Query 014007
Match_columns 432
No_of_seqs 714 out of 3674
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 03:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ow8_A WD repeat-containing pr 100.0 1.4E-45 4.6E-50 333.0 37.2 285 79-410 26-320 (321)
2 1vyh_C Platelet-activating fac 100.0 5.8E-45 2E-49 340.4 37.4 283 78-409 101-409 (410)
3 1got_B GT-beta; complex (GTP-b 100.0 3.5E-44 1.2E-48 326.8 40.1 285 77-408 47-340 (340)
4 2pbi_B Guanine nucleotide-bind 100.0 1.9E-43 6.4E-48 323.6 37.9 287 77-408 56-354 (354)
5 4gqb_B Methylosome protein 50; 100.0 4E-44 1.4E-48 325.8 32.9 282 82-412 27-332 (344)
6 4g56_B MGC81050 protein; prote 100.0 1.6E-43 5.4E-48 324.3 30.2 284 81-412 38-344 (357)
7 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.3E-42 2.5E-46 312.1 38.6 298 79-412 9-336 (345)
8 2ynn_A Coatomer subunit beta'; 100.0 6.3E-42 2.2E-46 306.9 37.2 284 78-410 6-301 (304)
9 3iz6_a 40S ribosomal protein R 100.0 1.6E-42 5.3E-47 320.8 30.2 293 77-411 58-375 (380)
10 3frx_A Guanine nucleotide-bind 100.0 2.6E-41 8.9E-46 305.0 36.8 293 79-411 11-317 (319)
11 1erj_A Transcriptional repress 100.0 7.3E-41 2.5E-45 311.0 39.4 280 83-411 62-389 (393)
12 4ery_A WD repeat-containing pr 100.0 7.9E-41 2.7E-45 301.1 37.8 286 78-410 16-311 (312)
13 2xzm_R RACK1; ribosome, transl 100.0 1E-40 3.5E-45 304.4 38.5 297 78-411 14-340 (343)
14 3vu4_A KMHSV2; beta-propeller 100.0 1.2E-39 4E-44 298.5 39.1 305 80-416 14-341 (355)
15 1nr0_A Actin interacting prote 100.0 4.2E-40 1.4E-44 323.2 38.6 325 77-411 51-479 (611)
16 1nr0_A Actin interacting prote 100.0 4.5E-40 1.5E-44 323.0 37.8 287 79-411 141-567 (611)
17 3zwl_B Eukaryotic translation 100.0 2.5E-39 8.5E-44 297.8 39.6 286 76-411 23-346 (369)
18 2hes_X YDR267CP; beta-propelle 100.0 5.1E-40 1.7E-44 298.0 33.3 287 79-411 8-328 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 1.3E-39 4.3E-44 318.3 38.3 276 79-408 297-577 (577)
20 4aow_A Guanine nucleotide-bind 100.0 3.1E-39 1.1E-43 294.1 37.3 295 79-411 32-337 (340)
21 1gxr_A ESG1, transducin-like e 100.0 7.8E-39 2.7E-43 290.8 38.2 280 81-409 47-335 (337)
22 2ynn_A Coatomer subunit beta'; 100.0 2.3E-38 7.8E-43 283.8 34.2 244 122-411 7-259 (304)
23 3ei3_B DNA damage-binding prot 100.0 4.8E-38 1.6E-42 291.3 35.6 283 79-410 67-381 (383)
24 2ymu_A WD-40 repeat protein; u 100.0 1.7E-37 5.8E-42 303.3 40.8 288 78-422 255-547 (577)
25 3i2n_A WD repeat-containing pr 100.0 1.2E-38 4.2E-43 292.0 29.9 306 79-411 12-353 (357)
26 3dm0_A Maltose-binding peripla 100.0 2.9E-38 1E-42 315.0 34.8 304 79-410 376-692 (694)
27 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-38 1.4E-42 290.3 32.2 313 81-411 4-361 (372)
28 3k26_A Polycomb protein EED; W 100.0 3.2E-38 1.1E-42 290.2 30.9 288 79-410 12-365 (366)
29 1sq9_A Antiviral protein SKI8; 100.0 7.4E-38 2.5E-42 291.3 33.3 286 78-411 9-395 (397)
30 1r5m_A SIR4-interacting protei 100.0 1.2E-37 4.1E-42 292.2 33.7 297 83-410 106-424 (425)
31 4h5i_A Guanine nucleotide-exch 100.0 2.4E-37 8.2E-42 284.1 33.7 279 85-412 14-344 (365)
32 3ow8_A WD repeat-containing pr 100.0 4.8E-37 1.7E-41 277.0 33.7 240 80-333 75-320 (321)
33 1vyh_C Platelet-activating fac 100.0 2.5E-37 8.6E-42 288.7 32.0 248 127-422 106-378 (410)
34 2pm9_A Protein WEB1, protein t 100.0 2.2E-38 7.5E-43 296.7 24.4 316 82-411 64-414 (416)
35 4gqb_B Methylosome protein 50; 100.0 2E-37 6.9E-42 281.7 29.6 242 83-336 80-333 (344)
36 1r5m_A SIR4-interacting protei 100.0 1.2E-36 4.1E-41 285.4 34.3 282 81-411 41-361 (425)
37 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-36 1.2E-40 270.6 35.8 277 78-412 11-297 (313)
38 4gga_A P55CDC, cell division c 100.0 3.4E-36 1.2E-40 282.2 37.2 274 87-411 107-395 (420)
39 4e54_B DNA damage-binding prot 100.0 8.1E-38 2.8E-42 294.6 25.9 285 81-411 115-430 (435)
40 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-37 4.9E-42 296.6 26.9 317 84-412 132-518 (524)
41 1gxr_A ESG1, transducin-like e 100.0 1.2E-36 4E-41 276.5 30.7 276 84-411 8-296 (337)
42 3dwl_C Actin-related protein 2 100.0 6.2E-38 2.1E-42 289.8 22.0 315 81-409 7-377 (377)
43 1got_B GT-beta; complex (GTP-b 100.0 1.5E-35 5.2E-40 269.7 36.0 251 122-422 49-310 (340)
44 3vl1_A 26S proteasome regulato 100.0 1.5E-36 5.1E-41 284.7 29.9 277 86-411 57-365 (420)
45 4aez_A CDC20, WD repeat-contai 100.0 1.1E-35 3.6E-40 277.2 35.3 275 87-411 95-380 (401)
46 3gre_A Serine/threonine-protei 100.0 1.2E-36 4E-41 287.0 29.1 316 79-408 57-437 (437)
47 4ggc_A P55CDC, cell division c 100.0 4.1E-35 1.4E-39 264.2 37.0 272 88-410 28-314 (318)
48 2pm9_A Protein WEB1, protein t 100.0 4.2E-37 1.4E-41 288.0 24.5 283 84-412 11-338 (416)
49 3vl1_A 26S proteasome regulato 100.0 1.8E-35 6E-40 277.4 35.2 285 86-410 98-418 (420)
50 4g56_B MGC81050 protein; prote 100.0 1.4E-36 4.8E-41 278.2 26.1 245 81-336 90-345 (357)
51 3dw8_B Serine/threonine-protei 100.0 1E-35 3.5E-40 281.3 30.3 311 83-408 26-443 (447)
52 4a11_B DNA excision repair pro 100.0 3.5E-35 1.2E-39 274.0 33.2 292 78-412 36-366 (408)
53 2pm7_B Protein transport prote 100.0 3E-35 1E-39 262.5 31.3 245 127-412 7-286 (297)
54 3fm0_A Protein CIAO1; WDR39,SG 100.0 1E-34 3.6E-39 264.7 34.3 260 121-412 8-284 (345)
55 3frx_A Guanine nucleotide-bind 100.0 1.6E-34 5.5E-39 260.5 34.4 243 120-411 9-267 (319)
56 3mmy_A MRNA export factor; mRN 100.0 4.1E-35 1.4E-39 269.6 30.9 285 76-410 30-345 (368)
57 2pm7_B Protein transport prote 100.0 5.2E-35 1.8E-39 261.0 30.5 247 80-334 4-285 (297)
58 3mkq_A Coatomer beta'-subunit; 100.0 9.6E-35 3.3E-39 295.2 36.1 285 78-411 6-302 (814)
59 4ery_A WD repeat-containing pr 100.0 2.6E-34 9.1E-39 258.5 33.7 252 122-421 17-276 (312)
60 1yfq_A Cell cycle arrest prote 100.0 3.7E-35 1.3E-39 267.4 28.0 278 80-408 6-321 (342)
61 3v7d_B Cell division control p 100.0 8.4E-34 2.9E-38 269.6 38.4 276 78-411 114-421 (464)
62 2pbi_B Guanine nucleotide-bind 100.0 5.7E-34 1.9E-38 260.7 35.2 250 122-420 58-322 (354)
63 3bg1_A Protein SEC13 homolog; 100.0 1.9E-35 6.4E-40 266.3 24.6 246 127-412 11-294 (316)
64 3bg1_A Protein SEC13 homolog; 100.0 4.5E-35 1.6E-39 263.8 26.4 246 79-334 7-293 (316)
65 3sfz_A APAF-1, apoptotic pepti 100.0 2.8E-34 9.7E-39 304.5 37.0 284 78-410 608-912 (1249)
66 1erj_A Transcriptional repress 100.0 5.7E-34 1.9E-38 264.6 34.3 239 84-336 122-391 (393)
67 1pgu_A Actin interacting prote 100.0 3.4E-34 1.2E-38 281.9 34.2 285 79-411 197-614 (615)
68 1p22_A F-BOX/WD-repeat protein 100.0 6.7E-34 2.3E-38 267.9 33.7 281 80-412 128-415 (435)
69 1pgu_A Actin interacting prote 100.0 4.5E-34 1.5E-38 281.0 31.7 280 82-411 15-328 (615)
70 2hes_X YDR267CP; beta-propelle 100.0 9.2E-34 3.2E-38 256.8 31.1 242 83-334 56-328 (330)
71 2oaj_A Protein SNI1; WD40 repe 100.0 9.4E-34 3.2E-38 288.2 34.8 239 80-332 12-310 (902)
72 2xzm_R RACK1; ribosome, transl 100.0 5.1E-33 1.7E-37 253.4 35.7 242 122-412 15-286 (343)
73 3iz6_a 40S ribosomal protein R 100.0 1.3E-34 4.5E-39 267.7 25.6 250 122-410 60-328 (380)
74 3f3f_A Nucleoporin SEH1; struc 100.0 1.5E-33 5E-38 256.9 30.2 288 78-412 4-338 (351)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.7E-32 5.7E-37 259.2 37.9 276 78-412 152-443 (445)
76 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-33 4.6E-38 287.1 32.2 300 80-424 146-675 (902)
77 4aez_A CDC20, WD repeat-contai 100.0 4.8E-33 1.6E-37 259.3 32.9 248 81-339 130-385 (401)
78 3sfz_A APAF-1, apoptotic pepti 100.0 4.6E-33 1.6E-37 295.2 36.1 286 79-411 651-1034(1249)
79 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-32 4.8E-37 260.0 35.6 287 86-415 5-395 (450)
80 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-32 1.3E-36 256.8 37.9 279 79-420 112-398 (445)
81 3jrp_A Fusion protein of prote 100.0 4.9E-33 1.7E-37 256.8 30.1 248 79-336 5-289 (379)
82 2aq5_A Coronin-1A; WD40 repeat 100.0 6.3E-33 2.2E-37 258.6 29.0 279 87-412 36-343 (402)
83 3v7d_B Cell division control p 100.0 4.5E-32 1.5E-36 257.7 35.0 277 79-411 156-463 (464)
84 2xyi_A Probable histone-bindin 100.0 2E-32 7E-37 257.2 31.6 254 127-411 126-410 (430)
85 3jrp_A Fusion protein of prote 100.0 1.3E-32 4.4E-37 254.0 29.2 244 127-411 9-287 (379)
86 4gga_A P55CDC, cell division c 100.0 8E-32 2.7E-36 252.5 35.0 245 81-338 143-399 (420)
87 3bws_A Protein LP49; two-domai 100.0 1.9E-31 6.6E-36 251.0 36.5 279 85-410 122-431 (433)
88 2j04_A TAU60, YPL007P, hypothe 100.0 4.7E-33 1.6E-37 259.4 24.0 258 82-410 12-296 (588)
89 4h5i_A Guanine nucleotide-exch 100.0 8.7E-33 3E-37 253.7 25.5 245 80-336 68-345 (365)
90 3dwl_C Actin-related protein 2 100.0 2.1E-33 7.1E-38 259.5 20.1 239 128-410 10-280 (377)
91 3zwl_B Eukaryotic translation 100.0 6.3E-31 2.1E-35 241.7 36.5 241 122-411 26-304 (369)
92 1k8k_C P40, ARP2/3 complex 41 100.0 1E-31 3.5E-36 247.4 30.4 238 127-411 6-274 (372)
93 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-31 5.4E-36 271.5 34.3 243 79-336 49-304 (814)
94 3ei3_B DNA damage-binding prot 100.0 1.2E-31 4.1E-36 248.2 29.9 264 122-421 67-347 (383)
95 3k26_A Polycomb protein EED; W 100.0 3E-32 1E-36 250.3 25.0 238 83-334 67-366 (366)
96 1sq9_A Antiviral protein SKI8; 100.0 9.4E-32 3.2E-36 250.1 28.1 247 79-336 56-397 (397)
97 3gre_A Serine/threonine-protei 100.0 2.2E-32 7.7E-37 257.7 23.8 295 92-421 34-367 (437)
98 4aow_A Guanine nucleotide-bind 100.0 1.5E-30 5.1E-35 236.6 34.2 255 108-411 18-286 (340)
99 3i2n_A WD repeat-containing pr 100.0 5.8E-31 2E-35 240.9 31.1 244 127-412 16-292 (357)
100 3dm0_A Maltose-binding peripla 100.0 6.5E-31 2.2E-35 262.0 33.7 241 122-411 376-632 (694)
101 1l0q_A Surface layer protein; 100.0 1.5E-29 5.1E-34 234.8 38.6 262 98-411 3-275 (391)
102 4ggc_A P55CDC, cell division c 100.0 5.6E-30 1.9E-34 230.6 34.4 243 81-336 63-317 (318)
103 3dw8_B Serine/threonine-protei 100.0 4.6E-31 1.6E-35 249.4 26.5 236 128-411 27-373 (447)
104 2j04_B YDR362CP, TAU91; beta p 100.0 7.9E-32 2.7E-36 257.0 21.3 229 138-411 170-428 (524)
105 2w18_A PALB2, fancn, partner a 100.0 5.8E-30 2E-34 224.4 31.0 274 87-409 41-355 (356)
106 1yfq_A Cell cycle arrest prote 100.0 1.6E-30 5.6E-35 236.6 28.2 242 126-411 8-282 (342)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 1.1E-30 3.8E-35 243.4 26.8 249 79-336 75-344 (402)
108 3jro_A Fusion protein of prote 100.0 3.8E-31 1.3E-35 265.3 24.8 244 127-411 7-285 (753)
109 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-29 3.8E-34 228.0 31.1 236 122-411 12-255 (313)
110 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-30 6.6E-35 236.4 26.3 261 92-409 43-331 (343)
111 3jro_A Fusion protein of prote 100.0 6E-31 2.1E-35 263.9 24.4 248 79-336 3-287 (753)
112 2xyi_A Probable histone-bindin 100.0 2.5E-30 8.5E-35 243.0 26.8 247 79-336 122-412 (430)
113 4gq1_A NUP37; propeller, trans 100.0 4E-30 1.4E-34 238.6 24.0 265 81-409 85-387 (393)
114 1l0q_A Surface layer protein; 100.0 6.2E-28 2.1E-32 223.9 37.7 238 86-339 32-280 (391)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.4E-29 2.5E-33 234.5 31.8 258 130-409 5-337 (450)
116 4e54_B DNA damage-binding prot 100.0 2.3E-30 7.7E-35 243.8 20.7 204 127-339 117-332 (435)
117 3vu4_A KMHSV2; beta-propeller 100.0 6.8E-29 2.3E-33 227.0 28.3 244 110-413 3-273 (355)
118 4a11_B DNA excision repair pro 100.0 1.1E-28 3.7E-33 230.0 29.7 242 82-338 96-369 (408)
119 2j04_A TAU60, YPL007P, hypothe 100.0 8.1E-31 2.8E-35 244.4 13.1 276 81-400 48-350 (588)
120 3bws_A Protein LP49; two-domai 100.0 1.6E-27 5.5E-32 224.2 35.2 279 84-411 59-390 (433)
121 3lrv_A PRE-mRNA-splicing facto 100.0 6.5E-29 2.2E-33 226.3 24.0 232 135-412 42-293 (343)
122 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-28 1.3E-32 228.6 30.0 227 127-411 131-365 (435)
123 2hqs_A Protein TOLB; TOLB, PAL 100.0 8.2E-28 2.8E-32 224.3 28.1 280 86-410 63-386 (415)
124 3mmy_A MRNA export factor; mRN 100.0 3.7E-27 1.3E-31 216.3 30.4 245 122-411 33-304 (368)
125 2w18_A PALB2, fancn, partner a 100.0 4E-27 1.4E-31 206.5 25.9 240 78-333 79-356 (356)
126 1nir_A Nitrite reductase; hemo 100.0 7.8E-26 2.7E-30 217.4 32.6 281 92-413 144-460 (543)
127 1nir_A Nitrite reductase; hemo 100.0 1.2E-25 4.1E-30 216.1 32.6 297 88-428 181-529 (543)
128 2ecf_A Dipeptidyl peptidase IV 99.9 2E-25 6.9E-30 224.3 29.1 284 84-412 35-414 (741)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 9.3E-26 3.2E-30 210.5 23.2 237 106-392 159-409 (415)
130 3vgz_A Uncharacterized protein 99.9 1.7E-23 5.7E-28 191.1 35.5 266 84-402 39-335 (353)
131 3u4y_A Uncharacterized protein 99.9 1.9E-23 6.4E-28 189.1 35.0 272 91-411 3-304 (331)
132 3f3f_A Nucleoporin SEH1; struc 99.9 1E-24 3.5E-29 198.3 26.4 202 127-337 9-252 (351)
133 1ri6_A Putative isomerase YBHE 99.9 3.4E-23 1.2E-27 188.1 34.2 273 100-415 8-312 (343)
134 1pby_B Quinohemoprotein amine 99.9 7.4E-24 2.5E-28 192.0 29.3 269 98-422 2-319 (337)
135 1xfd_A DIP, dipeptidyl aminope 99.9 5.1E-25 1.8E-29 220.7 20.9 287 87-414 18-396 (723)
136 3hfq_A Uncharacterized protein 99.9 1.9E-22 6.5E-27 183.8 34.2 270 105-417 15-323 (347)
137 2z3z_A Dipeptidyl aminopeptida 99.9 7.2E-24 2.5E-28 211.8 25.5 282 87-414 27-392 (706)
138 4gq1_A NUP37; propeller, trans 99.9 3.2E-24 1.1E-28 198.9 21.0 225 79-334 130-389 (393)
139 2ojh_A Uncharacterized protein 99.9 8.1E-24 2.8E-28 187.8 22.4 248 105-402 21-293 (297)
140 3o4h_A Acylamino-acid-releasin 99.9 2.2E-23 7.7E-28 203.5 26.6 270 85-412 21-314 (582)
141 2z3z_A Dipeptidyl aminopeptida 99.9 3.3E-23 1.1E-27 207.0 26.4 276 85-411 81-435 (706)
142 3pe7_A Oligogalacturonate lyas 99.9 4E-23 1.4E-27 191.2 24.5 290 78-413 23-384 (388)
143 1k32_A Tricorn protease; prote 99.9 1.4E-22 4.9E-27 210.5 29.8 282 78-411 92-461 (1045)
144 1k32_A Tricorn protease; prote 99.9 5.6E-23 1.9E-27 213.6 24.5 274 81-409 199-500 (1045)
145 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-22 3.7E-27 204.5 24.9 273 86-409 109-457 (741)
146 1ri6_A Putative isomerase YBHE 99.9 1.1E-21 3.7E-26 178.1 29.3 238 84-334 36-308 (343)
147 3u4y_A Uncharacterized protein 99.9 1.2E-21 4E-26 177.2 27.9 242 84-336 39-306 (331)
148 3vgz_A Uncharacterized protein 99.9 3.9E-21 1.3E-25 175.3 30.5 243 129-410 40-302 (353)
149 3scy_A Hypothetical bacterial 99.9 1E-20 3.5E-25 173.3 32.8 281 95-416 11-342 (361)
150 1jmx_B Amine dehydrogenase; ox 99.9 3.4E-21 1.2E-25 175.4 29.0 239 134-421 4-333 (349)
151 2ojh_A Uncharacterized protein 99.9 2.1E-21 7.1E-26 172.2 26.9 216 156-411 22-258 (297)
152 1pby_B Quinohemoprotein amine 99.9 8.9E-22 3E-26 178.3 24.4 236 87-337 35-313 (337)
153 1xfd_A DIP, dipeptidyl aminope 99.9 4.8E-22 1.7E-26 199.2 22.9 290 87-421 62-451 (723)
154 1z68_A Fibroblast activation p 99.9 8.9E-23 3E-27 204.3 15.2 278 90-414 20-394 (719)
155 3hfq_A Uncharacterized protein 99.9 1.5E-20 5.3E-25 171.1 27.3 240 84-334 38-317 (347)
156 3c5m_A Oligogalacturonate lyas 99.9 4.3E-21 1.5E-25 177.9 22.2 279 87-417 37-388 (396)
157 1jof_A Carboxy-CIS,CIS-muconat 99.9 1.1E-19 3.8E-24 166.6 29.7 265 106-412 14-342 (365)
158 3scy_A Hypothetical bacterial 99.9 2.1E-19 7.2E-24 164.6 30.7 238 84-334 48-337 (361)
159 3o4h_A Acylamino-acid-releasin 99.9 1.8E-21 6E-26 190.0 17.2 230 128-409 20-274 (582)
160 1jmx_B Amine dehydrogenase; ox 99.9 5.2E-20 1.8E-24 167.5 25.9 228 90-337 4-328 (349)
161 1jof_A Carboxy-CIS,CIS-muconat 99.9 2.1E-19 7.3E-24 164.7 26.4 241 85-335 39-342 (365)
162 4a5s_A Dipeptidyl peptidase 4 99.9 3.5E-20 1.2E-24 185.8 22.1 245 87-336 18-355 (740)
163 2oit_A Nucleoporin 214KDA; NH2 99.8 4.7E-20 1.6E-24 172.5 19.0 218 156-412 23-279 (434)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 2.5E-18 8.5E-23 160.8 30.5 238 85-333 36-332 (434)
165 2gop_A Trilobed protease; beta 99.8 2.1E-17 7.2E-22 150.3 29.6 262 85-410 14-330 (347)
166 3azo_A Aminopeptidase; POP fam 99.8 2.5E-18 8.7E-23 170.4 24.9 289 78-415 16-371 (662)
167 1z68_A Fibroblast activation p 99.8 7.4E-19 2.5E-23 175.9 21.0 237 134-415 20-348 (719)
168 1q7f_A NHL, brain tumor CG1071 99.8 1.3E-16 4.3E-21 141.0 32.3 241 82-336 26-282 (286)
169 1q7f_A NHL, brain tumor CG1071 99.8 1.5E-16 5.1E-21 140.5 30.9 235 128-411 28-280 (286)
170 4a5s_A Dipeptidyl peptidase 4 99.8 8.2E-18 2.8E-22 168.6 25.0 238 131-412 18-352 (740)
171 3fvz_A Peptidyl-glycine alpha- 99.8 8.2E-17 2.8E-21 145.2 26.0 245 129-411 23-322 (329)
