999999 999999876 45666664 457899999999999999999999999999999873
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.. ..+++-.|.|+.+..+|..++|+++|-|..|+|+++..
T Consensus 282 ~g----------------------------------~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 282 LG----------------------------------CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ec----------------------------------cccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 21 12556678899999999999999999999999988865
No 253
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.1e-12 Score=115.23 Aligned_cols=253 Identities=17% Similarity=0.130 Sum_probs=180.4
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecC---ccEEE--eCCeEEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRD---RIIVV--LEQKIFVY 199 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~---~~~~~--~d~~i~i~ 199 (432)
.|.+.|..+.|+..+..+++++.| ..|.+||+..++.+..+. |...|....|-|. ..++. .||.+++=
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD-----~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDD-----LQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred CCCCccceeeecccCceeeccCcc-----ceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 799999999999999999999999 999999999999888887 8888888888774 33333 28888887
Q ss_pred EcCC-Cee--eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeeccCC---ceeEEEEcCC
Q 014007 200 NFAD-LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDS---RIACFALTQD 269 (432)
Q Consensus 200 d~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~---~i~~~~~sp~ 269 (432)
.+.. +.+ ...+..|.+++..+++.|+....++.+ +.|+.+.-+|++..... ....+.. ....++..|.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~--geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSC--GEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCccccc--ccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 6554 322 344556888999999999998887665 47999999999884322 2233444 5778999995
Q ss_pred C-CEEEEEcCCCceEEEEECCCCce------EEEEEeC----CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 270 G-QLLATSSTKGTLVRIFNTLDGTL------LQEVRRG----ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 270 ~-~~l~~~~~dg~~i~vwd~~~~~~------~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
. ..+++|+.|.. +++||.+.-.. +..+..+ .....|++++|+.++.-|++...|-.|++|.-.-+...
T Consensus 293 nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 4 48999999999 99999875321 2222221 13357999999988887777778888999944333311
Q ss_pred CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC--CceEEE-EccCCCEEEEEecCCeEEEEEe
Q 014007 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG--SPYIVA-FGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~-~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
...+ .- ....+.+ ..+++|.+ .|..+- |.|...++++|+.-|.|+||+=
T Consensus 372 ~p~~------------~s-~~~~~~k---------~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 372 EPDP------------SS-PREQYVK---------RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred CCCC------------Cc-chhhccc---------hhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 1100 00 0001111 12566653 466665 4678999999999999999984
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.5e-10 Score=107.30 Aligned_cols=213 Identities=11% Similarity=0.032 Sum_probs=139.7
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccE-EEe------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII-VVL------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..|.+-|.. |...+.+...+......|+|||+. ++. +..|+++|+.+++..... ...+......|+|||+.
T Consensus 169 ~~l~~~d~d-g~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYT-LTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCC-CCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCE
Confidence 567777754 333444443347788999999974 442 246999999887654433 23444556789999998
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-C--ceEEEEECCCCceEEEEEeCCCcCc
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
+++......+..|.++|+.++....+..+........|+|||+.|+..+.. + . |++.|+.+++..+....+ .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~-Iy~~dl~~g~~~rlt~~g---~- 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN-IFMKKLNSGSVEQVVFHG---K- 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCce-EEEEECCCCCeEeCccCC---C-
Confidence 877654344677888898888777766555444567899999887766643 2 4 888899887764433321 1
Q ss_pred eEEEEECCCCCEEEEEeCC---------CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE
Q 014007 306 IYSLAFSSNAQWLAVSSDK---------GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF 376 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (432)
....|||||++|+..... ..|++.|+.++... .+
T Consensus 322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~------------------------------------~L 364 (419)
T PRK04043 322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR------------------------------------RL 364 (419)
T ss_pred -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE------------------------------------EC
Confidence 124899999998876643 26777777766411 11
Q ss_pred EecCCCceEEEEccCCCEEEEEecC-CeEEEEEecCCC
Q 014007 377 RLVEGSPYIVAFGHQKNTVVILGMD-GSFYRCQFDPVN 413 (432)
Q Consensus 377 ~~~~~~v~~~~~s~~~~~l~~~~~d-g~v~iw~~~~~~ 413 (432)
... +......|+|||+.|+..+.+ |.-.+|-++...
T Consensus 365 T~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 365 TAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 111 122358899999988776654 455566666643
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.7e-11 Score=112.85 Aligned_cols=287 Identities=14% Similarity=0.176 Sum_probs=193.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee-------------EEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE-------------IFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (432)
.......|+.|+.+..++|+|+.+| +++..+.+... ...+.+. +|...|.-+.|+.+...+.+++
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccccC
Confidence 3456789999999999999999655 88888753221 1223454 8999999999999999999999
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeee-EEEeeccCCcceEE
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLL-HQIETIANPKGLCA 221 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~ 221 (432)
.+ |.|.+|-+-.|.-..++. .++.|.+++|+.||..++ .||.|.+=.+...+.. +.+++ .....+.
T Consensus 91 t~-----GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ 163 (1189)
T KOG2041|consen 91 TS-----GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVL 163 (1189)
T ss_pred CC-----ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--hecccee
Confidence 99 999999998886443332 577899999999998877 3898887776543221 12221 2234688
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCce--------ee----eeccCCceeEEEEc--------CCCCEEEEEcCCCc
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT--------KF----IMAHDSRIACFALT--------QDGQLLATSSTKGT 281 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--------~~----~~~~~~~i~~~~~s--------p~~~~l~~~~~dg~ 281 (432)
|++|.+.+++. -.+|.+.+||....-. .. +......|..+.|. |+...|+++..+|.
T Consensus 164 ws~D~~~~Lf~---~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr 240 (1189)
T KOG2041|consen 164 WSEDLEQALFK---KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGR 240 (1189)
T ss_pred ecccHHHHHhh---hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCce
Confidence 99998776544 3679999999876211 11 11122235555553 47788999999998
Q ss_pred eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee
Q 014007 282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG 361 (432)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (432)
+.|-.-.+......+.. .-.+....|+++|..||.++.+.. ....+ ..+...|.+.
T Consensus 241 -~QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~vLAvcG~~~d-----a~~~~---------------d~n~v~Fysp 296 (1189)
T KOG2041|consen 241 -MQIMRSENDPEPVVVDT---GMKIVGAKWNHNGAVLAVCGNDSD-----ADEPT---------------DSNKVHFYSP 296 (1189)
T ss_pred -ehhhhhcCCCCCeEEec---ccEeecceecCCCcEEEEccCccc-----ccCcc---------------ccceEEEecc
Confidence 88765444444444553 257899999999999999986531 11111 0011111111
Q ss_pred cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+ ..-+.+++.+...|++++|-..|-.++.+ .|+.|++=++.|+
T Consensus 297 ~-------G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 297 Y-------GHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred c-------hhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence 0 01145677888889999998777666654 4778887776663
No 256
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.46 E-value=2.1e-11 Score=102.78 Aligned_cols=246 Identities=12% Similarity=0.131 Sum_probs=168.8
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEc-CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
-.+..++|.+.|+....-|...-+.+.+ |.+++||-- +.++. -..+...-...+..+.+..+...|+.+-.+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~--wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n---- 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY--WPSIYHYMPSPCSAMEYVSESRRLYVGQDN---- 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEecccccc--CchhhhhCCCCceEeeeeccceEEEEEEec----
Confidence 3567888999999888877666666666 666999964 33332 233332356788899999999999999888
Q ss_pred CCeEEEEeCCC----CceeEEee-cCCceEEEEEecCccEEEeC--CeEEEEEc-CCCeeeEEEeeccCCcceEEEecCC
Q 014007 155 LNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRDRIIVVLE--QKIFVYNF-ADLKLLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 155 ~~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~~~~~~~d--~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (432)
|++.-+.+.. ....+.+. |...+..+-|+.....+++. ++-..|.. +.+..+..+.... ......+.-.
T Consensus 90 -gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~-~~t~~~~d~~- 166 (404)
T KOG1409|consen 90 -GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET-PASALQFDAL- 166 (404)
T ss_pred -ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec-cCCCCceeeE-
Confidence 9999887643 33444444 89999999999887777752 23334443 3333322221100 0011111111
Q ss_pred CcEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE-EEEeCCC
Q 014007 227 GSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGAD 302 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~-~~~~~~~ 302 (432)
.+..|...|.|.+-.+.. +.+.++.+|.+.+.+++|.+...+|++|..|.. |.+||+.-++-.. ++. .|
T Consensus 167 ----~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~-vi~wdigg~~g~~~el~--gh 239 (404)
T KOG1409|consen 167 ----YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS-VIMWDIGGRKGTAYELQ--GH 239 (404)
T ss_pred ----EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc-eEEEeccCCcceeeeec--cc
Confidence 233455666666655443 567788899999999999999999999999999 9999987554433 333 36
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
...|..+..-+--+.|.+++.||.|.+|+.+..+..
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 678888888888889999999999999999876543
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.46 E-value=3.2e-11 Score=99.59 Aligned_cols=259 Identities=11% Similarity=0.110 Sum_probs=165.3
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeC---CeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEee-c------CC
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F------RS 176 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~------~~ 176 (432)
+.+|++...+......+.......+..|.|.- ++. .++-+... |.|.++..........+. . ..
T Consensus 48 l~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~-----G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 48 LHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHAR-----GQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred eEEEeecccccCccceeeeecccccceeeeeeccCCccceeeecccc-----ceEEEEeeccceeeeeecccchhhhhhe
Confidence 77888766554432222212444555566532 222 44444555 889999765544433333 0 11
Q ss_pred ceEEEEEecCccEEE---eCCeEEEEEcCCCee--eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 177 EVRSVKLRRDRIIVV---LEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 177 ~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
...++.|++.+.-++ ++|.+.+.+...... ++.++.|.-......|+.....+ +.+|+.|+.+..||++....
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnl--vytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNL--VYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCce--EEecCCCceEEEEEecCCcc
Confidence 245677888777666 377787666555443 34778888888888888776654 33677999999999995332
Q ss_pred e---eeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCC--CEEEEEeCC
Q 014007 252 K---FIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDK 324 (432)
Q Consensus 252 ~---~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~d 324 (432)
. ..+.|...|.+|.-+| .+.++++|+.|.. |++||.+ -++++..-. ..+.|+.+.++|.- +.|+++-.+
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~~---v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKAK---VGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccCc---cccceEEEEecchhhhHHHHHHHhc
Confidence 2 2456889999998886 6789999999999 9999998 466665544 44889999999953 344444444
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec-CCe
Q 014007 325 GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM-DGS 403 (432)
Q Consensus 325 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~ 403 (432)
-.+|-+........ .-.+...+.|.+-+..-.|.....+|++++. |..
T Consensus 277 -G~ki~~~~~~~~e~------------------------------~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 277 -GAKILDSSDKVLEF------------------------------QIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred -CceEEEecccccch------------------------------heeeeccccccceeeccccccccceeeeeeccccc
Confidence 47888887764210 0013345667665556666444456887654 666
Q ss_pred EE-EEE
Q 014007 404 FY-RCQ 408 (432)
Q Consensus 404 v~-iw~ 408 (432)
++ +|-
T Consensus 326 ~~~~Wl 331 (339)
T KOG0280|consen 326 IRQLWL 331 (339)
T ss_pred eeeeee
Confidence 44 654
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=5.8e-10 Score=99.06 Aligned_cols=237 Identities=13% Similarity=0.043 Sum_probs=153.5
Q ss_pred EcCCCCEEEEEcC-----------CcEEEEEcCCCeeEEEeecccC----cceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 93 FNQDHGCFAAGTD-----------HGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 93 ~s~~~~~l~~~~~-----------~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
+||||+.|+++.. +.|.+||..+.+......+... ....-..+.+++++..++....+| ...
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---SPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC---CCE
Confidence 9999998776644 3499999999887744443211 122334678899987776544221 189
Q ss_pred EEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCC-Ceee-EEEee-cc--CCcc-eEEEec-CCCcE
Q 014007 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLL-HQIET-IA--NPKG-LCAVSQ-GVGSL 229 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~-~~~~~-~~--~~~~-~~~~~~-~~~~~ 229 (432)
|.+.|+.+++.+.++...+...-...+++..++. .||......+.+ ++.. ..... +. .++. .-.+.+ ++..+
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999999999998655444444544444433 466655544433 2211 11111 01 1110 114456 66555
Q ss_pred EEEeecCCCCcEEEEEccCCcee------eee-------ccCCceeEEEEcCCCCEEEEEcC----------CCceEEEE
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTK------FIM-------AHDSRIACFALTQDGQLLATSST----------KGTLVRIF 286 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~------~~~-------~~~~~i~~~~~sp~~~~l~~~~~----------dg~~i~vw 286 (432)
++. ..|.|.+.|+...... .+. -..+.+.-++++|+++.|++... .+. |.++
T Consensus 210 ~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~-V~Vi 284 (352)
T TIGR02658 210 WPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF-LFVV 284 (352)
T ss_pred EEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE-EEEE
Confidence 443 3499999997553221 111 12344556999999998888431 135 9999
Q ss_pred ECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCCCC
Q 014007 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSAR 340 (432)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 340 (432)
|..+++.+..+..+ ..+..++++||++ +|++.. .++.|.++|+.+++.++.
T Consensus 285 D~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 285 DAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred ECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 99999999999853 5789999999999 777666 678899999999885543
No 259
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.6e-11 Score=110.11 Aligned_cols=213 Identities=16% Similarity=0.207 Sum_probs=143.5
Q ss_pred EEeecCCceEEEEEecCccEEEeC----CeEEEEEcCCCeeeEE----------------------------EeeccC--
Q 014007 170 GELSFRSEVRSVKLRRDRIIVVLE----QKIFVYNFADLKLLHQ----------------------------IETIAN-- 215 (432)
Q Consensus 170 ~~~~~~~~v~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~----------------------------~~~~~~-- 215 (432)
+.|.+....+.|..+|||+|+.+- -.|++||+....+... +..|..
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 345577888999999999999864 4799999876432111 111100
Q ss_pred ---------CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 216 ---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 216 ---------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
.-..++++.-.-.++++. ....|+-+++..++. ..+....+.++++..++...+|++|+.+|. |.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~g---sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~-VEf 201 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVG---SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGV-VEF 201 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEee---cCcceEEEEccccccccccccccccceeeeecCccceEEecccCce-EEE
Confidence 001122222222344443 235677777777553 345556688999999999899999999999 999
Q ss_pred EECCCCceEEEEEeCC----Cc-----CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 286 FNTLDGTLLQEVRRGA----DR-----AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~----~~-----~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
||.++...+..+.... |. ..|+++.|+.+|-.+++|+.+|.+.|||+++.+++.
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----------------- 264 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----------------- 264 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-----------------
Confidence 9999887777665422 12 249999999999999999999999999999987542
Q ss_pred eeEeecccceeecceeeEEEEecC--CCceEEEEccC--CCEEEEEecCCeEEEEEecCCCCCcceEeeeccc
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQ--KNTVVILGMDGSFYRCQFDPVNGGEMTQLEYNNF 425 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~ 425 (432)
.+.|. -+|..+.|-+. ++.|++ .....++||+ ..+|+.+..++...-
T Consensus 265 -------------------~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd--~~~Gk~~asiEpt~~ 315 (703)
T KOG2321|consen 265 -------------------VKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWD--ECTGKPMASIEPTSD 315 (703)
T ss_pred -------------------ecccCCccceeeecccccCCCceEEe-cchHHhhhcc--cccCCceeeccccCC
Confidence 22233 35777888664 334443 3456789976 466777766665443
No 260
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.42 E-value=4.6e-11 Score=116.22 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=170.3
Q ss_pred eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCccEEEe
Q 014007 122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVVL 192 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~ 192 (432)
..+. .|...+..++.++.. .++++|+.| |+|++||...- +...++. ..+.+.++..-+.+..++.
T Consensus 1042 AhL~-Ehs~~v~k~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1042 AHLH-EHSSAVIKLAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ehhh-hccccccceeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 4443 577777788776655 999999999 99999997642 2334444 5788999988888887773
Q ss_pred ---CCeEEEEEcCCC--e-----eeEEEeecc--CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---eeecc
Q 014007 193 ---EQKIFVYNFADL--K-----LLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAH 257 (432)
Q Consensus 193 ---d~~i~i~d~~~~--~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~ 257 (432)
||.|++.++... + +......+. ..+..-++........+++ +...+.|..||++..... .....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy-~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVY-ATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEE-EEeccceEEecchhhhhHHhhhcCcc
Confidence 999999998762 1 111111111 1222333333333322332 347789999999884321 23345
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC---CEEEEEe--CCCeEEEEEe
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA---QWLAVSS--DKGTVHVFNL 332 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~--~dg~i~iwd~ 332 (432)
.+.|++++.+|.+.++++|+..|. +.+||++=+.++.....+ +..++..+..+|-. ...++++ ..+.|.+|++
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~-l~lWDLRF~~~i~sw~~P-~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQ-LVLWDLRFRVPILSWEHP-ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCce-EEEEEeecCceeecccCc-ccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 678999999999999999999999 999999998888887754 44788888877643 3444443 5788999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 333 KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
.++.+...+-.. .....+. ..+|.-.. -+.+.-.....++..-+.++.+|+.|+.|+.||....
T Consensus 1273 ~~g~~~~vl~~s------~~~p~ls---~~~Ps~~~-------~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1273 ETGLRQTVLWAS------DGAPILS---YALPSNDA-------RKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ccCcceEEEEcC------CCCcchh---hhcccccC-------CCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 998643222110 0000000 00110000 0011112233445556778999999999999987554
Q ss_pred C
Q 014007 413 N 413 (432)
Q Consensus 413 ~ 413 (432)
.
T Consensus 1337 ~ 1337 (1431)
T KOG1240|consen 1337 E 1337 (1431)
T ss_pred c
Confidence 3
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.37 E-value=2.9e-09 Score=107.34 Aligned_cols=315 Identities=13% Similarity=0.151 Sum_probs=188.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEE----EcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIY----NCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
....+.|.++.|-++...|+.+..+| |.+. +.+........ .-..+|.+++|+||...++-...+ +
T Consensus 72 ~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG----~vd~GI~a~~WSPD~Ella~vT~~-----~ 142 (928)
T PF04762_consen 72 DDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVG----SVDSGILAASWSPDEELLALVTGE-----G 142 (928)
T ss_pred cCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEE----EEcCcEEEEEECCCcCEEEEEeCC-----C
Confidence 34567999999999998888888666 7777 44433333222 355789999999998766655544 6
Q ss_pred eEEEEeCC---------------C--------CceeEEee-------------------------cCCceEEEEEecCcc
Q 014007 157 KVMIWDDH---------------Q--------SRCIGELS-------------------------FRSEVRSVKLRRDRI 188 (432)
Q Consensus 157 ~v~iwd~~---------------~--------~~~~~~~~-------------------------~~~~v~~~~~~~~~~ 188 (432)
++.+.+-. . |+....|. ....-..++|..||.
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~ 222 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGE 222 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCc
Confidence 77666410 0 11111110 112345688999999
Q ss_pred EEEe-------C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee----
Q 014007 189 IVVL-------E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---- 255 (432)
Q Consensus 189 ~~~~-------d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~---- 255 (432)
+++. + ..++||+ +.|.....-+.-.+--..++|.|.|+.++.+-.-.....|.+|.-++-+...+.
T Consensus 223 yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~ 301 (928)
T PF04762_consen 223 YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFD 301 (928)
T ss_pred EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCC
Confidence 9882 2 4799999 457655544433444457899999985543332223456677775553333332
Q ss_pred ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEe
Q 014007 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~ 332 (432)
.....|..+.|++|+..||....|. |.+|-..+..- .+++... ....+..+.|+|.. ..|...+.+|.+..++.
T Consensus 302 ~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 302 PEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 3456899999999999999977665 99998777542 2333322 22345569999954 45667776677765554
Q ss_pred c----CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 333 K----VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 333 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
. .+...... ....+.+-.+..+.+ ..+.....-...+...+... ..|..++|++++..+++-..||.|.+|.
T Consensus 379 ~~~v~~s~~~~~~--D~g~vaVIDG~~lll-Tpf~~a~VPPPMs~~~l~~~-~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 379 AWDVSRSPGSSPN--DNGTVAVIDGNKLLL-TPFRRAVVPPPMSSYELELP-SPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred EEEEEecCCCCcc--CceEEEEEeCCeEEE-ecccccCCCchHhceEEcCC-CCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 3 22211000 000000111111111 10000000011112233333 5799999999999899999999999999
Q ss_pred ecCCC
Q 014007 409 FDPVN 413 (432)
Q Consensus 409 ~~~~~ 413 (432)
++...
T Consensus 455 ~~~~~ 459 (928)
T PF04762_consen 455 WDLKN 459 (928)
T ss_pred ecCCC
Confidence 87654
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=9.4e-11 Score=105.86 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=150.4
Q ss_pred CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeecc
Q 014007 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA 214 (432)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 214 (432)
+...+++....| |.+++||..+++....+. ..+...+..|. +..+..-.-|- .+..
T Consensus 3 ~~~~~~A~~~~~-----g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~~k~~--------~~~~-- 62 (541)
T KOG4547|consen 3 PALDYFALSTGD-----GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSPMKWL--------SLEK-- 62 (541)
T ss_pred chhheEeecCCC-----CeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccchHHHH--------hHHH--
Confidence 344566777777 999999999998877776 24455555554 22211100000 0000
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee---eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
....+.+ ..+++- |...|.|.+|++..+.+... ..|.+.|.++.++.+-..|.+++.|+. +..|+..++
T Consensus 63 ----~~~~s~~--t~~lvl-gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~-v~~~~~~~~ 134 (541)
T KOG4547|consen 63 ----AKKASLD--TSMLVL-GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLK-VVYILEKEK 134 (541)
T ss_pred ----HhhccCC--ceEEEe-ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCcee-EEEEecccc
Confidence 0011122 223332 55789999999998777543 369999999999999999999999999 999999999
Q ss_pred ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
+.++.++. .+..+.+++.+|||..|++++ +.|++||+++.+.
T Consensus 135 ~~~~~~~~--~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev---------------------------------- 176 (541)
T KOG4547|consen 135 VIIRIWKE--QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV---------------------------------- 176 (541)
T ss_pred eeeeeecc--CCCccceEEEcCCCCEEEecc--ceEEEEEccCceE----------------------------------
Confidence 99998886 347799999999999999885 6899999999873
Q ss_pred eeEEEEecCCCceEEEEccC-----CCEEE-EEecCCeEEEEEecCC
Q 014007 372 SVAQFRLVEGSPYIVAFGHQ-----KNTVV-ILGMDGSFYRCQFDPV 412 (432)
Q Consensus 372 ~~~~~~~~~~~v~~~~~s~~-----~~~l~-~~~~dg~v~iw~~~~~ 412 (432)
+.+|.+|.+.|+++.|..+ |.++. +...+..+.+|..+.+
T Consensus 177 -v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 177 -VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred -EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 5578899999999999887 56555 4555677888988774
No 263
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.35 E-value=4.6e-09 Score=107.94 Aligned_cols=247 Identities=9% Similarity=0.063 Sum_probs=153.8
Q ss_pred EEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec---------------CCceEEEEEecCccEEE-e---C
Q 014007 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF---------------RSEVRSVKLRRDRIIVV-L---E 193 (432)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~-~---d 193 (432)
.+++++ ++.++++...+ +.|++||.. ++.+..+.. -....++++.+++..++ + +
T Consensus 572 gvavd~~~g~lyVaDs~n-----~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNH-----NRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred eEEEECCCCeEEEEECCC-----CeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 456665 45566666666 899999964 554443331 12357899998765433 3 4
Q ss_pred CeEEEEEcCCCeeeEEEeec-----------------cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec
Q 014007 194 QKIFVYNFADLKLLHQIETI-----------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA 256 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~ 256 (432)
+.|+++|+.++. +.++.+. -+.-..+++++++..++++. ..++.|++||...+.+..+.+
T Consensus 646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCeEEEEec
Confidence 679999987754 3333210 01123688999777777654 357899999988765544322
Q ss_pred c---------------CCceeEEEEcCCCCEEE-EEcCCCceEEEEECCCCceEEEEEe-----------CCC-------
Q 014007 257 H---------------DSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEVRR-----------GAD------- 302 (432)
Q Consensus 257 ~---------------~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~~~~~~~~~~-----------~~~------- 302 (432)
. -.....|+++|+|+.|+ +.+.++. |++||+.++.......+ +..
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~-Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS-IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe-EEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1 12356799999998554 5555677 99999987653211100 000
Q ss_pred -cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 303 -RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 303 -~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
-.....++++++|.++++-+.+++|++||..++...... +. ....+.... .....-.
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~-----------------G~~G~~dG~----~~~a~l~ 859 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GT-----------------GKAGFKDGK----ALKAQLS 859 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-cc-----------------CCcCCCCCc----ccccccC
Confidence 013468999999998888889999999999876521100 00 000000000 0111123
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
....++++++|+.+++-+.++.|++|+++..
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 4678999999998888888999999987553
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.3e-09 Score=99.45 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=128.3
Q ss_pred eEEEEeeeCCeEE-Ee-cCC--CCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------CCeEEEEE
Q 014007 131 GVVEMLFRCNILA-LV-GGG--PDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------EQKIFVYN 200 (432)
Q Consensus 131 ~v~~~~~~~~~~~-~~-s~~--~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~~i~i~d 200 (432)
......|+|++.. ++ +.. .. ..|+++|+.+++........+......|+|||..++. +..|+++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~-----~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERK-----PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCC-----CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 6678889999863 33 222 23 6799999988876655556666777889999987762 35799999
Q ss_pred cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-
Q 014007 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK- 279 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d- 279 (432)
+.+++. ..+...........|+|||+.+++.+.......|.+.|+.++....+...... ...|+|||++|+..+..
T Consensus 264 l~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 264 TNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCC
Confidence 877754 33433333234568999999998876332334788888888766554332222 24899999988876643
Q ss_pred --------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-C--eEEEEEecCC
Q 014007 280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-G--TVHVFNLKVN 335 (432)
Q Consensus 280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~iwd~~~~ 335 (432)
.. |.+.|+.++... .+... .......|+|||+.|+..+.+ + .+.+.++...
T Consensus 341 ~~~~~~~~~~-I~v~d~~~g~~~-~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 341 NNEFGKNTFN-LYLISTNSDYIR-RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CcccCCCCcE-EEEEECCCCCeE-ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 25 888998887653 34322 223358999999988766532 2 3666666553
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.31 E-value=1.4e-08 Score=104.44 Aligned_cols=239 Identities=10% Similarity=0.109 Sum_probs=152.0
Q ss_pred EEEEEcCCC-CEEEEEcCCc-EEEEEcCCCeeEEEeecc-c---------CcceeEEEEeeeCCeE-EEecCCCCCCCCC
Q 014007 89 LHISFNQDH-GCFAAGTDHG-FRIYNCDPFREIFRRDFE-R---------GGGIGVVEMLFRCNIL-ALVGGGPDPQYPL 155 (432)
Q Consensus 89 ~~~~~s~~~-~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-~---------~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~ 155 (432)
..+++++++ +++++-..+. |++||.+........... . ..-..-..+++++++. ++++...+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n----- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN----- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----
Confidence 457888764 4555544444 999997644322111100 0 0012246677877654 34444444
Q ss_pred CeEEEEeCCCCceeEEeec------------------CCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeec
Q 014007 156 NKVMIWDDHQSRCIGELSF------------------RSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETI 213 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~------------------~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~ 213 (432)
+.|+++|..++. +.++.. -....++++++ ++.+.++ ++.|++||..++... .+.+.
T Consensus 646 ~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~ 723 (1057)
T PLN02919 646 HALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGD 723 (1057)
T ss_pred ceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecC
Confidence 789999987654 333210 12346799999 4555443 578999998776542 22111
Q ss_pred ---------------cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--------------c-------
Q 014007 214 ---------------ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--------------H------- 257 (432)
Q Consensus 214 ---------------~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--------------~------- 257 (432)
......++++|+++.++++- ..++.|++||+.++....+.+ +
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 01223589999998887764 467899999988754322110 0
Q ss_pred -CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEeCCC
Q 014007 258 -DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 258 -~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
-.....++++++|+++++-..++. |++||..++........+. .-.....++++++|+++++-+.++
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 112468999999998888888888 9999988876654332110 112567899999999888888999
Q ss_pred eEEEEEecCCCC
Q 014007 326 TVHVFNLKVNSG 337 (432)
Q Consensus 326 ~i~iwd~~~~~~ 337 (432)
+|++||+.+++.
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999988764
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.30 E-value=2e-09 Score=95.71 Aligned_cols=236 Identities=9% Similarity=0.107 Sum_probs=159.5
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe--EEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI--LALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
-+.|+-+.+++|--..+.+.|+++ +.... ...+..-....+..+.++|.+ ..++.-.-...-.++.+++|.+..+.
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~-~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEI-TDNIE-EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEec-CCccc-cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 567787777766555566888886 22211 122211134667788888762 22222111111123899999998877
Q ss_pred eeEEee-cCCceEEEEEecCccEEEe--------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 168 CIGELS-FRSEVRSVKLRRDRIIVVL--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 168 ~~~~~~-~~~~v~~~~~~~~~~~~~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.+.+-. ..-.=..+.|.+.|.+++. ...++|++++.... .......++|..++|.|.++.+.++
T Consensus 214 ~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 214 VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCceeEE
Confidence 766655 4444457889998887762 35788999874333 2222557899999999999998776
Q ss_pred eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEE-EEEeCCCcCceEE
Q 014007 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQ-EVRRGADRAEIYS 308 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~-~~~~~~~~~~i~~ 308 (432)
+ |..+..+.++|+++.... ...+..=..+.|+|.+++++.++.| |. |-+||........ .+.+ ....-
T Consensus 293 ~-g~~pa~~s~~~lr~Nl~~--~~Pe~~rNT~~fsp~~r~il~agF~nl~gn-i~i~~~~~rf~~~~~~~~----~n~s~ 364 (561)
T COG5354 293 S-GYMPASVSVFDLRGNLRF--YFPEQKRNTIFFSPHERYILFAGFDNLQGN-IEIFDPAGRFKVAGAFNG----LNTSY 364 (561)
T ss_pred e-cccccceeecccccceEE--ecCCcccccccccCcccEEEEecCCccccc-eEEeccCCceEEEEEeec----CCceE
Confidence 4 778999999999988333 3334445678899999999997765 56 9999976654443 5553 34566
Q ss_pred EEECCCCCEEEEEe------CCCeEEEEEecCCC
Q 014007 309 LAFSSNAQWLAVSS------DKGTVHVFNLKVNS 336 (432)
Q Consensus 309 ~~~s~~~~~l~~~~------~dg~i~iwd~~~~~ 336 (432)
+.|+||++++.+.. .|+.|.|||+....
T Consensus 365 ~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 365 CDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred eeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 78999999988764 47889999997755
No 267
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=5e-09 Score=92.46 Aligned_cols=184 Identities=10% Similarity=0.153 Sum_probs=132.8
Q ss_pred eCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-----c--------CCceEEEE-Eec-CccEEE--eCCeEEEEE
Q 014007 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-----F--------RSEVRSVK-LRR-DRIIVV--LEQKIFVYN 200 (432)
Q Consensus 138 ~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-----~--------~~~v~~~~-~~~-~~~~~~--~d~~i~i~d 200 (432)
+.+|..++-... |.|++||..+.+.. .+. . -.+..-+. |+. +|.+++ +.|...|.+
T Consensus 275 nsDGkrIvFq~~------GdIylydP~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~ 347 (668)
T COG4946 275 NSDGKRIVFQNA------GDIYLYDPETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMR 347 (668)
T ss_pred CCCCcEEEEecC------CcEEEeCCCcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEEC
Confidence 445555444332 78999997765422 221 0 01111111 222 455554 588888888
Q ss_pred cCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC-cEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 201 FADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
...+-.++. .+...|.-..+.-+++..++++ .|| .+-|+|.++++++.+...-+.|.++..+|+|++++.+...
T Consensus 348 ~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt---~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 348 PWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT---NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred CCCCeeEEc--CCCCceEEEEEccCCcceEEec---cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCc
Confidence 766655543 3556677778888888665543 677 8999999999999999999999999999999999999988
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC----eEEEEEecCCC
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNS 336 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~ 336 (432)
.. |.+.|+.+++....-+ ...+-|+.+.|||+++++|-+--+| .|++||+.+++
T Consensus 423 ~e-l~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 423 FE-LWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred eE-EEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 88 9999999997654333 2457899999999999999776554 69999999987
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=2.2e-11 Score=122.39 Aligned_cols=192 Identities=13% Similarity=0.091 Sum_probs=150.4
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE---eCCeEEEEEcCCC
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL 204 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~ 204 (432)
..+..|.-+|...+.++|+.| |.|++|....++.+..+. ....|+.+.|+.+|.... .||.+.+|.+. .
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~d-----gsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQD-----GSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred CceeeecCCCCCceEEecCCC-----ceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence 345566667778888999999 999999999998888887 568899999999887665 38999999986 5
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
++....+.|......+.|-. ..++-+-....++.+.+||..... -..-..|.+.++++++-|.-+.|++|+.+|.
T Consensus 2283 k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~- 2359 (2439)
T KOG1064|consen 2283 KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE- 2359 (2439)
T ss_pred cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc-
Confidence 66666677776666666655 222222223478999999976532 2223789999999999999999999999999
Q ss_pred EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 342 (432)
|++||++..++++.++. +. ...++++|+..|.++||++.....++.++
T Consensus 2360 v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99999999988877762 33 55789999999999999999887665554
No 269
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=7.5e-10 Score=100.15 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=135.2
Q ss_pred CCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEee------eC--------------CeEEEecCCCCCCC
Q 014007 95 QDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF------RC--------------NILALVGGGPDPQY 153 (432)
Q Consensus 95 ~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~------~~--------------~~~~~~s~~~d~~~ 153 (432)
|-+.++|....+| ++||+...++......-...-....++..| +| +...++-|...
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~--- 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ--- 79 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC---
Confidence 4456888887555 999999877654221110011222222222 22 34455656655
Q ss_pred CCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 154 PLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
|.|.+|++..|+....+. |.+.|.++.++.+-..+.+ |..+..|+....+.+..+......+..++++||+.
T Consensus 80 --g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 80 --GSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred --ccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 999999999999888887 8999999999988777774 78999999999999999988888889999999987
Q ss_pred cEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC-----CCEEEEEc-CCCceEEEEECC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD-----GQLLATSS-TKGTLVRIFNTL 289 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~-----~~~l~~~~-~dg~~i~vwd~~ 289 (432)
.+++++ +.|++||+.+++ +..+.+|.++|.++.|--+ |.+++++. .+.. |.+|-+.
T Consensus 158 ~l~~as-----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~-i~~w~v~ 220 (541)
T KOG4547|consen 158 ILLTAS-----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG-ITVWVVE 220 (541)
T ss_pred EEEecc-----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc-eeEEEEE
Confidence 655433 899999999965 5678999999999999876 66666544 3444 7777554
No 270
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=2.3e-10 Score=96.62 Aligned_cols=257 Identities=11% Similarity=0.142 Sum_probs=157.2
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-----eeEEee-c------------CCceEEEEEecCccE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-F------------RSEVRSVKLRRDRII 189 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----~~~~~~-~------------~~~v~~~~~~~~~~~ 189 (432)
...-+.++.|...|..|++|+.+ |.|.++.-.... ....++ | ...|..+.|.+++..
T Consensus 24 eadiis~vef~~~Ge~LatGdkg-----GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKG-----GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccceEeecCCC-----CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 44556788899999999999999 999999643221 112221 2 356889999887643
Q ss_pred ---EEe--CCeEEEEEcCCCeeeE--------------------EE----------------eeccCCcceEEEecCCCc
Q 014007 190 ---VVL--EQKIFVYNFADLKLLH--------------------QI----------------ETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 190 ---~~~--d~~i~i~d~~~~~~~~--------------------~~----------------~~~~~~~~~~~~~~~~~~ 228 (432)
+++ |.+|++|.+....... .+ ..|.-.++++.++.|.+.
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 332 8899999876421100 00 112333456677777665
Q ss_pred EEEEeecCCCCcEEEEEccC--Cc--eeeeec-----cCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCce-----
Q 014007 229 LVLVCPGLQKGQVRVEHYAS--KR--TKFIMA-----HDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL----- 293 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~-----~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~----- 293 (432)
++ . ..|=.|.+|++.- +. +.-++. -..-|++..|+|. -+.++-.+..|+ |++-|++...+
T Consensus 179 ~l-S---ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 179 FL-S---ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHS 253 (433)
T ss_pred Ee-e---ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchh
Confidence 43 2 2688999999875 21 122222 2346899999994 567888888999 99999984311
Q ss_pred -EEEEEe-CC-------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 294 -LQEVRR-GA-------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 294 -~~~~~~-~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
+..... +. --..|..+.|+++|+|+++-. --+|++||+.. .+++...+-|. +++..+
T Consensus 254 KlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~------------~lr~kL 320 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHE------------YLRSKL 320 (433)
T ss_pred hhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehH------------hHHHHH
Confidence 111110 00 014688999999999998864 36899999954 33332221110 000000
Q ss_pred cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCC
Q 014007 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGG 415 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~ 415 (432)
-......--+ .-..++|+.++..+++|+....+++|+++....+
T Consensus 321 c~lYEnD~If--------dKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 321 CSLYENDAIF--------DKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred HHHhhccchh--------heeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 0000000000 1235889999999999999999999987664433
No 271
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.25 E-value=7.7e-08 Score=83.43 Aligned_cols=220 Identities=15% Similarity=0.090 Sum_probs=143.4
Q ss_pred EEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEe-cCccEEEe-CCeEEEEEcCCCeeeEEE
Q 014007 134 EMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLR-RDRIIVVL-EQKIFVYNFADLKLLHQI 210 (432)
Q Consensus 134 ~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~-d~~i~i~d~~~~~~~~~~ 210 (432)
...|.+ ++.++++.-.. +.|+.|+..+++. ..+.... ..++++. +++.+++. .+.+.++|+.+++.....
T Consensus 4 gp~~d~~~g~l~~~D~~~-----~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG-----GRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTT-----TEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEE
T ss_pred ceEEECCCCEEEEEEcCC-----CEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEe
Confidence 456776 66666666555 8999999877654 3344333 7777887 78877774 667788899888655444
Q ss_pred ee-----ccCCcceEEEecCCCcEEEEeecCCC------CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE-EEcC
Q 014007 211 ET-----IANPKGLCAVSQGVGSLVLVCPGLQK------GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TSST 278 (432)
Q Consensus 211 ~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~ 278 (432)
.. .....+.+++.++|+ +++...+... |.|..++.. +....+...-...+.|+|+|+++.|+ +-+.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc
Confidence 43 123345688999987 5555433211 567777777 55555555556678999999999776 4556
Q ss_pred CCceEEEEECCCCc--e--EEEE-EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 279 KGTLVRIFNTLDGT--L--LQEV-RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 279 dg~~i~vwd~~~~~--~--~~~~-~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
.+. |..+++.... . ...+ ......+..-.+++..+|++.++....+.|.++|.+ ++.
T Consensus 155 ~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~---------------- 216 (246)
T PF08450_consen 155 NGR-IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL---------------- 216 (246)
T ss_dssp TTE-EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE----------------
T ss_pred cce-eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE----------------
Confidence 666 8988885322 1 1222 211111247889999999988887789999999987 552
Q ss_pred CCceeEeecccceeecceeeEEEEecCCCceEEEEc-cCCCEEEEEe
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILG 399 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~ 399 (432)
+..+..+...++.++|. ++.+.|++.+
T Consensus 217 -------------------~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 217 -------------------LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -------------------EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred -------------------EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 33455555578999994 6767776554
No 272
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=1.8e-08 Score=93.46 Aligned_cols=265 Identities=15% Similarity=0.173 Sum_probs=156.3
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
+..+.+++ ++.|..+|..+++......+..... ...... ++..++ ++.+ +.++.+|..+|+.+......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~---~~p~v~-~~~v~v-~~~~-----g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLS---GGVGAD-GGLVFV-GTEK-----GEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcc---cceEEc-CCEEEE-EcCC-----CEEEEEECCCCcEeeeeccC
Confidence 44566665 4559999988888876666542111 112222 333333 3445 89999999999998877754
Q ss_pred CceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCc-----ceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007 176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 248 (432)
..+.+.....++.+++ .++.|+.||.++|+.+..+....... ....+. + +.+++ +..++.+..+|..+
T Consensus 135 ~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~---~~~~g~v~ald~~t 209 (377)
T TIGR03300 135 SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLV---GFAGGKLVALDLQT 209 (377)
T ss_pred ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEE---ECCCCEEEEEEccC
Confidence 4444322223455554 38899999999998877765432211 111111 2 33332 34678999999887
Q ss_pred Cceeeeecc--CC------ceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007 249 KRTKFIMAH--DS------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (432)
Q Consensus 249 ~~~~~~~~~--~~------~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 318 (432)
+...-.... .. .+..+.-+| .+..+++++.+|. ++.||..+++.+...... ....+. .++..+
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~-l~a~d~~tG~~~W~~~~~----~~~~p~--~~~~~v 282 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGR-VAALDLRSGRVLWKRDAS----SYQGPA--VDDNRL 282 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCE-EEEEECCCCcEEEeeccC----CccCce--EeCCEE
Confidence 654321110 00 000111111 3457788888999 999999999887666521 112222 245678
Q ss_pred EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE
Q 014007 319 AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL 398 (432)
Q Consensus 319 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 398 (432)
+.++.+|.|+.+|..+++.+.. ...+. ......... .+..|+++
T Consensus 283 yv~~~~G~l~~~d~~tG~~~W~--------------------------------~~~~~--~~~~ssp~i--~g~~l~~~ 326 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSELWK--------------------------------NDELK--YRQLTAPAV--VGGYLVVG 326 (377)
T ss_pred EEECCCCeEEEEECCCCcEEEc--------------------------------ccccc--CCccccCEE--ECCEEEEE
Confidence 8888999999999998873211 10010 011111121 46788999
Q ss_pred ecCCeEEEEEecCCCCCcceEee
Q 014007 399 GMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 399 ~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
+.+|.|++++ ..+|+.+.+.+
T Consensus 327 ~~~G~l~~~d--~~tG~~~~~~~ 347 (377)
T TIGR03300 327 DFEGYLHWLS--REDGSFVARLK 347 (377)
T ss_pred eCCCEEEEEE--CCCCCEEEEEE
Confidence 9999999865 56677666554
No 273
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=3.5e-09 Score=95.11 Aligned_cols=237 Identities=11% Similarity=0.165 Sum_probs=166.2
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~ 169 (432)
-..||-|++++|.-..++|.||+.......-.+.+ .-..|..+.|+|.+..||--.......+..+.+..+.+++.+
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeeccccc---CCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 36899999999999889999999876555443444 556788899999988888655443344577888888888887
Q ss_pred EEee-cCCceEEEEEecCccEEEe--C--------C---eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 170 GELS-FRSEVRSVKLRRDRIIVVL--E--------Q---KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 170 ~~~~-~~~~v~~~~~~~~~~~~~~--d--------~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
++.. +.-.=..+.|-.+|.+++. | | .+.|+.++........-.....+-.++|.|.|+.+.++.+.
T Consensus 387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~ 466 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGN 466 (698)
T ss_pred eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcc
Confidence 7766 4444455778888998883 1 1 35566665543322222345567789999999999888766
Q ss_pred CCCCcEEEEEccCC--c---eeeeeccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 236 LQKGQVRVEHYASK--R---TKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 236 ~~d~~i~i~d~~~~--~---~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
....++.+|.+.+. . +..+. ....+.+.|+|.|++++.+. ..|. +.++|+.-..+..+-.. .| ...+
T Consensus 467 ~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k~~~~~-eh-~~at 541 (698)
T KOG2314|consen 467 TVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLKDTASP-EH-FAAT 541 (698)
T ss_pred ccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhhhccCc-cc-cccc
Confidence 66788999988741 1 22222 25567899999999988764 4677 99999864232222111 13 4578
Q ss_pred EEEECCCCCEEEEEeC------CCeEEEEEecC
Q 014007 308 SLAFSSNAQWLAVSSD------KGTVHVFNLKV 334 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~------dg~i~iwd~~~ 334 (432)
.+.|.|.|+|+.+++. |.--+||+.+.
T Consensus 542 ~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 542 EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 8999999999999874 45577888765
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.22 E-value=1.4e-09 Score=92.00 Aligned_cols=199 Identities=12% Similarity=0.192 Sum_probs=139.6
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
.+...-+.+++++.+.++.+.|.+|-+++ +.-+.+.. .+....+... .|...+..+.|+-....+++.+.|
T Consensus 62 sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~d----- 135 (404)
T KOG1409|consen 62 SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKD----- 135 (404)
T ss_pred hhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCceeEEEeccc-----
Confidence 34445578999999999999999999777 77776532 2222223333 688999999999888899999887
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEc--CCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNF--ADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
..+.---.+.+..+..+.......++.+.-. +... .|.|.+..+ ..-.++..+.+|.+.+.+.+|.+....++
T Consensus 136 k~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~Lf 213 (404)
T KOG1409|consen 136 KQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLF 213 (404)
T ss_pred cceEEEeeccCCcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEE
Confidence 5544333445555544443333333333222 2221 344444433 34566788889999998899888765443
Q ss_pred EEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 231 LVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
+|..|..+.+||+.. +....+.+|...|..+..-+--+.|.+++.||. |.+||+.
T Consensus 214 ---Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~-i~~w~mn 270 (404)
T KOG1409|consen 214 ---SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGG-IVVWNMN 270 (404)
T ss_pred ---eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCe-EEEEecc
Confidence 466899999999987 445667899999999998888889999999999 9999983
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.22 E-value=1.6e-08 Score=89.37 Aligned_cols=173 Identities=14% Similarity=0.017 Sum_probs=124.1
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC-eEEEEeCCCCceeEEeec
Q 014007 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN-KVMIWDDHQSRCIGELSF 174 (432)
Q Consensus 96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~-~v~iwd~~~~~~~~~~~~ 174 (432)
+|.+++..+.+..-|.+...+-. ..+ ++...|.-..+..+...++.|..| | .+-|+|..+++..+....
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~---iqv--~~~~~VrY~r~~~~~e~~vigt~d-----gD~l~iyd~~~~e~kr~e~~ 400 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYS---IQV--GKKGGVRYRRIQVDPEGDVIGTND-----GDKLGIYDKDGGEVKRIEKD 400 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCee---EEc--CCCCceEEEEEccCCcceEEeccC-----CceEEEEecCCceEEEeeCC
Confidence 67888888887766655432221 223 355556666666555566666666 6 899999888776655557
Q ss_pred CCceEEEEEecCccEEE-eC--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee-cCCCCcEEEEEccCCc
Q 014007 175 RSEVRSVKLRRDRIIVV-LE--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR 250 (432)
Q Consensus 175 ~~~v~~~~~~~~~~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~ 250 (432)
-+.|.++..+++|++++ ++ ..|.++|+.+++....=+...+-+..+.|+|+++.++.+.. |.....|+++|+.+++
T Consensus 401 lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 89999999999999777 43 36777789888765443445567788999999987766542 3345789999999988
Q ss_pred eeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007 251 TKFIMAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
+.......+.=.+-+|.|++++|.--+.
T Consensus 481 iy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 481 IYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EEEecCCcccccCcccCCCCcEEEEEec
Confidence 8776666666667889999998876554
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1.1e-10 Score=107.86 Aligned_cols=290 Identities=11% Similarity=0.097 Sum_probs=192.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC---eEEEecCCCCCCCCCCeEEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~v~i 160 (432)
-...+..+..+|.|+-+|.++..++.+.|++..-... +-+..-..-.+....|++. -..+++.+. ..-.+
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts~------qkaii 95 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTSN------QKAII 95 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCc-eeeeccCcchhcceecccCCCCceeEEecCc------chhhh
Confidence 4567888999999999999999998888885322111 1111012233444445442 344555544 56778
Q ss_pred EeCCCC--ceeEEee--cCCceEEEEEecCccEEE----eCCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 161 WDDHQS--RCIGELS--FRSEVRSVKLRRDRIIVV----LEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 161 wd~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
|++... +.+.-+. |...|+++.|+++..-+. .|..+..||++.. .++..+.........+.|+.....++
T Consensus 96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vl- 174 (1081)
T KOG0309|consen 96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVL- 174 (1081)
T ss_pred hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchh-
Confidence 987643 2333332 888999999999765544 3889999999874 44555555556667789988766654
Q ss_pred EeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCce--EEEEEeCCCcCce
Q 014007 232 VCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTL--LQEVRRGADRAEI 306 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~~~~~~~~i 306 (432)
+. +....|.+||++. ..+..+++|...|+.++|.. ....+.+++.|++ |++||...... .+.+. ...+|
T Consensus 175 as--shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~vt---t~~pi 248 (1081)
T KOG0309|consen 175 AS--SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTVT---TNFPI 248 (1081)
T ss_pred hh--ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceecc---ccCcc
Confidence 33 3668899999987 45667888999999999875 3346789999999 99999865432 22333 34678
Q ss_pred EEEEECCCCCEEEEE--eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 307 YSLAFSSNAQWLAVS--SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
+.-.+-|-|.-.+.- -.++.+.+++.++..... ..+.....+.++.+|.+.|.
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~-------------------------n~~~~~~pVh~F~GH~D~V~ 303 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEW-------------------------NVFDLNTPVHTFVGHDDVVL 303 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhh-------------------------ccccCCcceeeecCcchHHH
Confidence 888888865533322 123466666665543211 11222334778999998887
Q ss_pred EEEEccCCC----------EEEEEecCCeEEEEEecCC
Q 014007 385 IVAFGHQKN----------TVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 385 ~~~~s~~~~----------~l~~~~~dg~v~iw~~~~~ 412 (432)
..-|-..+. .|++-+.|..+++|.++.+
T Consensus 304 eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 304 EFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 766654222 5999999999999998763
No 277
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=4.3e-08 Score=90.89 Aligned_cols=217 Identities=18% Similarity=0.165 Sum_probs=129.9
Q ss_pred CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee
Q 014007 96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173 (432)
Q Consensus 96 ~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~ 173 (432)
++..+++++ ++.+..+|.++++......+. . .+.. .... ++..++. ..+ +.|+.||.++|+.+.++.
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~--~~~~~p~v~-~~~v~v~-~~~-----g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--S--EVLSPPLVA-NGLVVVR-TND-----GRLTALDAATGERLWTYS 172 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--c--eeecCCEEE-CCEEEEE-CCC-----CeEEEEEcCCCceeeEEc
Confidence 345566665 555999998888877655443 1 1211 1222 3344443 334 899999999999888876
Q ss_pred cCCceEE------EEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccC----C------c-ceEEEecCCCcEEEEee
Q 014007 174 FRSEVRS------VKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIAN----P------K-GLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 174 ~~~~v~~------~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~----~------~-~~~~~~~~~~~~~~~~~ 234 (432)
...+... .... ++.+++ .++.+..+|.++|+.+........ . + ....+ .++.+++.
T Consensus 173 ~~~~~~~~~~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~-- 247 (377)
T TIGR03300 173 RVTPALTLRGSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAV-- 247 (377)
T ss_pred cCCCceeecCCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEE--
Confidence 4332211 1222 344444 368999999999887654432110 0 0 01111 23444443
Q ss_pred cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
+.+|.+..+|..+++..-...... ..... ..+..+++++.+|. |..+|..+++.+....... .....+... .