172 3fvz_A Peptidyl-glycine alpha- 99.8 3.4E-16 1.2E-20 141.2 29.7 241 85-336 23-324 (329)
173 3dsm_A Uncharacterized protein 99.8 1.4E-15 4.9E-20 136.9 33.2 265 105-420 16-308 (328)
174 3pe7_A Oligogalacturonate lyas 99.8 3.5E-17 1.2E-21 151.2 22.8 244 79-335 74-383 (388)
175 2oiz_A Aromatic amine dehydrog 99.8 4.6E-17 1.6E-21 148.5 23.3 230 90-335 54-335 (361)
176 2dg1_A DRP35, lactonase; beta 99.8 3.1E-16 1E-20 141.7 28.3 268 86-402 6-301 (333)
177 2oiz_A Aromatic amine dehydrog 99.8 1.1E-16 3.7E-21 146.1 24.8 269 96-420 14-343 (361)
178 3azo_A Aminopeptidase; POP fam 99.8 3.6E-17 1.2E-21 162.1 22.7 252 127-414 21-326 (662)
179 1qks_A Cytochrome CD1 nitrite 99.8 2.3E-15 7.9E-20 144.3 33.7 318 95-427 165-552 (567)
180 3e5z_A Putative gluconolactona 99.7 3.4E-15 1.2E-19 132.5 29.7 233 128-414 26-287 (296)
181 3c5m_A Oligogalacturonate lyas 99.7 1.3E-16 4.4E-21 147.7 18.2 201 132-336 38-275 (396)
182 2xdw_A Prolyl endopeptidase; a 99.7 3.1E-15 1.1E-19 149.2 28.3 280 95-411 81-414 (710)
183 2bkl_A Prolyl endopeptidase; m 99.7 1.4E-15 4.9E-20 151.3 25.3 275 94-411 76-397 (695)
184 3no2_A Uncharacterized protein 99.7 1.3E-14 4.6E-19 126.8 28.0 185 140-337 4-198 (276)
185 2z2n_A Virginiamycin B lyase; 99.7 4.4E-13 1.5E-17 118.7 38.4 269 84-409 13-293 (299)
186 2xdw_A Prolyl endopeptidase; a 99.7 3.5E-15 1.2E-19 148.9 27.2 248 82-336 121-416 (710)
187 3e5z_A Putative gluconolactona 99.7 6.4E-14 2.2E-18 124.3 28.1 234 80-336 22-288 (296)
188 2gop_A Trilobed protease; beta 99.7 1.6E-14 5.6E-19 131.1 24.6 226 86-333 59-330 (347)
189 2bkl_A Prolyl endopeptidase; m 99.7 3.6E-15 1.2E-19 148.3 19.8 246 82-336 117-399 (695)
190 3dsm_A Uncharacterized protein 99.7 8E-14 2.7E-18 125.4 26.4 234 86-336 44-303 (328)
191 1rwi_B Serine/threonine-protei 99.7 8.1E-14 2.8E-18 121.7 25.5 235 87-337 25-267 (270)
192 2qc5_A Streptogramin B lactona 99.6 7.5E-12 2.6E-16 110.8 37.6 231 84-332 18-258 (300)
193 1rwi_B Serine/threonine-protei 99.6 9.5E-14 3.3E-18 121.2 23.4 235 131-412 25-265 (270)
194 2mad_H Methylamine dehydrogena 99.6 3.7E-12 1.2E-16 116.3 34.6 270 93-419 28-356 (373)
195 2dg1_A DRP35, lactonase; beta 99.6 1.7E-12 5.8E-17 117.1 32.0 234 82-324 41-300 (333)
196 1yr2_A Prolyl oligopeptidase; 99.6 1.8E-13 6.2E-18 137.1 24.7 278 94-411 115-441 (741)
197 3g4e_A Regucalcin; six bladed 99.6 5.2E-12 1.8E-16 111.9 31.1 227 131-400 14-261 (297)
198 3sjl_D Methylamine dehydrogena 99.6 6.6E-13 2.2E-17 119.7 25.1 274 92-421 39-371 (386)
199 1qks_A Cytochrome CD1 nitrite 99.6 7E-12 2.4E-16 120.2 33.3 189 138-336 164-375 (567)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 4.8E-12 1.6E-16 113.0 30.1 237 85-335 17-300 (314)
201 3c75_H MADH, methylamine dehyd 99.6 5.8E-13 2E-17 122.2 24.3 271 95-420 82-409 (426)
202 3no2_A Uncharacterized protein 99.6 3.6E-12 1.2E-16 111.3 28.2 211 96-322 4-231 (276)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 2.8E-12 9.5E-17 114.5 28.0 238 130-411 18-299 (314)
204 2mad_H Methylamine dehydrogena 99.6 4E-12 1.4E-16 116.0 29.3 232 90-338 70-354 (373)
205 1yr2_A Prolyl oligopeptidase; 99.6 2E-13 6.9E-18 136.7 22.6 246 82-336 159-443 (741)
206 3hrp_A Uncharacterized protein 99.6 7.9E-12 2.7E-16 115.7 30.3 234 85-333 130-409 (409)
207 3hrp_A Uncharacterized protein 99.6 9.1E-12 3.1E-16 115.2 30.2 247 130-409 131-408 (409)
208 3sjl_D Methylamine dehydrogena 99.5 5.9E-12 2E-16 113.5 26.3 232 90-337 82-366 (386)
209 3g4e_A Regucalcin; six bladed 99.5 1.1E-11 3.6E-16 109.9 27.5 222 84-323 11-261 (297)
210 3iuj_A Prolyl endopeptidase; h 99.5 1.7E-12 5.9E-17 128.8 23.4 245 81-336 124-407 (693)
211 2ghs_A AGR_C_1268P; regucalcin 99.5 5.2E-11 1.8E-15 106.9 30.1 223 133-401 52-292 (326)
212 2z2n_A Virginiamycin B lyase; 99.5 2.1E-10 7.3E-15 101.3 33.7 232 128-409 13-253 (299)
213 3c75_H MADH, methylamine dehyd 99.4 1.1E-11 3.8E-16 113.7 21.4 234 90-338 122-406 (426)
214 2ghs_A AGR_C_1268P; regucalcin 99.4 2.5E-10 8.6E-15 102.4 29.5 216 87-323 50-291 (326)
215 3dr2_A Exported gluconolactona 99.4 7.6E-11 2.6E-15 104.8 25.5 228 83-331 42-303 (305)
216 2ece_A 462AA long hypothetical 99.4 1.1E-09 3.8E-14 99.4 32.2 188 141-335 96-353 (462)
217 3dr2_A Exported gluconolactona 99.4 2.6E-10 8.8E-15 101.4 27.8 223 130-403 45-299 (305)
218 3iuj_A Prolyl endopeptidase; h 99.4 1.8E-11 6E-16 121.6 22.2 235 127-409 126-403 (693)
219 2qc5_A Streptogramin B lactona 99.4 1.4E-09 4.9E-14 96.0 31.6 229 128-409 18-258 (300)
220 1xip_A Nucleoporin NUP159; bet 99.4 6E-12 2E-16 113.9 16.1 169 87-275 39-230 (388)
221 2qe8_A Uncharacterized protein 99.4 2.9E-10 1E-14 102.8 25.0 232 130-404 17-314 (343)
222 1kb0_A Quinohemoprotein alcoho 99.4 1.7E-09 5.7E-14 106.6 31.5 312 96-421 77-515 (677)
223 1xip_A Nucleoporin NUP159; bet 99.4 2.1E-11 7.1E-16 110.4 16.4 172 131-322 39-232 (388)
224 2ece_A 462AA long hypothetical 99.3 1.9E-09 6.5E-14 97.9 27.9 229 93-322 89-399 (462)
225 1yiq_A Quinohemoprotein alcoho 99.3 3E-09 1E-13 105.0 31.7 307 97-421 70-513 (689)
226 2qe8_A Uncharacterized protein 99.3 5E-10 1.7E-14 101.2 24.1 233 86-330 17-317 (343)
227 1mda_H Methylamine dehydrogena 99.3 3.9E-11 1.3E-15 108.3 16.2 252 107-421 47-354 (368)
228 2iwa_A Glutamine cyclotransfer 99.3 3.2E-09 1.1E-13 90.6 25.0 218 166-412 9-238 (266)
229 3q7m_A Lipoprotein YFGL, BAMB; 99.3 1.6E-08 5.4E-13 92.6 31.1 221 97-336 53-298 (376)
230 1mda_H Methylamine dehydrogena 99.3 3.9E-11 1.3E-15 108.3 12.7 227 90-339 69-351 (368)
231 1fwx_A Nitrous oxide reductase 99.3 3.5E-10 1.2E-14 106.3 19.0 236 95-336 99-433 (595)
232 1npe_A Nidogen, entactin; glyc 99.3 3.6E-08 1.2E-12 85.5 30.7 228 97-336 1-240 (267)
233 2iwa_A Glutamine cyclotransfer 99.2 2.2E-08 7.5E-13 85.5 28.1 195 130-336 21-239 (266)
234 1kb0_A Quinohemoprotein alcoho 99.2 1.4E-08 4.9E-13 99.9 28.7 231 97-337 128-510 (677)
235 1fwx_A Nitrous oxide reductase 99.2 5.5E-09 1.9E-13 98.2 24.3 185 140-334 100-361 (595)
236 3hxj_A Pyrrolo-quinoline quino 99.2 1.8E-09 6.1E-14 96.9 20.6 215 91-332 25-242 (330)
237 3q7m_A Lipoprotein YFGL, BAMB; 99.2 3.7E-08 1.3E-12 90.1 29.6 217 97-336 103-339 (376)
238 1yiq_A Quinohemoprotein alcoho 99.2 2E-08 7E-13 99.1 27.8 236 97-337 121-508 (689)
239 3hxj_A Pyrrolo-quinoline quino 99.2 6.7E-09 2.3E-13 93.1 21.8 262 86-411 60-324 (330)
240 3nol_A Glutamine cyclotransfer 99.1 2.1E-08 7.3E-13 84.5 21.4 202 167-400 32-244 (262)
241 2hz6_A Endoplasmic reticulum t 99.1 3E-11 1E-15 110.3 4.0 179 143-340 11-198 (369)
242 4a2l_A BT_4663, two-component 99.1 5.4E-07 1.8E-11 91.0 35.1 235 88-336 175-438 (795)
243 3nol_A Glutamine cyclotransfer 99.1 6.2E-08 2.1E-12 81.6 22.8 189 122-322 35-243 (262)
244 3nok_A Glutaminyl cyclase; bet 99.1 4.8E-08 1.6E-12 82.3 21.7 163 167-338 44-214 (268)
245 1kv9_A Type II quinohemoprotei 99.1 3E-07 1E-11 90.5 30.2 192 96-298 66-341 (668)
246 1npe_A Nidogen, entactin; glyc 99.1 4E-07 1.4E-11 78.9 27.9 217 86-316 36-263 (267)
247 2ad6_A Methanol dehydrogenase 99.0 4.4E-07 1.5E-11 87.4 30.2 193 96-299 62-344 (571)
248 2fp8_A Strictosidine synthase; 99.0 2.8E-07 9.6E-12 82.3 26.4 236 87-336 20-315 (322)
249 3nok_A Glutaminyl cyclase; bet 99.0 3.9E-07 1.3E-11 76.8 24.6 179 129-322 54-253 (268)
250 3mbr_X Glutamine cyclotransfer 99.0 1.2E-06 4E-11 73.3 26.9 189 122-322 13-222 (243)
251 4a2l_A BT_4663, two-component 99.0 3.9E-06 1.3E-10 84.7 35.3 236 85-336 262-528 (795)
252 3mbr_X Glutamine cyclotransfer 98.9 1.4E-06 4.6E-11 72.9 25.1 164 167-338 10-183 (243)
253 2fp8_A Strictosidine synthase; 98.9 1.8E-06 6E-11 77.1 27.7 231 132-411 21-313 (322)
254 1flg_A Protein (quinoprotein e 98.9 5.4E-06 1.9E-10 79.9 32.4 195 96-299 68-364 (582)
255 1w6s_A Methanol dehydrogenase 98.9 3.4E-06 1.2E-10 81.3 30.3 195 96-299 62-351 (599)
256 2hz6_A Endoplasmic reticulum t 98.9 2.2E-09 7.7E-14 97.8 6.4 218 96-336 8-238 (369)
257 2p4o_A Hypothetical protein; p 98.9 4.9E-06 1.7E-10 73.5 27.9 227 86-325 32-279 (306)
258 1kv9_A Type II quinohemoprotei 98.9 2.1E-06 7.2E-11 84.5 27.6 236 97-337 117-491 (668)
259 1ijq_A LDL receptor, low-densi 98.8 4.8E-05 1.6E-09 67.4 33.3 174 156-334 10-195 (316)
260 2ad6_A Methanol dehydrogenase 98.8 1.3E-06 4.6E-11 84.1 24.7 230 97-337 115-497 (571)
261 1ijq_A LDL receptor, low-densi 98.8 3.6E-05 1.2E-09 68.2 32.0 227 99-338 3-242 (316)
262 3v64_C Agrin; beta propeller, 98.8 5.1E-05 1.7E-09 68.3 33.3 239 85-338 33-279 (349)
263 2p4o_A Hypothetical protein; p 98.8 1.5E-05 5.1E-10 70.4 29.1 189 130-333 32-241 (306)
264 3v65_B Low-density lipoprotein 98.8 2.7E-05 9.4E-10 71.1 31.2 237 87-338 78-322 (386)
265 3v9f_A Two-component system se 98.8 1.8E-05 6.2E-10 79.7 32.6 235 85-336 210-480 (781)
266 3v65_B Low-density lipoprotein 98.8 3.4E-05 1.2E-09 70.5 31.6 174 156-334 96-277 (386)
267 3v64_C Agrin; beta propeller, 98.8 5.8E-05 2E-09 67.9 31.7 174 156-334 53-234 (349)
268 3p5b_L Low density lipoprotein 98.8 5.9E-05 2E-09 69.2 32.1 229 98-338 84-324 (400)
269 1w6s_A Methanol dehydrogenase 98.7 2.3E-05 7.9E-10 75.5 29.9 228 100-338 124-507 (599)
270 2xzh_A Clathrin heavy chain 1; 98.7 0.00014 4.8E-09 62.8 29.1 231 90-336 71-334 (365)
271 1flg_A Protein (quinoprotein e 98.7 2.5E-05 8.6E-10 75.3 27.9 140 194-337 291-519 (582)
272 3qqz_A Putative uncharacterize 98.7 7E-05 2.4E-09 63.4 27.2 198 122-332 20-251 (255)
273 3v9f_A Two-component system se 98.7 5.9E-05 2E-09 75.9 31.5 237 84-336 311-570 (781)
274 3sov_A LRP-6, low-density lipo 98.6 7.2E-05 2.5E-09 66.3 28.4 228 99-338 6-242 (318)
275 2xzh_A Clathrin heavy chain 1; 98.6 0.00015 5.1E-09 62.6 28.7 257 108-412 51-333 (365)
276 3p5b_L Low density lipoprotein 98.6 0.00029 1E-08 64.6 32.5 175 156-335 92-278 (400)
277 3tc9_A Hypothetical hydrolase; 98.6 9.4E-05 3.2E-09 68.6 28.8 148 132-289 139-300 (430)
278 1k3i_A Galactose oxidase precu 98.6 3.4E-06 1.1E-10 83.1 19.7 239 90-336 190-499 (656)
279 3m0c_C LDL receptor, low-densi 98.6 0.00022 7.5E-09 71.0 31.8 229 98-338 396-636 (791)
280 3qqz_A Putative uncharacterize 98.5 0.00018 6.1E-09 60.9 26.2 197 80-288 21-251 (255)
281 4hw6_A Hypothetical protein, I 98.5 0.00018 6E-09 66.7 28.7 191 132-332 141-372 (433)
282 1bpo_A Protein (clathrin); cla 98.5 0.0005 1.7E-08 61.8 30.1 231 90-336 70-333 (494)
283 4hw6_A Hypothetical protein, I 98.5 0.00013 4.4E-09 67.6 27.5 238 86-333 139-432 (433)
284 3tc9_A Hypothetical hydrolase; 98.5 9.1E-05 3.1E-09 68.7 26.2 237 87-333 138-429 (430)
285 3sov_A LRP-6, low-density lipo 98.5 0.00051 1.7E-08 60.7 30.6 174 156-334 13-197 (318)
286 1bpo_A Protein (clathrin); cla 98.5 0.00075 2.6E-08 60.7 30.9 258 107-412 49-332 (494)
287 2xe4_A Oligopeptidase B; hydro 98.5 1.8E-05 6.2E-10 79.1 21.3 242 87-336 175-460 (751)
288 4a0p_A LRP6, LRP-6, low-densit 98.4 0.00079 2.7E-08 65.4 31.6 227 98-337 7-240 (628)
289 3m0c_C LDL receptor, low-densi 98.4 0.0011 3.7E-08 66.0 32.9 175 156-335 404-590 (791)
290 3kya_A Putative phosphatase; s 98.4 0.00031 1.1E-08 65.4 27.0 247 87-338 140-479 (496)
291 3amr_A 3-phytase; beta-propell 98.4 8.4E-05 2.9E-09 65.4 21.6 182 142-333 41-262 (355)
292 4a0p_A LRP6, LRP-6, low-densit 98.4 0.0017 5.8E-08 63.1 33.0 174 156-335 15-198 (628)
293 3kya_A Putative phosphatase; s 98.3 0.0028 9.4E-08 59.1 29.9 191 132-331 141-407 (496)
294 2xe4_A Oligopeptidase B; hydro 98.3 6.1E-05 2.1E-09 75.2 19.5 193 131-332 175-398 (751)
295 1k3i_A Galactose oxidase precu 98.2 0.0003 1E-08 69.1 23.4 232 87-323 244-530 (656)
296 1n7d_A LDL receptor, low-densi 98.2 8E-06 2.7E-10 80.6 11.7 229 99-340 379-620 (699)
297 1n7d_A LDL receptor, low-densi 98.1 1.6E-05 5.6E-10 78.4 12.6 174 156-334 386-571 (699)
298 3amr_A 3-phytase; beta-propell 98.1 0.0018 6.1E-08 57.1 22.9 133 193-333 49-209 (355)
299 3s94_A LRP-6, low-density lipo 98.0 0.0027 9.2E-08 61.6 25.7 228 98-338 10-247 (619)
300 2p9w_A MAL S 1 allergenic prot 98.0 0.00087 3E-08 58.5 19.1 160 218-410 16-214 (334)
301 2xbg_A YCF48-like protein; pho 98.0 0.007 2.4E-07 53.7 32.3 270 85-408 35-319 (327)
302 3ott_A Two-component system se 98.0 0.018 6.3E-07 57.5 32.9 230 85-336 21-262 (758)
303 3pbp_A Nucleoporin NUP82; beta 97.9 0.0019 6.5E-08 58.1 19.9 156 220-406 26-207 (452)
304 2ism_A Putative oxidoreductase 97.9 0.012 4E-07 52.8 26.5 190 131-335 32-298 (352)
305 3sre_A PON1, serum paraoxonase 97.8 0.0066 2.3E-07 54.1 22.5 202 88-298 52-308 (355)
306 2p9w_A MAL S 1 allergenic prot 97.8 0.0081 2.8E-07 52.4 21.8 192 133-334 16-265 (334)
307 3s94_A LRP-6, low-density lipo 97.7 0.038 1.3E-06 53.5 28.7 223 99-335 319-552 (619)
308 1xi4_A Clathrin heavy chain; a 97.7 0.002 6.9E-08 66.6 19.1 219 107-338 49-293 (1630)
309 3ei3_A DNA damage-binding prot 97.7 0.063 2.2E-06 55.9 37.8 276 85-411 553-913 (1158)
310 2ism_A Putative oxidoreductase 97.7 0.023 7.9E-07 50.9 27.4 229 85-322 30-333 (352)
311 2xbg_A YCF48-like protein; pho 97.6 0.034 1.2E-06 49.2 25.9 230 85-332 79-320 (327)
312 2vpj_A Kelch-like protein 12; 97.5 0.037 1.3E-06 48.1 24.2 230 96-336 14-280 (301)
313 3a9g_A Putative uncharacterize 97.5 0.048 1.6E-06 48.8 28.0 231 85-322 28-330 (354)
314 1xi4_A Clathrin heavy chain; a 97.5 0.0041 1.4E-07 64.4 17.5 233 90-338 70-335 (1630)
315 3pbp_A Nucleoporin NUP82; beta 97.5 0.007 2.4E-07 54.5 17.0 133 192-330 39-208 (452)
316 3a9g_A Putative uncharacterize 97.4 0.06 2E-06 48.2 26.3 192 130-335 29-297 (354)
317 2g8s_A Glucose/sorbosone dehyd 97.3 0.097 3.3E-06 46.8 25.7 239 86-332 18-350 (353)
318 3ott_A Two-component system se 97.2 0.21 7.1E-06 49.9 31.2 234 85-336 323-588 (758)
319 3sre_A PON1, serum paraoxonase 97.2 0.1 3.6E-06 46.4 22.5 192 133-331 53-295 (355)
320 2xn4_A Kelch-like protein 2; s 97.2 0.097 3.3E-06 45.5 23.3 229 97-336 16-278 (302)
321 2vpj_A Kelch-like protein 12; 97.1 0.11 3.9E-06 45.0 22.1 173 156-336 31-233 (301)
322 3ei3_A DNA damage-binding prot 97.1 0.38 1.3E-05 50.2 33.4 171 156-334 807-999 (1158)
323 1zgk_A Kelch-like ECH-associat 97.0 0.16 5.3E-06 44.3 23.3 233 94-336 22-289 (308)
324 3sbq_A Nitrous-oxide reductase 97.0 0.24 8.1E-06 46.3 23.8 231 95-336 140-480 (638)
325 3s25_A Hypothetical 7-bladed b 97.0 0.16 5.4E-06 44.2 24.2 160 156-335 37-217 (302)
326 2uvk_A YJHT; unknown function, 96.9 0.18 6.2E-06 44.9 20.8 48 239-288 168-224 (357)
327 3ii7_A Kelch-like protein 7; p 96.8 0.21 7.2E-06 43.4 24.6 227 98-336 13-274 (306)
328 1zgk_A Kelch-like ECH-associat 96.7 0.26 8.8E-06 42.9 21.5 173 156-336 39-242 (308)
329 4asc_A Kelch repeat and BTB do 96.5 0.39 1.3E-05 41.9 22.6 175 156-336 13-223 (315)
330 2g8s_A Glucose/sorbosone dehyd 96.4 0.47 1.6E-05 42.3 27.2 135 131-275 19-214 (353)
331 2be1_A Serine/threonine-protei 96.3 0.033 1.1E-06 49.2 11.0 135 193-331 19-181 (339)
332 2xn4_A Kelch-like protein 2; s 96.2 0.51 1.7E-05 40.8 22.7 174 156-336 30-231 (302)
333 2uvk_A YJHT; unknown function, 96.2 0.6 2.1E-05 41.5 22.9 140 194-337 168-345 (357)
334 4asc_A Kelch repeat and BTB do 96.2 0.58 2E-05 40.8 23.3 228 99-336 7-279 (315)
335 1tl2_A L10, protein (tachylect 95.9 0.099 3.4E-06 42.6 10.7 103 215-328 41-157 (236)
336 1tl2_A L10, protein (tachylect 95.7 0.047 1.6E-06 44.5 8.3 112 259-406 41-158 (236)
337 3das_A Putative oxidoreductase 95.6 1.1 3.8E-05 39.6 28.3 231 80-322 26-326 (347)
338 2be1_A Serine/threonine-protei 95.6 0.097 3.3E-06 46.2 10.7 106 100-212 13-139 (339)
339 3das_A Putative oxidoreductase 95.6 1.1 3.9E-05 39.5 27.8 194 130-335 32-293 (347)
340 3s25_A Hypothetical 7-bladed b 95.4 1.2 4.2E-05 38.5 26.1 157 156-334 88-255 (302)
341 1cru_A Protein (soluble quinop 95.3 1.2 4.3E-05 41.1 17.6 62 259-321 27-97 (454)
342 2woz_A Kelch repeat and BTB do 95.2 1.4 4.9E-05 38.2 21.2 175 156-336 24-233 (318)
343 2zwa_A Leucine carboxyl methyl 94.4 4.3 0.00015 39.9 22.0 196 95-294 396-639 (695)
344 3ii7_A Kelch-like protein 7; p 94.0 2.7 9.4E-05 36.1 23.4 190 96-293 55-275 (306)
345 2zwa_A Leucine carboxyl methyl 93.9 5.2 0.00018 39.3 20.5 178 156-336 412-637 (695)
346 3sbq_A Nitrous-oxide reductase 93.7 4.6 0.00016 37.9 23.2 187 140-335 141-409 (638)
347 2woz_A Kelch repeat and BTB do 93.7 3.2 0.00011 36.0 23.0 229 99-336 18-289 (318)
348 1cru_A Protein (soluble quinop 92.8 5.9 0.0002 36.5 29.2 108 85-192 26-160 (454)
349 2wg3_C Hedgehog-interacting pr 89.2 14 0.00046 34.2 15.4 104 217-324 16-159 (463)
350 3q6k_A 43.2 kDa salivary prote 88.8 13 0.00043 33.3 23.2 137 195-334 124-306 (381)
351 3b7f_A Glycosyl hydrolase, BNR 87.4 16 0.00053 32.7 25.4 59 260-321 233-296 (394)
352 4gq2_M Nucleoporin NUP120; bet 87.2 10 0.00035 38.7 14.2 37 304-340 236-272 (950)
353 3zwu_A Alkaline phosphatase PH 86.9 13 0.00043 35.6 13.6 59 261-321 478-548 (592)
354 3qhy_B Beta-lactamase inhibito 85.9 15 0.00052 31.2 15.6 222 87-336 25-248 (282)
355 3qhy_B Beta-lactamase inhibito 83.4 20 0.00068 30.4 18.3 184 130-336 24-209 (282)
356 2wg3_C Hedgehog-interacting pr 82.1 31 0.0011 31.7 25.7 96 131-233 15-156 (463)
357 3q6k_A 43.2 kDa salivary prote 81.4 29 0.00099 30.9 27.9 206 84-321 85-341 (381)
358 3no0_A DNA gyrase subunit A; D 80.7 25 0.00086 29.7 12.4 75 258-336 67-148 (276)
359 4hvt_A Ritya.17583.B, post-pro 76.6 60 0.0021 31.8 25.8 176 156-335 156-382 (711)
360 4gq2_M Nucleoporin NUP120; bet 75.9 15 0.00051 37.6 10.5 39 260-299 237-275 (950)
361 3f7f_A Nucleoporin NUP120; nuc 74.8 20 0.0007 34.9 10.4 74 259-336 222-307 (729)
362 4a9v_A PHOX; hydrolase, beta-p 73.8 20 0.00069 33.9 9.8 62 259-322 476-549 (592)
363 4hvt_A Ritya.17583.B, post-pro 66.0 1E+02 0.0036 30.2 24.2 238 88-333 131-429 (711)
364 4fhn_B Nucleoporin NUP120; pro 58.5 9.1 0.00031 40.1 4.8 39 260-299 239-277 (1139)
365 3uc1_A DNA gyrase subunit A; D 57.6 95 0.0032 26.9 15.7 105 226-336 109-230 (327)
366 3kvp_A Uncharacterized protein 57.0 22 0.00077 22.2 4.4 29 391-421 28-56 (72)
367 3kci_A Probable E3 ubiquitin-p 53.8 1.2E+02 0.0041 26.9 24.0 154 177-336 54-243 (389)
368 4gz8_A Semaphorin-3A; multi-do 51.2 50 0.0017 32.0 8.2 58 272-329 431-495 (667)
369 3zwu_A Alkaline phosphatase PH 49.5 63 0.0021 30.8 8.5 18 381-398 531-548 (592)
370 3mvd_K Regulator of chromosome 48.0 1.5E+02 0.0052 26.5 31.1 188 131-335 76-323 (423)
371 4a9v_A PHOX; hydrolase, beta-p 47.9 61 0.0021 30.7 7.9 57 177-233 477-549 (592)
372 3no0_A DNA gyrase subunit A; D 45.4 1.4E+02 0.0046 25.1 16.5 105 226-336 80-198 (276)
373 1sqj_A OXG-RCBH, oligoxylogluc 43.9 1.8E+02 0.0061 28.9 11.3 62 258-321 14-82 (789)
374 1q47_A Semaphorin 3A; beta pro 43.7 48 0.0016 30.8 6.7 70 260-329 405-487 (495)
375 4fhn_B Nucleoporin NUP120; pro 43.3 1.1E+02 0.0037 32.1 9.9 38 131-173 239-276 (1139)
376 3mez_B Mannose-specific lectin 36.2 1.1E+02 0.0038 21.4 9.2 26 307-334 59-84 (113)
377 4d9s_A UVB-resistance protein 34.7 2.5E+02 0.0084 25.0 33.9 192 129-336 67-307 (406)
378 3f7f_A Nucleoporin NUP120; nuc 34.5 1.9E+02 0.0066 28.2 9.3 37 86-124 222-259 (729)
379 3al9_A Plexin-A2; beta-propell 32.4 1.2E+02 0.0041 28.5 7.5 69 260-329 401-476 (539)
380 3kci_A Probable E3 ubiquitin-p 31.7 2.7E+02 0.0092 24.5 30.9 191 131-336 54-295 (389)
381 3hx6_A Type 4 fimbrial biogene 31.4 3.4E+02 0.012 25.6 11.3 54 283-336 225-286 (570)
382 1suu_A DNA gyrase subunit A; t 30.1 2.6E+02 0.0089 23.9 18.1 113 269-411 113-231 (312)
383 4a54_B DCP2, mRNA decapping co 28.9 49 0.0017 18.2 2.4 17 3-19 30-46 (52)
384 3uc1_A DNA gyrase subunit A; D 28.8 2.8E+02 0.0096 23.9 17.4 123 259-410 95-227 (327)
385 1zvt_A Topoisomerase IV subuni 28.5 2.5E+02 0.0085 23.2 11.5 78 304-410 84-162 (256)
386 3nvq_A Semaphorin-7A; beta-pro 24.7 2.3E+02 0.0077 27.0 7.8 59 271-329 381-444 (590)
387 1olz_A Semaphorin 4D; developm 24.6 2.8E+02 0.0097 26.8 8.7 69 261-329 399-477 (663)
388 2zux_A YESW protein; beta-prop 23.1 4.8E+02 0.017 24.6 20.8 150 157-316 230-426 (591)
389 1wp5_A Topoisomerase IV; broke 22.4 3.7E+02 0.013 23.1 20.9 104 226-335 106-226 (323)
390 1suu_A DNA gyrase subunit A; t 22.4 3.6E+02 0.012 22.9 20.3 105 226-336 114-233 (312)
391 1zso_A Hypothetical protein; s 20.7 1.3E+02 0.0044 23.0 4.3 30 383-414 112-141 (164)
No 1
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-45 Score=333.00 Aligned_cols=285 Identities=16% Similarity=0.234 Sum_probs=252.7
Q ss_pred ccCCCCCCCeEEEEEcCC----CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQD----HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~----~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
....+|.+.|++++|+|+ +.+|++|+ |+.|+||++...+......+. +|...|.++.+++++..+++++.|
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~-gh~~~v~~~~~~~~~~~l~s~s~D--- 101 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSVDISHTLPIAASSSLD--- 101 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECSSSSEEEEEETT---
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec-cCCCCEEEEEECCCCCEEEEEeCC---
Confidence 456789999999999985 56899988 566999999877665555665 899999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
+.|++||+.+++.+..+. +...+.+++|+|++.++++ |+.|++||+++++....+..+...+..++|+|+++.+
T Consensus 102 --~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 102 --AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp --SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred --CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 999999999999998888 7889999999999999884 8999999999999988888888899999999999855
Q ss_pred EEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 230 VLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
+. |+.|+.|++||++++. +..+.+|...|.+++|+|++++|++|+.|+. |++||+++++++..+.+ |...|.+
T Consensus 180 as---g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~ 253 (321)
T 3ow8_A 180 AS---GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLN 253 (321)
T ss_dssp EE---EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred EE---EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEE
Confidence 43 3489999999998854 5567889999999999999999999999999 99999999999888875 6689999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF 388 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (432)
++|+|++++|++++.|++|++||+.++++ +..+..|.+.|.+++|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-----------------------------------~~~~~~h~~~v~~v~~ 298 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTC-----------------------------------VHTFFDHQDQVWGVKY 298 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEE-----------------------------------EEEECCCSSCEEEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEE-----------------------------------EEEEcCCCCcEEEEEE
Confidence 99999999999999999999999988763 4457789999999999
Q ss_pred ccCCCEEEEEecCCeEEEEEec
Q 014007 389 GHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 389 s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+|++++|++++.||.|++|++.
T Consensus 299 s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 299 NGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999963
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-45 Score=340.37 Aligned_cols=283 Identities=15% Similarity=0.206 Sum_probs=253.7
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
...+.+|...|++++|+|++.+|++|+ |+.|+|||+.+++.. ..+. +|...|.+++|++++..+++++.| +
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--~~l~-~h~~~V~~v~~~~~~~~l~sgs~D-----~ 172 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLK-GHTDSVQDISFDHSGKLLASCSAD-----M 172 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-ccCCcEEEEEEcCCCCEEEEEeCC-----C
Confidence 445678999999999999999999998 555999999887765 5565 789999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
+|++||+.+++++..+. |...|.+++|+|++.++++ |++|++||+++++++..+..|...+..+.+++++..+ +
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l--~ 250 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI--A 250 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE--E
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE--E
Confidence 99999999999999888 9999999999999988874 8999999999999999999999999999999998744 3
Q ss_pred eecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCC--------------------CCEEEEEcCCCceEEEEECCCC
Q 014007 233 CPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQD--------------------GQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~--------------------~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
+ |+.|+.|++||+++.. ...+.+|...|.+++|+|+ |.+|++|+.|+. |++||++++
T Consensus 251 s-~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~ 328 (410)
T 1vyh_C 251 S-CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTG 328 (410)
T ss_dssp E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTT
T ss_pred E-EcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCC
Confidence 3 3489999999998854 4567899999999999996 678999999999 999999999
Q ss_pred ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
+++..+.+ |...|.+++|+|+|++|++|+.||.|++||+.+++.
T Consensus 329 ~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~---------------------------------- 372 (410)
T 1vyh_C 329 MCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC---------------------------------- 372 (410)
T ss_dssp EEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC----------------------------------
T ss_pred ceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce----------------------------------
Confidence 99999985 668999999999999999999999999999987763
Q ss_pred eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
+..+.+|.+.|++++|+|++++|++|+.||.|++|++
T Consensus 373 -~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 373 -MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp -CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred -EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 3457789999999999999999999999999999985
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-44 Score=326.83 Aligned_cols=285 Identities=13% Similarity=0.124 Sum_probs=249.0
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
....+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+.. ..+. .|...+.+++|++++..+++++.|
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~s~~~d----- 118 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--HAIP-LRSSWVMTCAYAPSGNYVACGGLD----- 118 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--EEEE-CSSSCEEEEEECTTSSEEEEEETT-----
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--eEee-cCCccEEEEEECCCCCEEEEEeCC-----
Confidence 3466789999999999999999999998 555999999887765 4444 588889999999999999999999
Q ss_pred CeEEEEeCCCCc----eeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSR----CIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
+.|++||+.+++ ....+. |.+.|.++.|++++.++.. |+.|++||+++++.+..+..|...+..++|+|+++.
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 999999998753 344555 8999999999999986663 899999999999999999999999999999999874
Q ss_pred EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+ ++ |+.|+.|++||++++. ...+.+|...|.+++|+|++++|++|+.|+. |++||+++++.+..+....+...|.
T Consensus 199 l--~s-g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 199 F--VS-GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp E--EE-EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEE
T ss_pred E--EE-EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceE
Confidence 3 33 4489999999998854 5678899999999999999999999999999 9999999998888776433445799
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
+++|+|+|++|++|+.||.|++||+.+++. +..+.+|.+.|.+++
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-----------------------------------~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADR-----------------------------------AGVLAGHDNRVSCLG 319 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEE
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcE-----------------------------------eeEeecCCCcEEEEE
Confidence 999999999999999999999999987652 446789999999999
Q ss_pred EccCCCEEEEEecCCeEEEEE
Q 014007 388 FGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 388 ~s~~~~~l~~~~~dg~v~iw~ 408 (432)
|+|+|++|++|+.||.|+||+
T Consensus 320 ~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 320 VTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999995
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-43 Score=323.60 Aligned_cols=287 Identities=11% Similarity=0.092 Sum_probs=247.0
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
....+.+|.+.|++++|+|++++|++|+. +.|+|||..+.+... .+. .+...+.+++|+|++..+++++.|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~-~~~~~v~~~~~sp~g~~lasg~~d----- 127 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--AVT-MPCTWVMACAYAPSGCAIACGGLD----- 127 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEE-CSSSCCCEEEECTTSSEEEEESTT-----
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--EEe-cCCCCEEEEEECCCCCEEEEeeCC-----
Confidence 34667899999999999999999999995 459999988776653 343 477789999999999999999999
Q ss_pred CeEEEEeCCCC------ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007 156 NKVMIWDDHQS------RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (432)
Q Consensus 156 ~~v~iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (432)
+.+++|++... .....+. |...|.+++|++++..+++ |++|++||+++++.+..+..|...+.+++++|+
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPS 207 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCC
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeC
Confidence 99999998643 2344555 9999999999999987773 899999999999999999999999999999886
Q ss_pred CCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
....++++ |+.|+.|++||++++. +..+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+..+.+..
T Consensus 208 ~~g~~l~s-gs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 208 ETGNTFVS-GGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp SSCCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCS
T ss_pred CCCCEEEE-EeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCccc
Confidence 54334454 4589999999998854 5667899999999999999999999999999 9999999998887776544445
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
.+.+++|+|+|++|++|+.|+.|++||+.+++. +..+.+|.+.|+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-----------------------------------~~~l~~h~~~v~ 330 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-----------------------------------VSILFGHENRVS 330 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-----------------------------------EEEECCCSSCEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-----------------------------------EEEEECCCCcEE
Confidence 789999999999999999999999999987762 345778999999
Q ss_pred EEEEccCCCEEEEEecCCeEEEEE
Q 014007 385 IVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
+++|+|||++|++|+.||.|+||+
T Consensus 331 ~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999999999999999995
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-44 Score=325.84 Aligned_cols=282 Identities=12% Similarity=0.115 Sum_probs=229.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCC----------CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDP----------FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
..|...|.+++|+|||++|+++++.++++||... ........+ .+...|.+++|++++. +++++.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~~-l~~~s~d- 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGERG-ILVASDS- 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTTE-EEEEETT-
T ss_pred ccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCCe-EEEEECC-
Confidence 3467789999999999999999988888887321 000000111 2456799999999975 5566777
Q ss_pred CCCCCeEEEEeCCCCceeEEe-----ecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007 152 QYPLNKVMIWDDHQSRCIGEL-----SFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (432)
|+|+|||+.+++.+..+ .|...|.+++|+|++.++++ |++|++||+++++++..+.+|...|.+++|+
T Consensus 103 ----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~ 178 (344)
T 4gqb_B 103 ----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAAS 178 (344)
T ss_dssp ----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEec
Confidence 99999999998765433 28899999999999999884 8999999999999999999999999999999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCce-eee--eccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI--MAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~--~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
+++..+++. ++.|+.|++||++++.. ..+ ..|...+.+++|+| ++++|++|+.|+. |++||+++++++..+..