T Consensus 248 -~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~-l~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~ 319 (377)
T TIGR03300 248 -SYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGV-VVALDRRSGSELWKNDELK-YRQLTAPAV--V 319 (377)
T ss_pred -EcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCe-EEEEECCCCcEEEcccccc-CCccccCEE--E
Confidence 267999999998865433222211 11222 24667888889999 9999999998876653211 112222222 4
Q ss_pred CCEEEEEeCCCeEEEEEecCCC
Q 014007 315 AQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+..|++++.+|.|+++|..+++
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCC
Confidence 5688899999999999999887
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=1.1e-07 Score=96.13 Aligned_cols=283 Identities=13% Similarity=0.160 Sum_probs=167.6
Q ss_pred CCCeEEEEEcCCCCEEE--EEcCCc---EEEEEcCCCe-eEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007 85 PPTLLHISFNQDHGCFA--AGTDHG---FRIYNCDPFR-EIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~--~~~~~~---i~iw~~~~~~-~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
...+...+|.+....+. .+.... |.+....... ......+. ......|.++.|-++...++.+..+
T Consensus 21 ~~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~---- 96 (928)
T PF04762_consen 21 DLPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALAS---- 96 (928)
T ss_pred ccccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECC----
Confidence 34667778877665433 332222 3443332221 11112221 1355789999998876555555444
Q ss_pred CCeEEEE----eCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee--------------------
Q 014007 155 LNKVMIW----DDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL-------------------- 207 (432)
Q Consensus 155 ~~~v~iw----d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~-------------------- 207 (432)
|.|.+. +..+......=.....|.+++||||+.+++. ++++.+.+- +..++
T Consensus 97 -Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGW 174 (928)
T PF04762_consen 97 -GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGW 174 (928)
T ss_pred -ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeecc
Confidence 889888 5444432222226889999999999988873 566666541 21111
Q ss_pred ----EEEee------------------------ccCCcceEEEecCCCcEEEEeecCC---CCcEEEEEccCCceeeeec
Q 014007 208 ----HQIET------------------------IANPKGLCAVSQGVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMA 256 (432)
Q Consensus 208 ----~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~ 256 (432)
..|++ ..+.-..++|..||.++++.+.... -..++||+-++....+-..
T Consensus 175 GkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~ 254 (928)
T PF04762_consen 175 GKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEP 254 (928)
T ss_pred CcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEecccc
Confidence 11110 0111224566666665554433112 3688999876432222233
Q ss_pred cCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCceEEEEEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 257 HDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
-.+--.+++|.|.|+++|+... ... |.+|. ++|-.-..|... .....|..+.|++|+..||....|. |.+|-
T Consensus 255 v~gLe~~l~WrPsG~lIA~~q~~~~~~~-VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt 331 (928)
T PF04762_consen 255 VDGLEGALSWRPSGNLIASSQRLPDRHD-VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT 331 (928)
T ss_pred CCCccCCccCCCCCCEEEEEEEcCCCcE-EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence 3344467899999999988765 234 88887 677655555543 2346799999999999999987665 99999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEcc-CCCEEEEEecCCeEEEEEe
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGH-QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~ 409 (432)
..+.. .|..+ .+.... ..+..+.|+| +...|...+.+|.+..+++
T Consensus 332 ~~NYH----------------------------WYLKq-----ei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 332 RSNYH----------------------------WYLKQ-----EIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred eeCCE----------------------------EEEEE-----EEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 98875 11111 122222 2345599999 5566888888787766554
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.16 E-value=4.9e-09 Score=86.93 Aligned_cols=176 Identities=11% Similarity=0.110 Sum_probs=119.1
Q ss_pred CeEEEEeCCCCceeE--Eee--cCCceEEEEEec---CccEEE----eCCeEEEEEcCCCeeeEEEeeccC------Ccc
Q 014007 156 NKVMIWDDHQSRCIG--ELS--FRSEVRSVKLRR---DRIIVV----LEQKIFVYNFADLKLLHQIETIAN------PKG 218 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~--~~~--~~~~v~~~~~~~---~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~------~~~ 218 (432)
|.+.+|++...+.+. ++. ....+..+.|.. ++.+.. +.|.|.++..........+++... ..-
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 778888877665433 222 455667777763 344222 478888887655443333332211 122
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccC---CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECC-CCce
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTL-DGTL 293 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~-~~~~ 293 (432)
++.|++.+..+++ +..+|.+.+.+... ..++.++.|+-.+.-..|+. +.+++.+|+.|+. +..||++ .++.
T Consensus 126 slD~~~~~~~i~v---s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~-l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 126 SLDISTSGTKIFV---SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS-LSCWDIRIPKTF 201 (339)
T ss_pred EEEeeccCceEEE---EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCce-EEEEEecCCcce
Confidence 4567777776543 34678888655544 34456889999999999976 4578999999999 9999999 3444
Q ss_pred EEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCC
Q 014007 294 LQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 294 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+..-. ..|...|.+|.-+| .+.+|++|+.|..|++||.++..
T Consensus 202 i~~n~-kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~ 244 (339)
T KOG0280|consen 202 IWHNS-KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG 244 (339)
T ss_pred eeecc-eeeecceEEEecCCCCCceEEEeccccceeeeehhccc
Confidence 43311 13668899998876 57799999999999999999644
No 280
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=1.3e-09 Score=104.86 Aligned_cols=173 Identities=13% Similarity=0.159 Sum_probs=136.8
Q ss_pred CeEEEEeCCCCceeEEeecCCceE-----EEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVR-----SVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
+.+.+||...+.....+.+..... -+.++++..++++ -+.|.+|+....+....+.+|.+.+..+.++-+|.
T Consensus 109 ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~ 188 (967)
T KOG0974|consen 109 NSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGR 188 (967)
T ss_pred ceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCc
Confidence 789999988877777666544322 2234556666663 68999999874444446788999999999999998
Q ss_pred cEEEEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
+++.++ +|..+++|++++.+.. ...+|...|..+.|+|+ ++++++.|.+ .++|+. +++.+.++..| ....
T Consensus 189 ~i~s~S---dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedct-crvW~~-~~~~l~~y~~h-~g~~ 260 (967)
T KOG0974|consen 189 YIASVS---DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCT-CRVWGV-NGTQLEVYDEH-SGKG 260 (967)
T ss_pred EEEEEe---cCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceE-EEEEec-ccceehhhhhh-hhcc
Confidence 766543 8999999999985543 56789999999999998 8999999999 999974 56666677765 3467
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|..++..++...+++++.|+.+++||+....
T Consensus 261 iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 261 IWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9999999999999999999999999987644
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=1.9e-10 Score=103.03 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=175.8
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCccEEEe-
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDRIIVVL- 192 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~~~~~~- 192 (432)
..+. +|...|..+.--.+...+++++.| ++|++|.++.. .+..++. |+.+|.++.|-.+.+++++
T Consensus 729 ~nf~-GH~~~iRai~AidNENSFiSASkD-----KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 729 CNFT-GHQEKIRAIAAIDNENSFISASKD-----KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eccc-CcHHHhHHHHhcccccceeeccCC-----ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 4454 788888888877788889999999 99999998642 2555666 9999999999999998885
Q ss_pred CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecC-CCcEEEEeecCCCCcEEEEEccCCce-eee-----eccCCceeE
Q 014007 193 EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQG-VGSLVLVCPGLQKGQVRVEHYASKRT-KFI-----MAHDSRIAC 263 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~-----~~~~~~i~~ 263 (432)
||.|++||.--++++..+.. ..+.+..+..-++ .+.++++ +.+...+|+++|.+.... ..+ .+.+.-+.+
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliA-gcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIA-GCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheee-eccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 99999999877777654422 1223333443344 4444443 335788999999988332 122 344567899
Q ss_pred EEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE-EEecCCCCCCCCC
Q 014007 264 FALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV-FNLKVNSGSARSE 342 (432)
Q Consensus 264 ~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~ 342 (432)
++..+.|+.|+++-.+|. |.+.|.++|+.+...+. .+.....++ .|..+.|+....|.++.+ |....+.......
T Consensus 882 iaVa~~GN~lAa~LSnGc-i~~LDaR~G~vINswrp--mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGC-IAILDARNGKVINSWRP--MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred EEeccCcchhhHHhcCCc-EEEEecCCCceeccCCc--ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccC
Confidence 999999999999999999 99999999998877663 223333343 255667777777888888 8766554221111
Q ss_pred --CCCCCCCCCCCCCceeEe--ecccceeecc-----eeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007 343 --PRSTSDPTLPTSSLSFIK--GVLPKYFSSE-----WSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYR 406 (432)
Q Consensus 343 --~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~i 406 (432)
..+.-+...-+.++.+.. ..+..|.... ..+..++. -.+..++++--|-+.-+..|+..|.|.+
T Consensus 958 pppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 958 PPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 111111122222222221 0111111110 00111111 2256777888887777777888888875
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.13 E-value=4.7e-07 Score=78.53 Aligned_cols=212 Identities=15% Similarity=0.107 Sum_probs=141.7
Q ss_pred EEEEcC-CCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeee-CCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 90 HISFNQ-DHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR-CNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 90 ~~~~s~-~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
++.|.+ ++.++.+...++ |..|+..+..... ..+. . ...+.+. +++.++++.. +.+.++|..++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTG 70 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--S---EEEEEEECTTSEEEEEET-------TCEEEEETTTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--C---CceEEEEccCCEEEEEEc-------CceEEEecCCC
Confidence 578998 666666665455 8889987765542 2222 1 6666776 7777777765 55677798888
Q ss_pred ceeEEee------cCCceEEEEEecCccEEEeC-----------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 167 RCIGELS------FRSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 167 ~~~~~~~------~~~~v~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
+...... .....+.+++.++|.+.+++ |.|..++.. ++...... .-...+.++|+|+++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEE
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchhe
Confidence 6544333 23457889999999877641 567888876 55443333 34445689999999988
Q ss_pred EEEeecCCCCcEEEEEccCCc--e---eeee-cc--CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007 230 VLVCPGLQKGQVRVEHYASKR--T---KFIM-AH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~--~---~~~~-~~--~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~ 301 (432)
+++- +..+.|..++++... + ..+. .. .+....+++..+|++.++....+. |.++|.. |+.+..+....
T Consensus 149 yv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~ 224 (246)
T PF08450_consen 149 YVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPV 224 (246)
T ss_dssp EEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SS
T ss_pred eecc--cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCC
Confidence 7654 467889999986422 1 2221 12 234788999999998887777788 9999965 99999888652
Q ss_pred CcCceEEEEE-CCCCCEEEEEe
Q 014007 302 DRAEIYSLAF-SSNAQWLAVSS 322 (432)
Q Consensus 302 ~~~~i~~~~~-s~~~~~l~~~~ 322 (432)
..+++++| .++.+.|...+
T Consensus 225 --~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 225 --PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SSEEEEEEESTTSSEEEEEE
T ss_pred --CCEEEEEEECCCCCEEEEEe
Confidence 58999999 46766665543
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.11 E-value=2.2e-09 Score=92.80 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=112.3
Q ss_pred EEEEEecCccEEEe---CCeEEEEEcCCC----eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 179 RSVKLRRDRIIVVL---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 179 ~~~~~~~~~~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
..+..++++++++. +....+++.... +.+....... .-+.+.+.-+.....++-..+....+.+|.....+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~-~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK-RPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc-CcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 33445566666662 334445554432 2222222222 223455555555555554334566666776666777
Q ss_pred eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 252 KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
..+.+|-+.++.++|+||+++++++..|.. ||+-.....-.+..|-.+ |+..|..++.-++ +.|++++.|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 778899999999999999999999999999 999887777677777654 8889999999754 5689999999999999
Q ss_pred ecCCCCCCCCC
Q 014007 332 LKVNSGSARSE 342 (432)
Q Consensus 332 ~~~~~~~~~~~ 342 (432)
+.+++++...+
T Consensus 222 ~~sgk~L~t~d 232 (390)
T KOG3914|consen 222 ITSGKLLDTCD 232 (390)
T ss_pred cccCCcccccc
Confidence 99999886654
No 284
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=8.7e-09 Score=86.17 Aligned_cols=240 Identities=11% Similarity=0.218 Sum_probs=154.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCe-e--EEEeecccCc------------ceeEEEEeeeCC---eEE
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFR-E--IFRRDFERGG------------GIGVVEMLFRCN---ILA 143 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~-~--~~~~~~~~~~------------~~~v~~~~~~~~---~~~ 143 (432)
...+.|+++.|...|.||++|..+| |.+|.-+... + .+...++ +| ...|..+.|..+ ..+
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 3467899999999999999999777 8888754332 1 1112232 22 234556665432 234
Q ss_pred EecCCCCCCCCCCeEEEEeCCCCc------------------------------------------eeEEee--cCCceE
Q 014007 144 LVGGGPDPQYPLNKVMIWDDHQSR------------------------------------------CIGELS--FRSEVR 179 (432)
Q Consensus 144 ~~s~~~d~~~~~~~v~iwd~~~~~------------------------------------------~~~~~~--~~~~v~ 179 (432)
++++ .| .+|++|.+.... +.+.+. |.-.|.
T Consensus 103 Llst-Nd-----ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiN 176 (460)
T COG5170 103 LLST-ND-----KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHIN 176 (460)
T ss_pred EEec-CC-----ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEee
Confidence 4444 44 899999764320 001111 555688
Q ss_pred EEEEecCccEEEe--CCeEEEEEcCCCee---eEEEeec-----cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007 180 SVKLRRDRIIVVL--EQKIFVYNFADLKL---LHQIETI-----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (432)
Q Consensus 180 ~~~~~~~~~~~~~--d~~i~i~d~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 249 (432)
++.++.|...+.+ |=.|.+|++.-... +..++.+ ...+++..|+|....++.-+ +..|.|++-|++..
T Consensus 177 SiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS--sSkG~Ikl~DlRq~ 254 (460)
T COG5170 177 SISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS--SSKGEIKLNDLRQS 254 (460)
T ss_pred eeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe--cCCCcEEehhhhhh
Confidence 8899888777664 44788998764221 2222222 23466788999877766544 46899999999852
Q ss_pred ce-----ee------------eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCC----------
Q 014007 250 RT-----KF------------IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGA---------- 301 (432)
Q Consensus 250 ~~-----~~------------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~---------- 301 (432)
.+ .. +.+-...|..+.|+++|+++++-+.. + |++||.+.. .++.++..+.
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHHHHhhh
Confidence 21 11 12234578899999999999887665 4 999998754 5666664321
Q ss_pred CcCc---eEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 302 DRAE---IYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 302 ~~~~---i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
.... -..+.||.|.+.+++|+..+..-+|-+.
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 0112 3468899999999999988888888644
No 285
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=5.4e-07 Score=77.51 Aligned_cols=232 Identities=18% Similarity=0.178 Sum_probs=150.9
Q ss_pred CCeEEEEEcC-CCCEEEEEcCCc--EEEEEcCCCeeEEEeecccCcceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 86 PTLLHISFNQ-DHGCFAAGTDHG--FRIYNCDPFREIFRRDFERGGGIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 86 ~~v~~~~~s~-~~~~l~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
.....++.+| ....++.+-.-+ ..+||..+++......-. ..... -.-.|++++..|.+...|-.-..|.|-||
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 3455688899 455667776444 889999888766332221 22212 23568999999998877644455899999
Q ss_pred eCC-CCceeEEee-cCCceEEEEEecCccEEE-e--------------------CCeEEEEEcCCCeeeEEEee----cc
Q 014007 162 DDH-QSRCIGELS-FRSEVRSVKLRRDRIIVV-L--------------------EQKIFVYNFADLKLLHQIET----IA 214 (432)
Q Consensus 162 d~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~--------------------d~~i~i~d~~~~~~~~~~~~----~~ 214 (432)
|.. +.+.+.++. +.-....+.+.||+..++ . +..+...|..+|+.+..... +.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 998 557778887 666677888999994444 2 12466677778887776433 55
Q ss_pred CCcceEEEecCCCcEEEEee--cC---CCCcEEEEEccCCceeee-------eccCCceeEEEEcCCCCEEEEEcCCCce
Q 014007 215 NPKGLCAVSQGVGSLVLVCP--GL---QKGQVRVEHYASKRTKFI-------MAHDSRIACFALTQDGQLLATSSTKGTL 282 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~--g~---~d~~i~i~d~~~~~~~~~-------~~~~~~i~~~~~sp~~~~l~~~~~dg~~ 282 (432)
..++.+++..+|.-. ++.- |. .-..|-+++.... +..+ ..-...+-+|++++++.++++.+-.|..
T Consensus 163 lSiRHLa~~~~G~V~-~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVA-FAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cceeeEEecCCCcEE-EEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 678888888887422 2220 00 0122333332221 2211 2345789999999999988777766655
Q ss_pred EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
+.+||..+++.+..... ..+..++-.+++ ++++.+ .|.+
T Consensus 241 ~~~~d~~tg~~~~~~~l----~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 241 VAVWDAATGRLLGSVPL----PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred EEEEECCCCCEeecccc----CceeeeeecCCc-eEEeCC-CccE
Confidence 99999999999877763 357778877777 555544 4543
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=1.1e-06 Score=73.47 Aligned_cols=227 Identities=11% Similarity=0.123 Sum_probs=132.3
Q ss_pred EEEcCCCCEEEEEcCCcEEEEEcCC-CeeE-EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 91 ISFNQDHGCFAAGTDHGFRIYNCDP-FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 91 ~~~s~~~~~l~~~~~~~i~iw~~~~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
++.+.+|++||+-.|..|.|-.... .... ............-..++|++|+..+|.+... |+|+++|+.. ..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~-----G~i~vfdl~g-~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST-----GTIRVFDLMG-SE 76 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC-----CeEEEEeccc-ce
Confidence 5778999999999998888776532 2111 1122322344455678999999999998888 9999999764 33
Q ss_pred eEEee--------cCCceEEEEEecCc-------cEEE--eCCeEEEEEcCC-----CeeeEEEee---ccCCcceEEEe
Q 014007 169 IGELS--------FRSEVRSVKLRRDR-------IIVV--LEQKIFVYNFAD-----LKLLHQIET---IANPKGLCAVS 223 (432)
Q Consensus 169 ~~~~~--------~~~~v~~~~~~~~~-------~~~~--~d~~i~i~d~~~-----~~~~~~~~~---~~~~~~~~~~~ 223 (432)
+..+. ....|.++.|.+-. .+++ .+|.++-|-+.. .+..+.+.. ....+..+.++
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~ 156 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYH 156 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEc
Confidence 33333 23456677775432 2333 378777776532 233444433 35578888888
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEc---CCCCEEEEEcCCCce-----EEEEECCCCceEE
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT---QDGQLLATSSTKGTL-----VRIFNTLDGTLLQ 295 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s---p~~~~l~~~~~dg~~-----i~vwd~~~~~~~~ 295 (432)
|..+-+++ +|.....-... .+....+++-..- |..+. ++...|+.. -.+|.+-+.+...
T Consensus 157 p~h~LLlV--gG~~~~~~~~s----------~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 157 PKHRLLLV--GGCEQNQDGMS----------KASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred CCCCEEEE--eccCCCCCccc----------cccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee
Confidence 88764443 35433321000 1112222222221 11111 122222210 1233333222211
Q ss_pred EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 296 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.. ......|..|..||||+.||+...+|.|.+|++.+.+..
T Consensus 224 -~~-~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 224 -RQ-GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred -cc-ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 11 124578999999999999999999999999999987754
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.01 E-value=1e-06 Score=73.52 Aligned_cols=221 Identities=12% Similarity=0.087 Sum_probs=130.8
Q ss_pred EEEEecCccEEEe--CCeEEEEEcCCC--eeeEEEeeccCC---cceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee
Q 014007 180 SVKLRRDRIIVVL--EQKIFVYNFADL--KLLHQIETIANP---KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK 252 (432)
Q Consensus 180 ~~~~~~~~~~~~~--d~~i~i~d~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~ 252 (432)
.++.+.+|++++. |..|.|-..++. ..+...+..+++ -+.++|+||+..++++. ..|.|++||+.+..+.
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~---S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAE---STGTIRVFDLMGSELF 78 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEc---CCCeEEEEecccceeE
Confidence 3567789999884 888888776652 233333333332 35699999988655543 6799999999876554
Q ss_pred eeec-------cCCceeEEEEcCC------CCEEEEEcCCCceEEEEECC-----CCceEEEEEeCC-CcCceEEEEECC
Q 014007 253 FIMA-------HDSRIACFALTQD------GQLLATSSTKGTLVRIFNTL-----DGTLLQEVRRGA-DRAEIYSLAFSS 313 (432)
Q Consensus 253 ~~~~-------~~~~i~~~~~sp~------~~~l~~~~~dg~~i~vwd~~-----~~~~~~~~~~~~-~~~~i~~~~~s~ 313 (432)
.+.. -...|..+.|.+. ...|++-..+|. ++=|-+. ..+..+.|.... ++..|.++.++|
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~-L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ-LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccce-eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 4432 2345677777542 224566667776 7766543 223444444322 357899999999
Q ss_pred CCCEEEEEeCC-C----------eEEEEEecCCCCCCCCCC-CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 314 NAQWLAVSSDK-G----------TVHVFNLKVNSGSARSEP-RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 314 ~~~~l~~~~~d-g----------~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
..++|++|+.. . -+..|.+-++.+--.... ..... ........+++.. ..+-+........
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~-~~~~~~~~~~~~~------~~~~fs~~~~~~d 230 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI-TASSKRRGLLRIP------SFKFFSRQGQEQD 230 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc-cccccccceeecc------ceeeeeccccCCC
Confidence 99988887631 1 256676655542111000 00000 0000011111100 0000111112346
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.|..|..||||+.||+...+|.|.+|++..
T Consensus 231 ~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 231 GIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred ceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 799999999999999999999999999965
No 288
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.01 E-value=6.3e-07 Score=77.08 Aligned_cols=199 Identities=16% Similarity=0.091 Sum_probs=133.8
Q ss_pred EEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCc--eEEEEEecCccEEEe--------CCeEEEEE
Q 014007 133 VEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE--VRSVKLRRDRIIVVL--------EQKIFVYN 200 (432)
Q Consensus 133 ~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~--v~~~~~~~~~~~~~~--------d~~i~i~d 200 (432)
..++.+| ....++.+-.- .....+||..+++....+. ..+. .-.-.|++||+++++ .|.|-|||
T Consensus 8 H~~a~~p~~~~avafaRRP----G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRP----GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cceeeCCCCCeEEEEEeCC----CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 3455666 44555555443 1457899999999888776 2222 224689999999984 46899999
Q ss_pred cC-CCeeeEEEeeccCCcceEEEecCCCcEEEEeecC---------------CCCcEEEEEccCCceee---e--eccCC
Q 014007 201 FA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKF---I--MAHDS 259 (432)
Q Consensus 201 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------------~d~~i~i~d~~~~~~~~---~--~~~~~ 259 (432)
.. ..+.+.++..+.-.-..+.+.||++.++++.+|- .+..+.+.|..++.+.. + ..|..
T Consensus 84 ~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~l 163 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQL 163 (305)
T ss_pred CcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccc
Confidence 98 5677777776655555788999999888876441 22445555555554322 3 34777
Q ss_pred ceeEEEEcCCCCEEEEEcCCCc------eEEEEECCCCceEEEEEeC-----CCcCceEEEEECCCCCEEEEEe-CCCeE
Q 014007 260 RIACFALTQDGQLLATSSTKGT------LVRIFNTLDGTLLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTV 327 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~------~i~vwd~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i 327 (432)
.|..+++.++|..++..-..|. .|-+++ .++.+..+... .....+-+|+++.++.++++.+ ..|.+
T Consensus 164 SiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 164 SIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 8999999999987666554442 144443 33333333321 1236799999999999887766 78899
Q ss_pred EEEEecCCCC
Q 014007 328 HVFNLKVNSG 337 (432)
Q Consensus 328 ~iwd~~~~~~ 337 (432)
.+||..+++.
T Consensus 242 ~~~d~~tg~~ 251 (305)
T PF07433_consen 242 AVWDAATGRL 251 (305)
T ss_pred EEEECCCCCE
Confidence 9999999984
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=4.5e-08 Score=91.66 Aligned_cols=235 Identities=13% Similarity=0.071 Sum_probs=163.9
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC------------CeEEEecCCCCCCCCC
Q 014007 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC------------NILALVGGGPDPQYPL 155 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~s~~~d~~~~~ 155 (432)
-.++.|+|.| ++|.|+..-|.+-|..+.+.+ ..++ .|...|+.+.|.| ....+++++..
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~s~q~i--qsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~----- 88 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSRSLQLI--QSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS----- 88 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehhhhhhh--hccc-cCccceeEEEeccCCCchhccCccccceeEEecccc-----
Confidence 5678999876 788888878988887666555 5554 6889999998865 23567888887
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEec---Cc-cEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR---DR-IIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~---~~-~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
|.|.+||...+..+..+. +..++..++|-+ +. .+++ ...+|.+|+..+|+.............++.+.|-..
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 999999999998888888 788999999876 33 2333 267999999999998887766555666677777544
Q ss_pred cEEEEeecCCCCcEEEEEccC--------CceeeeeccCC-------------------------ceeEEEEcCCCCEEE
Q 014007 228 SLVLVCPGLQKGQVRVEHYAS--------KRTKFIMAHDS-------------------------RIACFALTQDGQLLA 274 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~--------~~~~~~~~~~~-------------------------~i~~~~~sp~~~~l~ 274 (432)
.-+.+. | ..|.+.+-+.-. ++.+....|.. ....++|+|.-+.++
T Consensus 169 rh~~~l-~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 169 RHFCVL-G-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred ceEEEE-c-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 433332 2 456666555432 11111112211 012356788666555
Q ss_pred EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC--CEEEEEeCCCeEEEEEecCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~~ 336 (432)
....... +.++|++-..++...... .+.+.-+.+-|++ ..|.+.-.||.+.+|-.+...
T Consensus 247 fi~~pre-llv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 247 FITFPRE-LLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EEEeccc-eEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 5666677 999999988888887753 3555566776665 468888899999999876543
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=2.9e-07 Score=75.66 Aligned_cols=234 Identities=10% Similarity=0.007 Sum_probs=145.3
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe-e-cCCceE---EEEEecCccEEEe-CCeEEEEEcCCCeeeEEEeec
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S-FRSEVR---SVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETI 213 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-~-~~~~v~---~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~ 213 (432)
+-..++.|+.. |...+|...+.+....+ . +...|. ..+-+.-...+++ |.+++++++.-+.....+...
T Consensus 83 kc~~la~gG~~-----g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGAS-----GQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEecccc-----ceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 34567777666 99999998765432222 2 333222 2223333344443 778888887654333322222
Q ss_pred cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
.-....+.++++++.. ++.| ....|..|.++..... ........-.+..|+.....+|++..||+ +.|||++
T Consensus 158 ~~~~ns~~~snd~~~~--~~Vg-ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~-~~I~DVR 233 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWG--SSVG-DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGT-CAIYDVR 233 (344)
T ss_pred ccceeeeEEcCCCceE--EEec-CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCc-EEEEEec
Confidence 2225678899998854 4444 6788888988763222 22334455678899999999999999999 9999999
Q ss_pred CCceEEEEE---eCCCcCceEEEEECCCCC--EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 290 DGTLLQEVR---RGADRAEIYSLAFSSNAQ--WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 290 ~~~~~~~~~---~~~~~~~i~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
......... ...|.+.+..+.|++-|. +|...-.=+.+++-|+++++..+.+ .++
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I--------------------~i~ 293 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI--------------------VIP 293 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE--------------------ecC
Confidence 765443322 234788999999998664 4444445678999999998743211 000
Q ss_pred ceeecceeeEEEEecCC-CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 365 KYFSSEWSVAQFRLVEG-SPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
. . ....|.. .|....|+.++..+.+.+++ .++-|+++.
T Consensus 294 ~---d-----~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 294 D---D-----VERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred c---c-----ccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 0 0 1122332 37778888888877777765 345555544
No 291
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=5.2e-08 Score=90.45 Aligned_cols=236 Identities=10% Similarity=0.077 Sum_probs=154.4
Q ss_pred CCCCCcccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007 73 LPSPAESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 73 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
......+.+.+|...|.-+.|+.+.+-|.++..+| |.+|-+-.+.-.... +.....+.|.+|+|+.+|..+.-.-.|
T Consensus 59 snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~kIcIvYeD- 136 (1189)
T KOG2041|consen 59 SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGTKICIVYED- 136 (1189)
T ss_pred cccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCcEEEEEEcc-
Confidence 33344578999999999999999999999888667 999988655433212 223466788999999999888777777
Q ss_pred CCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCC-------eeeEEEe----eccCC
Q 014007 152 QYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADL-------KLLHQIE----TIANP 216 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~-------~~~~~~~----~~~~~ 216 (432)
|.|.+=.++. ..+.--. .......+.|++|...+. .+|.+.+||.... .+..... .....
T Consensus 137 ----GavIVGsvdG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~k 211 (1189)
T KOG2041|consen 137 ----GAVIVGSVDG-NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTK 211 (1189)
T ss_pred ----CCEEEEeecc-ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcc
Confidence 8888776543 3332222 223345788999987666 4899999996531 1111111 11112
Q ss_pred cceEEE--------ecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc-------
Q 014007 217 KGLCAV--------SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT------- 281 (432)
Q Consensus 217 ~~~~~~--------~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~------- 281 (432)
+..+.| -|+...+++.. .+|.+.+..-.+...-.+....-.+..+.|+++|..|++++.+..
T Consensus 212 ia~i~w~~g~~~~v~pdrP~lavcy---~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~ 288 (1189)
T KOG2041|consen 212 IAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDS 288 (1189)
T ss_pred ccceeeccCccccCCCCCCEEEEEE---cCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCcccc
Confidence 323333 24555555444 678887765544333333334467889999999999999987531
Q ss_pred -eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 282 -LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 282 -~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
.|.++. .-|+.+.+++.. ...|++++|-..|-.+|.+
T Consensus 289 n~v~Fys-p~G~i~gtlkvp--g~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 289 NKVHFYS-PYGHIVGTLKVP--GSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred ceEEEec-cchhheEEEecC--CceeeeeEEcCCceEEEEE
Confidence 156664 567788888854 3679999997766555543
No 292
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=2.7e-07 Score=86.63 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=78.5
Q ss_pred EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---------CCCeEEEEEecCCCCCCCCC
Q 014007 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---------DKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~ 342 (432)
++|.|...|+ |.++|+.++..-..+.. |...|.++.|-...+++-.+. .-+.+.+-|+++|....
T Consensus 439 LvAvGT~sGT-V~vvdvst~~v~~~fsv--ht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~--- 512 (1062)
T KOG1912|consen 439 LVAVGTNSGT-VDVVDVSTNAVAASFSV--HTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR--- 512 (1062)
T ss_pred eEEeecCCce-EEEEEecchhhhhhhcc--cccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc---
Confidence 6788999999 99999999988888875 678999999987666554322 23467788888876221
Q ss_pred CCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+.-+.. .+.+|..+..|..+++|+..=.|.-+-+|++.
T Consensus 513 ------------------------------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 513 ------------------------------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred ------------------------------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhc
Confidence 111122 23679999999999999999999999999883
No 293
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=3.7e-07 Score=75.11 Aligned_cols=189 Identities=11% Similarity=0.044 Sum_probs=118.9
Q ss_pred CCeEEEEEcCCCee-eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC--CceeEEEEcCC
Q 014007 193 EQKIFVYNFADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD--SRIACFALTQD 269 (432)
Q Consensus 193 d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~sp~ 269 (432)
.|...+|.+.+.+. ++....+.+.+..+.=.-+...-++.+ +.|.++++.++..+..+.. .|. -.+.++.+++|
T Consensus 93 ~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~--sndht~k~~~~~~~s~~~~-~h~~~~~~ns~~~snd 169 (344)
T KOG4532|consen 93 SGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIA--SNDHTGKTMVVSGDSNKFA-VHNQNLTQNSLHYSND 169 (344)
T ss_pred cceeeeecccCcccceeeecccccchhhhhhhcccccceeec--cCCcceeEEEEecCcccce-eeccccceeeeEEcCC
Confidence 56888998876443 333334444443322222222223443 3677778777766443322 222 23889999999
Q ss_pred CCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC
Q 014007 270 GQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD 348 (432)
Q Consensus 270 ~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (432)
++++++.+.... |..|.+... +.+..+........-.+..|+.....+|++..||++.|||++.........
T Consensus 170 ~~~~~~Vgds~~-Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~------ 242 (344)
T KOG4532|consen 170 PSWGSSVGDSRR-VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI------ 242 (344)
T ss_pred CceEEEecCCCc-ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh------
Confidence 999999998888 999987643 333232222234556788999999999999999999999999876322110
Q ss_pred CCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC--EEEEEecCCeEEEEEecCCCCCcc
Q 014007 349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN--TVVILGMDGSFYRCQFDPVNGGEM 417 (432)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~v~iw~~~~~~~~~~ 417 (432)
-.+-..|.|.+..+.|++-|. +|+..-.-+.+.+-++ .++..+
T Consensus 243 ------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~--R~~~~~ 287 (344)
T KOG4532|consen 243 ------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT--RNYVNH 287 (344)
T ss_pred ------------------------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc--ccCcee
Confidence 111234788999999998554 4555555677777554 444433
No 294
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=4.9e-09 Score=106.18 Aligned_cols=195 Identities=13% Similarity=0.204 Sum_probs=147.1
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...|-..|.++.=+|...+.++|+ |+.|++|....++.+..... .....+..+.|+.+|..+..+..| |.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt--~g~s~vtr~~f~~qGnk~~i~d~d-----g~l~ 2276 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT--AGNSRVTRSRFNHQGNKFGIVDGD-----GDLS 2276 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec--cCcchhhhhhhcccCCceeeeccC-----Ccee
Confidence 344567888888899888888887 55599999887777754444 345899999999999999988888 9999
Q ss_pred EEeCCCCceeEEee-cCCceEEEEEecCccEEE---e-CCeEEEEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---L-EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~-d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+|.+. .++....+ |.....+..|-..+..-+ . ++.+.+||..-. ..++ ..|.+.++++++.|... ++
T Consensus 2277 l~q~~-pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q--ll 2351 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ--LL 2351 (2439)
T ss_pred ecccC-CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce--EE
Confidence 99976 44445555 888888888877333222 1 678999996432 2334 67888999999999865 34
Q ss_pred EeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 232 VCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
+ +|+.+|.|++||++...++. ++. ++ ...++++|+..|. |+||++.....++.+..
T Consensus 2352 i-sggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~-ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2352 I-SGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGN-IKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred E-ecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccc-eEEEEccccchhhcCch
Confidence 4 46699999999999865432 322 44 5678999999999 99999998888887764
No 295
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.95 E-value=2.1e-08 Score=83.93 Aligned_cols=254 Identities=13% Similarity=0.202 Sum_probs=152.0
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-e----eEEee-------------cCCceEEEEEecCc--
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-C----IGELS-------------FRSEVRSVKLRRDR-- 187 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~----~~~~~-------------~~~~v~~~~~~~~~-- 187 (432)
....|+++.|...|.++++|+.. |.|.+|.-.... + ..+++ -...|..+.|-.++
T Consensus 25 ead~ItaVefd~tg~YlatGDkg-----GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKG-----GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEeccccceEeecCCC-----ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 45678889999999999999998 999999754321 1 11122 23468888887653
Q ss_pred -cEEEe--CCeEEEEEcCCCee-------------------e--------EEE----------------eeccCCcceEE
Q 014007 188 -IIVVL--EQKIFVYNFADLKL-------------------L--------HQI----------------ETIANPKGLCA 221 (432)
Q Consensus 188 -~~~~~--d~~i~i~d~~~~~~-------------------~--------~~~----------------~~~~~~~~~~~ 221 (432)
.++++ |.+|++|.+..... + -.+ ..|.-.+.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 34443 88999998754310 0 000 11222233455
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccC--Cc--eeeeecc-----CCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCC
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS--KR--TKFIMAH-----DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~--~~~~~~~-----~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
+..|.+.+ .+ ..|-.|.+|++.. +. +.-+..| ..-|++..|+|. ...+.-.+..|. |++-|++..
T Consensus 180 ~NsD~et~--lS--aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlRq~ 254 (460)
T COG5170 180 FNSDKETL--LS--ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLRQS 254 (460)
T ss_pred ecCchhee--ee--ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhhhh
Confidence 55554433 22 2678899998875 22 2223333 345889999994 456677788899 999999842
Q ss_pred c------eEEEE--EeCC------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC-CCCCCCCCCCCCCCCCCCc
Q 014007 292 T------LLQEV--RRGA------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG-SARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 292 ~------~~~~~--~~~~------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 356 (432)
. .+... .+-. ....|..+.|+++|+++++-+ -.+|+|||++..+. +++++.|..
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~---------- 323 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCD---------- 323 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHH----------
Confidence 1 11111 1100 114688899999999998765 46899999987652 222211100
Q ss_pred eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+...+.......--+. -..+.||.|.+.+.+|+.....-||-.+..
T Consensus 324 --l~~~l~d~YEnDaifd--------kFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 324 --LMDELNDVYENDAIFD--------KFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred --HHHHHHhhhhccceee--------eEEEEecCCcccccccccccceeeeccccC
Confidence 0000000000000000 124788999999999999999998876554
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=1.2e-06 Score=81.60 Aligned_cols=221 Identities=11% Similarity=0.106 Sum_probs=126.6
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCc-------ceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-------GIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-------~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
..+.+++ ++.+.-+|.++++......+.... ...+ ....... +..+++ ..+ +.++.+|.++|+.
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~v~v~-~~~-----g~l~ald~~tG~~ 142 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG-GKVYIG-SEK-----GQVYALNAEDGEV 142 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC-CEEEEE-cCC-----CEEEEEECCCCCC
Confidence 3444444 444777888777777665553100 0000 0112222 333333 344 8999999999999
Q ss_pred eEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCc-----ceEEEecCCCcEEEEeecCCCCcE
Q 014007 169 IGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 169 ~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+.+......+.+--.-.++.+++ .++.|+.+|.++|+.+.......... ....+. ++.+++. ..++.+
T Consensus 143 ~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~---~~~g~v 217 (394)
T PRK11138 143 AWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVG---GDNGRV 217 (394)
T ss_pred cccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEE---cCCCEE
Confidence 88887444443322222555554 37899999999999887765421110 111111 2333332 357888
Q ss_pred EEEEccCCceeeeeccCC--------ceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 242 RVEHYASKRTKFIMAHDS--------RIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 242 ~i~d~~~~~~~~~~~~~~--------~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
..+|..++...-...... ....+.-+| .+..++.++.++. +..+|..+|+.+...... ....+..
T Consensus 218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~----~~~~~~~ 292 (394)
T PRK11138 218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN-LVALDLRSGQIVWKREYG----SVNDFAV 292 (394)
T ss_pred EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe-EEEEECCCCCEEEeecCC----CccCcEE
Confidence 888887754322111000 011111223 3456777778898 999999999887655421 1122222
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
++..|+.++.+|.++.+|..+++.
T Consensus 293 --~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 293 --DGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred --ECCEEEEEcCCCeEEEEECCCCcE
Confidence 456777788899999999998873
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=3.7e-06 Score=72.56 Aligned_cols=213 Identities=15% Similarity=0.200 Sum_probs=132.7
Q ss_pred CeEEEEeCCCCceeEEeecCC---ceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 156 NKVMIWDDHQSRCIGELSFRS---EVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
|.|..||..+|+.+....... ...+..+..++.+++ .++.|+.||..+|+.+..... ...+.... ...++.++
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVY 80 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccc
Confidence 899999999999999887422 222223435555555 388999999999999888875 33333332 34445555
Q ss_pred EEeecCCCCcEEEEEccCCceeee--eccC---CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC-
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKFI--MAHD---SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA- 304 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~~--~~~~---~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~- 304 (432)
+++ .++.+..+|..++.+.-. .... ..........++..++++..++. |..+|.++|+.+..+.......
T Consensus 81 v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 81 VGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK-LVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE-EEEEETTTTEEEEEEESSTT-SS
T ss_pred ccc---ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc-EEEEecCCCcEEEEeecCCCCCC
Confidence 554 567999999877655332 2111 11122223334778888888998 9999999999998887632111
Q ss_pred -c------e-EEEEECCCCCEEEEEeCCCe-EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007 305 -E------I-YSLAFSSNAQWLAVSSDKGT-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ 375 (432)
Q Consensus 305 -~------i-~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (432)
. + ..+.+. ++ .+..++.++. +.+ |+.+++.+ |
T Consensus 157 ~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~--------------------------------w---- 197 (238)
T PF13360_consen 157 SPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL--------------------------------W---- 197 (238)
T ss_dssp --EEEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE--------------------------------E----
T ss_pred cceeeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE--------------------------------E----
Confidence 1 1 233333 44 6666777775 555 98888621 1
Q ss_pred EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcc
Q 014007 376 FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEM 417 (432)
Q Consensus 376 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~ 417 (432)
....+.+.. ....++..|++++.+|.|+.|++ .+|+.+
T Consensus 198 -~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~--~tG~~~ 235 (238)
T PF13360_consen 198 -SKPISGIYS-LPSVDGGTLYVTSSDGRLYALDL--KTGKVV 235 (238)
T ss_dssp -EECSS-ECE-CEECCCTEEEEEETTTEEEEEET--TTTEEE
T ss_pred -EecCCCccC-CceeeCCEEEEEeCCCEEEEEEC--CCCCEE
Confidence 111111222 13467888888889999999665 555543
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=2.6e-06 Score=73.57 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=129.3
Q ss_pred CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec
Q 014007 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR 185 (432)
Q Consensus 106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 185 (432)
+.|..||..+++......+. .............++..++. +.+ +.|+.||..+|+.+..+.....+.......
T Consensus 3 g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~-~~~-----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~ 75 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVA-SGD-----GNLYALDAKTGKVLWRFDLPGPISGAPVVD 75 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEE-ETT-----SEEEEEETTTSEEEEEEECSSCGGSGEEEE
T ss_pred CEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEE-cCC-----CEEEEEECCCCCEEEEeeccccccceeeec
Confidence 34888888888887766653 11222222233234444444 334 899999999999998888544433332334
Q ss_pred CccEE-Ee-CCeEEEEEcCCCeeeEEE-eeccC---CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccC
Q 014007 186 DRIIV-VL-EQKIFVYNFADLKLLHQI-ETIAN---PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHD 258 (432)
Q Consensus 186 ~~~~~-~~-d~~i~i~d~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~ 258 (432)
++.++ .. ++.|+.+|..+|+.+... ..... ..........++.+++.. .++.|..+|.+++... ......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCC
Confidence 44444 43 789999999999998874 32211 112234444466555443 4799999999886653 222222
Q ss_pred Cc----------e-eEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007 259 SR----------I-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 259 ~~----------i-~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
.. + ..+.+ .++ .++.++.++..+.+ |+.+++.+.... . ..+..+ ...++..|+.++.++.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~--~~~~~~-~~~~~~~l~~~~~~~~l 224 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVI-SDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I--SGIYSL-PSVDGGTLYVTSSDGRL 224 (238)
T ss_dssp T-SS--EEEETTEEEEEEC-CTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S--S-ECEC-EECCCTEEEEEETTTEE
T ss_pred CCCCcceeeecccccceEE-ECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C--CCccCC-ceeeCCEEEEEeCCCEE
Confidence 11 1 22333 245 67777777752455 999999764222 1 223331 34577788888799999
Q ss_pred EEEEecCCC
Q 014007 328 HVFNLKVNS 336 (432)
Q Consensus 328 ~iwd~~~~~ 336 (432)
..||+++++
T Consensus 225 ~~~d~~tG~ 233 (238)
T PF13360_consen 225 YALDLKTGK 233 (238)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCC
Confidence 999999987
No 299
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.92 E-value=1.4e-06 Score=75.91 Aligned_cols=241 Identities=15% Similarity=0.124 Sum_probs=147.0
Q ss_pred EEEEcCCCCEEEEEc---------CCc--EEEEEcCCCeeEEEeecccCcceeE----EEEeeeCCeEEEecCCCCCCCC
Q 014007 90 HISFNQDHGCFAAGT---------DHG--FRIYNCDPFREIFRRDFERGGGIGV----VEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~---------~~~--i~iw~~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
.+..+||++.+++++ +.+ |.+||..+........++..+...+ ..+..+.++.++....-.|.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa-- 117 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA-- 117 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS--
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC--
Confidence 467899999887652 122 8999999988776666653212211 12345566655554433322
Q ss_pred CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEE-EeCCeEEEEEcC-CCeeeEEEee----ccCCc-ceEEEecCCC
Q 014007 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-VLEQKIFVYNFA-DLKLLHQIET----IANPK-GLCAVSQGVG 227 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~d~~i~i~d~~-~~~~~~~~~~----~~~~~-~~~~~~~~~~ 227 (432)
..|.+.|+..++.+.++...+...-.-..+++-.. +.||.+....+. .|+..+.... ..+++ ..-++...+.
T Consensus 118 -~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 118 -TSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp -EEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred -CeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 67889999999998888866655544444444222 249998888887 4554432211 11112 2234445555
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcCCC---------ceEEE
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSSTKG---------TLVRI 285 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~dg---------~~i~v 285 (432)
.+++.+ .+|.|+-.|+.......... ..+.-.-+++++..+.|++.-..| +.|.+
T Consensus 197 ~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 197 RLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp EEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred eEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 666654 78999998888754322110 122345578887666555533221 24999
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCCC
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~ 339 (432)
+|+.+++.+.++.. +.++.+|..+.+.+ +|++.+ .++.|.+||..+++.+.
T Consensus 274 ~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 274 YDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 99999999999984 35688999998876 555544 68999999999998543
No 300
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.90 E-value=6.5e-08 Score=79.05 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=108.7
Q ss_pred EEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCce-----EEEEEecCccEEEe--------CCeEEEEEcCCCeeeE
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV-----RSVKLRRDRIIVVL--------EQKIFVYNFADLKLLH 208 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~ 208 (432)
.-++++..| |.+.+++.+.. ..+.+.-++ .+.++-..+.++.+ -+..+.|+++..+.+.
T Consensus 102 t~V~~~~~d-----g~~~v~s~~~~---~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 102 NRVCIGYAD-----GSLAVFSTDKD---LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred CceEecCCC-----ceEEEEechHH---HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 345666777 99999986542 112121111 12222333444432 3456677765433222
Q ss_pred EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEE
Q 014007 209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRI 285 (432)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~v 285 (432)
.-......+.+++-+|..++++ + +|+.||.+.+||.+.. ....+..|+.+|..+-|+| ++..|+++++||. +..
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v-~-cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs-lw~ 250 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLV-C-CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS-LWH 250 (319)
T ss_pred ccccccccchhhhCCcccccEE-E-EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCc-EEE
Confidence 2122233477888888877654 3 4679999999999984 4556789999999999999 7789999999999 999
Q ss_pred EECCCCceEEE---------------------EEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 286 FNTLDGTLLQE---------------------VRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 286 wd~~~~~~~~~---------------------~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
||..+ +.+.. +..- .....|.+ |.--|..|++|++-+.|++++
T Consensus 251 wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 99653 22210 0000 00012222 333577888998888888875
No 301
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.87 E-value=1.6e-06 Score=85.65 Aligned_cols=200 Identities=14% Similarity=0.135 Sum_probs=124.6
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--C-CeEEEEEcCCC
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--E-QKIFVYNFADL 204 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d-~~i~i~d~~~~ 204 (432)
....|.++.|..+...++.+... |.|.+-|..+......=.....|.+++|+||...++. . +++.+.+ .+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~-----G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITAL-----GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEEecC-----CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccc
Confidence 34688999987766555555555 8899988777654333336789999999999988873 3 3444432 211
Q ss_pred ------------------------eeeEEEeecc---------------------CCcceEEEecCCCcEEEEee-cCCC
Q 014007 205 ------------------------KLLHQIETIA---------------------NPKGLCAVSQGVGSLVLVCP-GLQK 238 (432)
Q Consensus 205 ------------------------~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~-g~~d 238 (432)
+.-..+++.. +.-..+.|..||+.+++..- ...+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 1111222110 11224777778776554211 1133
Q ss_pred -CcEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCceEEEEEe--CCCcCceEEEEE
Q 014007 239 -GQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAF 311 (432)
Q Consensus 239 -~~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~~~~~~~--~~~~~~i~~~~~ 311 (432)
..|++||-.. .+... ....+.-.+++|-|.|..+++-. .|+. |.+|. ++|-.-..|.. ......+..++|
T Consensus 221 ~RkirV~drEg-~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 221 TRKIRVYDREG-ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred ceeEEEecccc-hhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchheeee
Confidence 7999999873 33222 22333446899999999988743 4556 89997 45533332221 123345899999
Q ss_pred CCCCCEEEE---EeCCCeEEEEEecCCC
Q 014007 312 SSNAQWLAV---SSDKGTVHVFNLKVNS 336 (432)
Q Consensus 312 s~~~~~l~~---~~~dg~i~iwd~~~~~ 336 (432)
+.++..||+ ......|++|-+.+..
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeE
Confidence 999999987 4455569999988765
No 302
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.6e-08 Score=84.62 Aligned_cols=273 Identities=13% Similarity=0.145 Sum_probs=173.6
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--C-ceeEEee-cCCceEEEEEecCccEEEe----CCeEEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ--S-RCIGELS-FRSEVRSVKLRRDRIIVVL----EQKIFVY 199 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~--~-~~~~~~~-~~~~v~~~~~~~~~~~~~~----d~~i~i~ 199 (432)
|...|..+ +.....++.+++-| |.++.|--.. + +.+..+. |...|.+++.+-++.+.++ |..++++
T Consensus 8 hrd~i~hv-~~tka~fiiqASlD-----Gh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHV-FPTKAKFIIQASLD-----GHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeE-eeehhheEEeeecc-----hhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence 55545444 33445677888888 9999997432 1 2333344 7888999999999998885 7899999
Q ss_pred EcCCCeeeEEEeeccCCcceEEEecCC-CcEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCCCCEEEE
Q 014007 200 NFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLAT 275 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~ 275 (432)
|+.+-..+..++...-+-.+..+...| ....++.+...++.+.++|-.... ...-.-|..+|.++.+.+-+..+++
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred EeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 998866554443332222222222233 222344445578999999987733 2334569999999999999999999
Q ss_pred EcCCCceEEEEECCC------CceEEEEEe-------CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007 276 SSTKGTLVRIFNTLD------GTLLQEVRR-------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~------~~~~~~~~~-------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 342 (432)
....|. |.-|.... .+....++. ...+....++.|+|+|..+++-+.|..|++++..+++.++.++
T Consensus 162 iD~~gm-VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 162 IDISGM-VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccccce-eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999998 99998762 111111110 1123568899999999999999999999999999999887765
Q ss_pred CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-CceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-SPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.........+.+...+..-.+.+...-++ .+.-|+. .-..+.|...|++|+-|+-=| |++.+++.