T Consensus 179 ~~~~~~l~s--~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 179 PHKDSVFLS--CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp SSCTTEEEE--EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred CCCCCceee--eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence 999876543 35899999999998543 333 35666799999999 5678899999999 99999999999999985
Q ss_pred CCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe
Q 014007 300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL 378 (432)
Q Consensus 300 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (432)
|...|++++|+|++ ++|++|+.|++|+|||+.+++ +..+.+
T Consensus 256 --h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~------------------------------------~~~~~~ 297 (344)
T 4gqb_B 256 --HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE------------------------------------LFRSQA 297 (344)
T ss_dssp --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE------------------------------------EEEECC
T ss_pred --CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc------------------------------------EEEEcC
Confidence 66899999999998 579999999999999998775 345678
Q ss_pred cCCCceEEEEccCCC-EEEEEecCCeEEEEEecCC
Q 014007 379 VEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 379 ~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~ 412 (432)
|.+.|++++|+|+++ +|++++.||+|++|+++.+
T Consensus 298 H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 298 HRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999999999999986 5678999999999999654
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-43 Score=324.33 Aligned_cols=284 Identities=14% Similarity=0.146 Sum_probs=226.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcC------C-cEEEEEcCCCeeEEE--eecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTD------H-GFRIYNCDPFREIFR--RDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~------~-~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
...|...|++++|+|||++|++|++ + .|++|+...+..... ... .+|...|.+++|++++.+++++ .|
T Consensus 38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~-~~~~~~V~~~~~s~d~~~l~~s-~d- 114 (357)
T 4g56_B 38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG-VQTEAGVTDVAWVSEKGILVAS-DS- 114 (357)
T ss_dssp --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE-EECSSCEEEEEEETTTEEEEEE-TT-
T ss_pred cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc-CCCCCCEEEEEEcCCCCEEEEE-CC-
Confidence 3569999999999999999999984 2 388888755443211 111 1477889999999998877654 46
Q ss_pred CCCCCeEEEEeCCCCceeEE-----eecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007 152 QYPLNKVMIWDDHQSRCIGE-----LSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (432)
|+|++||+.+++.... ..|...|.+++|+|++.++++ |+.|++||+++++.+..+..|...+.+++|+
T Consensus 115 ----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 115 ----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp ----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC
T ss_pred ----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 9999999988865432 137899999999999998884 8999999999999999999999999999999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCcee---eeeccCCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTK---FIMAHDSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
++++.+++. ++.|+.|++||++++... ....|...+.+++|+|+ +.+|++|+.|+. |++||+++++++..+..
T Consensus 191 ~~~~~~~~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 191 PGKDTIFLS--CGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp TTCSSCEEE--EETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEECC
T ss_pred cCCCceeee--eccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEec
Confidence 998776543 347999999999885432 23457788999999997 568899999999 99999999999988875
Q ss_pred CCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe
Q 014007 300 GADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL 378 (432)
Q Consensus 300 ~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (432)
|...|++++|+|++ ++|++|+.|++|+|||+++++ +....+
T Consensus 268 --~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~------------------------------------~~~~~~ 309 (357)
T 4g56_B 268 --HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE------------------------------------VFRDLS 309 (357)
T ss_dssp --CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE------------------------------------EEEECC
T ss_pred --cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc------------------------------------EeEECC
Confidence 66899999999987 579999999999999998876 223447
Q ss_pred cCCCceEEEEcc-CCCEEEEEecCCeEEEEEecCC
Q 014007 379 VEGSPYIVAFGH-QKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 379 ~~~~v~~~~~s~-~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
|.+.|++++|+| |+++|++++.||.|++|+++..
T Consensus 310 H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 310 HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999998 8999999999999999998553
No 7
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-42 Score=312.10 Aligned_cols=298 Identities=16% Similarity=0.222 Sum_probs=241.4
Q ss_pred ccCCCCCC-CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 79 STSSSPPP-TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~-~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..+.+|.+ .|.+++|+|+|++||+|+ |+.|+||++.+........+..+|...|.+++|+|++..|++++.| +
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~ 83 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----A 83 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----C
Confidence 34567877 999999999999999998 5559999998776544344434799999999999999999999999 9
Q ss_pred eEEEEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC---eeeEEEeeccCCcceEEEecCCC
Q 014007 157 KVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL---KLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 157 ~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
.|++||+..+ +++..+. |...|.+++|+|++.++++ |+.|++||++++ +.+..+..|...+..++|+|+++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 9999998876 4566776 8999999999999998884 899999999875 34566778889999999999998
Q ss_pred cEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-------------
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------------- 291 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------------- 291 (432)
.++. ++.|+.|++||.+... ...+.+|...|.+++|+|+|++|++++.|+. |++||....
T Consensus 164 ~l~s---~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 164 LLAS---ASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp CEEE---EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---C
T ss_pred EEEE---EeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCC
Confidence 5543 3489999999998753 3567899999999999999999999999999 999996322
Q ss_pred --ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007 292 --TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS 369 (432)
Q Consensus 292 --~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (432)
+++..+.+ .|...|.+++|+|++..|++++.|+.|++|+.......... ...+
T Consensus 240 ~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-------------~~~~----------- 294 (345)
T 3fm0_A 240 SWKCICTLSG-FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP-------------TFSL----------- 294 (345)
T ss_dssp EEEEEEEECS-SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC-------------CEEE-----------
T ss_pred ccceeEEecC-CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee-------------eEEE-----------
Confidence 23444443 26789999999999999999999999999999876421110 0000
Q ss_pred ceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecCC
Q 014007 370 EWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 370 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~ 412 (432)
......+|.+.|++++|+|++ .+|++|+.||.|++|++...
T Consensus 295 --~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 295 --TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp --EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred --EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 011224688899999999987 59999999999999998553
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=6.3e-42 Score=306.91 Aligned_cols=284 Identities=12% Similarity=0.132 Sum_probs=241.0
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|.+.|++++|+|++++|++|+ |+.|+|||+.+.... ..+. .|...+.++.|++++..+++++.| +
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~s~s~d-----~ 77 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----F 77 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----S
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--EEee-ccCCcEEEEEEeCCCCEEEEECCC-----C
Confidence 455678999999999999999999998 555999999887765 4554 688899999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
.|++||+.+++.+..+. |...|.+++|+|++.++++ |++|++||++++ .....+..|...+.+++|+|++...+
T Consensus 78 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l- 156 (304)
T 2ynn_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTF- 156 (304)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEE-
T ss_pred EEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEE-
Confidence 99999999999999998 9999999999999998884 899999999887 55677888999999999999654433
Q ss_pred EeecCCCCcEEEEEccCCce-ee-eeccCCceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 232 VCPGLQKGQVRVEHYASKRT-KF-IMAHDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~-~~-~~~~~~~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
++ |+.|+.|++||++.... .. ...|...+..+.|+| ++.+|++|+.|+. |++||+++++++..+.+ |...|.
T Consensus 157 ~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~--h~~~v~ 232 (304)
T 2ynn_A 157 AS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNVS 232 (304)
T ss_dssp EE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEEC--CSSCEE
T ss_pred EE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCC--CCCCEE
Confidence 33 45899999999987432 23 346778899999987 7789999999999 99999999999999986 668999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
+++|+|++++|++|+.||+|++||+.+++. ...+..|.+.+++++
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-----------------------------------~~~~~~~~~~~~~~~ 277 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKV-----------------------------------EKTLNVGLERSWCIA 277 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECCSSSSEEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCce-----------------------------------eeeccCCCccEEEEE
Confidence 999999999999999999999999998763 345667888899999
Q ss_pred EccCCC--EEEEEecCCeEEEEEec
Q 014007 388 FGHQKN--TVVILGMDGSFYRCQFD 410 (432)
Q Consensus 388 ~s~~~~--~l~~~~~dg~v~iw~~~ 410 (432)
|+|++. +|++|+.|| +.+|++.
T Consensus 278 ~~~~~~~~~~asg~~~g-~~~~~~~ 301 (304)
T 2ynn_A 278 THPTGRKNYIASGFDNG-FTVLSLG 301 (304)
T ss_dssp ECTTCGGGCEEEEETTE-EEEEECC
T ss_pred ECCCCCceEEEEecCCc-eEEEEec
Confidence 999875 477776665 6666653
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-42 Score=320.81 Aligned_cols=293 Identities=15% Similarity=0.167 Sum_probs=240.7
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
....+.+|.+.|++++|+|++++|++|+ |+.|+|||+.+.+.. ..+. .|...|.+++|+|++..+++++.|
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--~~~~-~h~~~v~~~~~s~~g~~las~~~d----- 129 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--HAIK-LHCPWVMECAFAPNGQSVACGGLD----- 129 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--EEEE-CCCTTCCCCEECTTSSEEEECCSS-----
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--eEEe-cCCCCEEEEEECCCCCEEEEeeCC-----
Confidence 3467889999999999999999999998 555999999888766 4454 688889999999999999999999
Q ss_pred CeEEEEeCCCCc-------eeEEee-cCCceEEEEEecCc-cEEE---eCCeEEEEEcCCCeeeEEE-----eeccCCcc
Q 014007 156 NKVMIWDDHQSR-------CIGELS-FRSEVRSVKLRRDR-IIVV---LEQKIFVYNFADLKLLHQI-----ETIANPKG 218 (432)
Q Consensus 156 ~~v~iwd~~~~~-------~~~~~~-~~~~v~~~~~~~~~-~~~~---~d~~i~i~d~~~~~~~~~~-----~~~~~~~~ 218 (432)
+.|++||+.+.. ....+. |.+.|.++.|.|++ ..++ .|++|++||+++++.+..+ ..|...+.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999987532 233455 88999999999964 3344 2899999999999888777 45777888
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
.+++++....++ ++ |+.|+.|++||++. ..+..+.+|...|.+++|+|++++|++|+.|++ |++||+++++.+..
T Consensus 210 ~~~~~~~~~~~l-~s-gs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~ 286 (380)
T 3iz6_a 210 SLSINSLNANMF-IS-GSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQV 286 (380)
T ss_dssp EEEECSSSCCEE-EE-EETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEE
T ss_pred EEEeecCCCCEE-EE-EECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEE
Confidence 888877444433 33 45899999999974 456778899999999999999999999999999 99999999999888
Q ss_pred EEeCCC-----cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 297 VRRGAD-----RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 297 ~~~~~~-----~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
+..+.. ...|++++|+|+|++|++|+.||.|++||+.+++.+...
T Consensus 287 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~------------------------------ 336 (380)
T 3iz6_a 287 YNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL------------------------------ 336 (380)
T ss_dssp ECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE------------------------------
T ss_pred ecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE------------------------------
Confidence 865321 124899999999999999999999999999877621100
Q ss_pred eeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 372 SVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 372 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.....+|.+.|++++|+|||++|++|+.||.|+||++..
T Consensus 337 -~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 337 -GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp -CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred -ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 000146888999999999999999999999999999853
No 10
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-41 Score=304.98 Aligned_cols=293 Identities=16% Similarity=0.220 Sum_probs=240.0
Q ss_pred ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
..+.+|.+.|++++|+|++ ++|++|+ |+.|++|++..... .....+. +|...|.++.|++++..+++++.|
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D--- 86 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWD--- 86 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCC---
Confidence 4678999999999999965 7898888 55599999864321 2234565 799999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC--
Q 014007 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG-- 227 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 227 (432)
++|++||+.+++.+..+. |...|.+++|+|++.++++ |++|++||++ ++.+..+..|...+..+.+.|...
T Consensus 87 --~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 87 --KTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred --CEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 999999999999999988 9999999999999988884 8999999986 567778888999999999998643
Q ss_pred --cEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007 228 --SLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 228 --~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
...+++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++++.|+. |++||+.+++++..+.. ..
T Consensus 164 ~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---~~ 238 (319)
T 3frx_A 164 DDSVTIIS-AGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---QD 238 (319)
T ss_dssp --CCEEEE-EETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---CS
T ss_pred CCccEEEE-EeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---CC
Confidence 223443 4589999999998854 4567799999999999999999999999999 99999999999998883 46
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce
Q 014007 305 EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY 384 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 384 (432)
.|.+++|+|++.+|++++.+ .+++|++.....+... .+... .....|...+.
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~---------------------~~~~~------~~~~~~~~~v~ 290 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDL---------------------RPEFA------GYSKAAEPHAV 290 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEE---------------------CCCCT------TCCGGGCCCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeecc---------------------Ccccc------ccccCcCccee
Confidence 89999999999999988754 5999999875421110 00000 00123456789
Q ss_pred EEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 385 IVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 385 ~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+++|+|||++|++|+.||.|++|++..
T Consensus 291 ~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 291 SLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred EEEECCCCCEEEEeecCceEEEEEEee
Confidence 999999999999999999999999854
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.3e-41 Score=311.05 Aligned_cols=280 Identities=15% Similarity=0.180 Sum_probs=236.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeeccc-----------------CcceeEEEEeeeCCeEEEe
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFER-----------------GGGIGVVEMLFRCNILALV 145 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~~~ 145 (432)
.|...|++++|+|||++||+|+++.++||++.+++... .+.. .+...|.+++|++++..++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVA--RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEE--EECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEE--EecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 59999999999999999999998889999998876653 2220 1223488999999999999
Q ss_pred cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEE
Q 014007 146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCA 221 (432)
Q Consensus 146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 221 (432)
+++.| +.|++||+.+++.+..+. |...|.+++|+|++.++++ |++|++||+++++....+. +...+..++
T Consensus 140 s~~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 140 TGAED-----RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA 213 (393)
T ss_dssp EEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred EEcCC-----CeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence 99999 999999999999988888 9999999999999988884 8999999999998887775 456788899
Q ss_pred Eec-CCCcEEEEeecCCCCcEEEEEccCCcee-ee-------eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-
Q 014007 222 VSQ-GVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG- 291 (432)
Q Consensus 222 ~~~-~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~-------~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~- 291 (432)
++| ++..+ ++ |+.|+.|++||++++... .+ .+|...|.+++|+|+|++|++|+.|+. |++||+++.
T Consensus 214 ~~~~~~~~l--~~-~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~~ 289 (393)
T 1erj_A 214 VSPGDGKYI--AA-GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN 289 (393)
T ss_dssp ECSTTCCEE--EE-EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----
T ss_pred EECCCCCEE--EE-EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCCC
Confidence 999 55533 33 448999999999885432 23 578999999999999999999999999 999999763
Q ss_pred -----------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007 292 -----------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK 360 (432)
Q Consensus 292 -----------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
.+...+.+ |...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~----------------------- 344 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP----------------------- 344 (393)
T ss_dssp -----------CEEEEEEC--CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-----------------------
T ss_pred CcccccCCCCCcceEEEec--ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-----------------------
Confidence 34455554 668899999999999999999999999999988762
Q ss_pred ecccceeecceeeEEEEecCCCceEEEEcc------CCCEEEEEecCCeEEEEEecC
Q 014007 361 GVLPKYFSSEWSVAQFRLVEGSPYIVAFGH------QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|.+.|.+++|++ ++++|++|+.||.|+||++..
T Consensus 345 ------------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 345 ------------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp ------------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred ------------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 446788999999999986 688999999999999999853
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.9e-41 Score=301.10 Aligned_cols=286 Identities=14% Similarity=0.255 Sum_probs=245.1
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|...|++++|+|++++|++|+ |+.|++|++.+++.. ..+. +|...|.+++|++++..+++++.| +
T Consensus 16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d-----~ 87 (312)
T 4ery_A 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTIS-GHKLGISDVAWSSDSNLLVSASDD-----K 87 (312)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--hhhc-cCCCceEEEEEcCCCCEEEEECCC-----C
Confidence 456678999999999999999999998 555999999877655 4454 688999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|++||+++++.+..+..|...+..++|+++++.++.
T Consensus 88 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 166 (312)
T 4ery_A 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS- 166 (312)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE-
Confidence 99999999999999988 9999999999999998884 899999999999999999999999999999999875432
Q ss_pred eecCCCCcEEEEEccCCce-eee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc-eEEE
Q 014007 233 CPGLQKGQVRVEHYASKRT-KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE-IYSL 309 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~-~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~-i~~~ 309 (432)
++.|+.|++||++++.. ..+ ..+...+.+++|+|++++|++++.|+. |++||+++++++..+..+..... +...
T Consensus 167 --~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 167 --SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp --EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred --EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEE
Confidence 34899999999988554 333 456778999999999999999999999 99999999999988876432222 2233
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc
Q 014007 310 AFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG 389 (432)
Q Consensus 310 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 389 (432)
...+++.+|++|+.||.|++||+.+++. +..+.+|.+.|.+++|+
T Consensus 244 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----------------------------------~~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEI-----------------------------------VQKLQGHTDVVISTACH 288 (312)
T ss_dssp EECSSSCEEEECCTTSCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCEEEEEECCCchh-----------------------------------hhhhhccCCcEEEEeec
Confidence 3446889999999999999999988762 44677899999999999
Q ss_pred cCCCEEEEEe--cCCeEEEEEec
Q 014007 390 HQKNTVVILG--MDGSFYRCQFD 410 (432)
Q Consensus 390 ~~~~~l~~~~--~dg~v~iw~~~ 410 (432)
|+++.|++++ .||.|++|+.|
T Consensus 289 p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 289 PTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSSEEEEEECTTTCCEEEEECC
T ss_pred CcCCceEEEEccCCccEEEecCC
Confidence 9999999987 69999999975
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-40 Score=304.41 Aligned_cols=297 Identities=17% Similarity=0.176 Sum_probs=236.4
Q ss_pred cccCCCCCCCeEEEEE-----cC-CCCEEEEEc-CCcEEEEEcCCCe-----eEEEeecccCcceeEEEEeeeCCeEEEe
Q 014007 78 ESTSSSPPPTLLHISF-----NQ-DHGCFAAGT-DHGFRIYNCDPFR-----EIFRRDFERGGGIGVVEMLFRCNILALV 145 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~-----s~-~~~~l~~~~-~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (432)
...+.+|.+.|++++| ++ ++++|++|+ |+.|+||++...+ ......+. +|...|.+++|++++.+++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEE
Confidence 3567889999999999 76 899999998 5559999986542 12234555 7899999999999999999
Q ss_pred cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe---eccCCcc
Q 014007 146 GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE---TIANPKG 218 (432)
Q Consensus 146 s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~---~~~~~~~ 218 (432)
+++.| ++|++||+.+++.+..+. |...|.+++|+|++.++++ |++|++||+... ...... .|...+.
T Consensus 93 s~s~D-----~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 93 SSSWD-----KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp EEETT-----SEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred EEcCC-----CcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 99999 999999999999999888 9999999999999998884 899999999743 333332 5677888
Q ss_pred eEEEecCCCc--------EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-
Q 014007 219 LCAVSQGVGS--------LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL- 289 (432)
Q Consensus 219 ~~~~~~~~~~--------~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~- 289 (432)
+++|+|++.. .++++ ++.|+.|++||........+.+|...|.+++|+|+|++|++|+.|+. |++||+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFAS-VGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEE-EETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEE-EcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCC
Confidence 9999998731 23444 44899999999766667778899999999999999999999999999 9999994
Q ss_pred CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC--CCCCCCCCCCCCCCCCceeEeeccccee
Q 014007 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA--RSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (432)
.......+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+...
T Consensus 245 ~~~~~~~~~---~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~----------------------- 297 (343)
T 2xzm_R 245 LTYPQREFD---AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE----------------------- 297 (343)
T ss_dssp CSSCSEEEE---CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC-----------------------
T ss_pred Ccccceeec---CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC-----------------------
Confidence 444555554 34579999999999988755 57889999998876432 10000
Q ss_pred ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.........+|...|.+++|+|+|++|++|+.||.|++|+++.
T Consensus 298 -~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 298 -PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp -SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred -cchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 0000011235777899999999999999999999999999853
No 14
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.2e-39 Score=298.53 Aligned_cols=305 Identities=30% Similarity=0.491 Sum_probs=238.9
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
....|...|++++|+|||++|++|++++++||++++.+....... +...+..+.+..+..+++ ++.+ ++|+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~d-----~~v~ 84 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFV-TGVK-----EVVH 84 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEE-CSST-----TEEE
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEE-ECCc-----cEEE
Confidence 347799999999999999999999999999999988766644333 234455555555544444 4445 8999
Q ss_pred EEeCCCCceeEEeecCCceEEEEEecCccEEEeCCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEEEee-cCC
Q 014007 160 IWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCP-GLQ 237 (432)
Q Consensus 160 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~ 237 (432)
+||+.+++.+..+.+...|.+++++++...++.++.|++||+.++ +.+..+.. +...+++++ .. ++++ |..
T Consensus 85 iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~--la~~sg~~ 157 (355)
T 3vu4_A 85 IWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GL--LVYSNEFN 157 (355)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TE--EEEEESSC
T ss_pred EEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cE--EEEeCCCc
Confidence 999999999999998899999999999888889999999999988 77666654 445677777 33 3333 679
Q ss_pred CCcEEEEEccCCc-----------------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC
Q 014007 238 KGQVRVEHYASKR-----------------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG 300 (432)
Q Consensus 238 d~~i~i~d~~~~~-----------------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~ 300 (432)
+|.|++||++... ...+.+|...|.+++|+|+|++|++|+.|++.|++||+++++++..+..+
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g 237 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRG 237 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECT
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcC
Confidence 9999999999754 67788999999999999999999999999933999999999999999843
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee-cccceeecceeeEEEEec
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG-VLPKYFSSEWSVAQFRLV 379 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 379 (432)
.|...|.+++|+|+|++|++++.|++|+|||++.....+.. .+.. .++.++...|.+..+..+
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH----------------ALKGWINMKYFQSEWSLCNFKLS 301 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE----------------ETTTTEECCCCCCSSCSEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc----------------cccceeeccccccccceeEEEec
Confidence 36789999999999999999999999999999876422111 0000 345566666766666654
Q ss_pred CC---CceEEEEccCCCEEEEEecCCeEEEEEecCCCCCc
Q 014007 380 EG---SPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGE 416 (432)
Q Consensus 380 ~~---~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~ 416 (432)
.. ....++|++|++.|++++.||.+++|++......+
T Consensus 302 ~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 302 VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence 43 34789999999999999999999999997754443
No 15
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.2e-40 Score=323.21 Aligned_cols=325 Identities=13% Similarity=0.162 Sum_probs=244.4
Q ss_pred CcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 77 AESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 77 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
......+|...|++++|+|+|++||+|+ |+.|+|||+.+.+......+. +|...|.+++|+|++..+++++.+. ...
T Consensus 51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~-~~~ 128 (611)
T 1nr0_A 51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGR-ERF 128 (611)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCS-SCS
T ss_pred cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEECCC-Cce
Confidence 3456678999999999999999999998 555999999765544445555 6888999999999999888766430 001
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccE-EEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
+.|++|| .++.+..+. |...|.+++|+|++.+ +++ |++|++||..+++.+..+..|...|.+++|+|+++.+
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~l- 205 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLF- 205 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEE-
T ss_pred eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEE-
Confidence 4677777 566667777 9999999999999863 553 8999999999999999999999999999999998844
Q ss_pred EEeecCCCCcEEEEEccCCce-eeee-------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe---
Q 014007 231 LVCPGLQKGQVRVEHYASKRT-KFIM-------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR--- 299 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~-~~~~-------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~--- 299 (432)
++ ++.|+.|++||+.++.. ..+. +|...|.+++|+|+|++|++++.|++ |++||+.+++++..+..
T Consensus 206 -as-~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 206 -AS-TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp -EE-EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSS
T ss_pred -EE-EECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCC
Confidence 43 34899999999887543 3342 79999999999999999999999999 99999998887665531
Q ss_pred --------------------------------------CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007 300 --------------------------------------GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARS 341 (432)
Q Consensus 300 --------------------------------------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 341 (432)
..|...|++++|+|+|++|++++.|++|++||+.+++.....
T Consensus 283 ~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 283 IEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF 362 (611)
T ss_dssp GGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred ccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence 136788999999999999999999999999999987654332
Q ss_pred -CCCCCCCC---CCCCCC---------ceeEee-----------------------ccc-------------ceeeccee
Q 014007 342 -EPRSTSDP---TLPTSS---------LSFIKG-----------------------VLP-------------KYFSSEWS 372 (432)
Q Consensus 342 -~~~~~~~~---~~~~~~---------~~~~~~-----------------------~~~-------------~~~~~~~~ 372 (432)
..|...+. ..++.. +.++.. ..+ ..+... .
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~-~ 441 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG-K 441 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT-E
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC-c
Confidence 11111110 000000 000000 000 000001 1
Q ss_pred eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+. |...+.+++|+|||++|++|+.||.|++|+++.
T Consensus 442 ~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~ 479 (611)
T 1nr0_A 442 LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479 (611)
T ss_dssp EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET
T ss_pred eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC
Confidence 22222 566789999999999999999999999999864
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.5e-40 Score=322.96 Aligned_cols=287 Identities=15% Similarity=0.209 Sum_probs=233.4
Q ss_pred ccCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..+.+|...|++++|+|++. .|++|+ |+.|++|+..+.+.. ..+. +|...|.+++|+|++..+++++.| +
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~--~~l~-~H~~~V~~v~fspdg~~las~s~D-----~ 212 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK--STFG-EHTKFVHSVRYNPDGSLFASTGGD-----G 212 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe--eeec-cccCceEEEEECCCCCEEEEEECC-----C
Confidence 45678999999999999987 588887 555999998776554 5565 799999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEe--------ecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE---------------
Q 014007 157 KVMIWDDHQSRCIGEL--------SFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI--------------- 210 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~--------------- 210 (432)
+|++||+.+++.+..+ .|.+.|.+++|+|++.++++ |++|++||+.+++.+..+
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 9999999999888777 48899999999999998884 899999999887665433
Q ss_pred ----------------------------eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee--------
Q 014007 211 ----------------------------ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-------- 254 (432)
Q Consensus 211 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-------- 254 (432)
.+|...+..++|+|+++.++ + ++.|+.|++||+.++.....
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~--s-~s~D~~v~~Wd~~~~~~~~~~~~~h~~~ 369 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF--S-ADAEGHINSWDISTGISNRVFPDVHATM 369 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE--E-EETTSCEEEEETTTCCEEECSSCSCSSC
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE--E-EeCCCcEEEEECCCCceeeecccCCcce
Confidence 35677888999999998554 3 34899999999875322110
Q ss_pred ---------------------------------------------------------------------------eccCC
Q 014007 255 ---------------------------------------------------------------------------MAHDS 259 (432)
Q Consensus 255 ---------------------------------------------------------------------------~~~~~ 259 (432)
..|..
T Consensus 370 v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~ 449 (611)
T 1nr0_A 370 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 449 (611)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSS
T ss_pred EEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCC
Confidence 01234
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCC
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGS 338 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~ 338 (432)
.+.+++|+|+|++|++|+.|+. |++||+.+++...... ..|...|++++|+|||++|++++.|++|++||+.+ ++..
T Consensus 450 ~v~~va~spdg~~lasgs~D~~-v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 450 NSSCVALSNDKQFVAVGGQDSK-VHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp CEEEEEECTTSCEEEEEETTSE-EEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred CceEEEEeCCCCEEEEeCCCCe-EEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee
Confidence 5789999999999999999999 9999998765422111 12778999999999999999999999999999987 4321
Q ss_pred CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.. ..+..|.+.|++++|+|||++|++|+.||+|++|+++.
T Consensus 528 ~~---------------------------------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 528 HT---------------------------------NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp CC---------------------------------CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred ee---------------------------------eeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 10 01224888999999999999999999999999999864
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=297.83 Aligned_cols=286 Identities=13% Similarity=0.183 Sum_probs=248.3
Q ss_pred CCcccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
.....+.+|.+.|++++|+|++++|++|+ ++.|++|++.+++.. ..+. +|...|.+++|++++..+++++.|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~~~d---- 95 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--GTLD-GHTGTIWSIDVDCFTKYCVTGSAD---- 95 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT----
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhh--hhhh-hcCCcEEEEEEcCCCCEEEEEeCC----
Confidence 34466788999999999999999999998 455999999887765 4554 688999999999999999999998
Q ss_pred CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C-----CeEEEEEcCCCe-----------eeEEEeeccC
Q 014007 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E-----QKIFVYNFADLK-----------LLHQIETIAN 215 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d-----~~i~i~d~~~~~-----------~~~~~~~~~~ 215 (432)
+.|++||+.+++.+..+.+...+.+++|+|++.+++. + +.|++||+.... ....+..+..
T Consensus 96 -g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 3zwl_B 96 -YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG 174 (369)
T ss_dssp -TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred -CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence 9999999999999999999999999999999998884 5 899999987653 2334444444
Q ss_pred --CcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC
Q 014007 216 --PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG 291 (432)
Q Consensus 216 --~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~ 291 (432)
.+..++|+|+++.++. ++.||.|++||++. .....+..|...|.+++|+|++++|++++.|+. |++||++++
T Consensus 175 ~~~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~ 250 (369)
T 3zwl_B 175 LDAATVAGWSTKGKYIIA---GHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTL 250 (369)
T ss_dssp CCCEEEEEECGGGCEEEE---EETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTC
T ss_pred ccceeEEEEcCCCCEEEE---EcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCC
Confidence 7888999999886543 34799999999997 445667889999999999999999999999999 999999999
Q ss_pred ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC--------------eEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--------------TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS 357 (432)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
+.+..+. +...+..++|+|+++++++++.++ .+++||+.+++.
T Consensus 251 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-------------------- 307 (369)
T 3zwl_B 251 QVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE-------------------- 307 (369)
T ss_dssp CEEEEEE---CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE--------------------
T ss_pred ceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc--------------------
Confidence 9999988 558899999999999999999888 788888877652
Q ss_pred eEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 358 FIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+..|.+.|.+++|+|++++|++++.||.|++|+++.
T Consensus 308 ---------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 308 ---------------IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ---------------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ---------------hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 446788999999999999999999999999999999965
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-40 Score=297.97 Aligned_cols=287 Identities=13% Similarity=0.177 Sum_probs=224.7
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeec-ccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
..+.+|.+.|++++|+|+ +|++|+ |+.|+||++..........+ ..+|...|.+++|+|++..+++++.| +
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D-----~ 80 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD-----S 80 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT-----S
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC-----C
Confidence 456789999999999998 888887 55699999976543333444 22488999999999999999999999 9
Q ss_pred eEEEEeCCC-------CceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC----CeeeEEEeeccCCcceEE
Q 014007 157 KVMIWDDHQ-------SRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD----LKLLHQIETIANPKGLCA 221 (432)
Q Consensus 157 ~v~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~ 221 (432)
+|++||+.. .+.+..+. |...|.+++|+|++.++++ |++|++||++. .+++..+..|...+..++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 999999853 34566666 9999999999999998884 89999999943 256777888999999999
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcCC--CCEEEEEcCCCceEEEEECCCC-----
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQD--GQLLATSSTKGTLVRIFNTLDG----- 291 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~----- 291 (432)
|+|++..+ ++ ++.|+.|++||.... .+..+.+|...|.+++|+|+ +.+|++|+.|++ |++||+..+
T Consensus 161 ~~p~~~~l--~s-~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 161 WHPSEALL--AS-SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQ 236 (330)
T ss_dssp ECSSSSEE--EE-EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSC
T ss_pred ECCCCCEE--EE-EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcccc
Confidence 99998744 43 448999999998764 45678899999999999998 778999999999 999998754
Q ss_pred ---ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007 292 ---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368 (432)
Q Consensus 292 ---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (432)
.+...+.. .|...|.+++|++++ +|++++.||.|+|||..+++..
T Consensus 237 ~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~------------------------------ 284 (330)
T 2hes_X 237 QEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWK------------------------------ 284 (330)
T ss_dssp EEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEE------------------------------
T ss_pred ceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceE------------------------------
Confidence 23333332 267899999999765 7899999999999999765310
Q ss_pred cceeeE-EEEecCC-CceEEEEcc--CCCEEEEEecCCeEEEEEecC
Q 014007 369 SEWSVA-QFRLVEG-SPYIVAFGH--QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 369 ~~~~~~-~~~~~~~-~v~~~~~s~--~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+. ....|.. .|++++|+| ++++|++|+.||.|+||+++.
T Consensus 285 ---~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 285 ---VFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---EEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ---EEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 011 1235665 799999999 789999999999999999753
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-39 Score=318.34 Aligned_cols=276 Identities=20% Similarity=0.292 Sum_probs=243.4
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
....+|...|.+++|+|++++|++++++ .|++|+.+.... ..+. +|...+.+++|++++..+++++.| +.
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~---~~~~-~~~~~v~~~~~s~~g~~l~~~~~d-----g~ 367 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLT-GHSSSVWGVAFSPDGQTIASASDD-----KT 367 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SE
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCee---EEEe-CCCCCEEEEEECCCCCEEEEEeCC-----CE
Confidence 4567899999999999999999998854 599999875543 2343 688899999999999999999998 99
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
|++||. +++.+..+. |...|.+++|+|++.++++ |+.|++||. +++.+..+..|...+..++|+|+++.++.
T Consensus 368 v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-- 443 (577)
T 2ymu_A 368 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIAS-- 443 (577)
T ss_dssp EEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEE--
T ss_pred EEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEE--
Confidence 999994 677777777 8999999999999998884 889999995 67888889999999999999999885543
Q ss_pred ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 234 PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
++.|+.|++||.....+..+.+|...|.+++|+|++++|++++.|+. |++|| .+++++..+.+ |...|++++|+|
T Consensus 444 -~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~-~~~~~~~~~~~--h~~~v~~l~~s~ 518 (577)
T 2ymu_A 444 -ASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWN-RNGQLLQTLTG--HSSSVRGVAFSP 518 (577)
T ss_dssp -EETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEE-TTSCEEEEEEC--CSSCEEEEEECT
T ss_pred -EcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEc-CCCCEEEEEeC--CCCCEEEEEEcC
Confidence 33799999999988888889999999999999999999999999999 99999 57889988885 668999999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC
Q 014007 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN 393 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 393 (432)
+|++|++++.||.|+|||.. ++. +..+.+|.+.|++++|+|||+
T Consensus 519 dg~~l~s~~~dg~v~lwd~~-~~~-----------------------------------~~~~~~h~~~v~~~~fs~dg~ 562 (577)
T 2ymu_A 519 DGQTIASASDDKTVKLWNRN-GQL-----------------------------------LQTLTGHSSSVWGVAFSPDGQ 562 (577)
T ss_dssp TSSCEEEEETTSEEEEECTT-SCE-----------------------------------EEEEECCSSCEEEEEECTTSS
T ss_pred CCCEEEEEECcCEEEEEeCC-CCE-----------------------------------EEEEcCCCCCEEEEEEcCCCC
Confidence 99999999999999999963 331 557889999999999999999
Q ss_pred EEEEEecCCeEEEEE
Q 014007 394 TVVILGMDGSFYRCQ 408 (432)
Q Consensus 394 ~l~~~~~dg~v~iw~ 408 (432)
+|++++.||.|++|+
T Consensus 563 ~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 563 TIASASSDKTVKLWN 577 (577)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEeCCCEEEEeC
Confidence 999999999999996
No 20
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.1e-39 Score=294.05 Aligned_cols=295 Identities=16% Similarity=0.163 Sum_probs=241.3
Q ss_pred ccCCCCCCCeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~-~~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
.++.+|.+.|++|+|+|+ +++|++|+ |+.|+|||+...+. .....+. +|...|.++.|++++..+++++.|
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d--- 107 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWD--- 107 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEccc---
Confidence 457899999999999998 57999988 55699999976442 2334555 789999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee-EEEeeccCCcceEEEecCCCc
Q 014007 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 228 (432)
+.|++|+........... +...+..+.+++++.++++ |+.+++||+...... .....+...+..+++++++..
T Consensus 108 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 108 --GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred --ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 999999999888777777 7888899999999888773 899999998765443 334567788889999999877
Q ss_pred EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
.++++ ++.|+.|++||++... ...+.+|...|++++|+|++++|++|+.|+. |++||+++.+.+..+. +...+.
T Consensus 186 ~~~~s-~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~ 260 (340)
T 4aow_A 186 PIIVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLD---GGDIIN 260 (340)
T ss_dssp CEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEE---CSSCEE
T ss_pred cEEEE-EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeec---CCceEE
Confidence 76665 4489999999999854 4567789999999999999999999999999 9999999999999888 346899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
+++|+|++.++ +++.|+.|++||+++...+... ...........|...|++++
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~--------------------------~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDEL--------------------------KQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTEEEEEE--------------------------CCC-------CCCCCEEEEE
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCeEEEec--------------------------cccceeeeccCCCCCEEEEE
Confidence 99999988765 5557999999999876532111 01111224567888999999
Q ss_pred EccCCCEEEEEecCCeEEEEEecC
Q 014007 388 FGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 388 ~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
|+|||++|++|+.||.|+||++..
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCC
Confidence 999999999999999999999854
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.8e-39 Score=290.85 Aligned_cols=280 Identities=12% Similarity=0.132 Sum_probs=239.9
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeE---EEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREI---FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
...|...|++++|+|++++|++++++.|++|++.+.+.. ..... .+|...+.++.|++++..+++++.| +.
T Consensus 47 ~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d-----~~ 120 (337)
T 1gxr_A 47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDC-LNRDNYIRSCKLLPDGCTLIVGGEA-----ST 120 (337)
T ss_dssp EECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEEC-SCTTSBEEEEEECTTSSEEEEEESS-----SE
T ss_pred eccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccc-cCCCCcEEEEEEcCCCCEEEEEcCC-----Cc
Confidence 346999999999999999999999666999999765432 11111 1578899999999999999999988 99
Q ss_pred EEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 158 VMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 158 v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
|++||+.+++ ....+. |...|.+++|+|++.++++ |+.|++||+++++.+..+..|...+..++|+|+++.++.
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999999887 455555 8889999999999988773 899999999999999999889999999999999875543
Q ss_pred EeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
++.|+.|++||+++........+...+.+++|+|++++|++++.++. |++||+++++.. .+. .|...|.+++|
T Consensus 201 ---~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~--~~~~~v~~~~~ 273 (337)
T 1gxr_A 201 ---GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLH--LHESCVLSLKF 273 (337)
T ss_dssp ---EETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EEC--CCSSCEEEEEE
T ss_pred ---EecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEc--CCccceeEEEE
Confidence 23799999999998776666678899999999999999999999999 999999988765 333 37789999999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 391 (432)
+|++++|++++.||.|++||+.+++. .....|...|.+++|+|+
T Consensus 274 ~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------------------~~~~~~~~~v~~~~~s~~ 317 (337)
T 1gxr_A 274 AYCGKWFVSTGKDNLLNAWRTPYGAS------------------------------------IFQSKESSSVLSCDISVD 317 (337)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTCCE------------------------------------EEEEECSSCEEEEEECTT
T ss_pred CCCCCEEEEecCCCcEEEEECCCCeE------------------------------------EEEecCCCcEEEEEECCC
Confidence 99999999999999999999998762 123457788999999999
Q ss_pred CCEEEEEecCCeEEEEEe
Q 014007 392 KNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 392 ~~~l~~~~~dg~v~iw~~ 409 (432)
+++|++++.||.|++|++
T Consensus 318 ~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 318 DKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEETTSCEEEEEE
T ss_pred CCEEEEecCCCeEEEEEE
Confidence 999999999999999997
No 22
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-38 Score=283.78 Aligned_cols=244 Identities=14% Similarity=0.191 Sum_probs=217.7
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
+.+. +|...|.+++|+|++..+++++.| |.|++||+.+++.+..+. |..+|.+++|++++.++++ |+.|+
T Consensus 7 ~~~~-~h~~~V~~~~fsp~~~~l~s~~~d-----g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 7 KTFS-NRSDRVKGIDFHPTEPWVLTTLYS-----GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp EEEE-EECSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred Eeec-CCCCceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 4555 788999999999999999999999 999999999999999988 8899999999999998884 89999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEEEEcC-CCCEEE
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACFALTQ-DGQLLA 274 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~sp-~~~~l~ 274 (432)
+||+.+++.+..+..|...+..++|+|+++.+ ++ |+.|+.|++||++.+ ....+.+|...|.+++|+| ++.+|+
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~s-gs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYV--LS-GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEE--EE-EETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEE--EE-ECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 99999999999999999999999999998754 33 458999999999875 2356789999999999999 678999
Q ss_pred EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC--CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS--NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
+|+.|+. |++||+++++....+..+ +...+..+.|+| ++++|++++.|++|++||+++++.
T Consensus 158 sgs~D~~-v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~--------------- 220 (304)
T 2ynn_A 158 SGCLDRT-VKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC--------------- 220 (304)
T ss_dssp EEETTSE-EEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEE---------------
T ss_pred EEeCCCe-EEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCcc---------------
Confidence 9999999 999999988887777654 557899999987 788999999999999999988752
Q ss_pred CCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|.+.|..++|+|++++|++|+.||.|++|++..