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaver---elek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVER---ELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHh---hHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 33332222222221111111110000011 1112221 234578888999999888766 67766655
No 303
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=5.7e-09 Score=93.82 Aligned_cols=174 Identities=15% Similarity=0.176 Sum_probs=122.1
Q ss_pred eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--------ceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--------RTKFIMAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
+..+.+|...++.++--.+.+.++- .+.|.+|++|.++.. ...++..|..+|.++.|-.+-++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiS---ASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFIS---ASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceee---ccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--
Confidence 4456677777776655444444432 348999999998761 234567999999999999988887654
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECC--CCCEEEEE-eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS--NAQWLAVS-SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS 355 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (432)
||. |.+||.--++++.........+.+..+..-+ +...+..| +...+|+++|.+..+
T Consensus 803 D~g-iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce------------------- 862 (1034)
T KOG4190|consen 803 DGG-IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE------------------- 862 (1034)
T ss_pred cCc-ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-------------------
Confidence 677 9999988887776443322223333333333 34444444 688999999999876
Q ss_pred ceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcce
Q 014007 356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMT 418 (432)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~ 418 (432)
+..+|.+....++++.+.+++..+.|++++.+-..|.+.+ +|..+|+.+.
T Consensus 863 -----------~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~--LDaR~G~vIN 912 (1034)
T KOG4190|consen 863 -----------WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI--LDARNGKVIN 912 (1034)
T ss_pred -----------ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE--EecCCCceec
Confidence 2234444445567778999999999999999999999998 6667776443
No 304
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.85 E-value=3.6e-06 Score=78.45 Aligned_cols=217 Identities=12% Similarity=0.082 Sum_probs=125.6
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
..+++++ ++.+..+|.++++......+. + .+.+ .... ++..++.. .+ +.|..+|.++|+.+..+...
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~---~~~ssP~v~-~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVA-G---EALSRPVVS-DGLVLVHT-SN-----GMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCC-C---ceecCCEEE-CCEEEEEC-CC-----CEEEEEEccCCCEeeeecCC
Confidence 3455555 455888999888887665553 1 1111 1122 34444433 34 89999999999998887733
Q ss_pred Cce------EEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCC-------cceEEEec--CCCcEEEEeecCCC
Q 014007 176 SEV------RSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANP-------KGLCAVSQ--GVGSLVLVCPGLQK 238 (432)
Q Consensus 176 ~~v------~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~g~~d 238 (432)
.+. ...... ++.+++ .++.+..+|..+|+.+......... ...+..+| .++.+++.. .+
T Consensus 190 ~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~ 265 (394)
T PRK11138 190 VPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YN 265 (394)
T ss_pred CCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cC
Confidence 221 111222 233333 3788999999998876554321100 00011111 234444432 57
Q ss_pred CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 318 (432)
|.+..+|..++...-..... ....+.. .+..|+.++.+|. |..+|..+++.+-....... ....+... .+.+|
T Consensus 266 g~l~ald~~tG~~~W~~~~~-~~~~~~~--~~~~vy~~~~~g~-l~ald~~tG~~~W~~~~~~~-~~~~sp~v--~~g~l 338 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREYG-SVNDFAV--DGGRIYLVDQNDR-VYALDTRGGVELWSQSDLLH-RLLTAPVL--YNGYL 338 (394)
T ss_pred CeEEEEECCCCCEEEeecCC-CccCcEE--ECCEEEEEcCCCe-EEEEECCCCcEEEcccccCC-CcccCCEE--ECCEE
Confidence 89999998886543222111 1112222 4567788888999 99999999987654432111 11222222 24567
Q ss_pred EEEeCCCeEEEEEecCCC
Q 014007 319 AVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 319 ~~~~~dg~i~iwd~~~~~ 336 (432)
+.++.+|.|++.|..+++
T Consensus 339 ~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 339 VVGDSEGYLHWINREDGR 356 (394)
T ss_pred EEEeCCCEEEEEECCCCC
Confidence 788899999999999987
No 305
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=6.8e-08 Score=83.76 Aligned_cols=158 Identities=9% Similarity=0.061 Sum_probs=98.5
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeee--eccCCceeEEEEcCCCCEEEEEcC---CCceEEEEECCCCc
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFI--MAHDSRIACFALTQDGQLLATSST---KGTLVRIFNTLDGT 292 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~--~~~~~~i~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~ 292 (432)
+..++.++.++++. .+....+++++... .+.+ ..-...-+++.|..+......+.. ... +.+|....+.
T Consensus 68 ~~~s~~~~llAv~~---~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~-~di~s~~~~~ 143 (390)
T KOG3914|consen 68 VLTSDSGRLVAVAT---SSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYS-FDILSADSGR 143 (390)
T ss_pred cccCCCceEEEEEe---CCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCcee-eeeecccccC
Confidence 44555555444332 44555566665533 1111 112223344444444444444333 334 5666655566
Q ss_pred eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS 372 (432)
Q Consensus 293 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (432)
+...+- |-.-++.++|+||+++|+++..|..|+|-.....-.+..+
T Consensus 144 ~~~~lG---hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf------------------------------- 189 (390)
T KOG3914|consen 144 CEPILG---HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF------------------------------- 189 (390)
T ss_pred cchhhh---hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-------------------------------
Confidence 554443 7789999999999999999999999999877654322111
Q ss_pred eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
.-+|..-|..++.-++ ..|+++|.|++|++|++ .+|+.+....
T Consensus 190 ---clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~--~sgk~L~t~d 232 (390)
T KOG3914|consen 190 ---CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI--TSGKLLDTCD 232 (390)
T ss_pred ---ccccHhheeeeeeccC-ceeeecCCCCcEEEEec--ccCCcccccc
Confidence 3368888999988654 66999999999999998 4455554443
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=3.1e-08 Score=84.12 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=114.9
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-----ce
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-----TL 293 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-----~~ 293 (432)
.++|+-+-....++ .| .+..|-+-|+.++..+.+. ..+.|.++.|...++++..|..+|. |...|++.+ .+
T Consensus 216 ~CawSlni~gyhfs-~G-~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s~nLv~~GcRnge-I~~iDLR~rnqG~~~~ 291 (425)
T KOG2695|consen 216 SCAWSLNIMGYHFS-VG-LSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGE-IFVIDLRCRNQGNGWC 291 (425)
T ss_pred hhhhhhccceeeec-cc-ccceeEEEEeecccccccc-cchhHHHHHhcccCCeeEecccCCc-EEEEEeeecccCCCcc
Confidence 34666443333322 34 5778888898888777766 6788999999998999999999999 999999864 56
Q ss_pred EEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007 294 LQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS 372 (432)
Q Consensus 294 ~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (432)
...+. |...|+++..-. ++++|.+.+.+|+|++||.+-.++-+ .
T Consensus 292 a~rly---h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--------------------------------~ 336 (425)
T KOG2695|consen 292 AQRLY---HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--------------------------------S 336 (425)
T ss_pred eEEEE---cCcchhhhhhhccccceEeeccCcCceeEeeehhhhccc--------------------------------c
Confidence 66666 778899988766 78899999999999999998766421 1
Q ss_pred eEEEEecCCCceE--EEEccCCCEEEEEecCCeEEEEEecC
Q 014007 373 VAQFRLVEGSPYI--VAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 373 ~~~~~~~~~~v~~--~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.+..+|.+.-.- +...+....+++++.|-..+||.++.
T Consensus 337 V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 337 VMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred eeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 3455566432222 23345667888999999999999964
No 307
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=2.4e-06 Score=80.49 Aligned_cols=226 Identities=8% Similarity=-0.020 Sum_probs=141.2
Q ss_pred cCCCCEEEEEcC-Cc-EEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCC-------------CCCCC
Q 014007 94 NQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDP-------------QYPLN 156 (432)
Q Consensus 94 s~~~~~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~-------------~~~~~ 156 (432)
.-||++|..-.. ++ |...+++..+......+. ....+..+.+. |+..+++.++... .--.+
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iP--n~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~ 215 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELP--NVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS 215 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeeceeEeCC--CccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence 347888888773 33 666666655554333333 22223333332 3333333222210 00126
Q ss_pred eEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeC-------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 157 KVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE-------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
.+.+.|.++.+...++...+....++++++|.++++. .++...+..+...+..+... ..-++.++|+..
T Consensus 216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----~iea~vkdGK~~ 291 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----RIEEAVKAGKFK 291 (635)
T ss_pred EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----HHHHhhhCCCEE
Confidence 7888888888888888766677888999999988742 23444443332222222110 112445577755
Q ss_pred EEEeecCCCCcEEEEEccC-----CceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCce----------
Q 014007 230 VLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTL---------- 293 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~---------- 293 (432)
++ .++.|.+.|..+ ..+.....-......++++|||+++++++. +.+ |.|.|+.+.+.
T Consensus 292 ~V-----~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 292 TI-----GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred EE-----CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCCccc
Confidence 53 247899999887 345555556778899999999999887665 667 99999987552
Q ss_pred --EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 294 --LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 294 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+.+...+ ......+|.++|....+-.-|..|..|++..
T Consensus 366 ~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4444422 3456789999998887888899999999987
No 308
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.79 E-value=2.7e-07 Score=87.42 Aligned_cols=103 Identities=11% Similarity=0.195 Sum_probs=78.4
Q ss_pred EEEEcCCCCEEEEEc----CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 90 HISFNQDHGCFAAGT----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
-..|+|...+||+++ .+| |.||- ++++.. .... ....+.+++|+|....++.|-.- |.+.+|...
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq--r~Vt--~P~hatSLCWHpe~~vLa~gwe~-----g~~~v~~~~ 89 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ--RDVT--YPVHATSLCWHPEEFVLAQGWEM-----GVSDVQKTN 89 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC--cccc--cceehhhhccChHHHHHhhcccc-----ceeEEEecC
Confidence 358999999999886 344 88884 455533 3332 44566779999999999999887 999999976
Q ss_pred CCceeEEee-cCCceEEEEEecCccEEEe-C--CeEEEEEcC
Q 014007 165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL-E--QKIFVYNFA 202 (432)
Q Consensus 165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-d--~~i~i~d~~ 202 (432)
+.+.-.... |+.+|..+.|+++|..+.+ | |.|.+|...
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 655444333 9999999999999998885 3 688999765
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.5e-07 Score=79.89 Aligned_cols=248 Identities=15% Similarity=0.084 Sum_probs=170.2
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCCC-CCCCCCCe
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGP-DPQYPLNK 157 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~ 157 (432)
...|.+.|+.+.-+. .+++.+++ |+.++.|.-.. ....+.+.+. .|...+.+++.+-++..+.+.+. | ..
T Consensus 5 symhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~D-----hs 77 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVEDPD-----HS 77 (558)
T ss_pred hhcccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeeccCcc-----cc
Confidence 345888888866554 56778887 66699998644 2233334444 57788888888999999999666 7 99
Q ss_pred EEEEeCCCCceeEEeecCCceEEEEEec-Cc--c-EEE-e---CCeEEEEEcCCC--eeeEEEeeccCCcceEEEecCCC
Q 014007 158 VMIWDDHQSRCIGELSFRSEVRSVKLRR-DR--I-IVV-L---EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~--~-~~~-~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
++++|+++-..+.-++.......+.|.. .| . .++ + ++.+.++|-... +....-..|..++..+.+.+.++
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999998776554444222222233322 22 1 222 2 788999996543 23333456788999999999887
Q ss_pred cEEEEeecCCCCcEEEEEccC------Cce----------eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007 228 SLVLVCPGLQKGQVRVEHYAS------KRT----------KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~------~~~----------~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
... +....|.|.-|.... ..+ ..+........++.|+|+|..+.+-+.|.. |++++++++
T Consensus 158 s~v---SiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Drk-VR~F~~KtG 233 (558)
T KOG0882|consen 158 SAV---SIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRK-VRGFVFKTG 233 (558)
T ss_pred cee---eccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccE-EEEEEeccc
Confidence 553 344679999998874 111 112234556889999999999999999999 999999998
Q ss_pred ceEEEEEeC-------------------------------CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007 292 TLLQEVRRG-------------------------------ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (432)
Q Consensus 292 ~~~~~~~~~-------------------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 340 (432)
++++.+... .....-+.+.|...|++|+-++-=| |++.++.+++....
T Consensus 234 klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri 312 (558)
T KOG0882|consen 234 KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRI 312 (558)
T ss_pred hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEE
Confidence 766654320 0112345678888999999888666 89999999885543
No 310
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=1e-07 Score=88.91 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=143.7
Q ss_pred EeecCCceEEEEEecCccEEE--eCCeEEEEEcCC-CeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEc
Q 014007 171 ELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHY 246 (432)
Q Consensus 171 ~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 246 (432)
.++..+.+.++.++|.|+-++ +.-.+.+.|+.. +.+..-+. ...-.+..+.|++....-+-+.+ .....-.+|++
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnl 98 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNL 98 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhh
Confidence 445678888999999887666 455677888765 23322221 11234556778877654333322 24455668887
Q ss_pred cCC---ce-eeeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCce-EEEEEeCCCcCceEEEEECCCCCEEEE
Q 014007 247 ASK---RT-KFIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 247 ~~~---~~-~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~ 320 (432)
... .+ ..+.+|...|+.+.|+|. ...|++++.|.. +..||+++... +..+.. -......+.|+.....+.+
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~-vh~wd~rSp~~p~ys~~~--w~s~asqVkwnyk~p~vla 175 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTY-VHAWDMRSPHRPFYSTSS--WRSAASQVKWNYKDPNVLA 175 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeecccccc-ceeeeccCCCcceeeeec--ccccCceeeecccCcchhh
Confidence 652 22 345689999999999985 467899999999 99999998643 333332 2256678999876656666
Q ss_pred EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc-CCCEEEEEe
Q 014007 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH-QKNTVVILG 399 (432)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~ 399 (432)
.+..+.|++||++.+... +..+++|-..|+.++|.. ....+.+.+
T Consensus 176 sshg~~i~vwd~r~gs~p----------------------------------l~s~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 176 SSHGNDIFVWDLRKGSTP----------------------------------LCSLKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred hccCCceEEEeccCCCcc----------------------------------eEEecccceeeehHHHhhhhhhhhcccC
Confidence 677888999999987632 456777888888898876 445788999
Q ss_pred cCCeEEEEEecCCCC
Q 014007 400 MDGSFYRCQFDPVNG 414 (432)
Q Consensus 400 ~dg~v~iw~~~~~~~ 414 (432)
.||+|+.|+.+-.+.
T Consensus 222 ~d~tvkfw~y~kSt~ 236 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTT 236 (1081)
T ss_pred CCCceeeeccccccc
Confidence 999999999876543
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=8.1e-08 Score=91.58 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=124.7
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCC
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQ 271 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~ 271 (432)
...+..+|+++.+..+........+ .-+..+++.+ . +|...|+|.+-|.++ ..+.++.+|.+.|..+.. .|+
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v--~imR~Nnr~l--f-~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GN 228 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGV--TIMRYNNRNL--F-CGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGN 228 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCce--EEEEecCcEE--E-eecccceEEeecCCcCceeeeeeccccceeeeec--cCC
Confidence 5578888998887766655444343 3344454433 3 467899999999998 667889999999988665 788
Q ss_pred EEEEEcCC---------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007 272 LLATSSTK---------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLKVNSGSARS 341 (432)
Q Consensus 272 ~l~~~~~d---------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~ 341 (432)
.|++++.. .- |+|||++..+.+.-+..+ ....-+.|.|. ...+++++..|...+-|..+......-
T Consensus 229 lLitCG~S~R~~~l~~D~F-vkVYDLRmmral~PI~~~---~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~ 304 (1118)
T KOG1275|consen 229 LLITCGYSMRRYNLAMDPF-VKVYDLRMMRALSPIQFP---YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAG 304 (1118)
T ss_pred eEEEeecccccccccccch-hhhhhhhhhhccCCcccc---cCchhhhhcccccceEEEEecccceeeccccccCCCccc
Confidence 99998864 44 899999998877766643 23356778885 356888888999999995543321100
Q ss_pred CCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
+..+..-...+..+.+|++++.++.|..+|.|.+|.
T Consensus 305 -------------------------------~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 305 -------------------------------VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred -------------------------------eeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 111122223488999999999999999999999998
No 312
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.73 E-value=0.00013 Score=65.12 Aligned_cols=219 Identities=11% Similarity=-0.029 Sum_probs=107.2
Q ss_pred EEcCCCCEEEEEc--CCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 92 SFNQDHGCFAAGT--DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 92 ~~s~~~~~l~~~~--~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
+|.+||+.|+.++ ++. +.+.|+++++....... ..........+++...++-.... ..|+..|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg---~g~~~~g~~~s~~~~~~~Yv~~~-----~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG---PGDNTFGGFLSPDDRALYYVKNG-----RSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S---S-B-TTT-EE-TTSSEEEEEETT-----TEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC---CCCCccceEEecCCCeEEEEECC-----CeEEEEECCcCc
Confidence 6788998766555 333 77778888766533222 11111123334444444322122 688999999988
Q ss_pred eeEEee-cCCceEEEEEe--cCccEEEe-------------------------CCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007 168 CIGELS-FRSEVRSVKLR--RDRIIVVL-------------------------EQKIFVYNFADLKLLHQIETIANPKGL 219 (432)
Q Consensus 168 ~~~~~~-~~~~v~~~~~~--~~~~~~~~-------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (432)
....+. ...-+-...|. .|+..++. ...|...|+.+|+....+. ....+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH 192 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH 192 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence 766666 33334334553 45655541 2357777888877654443 4556678
Q ss_pred EEEecCCCcEEEEee-cCCC---CcEEEEEccCCceeeeeccC--CceeEEEEcCCCCEEEEEc-----CCCceEEEEEC
Q 014007 220 CAVSQGVGSLVLVCP-GLQK---GQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLATSS-----TKGTLVRIFNT 288 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~-g~~d---~~i~i~d~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~-----~dg~~i~vwd~ 288 (432)
+.++|....++..|- |..+ ..|.+.+.++...+.+..+. ..+.-=-|.|||..|.--+ .+.. |.-+|.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~-i~~~d~ 271 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW-IAGYDP 271 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE-EEEE-T
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE-EEeeCC
Confidence 899998877766652 2222 34444444444444443332 3344556899998776422 2334 777888
Q ss_pred CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007 289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (432)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 324 (432)
.+++....... .....+.-++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeC----CceeeeEEcCCCCEEEecCCC
Confidence 88866543332 235567778999987653333
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.71 E-value=6.3e-06 Score=76.49 Aligned_cols=219 Identities=14% Similarity=0.177 Sum_probs=120.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
.......+.++|+|+++++++++...||.....+.. .......+.|.+++.+.+--. . ++|.++.-
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k--------~~G~g~~~vw~~~n~yAv~~~-~-----~~I~I~kn 96 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK--------AFGSGLSFVWSSRNRYAVLES-S-----STIKIYKN 96 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE--------EEEE-SEEEE-TSSEEEEE-T-T-----S-EEEEET
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc--------ccCceeEEEEecCccEEEEEC-C-----CeEEEEEc
Confidence 344578899999999999988888888874433332 223445667777665444433 4 78999743
Q ss_pred CCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
-+.+....+.....+..+-. |.+++ .++.|.+||+.+++.+..+... ++..+.|+++++.+++++ +..+
T Consensus 97 ~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i 167 (443)
T PF04053_consen 97 FKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSI 167 (443)
T ss_dssp TEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SE
T ss_pred CccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeE
Confidence 33333344543334444433 66666 3667999999999999998753 378899999999887764 5678
Q ss_pred EEEEccCC------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 242 RVEHYASK------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 242 ~i~d~~~~------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
.+++.+.. ....+..-...|.+..|..+ .++-.+.. . |+.+ -.|+.. .+.. -..++.=+
T Consensus 168 ~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~-lkYl--~~Ge~~-~i~~--ld~~~yll 238 (443)
T PF04053_consen 168 YILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-H-LKYL--VNGETG-IIAH--LDKPLYLL 238 (443)
T ss_dssp EEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-E-EEEE--ETTEEE-EEEE---SS--EEE
T ss_pred EEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-e-EEEE--EcCCcc-eEEE--cCCceEEE
Confidence 88776655 45555544678888899765 44444444 5 7763 344332 2221 22466667
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecC
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.+.+....+.....|+.|..+.+..
T Consensus 239 gy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 239 GYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEETTTTEEEEE-TT--EEEEE--H
T ss_pred EEEccCCEEEEEECCCCEEEEEECH
Confidence 7777777888888888888887654
No 314
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.70 E-value=1.3e-05 Score=74.26 Aligned_cols=176 Identities=11% Similarity=0.087 Sum_probs=116.5
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe-----C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
..+.+-|.. +.....+. ....+..-+|+|++..++. . ..++++++.+++....+. ........+|+|||+
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 566666654 65555665 5667778899999887662 2 369999999887655554 334445789999999
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--eEEEEECCCCceEEEEEeCCCcCc
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
.+++.......-.|.++|+.++....+....+.-..-.|+|||+.|+..+..+. .|.+.|...+.. ..+.... ..
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~--~~ 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG--GG 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC--CC
Confidence 888876554455566778877766555544444457789999999887665442 167777665554 3333221 22
Q ss_pred eEEEEECCCCCEEEEEeC-CCe--EEEEEecCCC
Q 014007 306 IYSLAFSSNAQWLAVSSD-KGT--VHVFNLKVNS 336 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~-dg~--i~iwd~~~~~ 336 (432)
-..-.|+|||++|+..+. +|. |.+.|+.++.
T Consensus 328 ~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 328 NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 237889999999987764 344 5555555443
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.67 E-value=1.1e-07 Score=55.90 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=34.2
Q ss_pred eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
+.++.+|.+.|++++|+|++++|++++.||.|++|+
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 567899999999999999999999999999999996
No 316
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=80.34 Aligned_cols=143 Identities=10% Similarity=0.127 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-----ceeeeeccCCceeEEEEc
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-----RTKFIMAHDSRIACFALT 267 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-----~~~~~~~~~~~i~~~~~s 267 (432)
+..|-+-|+.+|-. +.+. ....|....|...++. +. .|..+|.|..+|++.+ ......-|.+.|+++..-
T Consensus 233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nL--v~-~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNL--VF-NGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL 307 (425)
T ss_pred cceeEEEEeecccc-cccc-cchhHHHHHhcccCCe--eE-ecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh
Confidence 66788888877643 3333 4556666677665552 23 4679999999999874 223334589999999887
Q ss_pred C-CCCEEEEEcCCCceEEEEECCCCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007 268 Q-DGQLLATSSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (432)
Q Consensus 268 p-~~~~l~~~~~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 341 (432)
. ++.+|++.+.+|+ |++||++--++ +..+.+|.....-.-+-..+....++++++|-..+||.++.+..+.++
T Consensus 308 q~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred ccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 7 8889999999999 99999998877 889998765555555566777788889999999999999998865444
No 317
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.67 E-value=1.7e-07 Score=76.68 Aligned_cols=138 Identities=13% Similarity=0.148 Sum_probs=88.4
Q ss_pred cCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEc------CCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007 235 GLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSS------TKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
+..||.+.+++.+... ...+..-...-.+.++...++++.++. .| . .+.|+++..+.+..-.. ....|
T Consensus 107 ~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d-~-~~a~~~~p~~t~~~~~~--~~~~v 182 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD-N-FYANTLDPIKTLIPSKK--ALDAV 182 (319)
T ss_pred cCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc-c-eeeeccccccccccccc--ccccc
Confidence 5589999999887611 111111111112222333444444332 23 2 56777655443322221 12458
Q ss_pred EEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 307 YSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 307 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
.+++-+|.. +.+++|+.||.+.+||.++.... ...++.|+..++.
T Consensus 183 ~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----------------------------------~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 183 TALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----------------------------------VSLLKAHKAEIWE 228 (319)
T ss_pred hhhhCCcccccEEEEecCCCeEEEEEcccccch----------------------------------HHHHHHhhhhhhh
Confidence 999999854 56677889999999999987522 2246778999999
Q ss_pred EEEcc-CCCEEEEEecCCeEEEEEec
Q 014007 386 VAFGH-QKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 386 ~~~s~-~~~~l~~~~~dg~v~iw~~~ 410 (432)
+-|+| ++..|+++++||.+..|+-.
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCC
Confidence 99999 78899999999999888754
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.66 E-value=1e-07 Score=55.98 Aligned_cols=39 Identities=31% Similarity=0.581 Sum_probs=35.2
Q ss_pred CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
++++.++.+ |...|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~--h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG--HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES--SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC--CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357778885 679999999999999999999999999997
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=1.1e-07 Score=90.57 Aligned_cols=215 Identities=13% Similarity=0.115 Sum_probs=146.9
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.....|....+|++|+-+.+.|++|+-.| |++|++.++... .... .|+..++.+..+.++....+.+.- +.-.
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e--~s~n-cH~SavT~vePs~dgs~~Ltsss~---S~Pl 1168 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME--ESVN-CHQSAVTLVEPSVDGSTQLTSSSS---SSPL 1168 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc--cccc-ccccccccccccCCcceeeeeccc---cCch
Confidence 55667788999999999999999999655 999999988766 3443 699999999988888766554432 1135
Q ss_pred EEEEeCCC-CceeEEeecCCceEEEEEecCccEEE--e-CCeEEEEEcCCCeeeEEEee----ccCCcceEEEecCCCcE
Q 014007 158 VMIWDDHQ-SRCIGELSFRSEVRSVKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIET----IANPKGLCAVSQGVGSL 229 (432)
Q Consensus 158 v~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 229 (432)
..+|+... +.....|. .-.++.|+.....-+ . .....+||+.++..+.++-. ..-..+...|+|+...+
T Consensus 1169 saLW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHHhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 78999754 33444443 335677776533322 3 46789999999877665311 12223568899987632
Q ss_pred EEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
. .|| .+||++.. .++.+......+ .-.|+|.|..++.-+ .|||+++.+.++.... -.-+.
T Consensus 1246 --l----ndG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS------EIwD~RTF~lLh~VP~----Ldqc~ 1306 (1516)
T KOG1832|consen 1246 --L----NDG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS------EIWDMRTFKLLHSVPS----LDQCA 1306 (1516)
T ss_pred --e----eCc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec------hhhhhHHHHHHhcCcc----ccceE
Confidence 2 456 47999884 344444333222 335999999887743 5999999998887763 23467
Q ss_pred EEECCCCCEEEEE
Q 014007 309 LAFSSNAQWLAVS 321 (432)
Q Consensus 309 ~~~s~~~~~l~~~ 321 (432)
+.|+..|..++..
T Consensus 1307 VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAM 1319 (1516)
T ss_pred EEeccCccchhhh
Confidence 8898888876544
No 320
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.63 E-value=0.00013 Score=67.79 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=117.7
Q ss_pred EEEcCCCCEEEEEcCC------------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 91 ISFNQDHGCFAAGTDH------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 91 ~~~s~~~~~l~~~~~~------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
++.+|.|..+|...+. .|+||+... +......+. + ..+..+.|..+...++.. .| |.+
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG-~ll~~i~w~--~-~~iv~~~wt~~e~LvvV~-~d-----G~v 103 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG-KLLSSIPWD--S-GRIVGMGWTDDEELVVVQ-SD-----GTV 103 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC-CEeEEEEEC--C-CCEEEEEECCCCeEEEEE-cC-----CEE
Confidence 4556666666666544 488888653 444334453 3 789999998875555444 33 999
Q ss_pred EEEeCCCCce-------eEEee-cCCceEEEEEecCccEEEe-CCeEEEEEcCCCe-eeEEEeeccCCcc----------
Q 014007 159 MIWDDHQSRC-------IGELS-FRSEVRSVKLRRDRIIVVL-EQKIFVYNFADLK-LLHQIETIANPKG---------- 218 (432)
Q Consensus 159 ~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~---------- 218 (432)
++||+. |+. +.... ....+....+..+|..+.+ ++.+++.+--... ..+.+........
T Consensus 104 ~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 182 (410)
T PF04841_consen 104 RVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTV 182 (410)
T ss_pred EEEeCC-CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCccccccccccccc
Confidence 999975 333 11111 1222333344456765553 5555544322211 1111111000000
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
...++.+....+++. .++.+.+.+-..- ..+ ...+++..|++||+|++||.-..+|. +.+.+..-.+.+.++.
T Consensus 183 i~~l~~~~~~~i~~~---~g~~i~~i~~~~~--~~i-~~~~~i~~iavSpng~~iAl~t~~g~-l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 183 IPLLSSDRVVEILLA---NGETIYIIDENSF--KQI-DSDGPIIKIAVSPNGKFIALFTDSGN-LWVVSSDFSEKLCEFD 255 (410)
T ss_pred ceEeecCcceEEEEe---cCCEEEEEEcccc--ccc-cCCCCeEEEEECCCCCEEEEEECCCC-EEEEECcccceeEEee
Confidence 012222322222222 2234443222111 011 12468999999999999999999999 9998876666777776
Q ss_pred eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 299 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
.. .......|.|.-+...++.- ...|.+..
T Consensus 256 ~~-~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 256 TD-SKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cC-cCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 54 23566788887665433333 34455554
No 321
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.58 E-value=0.00011 Score=73.18 Aligned_cols=237 Identities=12% Similarity=0.083 Sum_probs=144.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
...+.|.++.|..++.-+..+...| |.+-|.++...... +.-..+|.++.|++|...++-.... +++.+-
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv----g~vd~GI~aaswS~Dee~l~liT~~-----~tll~m 136 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV----GNVDNGISAASWSPDEELLALITGR-----QTLLFM 136 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecCCcEEEEcccccceeee----eeccCceEEEeecCCCcEEEEEeCC-----cEEEEE
Confidence 3447999999999988777777555 77777666554432 2356788999999987665544433 455544
Q ss_pred eCC----C-------------------CceeEEee----------------------cCCceEEEEEecCccEEEe----
Q 014007 162 DDH----Q-------------------SRCIGELS----------------------FRSEVRSVKLRRDRIIVVL---- 192 (432)
Q Consensus 162 d~~----~-------------------~~~~~~~~----------------------~~~~v~~~~~~~~~~~~~~---- 192 (432)
+-. . |+....+. ..+.=..+.|.-||.+++.
T Consensus 137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 310 0 01001111 0111234889999988883
Q ss_pred ---C-CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee----eeeccCCceeEE
Q 014007 193 ---E-QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK----FIMAHDSRIACF 264 (432)
Q Consensus 193 ---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~----~~~~~~~~i~~~ 264 (432)
+ ..|++||-+ |.+-..-......-.+++|-|.|..+..+-....|+.|.+|.-++-+.. .+......+..+
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 5 689999965 5443332223334457899998876655444456778999986663222 123334459999
Q ss_pred EEcCCCCEEEE---EcCCCceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecC
Q 014007 265 ALTQDGQLLAT---SSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 265 ~~sp~~~~l~~---~~~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 334 (432)
+|+.++..|++ ...... |++|-+.+..-. +.+.. +.. .-+.|+|... .|..-..+|...++|..-
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~~---~~~-~~~~W~p~~~~~L~v~~~sG~~~v~~~~~ 366 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQF---SQK-ALLMWDPVTEKTLHVLRESGQRLVRDFAW 366 (1265)
T ss_pred eecCCCCceeeeecccccce-EEEEEecCeEEEEEEEEec---ccc-ccccccCCCceeEEEEecCCcEEEEEEEE
Confidence 99999999988 556666 999987765322 22221 111 1288988432 344444677777766643
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.49 E-value=1.7e-05 Score=73.43 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=111.1
Q ss_pred eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEE
Q 014007 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL 273 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l 273 (432)
.+.+-|.. +...+.+......+..-+|++++..+....--... ..+.++|+.++....+....+.-..-+|+|||+.|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 34444432 44444444444555667889998876554322122 46899999986665555455556677899999987
Q ss_pred EEEc-CCCc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCe--EEEEEecCCCCCCCCCCCCCCC
Q 014007 274 ATSS-TKGT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGT--VHVFNLKVNSGSARSEPRSTSD 348 (432)
Q Consensus 274 ~~~~-~dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~ 348 (432)
+.+. .||. .|++.|+..++..+ +... .+.-..-.|+|||++|+-.+ ..|. |.+++.+....
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----------- 318 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----------- 318 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----------
Confidence 7654 4443 27788887777443 4422 23344778999999988766 4454 55555555441
Q ss_pred CCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec-CCeEEEEEecCCCCCc
Q 014007 349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM-DGSFYRCQFDPVNGGE 416 (432)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~~~~ 416 (432)
..+....+.-..-.|+|||++|+..+. +|...|...++..+..
T Consensus 319 -------------------------~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 319 -------------------------TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred -------------------------eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 112222222236789999999987775 4655555566665554
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=1.5e-05 Score=73.53 Aligned_cols=135 Identities=15% Similarity=0.247 Sum_probs=90.1
Q ss_pred eEEEEEcCCC--eeeEEEeeccCCcceEEEecCCCcEEEEee--cCCCCcE----EEEEccCCceeee----eccCCcee
Q 014007 195 KIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCP--GLQKGQV----RVEHYASKRTKFI----MAHDSRIA 262 (432)
Q Consensus 195 ~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~d~~i----~i~d~~~~~~~~~----~~~~~~i~ 262 (432)
.+.++.+..+ +.+..++...+++ .+.|+-...+.+.... -+.+|.+ .+|+....+++.. ......|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl-~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPL-DVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcE-EEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 3555554433 2333444444443 5677764444433321 1123433 3466655444322 35788899
Q ss_pred EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 263 CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
+++++|+...|+.|+.||. |.+||...+..... + ..-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 264 ~ca~sp~E~kLvlGC~DgS-iiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGS-IILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEecCcccceEEEEecCCe-EEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999 99999766643322 3 3356789999999999999999999999998754
No 324
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.46 E-value=0.00058 Score=64.27 Aligned_cols=244 Identities=12% Similarity=0.102 Sum_probs=136.2
Q ss_pred CeEEEEEcCCCCEEEEEc-C-Cc----EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC------
Q 014007 87 TLLHISFNQDHGCFAAGT-D-HG----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP------ 154 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~-~-~~----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~------ 154 (432)
.+....+||||++||.+- . +. ++++|+++++... ..+. ......+.|.+++..++....+....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-Cccc---ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 344678999999998774 2 22 9999999886542 2222 12222388888855544333221111
Q ss_pred CCeEEEEeCCCCcee--EEee--cCCc-eEEEEEecCccEEEe------C-CeEEEEEcCCC----eeeEEEeeccCCcc
Q 014007 155 LNKVMIWDDHQSRCI--GELS--FRSE-VRSVKLRRDRIIVVL------E-QKIFVYNFADL----KLLHQIETIANPKG 218 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~--~~~~--~~~~-v~~~~~~~~~~~~~~------d-~~i~i~d~~~~----~~~~~~~~~~~~~~ 218 (432)
+..|+.|.+.+.... ..+. .... ...+..++|+++++. + ..+++.++..+ .....+......+.
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~ 280 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVE 280 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-E
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceE
Confidence 367999998877433 3444 2233 668889999998872 4 57899998774 23344433333332
Q ss_pred eEEEecCCCcEEEEee-cCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEc-CCCc-eEEEEECCCC
Q 014007 219 LCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSS-TKGT-LVRIFNTLDG 291 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~-~i~vwd~~~~ 291 (432)
... ...+..+++.+. +..++.|...++.... ...+..+...+.-..+...+.+|+... .++. .|+++|+..+
T Consensus 281 ~~v-~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~ 359 (414)
T PF02897_consen 281 YYV-DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG 359 (414)
T ss_dssp EEE-EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T
T ss_pred EEE-EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC
Confidence 222 222566666542 2345777777877743 225556665433333334444555443 3332 2889998746
Q ss_pred ceEEEEEeCCCcCceEEEEECCCCCEEE--EEe--CCCeEEEEEecCCC
Q 014007 292 TLLQEVRRGADRAEIYSLAFSSNAQWLA--VSS--DKGTVHVFNLKVNS 336 (432)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~--~~~--~dg~i~iwd~~~~~ 336 (432)
.....+... ..+.|..+...+++..+. ..+ .-++++.||+.+++
T Consensus 360 ~~~~~~~~p-~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 360 KESREIPLP-EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEESS-SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred cEEeeecCC-cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 666666643 235567777666665443 222 35688999998887
No 325
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00071 Score=64.85 Aligned_cols=228 Identities=12% Similarity=0.170 Sum_probs=121.9
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEeecccC---cceeEE--EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERG---GGIGVV--EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG 170 (432)
Q Consensus 96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~--~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~ 170 (432)
++++++...++.+.-+|..+++.......... ....+. .+....++..++ +..+ +.|+-+|.++|+.+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v-~~~~-----g~v~AlD~~TG~~~W 134 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF-GTFD-----GRLVALDAETGKQVW 134 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE-ecCC-----CeEEEEECCCCCEee
Confidence 34433433355577778777776654443211 000111 111222133333 3345 899999999999998
Q ss_pred EeecCCc------eE-EEEEecCccEEE-e----------CCeEEEEEcCCCeeeEEEeeccCC----------------
Q 014007 171 ELSFRSE------VR-SVKLRRDRIIVV-L----------EQKIFVYNFADLKLLHQIETIANP---------------- 216 (432)
Q Consensus 171 ~~~~~~~------v~-~~~~~~~~~~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~---------------- 216 (432)
.+..... +. ...+. ++.+++ . ++.++.+|..+|+.+..++.....
T Consensus 135 ~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 213 (488)
T cd00216 135 KFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGP 213 (488)
T ss_pred eecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecC
Confidence 8873332 11 12222 244433 2 467899999999988776542110
Q ss_pred ----c-ceEEEecCCCcEEEEeecC---------------CCCcEEEEEccCCceeeee---ccCCc---e-eEEEEc--
Q 014007 217 ----K-GLCAVSQGVGSLVLVCPGL---------------QKGQVRVEHYASKRTKFIM---AHDSR---I-ACFALT-- 267 (432)
Q Consensus 217 ----~-~~~~~~~~~~~~~~~~~g~---------------~d~~i~i~d~~~~~~~~~~---~~~~~---i-~~~~~s-- 267 (432)
+ ...++.+.+..+++.+... .++.|.-+|..+++..-.. .|... . ....+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence 0 1233444455555543111 1236888888886654321 12110 0 000111
Q ss_pred --CCCC---EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE------------------eCC
Q 014007 268 --QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS------------------SDK 324 (432)
Q Consensus 268 --p~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~------------------~~d 324 (432)
-+|. .++.++.+|. +...|.++|+.+...... ...++.+| + .+..+ ..+
T Consensus 294 ~~~~g~~~~~V~~g~~~G~-l~ald~~tG~~~W~~~~~-----~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~ 365 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGF-FYVLDRTTGKLISARPEV-----EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGK 365 (488)
T ss_pred cccCCCeeEEEEEECCCce-EEEEECCCCcEeeEeEee-----ccccccCC-c-eEEEccccccccCcccccCCCCCCCc
Confidence 1333 6788889999 999999999998876532 12234444 2 22222 235
Q ss_pred CeEEEEEecCCCCC
Q 014007 325 GTVHVFNLKVNSGS 338 (432)
Q Consensus 325 g~i~iwd~~~~~~~ 338 (432)
|.|.-.|+.+++.+
T Consensus 366 G~l~AlD~~tG~~~ 379 (488)
T cd00216 366 GGLAALDPKTGKVV 379 (488)
T ss_pred eEEEEEeCCCCcEe
Confidence 77888888888743
No 326
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.43 E-value=0.00053 Score=62.04 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=107.3
Q ss_pred CeEEEEeCCCCceeEEee--cCCceEEEEEec---C----ccEEEe------------C-CeEEEEEcCCC----eeeEE
Q 014007 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRR---D----RIIVVL------------E-QKIFVYNFADL----KLLHQ 209 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~---~----~~~~~~------------d-~~i~i~d~~~~----~~~~~ 209 (432)
..|++.|..+.+.+..+. ....+.+++.-. + ..+++. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 578999988888887776 455566655332 2 345541 2 88999999884 22222
Q ss_pred E--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCC--ceeEEEEcCCCCEEEEEcCCCceEE
Q 014007 210 I--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS--RIACFALTQDGQLLATSSTKGTLVR 284 (432)
Q Consensus 210 ~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~~i~ 284 (432)
+ ....+++.+++-- ++.+ +++. .+.|.+|++.... +.....+.. .+.++.. .++++++|..... |.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~l-v~~~---g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~s-v~ 152 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRL-VVAV---GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKS-VS 152 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEE-EEEE---TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSS-EE
T ss_pred EEEEeecCcceEhhhh--CCEE-EEee---cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccC-EE
Confidence 2 2235555554444 4444 4443 4899999999877 554443433 4555544 4668999988777 88
Q ss_pred EEECCC-CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 285 IFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 285 vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
++.... .+.+..+........++++.|-++++.++.+..+|.+.++....
T Consensus 153 ~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 775443 44344554433456789999986777999999999999999874
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=9.7e-06 Score=76.89 Aligned_cols=139 Identities=16% Similarity=0.180 Sum_probs=102.5
Q ss_pred cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
|+.+|.|++++..... .....|... .-+|.++++|+.||+ |.|..+.+.+....+. ...++.+++++|+
T Consensus 55 GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGk-v~I~sl~~~~~~~~~d---f~rpiksial~Pd 123 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGK-VVIGSLFTDDEITQYD---FKRPIKSIALHPD 123 (846)
T ss_pred ccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCc-EEEeeccCCccceeEe---cCCcceeEEeccc
Confidence 5689999999988766 555555544 568999999999999 9999999888887777 3478999999998
Q ss_pred -----CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007 315 -----AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG 389 (432)
Q Consensus 315 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 389 (432)
.+.+++|+..| +.++.-+=.... .-..+...+|.|.++.|
T Consensus 124 ~~~~~sk~fv~GG~ag-lvL~er~wlgnk---------------------------------~~v~l~~~eG~I~~i~W- 168 (846)
T KOG2066|consen 124 FSRQQSKQFVSGGMAG-LVLSERNWLGNK---------------------------------DSVVLSEGEGPIHSIKW- 168 (846)
T ss_pred hhhhhhhheeecCcce-EEEehhhhhcCc---------------------------------cceeeecCccceEEEEe-
Confidence 56888999888 777754322210 01124445688999999
Q ss_pred cCCCEEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007 390 HQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEYN 423 (432)
Q Consensus 390 ~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 423 (432)
.|+++|-++.+| |++|+.. .+..+..+++-
T Consensus 169 -~g~lIAWand~G-v~vyd~~--~~~~l~~i~~p 198 (846)
T KOG2066|consen 169 -RGNLIAWANDDG-VKVYDTP--TRQRLTNIPPP 198 (846)
T ss_pred -cCcEEEEecCCC-cEEEecc--ccceeeccCCC
Confidence 477999888887 7887764 34555555543
No 328
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=2.4e-07 Score=88.26 Aligned_cols=190 Identities=8% Similarity=0.046 Sum_probs=140.9
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe-----CCeEEEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL-----EQKIFVYN 200 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~-----d~~i~i~d 200 (432)
.+....++++|+.+..+++.|.-. |.|++|++.+|.....+. |...|+-+.-+.||....+ .--..+|+
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~-----Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHA-----GEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred ccccceeeEEeecCCceEEeeecc-----ceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 567888999999999999998888 999999999999888888 9999999999999877663 22567899
Q ss_pred cCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eee-e---eccCCceeEEEEcCCCCEEE
Q 014007 201 FAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKF-I---MAHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 201 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~-~---~~~~~~i~~~~~sp~~~~l~ 274 (432)
+.. +...+.+.. -.++.|+......++.+ ......+||+.+.. +.+ + .+....-++..|+|+..+++
T Consensus 1174 ~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt---~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNSLQFRALGT---EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred cccccCccccccc----cceeehhhhHHHHHhcc---cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 764 555666543 23677776655445544 44678899999843 222 2 12233347889999988765
Q ss_pred EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 342 (432)
+||. +||++..+.++.|... ..-..-.|+|.|..++.-+ .|||+++.+.+...+
T Consensus 1247 ---ndGv---LWDvR~~~aIh~FD~f---t~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1247 ---NDGV---LWDVRIPEAIHRFDQF---TDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ---eCce---eeeeccHHHHhhhhhh---eecccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 4664 9999998888887642 1223447999999988876 499999998777655
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.39 E-value=0.00082 Score=55.76 Aligned_cols=127 Identities=10% Similarity=0.007 Sum_probs=79.4
Q ss_pred CCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 97 HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 97 ~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
..+++.|+-.+ +.--|..++.......+. .......+. - +.+++-|... |.+++.+.++|.....+.-.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-v--gdfVV~GCy~-----g~lYfl~~~tGs~~w~f~~~ 92 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-V--GDFVVLGCYS-----GGLYFLCVKTGSQIWNFVIL 92 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-E--CCEEEEEEcc-----CcEEEEEecchhheeeeeeh
Confidence 34666666433 666777777777665553 332222332 2 2335556666 99999999999888888744
Q ss_pred CceEE-EEEecCccEEE--e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 176 SEVRS-VKLRRDRIIVV--L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 176 ~~v~~-~~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
+.|.+ ....+++.++. + |++.+..|.++..++...+........-++.+-...++++.
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 44443 23455666555 3 89999999999888777655444334455666445555554
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.39 E-value=3.9e-05 Score=71.34 Aligned_cols=220 Identities=11% Similarity=0.083 Sum_probs=116.7
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCe
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLK 205 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~ 205 (432)
.......+.++|++.+++.++. |...|+.....+.. ..+......|...+.+++. +++|.|+.--+.+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~------geY~iyt~~~~r~k----~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGD------GEYEIYTALAWRNK----AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEET------TEEEEEETTTTEEE----EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEEcC------CEEEEEEccCCccc----ccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 3344678899999988887554 78888873332221 2345567889998888885 5689996422223
Q ss_pred eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 206 LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
....++.. ...-.+.. |.- +.+. .++.|.+||+.++.+..-.... .|..+.|+++|.+++..+.+. +.|
T Consensus 101 ~~k~i~~~---~~~~~If~-G~L-L~~~---~~~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~--i~i 169 (443)
T PF04053_consen 101 VVKSIKLP---FSVEKIFG-GNL-LGVK---SSDFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDS--IYI 169 (443)
T ss_dssp TT-----S---S-EEEEE--SSS-EEEE---ETTEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-S--EEE
T ss_pred cceEEcCC---cccceEEc-CcE-EEEE---CCCCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCe--EEE
Confidence 22333322 11222222 443 3332 2457999999986544333333 389999999999999998775 777
Q ss_pred EECCCC-----------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007 286 FNTLDG-----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (432)
Q Consensus 286 wd~~~~-----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
++.... ..+..+.. ....|.+.+|..| .++-.+.. .|+. +-.++
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E--~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge------------------ 224 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHE--ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE------------------ 224 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEE--E-S--SEEEEETT--EEEEE-TT-EEEE--EETTE------------------
T ss_pred EEecchhcccccccCchhceEEEEE--ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC------------------
Confidence 764322 02333331 1367889999766 34333333 6665 55554
Q ss_pred CceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
...+..-+.++.-+...+..+.|.....|+.|..+.+++
T Consensus 225 ------------------~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 225 ------------------TGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ------------------EEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ------------------cceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 223333345677888888888999999999999999876
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.38 E-value=0.0002 Score=67.93 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=137.3
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEE-------------------EecCccEEE----eCC
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVK-------------------LRRDRIIVV----LEQ 194 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~-------------------~~~~~~~~~----~d~ 194 (432)
+|+++...+.. ...|...++...++.+.++ ....+.+++ +.+||+.+. ..+
T Consensus 140 dGr~~findk~----n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~ 215 (635)
T PRK02888 140 DGRYLFINDKA----NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRS 215 (635)
T ss_pred ceeEEEEecCC----CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeE
Confidence 56666655432 1566666666655444333 223333333 334555443 145
Q ss_pred eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEE
Q 014007 195 KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL 273 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l 273 (432)
.+.+.|..+.+...++.....+ ..+.++++++.+++.+..++. ..+...+.......... .-..+ -++.++|++.
T Consensus 216 ~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf-ni~~i--ea~vkdGK~~ 291 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF-NIARI--EEAVKAGKFK 291 (635)
T ss_pred EEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE-chHHH--HHhhhCCCEE
Confidence 7888888887777777654433 568999999887765422222 22332222211100000 00001 1334578877
Q ss_pred EEEcCCCceEEEEECCC-----CceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCC
Q 014007 274 ATSSTKGTLVRIFNTLD-----GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTS 347 (432)
Q Consensus 274 ~~~~~dg~~i~vwd~~~-----~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (432)
..+ ++. |.+.|.++ .+.+..+.. ......+.++|||+++++++ .+++|.|+|+.+.+..-..
T Consensus 292 ~V~--gn~-V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~------ 359 (635)
T PRK02888 292 TIG--GSK-VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDG------ 359 (635)
T ss_pred EEC--CCE-EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhc------
Confidence 663 566 99999988 466666663 36788999999999988776 6899999999987632100
Q ss_pred CCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 348 DPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+.+ +.--.++.....+ -...+|.++|+...+.--|..|-.|+++.
T Consensus 360 -------~~~~----------~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 -------KIKP----------RDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred -------cCCc----------cceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0000 0000122222222 34688999999888888899999999876
No 332
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.38 E-value=0.00018 Score=67.67 Aligned_cols=203 Identities=9% Similarity=0.070 Sum_probs=121.3
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
......++..|.--+++..+++++.|++.| +.+|+...+.... .... +....+..+..+++..++|.|+.. |
T Consensus 26 ~~~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~-~~~~~~~~~~vs~~e~lvAagt~~-----g 98 (726)
T KOG3621|consen 26 LLQPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNE-GATGITCVRSVSSVEYLVAAGTAS-----G 98 (726)
T ss_pred hhccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhc-cccc-CccceEEEEEecchhHhhhhhcCC-----c
Confidence 344566777888888888999999999777 9999977665442 2222 345555666777877788888777 9
Q ss_pred eEEEEeCCCCce-----eEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe----eeEEEeeccCCcceEEE
Q 014007 157 KVMIWDDHQSRC-----IGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK----LLHQIETIANPKGLCAV 222 (432)
Q Consensus 157 ~v~iwd~~~~~~-----~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~ 222 (432)
.|.++-+..+.. +.... |+..|++++|++++..+++ .|+|..-.+.... ..+.+-.... .++.+
T Consensus 99 ~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds--~IVQl 176 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS--EIVQL 176 (726)
T ss_pred eEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCc--ceEEe
Confidence 999998776432 11122 6788999999999999985 5788877776511 1111211122 24555
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--cCCc-eeEEEEcCC----CCEEEEEcCCCceEEEEECC-CCceE
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSR-IACFALTQD----GQLLATSSTKGTLVRIFNTL-DGTLL 294 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~-i~~~~~sp~----~~~l~~~~~dg~~i~vwd~~-~~~~~ 294 (432)
+.-...+++++ --...+++.+.+.++.+-. .++. -...+|-|. .+-.+.++.-| .|+|... .|+.+
T Consensus 177 D~~q~~LLVSt----l~r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~V~ 250 (726)
T KOG3621|consen 177 DYLQSYLLVST----LTRCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGEVI 250 (726)
T ss_pred ecccceehHhh----hhhhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC--CceEEeecceeEE
Confidence 55544444432 2334456665544433321 1221 123344442 33455666666 5888654 34443
Q ss_pred E
Q 014007 295 Q 295 (432)
Q Consensus 295 ~ 295 (432)
+
T Consensus 251 ~ 251 (726)
T KOG3621|consen 251 K 251 (726)
T ss_pred E
Confidence 3
No 333
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00075 Score=59.67 Aligned_cols=207 Identities=13% Similarity=0.069 Sum_probs=124.9
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEE-EEecCccEEEeCCeEEEEEcCCCeeeEEEeec-----cCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSV-KLRRDRIIVVLEQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 229 (432)
+.|.-|+..+++ ...+...+.+.++ .+...+.+++.+..+++++.+++..+..+... ....+...+.|+|..
T Consensus 47 ~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~- 124 (307)
T COG3386 47 GRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRI- 124 (307)
T ss_pred CeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCE-
Confidence 788888876554 3344444444444 45566777778888999998766553333211 123346788888753
Q ss_pred EEEeec---------CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC--Cc---eEE
Q 014007 230 VLVCPG---------LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD--GT---LLQ 295 (432)
Q Consensus 230 ~~~~~g---------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~--~~---~~~ 295 (432)
++...+ ..-|.|+.+|......+.+..+-..-+.|+||||++.|+.+......|.-|++.. +. ...
T Consensus 125 wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~ 204 (307)
T COG3386 125 WFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG 204 (307)
T ss_pred EEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce
Confidence 344333 1124444444433445555555666789999999988877766533277777652 21 111
Q ss_pred EEEeCCCcCceEEEEECCCCCEEEEEeCCC-eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 296 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
.+......+..-.++...+|.+.+++..+| .|.+|+.+ ++. +.
T Consensus 205 ~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l-----------------------------------~~ 248 (307)
T COG3386 205 FVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKL-----------------------------------LG 248 (307)
T ss_pred EEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcE-----------------------------------EE
Confidence 122112345667788888888876554444 89999988 552 34
Q ss_pred EEEecCCCceEEEEcc-CCCEEEEEec
Q 014007 375 QFRLVEGSPYIVAFGH-QKNTVVILGM 400 (432)
Q Consensus 375 ~~~~~~~~v~~~~~s~-~~~~l~~~~~ 400 (432)
.++.+...+++++|-- +.+.|++.+.
T Consensus 249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 249 EIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEECCCCCCccceEeCCCcCEEEEEec
Confidence 5666666788888854 5565554444
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=7.2e-05 Score=69.12 Aligned_cols=116 Identities=13% Similarity=0.126 Sum_probs=79.0
Q ss_pred CceeEEEEcC-CCCEEEE----EcCCCc---eEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007 259 SRIACFALTQ-DGQLLAT----SSTKGT---LVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328 (432)
Q Consensus 259 ~~i~~~~~sp-~~~~l~~----~~~dg~---~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 328 (432)
....++.|+- +.+.+.+ .+.+|. .-.+|++...+. +..... ..+..+.+++++|+...|+.|+.||+|.
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEE
Confidence 3445666665 3333333 222332 135677655432 222222 2567899999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
+||...+.. ......=..+.++|+|+|..+++|+..|.+.+||
T Consensus 285 LyD~~~~~t-------------------------------------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 285 LYDTTRGVT-------------------------------------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred EEEcCCCee-------------------------------------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 999987641 1111222367899999999999999999999999
Q ss_pred ecCC
Q 014007 409 FDPV 412 (432)
Q Consensus 409 ~~~~ 412 (432)
+...
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 8663
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.34 E-value=0.0002 Score=65.64 Aligned_cols=176 Identities=12% Similarity=0.100 Sum_probs=102.2
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeec-----------------cCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETI-----------------ANP 216 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~-----------------~~~ 216 (432)
+.+.+||+.+++..........+....|+|+|..++ .++.|++++..+++..+.-... -+.
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 789999999876554444567889999999999988 3999999998777443321111 112
Q ss_pred cceEEEecCCCcEEEEeecCCCCc-----------------------------------EEEEEccCCceeeee------
Q 014007 217 KGLCAVSQGVGSLVLVCPGLQKGQ-----------------------------------VRVEHYASKRTKFIM------ 255 (432)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~-----------------------------------i~i~d~~~~~~~~~~------ 255 (432)
-..+.|+||++.++++.. .+.. +.++|+.+++...+.
T Consensus 103 ~~~~~WSpd~~~la~~~~--d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~ 180 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRF--DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLN 180 (353)
T ss_dssp SBSEEE-TTSSEEEEEEE--E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHH
T ss_pred ccceEECCCCCEEEEEEE--CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccC
Confidence 346889999988765542 1222 223444443332221
Q ss_pred ccCCceeEEEEcCCCCEEEEE--cCCCc--eEEEEECCCCceEEEEEeCCCcCce---EEEEEC-CCCCE-EEEEeCCCe
Q 014007 256 AHDSRIACFALTQDGQLLATS--STKGT--LVRIFNTLDGTLLQEVRRGADRAEI---YSLAFS-SNAQW-LAVSSDKGT 326 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~--~~dg~--~i~vwd~~~~~~~~~~~~~~~~~~i---~~~~~s-~~~~~-l~~~~~dg~ 326 (432)
.-...+..+.|.++++.|+.. +.+.. .+.+.|..++++...+... ....| ..+.|. +++.. |.....+|-
T Consensus 181 ~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 181 PQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp TSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 234467889999999844433 33322 2677788887665444432 22322 345554 55554 444447776
Q ss_pred EEEEEecC
Q 014007 327 VHVFNLKV 334 (432)
Q Consensus 327 i~iwd~~~ 334 (432)
-+||-+..
T Consensus 260 ~hly~~~~ 267 (353)
T PF00930_consen 260 RHLYLYDL 267 (353)
T ss_dssp EEEEEEET
T ss_pred cEEEEEcc
Confidence 55555544
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.34 E-value=0.0007 Score=57.74 Aligned_cols=196 Identities=9% Similarity=0.087 Sum_probs=114.8
Q ss_pred eecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCe
Q 014007 122 RDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQK 195 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~ 195 (432)
+.+. +-...+..++|+++ +..++..+.. +.|..++. +|+.++.+. ..+..-+|++..++.+++. ++.
T Consensus 15 ~~l~-g~~~e~SGLTy~pd~~tLfaV~d~~-----~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~ 87 (248)
T PF06977_consen 15 KPLP-GILDELSGLTYNPDTGTLFAVQDEP-----GEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQR 87 (248)
T ss_dssp EE-T-T--S-EEEEEEETTTTEEEEEETTT-----TEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTE
T ss_pred eECC-CccCCccccEEcCCCCeEEEEECCC-----CEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCc
Confidence 4454 44456899999986 5566666666 89999995 588888887 3467899999999998885 578
Q ss_pred EEEEEcCCCe------eeEEEe-----eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--C--ceee-------
Q 014007 196 IFVYNFADLK------LLHQIE-----TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--K--RTKF------- 253 (432)
Q Consensus 196 i~i~d~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~--~~~~------- 253 (432)
+.++++.... ....+. .....+..++|++.++.++++. +..-..+|.++. . ....
T Consensus 88 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 88 LYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeeccccccc
Confidence 9998884321 112222 1223467899999999988775 455556666654 1 1111
Q ss_pred -eeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCC--C-----cCceEEEEECCCCCEEEEEeCC
Q 014007 254 -IMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--D-----RAEIYSLAFSSNAQWLAVSSDK 324 (432)
Q Consensus 254 -~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~--~-----~~~i~~~~~s~~~~~l~~~~~d 324 (432)
.......+.+++++|. |++++.+..... |..+| .+|+.+..+.... | -...-.|+|.++|++. ..++-
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEp 241 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRL-LLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEP 241 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTE-EEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCe-EEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCC
Confidence 1123446789999995 556666666776 99999 7888877666422 1 0247789999999655 45577
Q ss_pred CeEEEE
Q 014007 325 GTVHVF 330 (432)
Q Consensus 325 g~i~iw 330 (432)
+..++|
T Consensus 242 Nlfy~f 247 (248)
T PF06977_consen 242 NLFYRF 247 (248)
T ss_dssp TEEEEE
T ss_pred ceEEEe
Confidence 777665
No 337
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.34 E-value=0.0017 Score=57.07 Aligned_cols=262 Identities=16% Similarity=0.162 Sum_probs=144.0
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC-------CCeEEEEeCCCCceeEEeecCC---
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP-------LNKVMIWDDHQSRCIGELSFRS--- 176 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~-------~~~v~iwd~~~~~~~~~~~~~~--- 176 (432)
.+.++|.+.++.. ..+. ....-.+..++++..+.+...- |+ .-.|.+||..+-....++.-+.
T Consensus 18 rv~viD~d~~k~l--Gmi~---~g~~~~~~~spdgk~~y~a~T~--~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADSGKLL--GMID---TGFLGNVALSPDGKTIYVAETF--YSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEETTTTEEE--EEEE---EESSEEEEE-TTSSEEEEEEEE--EEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred eEEEEECCCCcEE--EEee---cccCCceeECCCCCEEEEEEEE--EeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 4788887776644 3332 1222234456776666543210 11 0359999999998888776221
Q ss_pred -----ceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC-CcEEEEeecCCCCcEEEEE
Q 014007 177 -----EVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV-GSLVLVCPGLQKGQVRVEH 245 (432)
Q Consensus 177 -----~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~d~~i~i~d 245 (432)
....++++.|++++.. ...|.|.|+..++.+.++... + |.-+-|.+ +.+...| .||.+.-..
T Consensus 91 ~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC---~DGsl~~v~ 163 (342)
T PF06433_consen 91 AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLC---GDGSLLTVT 163 (342)
T ss_dssp --BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEE---TTSCEEEEE
T ss_pred heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEe---cCCceEEEE
Confidence 1234678889988874 568999999999988887642 2 33333443 3444444 589998888
Q ss_pred ccC-Cceee-----eeccCCce-eEEEEcCCCCEEEEEcCCCceEEEEECCCCceE--EEEEeCC--------CcCceEE
Q 014007 246 YAS-KRTKF-----IMAHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGA--------DRAEIYS 308 (432)
Q Consensus 246 ~~~-~~~~~-----~~~~~~~i-~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~~~~~--------~~~~i~~ 308 (432)
++. ++... +.....++ ..-++...+..++--+.+|. |+--|+...... ..+.... .++.-.-
T Consensus 164 Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~-v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~ 242 (342)
T PF06433_consen 164 LDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN-VYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQL 242 (342)
T ss_dssp ETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE-EEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-
T ss_pred ECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE-EEEEeccCCcccccCcccccCccccccCcCCcceee
Confidence 874 33221 11112222 23344445555666788888 888887665432 2222100 0123344
Q ss_pred EEECCCCCEEEEEeC--------CC--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe
Q 014007 309 LAFSSNAQWLAVSSD--------KG--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL 378 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (432)
+++++....|.+.-. |+ .|.+||+.+++. ++.+..
T Consensus 243 ~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr-----------------------------------v~Ri~l 287 (342)
T PF06433_consen 243 IAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR-----------------------------------VARIPL 287 (342)
T ss_dssp EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE-----------------------------------EEEEEE
T ss_pred eeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeE-----------------------------------EEEEeC
Confidence 667665544443221 11 356666666652 333332
Q ss_pred cCCCceEEEEccCCC-EEEEE-ecCCeEEEEEecCCCCCcceEee
Q 014007 379 VEGSPYIVAFGHQKN-TVVIL-GMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 379 ~~~~v~~~~~s~~~~-~l~~~-~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
. ..+.+++.+.|.+ +|++. ..+|.+.+|+ ..+|+.+..++
T Consensus 288 ~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D--~~tGk~~~~~~ 329 (342)
T PF06433_consen 288 E-HPIDSIAVSQDDKPLLYALSAGDGTLDVYD--AATGKLVRSIE 329 (342)
T ss_dssp E-EEESEEEEESSSS-EEEEEETTTTEEEEEE--TTT--EEEEE-
T ss_pred C-CccceEEEccCCCcEEEEEcCCCCeEEEEe--CcCCcEEeehh
Confidence 1 2477899998766 56554 4589999966 46777776665
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00017 Score=69.25 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=128.7
Q ss_pred CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCC
Q 014007 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
.|+ +|++.+..++.|+ ++.|.+++- .- .....++ .+...+....+.-+. .++++-+.|..-.+-.|++|+++
T Consensus 27 ~is--c~~s~~~~vvigt~~G~V~~Ln~--s~-~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le 100 (933)
T KOG2114|consen 27 AIS--CCSSSTGSVVIGTADGRVVILNS--SF-QLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE 100 (933)
T ss_pred cee--EEcCCCceEEEeeccccEEEecc--cc-eeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccc
Confidence 554 4678888899998 444766652 21 2223343 344445555555444 66666655522222379999986
Q ss_pred CC------cee---EEee-----cCCceEEEEEecCccEEE---eCCeEEEEEcC---C-CeeeEEEeeccCCcceEEEe
Q 014007 165 QS------RCI---GELS-----FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA---D-LKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 165 ~~------~~~---~~~~-----~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~---~-~~~~~~~~~~~~~~~~~~~~ 223 (432)
.- .++ +.+. ...++.+++.+.+-..++ .+|.|..+.=. + +...........+|+.+++.
T Consensus 101 k~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 101 KVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred ccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 43 233 2222 246788899999877766 38998888521 1 22222233456789999999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
.++...++++ .-..|.+|.+.++. ...+..|...+.|..|++....+++++... |.+||....+.-..|.
T Consensus 181 ~d~~s~lFv~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 181 SDGKSVLFVA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFE 252 (933)
T ss_pred cCCceeEEEE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeec
Confidence 9998854554 34689999988755 455778889999999998665466666554 8999977655555555
No 339
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.32 E-value=0.00014 Score=71.39 Aligned_cols=132 Identities=14% Similarity=0.245 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC-------CCcEEEEeecCCCCcEEEEEccCCc--eeeee----ccCC
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG-------VGSLVLVCPGLQKGQVRVEHYASKR--TKFIM----AHDS 259 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~----~~~~ 259 (432)
.+.|+-.|++.|+.+..+..+... ....+.|+ +...+++. .+..+..||.+-.. +.... ....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl---s~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL---SDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE---CCCceEEeccCCCCCceeeccccccccCC
Confidence 468999999999999999887653 25566664 23344443 67899999998732 21111 2345
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
...|++-+.+| +||+|+.+|. ||+|| +.|+.-++.-.+ ...+|..|..+.||++|++.+ +..|.+++..
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~-IRLyd-~~g~~AKT~lp~-lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGD-IRLYD-RLGKRAKTALPG-LGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCc-EEeec-ccchhhhhcCCC-CCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67888888787 6899999999 99999 455433333222 347999999999999998776 5668888875
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.31 E-value=0.0014 Score=59.38 Aligned_cols=217 Identities=13% Similarity=0.211 Sum_probs=123.6
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEE---eeeC----CeEEEecCCC-C-CC--CCC-CeEEEEeCCCC-----c--
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEM---LFRC----NILALVGGGP-D-PQ--YPL-NKVMIWDDHQS-----R-- 167 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~---~~~~----~~~~~~s~~~-d-~~--~~~-~~v~iwd~~~~-----~-- 167 (432)
.|+|.|-.+.+......+. ....+.++ .+.. ...+++.|.. . +. ... |.|.++++... +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred EEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 3788887777766555665 33444433 3332 1344443321 1 11 112 89999999884 2
Q ss_pred eeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 168 CIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 168 ~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
.+......++|++++--.+..+++.++.|++|++...+.+........+.....+...++.+++ |+....+.++.++
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~v---gD~~~sv~~~~~~ 157 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILV---GDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEE---EESSSSEEEEEEE
T ss_pred EEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEE---EEcccCEEEEEEE
Confidence 2233347899999987744433336999999999887723333333444456667666665443 3356777777554
Q ss_pred C--Cceeeee--ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC-------Cc-eEE-EEEeCCCcCceEEE---EE
Q 014007 248 S--KRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-------GT-LLQ-EVRRGADRAEIYSL---AF 311 (432)
Q Consensus 248 ~--~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-------~~-~~~-~~~~~~~~~~i~~~---~~ 311 (432)
. ..+..+. .....++++.|-++++.++.+..+|. |.++.... +. .+. ...-+ ....|+++ ++
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn-l~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l 235 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN-LFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL 235 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE-EEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe-EEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence 4 3333332 23556889989877778999999999 99987752 22 222 22222 33567777 55
Q ss_pred CCC--CC------EEEEEeCCCeEEEE
Q 014007 312 SSN--AQ------WLAVSSDKGTVHVF 330 (432)
Q Consensus 312 s~~--~~------~l~~~~~dg~i~iw 330 (432)
.|. +. .++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 552 22 47778889988844
No 341
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.30 E-value=2e-05 Score=75.83 Aligned_cols=175 Identities=17% Similarity=0.280 Sum_probs=123.0
Q ss_pred EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCC
Q 014007 99 CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS 176 (432)
Q Consensus 99 ~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~ 176 (432)
.++.|+ .+.+..+|+.+.+......+. ...+.-|. .++..+.+|... |+|.+-|..+.+.+.++. |.+
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR--~Nnr~lf~G~t~-----G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMR--YNNRNLFCGDTR-----GTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeecc---CCceEEEE--ecCcEEEeeccc-----ceEEeecCCcCceeeeeecccc
Confidence 344444 444677787766655333332 22233333 456777788877 999999999999999999 999
Q ss_pred ceEEEEEecCccEEE----------eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE-
Q 014007 177 EVRSVKLRRDRIIVV----------LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH- 245 (432)
Q Consensus 177 ~v~~~~~~~~~~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d- 245 (432)
.|.++....+-...+ .|.-|+|||++..+.+.-+..+.++ ..+.|.|.-...++++ +..|...+.|
T Consensus 219 siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~--S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 219 SISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVT--SQSGQFQFVDT 295 (1118)
T ss_pred ceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEE--ecccceeeccc
Confidence 998776644322211 3778999999998877777665555 4678888766555554 2568889888
Q ss_pred --ccCCce--eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 246 --YASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 246 --~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
+.+... ..+......+..+.++++|+.|+.|..+|. |.+|-
T Consensus 296 ~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWA 340 (1118)
T ss_pred cccCCCccceeEEccCCCcceeEEecCCCceEEEecccCc-Eeeec
Confidence 433323 334445566999999999999999999999 99996
No 342
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.3e-05 Score=65.46 Aligned_cols=243 Identities=10% Similarity=0.082 Sum_probs=130.0
Q ss_pred cccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYP 154 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~ 154 (432)
.+.+..|...|..++|||..+ +|..++ ++.|+|.|+++.... ..+. -...+++++|+-+ ..++.+|..+
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--ssy~--a~~~~wSC~wDlde~h~IYaGl~n---- 257 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--SSYI--AYNQIWSCCWDLDERHVIYAGLQN---- 257 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--ehee--ccCCceeeeeccCCcceeEEeccC----
Confidence 457788899999999999887 666666 667999999887665 3333 3378899999765 4566777777
Q ss_pred CCeEEEEeCCCCc-eeEEee---cCCceEEEEEe------cCccEEE-eCCeEEEEEcCC--CeeeEEEeec-cCCcceE
Q 014007 155 LNKVMIWDDHQSR-CIGELS---FRSEVRSVKLR------RDRIIVV-LEQKIFVYNFAD--LKLLHQIETI-ANPKGLC 220 (432)
Q Consensus 155 ~~~v~iwd~~~~~-~~~~~~---~~~~v~~~~~~------~~~~~~~-~d~~i~i~d~~~--~~~~~~~~~~-~~~~~~~ 220 (432)
|.|.+||++..+ .+..+. ...+|..++.- +.+-+++ .--.+..|++.- +.....++.. .+....+
T Consensus 258 -G~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cism 336 (463)
T KOG1645|consen 258 -GMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISM 336 (463)
T ss_pred -ceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeee
Confidence 999999987653 222222 23344443322 2222332 333344555432 1111112111 1222223
Q ss_pred EEecCCCcEEEEeecCC-C---CcE--EEEEccCCcee-eeecc-CCc------eeEEEEcCCCCEEEE-EcCCCceEEE
Q 014007 221 AVSQGVGSLVLVCPGLQ-K---GQV--RVEHYASKRTK-FIMAH-DSR------IACFALTQDGQLLAT-SSTKGTLVRI 285 (432)
Q Consensus 221 ~~~~~~~~~~~~~~g~~-d---~~i--~i~d~~~~~~~-~~~~~-~~~------i~~~~~sp~~~~l~~-~~~dg~~i~v 285 (432)
...+..+++++.+-... - ..+ ++-+.+...+. .-..+ ... -..+.-.++.++++. +...+. +.+
T Consensus 337 qy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~-lil 415 (463)
T KOG1645|consen 337 QYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE-LIL 415 (463)
T ss_pred eecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce-eEE
Confidence 33333344443321100 0 000 00011111110 00111 000 011222345555554 444455 999
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECC-C-CCEEEEEeCCCeEEEEEecC
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSS-N-AQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~-~-~~~l~~~~~dg~i~iwd~~~ 334 (432)
||..+++.++++. ...+|.+++... + +.+|+.-. |..++||..+.
T Consensus 416 ~D~~s~evvQ~l~---~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 416 QDPHSFEVVQTLA---LSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred eccchhheeeecc---cCcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 9999999999998 447888887654 2 34666554 66789987543
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.0022 Score=59.34 Aligned_cols=240 Identities=14% Similarity=0.109 Sum_probs=159.7
Q ss_pred CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeC
Q 014007 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~ 163 (432)
....+.+.+++..+.+.. .+.+...+.. ......... .....-..++.++.+. ..+....+ +.|.+.|.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~--~n~~~~~~~-~g~~~p~~i~v~~~~~~vyv~~~~~-----~~v~vid~ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT--SNTVTQSLS-VGGVYPAGVAVNPAGNKVYVTTGDS-----NTVSVIDT 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc--cceeeeecc-CCCccccceeeCCCCCeEEEecCCC-----CeEEEEcC
Confidence 455678888886555444 2223333332 111111111 1112233445555444 55555445 89999998
Q ss_pred CCCceeEEeecCCceEEEEEecCccEEE---e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC
Q 014007 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV---L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
.+.+.............+++++++..+. . ++++.+.|..+++.+........+ ..++++|+|+.++++. ..
T Consensus 104 ~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~--~~ 180 (381)
T COG3391 104 ATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN--SD 180 (381)
T ss_pred cccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe--cC
Confidence 8888877777555788999999987666 2 478999998888888886555445 6899999999887765 46
Q ss_pred CCcEEEEEccCCceee-----eeccCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 238 KGQVRVEHYASKRTKF-----IMAHDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 238 d~~i~i~d~~~~~~~~-----~~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
++.|.++|.....+.. ...-......+.++|+|.++...... +. +...|..++.....-...... ....+
T Consensus 181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEeccccccC-CCCce
Confidence 8999999977765553 12223345678899999976665544 47 999999888777652221111 46778
Q ss_pred EECCCCCEEEEEe-CCCeEEEEEecCCCCCC
Q 014007 310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 310 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~ 339 (432)
.++|+|..+.+.. ..+.+.+-|..+....+
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 9999999988874 45889999988876444
No 344
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.19 E-value=0.00039 Score=63.72 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc---------------
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH--------------- 257 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--------------- 257 (432)
.+.+.+||+.+++....... ........|+|+|+.++++. ++.|.+++..++....+...
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~----~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvye 96 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR----DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYE 96 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE----TTEEEEESSTTSEEEESES--TTTEEESB--HHHH
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe----cCceEEEECCCCCeEEeccccceeEEcCccceecc
Confidence 46799999998765443332 56677899999999877663 68899998876544333211
Q ss_pred ---CCceeEEEEcCCCCEEEEEcCCCc-----------------------------------eEEEEECCCCceEE-EEE
Q 014007 258 ---DSRIACFALTQDGQLLATSSTKGT-----------------------------------LVRIFNTLDGTLLQ-EVR 298 (432)
Q Consensus 258 ---~~~i~~~~~sp~~~~l~~~~~dg~-----------------------------------~i~vwd~~~~~~~~-~~~ 298 (432)
-+.-..+-|||||++|+....|.. .+.|+|+.+++... ...
T Consensus 97 EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~ 176 (353)
T PF00930_consen 97 EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPP 176 (353)
T ss_dssp HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---
T ss_pred ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeec
Confidence 112357889999999987654432 14556665555431 111
Q ss_pred e--CCCcCceEEEEECCCCCEEEEEe--CC---CeEEEEEecCCC
Q 014007 299 R--GADRAEIYSLAFSSNAQWLAVSS--DK---GTVHVFNLKVNS 336 (432)
Q Consensus 299 ~--~~~~~~i~~~~~s~~~~~l~~~~--~d---g~i~iwd~~~~~ 336 (432)
. ......+..+.|.++++.|+..- .+ ..+.++|..+++
T Consensus 177 ~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~ 221 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE 221 (353)
T ss_dssp HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT
T ss_pred cccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc
Confidence 0 11234678889999888444332 22 245666776654
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.18 E-value=0.0014 Score=58.00 Aligned_cols=211 Identities=15% Similarity=0.079 Sum_probs=129.9
Q ss_pred EEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEe-eeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 92 SFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEML-FRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 92 ~~s~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
.|.++...|.-.. -++ |.-|+..+++.. .+. ....+.... ....+.++++. ..+.+++.+++..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~---~~~--~p~~~~~~~~~d~~g~Lv~~~--------~g~~~~~~~~~~~ 97 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR---VFP--SPGGFSSGALIDAGGRLIACE--------HGVRLLDPDTGGK 97 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE---EEE--CCCCcccceeecCCCeEEEEc--------cccEEEeccCCce
Confidence 6778887666665 333 888877655432 222 223334433 34444444443 4677888766655
Q ss_pred eEEee------cCCceEEEEEecCccEEEeC--------------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 169 IGELS------FRSEVRSVKLRRDRIIVVLE--------------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 169 ~~~~~------~~~~v~~~~~~~~~~~~~~d--------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
+..+. .....+.+...|+|.+.+.+ |.|+.+|. .+...+.+..+-..-+.++|+||++.
T Consensus 98 ~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~t 176 (307)
T COG3386 98 ITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKT 176 (307)
T ss_pred eEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCE
Confidence 33332 12456778888998887742 22444553 45555555443344467999999998
Q ss_pred EEEEeecCCCCcEEEEEccC------Cc--eeeeeccCCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCceEEEEEe
Q 014007 229 LVLVCPGLQKGQVRVEHYAS------KR--TKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~------~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~~~~~~~ 299 (432)
++++= +..+.|..|++.. +. ...+....+..-.++...+|.+.+++..+| . |.+|+.. ++++..+..
T Consensus 177 ly~aD--T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~-v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 177 LYVAD--TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR-VVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEEEe--CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce-EEEECCC-CcEEEEEEC
Confidence 87753 4568888888762 11 112223456677788888998876555554 6 9999976 999999985
Q ss_pred CCCcCceEEEEEC-CCCCEEEEEe
Q 014007 300 GADRAEIYSLAFS-SNAQWLAVSS 322 (432)
Q Consensus 300 ~~~~~~i~~~~~s-~~~~~l~~~~ 322 (432)
.. ..+++++|- ++.+.|.+.+
T Consensus 253 P~--~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 253 PV--KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CC--CCCccceEeCCCcCEEEEEe
Confidence 42 678888884 3445554444
No 346
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=7.7e-05 Score=65.32 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=70.0
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCcc--EEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
|++.+..+.+....+. +...|.+++|+|... +.. .+.+|+|.|+++...+..+..+ ..+.+++|.-+..+.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I-- 251 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI-- 251 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee--
Confidence 6666666666555444 778899999999765 222 3899999999998888888766 7889999999987654
Q ss_pred eecCCCCcEEEEEccCC
Q 014007 233 CPGLQKGQVRVEHYASK 249 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~ 249 (432)
++|..+|.|.+||++..
T Consensus 252 YaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQP 268 (463)
T ss_pred EEeccCceEEEEEccCC
Confidence 35789999999999873
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.0019 Score=59.80 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=145.8
Q ss_pred CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC---CCCCCCCCeEEE
Q 014007 86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG---PDPQYPLNKVMI 160 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~---~d~~~~~~~v~i 160 (432)
..-..+++++.+..+.+.. ++.|.+.|..+.+....... +. .-..+.+++++..+..+. .+ +.+.+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~--~P~~~~~~~~~~~vYV~n~~~~~-----~~vsv 144 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GL--GPVGLAVDPDGKYVYVANAGNGN-----NTVSV 144 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--cc--CCceEEECCCCCEEEEEecccCC-----ceEEE
Confidence 3345678899888554444 56699999766555422222 22 556677777764433332 25 89999
Q ss_pred EeCCCCceeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeE-----EEeeccCCcceEEEecCCCcEEE
Q 014007 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLH-----QIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
.|..+++.+........-..++++|+|..+.. ++.|.++|.......+ .+.... .-..+.+++++...++
T Consensus 145 id~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV 223 (381)
T COG3391 145 IDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYV 223 (381)
T ss_pred EeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEE
Confidence 99999988888653322389999999986662 7899999976655443 122222 2246899999999988
Q ss_pred EeecCCCCcEEEEEccCCceeeeec-cCC-ceeEEEEcCCCCEEEEEcCC-CceEEEEECCCCceEEEEEeCCCc-CceE
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIMA-HDS-RIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTLLQEVRRGADR-AEIY 307 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~~-~~~-~i~~~~~sp~~~~l~~~~~d-g~~i~vwd~~~~~~~~~~~~~~~~-~~i~ 307 (432)
+..++.++.+...|...+....... -.. ....+.++|+|+++.+.... +. +.+-|..+.+....+..+... ..+.
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~-V~vid~~~~~v~~~~~~~~~~~~~~~ 302 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGT-VSVIDGATDRVVKTGPTGNEALGEPV 302 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCe-EEEEeCCCCceeeeecccccccccce
Confidence 8755445789999988866654421 111 46678999999998887554 66 999999888887776643221 2355
Q ss_pred EEEECCC
Q 014007 308 SLAFSSN 314 (432)
Q Consensus 308 ~~~~s~~ 314 (432)
.+++.+.
T Consensus 303 ~~~~~~~ 309 (381)
T COG3391 303 SIAISPL 309 (381)
T ss_pred eccceee
Confidence 6666553
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=2.2e-05 Score=73.51 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=90.9
Q ss_pred cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 257 HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 257 ~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+...|.--+++..+++++.|+..|. +++|+-..++. ..++.....+.+..+..|++..++|.|+..|.|.++-+....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~-lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGS-VYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccce-EEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccC
Confidence 3444555556678899999999999 99999655544 344432233567778899999999999999999999988733
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
... . .|+.. .-+.|...|++++|++++..|++|...|+|..-.++.
T Consensus 110 p~~-~-----------------------~~~t~-----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 110 PRD-L-----------------------DYVTP-----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCc-c-----------------------eeecc-----ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 0 00000 0122677899999999999999999999999988877
No 349
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.09 E-value=0.012 Score=56.89 Aligned_cols=189 Identities=15% Similarity=0.217 Sum_probs=103.5
Q ss_pred CCEEEEEcCCcEEEEEcCCCeeEEEeecccCcc-eeE-------EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG-IGV-------VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~~v-------~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
+.+++++.++.|.-+|..+++............ ... ..+++..+..+ + +..+ +.|.-.|..+|+.
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~-v-~t~d-----g~l~ALDa~TGk~ 142 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVF-F-GTLD-----ARLVALDAKTGKV 142 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEE-E-EcCC-----CEEEEEECCCCCE
Confidence 333333334557777777777665544321000 000 11223333333 3 3344 8999999999999
Q ss_pred eEEeecCC-----ceEEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC-------------------
Q 014007 169 IGELSFRS-----EVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP------------------- 216 (432)
Q Consensus 169 ~~~~~~~~-----~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~------------------- 216 (432)
+....... .+.+--.--++.+++ . +|.|..+|.++|+.+-.+......
T Consensus 143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 88765211 122111112444444 2 578999999999887665332111
Q ss_pred ------------c-ceEEEecCCCcEEEEeecC---CC-----------CcEEEEEccCCceee-ee--ccCC-------
Q 014007 217 ------------K-GLCAVSQGVGSLVLVCPGL---QK-----------GQVRVEHYASKRTKF-IM--AHDS------- 259 (432)
Q Consensus 217 ------------~-~~~~~~~~~~~~~~~~~g~---~d-----------~~i~i~d~~~~~~~~-~~--~~~~------- 259 (432)
+ ...++.+..+.+++.+ |. .+ ..|.-.|+++++++- ++ .|+.
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~t-Gnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~ 301 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGT-GNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVN 301 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeC-CCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCC
Confidence 0 1235566666666654 22 01 256667777766542 22 2221
Q ss_pred ceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceE
Q 014007 260 RIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLL 294 (432)
Q Consensus 260 ~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~ 294 (432)
...-+.+..+|+ .++.+..+|. +++.|.++|+.+
T Consensus 302 ~p~l~d~~~~G~~~~~v~~~~K~G~-~~vlDr~tG~~i 338 (527)
T TIGR03075 302 EMILFDLKKDGKPRKLLAHADRNGF-FYVLDRTNGKLL 338 (527)
T ss_pred CcEEEEeccCCcEEEEEEEeCCCce-EEEEECCCCcee
Confidence 111222234665 7889999999 999999999886
No 350
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.07 E-value=0.0072 Score=58.03 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=126.4
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcc---eeEE-EEeeeCCeEEEecCCCCCCC----CCCeEEEEeCCCCce
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGG---IGVV-EMLFRCNILALVGGGPDPQY----PLNKVMIWDDHQSRC 168 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~~s~~~d~~~----~~~~v~iwd~~~~~~ 168 (432)
..++.++ ++.|.-+|.++++........ .+. ..+. ...... +.+++.... ..+ .++.|..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~-~~v~vg~~~-~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVK-KLVIIGSSG-AEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEEC-CEEEEeccc-cccccCCCCcEEEEEECCCCce
Confidence 3455555 555888999888887665553 110 0011 112222 334333211 000 128899999999998
Q ss_pred eEEeecC-Cc--------------------e-EEEEEecC-ccEEE-e-CC------------------eEEEEEcCCCe
Q 014007 169 IGELSFR-SE--------------------V-RSVKLRRD-RIIVV-L-EQ------------------KIFVYNFADLK 205 (432)
Q Consensus 169 ~~~~~~~-~~--------------------v-~~~~~~~~-~~~~~-~-d~------------------~i~i~d~~~~~ 205 (432)
+..+... .. + ...++.+. +.+++ + ++ .|.-+|..+|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 8887621 10 1 12334432 33433 2 33 69999999999
Q ss_pred eeEEEeeccCCc------ceEEEe----cCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE
Q 014007 206 LLHQIETIANPK------GLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT 275 (432)
Q Consensus 206 ~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~ 275 (432)
.+..++...... ....+. -++....++..+..+|.+..+|.++++..--.... ...++.+| ..++.
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv 343 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--ccccccCC--ceEEE
Confidence 887765322111 011111 23332222333557899999999887654322111 11233344 22333
Q ss_pred E------------------cCCCceEEEEECCCCceEEEEEeCCCc------Cce--EEEEECCCCCEEEEEeCCCeEEE
Q 014007 276 S------------------STKGTLVRIFNTLDGTLLQEVRRGADR------AEI--YSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 276 ~------------------~~dg~~i~vwd~~~~~~~~~~~~~~~~------~~i--~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
+ ..+|. |.-.|+.+|+.+-+.....+. ... ..+.. .+..|+.++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceE-EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEE
Confidence 2 23567 888899999888777643111 111 11222 4578888899999999
Q ss_pred EEecCCCCC
Q 014007 330 FNLKVNSGS 338 (432)
Q Consensus 330 wd~~~~~~~ 338 (432)
+|.++++.+
T Consensus 421 ld~~tG~~l 429 (488)
T cd00216 421 FDATTGKEL 429 (488)
T ss_pred EECCCCcee
Confidence 999999843
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.012 Score=54.99 Aligned_cols=168 Identities=13% Similarity=0.168 Sum_probs=90.7
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEe--eccCCcceE---EEecCCCc
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE--TIANPKGLC---AVSQGVGS 228 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~ 228 (432)
.|++|+ ..|+.+..+. ..+.+.++.|+.+..+++ .||.+++||+. |+....+. .....+... .....+.+
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCC
Confidence 599998 5677888877 458999999999877777 39999999986 33311111 011111111 11112234
Q ss_pred EEEEeecCCCCcEEEEEccCCc--eeeeeccCC---------cee-EEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 229 LVLVCPGLQKGQVRVEHYASKR--TKFIMAHDS---------RIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~---------~i~-~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
+++.+ .++.+.+..--... .+.+..-.. ... ...++.+....+....++. +.+.+-...+.
T Consensus 140 ivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--- 212 (410)
T PF04841_consen 140 IVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--- 212 (410)
T ss_pred EEEEC---CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc---
Confidence 44443 34444443322211 111110000 000 0223334444444444444 44333222111
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+. ..+++..|+.||+|++||.-..+|.+.|.+..-.+
T Consensus 213 i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~ 249 (410)
T PF04841_consen 213 ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE 249 (410)
T ss_pred cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc
Confidence 21 23689999999999999999999999888765443
No 352
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0027 Score=61.50 Aligned_cols=187 Identities=18% Similarity=0.250 Sum_probs=116.3
Q ss_pred eeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCc-eEEEEEecCccEEEe---C-C----eEEEEEcCCC-
Q 014007 136 LFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSE-VRSVKLRRDRIIVVL---E-Q----KIFVYNFADL- 204 (432)
Q Consensus 136 ~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~-v~~~~~~~~~~~~~~---d-~----~i~i~d~~~~- 204 (432)
++++++..++-|..+ |.|.+++ ..-+.++.++ +... |..+....+..++++ | + .|+||+++.-
T Consensus 30 c~~s~~~~vvigt~~-----G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTAD-----GRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEeecc-----ccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 356666777777777 8888887 4445556666 5555 554544445455553 2 2 6999998752
Q ss_pred -----eee--EEEee-----ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-----CceeeeeccCCceeEEEEc
Q 014007 205 -----KLL--HQIET-----IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-----KRTKFIMAHDSRIACFALT 267 (432)
Q Consensus 205 -----~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~s 267 (432)
.++ +.+.. ...++.+++++.+-.. ++ .|-.+|.|..+.-+- .+......-..+|+.+++.
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~--Iv-~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT--IV-CGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE--EE-EEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 223 12222 2345677888888443 33 366889998885432 1222233456789999999
Q ss_pred CCCCE-EEEEcCCCceEEEEECCCCce-EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 268 QDGQL-LATSSTKGTLVRIFNTLDGTL-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 268 p~~~~-l~~~~~dg~~i~vwd~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.++.. ++++.. .. |.+|.+....+ ...+.. |...+.|..|++....+++++ +..|.+|+....+
T Consensus 181 ~d~~s~lFv~Tt-~~-V~~y~l~gr~p~~~~ld~--~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 181 SDGKSVLFVATT-EQ-VMLYSLSGRTPSLKVLDN--NGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred cCCceeEEEEec-ce-eEEEEecCCCcceeeecc--CCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 98887 333333 34 89999874442 333442 557889999987666465554 4469999987544
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.98 E-value=0.0039 Score=55.01 Aligned_cols=194 Identities=14% Similarity=0.191 Sum_probs=119.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe-------------ecccCcceeEEEEe---eeCCeEEEecCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR-------------DFERGGGIGVVEML---FRCNILALVGGGPD 150 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~-------------~~~~~~~~~v~~~~---~~~~~~~~~s~~~d 150 (432)
.|..+...++-+.|++-+|+.+.+++++........ .+. ....+..++ -......++.+..
T Consensus 37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~f~~~~~~~~~~~L~va~k- 113 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLP--ETKGVSFFAVNGGHEGSRRLCVAVK- 113 (275)
T ss_pred eEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccccccc--ccCCeeEEeeccccccceEEEEEEC-
Confidence 399999999888888777888999998755443211 111 223333333 2233344444443
Q ss_pred CCCCCCeEEEEeCCCC-----ceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeecc-----------
Q 014007 151 PQYPLNKVMIWDDHQS-----RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIA----------- 214 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----------- 214 (432)
.+|.+|.+... +..+++.....+..++|..+...++..+...+.|+.++.....+....
T Consensus 114 -----k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~ 188 (275)
T PF00780_consen 114 -----KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS 188 (275)
T ss_pred -----CEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccC
Confidence 68888877653 456677788999999999777777778889999998766543332111
Q ss_pred -CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007 215 -NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 215 -~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
.++..+.+. + +. ++.+ .+..-.+.|..+...+ .+.- ...+.++++ ...||+..+. +. |.||++.++
T Consensus 189 ~~~~~~~~~~-~-~e-~Ll~---~~~~g~fv~~~G~~~r~~~i~W-~~~p~~~~~--~~pyli~~~~-~~-iEV~~~~~~ 257 (275)
T PF00780_consen 189 SKPLGIFQLS-D-NE-FLLC---YDNIGVFVNKNGEPSRKSTIQW-SSAPQSVAY--SSPYLIAFSS-NS-IEVRSLETG 257 (275)
T ss_pred CCceEEEEeC-C-ce-EEEE---ecceEEEEcCCCCcCcccEEEc-CCchhEEEE--ECCEEEEECC-CE-EEEEECcCC
Confidence 122222222 1 23 3443 3444455566554333 2222 335556666 3347766665 45 999999999
Q ss_pred ceEEEEEe
Q 014007 292 TLLQEVRR 299 (432)
Q Consensus 292 ~~~~~~~~ 299 (432)
++++.+..
T Consensus 258 ~lvQ~i~~ 265 (275)
T PF00780_consen 258 ELVQTIPL 265 (275)
T ss_pred cEEEEEEC
Confidence 99999884
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.92 E-value=0.0011 Score=64.30 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=66.5
Q ss_pred CcceEEEecCCCcEEEEee-----cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE----
Q 014007 216 PKGLCAVSQGVGSLVLVCP-----GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF---- 286 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~-----g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw---- 286 (432)
.+...+++|+|+.++++.. ......|.+++..... ..+.. ....+.-.|+|+|+.|++.......+++.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4567899999998766542 1123356665654333 33322 22478899999998887775432213333
Q ss_pred -------ECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007 287 -------NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 287 -------d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 332 (432)
++..++... . ....|..+.|||||..++... +|.|++=-+
T Consensus 429 ~gql~~~~vd~ge~~~--~---~~g~Issl~wSpDG~RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 429 TGQLARTPVDASAVAS--R---VPGPISELQLSRDGVRAAMII-GGKVYLAVV 475 (591)
T ss_pred CceEEEEeccCchhhh--c---cCCCcCeEEECCCCCEEEEEE-CCEEEEEEE
Confidence 333322221 1 235799999999999998776 577777433
No 355
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.0083 Score=52.94 Aligned_cols=216 Identities=16% Similarity=0.215 Sum_probs=122.5
Q ss_pred CCCCEEEEEcCCcEEEEEc-CCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE---
Q 014007 95 QDHGCFAAGTDHGFRIYNC-DPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--- 170 (432)
Q Consensus 95 ~~~~~l~~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~--- 170 (432)
..++.|+.|+++|+.+++. ...+.. ... +...|..+...++...++.-. | +.++++++..-....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~--~i~---~~~~I~ql~vl~~~~~llvLs-d-----~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPT--RIL---KLSSITQLSVLPELNLLLVLS-D-----GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccce--eEe---ecceEEEEEEecccCEEEEEc-C-----CccEEEEchhhccccccc
Confidence 3577899999889999998 322222 222 333488888777544444333 2 799999987654333
Q ss_pred ------------EeecCCceEEEE---EecCccEEE--eCCeEEEEEcCCC-----eeeEEEeeccCCcceEEEecCCCc
Q 014007 171 ------------ELSFRSEVRSVK---LRRDRIIVV--LEQKIFVYNFADL-----KLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 171 ------------~~~~~~~v~~~~---~~~~~~~~~--~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
.+.....+...+ -......++ ...+|.+|..... +..+++... ..+..++|. ++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~ 150 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNK 150 (275)
T ss_pred cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCE
Confidence 122233444444 112233333 4778888887653 455555443 455567777 444
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeecc-------------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH-------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~ 295 (432)
+.+++ .....+.|+.++....+... ..++..+.. +++.+|++- |.. -.+.| ..|+..+
T Consensus 151 i~v~~----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~-g~fv~-~~G~~~r 221 (275)
T PF00780_consen 151 ICVGT----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNI-GVFVN-KNGEPSR 221 (275)
T ss_pred EEEEe----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cce-EEEEc-CCCCcCc
Confidence 54432 46688899987655544321 123334444 345666543 222 23334 4554443
Q ss_pred --EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 296 --EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 296 --~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
.+.- ...+.++++. ..||+.... +.|.||++.+++.++
T Consensus 222 ~~~i~W---~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 222 KSTIQW---SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred ccEEEc---CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 3432 2455667763 357777665 559999999998543
No 356
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.90 E-value=0.022 Score=53.65 Aligned_cols=195 Identities=10% Similarity=0.119 Sum_probs=109.5
Q ss_pred eEEEEeeeCCeEEEec-----CCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C---------
Q 014007 131 GVVEMLFRCNILALVG-----GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E--------- 193 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s-----~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d--------- 193 (432)
.+..+.++|++..++- |+.. ..++++|+.+|+.+...-.......+.|.+++..++. +
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~-----~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW-----YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE-----EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCce-----EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 3336778888876653 2322 5799999999977654322222234999999776652 1
Q ss_pred --CeEEEEEcCCCee--eEEEeeccCC--cceEEEecCCCcEEEEeecCCC-CcEEEEEccCC-----ceeeeeccCCce
Q 014007 194 --QKIFVYNFADLKL--LHQIETIANP--KGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYASK-----RTKFIMAHDSRI 261 (432)
Q Consensus 194 --~~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~~~-----~~~~~~~~~~~i 261 (432)
..|+.|.+.+... ...+...... ...+..+.+++.+++.+....+ ..+.+.|+... ....+......+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 1378888876532 2334443333 3357789999988776655555 67888888764 455555555555
Q ss_pred eEEEEcCCCCEEEEEcC---CCceEEEEECCCCce---EEEEEeCCCcCceEEEEECCCCCEEE-EEeCCC--eEEEEEe
Q 014007 262 ACFALTQDGQLLATSST---KGTLVRIFNTLDGTL---LQEVRRGADRAEIYSLAFSSNAQWLA-VSSDKG--TVHVFNL 332 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~---dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg--~i~iwd~ 332 (432)
....-+..+.+++.... ++. |.-.++.+... ...+..+.....+..+.. .+.+|+ ....++ .|+++++
T Consensus 280 ~~~v~~~~~~~yi~Tn~~a~~~~-l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 280 EYYVDHHGDRLYILTNDDAPNGR-LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEEEETTEEEEEE-TT-TT-E-EEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred EEEEEccCCEEEEeeCCCCCCcE-EEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 44333334444444332 345 66677777652 223333221124555554 344444 444454 5778888
Q ss_pred c
Q 014007 333 K 333 (432)
Q Consensus 333 ~ 333 (432)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 7
No 357
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.86 E-value=5.1e-06 Score=76.76 Aligned_cols=194 Identities=13% Similarity=0.229 Sum_probs=119.6
Q ss_pred EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee-EEee--cCCceEEEEEec-CccEEEe-------CCeEEEEE
Q 014007 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI-GELS--FRSEVRSVKLRR-DRIIVVL-------EQKIFVYN 200 (432)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~-~~~~--~~~~v~~~~~~~-~~~~~~~-------d~~i~i~d 200 (432)
+++..+..+...++.|..+ |.|-+-.+....-- .++. +...+++++|++ |...++. |..+.|||
T Consensus 61 cva~~y~~d~cIlavG~at-----G~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSAT-----GNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred eehhhcCCchhhhhhcccc-----CceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 3333344555667777777 99998887654322 3333 778899999998 4445542 67899999
Q ss_pred cCCC--eeeEE--Eee-ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC-CCCEEE
Q 014007 201 FADL--KLLHQ--IET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLLA 274 (432)
Q Consensus 201 ~~~~--~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~ 274 (432)
+.++ .+... +.. .......++|--+.+ ++. +|.....+.++|++........-....+..+..+| .+.|++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvl-aGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVL-AGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcc--hhh-cccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence 9875 22211 111 223344566663333 333 46677899999999654444334455677788888 777876
Q ss_pred EEcCCCceEEEEEC-CCCc-eEEEEEeCC--CcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCC
Q 014007 275 TSSTKGTLVRIFNT-LDGT-LLQEVRRGA--DRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVN 335 (432)
Q Consensus 275 ~~~~dg~~i~vwd~-~~~~-~~~~~~~~~--~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~ 335 (432)
+-. ||. |.+||. +.-+ ++..+.... ....+..++|+|... .+++.. ..++|++||+...
T Consensus 213 s~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 213 SNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred ccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccccc
Confidence 655 888 999993 3222 222222110 113489999999543 344444 6689999998653
No 358
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.86 E-value=0.015 Score=52.87 Aligned_cols=224 Identities=13% Similarity=0.088 Sum_probs=102.7
Q ss_pred CCCEEEEEc-C-CcEEEEEcC--CCeeEEEeeccc------CcceeEEEEeeeCCeEEEecCCCCCC-CCCCeEEEEeCC
Q 014007 96 DHGCFAAGT-D-HGFRIYNCD--PFREIFRRDFER------GGGIGVVEMLFRCNILALVGGGPDPQ-YPLNKVMIWDDH 164 (432)
Q Consensus 96 ~~~~l~~~~-~-~~i~iw~~~--~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~s~~~d~~-~~~~~v~iwd~~ 164 (432)
+.++|++.+ . +.|.|+|+. ..+....+.++. ..-..-.....-+++..++++-.|+. ...|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 466788777 4 449999985 334444444431 01122233344567766655332211 223778899988
Q ss_pred CCceeEEeec----CCceEEEEEecCccEEEe-----------------------CCeEEEEEcCCCeeeEEEeeccCC-
Q 014007 165 QSRCIGELSF----RSEVRSVKLRRDRIIVVL-----------------------EQKIFVYNFADLKLLHQIETIANP- 216 (432)
Q Consensus 165 ~~~~~~~~~~----~~~v~~~~~~~~~~~~~~-----------------------d~~i~i~d~~~~~~~~~~~~~~~~- 216 (432)
+.+.+...+. ..--+.+-|.|....+++ ..++.+||+.+.+.++++......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7777776662 223456667776655552 358999999999999999765432
Q ss_pred -cceEEEecC--CCcEEEEeecCCCCcEEEEEc-cCC-----ceeeeec-----------------cCCceeEEEEcCCC
Q 014007 217 -KGLCAVSQG--VGSLVLVCPGLQKGQVRVEHY-ASK-----RTKFIMA-----------------HDSRIACFALTQDG 270 (432)
Q Consensus 217 -~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~-~~~-----~~~~~~~-----------------~~~~i~~~~~sp~~ 270 (432)
.-.+.|..+ ..+-++.++ -..+|..|-- +.+ ++..+.. -..-|+.|.+|.|.