T Consensus 221 --------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 221 --------------------VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp --------------------EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred --------------------ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 456889999999999999999999999999999999744
No 23
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-38 Score=291.31 Aligned_cols=283 Identities=12% Similarity=0.118 Sum_probs=233.2
Q ss_pred ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~ 155 (432)
....+|...|++++|+|++ ++|++|+ |+.|+||++.+.+........ +|...|.+++|++ ++..+++++.|
T Consensus 67 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d----- 140 (383)
T 3ei3_B 67 RTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM-GPGDAITGMKFNQFNTNQLFVSSIR----- 140 (383)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC-STTCBEEEEEEETTEEEEEEEEETT-----
T ss_pred EeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC-CcCCceeEEEeCCCCCCEEEEEeCC-----
Confidence 4567899999999999999 8999998 555999999877766444443 6899999999999 78999999998
Q ss_pred CeEEEEeCCCCceeEEee----cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
+.|++||+.. ..+..+. +...|.+++|+|++.++++ |+.|++||+ +++.+..+..|...+..++|+|+++.
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTT
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCC
Confidence 9999999985 4455554 3478999999999998884 899999999 57888889999999999999999985
Q ss_pred EEEEeecCCCCcEEEEEccC----CceeeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC-
Q 014007 229 LVLVCPGLQKGQVRVEHYAS----KRTKFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD- 302 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~- 302 (432)
+++. ++.|+.|++||++. .......+|...|.+++|+| ++++|++++.|+. |++||+++++.+..+..+.+
T Consensus 219 ~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~ 295 (383)
T 3ei3_B 219 LMAT--SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPHR 295 (383)
T ss_dssp EEEE--EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCBC
T ss_pred EEEE--EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCcccccccccccc
Confidence 4433 34799999999997 44444458999999999999 9999999999999 99999999988777775321
Q ss_pred ----c----------CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007 303 ----R----------AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368 (432)
Q Consensus 303 ----~----------~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (432)
. ..+..++|+|++++ +++.||.|++||+.+++.
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~------------------------------- 342 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL------------------------------- 342 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE-------------------------------
T ss_pred ccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce-------------------------------
Confidence 1 23445667777766 677899999999998773
Q ss_pred cceeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 369 SEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 369 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+..+.+ |.+.+..++|+|++++|++|+ ||.|+||+++
T Consensus 343 ----~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~ 381 (383)
T 3ei3_B 343 ----VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRE 381 (383)
T ss_dssp ----EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC
T ss_pred ----eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecC
Confidence 334554 457788889999999999997 9999999985
No 24
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-37 Score=303.27 Aligned_cols=288 Identities=19% Similarity=0.260 Sum_probs=246.0
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|...|++++|+|++++|++++. +.|++|+.+.. .. ..+. +|...+.+++|+|++..+++++.| +
T Consensus 255 ~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~-~~--~~~~-~h~~~v~~~~~~~~~~~l~t~~~d-----~ 325 (577)
T 2ymu_A 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ-LL--QTLT-GHSSSVWGVAFSPDGQTIASASDD-----K 325 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-EE--EEEe-cCCCCeEEEEECCCCCEEEEEeCC-----C
Confidence 3456789999999999999999999884 45999997543 22 3454 688999999999999999999998 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.|++||.... .+..+. |...|.+++|+|++.++++ |+.|++||. +++.+..+..|...+..++|+|+++.++.
T Consensus 326 ~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~- 402 (577)
T 2ymu_A 326 TVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS- 402 (577)
T ss_dssp CEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEE-
T ss_pred eEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEE-
Confidence 9999997654 455555 8999999999999998884 889999995 67888889999999999999999986643
Q ss_pred eecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 233 CPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
++.|+.|++||.....+..+.+|...|++++|+|++++|++++.|+. |++||. +++.+..+.. |...|.+++|+
T Consensus 403 --~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~s 476 (577)
T 2ymu_A 403 --ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFS 476 (577)
T ss_dssp --EETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEEC
T ss_pred --EeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEc
Confidence 34799999999887888889999999999999999999999999999 999995 6778888875 66899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
|++++|++++.|+.|++||.. ++. +..+.+|.+.|++++|+||+
T Consensus 477 pd~~~las~~~d~~i~iw~~~-~~~-----------------------------------~~~~~~h~~~v~~l~~s~dg 520 (577)
T 2ymu_A 477 PDGQTIASASDDKTVKLWNRN-GQL-----------------------------------LQTLTGHSSSVRGVAFSPDG 520 (577)
T ss_dssp TTSCEEEEEETTSEEEEEETT-SCE-----------------------------------EEEEECCSSCEEEEEECTTS
T ss_pred CCCCEEEEEeCCCEEEEEcCC-CCE-----------------------------------EEEEeCCCCCEEEEEEcCCC
Confidence 999999999999999999953 331 45678899999999999999
Q ss_pred CEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 393 NTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
++|++++.||.|++|+. +++.+..+..
T Consensus 521 ~~l~s~~~dg~v~lwd~---~~~~~~~~~~ 547 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR---NGQLLQTLTG 547 (577)
T ss_dssp SCEEEEETTSEEEEECT---TSCEEEEEEC
T ss_pred CEEEEEECcCEEEEEeC---CCCEEEEEcC
Confidence 99999999999999985 3444444443
No 25
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=292.05 Aligned_cols=306 Identities=9% Similarity=0.121 Sum_probs=240.5
Q ss_pred ccCCCCCCCeEEEEEcCCCCEE-EEEc----CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC---eEEEecCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCF-AAGT----DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPD 150 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l-~~~~----~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d 150 (432)
....+|...|++++|+|++..| ++|+ |+.|+||++.+.+......+ +|...|.++.|+++ +..+++++.|
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI--EKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE--EESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee--cccCcEEEEEEcCCCCCCceEEEecCC
Confidence 4456799999999999999655 5554 34499999998776644444 48889999999998 6889999988
Q ss_pred CCCCCCeEEEEeCCCCc-eeEEee-cCCceEEEEE------ecCccEEEe---CCeEEEEEcCCCe-eeEEEeeccC---
Q 014007 151 PQYPLNKVMIWDDHQSR-CIGELS-FRSEVRSVKL------RRDRIIVVL---EQKIFVYNFADLK-LLHQIETIAN--- 215 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~~-~~~~~~-~~~~v~~~~~------~~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~--- 215 (432)
+.|++||+.+++ .+..+. |...|.++.| ++++.++++ |+.|++||+++++ .+..+..+..
T Consensus 90 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 164 (357)
T 3i2n_A 90 -----GNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENK 164 (357)
T ss_dssp -----SCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCC
T ss_pred -----CeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCC
Confidence 999999999987 788887 9999999965 678888774 8999999999876 6777765544
Q ss_pred -CcceEE----EecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC---CCCEEEEEcCCCceEEEEE
Q 014007 216 -PKGLCA----VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ---DGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 216 -~~~~~~----~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp---~~~~l~~~~~dg~~i~vwd 287 (432)
.+..++ |+++++.++. ++.|+.|++||+++........|...|.+++|+| ++.+|++++.|+. |++||
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~---~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d 240 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCA---GYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFD 240 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEE---EETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEE
T ss_pred CceEEEEEEeccCCCCCEEEE---EccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEe
Confidence 566666 5677775433 3478999999999988877788999999999999 9999999999999 99999
Q ss_pred CCCCceEEEEE---eCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 288 TLDGTLLQEVR---RGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 288 ~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
+++++.+..+. ...|...|.+++|+|+++ +|++++.||.|++||+++..............
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~--------------- 305 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM--------------- 305 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC---------------
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc---------------
Confidence 98876554443 113678999999999998 89999999999999999876432221100000
Q ss_pred cceeecceeeEEEEecCCCceEEEEccCCCEEE-EEecCCeEEEEEecC
Q 014007 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVV-ILGMDGSFYRCQFDP 411 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~v~iw~~~~ 411 (432)
........+..+..|.+.|++++|+|++++|+ +++.||.|++|++..
T Consensus 306 -~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 306 -GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp -CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred -ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 00011123567888999999999999999998 899999999999843
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-38 Score=315.02 Aligned_cols=304 Identities=15% Similarity=0.173 Sum_probs=235.9
Q ss_pred ccCCCCCCCeEEEEEcCCC-CEEEEEc-CCcEEEEEcCCCee---EEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDH-GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY 153 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~-~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~ 153 (432)
..+.+|.+.|++|+|+|++ .+|++|+ |+.|+||++..... .....+. +|...|.+++|++++..+++++.|
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~D--- 451 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWD--- 451 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT---
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCC---
Confidence 3567899999999999875 6888888 55599999865322 2234454 799999999999999999999999
Q ss_pred CCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE---eeccCCcceEEEecCC
Q 014007 154 PLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI---ETIANPKGLCAVSQGV 226 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~ 226 (432)
+.|++||+.+++.+..+. |...|.+++|+|++.++++ |++|++||+......... ..|...+.+++|+|++
T Consensus 452 --g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 452 --GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp --SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred --CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999999998888 9999999999999988874 899999998654433222 3467778999999998
Q ss_pred CcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
....+++ ++.|+.|++||++... ...+.+|...|.+++|+|+|++|++|+.|+. |++||+++++++..+. +...
T Consensus 530 ~~~~l~s-~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~---~~~~ 604 (694)
T 3dm0_A 530 LQPTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLE---ANSV 604 (694)
T ss_dssp SSCEEEE-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCB---CSSC
T ss_pred CcceEEE-EeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEec---CCCc
Confidence 5544554 4589999999998854 4567899999999999999999999999999 9999999999887776 4468
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
|.+++|+|++.+|++++ ++.|+|||+++++.+.....+........ .... ......+.-.+++
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~ 667 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA--------------DNSG--PAATKRKVIYCTS 667 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------------------------CCCCEEE
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccc--------------cccc--cccCCceeEEeee
Confidence 99999999999887775 56699999998764432211100000000 0000 0001112224788
Q ss_pred EEEccCCCEEEEEecCCeEEEEEec
Q 014007 386 VAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
++|+|||++|++|+.||.|+||++.
T Consensus 668 l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 668 LNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999999974
No 27
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.1e-38 Score=290.31 Aligned_cols=313 Identities=13% Similarity=0.083 Sum_probs=238.1
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...|.+.|++++|+|++++|++++ ++.|++|++++.+......+. +|...|.+++|++++..+++++.| +.|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~ 77 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTD-----RNAY 77 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETT-----SCEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCC-----CeEE
Confidence 345899999999999999999997 555999999887643445665 788999999999999999999998 9999
Q ss_pred EEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee---eEEE-eeccCCcceEEEecCCCcE
Q 014007 160 IWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL---LHQI-ETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 160 iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~ 229 (432)
+||+.+++....+. |...|.+++|+|++.++++ |+.|++||++.++. ...+ ..|...+..++|+|+++.+
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 99998887555443 8899999999999988884 89999999988652 2333 4567889999999998754
Q ss_pred EEEeecCCCCcEEEEEcc------------------C-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC
Q 014007 230 VLVCPGLQKGQVRVEHYA------------------S-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD 290 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~------------------~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~ 290 (432)
+. ++.|+.|++||++ . .....+..|...|.+++|+|++++|++++.|+. |++||+++
T Consensus 158 ~~---~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~ 233 (372)
T 1k8k_C 158 AA---GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADK 233 (372)
T ss_dssp EE---EETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGG
T ss_pred EE---EcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCC
Confidence 32 3479999999964 2 345566789999999999999999999999999 99999999
Q ss_pred CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC--CC--CCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV--NS--GSARSEPRSTSDPTLPTSSLSFIKGVLPKY 366 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (432)
++++..+.. |...|.+++|+|++++|+++ .|+.|++|++.+ ++ .+.....+....... ......+. ..
T Consensus 234 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~ 305 (372)
T 1k8k_C 234 KMAVATLAS--ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG-LTARERFQ----NL 305 (372)
T ss_dssp TTEEEEEEC--SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC---------CHHHHHH----HC
T ss_pred CceeEEEcc--CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh-cchhhhhh----hc
Confidence 999999985 56789999999999988888 899999999988 42 111111100000000 00000000 00
Q ss_pred eecceee------EEE-EecCCCceEEEEc-cCC---CEEEEEecCCeEEEEEecC
Q 014007 367 FSSEWSV------AQF-RLVEGSPYIVAFG-HQK---NTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 367 ~~~~~~~------~~~-~~~~~~v~~~~~s-~~~---~~l~~~~~dg~v~iw~~~~ 411 (432)
....... ..+ .+|.+.|++++|. ++| ++|++|+.||.|++|+++.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 306 DKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0000000 112 3788999999976 566 9999999999999999854
No 28
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.2e-38 Score=290.21 Aligned_cols=288 Identities=15% Similarity=0.197 Sum_probs=236.7
Q ss_pred ccCCCCCCCeEEEEEcCC---CC--EEEEEcCCcEEEEEcCCCeeEEEe-ecc-cCcceeEEEEeeeCC----eEEEecC
Q 014007 79 STSSSPPPTLLHISFNQD---HG--CFAAGTDHGFRIYNCDPFREIFRR-DFE-RGGGIGVVEMLFRCN----ILALVGG 147 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~---~~--~l~~~~~~~i~iw~~~~~~~~~~~-~~~-~~~~~~v~~~~~~~~----~~~~~s~ 147 (432)
....+|...|++++|+|+ +. ++++++++.|++|++.+.+..... ... ..+...+.+++|+++ +..++++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 456689999999999984 33 556666778999999866544221 111 136678999999998 7899999
Q ss_pred CCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEE---eeccCCcce
Q 014007 148 GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI---ETIANPKGL 219 (432)
Q Consensus 148 ~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~---~~~~~~~~~ 219 (432)
+.| +.|++||+.+++.+..+. |...|.+++|+| ++.++++ |+.|++||+++++.+..+ ..|...+..
T Consensus 92 ~~d-----g~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~ 166 (366)
T 3k26_A 92 GSR-----GIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS 166 (366)
T ss_dssp ETT-----CEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred cCC-----CEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence 998 999999999999999998 999999999999 8887774 899999999999988888 678889999
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCCcee-----------------------------eeeccCCceeEEEEcCCC
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-----------------------------FIMAHDSRIACFALTQDG 270 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-----------------------------~~~~~~~~i~~~~~sp~~ 270 (432)
++|+|+++.++. ++.|+.|++||++..... ....|...|.+++|+ +
T Consensus 167 ~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 167 ADYDLLGEKIMS---CGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEECTTSSEEEE---EETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred EEECCCCCEEEE---ecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 999999875543 337999999999874321 122399999999998 7
Q ss_pred CEEEEEcCCCceEEEEECCCCce--------------EEEEEeCCCcCceEEEEECCC--CCEEEEEeCCCeEEEEEecC
Q 014007 271 QLLATSSTKGTLVRIFNTLDGTL--------------LQEVRRGADRAEIYSLAFSSN--AQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 271 ~~l~~~~~dg~~i~vwd~~~~~~--------------~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~iwd~~~ 334 (432)
++|++++.|+. |++||+++++. +..+.. |...|.+++|+|+ +++|++++.||.|++||+.+
T Consensus 242 ~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 242 DLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred CEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 79999999999 99999988754 666664 6678999999999 99999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec--CCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV--EGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
++.... ....+..| .+.|++++|+|++++|++++.||.|++|++.
T Consensus 319 ~~~~~~-------------------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 319 EDPHKA-------------------------------KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSGGGC-------------------------------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCCccc-------------------------------cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 763211 13356666 6889999999999999999999999999973
No 29
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=7.4e-38 Score=291.35 Aligned_cols=286 Identities=11% Similarity=0.161 Sum_probs=236.2
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCe----eEEEeecccCcceeEEEEeeeCC----e---EEEe
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFR----EIFRRDFERGGGIGVVEMLFRCN----I---LALV 145 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~----~---~~~~ 145 (432)
...+.+|.+.|++++|+| ++|++|+ |+.|+||++.+.+ ......+. +|...|.++.|+++ + ..++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEE
Confidence 356788999999999999 6888887 5559999998776 11123444 68889999999999 8 8999
Q ss_pred cCCCCCCCCCCeEEEEeCCCCce-----eEEee-c-----CCceEEEEEe----cCccE-EEe---CCeEEEEEcCC---
Q 014007 146 GGGPDPQYPLNKVMIWDDHQSRC-----IGELS-F-----RSEVRSVKLR----RDRII-VVL---EQKIFVYNFAD--- 203 (432)
Q Consensus 146 s~~~d~~~~~~~v~iwd~~~~~~-----~~~~~-~-----~~~v~~~~~~----~~~~~-~~~---d~~i~i~d~~~--- 203 (432)
+++.| +.|++||+.+++. +..+. | ...|.+++|+ |++.+ +++ |+.|++||+++
T Consensus 86 s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 86 TTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 99988 9999999998886 77776 6 4899999999 99987 763 89999999998
Q ss_pred ---CeeeE-----EEee-------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeec---c---CCce
Q 014007 204 ---LKLLH-----QIET-------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMA---H---DSRI 261 (432)
Q Consensus 204 ---~~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~---~---~~~i 261 (432)
++.+. .+.. +...+.+++|+|++ . +++ ++.|+.|++||++.. .+..+.. | ...|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~--l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L--IAT-GFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E--EEE-ECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e--EEE-EeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 66665 6643 67889999999998 3 333 458999999999874 4456677 8 9999
Q ss_pred eEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEeCCCeE
Q 014007 262 ACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
.+++|+|++++|++++.| +. |++||+++++.+..+.... |...|.+++|+|++++|++++.||.|
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ceEEECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999999999999999 99 9999999999998887511 56899999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE------ec---------------CCCceEE
Q 014007 328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR------LV---------------EGSPYIV 386 (432)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~v~~~ 386 (432)
++||+.+++.+ ..+. .| ...|+++
T Consensus 316 ~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 316 RFWDVKTKERI-----------------------------------TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp EEEETTTTEEE-----------------------------------EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred EEEEcCCCcee-----------------------------------EEEecccCcccchhhhhccccccccccCCceeEE
Confidence 99999887632 2334 44 8899999
Q ss_pred EEccCC----------CEEEEEecCCeEEEEEecC
Q 014007 387 AFGHQK----------NTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 387 ~~s~~~----------~~l~~~~~dg~v~iw~~~~ 411 (432)
+|+|++ ++|++++.||.|++|+++.
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 999998 7999999999999999854
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=292.16 Aligned_cols=297 Identities=16% Similarity=0.195 Sum_probs=240.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
.|.+.|++++|+|++++|++|+.++ |++|+. +++.. ..+. .|...+.++.|++++..+++++.| +.|++|
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iw 176 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-TGALL--NVLN-FHRAPIVSVKWNKDGTHIISMDVE-----NVTILW 176 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEE--EEEC-CCCSCEEEEEECTTSSEEEEEETT-----CCEEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCee--eecc-CCCccEEEEEECCCCCEEEEEecC-----CeEEEE
Confidence 3788999999999999999998554 999994 34433 4454 688999999999999999999988 999999
Q ss_pred eCCCCceeEEee-cCCc---------------eEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007 162 DDHQSRCIGELS-FRSE---------------VRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 162 d~~~~~~~~~~~-~~~~---------------v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (432)
|+.+++.+..+. +... +.+++|++++.+++. ++.|++||+++++.+..+..|...+..++|+
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFN 256 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEE
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEEC
Confidence 999999888887 5555 999999999887773 8999999999999988898899999999999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~ 302 (432)
|+++.++. ++.|+.|++||++.. ....+..|...|.+++|+|++ +|++++.|+. |++||+++++.+..+.. |
T Consensus 257 ~~~~~l~~---~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~ 329 (425)
T 1r5m_A 257 DTNKLLLS---ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIV--D 329 (425)
T ss_dssp TTTTEEEE---EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEEC--T
T ss_pred CCCCEEEE---EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEeccc--C
Confidence 99885443 347999999999884 456677899999999999999 9999999999 99999999999988885 5
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-
Q 014007 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG- 381 (432)
Q Consensus 303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 381 (432)
...|.+++|+|++++|++++.||.|++||+.+++....... .... ..+. ......+..+..|..
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~---------~~~~----~~~~--~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY---------GNRD----GILN--PLPIPLYASYQSSQDN 394 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------CEECCEEEEECCTTCC
T ss_pred CccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeee---------cccc----cccC--cccchhhhhhcCcccC
Confidence 68999999999999999999999999999987652211000 0000 0000 000113556778866
Q ss_pred -CceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 382 -SPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 382 -~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
.|.+++|+|++++|++++.||.|++|+++
T Consensus 395 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 395 DYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CceEEEEccCCCceEEEEecCceEEEEeec
Confidence 89999999999999999999999999984
No 31
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.4e-37 Score=284.06 Aligned_cols=279 Identities=11% Similarity=0.066 Sum_probs=214.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcC--------CcEEEEEcCCCeeE--------EEeecccCcceeEEEEeeeCCeEEE----
Q 014007 85 PPTLLHISFNQDHGCFAAGTD--------HGFRIYNCDPFREI--------FRRDFERGGGIGVVEMLFRCNILAL---- 144 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~--------~~i~iw~~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~---- 144 (432)
..+|++++|+|||++|++|+. +.|++|+++..... ....+. ++...+.++.++.+..+.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~s~~~~~~~~~~g~~~ 92 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALE-DNDDSPTAIDASKGIILVGCNE 92 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECC-TTSCCCCEEEEETTEEEEECCC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEcc-CCCCceEEEEeCCCEEEEEECC
Confidence 357999999999999999862 23999998754321 112343 567778888887664432
Q ss_pred -----ecCCCCCCCCCCeEEEEeCCCCcee----EEee------cCCceEEEEEecCccEEE--e---CCeEEEEEcCCC
Q 014007 145 -----VGGGPDPQYPLNKVMIWDDHQSRCI----GELS------FRSEVRSVKLRRDRIIVV--L---EQKIFVYNFADL 204 (432)
Q Consensus 145 -----~s~~~d~~~~~~~v~iwd~~~~~~~----~~~~------~~~~v~~~~~~~~~~~~~--~---d~~i~i~d~~~~ 204 (432)
++++.| +.+++|++...... .... +...+..++|+|||++++ + |++|+|||++++
T Consensus 93 ~~~~l~s~~~d-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 93 NSTKITQGKGN-----KHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CHHHHHHTSCC-----CCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT
T ss_pred CccEEEEecCC-----CcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC
Confidence 344556 89999998765321 1111 234588999999999875 2 789999999999
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCC-
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG- 280 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg- 280 (432)
+.+..+. +...|..++|+|+++.++. + .++.+.+|+...+.. .....|...|.+++|+|+++++++++.|+
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~l~s---~-s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKVVAY---I-TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSEEEE---E-CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS
T ss_pred cEEEEeC-CCCceEEEEEccCCceEEe---c-cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc
Confidence 9988885 6778999999999985533 2 245677777666433 23457888999999999999999999887
Q ss_pred ---ceEEEEECCCCceE----EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 281 ---TLVRIFNTLDGTLL----QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 281 ---~~i~vwd~~~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
. +++||+...... ..+. .|...|++++|+|||++||+|+.|++|+|||+++++.
T Consensus 243 ~~~~-i~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~---------------- 303 (365)
T 4h5i_A 243 KGIV-LTKISIKSGNTSVLRSKQVT--NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSM---------------- 303 (365)
T ss_dssp CCEE-EEEEEEETTEEEEEEEEEEE--SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEE----------------
T ss_pred ceeE-Eeecccccceecceeeeeec--CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcE----------------
Confidence 5 888998776542 2333 3668999999999999999999999999999998763
Q ss_pred CCceeEeecccceeecceeeEE-EEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQ-FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+.. +.+|.+.|++|+|+|||++||+|+.|++|+||++...
T Consensus 304 -------------------~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 304 -------------------SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -------------------EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -------------------EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 223 3579999999999999999999999999999999654
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=277.03 Aligned_cols=240 Identities=16% Similarity=0.237 Sum_probs=215.9
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
.+.+|...|.+++|++++.++++++ |+.|++||+.+++.. ..+. .+...+..++|+|++..+++++.+ +.|
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~--~~~~-~~~~~~~~~~~spdg~~l~~g~~d-----g~v 146 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--KSID-AGPVDAWTLAFSPDSQYLATGTHV-----GKV 146 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCTTCCCCEEECTTSSEEEEECTT-----SEE
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEE--EEEe-CCCccEEEEEECCCCCEEEEEcCC-----CcE
Confidence 4678999999999999999999998 555999999988766 4444 567788899999999999999999 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
++||+.+++....+. +...|.+++|+|++.++++ |+.|++||+++++.+..+..|..++..++|+|+++.+ ++
T Consensus 147 ~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l--~s- 223 (321)
T 3ow8_A 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL--VT- 223 (321)
T ss_dssp EEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE--EE-
T ss_pred EEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE--EE-
Confidence 999999999888887 7889999999999999884 8999999999999999999999999999999998744 33
Q ss_pred cCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 235 GLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 235 g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
|+.|+.|++||++.. ....+.+|...|.+++|+|++++|++++.|+. |++||+++++++..+.. |...|.+++|+|
T Consensus 224 ~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~--h~~~v~~v~~s~ 300 (321)
T 3ow8_A 224 ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFD--HQDQVWGVKYNG 300 (321)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcC--CCCcEEEEEECC
Confidence 458999999999874 45567899999999999999999999999999 99999999999999875 668999999999
Q ss_pred CCCEEEEEeCCCeEEEEEec
Q 014007 314 NAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~ 333 (432)
++++|++++.||.|+|||..
T Consensus 301 ~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 301 NGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSSEEEEEETTCCEEEEECC
T ss_pred CCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999963
No 33
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-37 Score=288.71 Aligned_cols=248 Identities=14% Similarity=0.220 Sum_probs=222.0
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
+|...|.++.|+|++..+++++.| +.|++||+.+++.+..+. |...|.+++|+|++.++++ |++|++||+.
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~D-----g~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASED-----ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESS-----SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 799999999999999999999999 999999999999999998 9999999999999998884 8999999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGT 281 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 281 (432)
+++++..+..|...+.+++|+|+++.++ + |+.|+.|++||++++ .+..+.+|...|.++.|+|++.+|++|+.|+.
T Consensus 181 ~~~~~~~~~~h~~~V~~v~~~p~~~~l~--s-~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~ 257 (410)
T 1vyh_C 181 GFECIRTMHGHDHNVSSVSIMPNGDHIV--S-ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257 (410)
T ss_dssp SSCEEECCCCCSSCEEEEEECSSSSEEE--E-EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCceeEEEcCCCCCEEEEEEeCCCCEEE--E-EeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999999999988543 3 348999999999885 45678899999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEEeCCCcCceEEEEECCC--------------------CCEEEEEeCCCeEEEEEecCCCCCCCC
Q 014007 282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN--------------------AQWLAVSSDKGTVHVFNLKVNSGSARS 341 (432)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~~~~~~ 341 (432)
|++||++++++...+.. |...|.+++|+|+ |.+|++|+.|+.|++||+++++.
T Consensus 258 -v~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~---- 330 (410)
T 1vyh_C 258 -VRVWVVATKECKAELRE--HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC---- 330 (410)
T ss_dssp -EEEEETTTCCEEEEECC--CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE----
T ss_pred -EEEEECCCCceeeEecC--CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce----
Confidence 99999999999988875 6689999999996 67899999999999999988762
Q ss_pred CCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
+..+.+|.+.|.+++|+|++++|++|+.||.|++|++.. ++.+..+.
T Consensus 331 -------------------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~--~~~~~~~~ 377 (410)
T 1vyh_C 331 -------------------------------LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN--KRCMKTLN 377 (410)
T ss_dssp -------------------------------EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT--SCCCEEEE
T ss_pred -------------------------------EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CceEEEEc
Confidence 456788999999999999999999999999999998743 44444444
Q ss_pred e
Q 014007 422 Y 422 (432)
Q Consensus 422 ~ 422 (432)
.
T Consensus 378 ~ 378 (410)
T 1vyh_C 378 A 378 (410)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=296.73 Aligned_cols=316 Identities=13% Similarity=0.121 Sum_probs=240.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCC--eeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCe
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPF--REIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNK 157 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~ 157 (432)
..|...|++++|+|++++|++|+. +.|++|++... .......+. +|...|.++.|+++ +..+++++.| +.
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~ 137 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNN-----GE 137 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSS-----SC
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCC-----Ce
Confidence 358889999999999999999984 55999999761 111224554 68899999999998 8899999998 99
Q ss_pred EEEEeCCCCc------eeEEe---e-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeec------cCCc
Q 014007 158 VMIWDDHQSR------CIGEL---S-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETI------ANPK 217 (432)
Q Consensus 158 v~iwd~~~~~------~~~~~---~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~------~~~~ 217 (432)
|++||+.+++ ....+ . |...|.+++|+|+ +.++++ |+.|++||+++++.+..+..+ ...+
T Consensus 138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v 217 (416)
T 2pm9_A 138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL 217 (416)
T ss_dssp EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence 9999999876 33333 3 8889999999998 666663 899999999999998888776 6789
Q ss_pred ceEEEecCCCcEEEEeecCCCC---cEEEEEccCC--ceeeee-ccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCC
Q 014007 218 GLCAVSQGVGSLVLVCPGLQKG---QVRVEHYASK--RTKFIM-AHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLD 290 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~~~~--~~~~~~-~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~ 290 (432)
..++|+|++..+++++ +.|+ .|++||++.. ....+. +|...|.+++|+| ++++|++++.|+. |++||+++
T Consensus 218 ~~~~~~~~~~~~l~~~--~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~ 294 (416)
T 2pm9_A 218 SVVEWHPKNSTRVATA--TGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES 294 (416)
T ss_dssp EEEEECSSCTTEEEEE--ECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS
T ss_pred EEEEECCCCCCEEEEE--ECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC
Confidence 9999999986654433 3677 9999999983 456667 8999999999999 9999999999999 99999999
Q ss_pred CceEEEEEeCCCcCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee-c--ccce
Q 014007 291 GTLLQEVRRGADRAEIYSLAFSSNA-QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG-V--LPKY 366 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~ 366 (432)
++++..+.. |...|.+++|+|++ .+|++++.||.|++||+.+.+............. .....++.. . ....
T Consensus 295 ~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 369 (416)
T 2pm9_A 295 AEQLSQFPA--RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQ---ESETDFWNNVSREESKE 369 (416)
T ss_dssp CCEEEEEEC--SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------------CCS
T ss_pred CccceeecC--CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccccccccc---CCccccccccccccccc
Confidence 999999985 56899999999999 8999999999999999998775443211000000 000000000 0 0000
Q ss_pred eecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 367 FSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
......+.....|...+.+++|+|||++|++++.||.|+||++..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 000000011123566788999999999999999999999999864
No 35
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=281.67 Aligned_cols=242 Identities=13% Similarity=0.131 Sum_probs=199.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEe--ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRR--DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
.|...|++++|+|++.+++++.|+.|+|||+++++..... .+. +|...|.+++|++++..+++++.| ++|++
T Consensus 80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~-~H~~~V~~v~~spdg~~l~sgs~d-----~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKY-EHDDIVSTVSVLSSGTQAVSGSKD-----ICIKV 153 (344)
T ss_dssp EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETT-----SCEEE
T ss_pred ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeecccc-CCCCCEEEEEECCCCCEEEEEeCC-----CeEEE
Confidence 3567899999999976554444666999999887654322 232 689999999999999999999999 99999
Q ss_pred EeCCCCceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecCCCcEEEEe
Q 014007 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 233 (432)
||+.+++++..+. |...|.+++|++++. ++++ |++|++||+++++....+.. +...+.+++|+|++..+++ +
T Consensus 154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~-s 232 (344)
T 4gqb_B 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV-F 232 (344)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE-E
T ss_pred EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE-E
Confidence 9999999999998 999999999999874 4442 89999999999988777643 4456778999998776543 3
Q ss_pred ecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 234 PGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
|+.|+.|++||+++ ..+..+.+|...|++++|+|++ ++|++|+.|++ |+|||+.+++++. +. .|...|++++|
T Consensus 233 -g~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~-~~--~H~~~V~~v~~ 307 (344)
T 4gqb_B 233 -GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR-SQ--AHRDFVRDATW 307 (344)
T ss_dssp -EETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE-EC--CCSSCEEEEEE
T ss_pred -eccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE-Ec--CCCCCEEEEEE
Confidence 45899999999987 4567789999999999999998 57999999999 9999999987654 43 37799999999
Q ss_pred CCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007 312 SSNAQ-WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 312 s~~~~-~l~~~~~dg~i~iwd~~~~~ 336 (432)
+|+++ +|++++.||+|++|++.+..
T Consensus 308 sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 308 SPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp CSSSTTEEEEEETTSCEEEEECCC--
T ss_pred eCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 99986 57789999999999998764
No 36
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=285.37 Aligned_cols=282 Identities=17% Similarity=0.198 Sum_probs=234.8
Q ss_pred CCCCCCCeEEEEEcCCCC-EEEEEcCC-cEEEEEc----CCCee------EEE--eeccc-----CcceeEEEEeeeCCe
Q 014007 81 SSSPPPTLLHISFNQDHG-CFAAGTDH-GFRIYNC----DPFRE------IFR--RDFER-----GGGIGVVEMLFRCNI 141 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~-~l~~~~~~-~i~iw~~----~~~~~------~~~--~~~~~-----~~~~~v~~~~~~~~~ 141 (432)
...|.+.|++++|+|+++ +|++|+.+ .|++|++ .+++. ... ..+.. +|...|.+++|++++
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 344668999999999999 99999854 4999999 76662 211 11211 157799999999999
Q ss_pred EEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCC-
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANP- 216 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~- 216 (432)
..+++++.| +.|++|| .+++.+..+. |...|.+++|+|++.++++ |+.|++||+.+++.+..+..+...
T Consensus 121 ~~l~~~~~d-----g~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 121 NSIVTGVEN-----GELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp SEEEEEETT-----SCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred CEEEEEeCC-----CeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence 999999998 9999999 6778888887 9999999999999988773 899999999999998888777666
Q ss_pred --------------cceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007 217 --------------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGT 281 (432)
Q Consensus 217 --------------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~ 281 (432)
+..++|++++. + ++ ++.++.|++||++.. ....+..|...|.+++|+|++++|++++.|+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 270 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDK--F-VI-PGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT 270 (425)
T ss_dssp -----------CCCBSCCEEEETTE--E-EE-ECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred cceeeccccCCcceeeEEEEcCCCE--E-EE-EcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 88899999753 2 32 347999999999984 44567789999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee
Q 014007 282 LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG 361 (432)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (432)
|++||+++++.+..+.. |...|.+++|+|++ +|++++.||.|++||+++++.
T Consensus 271 -i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~------------------------ 322 (425)
T 1r5m_A 271 -LRIWHGGNGNSQNCFYG--HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL------------------------ 322 (425)
T ss_dssp -EEEECSSSBSCSEEECC--CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE------------------------
T ss_pred -EEEEECCCCccceEecC--CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE------------------------
Confidence 99999999998888864 66899999999999 999999999999999988752
Q ss_pred cccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 362 VLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+..|...|.+++|+|++++|++++.||.|++|++..
T Consensus 323 -----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 323 -----------LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp -----------EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHH
T ss_pred -----------eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 345677888999999999999999999999999999865
No 37
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-36 Score=270.57 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=231.5
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
...+.+|.+.|++++| +++++|++|+.++ |++|++.+.+.. ..+. .|...+.+++|++++..+++++.| +
T Consensus 11 ~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----g 81 (313)
T 3odt_A 11 SATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--TVVY-TGQGFLNSVCYDSEKELLLFGGKD-----T 81 (313)
T ss_dssp EEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--EEEE-ECSSCEEEEEEETTTTEEEEEETT-----S
T ss_pred HHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--EEee-cCCccEEEEEECCCCCEEEEecCC-----C
Confidence 4567889999999999 9999999998555 999999877655 3343 578899999999999999999999 9
Q ss_pred eEEEEeCCCC---ceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEec-CCCc
Q 014007 157 KVMIWDDHQS---RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQ-GVGS 228 (432)
Q Consensus 157 ~v~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 228 (432)
.|++|++... +.+..+. |...|.++.|. +.+++ .|+.|++|| .++....+..+...+..+.+.+ +++.
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 9999998764 4566666 89999999994 33444 289999999 6778888888999999999988 5554
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
++ + ++.|+.|++||.. .....+.. |...+.+++|+|++. |++++.|+. |++||+++++.+..+.. |...|.
T Consensus 158 l~-~--~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~--~~~~i~ 229 (313)
T 3odt_A 158 FL-T--ASADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEG--HESFVY 229 (313)
T ss_dssp EE-E--EETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEE
T ss_pred EE-E--EECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhc--CCceEE
Confidence 33 2 3479999999943 33444555 999999999999998 899999999 99999999999999985 668999
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 308 SLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
+++|+|++ .|++++.||.|++||+.+++. +..+..|.+.|.+++
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-----------------------------------~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSL-----------------------------------KQVITLPAISIWSVD 273 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCE-----------------------------------EEEEECSSSCEEEEE
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCce-----------------------------------eEEEeccCceEEEEE
Confidence 99999999 588999999999999988762 445778888999999
Q ss_pred EccCCCEEEEEecCCeEEEEEecCC
Q 014007 388 FGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 388 ~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
|+|+++ +++++.||.|++|+++..
T Consensus 274 ~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp ECTTSC-EEEEETTSCEEEEESCGG
T ss_pred EccCCC-EEEEeCCCcEEEEeCCCC
Confidence 999998 667999999999998653
No 38
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.4e-36 Score=282.24 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=233.1
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
.++.|+||++ ++||+|.|+.|+|||..+++......+. +|...|.+++|++++.++++|+.| +.|++||+.++
T Consensus 107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~ 179 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQ 179 (420)
T ss_dssp TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTT
T ss_pred cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEec-CCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCC
Confidence 4678999975 5899999999999999998876555554 678899999999999999999999 99999999999
Q ss_pred ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCC-CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 167 RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD-LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 167 ~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+.+..+. |...+.++.+++ .++++ |+.+++||... ...+..+..|...+..+.+++++..++ + ++.|+.+
T Consensus 180 ~~~~~~~~h~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~--s-~~~D~~v 254 (420)
T 4gga_A 180 KRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA--S-GGNDNLV 254 (420)
T ss_dssp EEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE--E-EETTSCE
T ss_pred cEEEEEeCCCCceEEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeee--e-eeccccc
Confidence 9999988 899999888764 45552 89999999886 455677888999999999999998554 3 3489999
Q ss_pred EEEEccCCc-----eeeeeccCCceeEEEEcCCCC-EEEE--EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 242 RVEHYASKR-----TKFIMAHDSRIACFALTQDGQ-LLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 242 ~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~-~l~~--~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
++|+...+. +.....|...|.+++|+|++. ++++ |+.|+. |++||+.+++++..+.. ...+.++.|++
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~ 330 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSP 330 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEET
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecC
Confidence 999998743 455678999999999999654 5544 467999 99999999999998883 46899999999
Q ss_pred CCCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC
Q 014007 314 NAQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ 391 (432)
Q Consensus 314 ~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 391 (432)
+++.|++++ .|+.|+|||+.+++. +..+.+|.+.|++++|+||
T Consensus 331 ~~~~lv~~sg~~d~~I~iwd~~~~~~-----------------------------------v~~l~gH~~~V~~l~~spd 375 (420)
T 4gga_A 331 HYKELISGHGFAQNQLVIWKYPTMAK-----------------------------------VAELKGHTSRVLSLTMSPD 375 (420)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEECTT
T ss_pred CCCeEEEEEecCCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEEEcCC
Confidence 999988765 799999999988763 5568899999999999999
Q ss_pred CCEEEEEecCCeEEEEEecC
Q 014007 392 KNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 392 ~~~l~~~~~dg~v~iw~~~~ 411 (432)
|++|++|+.||+|+||++..
T Consensus 376 g~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 376 GATVASAAADETLRLWRCFE 395 (420)
T ss_dssp SSCEEEEETTTEEEEECCSC
T ss_pred CCEEEEEecCCeEEEEECCC
Confidence 99999999999999999854
No 39
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.1e-38 Score=294.57 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=224.2
Q ss_pred CCCCCCCeEEEEEcC-CCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCe
Q 014007 81 SSSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNK 157 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~ 157 (432)
...|...|+||+|+| ++.+||+|+. +.|+|||+.+.+......+. +|...|.+++|+| ++..|++++.| ++
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~-gH~~~V~~l~f~p~~~~~l~s~s~D-----~~ 188 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYASSME-----GT 188 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCC-SSSCCCCEEEECSSCTTEEEEECSS-----SC
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEcc-CCCCCEEEEEEeCCCCCEEEEEeCC-----CE
Confidence 446788999999999 5678999984 55999999877655445554 7999999999997 67899999999 99
Q ss_pred EEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 158 VMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
|++||++++....... +...+.+++|++++.++++ ||.|++||++ ++.+..+..|...|.+++|+|+++.+++
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEE
Confidence 9999997765433333 3456789999999998884 8999999986 4667778889999999999999887644
Q ss_pred EeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc----
Q 014007 232 VCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---- 303 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---- 303 (432)
. |+.|+.|++||++... .....+|...|++++|+|+|++|++++.|+. |+|||+.++++...+..+.+.