T Consensus 246 ~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred ceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 223555444 444444443 2344444432 221 2222211 13457999999999
Q ss_pred CEEEEEcC-CCceEEEEECCCCc---eEEEEEeCC--------------CcCceEEEEECCCCCEEEEEe
Q 014007 271 QLLATSST-KGTLVRIFNTLDGT---LLQEVRRGA--------------DRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 271 ~~l~~~~~-dg~~i~vwd~~~~~---~~~~~~~~~--------------~~~~i~~~~~s~~~~~l~~~~ 322 (432)
++|..++. .|. |+.||+.+.. ++..+..+. -.+...-+..|-||+.|...+
T Consensus 324 rfLYvs~W~~Gd-vrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 324 RFLYVSNWLHGD-VRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -EEEEEETTTTE-EEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred CEEEEEcccCCc-EEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 99987664 677 9999998743 333333211 112346778888998887654
No 359
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.85 E-value=0.014 Score=49.88 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=104.1
Q ss_pred CCCCCCCeEEEEEcCCCCEEE-EEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 81 SSSPPPTLLHISFNQDHGCFA-AGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~-~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
+.+-...+..|+|+|+...|+ +....+ |..++.+ ++......+. .....-.+++..++.++++..++ +.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~--g~~D~EgI~y~g~~~~vl~~Er~-----~~L 88 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLD--GFGDYEGITYLGNGRYVLSEERD-----QRL 88 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-S--S-SSEEEEEE-STTEEEEEETTT-----TEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCC--CCCCceeEEEECCCEEEEEEcCC-----CcE
Confidence 444455699999999866555 444444 6556653 4444334453 45567788888899998888777 999
Q ss_pred EEEeCCCCc------eeEEee------cCCceEEEEEecCcc-EEEe--CCeEEEEEcCC---CeeeEEEe--------e
Q 014007 159 MIWDDHQSR------CIGELS------FRSEVRSVKLRRDRI-IVVL--EQKIFVYNFAD---LKLLHQIE--------T 212 (432)
Q Consensus 159 ~iwd~~~~~------~~~~~~------~~~~v~~~~~~~~~~-~~~~--d~~i~i~d~~~---~~~~~~~~--------~ 212 (432)
.++++.... ....+. ++..+-+++|++.+. +++. ..-..+|.+.. ...+.... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 999884321 122222 345689999999644 4443 33344554432 11111111 1
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---------CceeEEEEcCCCCEEEEEcCCCceE
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLV 283 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~~i 283 (432)
.......+.++|..+++++.+ .....|..+|.....+..+.-.. .....|+|.++|++.++ ++-+. .
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS--~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNl-f 244 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILS--DESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNL-F 244 (248)
T ss_dssp -SS---EEEEETTTTEEEEEE--TTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTE-E
T ss_pred eeccccceEEcCCCCeEEEEE--CCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCce-E
Confidence 223456789999988888875 47888999996665444333211 35779999999965544 45554 5
Q ss_pred EEE
Q 014007 284 RIF 286 (432)
Q Consensus 284 ~vw 286 (432)
++|
T Consensus 245 y~f 247 (248)
T PF06977_consen 245 YRF 247 (248)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.83 E-value=0.0029 Score=45.73 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=51.5
Q ss_pred eeEEEEcC---CC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 261 IACFALTQ---DG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 261 i~~~~~sp---~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
|++|++.. +| +.|++|+.|.. ||+|+ ..+.+.++. ....|++++-... ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~--~~e~~~Ei~---e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFK--GDEIVAEIT---ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEe--CCcEEEEEe---cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc
Confidence 55666654 33 57999999999 99997 557888887 4478888887766 5688888999999997643
No 361
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.83 E-value=0.025 Score=52.06 Aligned_cols=76 Identities=16% Similarity=0.289 Sum_probs=50.9
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC-----------------CCEEE-E
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN-----------------AQWLA-V 320 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~-----------------~~~l~-~ 320 (432)
..+.++..+|++++.|+...-|. |.++|+.++..++.+++-. ...+.-+..... ..+|+ -
T Consensus 308 R~~~~i~~sP~~~laA~tDslGR-V~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGR-VLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCc-EEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 45788999999998888888888 9999999998888877532 111111111111 11222 3
Q ss_pred EeCCCeEEEEEecCCC
Q 014007 321 SSDKGTVHVFNLKVNS 336 (432)
Q Consensus 321 ~~~dg~i~iwd~~~~~ 336 (432)
+-.-|.|.||.++++.
T Consensus 386 aprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 386 APRRGILEVWSMRQGP 401 (415)
T ss_pred eccCCeEEEEecCCCC
Confidence 4467888888888876
No 362
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=0.016 Score=49.18 Aligned_cols=157 Identities=11% Similarity=0.076 Sum_probs=104.4
Q ss_pred CCCceeEEeecCCceEEEEEecCccEEE-e----CCeEEEEEcCCCeeeEEEeeccC--CcceEEEecCCCcEEEEeecC
Q 014007 164 HQSRCIGELSFRSEVRSVKLRRDRIIVV-L----EQKIFVYNFADLKLLHQIETIAN--PKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 164 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~----d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~ 236 (432)
+.|+++...........++++|.....+ . .-...++|....+.+..+....+ -...=.|++||..+| ++-+.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LY-ATEnd 134 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLY-ATEND 134 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEE-eecCC
Confidence 4577777777777778899998654433 2 44688999988877666644332 223457999998776 33222
Q ss_pred ---CCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCC------------------CceEEEEECCCCce
Q 014007 237 ---QKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTK------------------GTLVRIFNTLDGTL 293 (432)
Q Consensus 237 ---~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------------------g~~i~vwd~~~~~~ 293 (432)
..|.|-|||.+. .++-.+..|.-....+.+.+||+.|+.+... -. +.+.|..+|++
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePS-lvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPS-LVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCcc-EEEEeccccch
Confidence 348899999987 3455677888888999999999998876531 11 44555556665
Q ss_pred EEEEEeC--CCcCceEEEEECCCCCEEEEEe
Q 014007 294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 294 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
+.+.... .+...|..++..+||+.++.+-
T Consensus 214 iekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 214 IEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 5443322 2335677888888887665543
No 363
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.73 E-value=0.025 Score=50.98 Aligned_cols=198 Identities=11% Similarity=0.037 Sum_probs=93.3
Q ss_pred eeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEeecC-CceEEEEEecCccEEE-e--CCeEEEEEcCCCeeeEEE
Q 014007 136 LFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV-L--EQKIFVYNFADLKLLHQI 210 (432)
Q Consensus 136 ~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-~--d~~i~i~d~~~~~~~~~~ 210 (432)
+|.+++. ++.++..+ ....+++.|+.+++..+--... .......++++.+.++ . +..|+-.|+.+.+....+
T Consensus 42 ~ft~dG~kllF~s~~d---g~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFD---GNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp -B-TTS-EEEEEE-TT---SS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CcCCCCCEEEEEeccC---CCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 4556664 33344333 1267888899988776655532 3333566778777665 3 458999999998765555
Q ss_pred eeccCCcceEEEec--CCCcEEEEeecCC-------------------CCcEEEEEccCCceeeeeccCCceeEEEEcCC
Q 014007 211 ETIANPKGLCAVSQ--GVGSLVLVCPGLQ-------------------KGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269 (432)
Q Consensus 211 ~~~~~~~~~~~~~~--~~~~~~~~~~g~~-------------------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~ 269 (432)
.....-+....+.. ++..++-+..... ...|...|+.++....+..-...+.-+.|+|.
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT 198 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence 55555554445543 3333221111111 14455567777777777777888999999995
Q ss_pred C-CEEEEEcC---CCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-----CCCeEEEEEecCCC
Q 014007 270 G-QLLATSST---KGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-----DKGTVHVFNLKVNS 336 (432)
Q Consensus 270 ~-~~l~~~~~---dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-----~dg~i~iwd~~~~~ 336 (432)
. ..|+-|-+ +...-|||-++ .+.....+..+.....+..=-|.|||..|.--+ .+..|.-+|+.+++
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 4 45555443 11002455433 333333333222223456667899998665422 23355666666654
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.023 Score=52.39 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=113.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~ 165 (432)
.|+.+.|+++..-|++|...| |.||.....+..-.+. ...-..+.+.+ +-..+ +.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~-----~~~~~~~~~~~----~~~~~-------~~~~l~di~~ 66 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE-----QPPDLDYNFRR----FSLNN-------SPGKLTDISD 66 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------GGG-------SS-SEEE-GG
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC-----CCcccCccccc----ccccC-------CCcceEEehh
Confidence 589999999988888888666 8888764332211000 01111111100 00000 1111222211
Q ss_pred --------C-ceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeecc--------CCcceEEEe--
Q 014007 166 --------S-RCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIA--------NPKGLCAVS-- 223 (432)
Q Consensus 166 --------~-~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~-- 223 (432)
| .+...+. ..++|++++.+.-|-..+. +|.+.|.|++....+..-.... ..++.+.|.
T Consensus 67 r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 67 RAPPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp G--TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE
T ss_pred hCCcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE
Confidence 1 1223333 4789999999877766653 8999999998877776632222 133445444
Q ss_pred -cCCCc---EEEEeecCCCCcEEEEEccC---Cce-----eeeeccCCceeEEE-EcCC---------------------
Q 014007 224 -QGVGS---LVLVCPGLQKGQVRVEHYAS---KRT-----KFIMAHDSRIACFA-LTQD--------------------- 269 (432)
Q Consensus 224 -~~~~~---~~~~~~g~~d~~i~i~d~~~---~~~-----~~~~~~~~~i~~~~-~sp~--------------------- 269 (432)
..++. +.+. .|...|.+.+|.+.- +.. .....+.+.|..|. |+.+
T Consensus 147 ~~~~D~ySSi~L~-vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i 225 (395)
T PF08596_consen 147 TLGGDGYSSICLL-VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISI 225 (395)
T ss_dssp E-TTSSSEEEEEE-EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT---
T ss_pred ecCCCcccceEEE-EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCc
Confidence 22222 3333 466789999998752 111 11124556665554 3221
Q ss_pred CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC-----CCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS-----SNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 270 ~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
..++++++.. . ||++...+.+..++... .......+.+- ..+..|++-..+|.|++|.+...+.
T Consensus 226 ~g~vVvvSe~-~-irv~~~~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 226 PGYVVVVSES-D-IRVFKPPKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp -EEEEEE-SS-E-EEEE-TT---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred CcEEEEEccc-c-eEEEeCCCCcccceeec--cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 1245555544 4 99999988887766652 22233344452 3566788888999999999988774
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.009 Score=59.21 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=112.0
Q ss_pred CceEEEEEe--cCccEEEeCCeEEEEEcCC-Cee-----eEEEeeccCCc---ceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007 176 SEVRSVKLR--RDRIIVVLEQKIFVYNFAD-LKL-----LHQIETIANPK---GLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (432)
Q Consensus 176 ~~v~~~~~~--~~~~~~~~d~~i~i~d~~~-~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~d~~i~i~ 244 (432)
....+|+.. .|..+++-+..|-|+.... +.+ +..+....+.. ..+-++-....+++. .......|+-.
T Consensus 431 ~~n~~Lavg~k~DrSfVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~-~~~~~~~ly~m 509 (794)
T PF08553_consen 431 EKNSSLAVGYKNDRSFVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILL-DPNNPNKLYKM 509 (794)
T ss_pred CccceeEeeeccCceEEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEee-cCCCCCceEEE
Confidence 345556655 4666777677888888652 221 11111111100 011222233444444 33356788888
Q ss_pred EccCCce-eeeeccCCc-eeEEEEcCC-------CCEEEEEcCCCceEEEEECCCCc--eEE-EEEeCCCcCceEEEEEC
Q 014007 245 HYASKRT-KFIMAHDSR-IACFALTQD-------GQLLATSSTKGTLVRIFNTLDGT--LLQ-EVRRGADRAEIYSLAFS 312 (432)
Q Consensus 245 d~~~~~~-~~~~~~~~~-i~~~~~sp~-------~~~l~~~~~dg~~i~vwd~~~~~--~~~-~~~~~~~~~~i~~~~~s 312 (432)
|+..+++ ..+..|... |..+ .|+ ..--+.|-.+.. |..||.|-.. ++. ....-.......|++-+
T Consensus 510 DLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt 586 (794)
T PF08553_consen 510 DLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT 586 (794)
T ss_pred ecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCc-eEEeccCCCCCceeeccccccccCCCceEEEec
Confidence 9988665 445555433 4444 343 223455666667 9999998632 331 11111133467788877
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
.+| +||+|+.+|.||+||-. ++..+ ..+.+-..+|..|..+.||
T Consensus 587 ~~G-~iavgs~~G~IRLyd~~-g~~AK----------------------------------T~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 587 EDG-YIAVGSNKGDIRLYDRL-GKRAK----------------------------------TALPGLGDPIIGIDVTADG 630 (794)
T ss_pred CCc-eEEEEeCCCcEEeeccc-chhhh----------------------------------hcCCCCCCCeeEEEecCCC
Confidence 776 68999999999999943 22111 1233445689999999999
Q ss_pred CEEEEEecCCeEEEEEec
Q 014007 393 NTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~~~ 410 (432)
++|++.| +..+.+++.-
T Consensus 631 kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 631 KWILATC-KTYLLLIDTL 647 (794)
T ss_pred cEEEEee-cceEEEEEEe
Confidence 9998766 5566666653
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=5.1e-05 Score=72.60 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=87.0
Q ss_pred eEEEEcCCCCEEEEEcC----CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 262 ACFALTQDGQLLATSST----KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~----dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
+-..|+|...++++++. .|. |.|| ..+|++..... .+-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GS-VtIf-adtGEPqr~Vt---~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGS-VTIF-ADTGEPQRDVT---YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCce-EEEE-ecCCCCCcccc---cceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 44578998888887764 466 8898 47887655554 224467899999988999999999999999887651
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
-.....|...|..+.||++|..|+++..-|.|.+|.+|.
T Consensus 94 -----------------------------------htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 94 -----------------------------------HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred -----------------------------------eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 011334677899999999999999999999999999985
No 367
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.003 Score=60.71 Aligned_cols=152 Identities=15% Similarity=0.148 Sum_probs=99.0
Q ss_pred cCCCCCCCeEEEEEcCC-------------CCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-----
Q 014007 80 TSSSPPPTLLHISFNQD-------------HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN----- 140 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-------------~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 140 (432)
....|.+.|.-..+.-+ |.++++|+++| |.|-.+.+.+......+ ...+..++++|+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df----~rpiksial~Pd~~~~~ 128 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF----KRPIKSIALHPDFSRQQ 128 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec----CCcceeEEeccchhhhh
Confidence 34556666666665544 99999999666 99988877776644444 466777888886
Q ss_pred eEEEecCCCCCCCCCCeEEEEeCCC---CceeEEee-cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCC
Q 014007 141 ILALVGGGPDPQYPLNKVMIWDDHQ---SRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANP 216 (432)
Q Consensus 141 ~~~~~s~~~d~~~~~~~v~iwd~~~---~~~~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 216 (432)
...+++|+.- | +.++.-.- ...+ .+. ..++|.++.|..+-...+.|--|++||+.+++.+..++.....
T Consensus 129 sk~fv~GG~a-----g-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 129 SKQFVSGGMA-----G-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQS 201 (846)
T ss_pred hhheeecCcc-----e-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEecCCCcEEEeccccceeeccCCCCCC
Confidence 4567777765 6 77775221 1122 233 6899999999655444445888999999998888777544433
Q ss_pred cc------eEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 217 KG------LCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 217 ~~------~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
++ .+.|.++. .+++ | ...+|+|..++
T Consensus 202 ~R~e~fpphl~W~~~~--~LVI--G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDED--RLVI--G-WGDSVKICSIK 233 (846)
T ss_pred CCcccCCCceEecCCC--eEEE--e-cCCeEEEEEEe
Confidence 32 24444443 3333 2 44678887776
No 368
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.63 E-value=1.2e-05 Score=74.42 Aligned_cols=164 Identities=15% Similarity=0.117 Sum_probs=107.0
Q ss_pred ccCCCCCCCeEEEEEcC-CCCEEEEEcC-----CcEEEEEcCCC--eeEEEeecccCcceeEEEEeeeCCeEEEecCCCC
Q 014007 79 STSSSPPPTLLHISFNQ-DHGCFAAGTD-----HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~-----~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 150 (432)
.+..++....++++|++ |...||+|-+ ..+.|||+.+. .......+..+.......++|..+...+.+|...
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~s 175 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTS 175 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccccc
Confidence 45666778899999998 5678888852 23999999765 1111122322233444577787888888888876
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec-CccEEE--eCCeEEEEE-cCC-CeeeEEEeeccC----CcceEE
Q 014007 151 PQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVV--LEQKIFVYN-FAD-LKLLHQIETIAN----PKGLCA 221 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~--~d~~i~i~d-~~~-~~~~~~~~~~~~----~~~~~~ 221 (432)
..+.++|++........-....+..+.+.| .+.+++ .||.|.+|| .+. ..++..+....+ .+..++
T Consensus 176 -----r~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a 250 (783)
T KOG1008|consen 176 -----RSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA 250 (783)
T ss_pred -----chhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence 799999986432111111344677788888 777888 499999999 332 222332222222 366789
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccC
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~ 248 (432)
|.|-...++.++ ....+.|+++|+..
T Consensus 251 ycPtrtglla~l-~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 251 YCPTRTGLLAVL-SRDSITIRLYDICV 276 (783)
T ss_pred eccCCcchhhhh-ccCcceEEEecccc
Confidence 999877665544 34678999999865
No 369
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.059 Score=52.12 Aligned_cols=233 Identities=10% Similarity=0.069 Sum_probs=126.0
Q ss_pred EEEEc-CCcEEEEEcCCCeeEEEeecccCcc--eeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-c
Q 014007 100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-F 174 (432)
Q Consensus 100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~ 174 (432)
+++++ ++.+.-+|..+++........ .+. ..+.+ .... ++..++.......-.+|.|.-+|.++|+.+..+. .
T Consensus 123 v~v~t~dg~l~ALDa~TGk~~W~~~~~-~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 123 VFFGTLDARLVALDAKTGKVVWSKKNG-DYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEEEcCCCEEEEEECCCCCEEeecccc-cccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 34444 556788888888777554432 111 11111 1112 3344443221000012899999999999887765 1
Q ss_pred -CC------------------------------ceE-EEEEecCccEEE--e-------------CC----eEEEEEcCC
Q 014007 175 -RS------------------------------EVR-SVKLRRDRIIVV--L-------------EQ----KIFVYNFAD 203 (432)
Q Consensus 175 -~~------------------------------~v~-~~~~~~~~~~~~--~-------------d~----~i~i~d~~~ 203 (432)
.. .+. .+++.+...++. + |+ .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 11 111 234555433333 2 11 677889999
Q ss_pred CeeeEEEeeccCCcc---------eEEEecCCCcEEEEeecCCCCcEEEEEccCCcee---------ee----eccC-Cc
Q 014007 204 LKLLHQIETIANPKG---------LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK---------FI----MAHD-SR 260 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---------~~----~~~~-~~ 260 (432)
|+..-.++...+.+. .+.+..+|+..-++..+..+|.+.+.|-++++.. .. .... .+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p 360 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP 360 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence 998877765433221 2333346653223334568999999998875542 11 0000 00
Q ss_pred e----------------------------eEEEEcCCCCEEEEEcCC---------------------------------
Q 014007 261 I----------------------------ACFALTQDGQLLATSSTK--------------------------------- 279 (432)
Q Consensus 261 i----------------------------~~~~~sp~~~~l~~~~~d--------------------------------- 279 (432)
+ ..++++|+..+++....+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 440 (527)
T TIGR03075 361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM 440 (527)
T ss_pred ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence 0 125666665555443332
Q ss_pred CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 280 GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 280 g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
|. |.=+|+.+++.+-...... ....+. ..-.+.+++.++.+|.++.+|.++++.+
T Consensus 441 g~-l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 441 GS-LIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred ee-EEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEe
Confidence 34 7778888888877666321 111111 1124556777888999999999999843
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00037 Score=64.82 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=74.9
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCcee-EEEEcCCCCEEEEEcCCCceEEEEECCCCceE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-CFALTQDGQLLATSSTKGTLVRIFNTLDGTLL 294 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~ 294 (432)
.+..+.|+|.-+-++++ ..+|.|.+..+.-.++.++.-|...++ +++|.|||++||+|-.||+ |++.|+.++..+
T Consensus 22 ~i~~~ewnP~~dLiA~~---t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATR---TEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccchhhee---ccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence 34567888877655444 478999999988888888887777777 9999999999999999999 999999999888
Q ss_pred EEEEeCCCcCceEEEEECC
Q 014007 295 QEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 295 ~~~~~~~~~~~i~~~~~s~ 313 (432)
..+... ....|.++-|++
T Consensus 98 ~~~~~s-~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFS-VETDISKGIWDR 115 (665)
T ss_pred eccccc-cccchheeeccc
Confidence 774322 346788888863
No 371
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.55 E-value=0.025 Score=48.98 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=94.9
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE-CCCCceE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN-TLDGTLL 294 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd-~~~~~~~ 294 (432)
.+...+++++++.++++..+.....++++.........+ ....+..-.|++++...+....+.. .+++. ..+++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec--cCCccccccccCCCCEEEEEcCCCc-eEEEEecCCCcce
Confidence 566899999998877665232345555555444333333 2337888899999887777776666 67763 3344332
Q ss_pred -EEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecc
Q 014007 295 -QEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSE 370 (432)
Q Consensus 295 -~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (432)
..+........|..+.+||||..+|... .++.|++--+.....- .+......
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g------------------------~~~~l~~~ 157 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG------------------------VPRRLTGP 157 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC------------------------Ccceeccc
Confidence 2222211112899999999999888765 4578888877654311 00000000
Q ss_pred eeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007 371 WSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS 403 (432)
Q Consensus 371 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 403 (432)
+.........+..++|.+++.+++.+...+.
T Consensus 158 --~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 158 --RRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred --eEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 1111122346889999999888776665443
No 372
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.002 Score=58.94 Aligned_cols=143 Identities=15% Similarity=0.315 Sum_probs=97.4
Q ss_pred CccEEEeC----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe----ecCCCCcEEEEEccCCc---eeee
Q 014007 186 DRIIVVLE----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC----PGLQKGQVRVEHYASKR---TKFI 254 (432)
Q Consensus 186 ~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~d~~i~i~d~~~~~---~~~~ 254 (432)
+..++..+ ..++-.|++.|+.+.+++.+.. |..+.+.|+.+..-+.. -|-.+..|.-||.+-.. +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44445543 4688899999999999987766 77788888765322211 13468889999988532 2222
Q ss_pred ecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 255 MAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 255 ~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
+.| .....|++-..+| ++++|+.+|. ||+||- .++.-++.-.+ ...+|..+..+.||++|++.+ +..+.+-
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGKwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGKWILATC-KTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCcEEEEec-ccEEEEE
Confidence 333 2345566666666 7899999999 999995 55444433322 447899999999999987766 5667777
Q ss_pred EecC
Q 014007 331 NLKV 334 (432)
Q Consensus 331 d~~~ 334 (432)
++.-
T Consensus 498 ~t~~ 501 (644)
T KOG2395|consen 498 DTLI 501 (644)
T ss_pred EEec
Confidence 7653
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00063 Score=63.37 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=67.7
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE-EEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
...|.-+.|+|.-.++|++..+|. |-+..+. .+.+.++..+. ..++ +++|.|||+.||.|-.||+|++-|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~ge-lli~R~n-~qRlwtip~p~--~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGE-LLIHRLN-WQRLWTIPIPG--ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCc-EEEEEec-cceeEeccCCC--CccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 456788999999999999999999 9998876 77888887432 4455 99999999999999999999999999988
Q ss_pred CCCC
Q 014007 337 GSAR 340 (432)
Q Consensus 337 ~~~~ 340 (432)
.+..
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 6654
No 374
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.46 E-value=0.00039 Score=39.68 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=31.8
Q ss_pred eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
...+..|...|.++.|.++++.+++++.||.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445667888999999999999999999999999985
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.44 E-value=0.037 Score=54.02 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=89.4
Q ss_pred CceEEEEEecCccEEEe---------CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec---------
Q 014007 176 SEVRSVKLRRDRIIVVL---------EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG--------- 235 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~~---------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------- 235 (432)
..+.+.+++|+|..++. |. .|.+++.. +.. ..+.. ......-.|+|+|+.++++..+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 35778899999988772 22 45565642 222 33322 2236778999998877665422
Q ss_pred CCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE---EECCCCce-E---EEEEeCCCcCceEE
Q 014007 236 LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI---FNTLDGTL-L---QEVRRGADRAEIYS 308 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v---wd~~~~~~-~---~~~~~~~~~~~i~~ 308 (432)
...+.+.+.+++.+.... .....|..+.|||||..++... ++. |++ -....|.. + ..+... ....+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGK-VYLAVVEQTEDGQYALTNPREVGPG-LGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCE-EEEEEEEeCCCCceeecccEEeecc-cCCcccc
Confidence 123445444555544433 3456799999999999888766 466 776 45445541 1 112211 2234688
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEec
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+.|..++.++ ++..++...+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEe
Confidence 9999999855 55555555556554
No 376
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.00091 Score=66.21 Aligned_cols=96 Identities=18% Similarity=0.270 Sum_probs=71.0
Q ss_pred cCCCCcEEEEEccCCce--eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEEEE
Q 014007 235 GLQKGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLAF 311 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~~~ 311 (432)
|+..|.+...|+.+... ..-..-.++|++++|+.+|++++.|-.+|. |.+||+..++.++.+..+.++ ..+..+.+
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~ 183 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVTGVIFVGR 183 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccceEEEEEE
Confidence 34678888888877422 222334678999999999999999999999 999999999999888764432 23444555
Q ss_pred CCCCCEEEEEeCCCeEEEEEec
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
..++..++++...|. +|.+.
T Consensus 184 t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 184 TSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eCCCcEEEEccCCCc--eEEEE
Confidence 556667888877776 66654
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.43 E-value=0.00067 Score=38.65 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=31.8
Q ss_pred ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
++...+.. |...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG--HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe--cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44555653 557899999999999999999999999996
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.40 E-value=0.031 Score=46.76 Aligned_cols=113 Identities=15% Similarity=0.133 Sum_probs=81.7
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
+.+.++.+.+++ .|+..+.+.-.|..++.+.--..-...|.+-+.- -|++++.|+..|. +++.+.++|.....+..
T Consensus 16 LVV~~dskT~v~--igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~-lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 16 LVVCNDSKTLVV--IGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGG-LYFLCVKTGSQIWNFVI 91 (354)
T ss_pred EEEecCCceEEE--EecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCc-EEEEEecchhheeeeee
Confidence 344455544433 3567888888888887766544445555554443 5778999999999 99999999988877774
Q ss_pred CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 300 GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 300 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.. .--......+++..+..|+.|+..+..|.++..++
T Consensus 92 ~~--~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 92 LE--TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred hh--hhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 21 22233456679999999999999999999988754
No 379
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.39 E-value=0.069 Score=45.61 Aligned_cols=184 Identities=9% Similarity=0.071 Sum_probs=110.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGT-DHG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
...-...+.|..+|.++-+.+ -+. |+.+|+++++......+. ...---.+....+..+.++--. +...+
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~--~~~FgEGit~~~d~l~qLTWk~------~~~f~ 114 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP--PRYFGEGITILGDKLYQLTWKE------GTGFV 114 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T--TT--EEEEEEETTEEEEEESSS------SEEEE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC--ccccceeEEEECCEEEEEEecC------CeEEE
Confidence 344556788877787766655 222 999999998877666665 4444456666788888888765 89999
Q ss_pred EeCCCCceeEEeecCCceEEEEEecCccEEEeCC--eEEEEEcCCCeeeEEEeeccC--C---cceEEEecCCCcEEEEe
Q 014007 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLHQIETIAN--P---KGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 233 (432)
||..+.+.+.++...+.=+.++. .+..++.+|| .|+.+|..+.+....+....+ + ++.+.+. +| . +.|.
T Consensus 115 yd~~tl~~~~~~~y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G-~-IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPYPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG-K-IYAN 190 (264)
T ss_dssp EETTTTEEEEEEE-SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT-E-EEEE
T ss_pred EccccceEEEEEecCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC-E-EEEE
Confidence 99999999999997777788883 2334555766 789999888777766654322 2 2234443 22 2 2222
Q ss_pred ecCCCCcEEEEEccCCceeeee----------------ccCCceeEEEEcCCCCEEEEEcCCC
Q 014007 234 PGLQKGQVRVEHYASKRTKFIM----------------AHDSRIACFALTQDGQLLATSSTKG 280 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~~~~----------------~~~~~i~~~~~sp~~~~l~~~~~dg 280 (432)
--....|...|..++.+.... ....-.+.|++.|....|...+..-
T Consensus 191 -VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~W 252 (264)
T PF05096_consen 191 -VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLW 252 (264)
T ss_dssp -ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-
T ss_pred -eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCC
Confidence 123455666666665543221 1134578999998776665555443
No 380
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.073 Score=45.34 Aligned_cols=240 Identities=17% Similarity=0.134 Sum_probs=133.1
Q ss_pred CCeEEEEEcCCCC-EEEEEcC-Cc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 86 PTLLHISFNQDHG-CFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 86 ~~v~~~~~s~~~~-~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
..-..|+|+|... -++.+-. ++ ..++|.+..+......-. ...--.-.-.|++++.+|.....|..-..|.|-|||
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd 146 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-EGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD 146 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-cCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence 3445678888654 4556653 33 788888776654322211 111112234589999999887776444458999999
Q ss_pred CCCC-ceeEEee-cCCceEEEEEecCccEEE-eCCeEEEE--------------------EcCCCeeeEEEe----eccC
Q 014007 163 DHQS-RCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVY--------------------NFADLKLLHQIE----TIAN 215 (432)
Q Consensus 163 ~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~--------------------d~~~~~~~~~~~----~~~~ 215 (432)
...+ +.+.++. |.-....+.+.+||+.++ .+|-|... |..+|+.+.+.. .+..
T Consensus 147 ~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 147 AREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred cccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 8754 5566676 777778899999999888 46655544 323333332211 1122
Q ss_pred CcceEEEecCCCcEEEEee--cC-CCCcEEEEE-ccCCceeeee-------ccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007 216 PKGLCAVSQGVGSLVLVCP--GL-QKGQVRVEH-YASKRTKFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVR 284 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~--g~-~d~~i~i~d-~~~~~~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~ 284 (432)
.++.++..+||. +++.|- |. .|---.+=- ..++.+..+. .....|-+|+.+.+..+++..+-.|+...
T Consensus 227 SiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v 305 (366)
T COG3490 227 SIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV 305 (366)
T ss_pred ceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence 344455555543 122220 00 000000000 0111111111 22346778888876666666666665478
Q ss_pred EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+||..+|..+..-.. .....++- ...-++..+.+|.+.++.-.
T Consensus 306 i~da~tG~vv~~a~l----~daaGva~--~~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 306 IWDAATGAVVSEAAL----PDAAGVAA--AKGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred EEEcCCCcEEecccc----ccccccee--ccCceEEecCCceEEecccc
Confidence 999999988755432 12233333 33446666678888888443
No 381
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.081 Score=45.39 Aligned_cols=162 Identities=8% Similarity=0.089 Sum_probs=104.9
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNF 201 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~ 201 (432)
+-...+.++.|+|+...+++.... ..-.++=..+|+.++++. .-.....+.+..+++++++ ++.+.++.+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~-----p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNK-----PAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcceEEEecCC-----CceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 444558999999998777766655 566666667899999988 4456677889999999996 567777776
Q ss_pred CCCeeeEE-------Eee--c-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeecc-------CCc
Q 014007 202 ADLKLLHQ-------IET--I-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAH-------DSR 260 (432)
Q Consensus 202 ~~~~~~~~-------~~~--~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~-------~~~ 260 (432)
........ +.. + ......++|.+....++++= +..-+.||.+.... ......+ -..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---ERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---ccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 65422111 111 1 23445789999988887764 56667777665422 1111111 235
Q ss_pred eeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 261 IACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 261 i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
|.++.|++ .+.+|+-+.+++. +.-.|. +|..+..+.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~-l~Evd~-~G~~~~~ls 271 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRR-LLEVDL-SGEVIELLS 271 (316)
T ss_pred cccceecCCCCcEEEEecCCce-EEEEec-CCCeeeeEE
Confidence 77788887 5566666777776 777774 555444443
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.074 Score=45.60 Aligned_cols=183 Identities=8% Similarity=0.032 Sum_probs=110.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
..+-...|.++.|+|+.+.|.+..++. -.|+-...++......+. .-...-.+.|..++.++++-.++ +.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~--g~~DpE~Ieyig~n~fvi~dER~-----~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT--GFSDPETIEYIGGNQFVIVDERD-----RALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc--ccCChhHeEEecCCEEEEEehhc-----ceEE
Confidence 344455599999999999887777666 444443455555444444 34445567888999999999988 8999
Q ss_pred EEeCCCCceeE-----Eee-----c-CCceEEEEEecCccEEE-e--CCeEEEEEcCCCe-e--eEEEe-------eccC
Q 014007 160 IWDDHQSRCIG-----ELS-----F-RSEVRSVKLRRDRIIVV-L--EQKIFVYNFADLK-L--LHQIE-------TIAN 215 (432)
Q Consensus 160 iwd~~~~~~~~-----~~~-----~-~~~v~~~~~~~~~~~~~-~--d~~i~i~d~~~~~-~--~~~~~-------~~~~ 215 (432)
++.+..+..+. .+. + +....+++|.+....+. + .+-+.||.+.... . ++... ..-.
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 88876553211 111 2 45678899999765544 3 3445555443221 1 11100 1123
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---------CceeEEEEcCCCCE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQL 272 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~sp~~~~ 272 (432)
.+..+.+.+..+.+++.+ .+++.+.-.|.....+..+.-+. .....|+..++|.+
T Consensus 234 DvSgl~~~~~~~~LLVLS--~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 234 DVSGLEFNAITNSLLVLS--DESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred ccccceecCCCCcEEEEe--cCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 456678888777777664 47788877887776544332221 12345666666653
No 383
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.34 E-value=0.066 Score=44.19 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=113.1
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCc-ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEEee
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS 173 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~ 173 (432)
.+|.+-- .+.|.-||+...+ .+...++... ...+.-+.-.++...+..|.. -.|--||.. .....+++.
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~-v~ra~ie~p~~ag~ilpv~~~~q~~~v~~G~k------f~i~nwd~~~~~a~v~~t~~ 100 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNK-VYRAKIEGPPSAGFILPVEGGPQEFAVGCGSK------FVIVNWDGVSESAKVYRTLF 100 (310)
T ss_pred eEEEEEeccCceehhhhhhhh-eEEEEEecCcceeEEEEecCCCceEEEeecce------EEEEEcccccceeeeeeecc
Confidence 3444444 3447779987644 3333443111 111222222233333333332 355667732 223333321
Q ss_pred ------cCCceEEEEEecCccEEEe------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 174 ------FRSEVRSVKLRRDRIIVVL------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 174 ------~~~~v~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
.....+.-..+|+|++.+. .|.++.|-.. ..+..+...-.--+.++|+.+.+.++++ .
T Consensus 101 ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~i--D 176 (310)
T KOG4499|consen 101 EVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYI--D 176 (310)
T ss_pred ccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEE--c
Confidence 2445667778899998661 3556666542 2222232222333467888887777765 3
Q ss_pred CCCCcEEEEEcc--CCce------eeeec----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc
Q 014007 236 LQKGQVRVEHYA--SKRT------KFIMA----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR 303 (432)
Q Consensus 236 ~~d~~i~i~d~~--~~~~------~~~~~----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~ 303 (432)
+.+-.|.-||.+ ++.+ ..++. ..-..-.+++..+|++.++.-..++ |..+|..+|+.+.++... .
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~-V~~~dp~tGK~L~eiklP--t 253 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT-VQKVDPTTGKILLEIKLP--T 253 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE-EEEECCCCCcEEEEEEcC--C
Confidence 567788778844 3221 11111 1112334566778888888888888 999999999999999964 4
Q ss_pred CceEEEEECC
Q 014007 304 AEIYSLAFSS 313 (432)
Q Consensus 304 ~~i~~~~~s~ 313 (432)
..|++++|--
T Consensus 254 ~qitsccFgG 263 (310)
T KOG4499|consen 254 PQITSCCFGG 263 (310)
T ss_pred CceEEEEecC
Confidence 6899999954
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.28 E-value=0.24 Score=49.51 Aligned_cols=226 Identities=13% Similarity=0.189 Sum_probs=136.9
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CC--------CCCCCCeEEEEeCCCCcee
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PD--------PQYPLNKVMIWDDHQSRCI 169 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d--------~~~~~~~v~iwd~~~~~~~ 169 (432)
.|+.+..+.+++..++.-+....+++. -......+++.+..+.+...+ +. +.+.-..++++|-++-+.+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRTVP--LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceeeec--CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 566676777888888776665555554 344455666666433333222 11 1122245788887776665
Q ss_pred EEee--cCC---ceEEEEEecC-ccEEEe-------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEe-cCCCcE
Q 014007 170 GELS--FRS---EVRSVKLRRD-RIIVVL-------------EQKIFVYNFADLKLLHQIETIANPKGLCAVS-QGVGSL 229 (432)
Q Consensus 170 ~~~~--~~~---~v~~~~~~~~-~~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 229 (432)
...+ ... .|.+..|..| +.+++. .|.|.+|....++.++.+..+.-.-...++. .+|+
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngk-- 841 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGK-- 841 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCe--
Confidence 5544 223 3444557776 554441 5788898887744444432221111122332 2332
Q ss_pred EEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC--CCceEEEEEeCCCcCce
Q 014007 230 VLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DGTLLQEVRRGADRAEI 306 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~--~~~~~~~~~~~~~~~~i 306 (432)
++|. -+..|++|++..+ +++.-..+..++..+...-.|..+++|..-+. +.+.-.+ .|... .+...-++.++
T Consensus 842 llA~---In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~S-itll~y~~~eg~f~-evArD~~p~Wm 916 (1096)
T KOG1897|consen 842 LLAG---INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRS-ITLLQYKGDEGNFE-EVARDYNPNWM 916 (1096)
T ss_pred EEEe---cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccce-EEEEEEeccCCceE-EeehhhCccce
Confidence 4444 5689999999986 55555678888999999889999999998887 7665444 33343 33333366788
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+++.+-.+. .++.+..+|.+++-..++
T Consensus 917 taveil~~d-~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 917 TAVEILDDD-TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred eeEEEecCc-eEEeecccccEEEEEecC
Confidence 888886544 455666788888776654
No 385
>PRK10115 protease 2; Provisional
Probab=97.27 E-value=0.25 Score=49.55 Aligned_cols=241 Identities=10% Similarity=0.046 Sum_probs=123.4
Q ss_pred CCeEEEEEcCCCCEEEEEcCC-c-----EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC-CCCCeE
Q 014007 86 PTLLHISFNQDHGCFAAGTDH-G-----FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-YPLNKV 158 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~~-~-----i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-~~~~~v 158 (432)
-.+..+.++|||++|+.+.|. | |++.++.++... ...+. .. . ..+.|.+++..|+-...++. ..+..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~--~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLD--NV-E-PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-Ccccc--Cc-c-eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 347778999999999887632 2 777888766422 12222 11 1 34778776644333222211 122689
Q ss_pred EEEeCCCC--ceeEEee-cCCceE-EEEEecCccEEEe------CCeEEEEEcC--CCeeeEEEeeccCCcceEEEecCC
Q 014007 159 MIWDDHQS--RCIGELS-FRSEVR-SVKLRRDRIIVVL------EQKIFVYNFA--DLKLLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 159 ~iwd~~~~--~~~~~~~-~~~~v~-~~~~~~~~~~~~~------d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~ 226 (432)
+.+++.++ +-...+. ...... .+..+.++.+++. ++.+.+++.. ++.....+ .....+. ..+...+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~ 279 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHE-YSLDHYQ 279 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCE-EEEEeCC
Confidence 99999988 3334444 222233 3333447776552 5688998843 33322222 2222222 2233334
Q ss_pred CcEEEEee-cCCCCcEEEEEccC-Cceeeeecc-C-CceeEEEEcCCCCEEEEEcCCCc-eEEEEECCCCceEEEEEeCC
Q 014007 227 GSLVLVCP-GLQKGQVRVEHYAS-KRTKFIMAH-D-SRIACFALTQDGQLLATSSTKGT-LVRIFNTLDGTLLQEVRRGA 301 (432)
Q Consensus 227 ~~~~~~~~-g~~d~~i~i~d~~~-~~~~~~~~~-~-~~i~~~~~sp~~~~l~~~~~dg~-~i~vwd~~~~~~~~~~~~~~ 301 (432)
+.+++.+. +.....|...++.. .....+..+ . ..|..+.+. .+.++++...++. .++++|...+ .+..+...
T Consensus 280 ~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~- 356 (686)
T PRK10115 280 HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFD- 356 (686)
T ss_pred CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCC-
Confidence 56666552 22333444445542 333455555 3 368888887 3345555555664 1445554333 34444311
Q ss_pred CcCceEEEEEC--CCCC-EEEEEe---CCCeEEEEEecCCC
Q 014007 302 DRAEIYSLAFS--SNAQ-WLAVSS---DKGTVHVFNLKVNS 336 (432)
Q Consensus 302 ~~~~i~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 336 (432)
....+..+.++ +++. ++++.+ .-+.++.+|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 357 DPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 12233334444 3433 444433 45778888887754
No 386
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.18 E-value=0.034 Score=40.34 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=59.9
Q ss_pred EEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGL 219 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (432)
..|+.|+.| ..|++|+ ..+.+.++...+.|..+.-...+++.+ .+|+|-+|+- ...+..++....++..
T Consensus 16 ~eLlvGs~D-----~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~~ 86 (111)
T PF14783_consen 16 NELLVGSDD-----FEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQVTSM 86 (111)
T ss_pred ceEEEecCC-----cEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCCeEEE
Confidence 567777777 9999997 457888888888999998888887776 3899999984 3344444444444444
Q ss_pred EEEecCCCcEE-EEeecCCCCcEE
Q 014007 220 CAVSQGVGSLV-LVCPGLQKGQVR 242 (432)
Q Consensus 220 ~~~~~~~~~~~-~~~~g~~d~~i~ 242 (432)
..+..+++... ++ .|-.+|.|-
T Consensus 87 ~~~D~~gdG~~eLI-~GwsnGkve 109 (111)
T PF14783_consen 87 AFYDINGDGVPELI-VGWSNGKVE 109 (111)
T ss_pred EEEcCCCCCceEEE-EEecCCeEE
Confidence 44455443221 22 244667654
No 387
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.031 Score=51.60 Aligned_cols=144 Identities=11% Similarity=0.090 Sum_probs=88.1
Q ss_pred cEEEEeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCE-------EEEEcCCCceEEEEECCCCc--eEEEE
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQL-------LATSSTKGTLVRIFNTLDGT--LLQEV 297 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~-------l~~~~~dg~~i~vwd~~~~~--~~~~~ 297 (432)
.+++. .|.....++-.|+..+++.. +.-+. .|.-+.+.|+.+. -+.|-.|.. |.-||.+-.. .+...
T Consensus 346 nlil~-~~~~~~~l~klDIE~GKIVeEWk~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 346 NLILM-DGGEQDKLYKLDIERGKIVEEWKFED-DINMVDITPDFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ceEee-CCCCcCcceeeecccceeeeEeeccC-CcceeeccCCcchhcccccccEEeecCCc-eEEecccccCcceeeee
Confidence 34444 34466777778888766554 44444 3777888886532 134555666 8999987322 22222
Q ss_pred EeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007 298 RRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ 375 (432)
Q Consensus 298 ~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (432)
..+ .......|.+-..+| ++++|+.+|.|++||- .++..++ .
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKT----------------------------------A 466 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKT----------------------------------A 466 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhh----------------------------------c
Confidence 211 111334555555454 7899999999999998 4442221 1
Q ss_pred EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 376 FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 376 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.+-...|..|..+.||++|+..| +.++.+-+...
T Consensus 467 lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 467 LPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTLI 501 (644)
T ss_pred ccccCCceeeEEeeccCcEEEEec-ccEEEEEEEec
Confidence 334445788999999999998666 55666655544
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.06 E-value=0.24 Score=45.37 Aligned_cols=189 Identities=13% Similarity=0.143 Sum_probs=86.7
Q ss_pred eEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee----cC----CceEEEEEecCccEEEe---------CCeEEEE
Q 014007 141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS----FR----SEVRSVKLRRDRIIVVL---------EQKIFVY 199 (432)
Q Consensus 141 ~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~----~~----~~v~~~~~~~~~~~~~~---------d~~i~i~ 199 (432)
..+++.+-.. +.|+|.|+.+. +..+.++ +. .....+..-|+|.++++ -|.+.++
T Consensus 88 r~Li~PgL~S-----srIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRS-----SRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT-------EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeecc-----CcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 4455556565 89999998853 3444443 11 22334455578866663 2468888
Q ss_pred EcCCCeeeEEEeeccCC---cceEEEecCCCcEEEEee-------------------cCCCCcEEEEEccCCceee-eec
Q 014007 200 NFADLKLLHQIETIANP---KGLCAVSQGVGSLVLVCP-------------------GLQKGQVRVEHYASKRTKF-IMA 256 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------------g~~d~~i~i~d~~~~~~~~-~~~ 256 (432)
|-++.+.....+..... -..+.+.|..+ +++++ +.....+.+||+...+... +.-
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 98877777666543321 12345555443 23332 1124789999999966554 332
Q ss_pred c-C-CceeEEEEcC--CCCE-EEEEcCCCceEEEEEC-CCCc----eEEEEEeCCC---------------cCceEEEEE
Q 014007 257 H-D-SRIACFALTQ--DGQL-LATSSTKGTLVRIFNT-LDGT----LLQEVRRGAD---------------RAEIYSLAF 311 (432)
Q Consensus 257 ~-~-~~i~~~~~sp--~~~~-l~~~~~dg~~i~vwd~-~~~~----~~~~~~~~~~---------------~~~i~~~~~ 311 (432)
- + .....|.|.. +..+ ++.+...++ |..|-- ..++ .+..+..... ..-|+.|..
T Consensus 241 g~~g~~pLEvRflH~P~~~~gFvg~aLss~-i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 241 GEEGQMPLEVRFLHDPDANYGFVGCALSSS-IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp -TTEEEEEEEEE-SSTT--EEEEEEE--EE-EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCCCCceEEEEecCCCCccceEEEEeccce-EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 1 2 3456777754 3333 333334455 555432 3332 2222221100 234799999
Q ss_pred CCCCCEEEEEe-CCCeEEEEEecCCCC
Q 014007 312 SSNAQWLAVSS-DKGTVHVFNLKVNSG 337 (432)
Q Consensus 312 s~~~~~l~~~~-~dg~i~iwd~~~~~~ 337 (432)
|.|.++|...+ .+|.|+.||+.....
T Consensus 320 SlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 320 SLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp -TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 99999998777 799999999998763
No 389
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.01 E-value=0.45 Score=47.72 Aligned_cols=278 Identities=12% Similarity=0.124 Sum_probs=135.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEE--EcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIY--NCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~i 160 (432)
+..|.-..|-.|+.+|.++..+| +.-| |..++...-.+... -+..++.=-.|+.. ..++.++++ .-..+
T Consensus 583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~-lGt~P~~Lr~f~sk~~t~vfa~sd------rP~vi 655 (1096)
T KOG1897|consen 583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT-LGTQPISLRTFSSKSRTAVFALSD------RPTVI 655 (1096)
T ss_pred chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccc-cCCCCcEEEEEeeCCceEEEEeCC------CCEEE
Confidence 45666667777788888888666 4444 44444433222111 12233333334332 334444433 33444
Q ss_pred EeCCCCceeEEeecCCceEEE-EEe----cCccEEEeCCeEEEEEcCCCee--eEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 161 WDDHQSRCIGELSFRSEVRSV-KLR----RDRIIVVLEQKIFVYNFADLKL--LHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 161 wd~~~~~~~~~~~~~~~v~~~-~~~----~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
|. .+++.+..--.-..+..+ .|+ ||+...+..+.+++..+..-+. ++++..+. ..+.+++.+... .+.+.
T Consensus 656 Y~-~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~-~prrI~~q~~sl-~~~v~ 732 (1096)
T KOG1897|consen 656 YS-SNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGE-SPRRICYQESSL-TFGVL 732 (1096)
T ss_pred Ee-cCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCC-ChhheEecccce-EEEEE
Confidence 44 233332221111111111 122 3445555677788777665322 22332222 233455555222 22222
Q ss_pred ecC---------CC---CcEEEEEccCCceeeeeccC-------CceeEEEEcCC-CCEEEEEcC----------CCceE
Q 014007 234 PGL---------QK---GQVRVEHYASKRTKFIMAHD-------SRIACFALTQD-GQLLATSST----------KGTLV 283 (432)
Q Consensus 234 ~g~---------~d---~~i~i~d~~~~~~~~~~~~~-------~~i~~~~~sp~-~~~l~~~~~----------dg~~i 283 (432)
+.. .. ..++++|-++-+ .+..|+ ..|.++.|..| +.++++|.. .|. |
T Consensus 733 s~r~e~~~~~~~ee~~~s~l~vlD~nTf~--vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR-I 809 (1096)
T KOG1897|consen 733 SNRIESSAEYYGEEYEVSFLRVLDQNTFE--VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR-I 809 (1096)
T ss_pred ecccccchhhcCCcceEEEEEEecCCcee--EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce-E
Confidence 110 11 234455544422 222222 23555668777 677777753 466 8
Q ss_pred EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
.+|.+..++.++......-++.+.++.- -+|++||.- ...|++|+..+.+.+...
T Consensus 810 ivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e---------------------- 864 (1096)
T KOG1897|consen 810 IVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIE---------------------- 864 (1096)
T ss_pred EEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhh----------------------
Confidence 8888877544444433223455666543 267777655 568999999988643321
Q ss_pred cceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCC
Q 014007 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVN 413 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~ 413 (432)
..+...+.++...-.|..+++|.-=+++.+..+...+
T Consensus 865 -------------~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 865 -------------CNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred -------------hcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 1223345555555566666666666666555554443
No 390
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.00 E-value=0.16 Score=46.91 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=98.4
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeeccc-----CcceeEEEEeee-----CC---eEEE
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFR-----CN---ILAL 144 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~-----~~---~~~~ 144 (432)
.......+.|++++.|. =-++|+|.++| +.|.|+.....++...+.. .....+.++.|. .| ...+
T Consensus 80 ~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred hheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 45556689999999984 45899999666 9999998777777655542 234456666664 22 3566
Q ss_pred ecCCCCCCCCCCeEEEEeCC--C-Cc----eeEEe-ecCCceEEEE-EecC----------------------ccEEE-e
Q 014007 145 VGGGPDPQYPLNKVMIWDDH--Q-SR----CIGEL-SFRSEVRSVK-LRRD----------------------RIIVV-L 192 (432)
Q Consensus 145 ~s~~~d~~~~~~~v~iwd~~--~-~~----~~~~~-~~~~~v~~~~-~~~~----------------------~~~~~-~ 192 (432)
..|... |.+.+|.+. . +. ..... .+.++|..+. ++.+ +.+++ +
T Consensus 159 ~vGTn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 159 LVGTNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred EEEeCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 666666 999999764 1 21 12222 2556666665 3322 12222 5
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEec---CCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc----CCceeEE
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ---GVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACF 264 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~----~~~i~~~ 264 (432)
+..++++...+.+..+......-....+.+.+ ......+++- ..+|.+++|.+.. +.+..+.-. ...+...
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l-~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCL-FNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEE-ETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEE-ECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 88999999888776655432111222333421 1122223321 3789999999987 444443322 2234456
Q ss_pred EEcCCCCEEEEEcCC
Q 014007 265 ALTQDGQLLATSSTK 279 (432)
Q Consensus 265 ~~sp~~~~l~~~~~d 279 (432)
.++++|..++-.+..
T Consensus 313 sis~~Gdi~~~~gps 327 (395)
T PF08596_consen 313 SISRNGDIFYWTGPS 327 (395)
T ss_dssp EE-TTS-EEEE-SSS
T ss_pred EECCCCCEEEEeCcc
Confidence 667788766555443
No 391
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.91 E-value=0.0032 Score=37.98 Aligned_cols=31 Identities=6% Similarity=0.071 Sum_probs=28.2
Q ss_pred CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
..|..++|+|...+||.++.||.|.+|+++-
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 4689999999999999999999999999843
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.90 E-value=0.37 Score=47.18 Aligned_cols=219 Identities=11% Similarity=0.075 Sum_probs=101.6
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE--EeecCCceEEEEEec
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--ELSFRSEVRSVKLRR 185 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~ 185 (432)
+..||..+.+-.....+. ....-.+.+...+..++++|..........+..||..++.-.. .+.....-.+++...
T Consensus 274 v~~yd~~~~~W~~l~~mp--~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 274 ILVYNINTMEYSVISTIP--NHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred EEEEeCCCCeEEECCCCC--ccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 667887665544333332 1111123333445555555532111112568889987764221 111111112233333
Q ss_pred CccEEEe--C-----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC---------------------
Q 014007 186 DRIIVVL--E-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ--------------------- 237 (432)
Q Consensus 186 ~~~~~~~--d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------- 237 (432)
+..+++. + ..+..||..+.+-.. +.....+....+...-++.++++ +|..
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~~r~~~~~~~~~g~IYvi-GG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPIALSSYGMCVLDQYIYII-GGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCcccccccEEEECCEEEEE-eCCCccccccccccccccccccccc
Confidence 3333332 2 248889987653221 11111111111222223455544 3422
Q ss_pred -CCcEEEEEccCCceeeeecc-CCce-eEEEEcCCCCEEEEEcCCC------ceEEEEECCC-Cce--EEEEEeCCCcCc
Q 014007 238 -KGQVRVEHYASKRTKFIMAH-DSRI-ACFALTQDGQLLATSSTKG------TLVRIFNTLD-GTL--LQEVRRGADRAE 305 (432)
Q Consensus 238 -d~~i~i~d~~~~~~~~~~~~-~~~i-~~~~~sp~~~~l~~~~~dg------~~i~vwd~~~-~~~--~~~~~~~~~~~~ 305 (432)
-..+..||..+..-..+... .... .+++ .-+|++.+.|+.++ . +..||..+ .+- +..+.. ....
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~-ve~Ydp~~~~~W~~~~~m~~--~r~~ 505 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTC-IFRYNTNTYNGWELITTTES--RLSA 505 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCcccee-EEEecCCCCCCeeEccccCc--cccc
Confidence 13466788776443322211 1111 1122 22677777777542 3 67899876 333 222221 1122
Q ss_pred eEEEEECCCCCEEEEEeCCC--eEEEEEecCCC
Q 014007 306 IYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNS 336 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~ 336 (432)
...+.+ +|+..++|+.+| .+..||..+.+
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 222233 788889999888 78888888876
No 393
>PRK10115 protease 2; Provisional
Probab=96.73 E-value=0.78 Score=46.18 Aligned_cols=203 Identities=7% Similarity=-0.057 Sum_probs=106.1
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C-----CeEEEE
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E-----QKIFVY 199 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d-----~~i~i~ 199 (432)
...+..+.++|++..++-+.+........|++.|+.+|+.+...-.... ..++|.+|+..++. + ..|+.+
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3556677889998776643222111125699999988864322211111 56899998876552 1 368888
Q ss_pred EcCCC--eeeEEEeeccCCcceEEE-ecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEE
Q 014007 200 NFADL--KLLHQIETIANPKGLCAV-SQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 200 d~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (432)
++.++ +....+...........+ +.+++.+++.+....++.+.+++... .....+..+...+..-..+..+.+++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~ 284 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYL 284 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEE
Confidence 88887 333334433333332233 34777777666666778899998532 33233333333222211233333333
Q ss_pred EEcCCC-c-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 275 TSSTKG-T-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 275 ~~~~dg-~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
....++ . .|...++.+......+..+.....+..+.+. .+.++++...+|.-+++-+.
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 333222 2 0433444421222333322122468888887 33555666677776666554
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=0.0035 Score=51.26 Aligned_cols=136 Identities=14% Similarity=0.097 Sum_probs=75.9
Q ss_pred CCCCcEEEEEccCCcee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-ceEEEEEeCCCcCceEEEEEC
Q 014007 236 LQKGQVRVEHYASKRTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-TLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s 312 (432)
+.+|.|.-++++..+.. ...-|... .....-+..+++|+.+|. |++|..... .....+... .+.....+.-.
T Consensus 37 sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~ 111 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSG-EESIDLGIPNG 111 (238)
T ss_pred cCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccce-EEEecCCccchHHHhhhcc-cccceeccccc
Confidence 46788877777653221 11112222 111223567899999999 999986521 111111111 11222333333
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQ 391 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~ 391 (432)
.++.+.++++.||.|+.|++.-.+.+. ....|. ..+.....+..
T Consensus 112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g-----------------------------------~~g~h~~~~~e~~ivv~s 156 (238)
T KOG2444|consen 112 RDSSLGCVGAQDGRIRACNIKPNKVLG-----------------------------------YVGQHNFESGEELIVVGS 156 (238)
T ss_pred cccceeEEeccCCceeeeccccCceee-----------------------------------eeccccCCCcceeEEecC
Confidence 455678889999999999998776321 122233 33444445555
Q ss_pred CCEEEEE--ecCCeEEEEEecC
Q 014007 392 KNTVVIL--GMDGSFYRCQFDP 411 (432)
Q Consensus 392 ~~~l~~~--~~dg~v~iw~~~~ 411 (432)
+++|+++ +.|..++.|++..
T Consensus 157 d~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 157 DEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceEEeeccccchhhhhcchhh
Confidence 6666666 6777777777654
No 395
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.66 E-value=0.0071 Score=36.47 Aligned_cols=34 Identities=21% Similarity=0.410 Sum_probs=30.1
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~ 293 (432)
...|.+++|+|...+||.++.+|. |.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~-v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE-VLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe-EEEEEC-CCcC
Confidence 456999999999999999999999 999998 5554
No 396
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.64 E-value=0.37 Score=41.28 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=114.5
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCc--eEEEEEecCccEEEe--CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSE--VRSVKLRRDRIIVVL--EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~--d~~i~ 197 (432)
..++.....-.-.+.|..++.++-+.+.. ....|+.+|+.+++.+........ -.+++...|..+..+ ++...
T Consensus 37 ~~ypHd~~aFTQGL~~~~~g~LyESTG~y---G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 37 ETYPHDPTAFTQGLEFLDDGTLYESTGLY---GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEE--TT-EEEEEEEEETTEEEEEECST---TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEE
T ss_pred EECCCCCcccCccEEecCCCEEEEeCCCC---CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEE
Confidence 44442233444567775666666555543 224799999999998877774333 345666667666664 89999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeee--ccC---CceeEEEEcCCCC
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIM--AHD---SRIACFALTQDGQ 271 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~--~~~---~~i~~~~~sp~~~ 271 (432)
+||..+.+.+.++.-.. . ..-+..+++.+++ +.| ...++++|..+ .....+. ... ..++.+.|- +|.
T Consensus 114 ~yd~~tl~~~~~~~y~~-E--GWGLt~dg~~Li~-SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPG-E--GWGLTSDGKRLIM-SDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEETTTTEEEEEEE-SS-S----EEEECSSCEEE-E-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEccccceEEEEEecCC-c--ceEEEcCCCEEEE-ECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 99999998888876432 2 2334467776654 323 46788888766 2222222 222 245566665 676
Q ss_pred EEEEEcCCCceEEEEECCCCceEEEEEeCC-------------CcCceEEEEECCCCCEEEEEe
Q 014007 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~ 322 (432)
+.|=.=.... |...|..+|+.+..+.... ...-.+.|++.|....|...+
T Consensus 187 IyANVW~td~-I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDR-IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSE-EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCe-EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 6665555666 8888999999988875310 124589999988766555444
No 397
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.014 Score=58.35 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 269 ~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
.+-.++.|+..|. |-.+|+... +-.-..+....++|++++|+.+|+.++.|-.+|.|.+||+.+++.++
T Consensus 98 ~~~~ivi~Ts~gh-vl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGH-VLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred eeeeEEEEcCchh-hhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 4557888888888 888887543 11112222234789999999999999999999999999999987543
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.34 E-value=0.19 Score=46.56 Aligned_cols=139 Identities=12% Similarity=0.211 Sum_probs=86.3
Q ss_pred CccEEEeCC----eEEEEEcCCCeeeEEEeeccCCcceEEEecCCC-------cEEEEeecCCCCcEEEEEccC--Ccee
Q 014007 186 DRIIVVLEQ----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-------SLVLVCPGLQKGQVRVEHYAS--KRTK 252 (432)
Q Consensus 186 ~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~d~~i~i~d~~~--~~~~ 252 (432)
+..++..|| .++-.|++.|+.+..+..+... .+.+.|..+ ..++ |-.+..|.-.|.+. .++.
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv---GlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV---GLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE---eecccceEEecccccCCcee
Confidence 445555443 6888899999999998876654 567776542 2222 22456665566554 2222
Q ss_pred eeeccCCceeEEEEcC----CCCEEEEEcCCCceEEEEECCCCceEE-EEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007 253 FIMAHDSRIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQ-EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 253 ~~~~~~~~i~~~~~sp----~~~~l~~~~~dg~~i~vwd~~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
. ......++.-.|+. ...++|+++..|. |++||- -|..-+ .+.+ ....|..+..+.+|+++++.+ ...+
T Consensus 553 v-~esKdY~tKn~Fss~~tTesGyIa~as~kGD-irLyDR-ig~rAKtalP~--lG~aIk~idvta~Gk~ilaTC-k~yl 626 (776)
T COG5167 553 V-VESKDYKTKNKFSSGMTTESGYIAAASRKGD-IRLYDR-IGKRAKTALPG--LGDAIKHIDVTANGKHILATC-KNYL 626 (776)
T ss_pred e-eeehhccccccccccccccCceEEEecCCCc-eeeehh-hcchhhhcCcc--cccceeeeEeecCCcEEEEee-cceE
Confidence 2 11222223223332 3458999999999 999994 443332 3332 336899999999999988776 4568
Q ss_pred EEEEecCC
Q 014007 328 HVFNLKVN 335 (432)
Q Consensus 328 ~iwd~~~~ 335 (432)
.+-|+.-.
T Consensus 627 lL~d~~ik 634 (776)
T COG5167 627 LLTDVPIK 634 (776)
T ss_pred EEEecccc
Confidence 88887643
No 399
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.11 E-value=1.3 Score=43.47 Aligned_cols=191 Identities=15% Similarity=0.143 Sum_probs=98.5
Q ss_pred eEEEecCCCCC-CCCCCeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEE--eC------CeEEEEEcCCCeeeEE
Q 014007 141 ILALVGGGPDP-QYPLNKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVV--LE------QKIFVYNFADLKLLHQ 209 (432)
Q Consensus 141 ~~~~~s~~~d~-~~~~~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~--~d------~~i~i~d~~~~~~~~~ 209 (432)
+..++.|+..+ ......+..||..+++-... +.....-.+++...+..+++ .| ..+..||..+.+-..
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~- 363 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP- 363 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-
Confidence 34444555442 12236788999887743332 23444456666666655655 24 368888887765322
Q ss_pred EeeccCCcceEEEecCCCcEEEEeecCCCC-----cEEEEEccCCceeeeeccCCceeEEEE-cCCCCEEEEEcCCCce-
Q 014007 210 IETIANPKGLCAVSQGVGSLVLVCPGLQKG-----QVRVEHYASKRTKFIMAHDSRIACFAL-TQDGQLLATSSTKGTL- 282 (432)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-----~i~i~d~~~~~~~~~~~~~~~i~~~~~-sp~~~~l~~~~~dg~~- 282 (432)
+..-..+-.......-++.+++ .+| .|| .+..||..+..-............... .-+|++.++|+.++..
T Consensus 364 ~a~M~~~R~~~~v~~l~g~iYa-vGG-~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 364 VAPMNTKRSDFGVAVLDGKLYA-VGG-FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred cCCccCccccceeEEECCEEEE-Eec-cccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 2111222223444444444443 334 554 466677776543333222222222211 2278888888866541
Q ss_pred ----EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007 283 ----VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS 336 (432)
Q Consensus 283 ----i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 336 (432)
+..||..+.+....-.......... ++. -++.+.+.|+.|+ +|..||..+.+
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCc
Confidence 6778877765432221111111112 222 3677888888776 36667777665
No 400
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.38 Score=39.17 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=65.4
Q ss_pred CCCEEEEEc--CC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007 96 DHGCFAAGT--DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (432)
Q Consensus 96 ~~~~l~~~~--~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~ 172 (432)
+|.++.+.+ .. .|++|++.+++......+. ....---.+.-..+..+..+... |.-..+|..+-+++..+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~e------gvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKE------GVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEecc------ceeEEEChHHhhhhccc
Confidence 445555544 22 2999999998888766664 11211122333455666666554 88899999999999988
Q ss_pred ecCCceEEEEEecCccEEEeCC--eEEEEEcCCCeeeE
Q 014007 173 SFRSEVRSVKLRRDRIIVVLEQ--KIFVYNFADLKLLH 208 (432)
Q Consensus 173 ~~~~~v~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~ 208 (432)
...+.=+.++..... ++.+|| +++.-|.++.....
T Consensus 128 ~y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~ 164 (262)
T COG3823 128 SYEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELD 164 (262)
T ss_pred ccCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcc
Confidence 877777777654333 444566 45555665544333
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.07 E-value=1.6 Score=42.76 Aligned_cols=234 Identities=14% Similarity=0.120 Sum_probs=117.1
Q ss_pred cCCCCEEEEEc-CC------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCC-CCCCCCeEEEEeCCC
Q 014007 94 NQDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPD-PQYPLNKVMIWDDHQ 165 (432)
Q Consensus 94 s~~~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d-~~~~~~~v~iwd~~~ 165 (432)
+..+.++++|+ .+ .+..||..+........+. ......+++...+..++ .|+.+ .......+..||..+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~--~~r~~~~~~~~~~~lYv-~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP--SPRCRVGVAVLNGKLYV-VGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC--cccccccEEEECCEEEE-EccccCCCcccceEEEecCCC
Confidence 33455666766 32 2778887766555444443 33444555555554444 44444 344447899999887
Q ss_pred CceeEEee--cCCceEEEEEecCccEEE--eCC-----eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007 166 SRCIGELS--FRSEVRSVKLRRDRIIVV--LEQ-----KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 166 ~~~~~~~~--~~~~v~~~~~~~~~~~~~--~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
++-...-. ....-.+++....-.+++ .|| .+..||..+.+--..- .............-+..++++ +|.
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~-GG~ 436 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYII-GGG 436 (571)
T ss_pred CceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEE-cCc
Confidence 76322111 111112222222333333 132 5888887764321111 111123334444444555544 331
Q ss_pred C-----CCcEEEEEccCCceeeeec---cCCceeEEEEcCCCCEEEEEcCCCc----eEEEEECCCCceEEEEEeCCCcC
Q 014007 237 Q-----KGQVRVEHYASKRTKFIMA---HDSRIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 237 ~-----d~~i~i~d~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~----~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
. -..+..||..++.-..... -........ -++.+.+.|+.|+. .|..||..+.+-...-.......
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 1 1456778877754333221 111111222 27778888887762 16778887765543321111112
Q ss_pred ceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007 305 EIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS 336 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 336 (432)
.+....+ +++..++|+.|| +|..||..+.+
T Consensus 515 ~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 515 AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 2222222 667778888776 46777766655
No 402
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.99 E-value=0.014 Score=57.24 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=90.0
Q ss_pred cCCceEEEEEecCc--cEEEeCCeEEEEEcC--CCeeeEEE-----eeccCCcceEEEecCCCcEEEEeecCCCCcEEEE
Q 014007 174 FRSEVRSVKLRRDR--IIVVLEQKIFVYNFA--DLKLLHQI-----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVE 244 (432)
Q Consensus 174 ~~~~v~~~~~~~~~--~~~~~d~~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 244 (432)
+.+.+..+.|.... +....-|.+.+||+. .|+....+ .........+.|.|---.-..+|.+..++.+++.
T Consensus 131 f~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL 210 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLL 210 (1283)
T ss_pred CCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEe
Confidence 45666666664311 111223556666654 24332222 2222333455555532222345567788999998
Q ss_pred EccCCceeeeeccCCceeEEE-----------EcCCCCEEEEEcCCCceEEEEEC-----CCCceEEEEEeCCCcCceEE
Q 014007 245 HYASKRTKFIMAHDSRIACFA-----------LTQDGQLLATSSTKGTLVRIFNT-----LDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 245 d~~~~~~~~~~~~~~~i~~~~-----------~sp~~~~l~~~~~dg~~i~vwd~-----~~~~~~~~~~~~~~~~~i~~ 308 (432)
.++......+..|..++..++ .+|||..++.++.||. +++|.+ ...+|++..+.|.....+..
T Consensus 211 ~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkphd~~p~vC~ 289 (1283)
T KOG1916|consen 211 NINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPHDKHPRVCW 289 (1283)
T ss_pred eechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCCCCCCceee
Confidence 887755555666776655543 5899999999999998 777754 34456666664321122333
Q ss_pred EEECCCC---------CEEEEEe-CCCeEEEEEecCCCCC
Q 014007 309 LAFSSNA---------QWLAVSS-DKGTVHVFNLKVNSGS 338 (432)
Q Consensus 309 ~~~s~~~---------~~l~~~~-~dg~i~iwd~~~~~~~ 338 (432)
+ ++.+. .++++++ .+..+++|.....+++
T Consensus 290 l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 290 L-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred e-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3 33221 1344444 3456888877766643
No 403
>PHA02713 hypothetical protein; Provisional
Probab=95.94 E-value=1.4 Score=43.24 Aligned_cols=119 Identities=8% Similarity=0.105 Sum_probs=52.9
Q ss_pred CeEEEEeCCCCceeE--EeecCCceEEEEEecCccEEEe--C------CeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007 156 NKVMIWDDHQSRCIG--ELSFRSEVRSVKLRRDRIIVVL--E------QKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~--d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (432)
..+..||..+++-.. .+.....-.+++...+..+++. + ..+..||..+.+-. .+.....+....+...-
T Consensus 272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~ 350 (557)
T PHA02713 272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI 350 (557)
T ss_pred CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE
Confidence 357788877764222 2221111123333333333331 1 24778887765432 12111112222233333
Q ss_pred CCcEEEEeecCCC-----CcEEEEEccCCceeeeeccCC---ceeEEEEcCCCCEEEEEcCC
Q 014007 226 VGSLVLVCPGLQK-----GQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 226 ~~~~~~~~~g~~d-----~~i~i~d~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d 279 (432)
++.++++ +| .+ ..+..||..+..-..+..... ....+.+ +|++.+.|+.+
T Consensus 351 ~g~IYvi-GG-~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~ 408 (557)
T PHA02713 351 DDTIYAI-GG-QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRT 408 (557)
T ss_pred CCEEEEE-CC-cCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCC
Confidence 3455544 34 33 347888887754333222111 1112222 67777888765
No 404
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.84 E-value=1.4 Score=40.04 Aligned_cols=236 Identities=13% Similarity=0.082 Sum_probs=116.9
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee-EEEeec---ccCcceeEEEEeeeCC-----eEEEecCCCCCCCC--C
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE-IFRRDF---ERGGGIGVVEMLFRCN-----ILALVGGGPDPQYP--L 155 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~-~~~~~~---~~~~~~~v~~~~~~~~-----~~~~~s~~~d~~~~--~ 155 (432)
.-+.|+|.|||++|++-..+.|++++. .+.. .....+ ..........++++|+ ..+++....+.... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 457899999999888766555999883 3332 211221 2245678899999983 33444332100000 0
Q ss_pred CeEEEEeCCCC-------cee-EEeec----CCceEEEEEecCccEEEe----------------CCeEEEEEcCCCee-
Q 014007 156 NKVMIWDDHQS-------RCI-GELSF----RSEVRSVKLRRDRIIVVL----------------EQKIFVYNFADLKL- 206 (432)
Q Consensus 156 ~~v~iwd~~~~-------~~~-~~~~~----~~~v~~~~~~~~~~~~~~----------------d~~i~i~d~~~~~~- 206 (432)
..|.-|....+ +.+ ..+.. ...-..|.|.|||.+.++ .|.|.-.+.. ++.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~p 160 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSIP 160 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB-
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcCC
Confidence 23444444333 111 11111 344567999999976663 1334444432 221
Q ss_pred ------------eEEE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC------------------------
Q 014007 207 ------------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK------------------------ 249 (432)
Q Consensus 207 ------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~------------------------ 249 (432)
...+ .++.++ ..++|+|....++.+-.| .++.=.|..+..+
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~-~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNP-FGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEE-EEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCccccCCCceEEEEEeCCCcc-ccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0111 122222 257888884455554433 3332222222210
Q ss_pred ------ceeeeeccCCceeEEEEcC-------CCCEEEEEcCCCceEEEEECCCCceEEEEEe--CCCcCceEEEEECCC
Q 014007 250 ------RTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--GADRAEIYSLAFSSN 314 (432)
Q Consensus 250 ------~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~--~~~~~~i~~~~~s~~ 314 (432)
....+ .+...+..+.|.. .|.++++.-..+. |....+.....+..... ......+..+++.||
T Consensus 239 ~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 239 CPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGR-IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp -TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCE-EEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 00112 2334566676653 4556666665566 77777765533322221 112347999999999
Q ss_pred CCEEEEEeCCCeEE
Q 014007 315 AQWLAVSSDKGTVH 328 (432)
Q Consensus 315 ~~~l~~~~~dg~i~ 328 (432)
|.++++...+|.|+
T Consensus 317 G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 317 GALYVSDDSDGKIY 330 (331)
T ss_dssp SEEEEEE-TTTTEE
T ss_pred CeEEEEECCCCeEe
Confidence 99888887888764
No 405
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.74 E-value=2.7 Score=42.66 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.6
Q ss_pred EEEEEecCCeEEEEEecCCCCCcceEeeec
Q 014007 394 TVVILGMDGSFYRCQFDPVNGGEMTQLEYN 423 (432)
Q Consensus 394 ~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~ 423 (432)
.|+.++.+|.+++ +|.++|+.+...+..
T Consensus 461 ~v~~~~K~G~~~v--lDr~tG~~l~~~~e~ 488 (764)
T TIGR03074 461 ALVAPTKQGQIYV--LDRRTGEPIVPVEEV 488 (764)
T ss_pred EEEEECCCCEEEE--EECCCCCEEeeceee
Confidence 7889999998877 777888888776654
No 406
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.71 E-value=1.6 Score=39.71 Aligned_cols=228 Identities=14% Similarity=0.168 Sum_probs=114.4
Q ss_pred EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce---eEEee-----cCCceEEEEEecC----cc-EEEeC-----
Q 014007 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC---IGELS-----FRSEVRSVKLRRD----RI-IVVLE----- 193 (432)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~---~~~~~-----~~~~v~~~~~~~~----~~-~~~~d----- 193 (432)
-+.|+|.|++.++++-- . |.|++++ ..+.. +..+. .......++++|+ +. +++..
T Consensus 4 P~~~a~~pdG~l~v~e~-~-----G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAER-S-----GRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp EEEEEEETTSCEEEEET-T-----TEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred ceEEEEeCCCcEEEEeC-C-----ceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 46889999998888755 5 9999999 44443 22221 3456789999994 33 33321
Q ss_pred -----CeEEEEEcCCC-------eee-EEEee---ccCCcceEEEecCCCcEEEEeecCC-----------CCcEEEEEc
Q 014007 194 -----QKIFVYNFADL-------KLL-HQIET---IANPKGLCAVSQGVGSLVLVCPGLQ-----------KGQVRVEHY 246 (432)
Q Consensus 194 -----~~i~i~d~~~~-------~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~-----------d~~i~i~d~ 246 (432)
..|.-|....+ +.+ ..+.. ..+....+.|.|+| .+++..+... .|.|.-.+.
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~ 155 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDP 155 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEET
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecc
Confidence 24555554433 111 11121 22334568999998 6666543221 234444443
Q ss_pred cCCc-------------eeee-eccCCceeEEEEcCC-CCEEEEE-cCCCc-eEEEEECCCC------------------
Q 014007 247 ASKR-------------TKFI-MAHDSRIACFALTQD-GQLLATS-STKGT-LVRIFNTLDG------------------ 291 (432)
Q Consensus 247 ~~~~-------------~~~~-~~~~~~i~~~~~sp~-~~~l~~~-~~dg~-~i~vwd~~~~------------------ 291 (432)
+... ...+ .++. ....++|+|. |.++++= +.++. .|.+- ..|
T Consensus 156 dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i--~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 156 DGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRI--EPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp TSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE---TT-B--TTTBSSSCSTTSS-
T ss_pred cCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEe--ccCCcCCCCCCcCCCCCCCCc
Confidence 3320 0111 1222 3457899998 6655442 11221 13222 111
Q ss_pred -----------ceEEEEEeCCCcCceEEEEECC-------CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 292 -----------TLLQEVRRGADRAEIYSLAFSS-------NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 292 -----------~~~~~~~~~~~~~~i~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
.++..+. +...+..+.|.. .|.+|++.-..+.|....++....+.
T Consensus 233 ~~~~~~~~~~~~P~~~~~---~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~-------------- 295 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYP---PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVT-------------- 295 (331)
T ss_dssp ECTGSS-TTS---SEEET---TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEE--------------
T ss_pred cccccCCCCcCccceeec---CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCcc--------------
Confidence 0122222 224566677653 34456555556677777776443110
Q ss_pred CCceeEeecccceeecceeeEEE-EecCCCceEEEEccCCCEEEEEecCCeEE
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQF-RLVEGSPYIVAFGHQKNTVVILGMDGSFY 405 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 405 (432)
....+ ......+..+++.|||.+.++-+.+|.|+
T Consensus 296 ------------------~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 296 ------------------EEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ------------------EEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ------------------ceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 00111 12223688999999999999888899876
No 407
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.4 Score=39.03 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=89.9
Q ss_pred ceeEEeecCCce--EEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 167 RCIGELSFRSEV--RSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 167 ~~~~~~~~~~~v--~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
+.++++.|...- ..+.+. ++.++.+ ...|++||+.+++.+..-......+..--+..-++.++..+ -.+|
T Consensus 35 evi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT--w~eg 111 (262)
T COG3823 35 EVIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT--WKEG 111 (262)
T ss_pred EEEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEE--eccc
Confidence 345555554332 233333 3444443 45899999999988766543322222222334455556554 4688
Q ss_pred cEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCCC
Q 014007 240 QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQ 316 (432)
Q Consensus 240 ~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~ 316 (432)
.-..+|.++-+...-...++.=..++ .|++.|+.++...+ ++.-|-++.....++...... ..++.+.|- ||.
T Consensus 112 vaf~~d~~t~~~lg~~~y~GeGWgLt--~d~~~LimsdGsat-L~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~ 187 (262)
T COG3823 112 VAFKYDADTLEELGRFSYEGEGWGLT--SDDKNLIMSDGSAT-LQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE 187 (262)
T ss_pred eeEEEChHHhhhhcccccCCcceeee--cCCcceEeeCCceE-EEecCHHHhhhcceEEEEECCeecccccceeee-ccE
Confidence 88888887733222122333334443 35666777766667 888887765544443321111 234455553 666
Q ss_pred EEEEEeCCCeEEEEEecCCCC
Q 014007 317 WLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~ 337 (432)
..|-.-.+..|...|.++++.
T Consensus 188 lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 188 LYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred EEEeeeeecceEEEcCCCCcE
Confidence 666555566676777777763
No 408
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=0.047 Score=44.91 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=64.1
Q ss_pred cCCCCcEEEEEccC-Cce-eeeeccCCceeEE-EEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-CceEEEE
Q 014007 235 GLQKGQVRVEHYAS-KRT-KFIMAHDSRIACF-ALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-AEIYSLA 310 (432)
Q Consensus 235 g~~d~~i~i~d~~~-~~~-~~~~~~~~~i~~~-~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~~i~~~~ 310 (432)
|..+|.|.+|.... +.. .....-...|.++ .--.++.+..+++.||. ||.|++.-++.+..... |. .++..+.
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~g~--h~~~~~e~~i 152 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYVGQ--HNFESGEELI 152 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeeecc--ccCCCcceeE
Confidence 56899999998773 111 1111122233332 22235668889999999 99999988887765553 33 4555555
Q ss_pred ECCCCCEEEEE--eCCCeEEEEEecCCC
Q 014007 311 FSSNAQWLAVS--SDKGTVHVFNLKVNS 336 (432)
Q Consensus 311 ~s~~~~~l~~~--~~dg~i~iwd~~~~~ 336 (432)
.+..+++++.+ +.|..++.|++....
T Consensus 153 vv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 153 VVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred EecCCceEEeeccccchhhhhcchhhhh
Confidence 56666777777 777788888877654
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.42 E-value=0.33 Score=47.27 Aligned_cols=108 Identities=11% Similarity=0.137 Sum_probs=75.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEee--eCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--RCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...-+.-|.-++.-++..++. +.|||.......+...+. ....|.++.| .+++..+++-+-. +.|.+|.-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--~~~~I~dLDWtst~d~qsiLaVGf~-----~~v~l~~Q 103 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--EDDPIRDLDWTSTPDGQSILAVGFP-----HHVLLYTQ 103 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--CCCceeeceeeecCCCCEEEEEEcC-----cEEEEEEc
Confidence 334445555555555544554 999999988888777774 5666776665 5788888777776 88888853
Q ss_pred C---------CCceeEEee---c-CCceEEEEEecCccEEE-eCCeEEEEEc
Q 014007 164 H---------QSRCIGELS---F-RSEVRSVKLRRDRIIVV-LEQKIFVYNF 201 (432)
Q Consensus 164 ~---------~~~~~~~~~---~-~~~v~~~~~~~~~~~~~-~d~~i~i~d~ 201 (432)
. +-..++.+. + ..+|.+..|.++|.+++ +++.+.|+|-
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFDK 155 (631)
T ss_pred cchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEECC
Confidence 1 112344443 3 47899999999999987 6889999983
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.40 E-value=1.7 Score=40.08 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=80.5
Q ss_pred eeEEEEeeeCCeEEEecCCCCC------CCCCC-eEEEEeCCC--Cce--eEEee-cCCceEEEEEecCccEEEeCCeEE
Q 014007 130 IGVVEMLFRCNILALVGGGPDP------QYPLN-KVMIWDDHQ--SRC--IGELS-FRSEVRSVKLRRDRIIVVLEQKIF 197 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~------~~~~~-~v~iwd~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~ 197 (432)
.....|+|.+++.++++...+- .-..+ .|.+++-.+ |+. ...+. .......+++.+++.+++....|.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~ 93 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL 93 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence 3456778888887777642110 00013 777776443 332 23333 344568899999995554455565
Q ss_pred EE-EcCC-C----ee--e-EEEeec----cCCcceEEEecCCCcEEEEeecC-----------------CCCcEEEEEcc
Q 014007 198 VY-NFAD-L----KL--L-HQIETI----ANPKGLCAVSQGVGSLVLVCPGL-----------------QKGQVRVEHYA 247 (432)
Q Consensus 198 i~-d~~~-~----~~--~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~-----------------~d~~i~i~d~~ 247 (432)
.+ |... + +. + ..+... ......+++.|+|. +++..+.. ..|.|.-++.+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 55 4321 1 21 1 112111 22355788999874 55543210 01445556666
Q ss_pred CCceeeeeccCCceeEEEEcCCCCEEEEEcCCC
Q 014007 248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKG 280 (432)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 280 (432)
+.....+...-.....++|+|+|+++++-..++
T Consensus 173 g~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 173 GGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred CCeEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 555544433334457899999998877654333
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.28 E-value=1.2 Score=41.03 Aligned_cols=137 Identities=17% Similarity=0.144 Sum_probs=76.2
Q ss_pred CceEEEEEecCccEEEeC---------------CeEEEEEcCC--Cee--eEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007 176 SEVRSVKLRRDRIIVVLE---------------QKIFVYNFAD--LKL--LHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~~d---------------~~i~i~d~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
.....|+|.++|++.+++ +.|.+++-.+ ++. ...+.........+++.+++ ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 456678888888877752 2677776443 332 23332223334567787776 55542
Q ss_pred CCCcEEEE-EccCC-----ceee----eec----cCCceeEEEEcCCCCEEEEEcCC-------------------CceE
Q 014007 237 QKGQVRVE-HYASK-----RTKF----IMA----HDSRIACFALTQDGQLLATSSTK-------------------GTLV 283 (432)
Q Consensus 237 ~d~~i~i~-d~~~~-----~~~~----~~~----~~~~i~~~~~sp~~~~l~~~~~d-------------------g~~i 283 (432)
. ..|..+ |.+.. .... +.. +......++|.|||.+.++-+.. +. |
T Consensus 89 ~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i 166 (367)
T TIGR02604 89 P-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-L 166 (367)
T ss_pred C-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce-E
Confidence 2 344433 54331 2111 111 23447789999999876654421 34 5
Q ss_pred EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.-+|...++ +..+..+ + .....++|+++|+++++-.
T Consensus 167 ~r~~pdg~~-~e~~a~G-~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 167 FRYNPDGGK-LRVVAHG-F-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred EEEecCCCe-EEEEecC-c-CCCccceECCCCCEEEEcc
Confidence 555554443 3333322 2 3467899999999876644
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.16 E-value=1.5 Score=42.82 Aligned_cols=121 Identities=12% Similarity=0.048 Sum_probs=72.6
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC--CCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS--SNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s--~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.+.-+.-+.-++ ++....++..+.|||.+.+.+..+-.- ...+.|.++.|. |+|+.+++.+..+.|.+|--....-
T Consensus 31 ~~~li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 344444455444 444455554499999998876554442 135789999985 6899999999999999996543221
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC-CCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE-GSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
.. ..++... .+.+ .+..+. .+|.+..|.++|..++.+| ..++|++
T Consensus 109 ~~------------~~p~w~~-----------i~~i-~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 109 TN------------KGPSWAP-----------IRKI-DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred hc------------CCcccce-----------eEEE-EeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 10 0001110 1111 122222 4689999999988776544 4567654
No 413
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.16 E-value=1.5 Score=36.17 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=79.9
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCC--CceeEEeecCCceEEEEEecCccEEEe------CC---eEEEE-EcCC----
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQ--SRCIGELSFRSEVRSVKLRRDRIIVVL------EQ---KIFVY-NFAD---- 203 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~------d~---~i~i~-d~~~---- 203 (432)
+.+++++++ +.|.+|++.+ .+.+.++..-+.|..+.++..|.++++ .. .+|+| +.+.
T Consensus 29 d~Lfva~~g-------~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 29 DALFVAASG-------CKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred ceEEEEcCC-------CEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 566666555 7899999883 356677777799999999999999994 23 56665 2221
Q ss_pred CeeeE---------------------EEee-ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-----eee--
Q 014007 204 LKLLH---------------------QIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFI-- 254 (432)
Q Consensus 204 ~~~~~---------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~-- 254 (432)
.+++. .++. ...+..+++..|-...+++++ ++.+.+|.+..... ..+
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEEEEecccccEEec
Confidence 11111 1111 122345677777766766654 57899998765333 111
Q ss_pred -----eccCC-ceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007 255 -----MAHDS-RIACFALTQDGQLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 255 -----~~~~~-~i~~~~~sp~~~~l~~~~~dg~~i~vwd~ 288 (432)
..|.+ .+..+++ -+.|+|..+... ++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s~~e--v~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAI--CEGYIAVMSDLE--VLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEE--EeeEEEEecCCE--EEEEEE
Confidence 11111 2445555 356777776653 676654
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.14 E-value=4.3 Score=41.26 Aligned_cols=177 Identities=7% Similarity=-0.004 Sum_probs=90.6
Q ss_pred CeEEEEeCCCCceeEEeecCCceE-------------EEEEec---CccEEEe------------CCeEEEEEcCCCeee
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVR-------------SVKLRR---DRIIVVL------------EQKIFVYNFADLKLL 207 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~~~~~------------d~~i~i~d~~~~~~~ 207 (432)
+.+.-.|.++|+.+..+...+.|. .+.-.| ++.+++. +|.|+-+|.++|+.+
T Consensus 270 g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 899999999999887765433321 011111 3444441 478999999999998
Q ss_pred EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 208 HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
-.+........ ..-+.++ .+. .++...=...-+|.+.+.+..-.+...+ .+....+.....-..+. |.-.|
T Consensus 350 W~~~~g~p~~~--~~~~~g~-~~~-~gg~n~W~~~s~D~~~glvy~ptGn~~p----d~~g~~r~~~~n~y~~s-lvALD 420 (764)
T TIGR03074 350 WAWDPGNPDPT--APPAPGE-TYT-RNTPNSWSVASYDEKLGLVYLPMGNQTP----DQWGGDRTPADEKYSSS-LVALD 420 (764)
T ss_pred eEEecCCCCcc--cCCCCCC-Eec-cCCCCccCceEEcCCCCeEEEeCCCccc----cccCCccccCcccccce-EEEEe
Confidence 87753211111 0011222 111 1111111223344444333222222111 01000000001112344 77788
Q ss_pred CCCCceEEEEEeCCCcC-------ceEEEEECC-CCC---EEEEEeCCCeEEEEEecCCCCCCCC
Q 014007 288 TLDGTLLQEVRRGADRA-------EIYSLAFSS-NAQ---WLAVSSDKGTVHVFNLKVNSGSARS 341 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~-------~i~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~ 341 (432)
.++|+..-.++...|.. ...=+.+.. +|+ .++.++.+|.++++|.++++.+...
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 88888887776532321 111122322 553 7889999999999999999866553
No 415
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.13 E-value=0.81 Score=45.16 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCCCcEEEEEccC-----Cce---------------eeeeccCCceeEEEEc--CCCCEEEEEcCCCceEEEEECCCC-c
Q 014007 236 LQKGQVRVEHYAS-----KRT---------------KFIMAHDSRIACFALT--QDGQLLATSSTKGTLVRIFNTLDG-T 292 (432)
Q Consensus 236 ~~d~~i~i~d~~~-----~~~---------------~~~~~~~~~i~~~~~s--p~~~~l~~~~~dg~~i~vwd~~~~-~ 292 (432)
..||.|.+|.+.. ... ..........++++++ ...++||++++... |.||-.... .
T Consensus 121 ~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFaf~l~~~ 199 (717)
T PF08728_consen 121 TDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFAFALVDE 199 (717)
T ss_pred ecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCce-EEEEEEecccc
Confidence 4899999997643 000 1112234578899998 78888998888888 888865432 1
Q ss_pred eEEEEEeCCCcCceEEEEECCCC-----C-EEEEEeCCCeEEEEEe
Q 014007 293 LLQEVRRGADRAEIYSLAFSSNA-----Q-WLAVSSDKGTVHVFNL 332 (432)
Q Consensus 293 ~~~~~~~~~~~~~i~~~~~s~~~-----~-~l~~~~~dg~i~iwd~ 332 (432)
....-..+.+...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11111111244678899997643 2 7888889999999888
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.28 Score=49.91 Aligned_cols=143 Identities=11% Similarity=0.083 Sum_probs=87.5
Q ss_pred CCceEEEEEecCccEEE---e--CCeEEEEEcCCCeeeE-----EEee------ccCCcceEEEecCCCcEEEEeecCCC
Q 014007 175 RSEVRSVKLRRDRIIVV---L--EQKIFVYNFADLKLLH-----QIET------IANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 175 ~~~v~~~~~~~~~~~~~---~--d~~i~i~d~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
.-++..+...+|+...+ + +..|..||+++...-. -+.. ......++.|.|.-....+++ ..|
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~--l~d 177 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD--LSD 177 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh--ccc
Confidence 44566677777766554 2 3378999987632211 1111 111223456666544333333 467
Q ss_pred CcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC--CcCceEEEEECCCC
Q 014007 239 GQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNA 315 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~ 315 (432)
+.|++..+....... -..-....++++|+|.|+.+++|-..|+ +.-|. .+++....+.... ....|.+|+|-...
T Consensus 178 lsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt-~vQy~-P~leik~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 178 LSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGT-EVQYE-PSLEIKSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCe-EEEee-cccceeecccCCCcCCCcceeEEEEecce
Confidence 888887665422211 1244567899999999999999999999 77775 4565555554432 12579999998776
Q ss_pred CEEEEE
Q 014007 316 QWLAVS 321 (432)
Q Consensus 316 ~~l~~~ 321 (432)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 666643
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.09 E-value=0.52 Score=44.63 Aligned_cols=145 Identities=11% Similarity=0.091 Sum_probs=85.3
Q ss_pred CCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC---cEEEEeecCCCCcEEEEEc
Q 014007 175 RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG---SLVLVCPGLQKGQVRVEHY 246 (432)
Q Consensus 175 ~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~ 246 (432)
-.++.+++|.....++.+ +|.+++=|- +.+..| ..|..+.|.|-+. -.++|. .....|.+|.+
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAV--QHkkhVtVWqL 89 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAV--QHKKHVTVWQL 89 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEE--eccceEEEEEe
Confidence 467888888654444442 555554442 233333 3456778877532 123444 36789999998
Q ss_pred cCC---ceeeee----cc--CC--ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECC
Q 014007 247 ASK---RTKFIM----AH--DS--RIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 247 ~~~---~~~~~~----~~--~~--~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~ 313 (432)
... .-+.+. .. .- -...+.|+|....|++-..... -.+++++... ....++ ..+-|.+.+|.+
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~---~~G~IhCACWT~ 165 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-SVLPSVHCDSSRVKADIK---TSGLIHCACWTK 165 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-eEeeeeeeCCceEEEecc---CCceEEEEEecC
Confidence 631 111111 11 11 1245779999999888776654 4556665433 333343 447899999999
Q ss_pred CCCEEEEEe-CCCeEEEEEe
Q 014007 314 NAQWLAVSS-DKGTVHVFNL 332 (432)
Q Consensus 314 ~~~~l~~~~-~dg~i~iwd~ 332 (432)
||+.|+++- ..=.-+|||-
T Consensus 166 DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCEEEEEeCCeEEEEEecC
Confidence 999887663 3334578873
No 418
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.04 E-value=2.2 Score=37.28 Aligned_cols=217 Identities=13% Similarity=0.138 Sum_probs=120.7
Q ss_pred CeEEEEEcCCCCEEEEEcCCc-EEEEEcCC-----CeeEEEeeccc--C--cceeEEEEeeeCCeEE------------E
Q 014007 87 TLLHISFNQDHGCFAAGTDHG-FRIYNCDP-----FREIFRRDFER--G--GGIGVVEMLFRCNILA------------L 144 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~-----~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~------------~ 144 (432)
.-+.|+|+|.+.+-++....+ ..+||.+. -...+...+.. + .....+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 457899999887666555433 89999861 12122233321 1 1234556666543332 3
Q ss_pred ecCCCCCCCCCCeEEEEeCCCCce-----eEEee--cCCc-eEEEEEecC--ccEEE----eCCeEEEEEcCCCeeeEE-
Q 014007 145 VGGGPDPQYPLNKVMIWDDHQSRC-----IGELS--FRSE-VRSVKLRRD--RIIVV----LEQKIFVYNFADLKLLHQ- 209 (432)
Q Consensus 145 ~s~~~d~~~~~~~v~iwd~~~~~~-----~~~~~--~~~~-v~~~~~~~~--~~~~~----~d~~i~i~d~~~~~~~~~- 209 (432)
+.+.++ |+|.-|...-+.. ...+. ..+. -+.+++... +.+|. ..++|.+||-. ...+..
T Consensus 104 if~tEd-----GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~ 177 (336)
T TIGR03118 104 LFVTED-----GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLP 177 (336)
T ss_pred EEEeCC-----ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCC
Confidence 444455 8999998533322 12222 1233 345666533 44444 27899999843 222211
Q ss_pred --Eee-----ccCCcceEEEecCCCcEEEEee-----------cCCCCcEEEEEccCCceeeee--ccCCceeEEEEcC-
Q 014007 210 --IET-----IANPKGLCAVSQGVGSLVLVCP-----------GLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQ- 268 (432)
Q Consensus 210 --~~~-----~~~~~~~~~~~~~~~~~~~~~~-----------g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp- 268 (432)
+.. ...+... .--+..+++.++ |.--|.|-+||.....++++. +.-...+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnI---qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNV---QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcce---EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChh
Confidence 100 0011111 111223333321 223478999999988777663 2334456777766
Q ss_pred -----CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC----cCceEEEEECC
Q 014007 269 -----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSS 313 (432)
Q Consensus 269 -----~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----~~~i~~~~~s~ 313 (432)
.|.+|+---.||+ |..||..+++.+-.+..... ...++.|+|..
T Consensus 255 ~FG~~sg~lLVGNFGDG~-InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGT-INAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCCCeEEeecCCce-eEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 5777877777999 99999999998887775321 13567888865
No 419
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.04 E-value=2.1 Score=37.12 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=86.7
Q ss_pred CeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe-C
Q 014007 87 TLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD-D 163 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd-~ 163 (432)
.+.+.+++++++.+|... +++-.||-...+.... ..+ ....+....|++++...+....+ ...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~-~~~---~g~~l~~PS~d~~g~~W~v~~~~-----~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR-PVL---TGGSLTRPSWDPDGWVWTVDDGS-----GGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce-eec---cCCccccccccCCCCEEEEEcCC-----CceEEEEec
Confidence 688899999999877655 4443444333332221 111 22366777888887666555544 5555553 3
Q ss_pred CCCcee-EEee---cCCceEEEEEecCccEEE--e----CCeEEEEEcCC---C--e----eeEEEeeccCCcceEEEec
Q 014007 164 HQSRCI-GELS---FRSEVRSVKLRRDRIIVV--L----EQKIFVYNFAD---L--K----LLHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 164 ~~~~~~-~~~~---~~~~v~~~~~~~~~~~~~--~----d~~i~i~d~~~---~--~----~~~~~~~~~~~~~~~~~~~ 224 (432)
..++.. ..+. ....|..+.++|||..++ . ++.|.+--+.. + . .+.........+..+.|..
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 333322 2222 222899999999998887 3 56777765432 3 1 1111112234667788888
Q ss_pred CCCcEEEEeecCCCCcEEE-EEccCCceeee
Q 014007 225 GVGSLVLVCPGLQKGQVRV-EHYASKRTKFI 254 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i-~d~~~~~~~~~ 254 (432)
++..+++. ...++.+.. ..........+
T Consensus 176 ~~~L~V~~--~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 176 DSTLVVLG--RSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred CCEEEEEe--CCCCCceeEEEEccCCccccc
Confidence 87643332 334454444 44554444333
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.92 E-value=2.5 Score=41.88 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=74.9
Q ss_pred eeEEEEcC--CCCEEEEEcCCCceEEEEECCC-------C-------------ceEEEEEeCCCcCceEEEEEC--CCCC
Q 014007 261 IACFALTQ--DGQLLATSSTKGTLVRIFNTLD-------G-------------TLLQEVRRGADRAEIYSLAFS--SNAQ 316 (432)
Q Consensus 261 i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~-------~-------------~~~~~~~~~~~~~~i~~~~~s--~~~~ 316 (432)
|+-|.... +...|+.+..||. |.+|.+++ . ++...+. .....++++++ ...+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSR 178 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcce
Confidence 44444333 4568899999999 99996631 0 1222333 33578999998 7888
Q ss_pred EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC---C
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK---N 393 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~ 393 (432)
+||+++....|.||-.......... . .-..+...|.+|+|-++. .
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~--------------------------~------~s~~~~hNIP~VSFl~~~~d~~ 226 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYH--------------------------V------PSHQHSHNIPNVSFLDDDLDPN 226 (717)
T ss_pred EEEEecCCceEEEEEEecccccccc--------------------------c------cccccccCCCeeEeecCCCCCc
Confidence 9999988888888876653211000 0 000134568889997743 2
Q ss_pred ---EEEEEecCCeEEEEEec
Q 014007 394 ---TVVILGMDGSFYRCQFD 410 (432)
Q Consensus 394 ---~l~~~~~dg~v~iw~~~ 410 (432)
+|++++-.|.+.+|++.
T Consensus 227 G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 227 GHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cceEEEEEeccCcEEEEEEE
Confidence 78889999999999884
No 421
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=2.8 Score=38.61 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=100.8
Q ss_pred EEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 89 LHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 89 ~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
+.+-|...++.|.+...+++.=|-+.+........+.....+.|.++.|++|...++.--.+ .+|.+++....+.
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~-----~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS-----KTVDFCNFIPDNS 100 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC-----ceEEEEecCCCch
Confidence 44566666677776667776667665433322233332356699999999999999998888 9999999754443
Q ss_pred eEEee-----cCCceEEEEEecCccEEE-eCCeEEEEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 169 IGELS-----FRSEVRSVKLRRDRIIVV-LEQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 169 ~~~~~-----~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
...+. ....|.+..|+.+..+.. .+.-+-+|.+.. .+.++..+.+.-.+....|.++.+-.++++ +-..+.+
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t-~~~~n~l 179 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST-TVLENVL 179 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCeeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec-ccccccc
Confidence 33322 345588999988755444 577777776544 234555566777788889999877655543 4344444
Q ss_pred EEEEccCC
Q 014007 242 RVEHYASK 249 (432)
Q Consensus 242 ~i~d~~~~ 249 (432)
.=+.++.+
T Consensus 180 npf~~~~~ 187 (657)
T KOG2377|consen 180 NPFHFRAG 187 (657)
T ss_pred ccEEEeec
Confidence 44555543
No 422
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.78 E-value=4 Score=39.04 Aligned_cols=113 Identities=7% Similarity=0.050 Sum_probs=68.3
Q ss_pred CCCCeEEEEEcCCC-----CEEEEEcCCcEEEEEcC-----CCeeEEEeecccCccee--EEEEeeeCCeEEEecCCCCC
Q 014007 84 PPPTLLHISFNQDH-----GCFAAGTDHGFRIYNCD-----PFREIFRRDFERGGGIG--VVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 84 ~~~~v~~~~~s~~~-----~~l~~~~~~~i~iw~~~-----~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~s~~~d~ 151 (432)
.-+.|..+.|.|-+ .+||+-..+.|.||.+- ..+....++.+-+.... -..+.|+|....++.-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~- 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR- 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC-
Confidence 34579999999864 47888888889999874 22222222222111112 2356788876554433322
Q ss_pred CCCCCeEEEEeCCCC--ceeEEeecCCceEEEEEecCccEEEe--CC--eEEEEEc
Q 014007 152 QYPLNKVMIWDDHQS--RCIGELSFRSEVRSVKLRRDRIIVVL--EQ--KIFVYNF 201 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~--d~--~i~i~d~ 201 (432)
..-.++++... .....++..+-|.|.+|.+||..++. +. .-++||-
T Consensus 134 ----dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 134 ----DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred ----ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 23344554433 34445568899999999999987762 43 4567773
No 423
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.67 E-value=0.54 Score=47.07 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=53.5
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCC----------Cce--E-EEEE------eCCCcCceEEEEECCC---CC
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTL--L-QEVR------RGADRAEIYSLAFSSN---AQ 316 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----------~~~--~-~~~~------~~~~~~~i~~~~~s~~---~~ 316 (432)
-.|..|.++|+|++|+..|..| |.|-.+.. |+. . +.+. .......|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4688999999999999999877 45544421 111 1 1111 1123357999999996 47
Q ss_pred EEEEEeCCCeEEEEEecCCC
Q 014007 317 WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~ 336 (432)
.|+.-..|+++++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997544
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.49 E-value=0.17 Score=29.52 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=25.9
Q ss_pred CceEEEEECCCC---CEEEEEeCCCeEEEEEecC
Q 014007 304 AEIYSLAFSSNA---QWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 304 ~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~ 334 (432)
+.+.++.|||+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888888889999999995
No 425
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=94.43 E-value=4.9 Score=38.58 Aligned_cols=275 Identities=13% Similarity=0.090 Sum_probs=122.0
Q ss_pred eCCeEEEecC---CCCCCCCCCeEEEEeCCCCceeEEeec-CCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEee
Q 014007 138 RCNILALVGG---GPDPQYPLNKVMIWDDHQSRCIGELSF-RSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET 212 (432)
Q Consensus 138 ~~~~~~~~s~---~~d~~~~~~~v~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~ 212 (432)
..+++.++.. ... ....++| ..|..+..+.. ......+...++|.+++ ..+.++.+|+ .|+.+.....
T Consensus 112 ~~~gl~~~~~~~~~~~-----~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~~~~~e~D~-~G~v~~~~~l 184 (477)
T PF05935_consen 112 MEDGLYFVNGNDWDSS-----SYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSGNRLYEIDL-LGKVIWEYDL 184 (477)
T ss_dssp -TT-EEEEEETT--BE-----EEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEBTEEEEE-T-T--EEEEEE-
T ss_pred cCCcEEEEeCCCCCCC-----ceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecCCceEEEcC-CCCEEEeeec
Confidence 3466777776 223 6788888 56777666652 11111266778998888 4788899997 4776666554
Q ss_pred ccCC---cceEEEecCCCcEEEEee-------cC----CC---------CcEEEEEccCC--ceee----------e---
Q 014007 213 IANP---KGLCAVSQGVGSLVLVCP-------GL----QK---------GQVRVEHYASK--RTKF----------I--- 254 (432)
Q Consensus 213 ~~~~---~~~~~~~~~~~~~~~~~~-------g~----~d---------~~i~i~d~~~~--~~~~----------~--- 254 (432)
.... ...+..-|+|+.++++.. .. .| ..+..||+..- .... .
T Consensus 185 ~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~ 264 (477)
T PF05935_consen 185 PGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGS 264 (477)
T ss_dssp -TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-S
T ss_pred CCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccC
Confidence 3322 345777788877766541 00 12 22233333320 0000 0
Q ss_pred eccC--CceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-cCc----eEE---------------EEE
Q 014007 255 MAHD--SRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-RAE----IYS---------------LAF 311 (432)
Q Consensus 255 ~~~~--~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-~~~----i~~---------------~~~ 311 (432)
.... --+.++.+.+ ++.+|+++-.-.. |...|.++++....+..+.. ... +.. ..|
T Consensus 265 ~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~-V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~ 343 (477)
T PF05935_consen 265 GGGRDWLHINSIDYDPSDDSIIVSSRHQSA-VIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDW 343 (477)
T ss_dssp STTSBS--EEEEEEETTTTEEEEEETTT-E-EEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS---
T ss_pred CCCCCccccCccEEeCCCCeEEEEcCcceE-EEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcc
Confidence 0001 1378999998 5555555555556 88999888888766653210 000 000 111
Q ss_pred CCCCCEEEEEeCCC---eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCceE
Q 014007 312 SSNAQWLAVSSDKG---TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYI 385 (432)
Q Consensus 312 s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~ 385 (432)
.-|++-+.--.+| .|.+||=...+......... ......+...+.-....+.....|.+..-++ -...+..
T Consensus 344 -~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~--~~~~~Sr~v~Y~Ide~~~T~~~vw~y~~~~g~~~yS~~~s~ 420 (477)
T PF05935_consen 344 -FWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVS--PKDNYSRAVEYRIDENKMTVEQVWEYGKPRGNEFYSPIVSS 420 (477)
T ss_dssp --SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCC--G-----EEEEEEEETTTTEEEEEEEESGGGGGGG--SS--E
T ss_pred -cccccceEEcCCCCeEEEEEEECCCCCCCCCccccc--cccccceEEEEEecCCCceEEEEEEeCCCCCCCccCCccee
Confidence 1245555555677 89999876655221110000 0000000111111111122223332221111 1245777
Q ss_pred EEEccC-CCEEEEEecCCeE--------EEEEecCCCCCcceEeeec
Q 014007 386 VAFGHQ-KNTVVILGMDGSF--------YRCQFDPVNGGEMTQLEYN 423 (432)
Q Consensus 386 ~~~s~~-~~~l~~~~~dg~v--------~iw~~~~~~~~~~~~~~~~ 423 (432)
+.+-++ |++|+..+..|.. ++-.++...++.+..++..
T Consensus 421 aq~l~n~gn~li~~g~~~~~~~~~~~~~~i~ev~~~~~~v~~e~~~~ 467 (477)
T PF05935_consen 421 AQYLPNKGNTLITSGMAGLFSNGKPSKGIIIEVDPETKEVVFELTIP 467 (477)
T ss_dssp EEEETTTTEEEEEEEEETTTSTTSEEEEEEEEEETTT--EEEEEEEE
T ss_pred eEEecCCCCEEEEeCcccccccCCCCCceEEEEEcCCCEEEEEEEEe
Confidence 888888 9999887776544 5666777766655555543
No 426
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.29 E-value=3.7 Score=36.51 Aligned_cols=227 Identities=13% Similarity=0.126 Sum_probs=102.2
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
..++|.|..+ ..+++| +.++.+...+.++.=....+...-......+....+....+.+.. |.|+.=. ..|
T Consensus 63 ~l~~I~f~~~-~g~ivG-~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~------G~iy~T~-DgG 133 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIVG-EPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR------GAIYRTT-DGG 133 (302)
T ss_dssp EEEEEEEETT-EEEEEE-ETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--------EEEES-STT
T ss_pred eEEEEEecCC-ceEEEc-CCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC------CcEEEeC-CCC
Confidence 4677888654 445555 445544444433321111111011122233333333333333332 5544332 333
Q ss_pred ceeEEee--cCCceEEEEEecCccEEEe--CCe-EEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 167 RCIGELS--FRSEVRSVKLRRDRIIVVL--EQK-IFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 167 ~~~~~~~--~~~~v~~~~~~~~~~~~~~--d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+.=..+. ..+.+..+..++||.+++. .|. ..-||--...-...-+.....+..+.|.+++.. .+++ ..|.|
T Consensus 134 ~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~l-w~~~---~Gg~~ 209 (302)
T PF14870_consen 134 KTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNL-WMLA---RGGQI 209 (302)
T ss_dssp SSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-E-EEEE---TTTEE
T ss_pred CCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCE-EEEe---CCcEE
Confidence 3322222 4677888889999999884 454 456664321112222234567888999999654 4444 45788
Q ss_pred EEEEccC--Cce----eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCC
Q 014007 242 RVEHYAS--KRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSN 314 (432)
Q Consensus 242 ~i~d~~~--~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~ 314 (432)
++=+... ..- ..+....-.+..++|.+++...++|+. |. + +.....|+.-+..+.. .-...++.+.|..+
T Consensus 210 ~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 210 QFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-L-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T--E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-E-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 7766221 111 111122334889999998877776654 44 3 4455566655544421 12356889999776
Q ss_pred CCEEEEEeCCCeEEEE
Q 014007 315 AQWLAVSSDKGTVHVF 330 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iw 330 (432)
.+-++.| .+|.|.-|
T Consensus 287 ~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TEEEEE--STTEEEEE
T ss_pred CceEEEC-CCcEEEEe
Confidence 6666655 67876544
No 427
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.24 E-value=0.29 Score=28.60 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=25.1
Q ss_pred CceeEEEEcCCC---CEEEEEcCCCceEEEEECCC
Q 014007 259 SRIACFALTQDG---QLLATSSTKGTLVRIFNTLD 290 (432)
Q Consensus 259 ~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~ 290 (432)
+.|.++.|+|+. .+|+.+-..+. |.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 468899999854 47877777787 99999985
No 428
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.15 E-value=2.9 Score=34.92 Aligned_cols=95 Identities=14% Similarity=0.197 Sum_probs=63.1
Q ss_pred ceeEEEEcCCCCEEE-EEcCCCceEEEEE--CCCCc-----eEEEEEeCC--CcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 260 RIACFALTQDGQLLA-TSSTKGTLVRIFN--TLDGT-----LLQEVRRGA--DRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~-~~~~dg~~i~vwd--~~~~~-----~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
--+.++|+.+.+.+. +-+.+-. |.-|| ..+|. .+..++... .....-.++...+|.+.++.-..++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~-V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYE-VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceE-EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 345788887776554 4455555 76677 55553 333333210 1122345666778888888888999999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
.|..+++. +..++.+...|++++|--
T Consensus 238 ~dp~tGK~-----------------------------------L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 238 VDPTTGKI-----------------------------------LLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ECCCCCcE-----------------------------------EEEEEcCCCceEEEEecC
Confidence 99999984 345777788899999965
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.07 E-value=0.35 Score=40.76 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=52.2
Q ss_pred EcCCCCEEEEEcCCCceEEEEECCCCceEEEE-------Ee-----CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 266 LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV-------RR-----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 266 ~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~-------~~-----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+..++++|++-+.+|. +++||+.+++++..- .. ......|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4457889999999999 999999998765432 10 01336789999999998887765 5788999887
Q ss_pred CCC
Q 014007 334 VNS 336 (432)
Q Consensus 334 ~~~ 336 (432)
-+.
T Consensus 96 L~~ 98 (219)
T PF07569_consen 96 LGC 98 (219)
T ss_pred cce
Confidence 655
No 430
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.01 E-value=3.9 Score=35.79 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=111.7
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC------CC-ceeEEee------cCCceEEEEEecCccE-------
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------QS-RCIGELS------FRSEVRSVKLRRDRII------- 189 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~------~~-~~~~~~~------~~~~v~~~~~~~~~~~------- 189 (432)
..-+.++++|.+.+-++.... +...+||.. .. ..+-.+. .....+.+.|+....+
T Consensus 23 ~N~WGia~~p~~~~WVadngT-----~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~ 97 (336)
T TIGR03118 23 RNAWGLSYRPGGPFWVANTGT-----GTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI 97 (336)
T ss_pred cccceeEecCCCCEEEecCCc-----ceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence 445788899888777777666 899999976 12 2222332 1346778888754333
Q ss_pred ------EE--eCCeEEEEEcCCCee-----eEEEeec-cCCc-ceEEEecC--CCcEEEEeecCCCCcEEEEEccCCcee
Q 014007 190 ------VV--LEQKIFVYNFADLKL-----LHQIETI-ANPK-GLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRTK 252 (432)
Q Consensus 190 ------~~--~d~~i~i~d~~~~~~-----~~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~~ 252 (432)
+. .||+|.-|...-+.. ...+... ...+ ..+++... ++.++. +.-..++|.+||-.-.++.
T Consensus 98 ~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa--adF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 98 TGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA--ANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred ccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE--eccCCCceEEecCcccccc
Confidence 22 278888887432211 1122111 1222 23555543 334433 2456888998886554332
Q ss_pred e---ee-----ccC-----------CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 253 F---IM-----AHD-----------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 253 ~---~~-----~~~-----------~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
. +. .-- -.|+-..-.++++.=+.|..-|. |-+||+ +|+.++++.....-...+.|+..|
T Consensus 176 ~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~-VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGY-VNVFTL-NGQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcce-EEEEcC-CCcEEEEeccCCcccCCceeeeCh
Confidence 1 00 000 01111122223322233444567 999995 888988886443334567787765
Q ss_pred ------CCCEEEEEeCCCeEEEEEecCCC
Q 014007 314 ------NAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 314 ------~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.|.+|+---.||+|..||..+++
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 45666655579999999999887
No 431
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.94 E-value=3.9 Score=35.52 Aligned_cols=192 Identities=8% Similarity=0.062 Sum_probs=112.2
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE---EeecCCceEEEEEecCccEEE-eCCeEEEEEcCCC
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADL 204 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~ 204 (432)
..-+.++.++.+..+++-.+ .-++|.|+.+...-. .+...+--.++..+-+-.+++ .|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vse~yvyvad~s-------sGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWS-------SGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEecccEEEEEcCC-------CceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence 34455677777777766654 679999998764322 233335555666655555555 3777788888764
Q ss_pred ee---eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcC
Q 014007 205 KL---LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 205 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~ 278 (432)
+. .-...........+++ .|++.++++ .|+-+.+.|+.....-.+.+| ...+.++..+++..+++...+
T Consensus 159 ssP~lagrya~~~~d~~~v~I--SGn~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e 233 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAI--SGNYAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE 233 (370)
T ss_pred CCceeeeeeccCCCCceeEEE--ecCeEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc
Confidence 32 2222222222223444 455666665 789999999988544444433 336888888877766655443
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEE-EECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
| +.+-|..+.+....+..- ....+.++ .+.-.+++......+.-+.+-|+.+..
T Consensus 234 -g--vlivd~s~~ssp~~~gsy-et~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 234 -G--VLIVDVSGPSSPTVFGSY-ETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred -c--eEEEecCCCCCceEeecc-ccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 3 778887766644444321 22222222 233345666666666667777877654
No 432
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.91 E-value=3.2 Score=34.40 Aligned_cols=106 Identities=12% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC-CCCeEEEE-eCCC----Cce--
Q 014007 97 HGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY-PLNKVMIW-DDHQ----SRC-- 168 (432)
Q Consensus 97 ~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~-~~~~v~iw-d~~~----~~~-- 168 (432)
+.+|++++...|.+|++..........+. .-+.|..+.++..|.++++-..+..- ....+|+| |++. .+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 34445444556999999866666667775 66889999999999999986544111 01256665 1111 111
Q ss_pred -------------------e--EEeecCCceEEEEEec-CccEEE-eCCeEEEEEcCCC
Q 014007 169 -------------------I--GELSFRSEVRSVKLRR-DRIIVV-LEQKIFVYNFADL 204 (432)
Q Consensus 169 -------------------~--~~~~~~~~v~~~~~~~-~~~~~~-~d~~i~i~d~~~~ 204 (432)
+ -++....++.+++.-| .|.+++ .++.+.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 1 1222445677777766 577666 5899999987653
No 433
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.82 E-value=8.4 Score=39.60 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=76.4
Q ss_pred EEEEEcCCCeeeEEEeeccC----CcceEEEecCCCcEEEEeecC----------CCCcEEEEEccC-Cc-eeeeec--c
Q 014007 196 IFVYNFADLKLLHQIETIAN----PKGLCAVSQGVGSLVLVCPGL----------QKGQVRVEHYAS-KR-TKFIMA--H 257 (432)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~----------~d~~i~i~d~~~-~~-~~~~~~--~ 257 (432)
|+++|...++.+..+....+ .+..+.|+......+++.++. .+|.++.|++-. +. +..+.. -
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 77777777766655543332 233455555555533333221 234466666533 22 222211 1
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
.+.| .++.|-..++++|-.+ . +++||+...+++++.....-+..|..+++ .+..+++|...-.++++..+..
T Consensus 935 ~~~v--~Ai~~f~~~~LagvG~-~-l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 935 PGPV--GAICPFQGRVLAGVGR-F-LRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred Cccc--eEEeccCCEEEEeccc-E-EEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 2233 3456766666665544 4 99999998888777665433567888887 4577888876666666655543
No 434
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=4.1 Score=35.35 Aligned_cols=223 Identities=11% Similarity=0.092 Sum_probs=124.7
Q ss_pred cCCCCEEEEEc-CCcEEEEEcCCCe-eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---ce
Q 014007 94 NQDHGCFAAGT-DHGFRIYNCDPFR-EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RC 168 (432)
Q Consensus 94 s~~~~~l~~~~-~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---~~ 168 (432)
.-.|++..++. ++++.+.|+.+.. ..+...+. ........++.+.+..+++.-+ +-+.+-|+... ..
T Consensus 135 ~vsGn~aYVadlddgfLivdvsdpssP~lagrya-~~~~d~~~v~ISGn~AYvA~~d-------~GL~ivDVSnp~sPvl 206 (370)
T COG5276 135 YVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYA-LPGGDTHDVAISGNYAYVAWRD-------GGLTIVDVSNPHSPVL 206 (370)
T ss_pred EecCCEEEEeeccCcEEEEECCCCCCceeeeeec-cCCCCceeEEEecCeEEEEEeC-------CCeEEEEccCCCCCeE
Confidence 33577887777 8899999986443 33333332 2333345666676666655433 67888888764 34
Q ss_pred eEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEE--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007 169 IGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (432)
Q Consensus 169 ~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d 245 (432)
+........+.++..+++..+++ .+.-+.+-|..+.+....+ ....++...-.+.-.++..+++- .+.-+.+.|
T Consensus 207 i~~~n~g~g~~sv~vsdnr~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvad---ga~gl~~id 283 (370)
T COG5276 207 IGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVAD---GAKGLPIID 283 (370)
T ss_pred EEEEecCCceEEEEecCCeeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeec---cccCceeEe
Confidence 44444555889999999988887 4777888887776544333 22333433334455566666553 345556666
Q ss_pred ccCCceeeeecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 246 YASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 246 ~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
+....--.+..| ...-..+.. .+.++..+..+ . ..+-|....+......+ ....+.+.+.+-+.+.+.+.
T Consensus 284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn-~-g~vV~~s~~s~m~~~~g--~~ti~~s~~v~~~~q~~y~~ 357 (370)
T COG5276 284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKN-T-GAVVDASPPSMMDKRPG--RPTIGQSCDVSVDTQIIYST 357 (370)
T ss_pred ccCCCCCchhccccCCCccccceEE--ecCeeEeccCC-c-eEEEeCCChhhcccccC--cceEeeecceEEEeeEEEEe
Confidence 665332222211 112222322 34455555444 2 34555443332222221 11233444444456678888
Q ss_pred eCCCeEEEEEec
Q 014007 322 SDKGTVHVFNLK 333 (432)
Q Consensus 322 ~~dg~i~iwd~~ 333 (432)
..++.+.||+..
T Consensus 358 d~~~gl~i~~~~ 369 (370)
T COG5276 358 DYNGGLSIIEYL 369 (370)
T ss_pred ecCCCEEEEEec
Confidence 888889999863
No 435
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.76 E-value=4.7 Score=35.84 Aligned_cols=234 Identities=15% Similarity=0.170 Sum_probs=103.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
...+..|.|..+..-+++|..+. |+....+...... ............+.|..+..+++ +.. + +.+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~iv-G~~------g-~ll~ 85 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIV-GEP------G-LLLH 85 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTE--EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEE-EET------T-EEEE
T ss_pred CCceEEEEEecCCEEEEEecCCE--EEEECCCCccccccccCCCccceeeEEEEEecCCceEEE-cCC------c-eEEE
Confidence 45889999997777788887654 3444333222111 11101134566777777655544 331 3 4444
Q ss_pred eCCCCceeEEee----cCCceEEEEEecCccEEEeCCeEEEEEcCC-CeeeEE-EeeccCCcceEEEecCCCcEEEEeec
Q 014007 162 DDHQSRCIGELS----FRSEVRSVKLRRDRIIVVLEQKIFVYNFAD-LKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 162 d~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
....|+.=..+. .++....+....++...+....=.||...+ |+.-+. .......+..+..+++|..+++.
T Consensus 86 T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs--- 162 (302)
T PF14870_consen 86 TTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVS--- 162 (302)
T ss_dssp ESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEE---
T ss_pred ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEE---
Confidence 444454333332 234444444444444333222223443333 332222 22333455566677887744332
Q ss_pred CCCCcEE-EEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC-CCCceEEE--EEeCCCcCceEEEE
Q 014007 236 LQKGQVR-VEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT-LDGTLLQE--VRRGADRAEIYSLA 310 (432)
Q Consensus 236 ~~d~~i~-i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~-~~~~~~~~--~~~~~~~~~i~~~~ 310 (432)
..|.+. -||--...-.. -......|.+|.|.|++.+.+++ ..|. |++=+. ...+.... .......-.+..++
T Consensus 163 -~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a 239 (302)
T PF14870_consen 163 -SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDLA 239 (302)
T ss_dssp -TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEEE
T ss_pred -CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEEE
Confidence 345554 45544322222 22356789999999998876655 6776 777661 12221111 11101223589999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|.+++...++|+ .|.+ +...+.++
T Consensus 240 ~~~~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 240 YRPPNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp ESSSS-EEEEES-TT-E-EEESSTTS
T ss_pred ecCCCCEEEEeC-CccE-EEeCCCCc
Confidence 999988887775 4433 33444444
No 436
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=1.5 Score=45.73 Aligned_cols=159 Identities=16% Similarity=0.318 Sum_probs=95.7
Q ss_pred EeecCCceEEEEEecC--ccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEE--------ecCCCcEEEEeecCCCCc
Q 014007 171 ELSFRSEVRSVKLRRD--RIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAV--------SQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 171 ~~~~~~~v~~~~~~~~--~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~d~~ 240 (432)
.+.+...-..+-+-|. ..++..|+.+.+|+.+++.....+.+..+.|-.+.+ .|.=+++++++ .--.
T Consensus 74 q~~~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~e 150 (1311)
T KOG1900|consen 74 QFSNIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVE 150 (1311)
T ss_pred HhcCcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccce
Confidence 3333333444555553 334456999999999997777777766665544432 23334555544 2345
Q ss_pred EEEEEccC----Cceee------eeccCCceeEEEEcCCCCEEEEEcCCCceEEE--EECCCC---c-e-----------
Q 014007 241 VRVEHYAS----KRTKF------IMAHDSRIACFALTQDGQLLATSSTKGTLVRI--FNTLDG---T-L----------- 293 (432)
Q Consensus 241 i~i~d~~~----~~~~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v--wd~~~~---~-~----------- 293 (432)
|.++-+.- ..... +......|.|+....+|+.+++|- ||. |+= |...++ + |
T Consensus 151 i~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls 228 (1311)
T KOG1900|consen 151 IVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLS 228 (1311)
T ss_pred EEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHH
Confidence 55554322 22222 223356789999888998776655 445 442 222221 0 1
Q ss_pred -----EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 294 -----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 294 -----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
+-.+. +.+..+|..++.......|.+-++.|+|.+||+...
T Consensus 229 ~lvPs~~~~~-~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 229 SLVPSLLSVP-GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred HhhhhhhcCC-CCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 11111 235679999999888889999999999999999873
No 437
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=93.53 E-value=7.7 Score=37.62 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=104.4
Q ss_pred CeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
+.|.+.| .+.+.+..+. ....|.++.|-.+.-++++ =.-+.+.|+.+.+..+.+-..+-+-.+--++|-++..
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLKIPGfS~YLHP~~e~~ 382 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELKIPGFSDYLHPYDENH 382 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEECccchhceeECCCCe
Confidence 7789998 7777777777 5788999999999988885 3458888988754443332222233344567777777
Q ss_pred EEEeecCCCC----------cEEEEEccCC----ceeee-ec---c----CCceeEEEEcCCCCEEEEEcC-------CC
Q 014007 230 VLVCPGLQKG----------QVRVEHYASK----RTKFI-MA---H----DSRIACFALTQDGQLLATSST-------KG 280 (432)
Q Consensus 230 ~~~~~g~~d~----------~i~i~d~~~~----~~~~~-~~---~----~~~i~~~~~sp~~~~l~~~~~-------dg 280 (432)
+|..+-..+. +|.+||+... ++... .+ . ...-.++.|+++.++|+.--. -.
T Consensus 383 LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~~~~~~~~~~ 462 (521)
T PF09826_consen 383 LLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVSSSYGYFNFQ 462 (521)
T ss_pred EEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEEEccCccccc
Confidence 7765322233 4677998761 11111 11 0 112357888888777765333 12
Q ss_pred ceEEEEECC-CC--ceEEEEEeCCCcC-------ceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 281 TLVRIFNTL-DG--TLLQEVRRGADRA-------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 281 ~~i~vwd~~-~~--~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
. +.++++. .. +....+. |.. .+....+. +..|.+.+ ++.|+++|+++.
T Consensus 463 g-~~v~~i~~~~g~~~~g~i~---h~~~~~~~~~~~~R~lyi--~d~lYtvS-~~~i~~~~l~t~ 520 (521)
T PF09826_consen 463 G-AYVFSIDPEDGFTLKGKIT---HPSPDYYYSYQIQRSLYI--GDTLYTVS-DNGIKAYDLNTL 520 (521)
T ss_pred e-EEEEEEeCCCCeEEEEEEE---ccCcccccccceeEEEEE--CCEEEEEE-CCEEEEEehHhc
Confidence 3 7788876 22 2333333 333 25555553 34666665 567999998875
No 438
>PHA03098 kelch-like protein; Provisional
Probab=93.49 E-value=8.2 Score=37.81 Aligned_cols=188 Identities=13% Similarity=0.157 Sum_probs=83.8
Q ss_pred CCCCEEEEEc-CC------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 95 QDHGCFAAGT-DH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 95 ~~~~~l~~~~-~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
.++.+++.|+ +. .+..||..+.+......+. ....-.++....+..++++|..+ ......+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~--~~R~~~~~~~~~~~lyv~GG~~~-~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELI--YPRKNPGVTVFNNRIYVIGGIYN-SISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCC--cccccceEEEECCEEEEEeCCCC-CEecceEEEEcCCCCc
Confidence 3455666665 21 2667776655543222222 11112223333445555555432 1112568889887664
Q ss_pred eeE--EeecCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCc-ceEEEecCCCcEEEEeec
Q 014007 168 CIG--ELSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 168 ~~~--~~~~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 235 (432)
-.. .+.....-.+++.. ++.+.+.. +.+..||+.+.+-.. +.....+. ...+... ++.+++. +|
T Consensus 370 W~~~~~lp~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~-GG 445 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNV-NNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPISHYGGCAIYH-DGKIYVI-GG 445 (534)
T ss_pred eeeCCCcCcCCccceEEEE-CCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCccccCceEEEE-CCEEEEE-CC
Confidence 322 12122111222333 33333321 357888887654322 11111111 1122223 3445544 34
Q ss_pred CCC-------CcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCc
Q 014007 236 LQK-------GQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGT 292 (432)
Q Consensus 236 ~~d-------~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~ 292 (432)
... ..+.+||..+..-..+... ......+.+ ++++++.|+.+ .. |.+||..+.+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~ 514 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINE-IEVYDDKTNT 514 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccce-eEEEeCCCCE
Confidence 221 2378888877544333211 111112222 67777777754 34 7788876654
No 439
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.44 E-value=5.8 Score=35.93 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=42.4
Q ss_pred ceeEEEEcCCCCEEEEEcCC------CceEEEEECCCCceEEEEEe-------------CCCcCceEEEEECCCCCEEEE
Q 014007 260 RIACFALTQDGQLLATSSTK------GTLVRIFNTLDGTLLQEVRR-------------GADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~d------g~~i~vwd~~~~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~~ 320 (432)
...+|++.++|.++++.-.+ .. |+.++.. |+.+..+.. ...+...-+|+++|||+.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~-I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPR-IRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCE-EEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 45688887788877776666 66 8888865 766555421 113357889999999996666
Q ss_pred Ee
Q 014007 321 SS 322 (432)
Q Consensus 321 ~~ 322 (432)
+.
T Consensus 164 ~~ 165 (326)
T PF13449_consen 164 AM 165 (326)
T ss_pred EE
Confidence 54
No 440
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.35 E-value=1.3 Score=35.82 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=24.9
Q ss_pred CCceEEEEccCC------CEEEEEecCCeEEEEEec
Q 014007 381 GSPYIVAFGHQK------NTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 381 ~~v~~~~~s~~~------~~l~~~~~dg~v~iw~~~ 410 (432)
..|..++|||-| ..|++.+.+|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 368899999943 479999999999998754
No 441
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=2 Score=39.59 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE--EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ--EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
...++|.++.||+|.+.||+--.+.+ |.+++....+... ..+.......|....|+.+ .-+|..+..| +-+|-+.
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~-v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKT-VDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCce-EEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence 34669999999999999999999999 9999873322211 1111112346899999865 5677666555 7777765
Q ss_pred CCC
Q 014007 334 VNS 336 (432)
Q Consensus 334 ~~~ 336 (432)
..+
T Consensus 141 pek 143 (657)
T KOG2377|consen 141 PEK 143 (657)
T ss_pred hhh
Confidence 543
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.02 E-value=10 Score=37.52 Aligned_cols=193 Identities=12% Similarity=0.119 Sum_probs=104.4
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE--e--e-cCCceEEEE
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L--S-FRSEVRSVK 182 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~--~-~~~~v~~~~ 182 (432)
|+||++.. .... ..+ -....++.|.|+.+...++..- + |++++|++. |+.+.. . + ....|....
T Consensus 66 I~If~~sG-~lL~-~~~--w~~~~lI~mgWs~~eeLI~v~k-~-----g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~ 134 (829)
T KOG2280|consen 66 IRIFNISG-QLLG-RIL--WKHGELIGMGWSDDEELICVQK-D-----GTVHVYGLL-GEFIESNSVGFESQMSDIVECR 134 (829)
T ss_pred EEEEeccc-cchH-HHH--hcCCCeeeecccCCceEEEEec-c-----ceEEEeecc-hhhhcccccccccccCceeEEE
Confidence 77887643 2221 222 1333889999998876665543 3 999999964 333333 2 1 345566677
Q ss_pred EecCccEEEe-CCeEEEEEcCCCeeeEEEee---ccCCcceEEEecCCCcEEEEeecCCCCc--EEEEEccC--Cceeee
Q 014007 183 LRRDRIIVVL-EQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGSLVLVCPGLQKGQ--VRVEHYAS--KRTKFI 254 (432)
Q Consensus 183 ~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~d~~--i~i~d~~~--~~~~~~ 254 (432)
+..+|..+.. +|.+.+.+-...-.+..+.. ..-+-.+....+++....+.. + -+-. ..++.... .....+
T Consensus 135 ~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll-~-v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 135 FFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL-D-VDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE-e-echhhhhcccceeccccccccc
Confidence 7778877664 66665544222112222221 111112333333333222211 0 0100 01111222 122222
Q ss_pred eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC
Q 014007 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (432)
Q Consensus 255 ~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 315 (432)
......+..+..||+.++|+--...|. |.+-+....+++..+....+ .....++|.-+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~~G~-i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTETGK-IWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEecCCc-EEEEecchhhhhhccCCCCC-CchHhceeecCC
Confidence 233456788999999999999999999 99988888888777774433 333366665443
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.99 E-value=8.1 Score=36.35 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=106.0
Q ss_pred eEEEEEecCccEEEeCCeEEEEEcCCCeee------EEEeecc---CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007 178 VRSVKLRRDRIIVVLEQKIFVYNFADLKLL------HQIETIA---NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (432)
Q Consensus 178 v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 248 (432)
-..+.|..+..++.-++.|-+|.-.....+ ..+.... -...-+-++-+...+++. .|.....++-.|+..
T Consensus 421 ~L~Vgfrn~rsyVtR~n~IGVFk~~de~~LeF~aaiknvs~~~GKSidp~K~mlh~~dssli~~-dg~~~~kLykmDIEr 499 (776)
T COG5167 421 HLVVGFRNERSYVTRGNSIGVFKNTDEGSLEFKAAIKNVSDDGGKSIDPEKIMLHDNDSSLIYL-DGGERDKLYKMDIER 499 (776)
T ss_pred eEEEEEcccceeEeeCCeeeeEeccCCcceehhhhhhhccCCCCCcCChhhceeecCCcceEEe-cCCCcccceeeeccc
Confidence 344555566666666888888865442211 1111110 011123333344444444 355666676677766
Q ss_pred Ccee-eeeccCCceeEEEEcCCC--------CEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECC----C
Q 014007 249 KRTK-FIMAHDSRIACFALTQDG--------QLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSS----N 314 (432)
Q Consensus 249 ~~~~-~~~~~~~~i~~~~~sp~~--------~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~----~ 314 (432)
+++. .+..|... -+.|.|+. ..|+ |-.+.. |.-.|.+ .|..+.... ....++.-.||. .
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~s-vFrIDPR~~gNKi~v~e---sKdY~tKn~Fss~~tTe 572 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYS-VFRIDPRARGNKIKVVE---SKDYKTKNKFSSGMTTE 572 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccc-eEEecccccCCceeeee---ehhcccccccccccccc
Confidence 5543 44555443 56777743 2343 444444 4444544 233333222 122333333432 4
Q ss_pred CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007 315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT 394 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 394 (432)
..++|+++..|.|++||.-..+... .+.+-...|..+..+.+|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKt-----------------------------------alP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKT-----------------------------------ALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhh-----------------------------------cCcccccceeeeEeecCCcE
Confidence 4589999999999999975443111 11222345777888899999
Q ss_pred EEEEecCCeEEEEEecCCCCCcceEe
Q 014007 395 VVILGMDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 395 l~~~~~dg~v~iw~~~~~~~~~~~~~ 420 (432)
|++.|. ..+.+-++....|+...++
T Consensus 618 ilaTCk-~yllL~d~~ik~g~~aGr~ 642 (776)
T COG5167 618 ILATCK-NYLLLTDVPIKYGQPAGRD 642 (776)
T ss_pred EEEeec-ceEEEEecccccCCccccc
Confidence 887774 4666666655555444444
No 444
>PHA03098 kelch-like protein; Provisional
Probab=92.99 E-value=9.8 Score=37.28 Aligned_cols=193 Identities=15% Similarity=0.170 Sum_probs=86.6
Q ss_pred eeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEeC--------CeEEEEEcCCCee
Q 014007 137 FRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKL 206 (432)
Q Consensus 137 ~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~ 206 (432)
...+..++++|..........+..||..+.+-...-. ....-.+++.. ++.+.+.. ..+..||..+.+-
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3444555555543211111368889987765422111 11111222222 34433321 2577888776542
Q ss_pred eEEEeeccCCcceEEEecCCCcEEEEeecCC-C----CcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCC
Q 014007 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQ-K----GQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d----~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d 279 (432)
.. ......+....+....++.+++. +|.. + ..+..||..+..-........ .-.++. .-++++++.|+.+
T Consensus 371 ~~-~~~lp~~r~~~~~~~~~~~iYv~-GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 447 (534)
T PHA03098 371 RE-EPPLIFPRYNPCVVNVNNLIYVI-GGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGIS 447 (534)
T ss_pred ee-CCCcCcCCccceEEEECCEEEEE-CCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCcc
Confidence 21 11111111122222234455544 3421 1 457888887644333221111 111222 2356677777643
Q ss_pred --------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
.. +.+||..+.+-...-...........+.+ +++.++.|+.+ +.|.+||..+.+
T Consensus 448 ~~~~~~~~~~-v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNI-VESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccce-EEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 23 78888877654321110000111122222 67777777653 468888887764
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.91 E-value=6.4 Score=34.89 Aligned_cols=206 Identities=10% Similarity=0.064 Sum_probs=109.2
Q ss_pred CeEEEEEcCCCCEEEE--Ec----C----C---cEEEEEcCCCeeEEEeeccc---CcceeEEEEeeeC------CeEEE
Q 014007 87 TLLHISFNQDHGCFAA--GT----D----H---GFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRC------NILAL 144 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~--~~----~----~---~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~------~~~~~ 144 (432)
.|..+...+++++-+. |. . . .|.+||+.+.+......+.. .....+..+.... ++.+.
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aY 81 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAY 81 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEE
Confidence 4778888888886554 32 1 1 28889999988765555541 1345666666654 24566
Q ss_pred ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEec
Q 014007 145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 145 ~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (432)
++-... +.|.++|+.+++..+.+.+. +...|+...+..+|...-| ..+ +..++.++
T Consensus 82 ItD~~~-----~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~--~dg------------~~gial~~ 137 (287)
T PF03022_consen 82 ITDSGG-----PGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQW--PDG------------IFGIALSP 137 (287)
T ss_dssp EEETTT-----CEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEE--TTS------------EEEEEE-T
T ss_pred EeCCCc-----CcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEec--CCC------------ccccccCC
Confidence 666655 78999999998876655531 1111222223334432222 122 23344433
Q ss_pred ---CCCcEEEEeecCCCCcEEEEEccCC---------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007 225 ---GVGSLVLVCPGLQKGQVRVEHYASK---------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (432)
Q Consensus 225 ---~~~~~~~~~~g~~d~~i~i~d~~~~---------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw 286 (432)
+++.+++..- ... ++|.+.+. .++.+-........++++++|.++++--..+. |..|
T Consensus 138 ~~~d~r~LYf~~l--ss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a-I~~w 212 (287)
T PF03022_consen 138 ISPDGRWLYFHPL--SSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA-IGCW 212 (287)
T ss_dssp TSTTS-EEEEEET--T-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE-EEEE
T ss_pred CCCCccEEEEEeC--CCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe-EEEE
Confidence 5555554431 112 23333321 11222111245678889999998888888888 9999
Q ss_pred ECCCC---ceEEEEEeCCC-cCceEEEEECC--CCCEEEEE
Q 014007 287 NTLDG---TLLQEVRRGAD-RAEIYSLAFSS--NAQWLAVS 321 (432)
Q Consensus 287 d~~~~---~~~~~~~~~~~-~~~i~~~~~s~--~~~~l~~~ 321 (432)
+..+. +....+..... -..+.++.+.+ +|.+.+..
T Consensus 213 ~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 213 DPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred eCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 97651 12223332222 35788899988 66655544
No 446
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=92.89 E-value=5.4 Score=36.49 Aligned_cols=171 Identities=16% Similarity=0.191 Sum_probs=92.4
Q ss_pred eEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 157 KVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
.|++.| +.+..+..+. ....|.++.|..|-.++++ -.-+.+.|+...+..+.+...+-+-.+--++|-|++.+
T Consensus 407 ~vYilD-e~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLKIPGfS~YLHpigen~~ 485 (603)
T COG4880 407 AVYILD-ENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELKIPGFSEYLHPIGENRL 485 (603)
T ss_pred eeEEEc-CCCcEEEEEeccCCCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEecCCchhhccccCCCcE
Confidence 345555 3445555555 5678999999988888774 44577888877554444433222333456788888888
Q ss_pred EEeecCCCCcEEE--EEccC----Cceeeee--cc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 231 LVCPGLQKGQVRV--EHYAS----KRTKFIM--AH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 231 ~~~~g~~d~~i~i--~d~~~----~~~~~~~--~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
+.. |..+|.+++ ||+.. +++.... .. -..-++..|.|...+++.-...+. .|+-++.|..+..
T Consensus 486 lGv-G~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dhHAFl~d~~~~ifFlPay~~g--yif~iedg~kl~k-- 560 (603)
T COG4880 486 LGV-GAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDHHAFLYDPEAEIFFLPAYLGG--YIFFIEDGSKLRK-- 560 (603)
T ss_pred EEe-ecccCCceEEEEeccCCCCchhhhheehhhhcchhhhccceeecCCcccEEEecccCcc--EEEEEecCceeee--
Confidence 875 556777654 77654 1111111 00 011134455555554444333443 3566667643322
Q ss_pred eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 299 RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 299 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
...++..+...-|-.| +|...+. ..+.++|-.+.+
T Consensus 561 ~~e~k~na~RA~fi~d--ylY~vg~-~ev~~ldenswe 595 (603)
T COG4880 561 RAERKLNADRAFFIKD--YLYLVGG-NEVWKLDENSWE 595 (603)
T ss_pred hhhhcccceeeEEecc--eEEEecc-ceeEEeccchHh
Confidence 2224455555556444 4444332 246666665554
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.51 E-value=0.019 Score=52.39 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=94.0
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE----eCCeEEEEEcCC
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV----LEQKIFVYNFAD 203 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----~d~~i~i~d~~~ 203 (432)
+........|.+.+.-++.++.+ ..|..|| +.++.+.....++....++|..++..++ ..+.+++||+.+
T Consensus 33 alv~pi~~~w~~e~~nlavaca~-----tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ 106 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACAN-----TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS 106 (615)
T ss_pred hccccceeeEecCCCceehhhhh-----hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh
Confidence 33444455666665556655555 7888898 5666666666777888899998877665 278999999976
Q ss_pred CeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcCCCc
Q 014007 204 LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGT 281 (432)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~ 281 (432)
... ++++ +....-.-..|++......+ |...|.+.+++....+.....+ |...++++++.+.+. .+.++.|..
T Consensus 107 eyt-qqLE~gg~~s~sll~wsKg~~el~i---g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 107 EYT-QQLESGGTSSKSLLAWSKGTPELVI---GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred hhH-HHHhccCcchHHHHhhccCCccccc---cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 432 1221 11222223567776665543 3478999999988855544445 999999999999874 445555543
No 448
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.43 E-value=11 Score=37.20 Aligned_cols=170 Identities=13% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC--CCcCceEEEEECCCC
Q 014007 238 KGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFSSNA 315 (432)
Q Consensus 238 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~~~~s~~~ 315 (432)
...|+||++.+..+..+......+-.+.|+.+. .|++-..+|+ +++|++. |+.+.....+ .....|..+.|..+|
T Consensus 63 ~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~-v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNISGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGT-VHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEeccccchHHHHhcCCCeeeecccCCc-eEEEEeccce-EEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 356889998887776665555588899999766 4667789999 9999974 3333332111 112346666665566
Q ss_pred CEEEEEeCCCeE-EEEEecCCC--CCCCCCCC----CCCCCCCCCCCceeEeecc----cceee---cceeeEEEEecCC
Q 014007 316 QWLAVSSDKGTV-HVFNLKVNS--GSARSEPR----STSDPTLPTSSLSFIKGVL----PKYFS---SEWSVAQFRLVEG 381 (432)
Q Consensus 316 ~~l~~~~~dg~i-~iwd~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~ 381 (432)
-.+.+. +|.+ .+-+..... ..+..+.. ..+....+......+-.+. +.... .......+....+
T Consensus 140 Vavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 VAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred eEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 444443 3443 333333322 11111110 1111122222222111111 11000 0000111222235
Q ss_pred CceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
.+..+..||+.++|+-=+.+|.+.+-..|+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 6788999999999999999999988777664
No 449
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.85 E-value=11 Score=35.24 Aligned_cols=143 Identities=12% Similarity=0.082 Sum_probs=83.9
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCc-----eeEEeecCCceEEEEEec-----CccEEE--eCCeEEEEEcCC--Ce
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELSFRSEVRSVKLRR-----DRIIVV--LEQKIFVYNFAD--LK 205 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~~~--~d~~i~i~d~~~--~~ 205 (432)
+...++.|+.. |.++||+...+. .+.+.+...+|..+..-+ +...++ .-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~-----G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYS-----GILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccc-----cEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCC
Confidence 44567777777 999999986543 344455788998887643 333444 377888888732 11
Q ss_pred -------eeEEEeeccCCcc--eEEEecCCC-c-EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE
Q 014007 206 -------LLHQIETIANPKG--LCAVSQGVG-S-LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA 274 (432)
Q Consensus 206 -------~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~ 274 (432)
.+..+..|.-... .++.-+-|. . .-++|.-+.||.+.+|+-+.-....+...---...+.|.+.-..++
T Consensus 111 ~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEE
Confidence 2223333322222 222222221 1 1122233589999999987755443333233334567778778888
Q ss_pred EEcCCCceEEEEEC
Q 014007 275 TSSTKGTLVRIFNT 288 (432)
Q Consensus 275 ~~~~dg~~i~vwd~ 288 (432)
+++.+.. |..|..
T Consensus 191 t~sss~~-l~~Yky 203 (418)
T PF14727_consen 191 TASSSWT-LECYKY 203 (418)
T ss_pred EecCcee-EEEecH
Confidence 8888877 877754
No 450
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.80 E-value=1.4 Score=25.52 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCCCEEEEEcC-CCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 268 QDGQLLATSST-KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 268 p~~~~l~~~~~-dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
|++++|+++.. ++. |.++|..+++.+..+..+. ....++|
T Consensus 1 pd~~~lyv~~~~~~~-v~~id~~~~~~~~~i~vg~---~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNT-VSVIDTATNKVIATIPVGG---YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCE-EEEEECCCCeEEEEEECCC---CCceEEe
Confidence 57777776654 566 9999999999988888542 3344544
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.72 E-value=15 Score=36.48 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007 85 PPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (432)
...++++.-+|.|..++.+. |+.|++|+..+.+.. +... ...+-..+.|...|++.++.+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qs--ki~~--~~~p~~nlv~tnhgl~~~tsd 74 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQS--KICE--EAKPKENLVFTNHGLVTATSD 74 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchh--hhhh--hcCCccceeeeccceEEEecc
Confidence 34577888889999999888 555999998665543 1111 222333455666666666654
No 452
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.71 E-value=1.3 Score=37.32 Aligned_cols=66 Identities=12% Similarity=0.177 Sum_probs=44.0
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe---------------ecCCceEEEEEecCccEEE--eC
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL---------------SFRSEVRSVKLRRDRIIVV--LE 193 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~--~d 193 (432)
.+..+....+...+++.. |.+++||+.+++.+..- .....|..+.++.+|.-++ ++
T Consensus 14 ~~~~l~~~~~~Ll~iT~~-------G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn 86 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSS-------GLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN 86 (219)
T ss_pred ceEEEEeCCCEEEEEeCC-------CeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence 444455555555555554 99999999988754432 1235677788888887666 47
Q ss_pred CeEEEEEcCC
Q 014007 194 QKIFVYNFAD 203 (432)
Q Consensus 194 ~~i~i~d~~~ 203 (432)
|..+.|+..-
T Consensus 87 g~~y~y~~~L 96 (219)
T PF07569_consen 87 GDSYSYSPDL 96 (219)
T ss_pred CCEEEecccc
Confidence 8888888643
No 453
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.56 E-value=7.1 Score=39.40 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=53.5
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCC-CCCCCCCCCCCCCCCCCCCCceeEeec-ccceeecceeeEEEEecCC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN-SGSARSEPRSTSDPTLPTSSLSFIKGV-LPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 381 (432)
-.|..+.++|+|++|+..|..| |.|-.+... .....+ ..+......+.. +... + ....+..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~---------~~g~~~i~Crt~~v~~~------~-~~~~~~~ 147 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEF---------EDGKKEINCRTVPVDER------F-FTSNSSL 147 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccc---------cCCCcceeEEEEEechh------h-ccCCCCc
Confidence 4688999999999999998766 556555431 100000 000000001000 0000 0 0112335
Q ss_pred CceEEEEccC---CCEEEEEecCCeEEEEEecC
Q 014007 382 SPYIVAFGHQ---KNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 382 ~v~~~~~s~~---~~~l~~~~~dg~v~iw~~~~ 411 (432)
.|..+.|+|. +..|++-+.|+.+++|++..
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 6889999995 58999999999999999953
No 454
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.26 E-value=5 Score=37.38 Aligned_cols=42 Identities=7% Similarity=-0.085 Sum_probs=31.8
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeE
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREI 119 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~ 119 (432)
...+......+.+|..+|++++.|+.++-| |.|+|+..+..+
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv 342 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV 342 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence 345556677899999999998888876555 999998765443
No 455
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=2.9 Score=43.10 Aligned_cols=114 Identities=10% Similarity=-0.021 Sum_probs=72.2
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce------eeee------ccCCceeEEEEcCCCC-EEEEEcCCCce
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT------KFIM------AHDSRIACFALTQDGQ-LLATSSTKGTL 282 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~~------~~~~~i~~~~~sp~~~-~l~~~~~dg~~ 282 (432)
++..+...+|+....+..+. .+-.|..||++.-.. ..+. .......++.|.|.-. ..+.+..|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~ts-ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls- 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTS-NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS- 179 (1405)
T ss_pred cceEEEeccCCceEEEEEec-CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-
Confidence 34455566665554444433 456788899886211 1111 1233456788888532 3456677888
Q ss_pred EEEEECCCCc-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 283 VRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 283 i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
|++..+.... ....+. .....++++|+|.|+.++.|-..|++.-|...-
T Consensus 180 l~V~~~~~~~~~v~s~p---~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP---VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred hhhhhhhhhhhhhcccC---cccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 8888764332 222333 346789999999999999999999998886543
No 456
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.20 E-value=1.9 Score=39.68 Aligned_cols=164 Identities=13% Similarity=0.140 Sum_probs=95.4
Q ss_pred eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee--e-eccCC----cee-EEEEcCCCCEEEEEcC
Q 014007 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF--I-MAHDS----RIA-CFALTQDGQLLATSST 278 (432)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~--~-~~~~~----~i~-~~~~sp~~~~l~~~~~ 278 (432)
+..+......+..+-+.|||+.+++.+ | ..+.++++.+..... + ....+ .|+ .+..-..|.-|.+++.
T Consensus 213 i~~L~~~~~~v~qllL~Pdg~~LYv~~-g---~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDGKTLYVRT-G---SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhcCCCccchHhhEECCCCCEEEEec-C---CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 333444556677788999999998875 3 678888887744322 1 11111 122 1222335667888999
Q ss_pred CCceEEEE-ECCCCc-----eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 279 KGTLVRIF-NTLDGT-----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 279 dg~~i~vw-d~~~~~-----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
||. |.-| |.+.+. .++.++. ....+.-+.-..+.+-+++-+..|++.++.-...+.+.
T Consensus 289 dG~-vsQWFdvr~~~~p~l~h~R~f~l--~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL------------- 352 (733)
T COG4590 289 DGL-VSQWFDVRRDGQPHLNHIRNFKL--APAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL------------- 352 (733)
T ss_pred CCc-eeeeeeeecCCCCcceeeecccc--CcccceeeccccccceEEEEcCCCceeeeecccCccee-------------
Confidence 998 7655 655432 1222221 11334444433345567777788888877665544221
Q ss_pred CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
+..--..+..+++||.+.+|++-. .|.++++.++...-
T Consensus 353 -----------------------~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 353 -----------------------FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred -----------------------hhhhhcCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 000112356789999999987543 57789988876543
No 457
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.08 E-value=4.4 Score=38.31 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=25.3
Q ss_pred CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
..|..++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4488899988889999999999999999977
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=90.84 E-value=16 Score=35.22 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=77.9
Q ss_pred CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC-----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..+..||..+++-... +.....-.+++. -++.+.+.. ..+..||..+++-.. +.....+....+..--++.
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l~~~r~~~~~~~~~g~ 364 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSLLKPRCNPAVASINNV 364 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcceEEE-ECCEEEEECCcCCCCceEEEECCCCeEEE-CCCCCCCCcccEEEEECCE
Confidence 4678888877643222 221111122222 344444432 357788876543221 1111122222222233345
Q ss_pred EEEEeecCC--CCcEEEEEccCCceeeeeccCCc--eeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007 229 LVLVCPGLQ--KGQVRVEHYASKRTKFIMAHDSR--IACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 229 ~~~~~~g~~--d~~i~i~d~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
++++ +|.. ...+..||.++..-.....-..+ -.+++ .-+|++.+.|+ . +.+||..+.+-...-.......
T Consensus 365 IYvi-GG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~GG---~-~e~ydp~~~~W~~~~~m~~~r~ 438 (480)
T PHA02790 365 IYVI-GGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVGR---N-AEFYCESSNTWTLIDDPIYPRD 438 (480)
T ss_pred EEEe-cCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEECC---c-eEEecCCCCcEeEcCCCCCCcc
Confidence 5544 3421 23567788776433322111111 11221 23666666663 5 7788887664432211110111
Q ss_pred ceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 305 EIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
....+. -+|+..+.|+.+ ..+..||..+.+
T Consensus 439 ~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 439 NPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 222222 367777887754 357788887765
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.79 E-value=1.4 Score=40.48 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=89.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcc---eeEE-EEeeeCCeEEEecCCCCCCCCCC
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG---IGVV-EMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
+......|..+-..|||+.|.+-+...+.++++++......+......+ ..|. .+..-..+..+...+.| |
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d-----G 290 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED-----G 290 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC-----C
Confidence 4455677888999999999888877788899887654433222221111 1111 11112344555566666 8
Q ss_pred eEEEE-eCCCC-c----eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC
Q 014007 157 KVMIW-DDHQS-R----CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 157 ~v~iw-d~~~~-~----~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (432)
.|.-| |+..+ . .++.++ ...++..+.-..+.+-+++ +|++.++.....+.+. ++........++++|.+
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL-~~~~~~~~~~~~~Sp~~ 369 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL-FERAYQAPQLVAMSPNQ 369 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee-hhhhhcCcceeeeCccc
Confidence 88777 44332 1 223333 2233433332223333332 6777777644333322 22223356679999999
Q ss_pred CcEEEEeecCCCCcEEEEEccCC
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASK 249 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~ 249 (432)
+++++ ...|.++++.+++.
T Consensus 370 ~~Ll~----e~~gki~~~~l~Nr 388 (733)
T COG4590 370 AYLLS----EDQGKIRLAQLENR 388 (733)
T ss_pred chhee----ecCCceEEEEecCC
Confidence 87653 25688999988773
No 460
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.73 E-value=12 Score=33.44 Aligned_cols=73 Identities=19% Similarity=0.355 Sum_probs=53.8
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc-C--ceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR-A--EIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~-~--~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
-|++|...++|.+|+++-.-.. |.+.|-++|+.+..+.+.... - .-...+|-.|-+++-.+..++.|.|||=.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~-i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTST-IYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCE-EEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3677788889999999988888 999999999999888653110 0 11235555566666666788999999874
No 461
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.17 E-value=18 Score=34.77 Aligned_cols=137 Identities=9% Similarity=0.005 Sum_probs=68.9
Q ss_pred CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCc---eeEEEEcCCC
Q 014007 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR---IACFALTQDG 270 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~---i~~~~~sp~~ 270 (432)
+...++|. .|.....+.........+..-++|..+ +.. ...+..+|+.++.+......... =+.+...|+|
T Consensus 128 ~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll--~~~---~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 128 SYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLL--IGS---GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EE--EEE---BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred ceEEEECC-CccEEEEEccCccccceeeEcCCCCEE--Eec---CCceEEEcCCCCEEEeeecCCcccccccccEECCCC
Confidence 46777774 566665554433332225556666533 322 27888888877655443322211 2467778999
Q ss_pred CEEEEEcC-------------CCceEEEEECCCCceEEEEEeCCCc-------------------------CceEEEEEC
Q 014007 271 QLLATSST-------------KGTLVRIFNTLDGTLLQEVRRGADR-------------------------AEIYSLAFS 312 (432)
Q Consensus 271 ~~l~~~~~-------------dg~~i~vwd~~~~~~~~~~~~~~~~-------------------------~~i~~~~~s 312 (432)
++|+.+.. ... |..+| .+|+.+..+....|- .-+.++.+.
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 99888772 112 55566 667666655431110 137889998
Q ss_pred C-CCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 313 S-NAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 313 ~-~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
+ ++.+|+++-.-..|...|.++++..
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 8 6666666666668888887777643
No 462
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=90.14 E-value=11 Score=38.18 Aligned_cols=143 Identities=15% Similarity=0.272 Sum_probs=85.8
Q ss_pred EEEeCCeEEEEEcCCCeeeEEEeeccCCcceEE-EecCC-------CcEEEEeecCCCCcEEEEEc----cCCceeeeec
Q 014007 189 IVVLEQKIFVYNFADLKLLHQIETIANPKGLCA-VSQGV-------GSLVLVCPGLQKGQVRVEHY----ASKRTKFIMA 256 (432)
Q Consensus 189 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~g~~d~~i~i~d~----~~~~~~~~~~ 256 (432)
++..|+.+.+|+...+...+.+....+.+..+. +.|.. .++++++ ....+.++-+ +++++..+..
T Consensus 97 WiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA---T~~e~~ilgvs~d~~T~Els~fnT 173 (1263)
T COG5308 97 WITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA---TEKEVMILGVSKDTKTGELSLFNT 173 (1263)
T ss_pred EEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh---hhheeeEEEEEeccccceeEEEec
Confidence 444699999999997766665554444443332 23333 2333333 2344444432 3344433322
Q ss_pred ------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECC----C----Cc-------------eEE-EEEeCCCcCceEE
Q 014007 257 ------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL----D----GT-------------LLQ-EVRRGADRAEIYS 308 (432)
Q Consensus 257 ------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~----~----~~-------------~~~-~~~~~~~~~~i~~ 308 (432)
..-.|.|+.-+.+|+.+++|..|- .+|.+. + .+ .+. .+..+.+...|..
T Consensus 174 gl~vsvqGinV~civs~e~GrIFf~g~~d~---nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Q 250 (1263)
T COG5308 174 GLVVSVQGINVRCIVSEEDGRIFFGGENDP---NVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQ 250 (1263)
T ss_pred ceEEeccCceeEEEEeccCCcEEEecCCCC---CeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhh
Confidence 235688888888999998888873 355442 1 01 111 1111234467889
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
++.......|.+-+....|+-|.+.....
T Consensus 251 l~vDqsRg~ly~Lr~kS~Vray~itkngl 279 (1263)
T COG5308 251 LAVDQSRGLLYVLRKKSAVRAYSITKNGL 279 (1263)
T ss_pred eeecccccceeeecccceeeeEeeecccc
Confidence 99988878888888899999999877653
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=8.9 Score=36.22 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=53.6
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEEC----------CCCceEEEEEe---------CCCcCceEEEEECCCC---CE
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNT----------LDGTLLQEVRR---------GADRAEIYSLAFSSNA---QW 317 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~----------~~~~~~~~~~~---------~~~~~~i~~~~~s~~~---~~ 317 (432)
.|..+..++.|..++-.+.+|. .|-.+ ++|+.....+. ....-.+...+|+|+. ..
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi--~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGL--MVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEecCCCceEEEecCCee--EEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 5778889999999999999995 33333 24433222111 1111357788999975 56
Q ss_pred EEEEeCCCeEEEEEecCCCCCC
Q 014007 318 LAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 318 l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
|..-+.|+.|++||+...+.+.
T Consensus 183 L~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEEecCcEEEEEecCCcchhh
Confidence 7777889999999998877553
No 464
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=90.04 E-value=20 Score=34.92 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=60.9
Q ss_pred CCCCEEEEEcCCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC------------------CCC
Q 014007 95 QDHGCFAAGTDHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ------------------YPL 155 (432)
Q Consensus 95 ~~~~~l~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~------------------~~~ 155 (432)
.||++|.+..++.|.|++..+ .+......+. -...+..+-.+.+.+.+++...... ...
T Consensus 20 TDG~yIY~v~~~~l~Iida~p~~~~~~~s~I~--~~~~~~eLyl~gdrLvVi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (521)
T PF09826_consen 20 TDGEYIYVVSGGRLYIIDAYPAEEMKVVSRID--LDGSPQELYLDGDRLVVIGSSYEYYPREPDIDSESGDTPYYYYKSS 97 (521)
T ss_pred ECCCEEEEEeCCEEEEEECCCchhceEEEEEe--cCCChhheEEcCCEEEEEEeccccccccccccccccccccccCCce
Confidence 389999999988899999843 2222223332 1112666666666666665332100 112
Q ss_pred CeEEEEeCCCC---ceeEEeecCCceEEEEEecCccEEEeCCeEEEE
Q 014007 156 NKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVY 199 (432)
Q Consensus 156 ~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~ 199 (432)
-.+.+||+... +.+.++...+...+.....+..++++...+.++
T Consensus 98 t~i~vYDIsD~~~P~~~~~~~~~G~yvsSR~ig~~vy~Vt~~~~~~~ 144 (521)
T PF09826_consen 98 TKITVYDISDPSNPKLLREIEIEGSYVSSRKIGDYVYLVTNSYPNYY 144 (521)
T ss_pred eEEEEEECCCCCCceEEEEEEeeeEEEeEEEECCEEEEEEecCCccc
Confidence 46888888654 345555556666666666666666666655555
No 465
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.52 E-value=17 Score=33.56 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=80.2
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCC--ceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccC
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIAN 215 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~ 215 (432)
++..+++. .+ +.++.+|..+|+.+....... .+..-..-.++..... ++.+...|..+++.+........
T Consensus 111 ~G~i~~g~-~~-----g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 111 DGKIYVGS-WD-----GKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred CCeEEEec-cc-----ceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc
Confidence 66655544 44 789999988999998888444 2222233345555553 68899889888887766543221
Q ss_pred -Cc-ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCcee-----EEEEcCC-----CCEEEEEcCCCceE
Q 014007 216 -PK-GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIA-----CFALTQD-----GQLLATSSTKGTLV 283 (432)
Q Consensus 216 -~~-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~-----~~~~sp~-----~~~l~~~~~dg~~i 283 (432)
.. ..-........+++...+. ++.+.-.|...+...--..+...+. ....... +.-+..++.++. +
T Consensus 185 ~~~~~~~~~~~~~~~vy~~~~~~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~-~ 262 (370)
T COG1520 185 LSLSIYGSPAIASGTVYVGSDGY-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGK-L 262 (370)
T ss_pred cccccccCceeecceEEEecCCC-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCe-E
Confidence 00 0000112222333332111 4455556665543322111000000 0001111 122356777787 8
Q ss_pred EEEECCCCceEEEEEe
Q 014007 284 RIFNTLDGTLLQEVRR 299 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~ 299 (432)
...|..+++.+..+..
T Consensus 263 ~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 263 LCLDADTGELIWSFPA 278 (370)
T ss_pred EEEEcCCCceEEEEec
Confidence 8889999998888874
No 466
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=89.36 E-value=15 Score=36.93 Aligned_cols=111 Identities=9% Similarity=0.125 Sum_probs=56.7
Q ss_pred eEEEEEcCCCCEEEEEcC-Cc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007 88 LLHISFNQDHGCFAAGTD-HG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~~-~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~ 165 (432)
-.++-.+..|...++|-. +| +-+=|... ....+..++-....+..++.+.+...+.+-. |.|+-|-+..
T Consensus 187 fHSvfl~~kgqvY~cGhG~GGRlG~gdeq~--~~iPkrV~gL~gh~~~qisvs~~HslvLT~~-------g~Vys~GlN~ 257 (1267)
T KOG0783|consen 187 FHSVFLTEKGQVYVCGHGAGGRLGFGDEQY--NFIPKRVPGLIGHKVIQISVSHTHSLVLTKF-------GSVYSWGLNG 257 (1267)
T ss_pred ceeeEecCCCcEEEeccCCCCccCcCcccc--cccccccccccccceEEEEeecceeEEEeec-------ceEEEeecCc
Confidence 345555667776666653 33 32222111 1111222211344566777777777777654 8899998765
Q ss_pred CceeEEee-----------------cCCceEEEEEecCccEEEeCCeEEEEEcCCCeee
Q 014007 166 SRCIGELS-----------------FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLL 207 (432)
Q Consensus 166 ~~~~~~~~-----------------~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 207 (432)
...+.... ....|..++--....++..+..|+.|-++.|+.-
T Consensus 258 ~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~~VY~wGlN~GQlG 316 (1267)
T KOG0783|consen 258 SHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAWTDTDVYSWGLNNGQLG 316 (1267)
T ss_pred ccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeeeecceEEEecccCceec
Confidence 43332211 1112222222222233335888999998887653
No 467
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=89.18 E-value=11 Score=35.53 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=25.4
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999985
No 468
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.81 E-value=11 Score=39.67 Aligned_cols=175 Identities=11% Similarity=0.143 Sum_probs=94.3
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEE--------cCCCCEEEEEcCCCceEEEEECC
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFAL--------TQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~--------sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
.+-+-|.=+..++. .|+.+.+|++.+ +....+.+-...|..|.. -|.=++|+.-+.--. |.++-+.
T Consensus 83 ~mGiFpeI~RaWiT----iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~e-i~ilgV~ 157 (1311)
T KOG1900|consen 83 DMGIFPEIGRAWIT----IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVE-IVILGVS 157 (1311)
T ss_pred eeccchhhcceEEE----eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccce-EEEEEEE
Confidence 34455554555543 589999999988 566666666666666543 222233333333333 5554322
Q ss_pred ----CCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007 290 ----DGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (432)
Q Consensus 290 ----~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (432)
++.. ...+........|.++....+|+.+.+|- || .+|.+.-...-.-+.. .+..-..+.+.+...
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~----rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGS----RCRKICLTKSVLSSL 230 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhc----ccccccCchhHHHHh
Confidence 2211 11122223346789999888998887764 55 5565543221100000 000000000011112
Q ss_pred ccceeecceeeEEEE-ecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 363 LPKYFSSEWSVAQFR-LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 363 ~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+|. +..+. .+.++|..++....-+.|.+-+..|+|.+|++...
T Consensus 231 vPs-------~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 231 VPS-------LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred hhh-------hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 221 11222 45678999999888889999999999999999663
No 469
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.48 E-value=28 Score=34.56 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=82.9
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEee--------eCCeEEEecC-CCCCCCC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF--------RCNILALVGG-GPDPQYP 154 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~s~-~~d~~~~ 154 (432)
.+.|-.|.|.++++.+++...+| |.+|+.+.........+...+...+.--.| ..+..++++. ..+
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~---- 204 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNS---- 204 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCC----
Confidence 67899999999999888877666 999998332222111222122222221122 1234444444 211
Q ss_pred CCeEEEEeC-CCCceeEEee----cCCceEEEEEe-cCccEEE-eCCeEEEEEcCCCeeeEEEeec---cCC-cceEEEe
Q 014007 155 LNKVMIWDD-HQSRCIGELS----FRSEVRSVKLR-RDRIIVV-LEQKIFVYNFADLKLLHQIETI---ANP-KGLCAVS 223 (432)
Q Consensus 155 ~~~v~iwd~-~~~~~~~~~~----~~~~v~~~~~~-~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~---~~~-~~~~~~~ 223 (432)
.-..+++.+ .....+.++. +........|. .+|.+.. .+++|.+|++...+..+++... ... -..+.+.
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 035677776 1222222221 22222222222 2455444 6889999999888777766543 111 1234443
Q ss_pred c-CCCcEEEEeecCCCCcEEEEEccCC
Q 014007 224 Q-GVGSLVLVCPGLQKGQVRVEHYASK 249 (432)
Q Consensus 224 ~-~~~~~~~~~~g~~d~~i~i~d~~~~ 249 (432)
+ ..++++ .+ .+..|++.|+.-.
T Consensus 285 ~~s~nRvL-Ls---~~nkIyLld~~~~ 307 (670)
T PF10395_consen 285 PPSPNRVL-LS---VNNKIYLLDLKFE 307 (670)
T ss_pred cCCCCeEE-EE---cCCEEEEEeehhh
Confidence 3 334444 43 4689999998753
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.30 E-value=0.062 Score=49.28 Aligned_cols=112 Identities=15% Similarity=0.225 Sum_probs=73.1
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCCCceEEEE
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTLLQEV 297 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~~~~~~~~ 297 (432)
...|.+.+..+++++ .+..+..||-........ ...+....++|..+|..++. +-..+. +.+||+.+......-
T Consensus 39 ~~~w~~e~~nlavac---a~tiv~~YD~agq~~le~-n~tg~aldm~wDkegdvlavlAek~~p-iylwd~n~eytqqLE 113 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVAC---ANTIVIYYDKAGQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGP-IYLWDVNSEYTQQLE 113 (615)
T ss_pred eeeEecCCCceehhh---hhhHHHhhhhhcceeccc-CCchhHhhhhhccccchhhhhhhcCCC-eeechhhhhhHHHHh
Confidence 456777777766654 567777787554433222 23445567888888776554 455667 999998764322211
Q ss_pred EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.++.+.... +.|++.+..++.+...|.+.|++..+.+.
T Consensus 114 ~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ 151 (615)
T KOG2247|consen 114 SGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR 151 (615)
T ss_pred ccCcchHHH--HhhccCCccccccccccceEEEeccchhh
Confidence 122222222 78999999999999999999999887763
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.26 E-value=29 Score=34.46 Aligned_cols=238 Identities=16% Similarity=0.106 Sum_probs=118.4
Q ss_pred EEEEcCCCCEEEEEcCCc-EEEEEcC-CCeeEEEeecccCcceeEEEEeee---C-CeEEEecCCCCCCCCCCeEEEEeC
Q 014007 90 HISFNQDHGCFAAGTDHG-FRIYNCD-PFREIFRRDFERGGGIGVVEMLFR---C-NILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~-i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~---~-~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
+..++|+...+-.|=.+. |.-|-+. +.+..+...+. ....|.+|... . ...++++-... ++-++-.+
T Consensus 32 s~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~--pt~iV~~~dV~~~~~~~~~~~~glt~r-----Kk~~ll~i 104 (670)
T PF10395_consen 32 SDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPIS--PTTIVECCDVLEKSDGKKLYCVGLTER-----KKFKLLLI 104 (670)
T ss_pred ecccCCCCceEEEEeccchhhheecCCCcceeEeeccC--cCceEEEEEeEecCCCcEEEEEEEeeC-----CeeEEEEE
Confidence 336778877776665444 5555443 33444444443 44444444432 1 22344433333 33333332
Q ss_pred CCC-----------ce--eEEeecCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeE--EEeecc-CCcceEEEec
Q 014007 164 HQS-----------RC--IGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLH--QIETIA-NPKGLCAVSQ 224 (432)
Q Consensus 164 ~~~-----------~~--~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~--~~~~~~-~~~~~~~~~~ 224 (432)
..+ +. ...++....|.++.+..++..++ -+|.|.+||...+.... .+.... ..+..-.|..
T Consensus 105 ~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~ 184 (670)
T PF10395_consen 105 ERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVN 184 (670)
T ss_pred EccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhc
Confidence 222 22 22334688999999998776665 29999999994322211 111111 1010001111
Q ss_pred -----C-CCcEEEEee-cCCCCcEEEEEc--cCCceeeee---ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCC
Q 014007 225 -----G-VGSLVLVCP-GLQKGQVRVEHY--ASKRTKFIM---AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 225 -----~-~~~~~~~~~-g~~d~~i~i~d~--~~~~~~~~~---~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
+ .+.+++++. .+..-..+++.+ ....+..+. .+........|.- +|.+.-- .+++ |.+|++...
T Consensus 185 ~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~-i~~ysip~f 261 (670)
T PF10395_consen 185 DFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKT-ISSYSIPNF 261 (670)
T ss_pred ccccccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCE-EEEEEcCCc
Confidence 2 234444443 223455677777 333333332 2222223333332 5543333 5667 999999998
Q ss_pred ceEEEEEeCC--Cc--CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 292 TLLQEVRRGA--DR--AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 292 ~~~~~~~~~~--~~--~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
+..+++.... .. ..+.++.--...+.|++ .++.|++.|+.-...+.
T Consensus 262 ~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs--~~nkIyLld~~~~siLs 311 (670)
T PF10395_consen 262 QIQKTISLPSIIDKESDDLVSLKPPSPNRVLLS--VNNKIYLLDLKFESILS 311 (670)
T ss_pred eEEEEEEechhhccccccceEeecCCCCeEEEE--cCCEEEEEeehhhhhhh
Confidence 8888776431 11 12334432223344444 36789999997655443
No 472
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=88.24 E-value=15 Score=33.41 Aligned_cols=157 Identities=11% Similarity=0.068 Sum_probs=84.5
Q ss_pred CCceEEEEEecCc-cEEEeCCeEEEEEcCC-CeeeEEEeeccC-----CcceEEEecCC--------------CcEEEEe
Q 014007 175 RSEVRSVKLRRDR-IIVVLEQKIFVYNFAD-LKLLHQIETIAN-----PKGLCAVSQGV--------------GSLVLVC 233 (432)
Q Consensus 175 ~~~v~~~~~~~~~-~~~~~d~~i~i~d~~~-~~~~~~~~~~~~-----~~~~~~~~~~~--------------~~~~~~~ 233 (432)
.+....++|...+ .++++|...-+|.+.- ++....+..... -...+.++++| +.++.+.
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l 193 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAAL 193 (376)
T ss_pred cCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeee
Confidence 4677888998876 6777787766666542 111111111100 00122222211 1233334
Q ss_pred ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCce--EEEEEeCCCcCceEEEE
Q 014007 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTL--LQEVRRGADRAEIYSLA 310 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~ 310 (432)
.|..+|.+.-||..++..+.+...-.-.+.++.|||+.+++.+-.-- ..-+.| ++..+. ...|..+ -++..-.|.
T Consensus 194 ~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw-i~g~k~gt~EvFa~~-LPG~PDNIR 271 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW-IKGPKAGTSEVFAEG-LPGYPDNIR 271 (376)
T ss_pred cCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE-ecCCccCchhhHhhc-CCCCCccee
Confidence 45578889999988888777766666678899999999887764332 214566 332221 0111110 223445567
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecC
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.+++|.+.+.-....+. +|++-.
T Consensus 272 ~~~~G~fWVal~~~~~~-~~~~~~ 294 (376)
T KOG1520|consen 272 RDSTGHFWVALHSKRST-LWRLLM 294 (376)
T ss_pred ECCCCCEEEEEecccch-HHHhhh
Confidence 77888765543322222 555543
No 473
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.17 E-value=21 Score=32.83 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=102.4
Q ss_pred CCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec----CccE----EEe---C--CeEEEEEcCC--
Q 014007 139 CNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR----DRII----VVL---E--QKIFVYNFAD-- 203 (432)
Q Consensus 139 ~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~----~~~~----~~~---d--~~i~i~d~~~-- 203 (432)
|....+++.... +-+.+||+ .|+.++.+. .+.++.+.... ++.. +++ + ..|++|.+..
T Consensus 66 p~kSlIigTdK~-----~GL~VYdL-~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 66 PAKSLIIGTDKK-----GGLYVYDL-DGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GGG-EEEEEETT-----TEEEEEET-TS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred cccceEEEEeCC-----CCEEEEcC-CCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 445566666666 88999996 466666665 34445444322 2322 223 2 4689997753
Q ss_pred CeeeEEEee-------ccCCcceEEEe--cCCCcEEEEeecCCCCcEEEEEccC---C-----ceeeeeccCCceeEEEE
Q 014007 204 LKLLHQIET-------IANPKGLCAVS--QGVGSLVLVCPGLQKGQVRVEHYAS---K-----RTKFIMAHDSRIACFAL 266 (432)
Q Consensus 204 ~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~g~~d~~i~i~d~~~---~-----~~~~~~~~~~~i~~~~~ 266 (432)
+. +..+.. ....+..+|+- +....+++.. ...+|.+..|.+.. + .++.+. -...+..+..
T Consensus 139 g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v-~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCVV 215 (381)
T PF02333_consen 139 GE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFV-NGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCVV 215 (381)
T ss_dssp TE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEE-EETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEE
T ss_pred Cc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEE-ecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEEE
Confidence 33 333321 11223455553 3333333333 34789888887753 2 233443 3457888888
Q ss_pred cCCCCEEEEEcCCCceEEEEECCCC-----ceEEEEEeCCCcCceEEEEEC--CCC-CEEEEEe-CCCeEEEEEecCC
Q 014007 267 TQDGQLLATSSTKGTLVRIFNTLDG-----TLLQEVRRGADRAEIYSLAFS--SNA-QWLAVSS-DKGTVHVFNLKVN 335 (432)
Q Consensus 267 sp~~~~l~~~~~dg~~i~vwd~~~~-----~~~~~~~~~~~~~~i~~~~~s--~~~-~~l~~~~-~dg~i~iwd~~~~ 335 (432)
.....+|+.+-++.. |+-|+.+.. +.+....+......|-.|++- .++ .||++.+ .+++..||+.+..
T Consensus 216 DDe~g~LYvgEE~~G-IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 216 DDETGRLYVGEEDVG-IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp ETTTTEEEEEETTTE-EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred ecccCCEEEecCccE-EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 888889999999988 888887622 222222222233567777764 343 3555444 7889999998764
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.97 E-value=1.7 Score=24.80 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.8
Q ss_pred CCceEEEEccCCCEEEEEec-C--CeEEEE
Q 014007 381 GSPYIVAFGHQKNTVVILGM-D--GSFYRC 407 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~-d--g~v~iw 407 (432)
+.-...+|||||+.|+.++. + |...||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34567899999998886555 5 666666
No 475
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.50 E-value=11 Score=28.71 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=49.3
Q ss_pred eeCCeEEEecCCCCCCCCCCeEEEEeCCCC--------ceeEEeecCCceEEEEEec-------CccEEEeCCeEEEEEc
Q 014007 137 FRCNILALVGGGPDPQYPLNKVMIWDDHQS--------RCIGELSFRSEVRSVKLRR-------DRIIVVLEQKIFVYNF 201 (432)
Q Consensus 137 ~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--------~~~~~~~~~~~v~~~~~~~-------~~~~~~~d~~i~i~d~ 201 (432)
|......|+.+..- ++|.|++.... ..+..+.....|++|+-.+ |-.++.+...|..||+
T Consensus 6 fDG~~pcL~~aT~~-----gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 6 FDGVHPCLACATTG-----GKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred eCCCceeEEEEecC-----CEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 44444455555554 89999986633 3556667788888886443 2223336889999999
Q ss_pred CCCeeeEEEeeccCCcceEEE
Q 014007 202 ADLKLLHQIETIANPKGLCAV 222 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~ 222 (432)
....-+..- .-.+.++++.+
T Consensus 81 ~~N~d~Fyk-e~~DGvn~i~~ 100 (136)
T PF14781_consen 81 ENNSDLFYK-EVPDGVNAIVI 100 (136)
T ss_pred ccCchhhhh-hCccceeEEEE
Confidence 876554332 22345555555
No 476
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.41 E-value=7.5 Score=31.39 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=24.8
Q ss_pred CceeEEEEcCCC------CEEEEEcCCCceEEEEECC
Q 014007 259 SRIACFALTQDG------QLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 259 ~~i~~~~~sp~~------~~l~~~~~dg~~i~vwd~~ 289 (432)
..+.+++|||.| -+|++.+.++. |.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~-l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGR-LSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCe-EEEEecC
Confidence 478999999954 47889999999 9999754
No 477
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.26 E-value=6.5 Score=34.57 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=36.5
Q ss_pred EEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe------CCCeEEEEEecCCC
Q 014007 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS------DKGTVHVFNLKVNS 336 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~ 336 (432)
|++||..+.+-...-. . -.+.|++|.|..+.++++.|. ....+..||..+..
T Consensus 18 lC~yd~~~~qW~~~g~-~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGN-G-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEECCCCEeecCCC-C-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 9999976665433222 2 447899999987777777664 34568888888765
No 478
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.23 E-value=21 Score=31.69 Aligned_cols=136 Identities=11% Similarity=0.156 Sum_probs=80.4
Q ss_pred eEEEEEcCCCeeeEEEeeccC------CcceEEEecCCC----cEEEEeecCCCCcEEEEEccCCceeeeec--------
Q 014007 195 KIFVYNFADLKLLHQIETIAN------PKGLCAVSQGVG----SLVLVCPGLQKGQVRVEHYASKRTKFIMA-------- 256 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------- 256 (432)
+|.+||+.+++.++.+..... ....+.+..... ..+.++ ....+.|.|+|+.++....+..
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt-D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT-DSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE-ETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe-CCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 688999999998888755432 223455555322 333333 3345689999998855433321
Q ss_pred ------------cCCceeEEEEcC---CCCEEEEEcCCCceEEEEECCC-----C---------ceEEEEEeCCCcCceE
Q 014007 257 ------------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLD-----G---------TLLQEVRRGADRAEIY 307 (432)
Q Consensus 257 ------------~~~~i~~~~~sp---~~~~l~~~~~dg~~i~vwd~~~-----~---------~~~~~~~~~~~~~~i~ 307 (432)
....+..++.+| +|+.|.-+...+. ++|.+.+ . +.++.+-. ......
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~--k~~~s~ 189 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGD--KGSQSD 189 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----SEC
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccc--cCCCCc
Confidence 122366677765 6677777766654 5554432 1 11222221 113556
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
.++++++|.++++--..+.|..|+..+.
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 7889999998888889999999998863
No 479
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.86 E-value=41 Score=34.73 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCCee----EEEeecc-cC-------cceeEEEEeeeCCeEEEecCCC
Q 014007 84 PPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFRE----IFRRDFE-RG-------GGIGVVEMLFRCNILALVGGGP 149 (432)
Q Consensus 84 ~~~~v~~~~~s~~-~~~l~~~~~~~-i~iw~~~~~~~----~~~~~~~-~~-------~~~~v~~~~~~~~~~~~~s~~~ 149 (432)
...+...++|+|. .+.||+-+..| ..||++..... ....... .+ ....-..+.|.++...++.++.
T Consensus 144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 3456778999985 45788888666 99999921111 1111100 00 1122236677777666666655
Q ss_pred CCCCCCCeEEEEeCCCCceeE---EeecCCceEEEEEecC---ccEEEeCCeEEEEEcCC
Q 014007 150 DPQYPLNKVMIWDDHQSRCIG---ELSFRSEVRSVKLRRD---RIIVVLEQKIFVYNFAD 203 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~~~~~---~~~~~~~v~~~~~~~~---~~~~~~d~~i~i~d~~~ 203 (432)
..+.++|+++..... .......|.++.-++. ..++.+...|...++..
T Consensus 224 ------~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 224 ------SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ------CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 689999998875533 2225677888888876 33444688888888876
No 480
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=86.75 E-value=34 Score=33.70 Aligned_cols=240 Identities=13% Similarity=0.055 Sum_probs=124.6
Q ss_pred CeEEEEEcCCCCEEEEEcCC----c--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 87 TLLHISFNQDHGCFAAGTDH----G--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~----~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
.+-.++.|||.+++|.+-|. . +++-|+.++..... . -......++|.+++..+.-...++.-.+.+|..
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d-~----i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~ 204 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPD-E----ITNTSGSFAWAADGKTLFYTRLDENHRPDKVWR 204 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccch-h----hcccccceEEecCCCeEEEEEEcCCCCcceEEE
Confidence 45677889999999887522 1 88888887765421 1 222345667777665554443332223345555
Q ss_pred EeCCC--CceeEEeecCC--ceEEEEEecCccEEEe------CCeEEEEEcCCCeee-EEEeeccCCcceEEEecCCCcE
Q 014007 161 WDDHQ--SRCIGELSFRS--EVRSVKLRRDRIIVVL------EQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 161 wd~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
..+.+ ..-...++... -..++.-+.+..+++. .+.+++.+....... ..+..-...+ .......++.+
T Consensus 205 h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~-eY~~eh~~d~f 283 (682)
T COG1770 205 HRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGV-EYSVEHGGDRF 283 (682)
T ss_pred EecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCc-EEeeeecCcEE
Confidence 55554 22233333233 3334444455666652 346888887764332 1221111122 22333445555
Q ss_pred EEEeecCCCC-cEEEEEccC----CceeeeeccCCceeEEEEcCCCCEEEEEcCCCc--eEEEEECCCCceEEEEEeCCC
Q 014007 230 VLVCPGLQKG-QVRVEHYAS----KRTKFIMAHDSRIACFALTQDGQLLATSSTKGT--LVRIFNTLDGTLLQEVRRGAD 302 (432)
Q Consensus 230 ~~~~~g~~d~-~i~i~d~~~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~--~i~vwd~~~~~~~~~~~~~~~ 302 (432)
++.+ ..+| ..+|+.... ..-+.+..|...+.--.|+--..+|+....++. .|++++.++++... +... .
T Consensus 284 ~i~s--N~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~f~-~ 359 (682)
T COG1770 284 YILS--NADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IAFD-D 359 (682)
T ss_pred EEEe--cCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EEec-c
Confidence 5554 2334 555655443 223455677777766666666667766555432 17888887776543 3321 2
Q ss_pred cCceEEEEECCC--CCE--EEEEe--CCCeEEEEEecCCC
Q 014007 303 RAEIYSLAFSSN--AQW--LAVSS--DKGTVHVFNLKVNS 336 (432)
Q Consensus 303 ~~~i~~~~~s~~--~~~--l~~~~--~dg~i~iwd~~~~~ 336 (432)
......+..+++ ... +-..+ .-.++.=+|+.+++
T Consensus 360 ~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e 399 (682)
T COG1770 360 EAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE 399 (682)
T ss_pred hhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc
Confidence 233344444432 221 22222 34467777777766
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.51 E-value=6 Score=27.75 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=31.9
Q ss_pred cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
+..+|.+..||..+++...+...-...+.|++++|+.+|+.+-.
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 34568899999999888777665667889999999997766543
No 482
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=20 Score=34.08 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=51.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
.|..+..++.|..++-.+.+|.+.++=.+....-..+ ..+......+. +.-...+.+-. ..=.+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~---------eDgk~~v~CRt-----~~i~~~~ftss-~~ltl~ 169 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEF---------EDGKSTVNCRT-----TPVAERFFTSS-TSLTLK 169 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCcccee---------cCCCceEEEEe-----ecccceeeccC-Cceeee
Confidence 5778888999999999999996665542222111000 00000001100 00000011111 112467
Q ss_pred EEEEccCC---CEEEEEecCCeEEEEEecC
Q 014007 385 IVAFGHQK---NTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 385 ~~~~s~~~---~~l~~~~~dg~v~iw~~~~ 411 (432)
.++|+|+. ..|..-+.|..|++|++..
T Consensus 170 Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 170 QAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eccccCCccCCceEEEEecCcEEEEEecCC
Confidence 78999975 6788899999999999855
No 483
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=86.39 E-value=1 Score=44.99 Aligned_cols=103 Identities=8% Similarity=0.029 Sum_probs=52.0
Q ss_pred ccCCCCCCCeEEEEEcCC-CCEEEEEcC-CcEEEEEcCCCeeEE-----Eeecc--cCcceeEEEEeeeCCeEEEecCCC
Q 014007 79 STSSSPPPTLLHISFNQD-HGCFAAGTD-HGFRIYNCDPFREIF-----RRDFE--RGGGIGVVEMLFRCNILALVGGGP 149 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~-~~i~iw~~~~~~~~~-----~~~~~--~~~~~~v~~~~~~~~~~~~~s~~~ 149 (432)
....+-++.|-.+.|... ...+. .+ +.+.+|+++-.+... ..... +.....|..+-|-++..++..+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 344555677777777431 11121 22 237788875322111 11111 112233444445556666777777
Q ss_pred CCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccE
Q 014007 150 DPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII 189 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 189 (432)
+ +.|++.++.+... ..+. |...+..++|...|..
T Consensus 204 ~-----~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~ 238 (1283)
T KOG1916|consen 204 G-----GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVL 238 (1283)
T ss_pred C-----CceeEeeechHHH-HHHHhcCCCcccHHHHhhchh
Confidence 6 8888877655432 2222 7777776666555543
No 484
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.35 E-value=31 Score=32.79 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=37.7
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EEEEE---eCCCcCceEEEEECCCC
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQEVR---RGADRAEIYSLAFSSNA 315 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~~~~---~~~~~~~i~~~~~s~~~ 315 (432)
-.....|+|.|||++|++--..|. |++++..++.. +..+. ..........|+++|+-
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 445789999999987776555688 99998655432 11111 11124678999999874
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.99 E-value=57 Score=34.69 Aligned_cols=74 Identities=7% Similarity=-0.005 Sum_probs=45.0
Q ss_pred eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 255 MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 255 ~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.-+...+.+..+...... +.+...+. +-+|+.........+... ...++.++..++++-.||.+.+||...
T Consensus 195 ~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 195 SLIEYESLQVLYYSPTKI-LIGFNRGL-VVIKDRASKYVQSAYLPN-------GQLESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccccceeeeecCCCc-ceeeeeee-eeehhcccccchhhcccc-------cccCccCCceEEEEEecCCEEeeecCC
Confidence 344555666555444443 34444555 667765444333333321 111178899999999999999999998
Q ss_pred CCC
Q 014007 335 NSG 337 (432)
Q Consensus 335 ~~~ 337 (432)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 754
No 486
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.86 E-value=8.5 Score=37.86 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=29.8
Q ss_pred ceeEEEEcC----CCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 260 RIACFALTQ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 260 ~i~~~~~sp----~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
....++++. +..+|++.+.|+. +|+||+.+++++....
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATID 257 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEec
Confidence 455666666 6789999999999 9999999999977764
No 487
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.72 E-value=5.4 Score=39.24 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=27.1
Q ss_pred ceEEEEECC----CCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 305 EIYSLAFSS----NAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 305 ~i~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
....++++. +..+|++.+.|+++|+||+.+++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 456666666 67899999999999999999999743
No 488
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.61 E-value=61 Score=33.87 Aligned_cols=170 Identities=14% Similarity=0.175 Sum_probs=100.0
Q ss_pred eEEEEeCCCCceeEEeecCC-----ceEEEEEecCcc--EEE--------------eCCeEEEEEcC-CCeeeEEEeecc
Q 014007 157 KVMIWDDHQSRCIGELSFRS-----EVRSVKLRRDRI--IVV--------------LEQKIFVYNFA-DLKLLHQIETIA 214 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~--~~~--------------~d~~i~i~d~~-~~~~~~~~~~~~ 214 (432)
.|++.|..+++.+..+.+.. .+..+.|+.... +++ ++|.++.|++- .++.+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 58999988888777776332 355566665332 222 14557777754 344333332222
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee---eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-C
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-D 290 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~ 290 (432)
-+-...++.|..+.+ ++. ....+++||+..+++.. +..-...|..+++ .+..+++|..... +.++-.+ .
T Consensus 934 ~~~~v~Ai~~f~~~~-Lag---vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~ 1006 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRV-LAG---VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRE 1006 (1205)
T ss_pred CCccceEEeccCCEE-EEe---cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecC
Confidence 233356777877744 343 34899999998854422 2234567788877 5667888876655 5543332 3
Q ss_pred CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.+.+..+-....+..|+.+.+- |-..+|.+..=|.+.+-.+..
T Consensus 1007 ~n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1007 DNQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 4445555543344556766664 445677777777777666543
No 489
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.46 E-value=28 Score=29.88 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=48.9
Q ss_pred EEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcCC---CceEEEEECCC--CceE-EEEEe-CCCcCceEEEEEC
Q 014007 241 VRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTK---GTLVRIFNTLD--GTLL-QEVRR-GADRAEIYSLAFS 312 (432)
Q Consensus 241 i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~--~~~~-~~~~~-~~~~~~i~~~~~s 312 (432)
-.+||+.+...+.+.. ......+-.+-+||++|.+|+.. .. +++++..+ ..+- .+... -...-.--+...-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~-ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKA-IRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccc-eEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 3578988877765543 22333445677899999998763 24 88887543 1111 11110 0122344455556
Q ss_pred CCCCEEEEEeCC
Q 014007 313 SNAQWLAVSSDK 324 (432)
Q Consensus 313 ~~~~~l~~~~~d 324 (432)
+||+.|+.|+.+
T Consensus 127 ~DG~vlIvGG~~ 138 (243)
T PF07250_consen 127 PDGRVLIVGGSN 138 (243)
T ss_pred CCCCEEEEeCcC
Confidence 799999998876
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.60 E-value=6.1 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=19.9
Q ss_pred eccCCceeEEEEcCCCCEEEEEcCC---CceEEEE
Q 014007 255 MAHDSRIACFALTQDGQLLATSSTK---GTLVRIF 286 (432)
Q Consensus 255 ~~~~~~i~~~~~sp~~~~l~~~~~d---g~~i~vw 286 (432)
......-....|+|||+.|+-.+.. |. -.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~-~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGS-FDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SS-EEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCC-cCEE
Confidence 3445567789999999988766544 44 4554
No 491
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.48 E-value=64 Score=33.34 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=93.0
Q ss_pred cCCceEEEEEe---c----CccEEE--eCCeEEEEEcC------C---------CeeeEEEe---eccCCcceEEEecCC
Q 014007 174 FRSEVRSVKLR---R----DRIIVV--LEQKIFVYNFA------D---------LKLLHQIE---TIANPKGLCAVSQGV 226 (432)
Q Consensus 174 ~~~~v~~~~~~---~----~~~~~~--~d~~i~i~d~~------~---------~~~~~~~~---~~~~~~~~~~~~~~~ 226 (432)
...+|..|+|. . ...+++ ....+.|+... . ..++..+. ....+...++|+|..
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 45666667666 2 223555 36677777611 1 12333333 233456679999876
Q ss_pred CcEEEEeecCCCCcEEEEEccC------CceeeeeccC----------CceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007 227 GSLVLVCPGLQKGQVRVEHYAS------KRTKFIMAHD----------SRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~------~~~~~~~~~~----------~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~ 290 (432)
...+.+. ...|...||++.. ........+. ..-..+.|.++-+.|+.++... +.++|+.+
T Consensus 158 ~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~--l~~~d~~~ 233 (765)
T PF10214_consen 158 QRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSK--LMLIDFES 233 (765)
T ss_pred cceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCc--eEEEECCC
Confidence 5544333 4789999999932 1111111111 2234788988888888887664 89999988
Q ss_pred CceEEEEEeCCCcCceEEEEECCC--CCEEEEEeCCCeEEEEEecCCC
Q 014007 291 GTLLQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
......+........|..+.-+++ +..|+-. ...|...++....
T Consensus 234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~~ 279 (765)
T PF10214_consen 234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSSS 279 (765)
T ss_pred CCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCCC
Confidence 766432332224467999998887 3333333 2568888887743
No 492
>PLN02153 epithiospecifier protein
Probab=82.04 E-value=40 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=14.8
Q ss_pred CCCEEEEEcCC-----------CceEEEEECCCCc
Q 014007 269 DGQLLATSSTK-----------GTLVRIFNTLDGT 292 (432)
Q Consensus 269 ~~~~l~~~~~d-----------g~~i~vwd~~~~~ 292 (432)
++++++.|+.+ .. |.+||..+.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~-v~~yd~~~~~ 170 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRT-IEAYNIADGK 170 (341)
T ss_pred CCEEEEECCccCCCccCCCcccce-EEEEECCCCe
Confidence 56666776653 24 7788887654
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.84 E-value=26 Score=34.91 Aligned_cols=68 Identities=4% Similarity=0.019 Sum_probs=48.9
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYN 200 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d 200 (432)
....++++.-+|.+..++.+..| |.|++|++......+......+-..+.|...|.+.+ +|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d-----~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQD-----GSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecC-----CcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence 34456777788999999999999 999999987655433333445556677777777777 466666675
No 494
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=81.68 E-value=16 Score=25.71 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
+|.+..||..+++....+.+. ..-+.+++++|+..++++-
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence 678999999888765444443 3445799999999877654
No 495
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=81.30 E-value=3.6 Score=26.12 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
..+.++..+.+|.|+||.+|+.+++ +.+++
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~tNe-i~L~K 57 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDTNE-ITLKK 57 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTTTE-EEEEE
T ss_pred cCCEEEEEecCCeEEEEEeCCCCCe-EEEEE
Confidence 4567888899999999999998764 44444
No 496
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=81.18 E-value=55 Score=31.68 Aligned_cols=279 Identities=13% Similarity=0.064 Sum_probs=132.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
....|..+.+.-.|. |-+|+++|+..||..+++....... .....|..+.-+-++...+... .-|++.+.
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dGL~~fd~~~gkalql~s~--~~dk~I~al~~d~qg~LWVGTd-------qGv~~~e~ 232 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDGLSYFDAGRGKALQLASP--PLDKAINALIADVQGRLWVGTD-------QGVYLQEA 232 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCcceEEccccceEEEcCCC--cchhhHHHHHHHhcCcEEEEec-------cceEEEch
Confidence 456888999998885 5567788888888766554422221 1225566665565666655544 45777775
Q ss_pred CCCceeEEee--cCCceEEEEEecCccE-EEeCCeEEEEEcCCCeeeEEE-eecc--CCcceEEEecCCCcEEEEeecCC
Q 014007 164 HQSRCIGELS--FRSEVRSVKLRRDRII-VVLEQKIFVYNFADLKLLHQI-ETIA--NPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
+..+...... ..+.|..+.-..+|.+ +.+++-+-.+........... +.+. ..+..+....+|+ +.+ +..
T Consensus 233 ~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv---~t~ 308 (671)
T COG3292 233 EGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWV---GTY 308 (671)
T ss_pred hhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCCC-Eee---ecc
Confidence 4422111111 2344444444444443 334443444444433222111 1111 2233344444443 222 234
Q ss_pred CCcEEEEEccCCceeeeeccCCc-eeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007 238 KGQVRVEHYASKRTKFIMAHDSR-IACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 238 d~~i~i~d~~~~~~~~~~~~~~~-i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
++.+++-+-+-.....+...++. +...+..| .+..+.-....|. +.+-+-.+|..++..... ....|+.+++..+
T Consensus 309 ~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~-L~van~stG~~v~sv~q~-Rg~nit~~~~d~~ 386 (671)
T COG3292 309 GGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGE-LMVANGSTGELVRSVHQL-RGMNITTTLEDSR 386 (671)
T ss_pred CceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccccce-EEEecCCCCcEEEEeeec-cccccchhhhccC
Confidence 45555433222222222211111 11112222 1222222233333 455555566665554322 2345777777765
Q ss_pred CCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007 315 AQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN 393 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 393 (432)
|+. -.|+..+-+..|+-++ +...... -..+.+.|.++-=.|+++
T Consensus 387 g~l-Wlgs~q~GLsrl~n~n~~avlde~----------------------------------agl~ss~V~aived~dns 431 (671)
T COG3292 387 GRL-WLGSMQNGLSRLDNKNEWAVLDED----------------------------------AGLPSSEVSAIVEDPDNS 431 (671)
T ss_pred CcE-EEEecccchhhhccCCcccccccc----------------------------------cCCcccceeeeeecCCCC
Confidence 554 3444443355566555 1110000 011234577777778877
Q ss_pred EEEEEecCCeEEEEEecCCCCCcc
Q 014007 394 TVVILGMDGSFYRCQFDPVNGGEM 417 (432)
Q Consensus 394 ~l~~~~~dg~v~iw~~~~~~~~~~ 417 (432)
|..|+.+|.+++ +++.++-.
T Consensus 432 -LWIGTs~Glvk~---~pe~~~v~ 451 (671)
T COG3292 432 -LWIGTSGGLVKR---DPESGRVL 451 (671)
T ss_pred -EEEeccCCeEec---Cccccchh
Confidence 778999998884 66554433
No 497
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=80.87 E-value=8.5 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=25.6
Q ss_pred CceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 304 AEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
.....|.++|++++|..++ ..+.|++|....
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4568899999999988776 678999998764
No 498
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.20 E-value=37 Score=29.14 Aligned_cols=142 Identities=9% Similarity=0.018 Sum_probs=72.8
Q ss_pred EEEEEcCCCeeeEEEeeccC-CcceEEEecCCCcEEEEeecCCC--CcEEEEEccC-Cceeee------eccCCceeEEE
Q 014007 196 IFVYNFADLKLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYAS-KRTKFI------MAHDSRIACFA 265 (432)
Q Consensus 196 i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~-~~~~~~------~~~~~~i~~~~ 265 (432)
-.+||+.+++.. .+....+ ....-.+-+||+ ++.++|..+ ..+++++... ...... .....+--.+.
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~--ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGR--LLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCC--EEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 457888876542 2222221 112234567775 334455544 3477776543 111111 11222333445
Q ss_pred EcCCCCEEEEEcCCCceEEEEECCC-CceEEEE--Ee----CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 266 LTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEV--RR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 266 ~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~--~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.-|||+.|+.|+.+.....+|.-.. ......+ .. .....---.+...|||++|+.+..+ -.|||..+.+.+
T Consensus 125 ~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~ 202 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVV 202 (243)
T ss_pred ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEE
Confidence 5679999999988764255665422 1111111 10 0011223356677999999888765 456788877654
Q ss_pred CCCC
Q 014007 339 ARSE 342 (432)
Q Consensus 339 ~~~~ 342 (432)
+.++
T Consensus 203 ~~lP 206 (243)
T PF07250_consen 203 RTLP 206 (243)
T ss_pred eeCC
Confidence 4443
No 499
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=79.94 E-value=44 Score=29.80 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=55.5
Q ss_pred CcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC--------------------CceEEEE
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--------------------GTLVRIF 286 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------------g~~i~vw 286 (432)
..+++.- +..|.+..+|.+++....+..-.+....++|. |+++++|-.. .. |.+.
T Consensus 213 grLwvld--sgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CG-v~vi 287 (335)
T TIGR03032 213 GKLWLLN--SGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCG-VAVI 287 (335)
T ss_pred CeEEEEE--CCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhccc-EEEE
Confidence 3445443 35688888888776666655556677888887 7777665431 23 7778
Q ss_pred ECCCCceEEEEEeCCCcCceEEEEECCCC
Q 014007 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (432)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 315 (432)
|+++|..+..++....-..+.+++.-|.-
T Consensus 288 dl~tG~vv~~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 288 DLNSGDVVHWLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred ECCCCCEEEEEEeCCceeEEEEEEEecCC
Confidence 88888888777754333566777776653
No 500
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.85 E-value=27 Score=26.66 Aligned_cols=70 Identities=20% Similarity=0.204 Sum_probs=46.2
Q ss_pred EEEEcCCCCEEEEEcCCCceEEEEECCCC--------ceEEEEEeCCCcCceEEEEECC-----CCCEEEEEeCCCeEEE
Q 014007 263 CFALTQDGQLLATSSTKGTLVRIFNTLDG--------TLLQEVRRGADRAEIYSLAFSS-----NAQWLAVSSDKGTVHV 329 (432)
Q Consensus 263 ~~~~sp~~~~l~~~~~dg~~i~vwd~~~~--------~~~~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~dg~i~i 329 (432)
.-.|......|++++.-|. |.|++.... ..+..+. -...|++++-.+ +...|+.|+ ...|..
T Consensus 3 iGkfDG~~pcL~~aT~~gK-V~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt-~t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGK-VFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGT-QTSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCE-EEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEec-cceEEE
Confidence 3456555667888888888 999986533 3445555 335677775443 344666665 567999
Q ss_pred EEecCCCC
Q 014007 330 FNLKVNSG 337 (432)
Q Consensus 330 wd~~~~~~ 337 (432)
||+.....
T Consensus 78 YDV~~N~d 85 (136)
T PF14781_consen 78 YDVENNSD 85 (136)
T ss_pred EEcccCch
Confidence 99998763
Done!