T Consensus 268 s--~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~~ 344 (435)
T 4e54_B 268 T--ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQH 344 (435)
T ss_dssp E--EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCSS
T ss_pred E--ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEeccccccccc
Confidence 3 3489999999998733 2334689999999999999999999999999 999999999988777653221
Q ss_pred CceEEEEECCCCCEEEEEe------------CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 304 AEIYSLAFSSNAQWLAVSS------------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
..+....|+|++.+++++. .++.|++||+.+++.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~--------------------------------- 391 (435)
T 4e54_B 345 LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM--------------------------------- 391 (435)
T ss_dssp SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEE---------------------------------
T ss_pred ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEE---------------------------------
Confidence 1344567778777777664 3457999999887632
Q ss_pred eeEEE-EecCCCceEE-EEccCCCEEEEEecCCeEEEEEecC
Q 014007 372 SVAQF-RLVEGSPYIV-AFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 372 ~~~~~-~~~~~~v~~~-~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
..+ ..|...|.++ +|+|+|++|++|+ |+.|+||++..
T Consensus 392 --~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 392 --CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp --EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred --EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 222 2466677777 7999999999876 88999998744
No 40
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-37 Score=296.64 Aligned_cols=317 Identities=8% Similarity=-0.054 Sum_probs=226.2
Q ss_pred CCCCeEEEEEcCCC---------CEEEEEc--------------------CCcEEEEEcCCCeeEE--EeecccCcceeE
Q 014007 84 PPPTLLHISFNQDH---------GCFAAGT--------------------DHGFRIYNCDPFREIF--RRDFERGGGIGV 132 (432)
Q Consensus 84 ~~~~v~~~~~s~~~---------~~l~~~~--------------------~~~i~iw~~~~~~~~~--~~~~~~~~~~~v 132 (432)
+.+.|.+|+|+|++ ++||+|+ |+.|+||++++.+... ...+. +|...|
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V 210 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEV 210 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEE-ECCCSE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEE-ecCCcE
Confidence 57899999999987 6777754 3349999997765432 12343 567789
Q ss_pred EEEeeeCC------eEEEecCCCCCCCCCCeEEEEeCCCCce-----------eEEee-cCCceEEEEEecCccEEE--e
Q 014007 133 VEMLFRCN------ILALVGGGPDPQYPLNKVMIWDDHQSRC-----------IGELS-FRSEVRSVKLRRDRIIVV--L 192 (432)
Q Consensus 133 ~~~~~~~~------~~~~~s~~~d~~~~~~~v~iwd~~~~~~-----------~~~~~-~~~~v~~~~~~~~~~~~~--~ 192 (432)
..++|+|+ +..|++++.| ++|++||+.+++. ...+. |...|.+++|++++.+++ .
T Consensus 211 ~~v~wsp~~~~~~~~~~LAs~s~D-----gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~ 285 (524)
T 2j04_B 211 WDLKWHEGCHAPHLVGCLSFVSQE-----GTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK 285 (524)
T ss_dssp EEEEECSSCCCSSSSCEEEEEETT-----SCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred EEEEECCCCCCCCCCceEEEEecC-----CeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence 99999986 5789999999 9999999987642 23455 889999999998775444 3
Q ss_pred CCeEEEEEcCCC-eeeEEEeeccCCcceE--EEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCC--ceeEEEE
Q 014007 193 EQKIFVYNFADL-KLLHQIETIANPKGLC--AVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDS--RIACFAL 266 (432)
Q Consensus 193 d~~i~i~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~--~i~~~~~ 266 (432)
||+|++||++++ .+...+..|...|..+ .+++++..+ +++ ++.|+.|+|||+++. ....+.+|.. .|.+++|
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~-laS-~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f 363 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTV-VST-VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY 363 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCE-EEE-EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeE-EEE-eccCCeEEEEECCCCCcccccccccccCcccceEe
Confidence 999999999876 3456688899999988 456766333 343 458999999999884 3445566653 5889999
Q ss_pred cCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC-
Q 014007 267 TQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS- 345 (432)
Q Consensus 267 sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 345 (432)
+|+++.|++++.|++ |++||++++.++..+.+ |...|++++|+|+|++|++|+.||+|++||+... .+.......
T Consensus 364 sp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~ 439 (524)
T 2j04_B 364 CPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSA 439 (524)
T ss_dssp ETTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----
T ss_pred CCCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCcc
Confidence 999999999999999 99999999999888886 6789999999999999999999999999998654 222211000
Q ss_pred -------CCCCCCCCCC-ceeEeecccceee-cceeeEEEEecCCCceEEEEccCCC---EEEEEecCCeEEEEEecCC
Q 014007 346 -------TSDPTLPTSS-LSFIKGVLPKYFS-SEWSVAQFRLVEGSPYIVAFGHQKN---TVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 346 -------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~~~ 412 (432)
......+... +.+.......... ....+..+.+|.+.|++|+|+|+++ +||+|+.||.|+||+++.+
T Consensus 440 ~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 440 TQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp -CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred ceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 0111222222 1111111110000 1224567889999999999999964 9999999999999998654
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-36 Score=276.51 Aligned_cols=276 Identities=17% Similarity=0.217 Sum_probs=231.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
+.+.|.+++|+|||++++++...+ +.+|....... ....+ +|...|.+++|++++..+++++ | +.|++||
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~h~~~v~~~~~~~~~~~l~~~~-d-----g~i~iw~ 78 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR-QINTL--NHGEVVCAVTISNPTRHVYTGG-K-----GCVKVWD 78 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE-EEEEE--CCSSCCCEEEECSSSSEEEEEC-B-----SEEEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccc-cceec--cCCCceEEEEEecCCcEEEEcC-C-----CeEEEEE
Confidence 456899999999999998887444 65565433222 22333 5899999999999999999998 7 9999999
Q ss_pred CCCCce---eEEe---ecCCceEEEEEecCccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEecCCCcEEE
Q 014007 163 DHQSRC---IGEL---SFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 163 ~~~~~~---~~~~---~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+.+++. +..+ .|...|.+++|+|++.++++ |+.|++||+.+++ ....+..+...+..++|+|+++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 158 (337)
T 1gxr_A 79 ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158 (337)
T ss_dssp TTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred CCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEE
Confidence 987653 2332 37889999999999988773 8999999999876 56667778888999999999876543
Q ss_pred EeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 232 VCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
++.|+.|++||+++.. ...+..|...|.+++|+|++++|++++.|+. |++||+++++.+..+. +...+.+++
T Consensus 159 ---~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~---~~~~v~~~~ 231 (337)
T 1gxr_A 159 ---CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHD---FTSQIFSLG 231 (337)
T ss_dssp ---EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEE---CSSCEEEEE
T ss_pred ---EeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeec---CCCceEEEE
Confidence 3379999999998854 4567789999999999999999999999999 9999999999988887 568899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEcc
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGH 390 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 390 (432)
|+|++++|++++.++.|++||+.+.+ ...+..|.+.|.+++|+|
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~------------------------------------~~~~~~~~~~v~~~~~~~ 275 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPD------------------------------------KYQLHLHESCVLSLKFAY 275 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSC------------------------------------EEEECCCSSCEEEEEECT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCC------------------------------------eEEEcCCccceeEEEECC
Confidence 99999999999999999999998875 234567888999999999
Q ss_pred CCCEEEEEecCCeEEEEEecC
Q 014007 391 QKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~ 411 (432)
++++|++++.||.|++|++..
T Consensus 276 ~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 276 CGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEecCCCcEEEEECCC
Confidence 999999999999999999854
No 42
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.2e-38 Score=289.85 Aligned_cols=315 Identities=11% Similarity=0.065 Sum_probs=220.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...+.+.|++++|+|++++|++|+ ++.|+||++.+........+. +|...|.+++|++++..+++++.| +.|+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~ 80 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQD-----RNAY 80 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETT-----SSEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCC-----CeEE
Confidence 344677999999999999999997 555999999877434446665 789999999999999999999999 9999
Q ss_pred EEeCCCCc---eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe---eeEEEee-ccCCcceEEEecCCCc
Q 014007 160 IWDDHQSR---CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK---LLHQIET-IANPKGLCAVSQGVGS 228 (432)
Q Consensus 160 iwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 228 (432)
+||+.+++ ....+. |...|.+++|+|++.++++ |+.|++||+++++ ....+.. |...+..++|+|+++.
T Consensus 81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 99999887 455554 8999999999999987773 8999999999876 4677777 8899999999999875
Q ss_pred EEEEeecCCCCcEEEEEccC-------------------CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 229 LVLVCPGLQKGQVRVEHYAS-------------------KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~-------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
++ + ++.|+.|++||+.. .....+ .|...|.+++|+|++++|++++.|+. |++||+.
T Consensus 161 l~--~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~ 235 (377)
T 3dwl_C 161 LA--A-GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPS 235 (377)
T ss_dssp EE--E-EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEEC
T ss_pred EE--E-EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECC
Confidence 43 3 34899999999852 223334 89999999999999999999999999 9999999
Q ss_pred CCce----EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC-C-CCCCCCCCCCCCC----------CCC
Q 014007 290 DGTL----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS-G-SARSEPRSTSDPT----------LPT 353 (432)
Q Consensus 290 ~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~-~~~~~~~~~~~~~----------~~~ 353 (432)
+++. +..+.. |...|.+++|+|++++|++++.++.+ +|+..... . ............. ...
T Consensus 236 ~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T 3dwl_C 236 APEQPPRALITVKL--SQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE 312 (377)
T ss_dssp STTSCEEECCCEEC--SSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred CCCCcceeeEeecC--CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence 9987 667775 66889999999999999999877665 66665322 1 1111100000000 000
Q ss_pred CCceeEe--ecccceeec---ceeeEEEEecCCCceEEEEccCC-C---EEEEEecCCeEEEEEe
Q 014007 354 SSLSFIK--GVLPKYFSS---EWSVAQFRLVEGSPYIVAFGHQK-N---TVVILGMDGSFYRCQF 409 (432)
Q Consensus 354 ~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~v~iw~~ 409 (432)
..+.+.. ..+...... .........|.+.|+++++.+.. . .|++|+.||.|++|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 000000000 00000112388999999976643 3 6999999999999975
No 43
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.5e-35 Score=269.75 Aligned_cols=251 Identities=14% Similarity=0.201 Sum_probs=213.8
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.++.|++++..+++++.| ++|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|+
T Consensus 49 ~~l~-gH~~~v~~~~~s~d~~~l~s~s~D-----g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~ 122 (340)
T 1got_B 49 RTLR-GHLAKIYAMHWGTDSRLLLSASQD-----GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122 (340)
T ss_dssp EEEC-CCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred eeec-CCCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence 4555 799999999999999999999999 999999999999998888 8999999999999999884 89999
Q ss_pred EEEcCCC----eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCE
Q 014007 198 VYNFADL----KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQL 272 (432)
Q Consensus 198 i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~ 272 (432)
+|++.+. +....+..|...+.++.|++++. +++ ++.|+.|++||+.++. ...+.+|...|.+++|+|++++
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s-~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 198 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVT-SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRL 198 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEE-EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCE
Confidence 9999875 45667788999999999998864 233 3479999999998854 5567889999999999999999
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCC
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLP 352 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 352 (432)
|++|+.|+. |++||+++++++..+.. |...|.+++|+|++++|++++.||+|++||+++++.+
T Consensus 199 l~sg~~d~~-v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~-------------- 261 (340)
T 1got_B 199 FVSGACDAS-AKLWDVREGMCRQTFTG--HESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-------------- 261 (340)
T ss_dssp EEEEETTSC-EEEEETTTCSEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--------------
T ss_pred EEEEeCCCc-EEEEECCCCeeEEEEcC--CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEE--------------
Confidence 999999999 99999999999988875 6689999999999999999999999999999876521
Q ss_pred CCCceeEeecccceeecceeeEEEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 353 TSSLSFIKGVLPKYFSSEWSVAQFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
..+.. +...|.+++|+|+|++|++|+.||.|++|++.. ++.+..+..
T Consensus 262 ---------------------~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~--~~~~~~~~~ 310 (340)
T 1got_B 262 ---------------------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK--ADRAGVLAG 310 (340)
T ss_dssp ---------------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEEEEEEC
T ss_pred ---------------------EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc--CcEeeEeec
Confidence 11111 223689999999999999999999999999743 344444443
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-36 Score=284.70 Aligned_cols=277 Identities=11% Similarity=0.071 Sum_probs=227.0
Q ss_pred CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
..+++++|+|+|++|++++ ++.|++|++.+.+.. ..+. .+ ..+....+++++..+++++.| +.|++||+.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~ 127 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS--KMLK-RA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSN 127 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT--TTSC-SC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTT
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee--eEEe-cC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCC
Confidence 3456789999999999998 556999998765543 3333 23 334445688999999999998 999999999
Q ss_pred CCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007 165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (432)
+++.+..+. |...|.+++|+|++.++++ |+.|++||+.+++.+..+..|...+..++|+|+++.++. ++.|+.
T Consensus 128 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~d~~ 204 (420)
T 3vl1_A 128 FNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLS---ASLDGT 204 (420)
T ss_dssp SCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEE---EETTSC
T ss_pred CcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEE---EcCCCc
Confidence 999888876 9999999999999988884 899999999999999999999999999999999885542 348999
Q ss_pred EEEEEccCCce-eeeec---cC---------------------CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE
Q 014007 241 VRVEHYASKRT-KFIMA---HD---------------------SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (432)
Q Consensus 241 i~i~d~~~~~~-~~~~~---~~---------------------~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~ 295 (432)
|++||++++.. ..+.. |. ..+.+++|+|++++|++++.||. |++||+++++.+.
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTI 283 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeE
Confidence 99999987543 33432 33 44555566899999999999999 9999999999888
Q ss_pred EEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007 296 EVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 296 ~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
.+... |...|.+++|+|+++ +|++++.||.|++||+++++.. +.
T Consensus 284 ~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----------------------------------~~ 328 (420)
T 3vl1_A 284 QLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP----------------------------------VG 328 (420)
T ss_dssp EECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------------------------------SE
T ss_pred Ecccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc----------------------------------hh
Confidence 87653 678999999999999 9999999999999999987531 23
Q ss_pred EEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 375 QFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 375 ~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+.. |...|.++.| +++++|++++.||.|++|++..
T Consensus 329 ~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 329 EFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred hhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 4555 5567777754 6889999999999999999865
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-35 Score=277.22 Aligned_cols=275 Identities=12% Similarity=0.087 Sum_probs=229.6
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
.+.++.|++ +.+++++.++.|++|++.+++....... .|...|.+++|++++..+++++.| |.|++||+.++
T Consensus 95 ~~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 166 (401)
T 4aez_A 95 YLNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAET--DESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQ 166 (401)
T ss_dssp TCBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEEC--CTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTC
T ss_pred eEEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeec--CCCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCC
Confidence 355677776 3456666677799999998876643333 478899999999999999999988 99999999999
Q ss_pred ceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcC-CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 167 RCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFA-DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 167 ~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+.+..+. |...|.+++|+++ +++ .|+.|++||++ ....+..+..|...+..++|+|+++.++. |+.|+.|
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s---~~~d~~v 241 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS---GGNDNVV 241 (401)
T ss_dssp CEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE---EETTSCE
T ss_pred eEEEEecCCCCceEEEEECCC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE---EeCCCeE
Confidence 9999987 9999999999554 444 28999999998 46677888889999999999998875443 3489999
Q ss_pred EEEEccCCc-eeeeeccCCceeEEEEcCCCC-EEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCE
Q 014007 242 RVEHYASKR-TKFIMAHDSRIACFALTQDGQ-LLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW 317 (432)
Q Consensus 242 ~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~-~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 317 (432)
++||++... ...+..|...|.+++|+|++. ++++++ .|+. |++||+.+++++..+. +...|.+++|+|++++
T Consensus 242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~s~~~~~ 317 (401)
T 4aez_A 242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVD---AGSQVTSLIWSPHSKE 317 (401)
T ss_dssp EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEECSSSSE
T ss_pred EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEe---CCCcEEEEEECCCCCe
Confidence 999999854 456778999999999999764 556654 7999 9999999999999987 4578999999999999
Q ss_pred EEEE--eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE
Q 014007 318 LAVS--SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV 395 (432)
Q Consensus 318 l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 395 (432)
|+++ +.||.|++||+.+++.. ....+.+|.+.|.+++|+|++++|
T Consensus 318 l~~~~g~~dg~i~v~~~~~~~~~---------------------------------~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 318 IMSTHGFPDNNLSIWSYSSSGLT---------------------------------KQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp EEEEECTTTCEEEEEEEETTEEE---------------------------------EEEEEECCSSCCCEEEECTTSSEE
T ss_pred EEEEeecCCCcEEEEecCCccce---------------------------------eEEEecCCCCCEEEEEECCCCCEE
Confidence 9995 48999999999886521 133467899999999999999999
Q ss_pred EEEecCCeEEEEEecC
Q 014007 396 VILGMDGSFYRCQFDP 411 (432)
Q Consensus 396 ~~~~~dg~v~iw~~~~ 411 (432)
++++.||.|++|++..
T Consensus 365 ~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 365 STAASDENLKFWRVYD 380 (401)
T ss_dssp EEECTTSEEEEEECCC
T ss_pred EEEeCCCcEEEEECCC
Confidence 9999999999999854
No 46
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=287.05 Aligned_cols=316 Identities=13% Similarity=0.161 Sum_probs=232.3
Q ss_pred ccCCCCCCCeEEEEEcC-CCCEEEEEcC-CcEEEEEcCC---CeeE-EEeecccCcceeEEEEeeeCCeEEEecCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQ-DHGCFAAGTD-HGFRIYNCDP---FREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ 152 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~-~~i~iw~~~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 152 (432)
....+|.+.|++++|+| ++++|++|+. +.|+|||+.+ .... ....+ +|...|.+++|++++..+++++.|
T Consensus 57 ~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~s~d-- 132 (437)
T 3gre_A 57 TLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY--DCSSTVTQITMIPNFDAFAVSSKD-- 132 (437)
T ss_dssp EECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE--ECSSCEEEEEECTTSSEEEEEETT--
T ss_pred eeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec--cCCCCEEEEEEeCCCCEEEEEeCC--
Confidence 34488999999999999 9999999985 4599999865 3211 11223 488999999999999999999999
Q ss_pred CCCCeEEEEeCC---CCceeEEee-------------cCCceEEEE--EecCccEEEe---CCeEEEEEcCCCeeeEEEe
Q 014007 153 YPLNKVMIWDDH---QSRCIGELS-------------FRSEVRSVK--LRRDRIIVVL---EQKIFVYNFADLKLLHQIE 211 (432)
Q Consensus 153 ~~~~~v~iwd~~---~~~~~~~~~-------------~~~~v~~~~--~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~ 211 (432)
+.|++||+. +++.+..+. +...+.++. +++++.++++ |+.|++||+++++.+..+.
T Consensus 133 ---g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 133 ---GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ---SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ---CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999985 554444332 344566666 4567877773 8999999999999999998
Q ss_pred e--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeee-ccCCceeEEEEc----CCCCEEEEEcCCCceE
Q 014007 212 T--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM-AHDSRIACFALT----QDGQLLATSSTKGTLV 283 (432)
Q Consensus 212 ~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~-~~~~~i~~~~~s----p~~~~l~~~~~dg~~i 283 (432)
. |...+.+++|+|+++.++. |+.||.|++||++.+.. ..+. .|...|.+++|+ |++.+|++|+.|+. |
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i 285 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLIL---GTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-L 285 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEE---EETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-E
T ss_pred cCCCCCceEEEEECCCCCEEEE---EcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-E
Confidence 7 7889999999999875442 34899999999998654 4443 788899999665 56889999999999 9
Q ss_pred EEEECCCCceEEEEEeCC------------------------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 284 RIFNTLDGTLLQEVRRGA------------------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~------------------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
++||+++++++..+..+. |...|++++|+ ++++|++++.||.|++||+.+++...
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 999999999999888542 55668999999 78999999999999999999988665
Q ss_pred CCCCCCCCCCC----CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccC--CCEEEEEecCCeEEEEE
Q 014007 340 RSEPRSTSDPT----LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQ--KNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 340 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~v~iw~ 408 (432)
....+...... .......+....... .....+.....|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKR--TSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EEecccccCceEEEEEeecceEEEEEeccc--ccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 54433211100 000000000000000 000112234559999999999998 78999999999999994
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=264.21 Aligned_cols=272 Identities=13% Similarity=0.139 Sum_probs=228.2
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
.++|+||+++ +||+|.|+.|+|||+++++......+. +|...|.+++|++++..+++|+.| +.|++||+.+++
T Consensus 28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~ 100 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQME-QPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQK 100 (318)
T ss_dssp CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECC-STTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTE
T ss_pred ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEec-CCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCce
Confidence 5779999986 899999999999999998877545554 688899999999999999999999 999999999999
Q ss_pred eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 168 CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 168 ~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
.+..+. |...+.++.+.+ .++++ ++.+++|+.... ..+..+..|...+..+.+.++++.++ + ++.|+.|+
T Consensus 101 ~~~~~~~h~~~~~~~~~~~--~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s-~~~d~~i~ 175 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLA--S-GGNDNLVN 175 (318)
T ss_dssp EEEEEECCSSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEE--E-EETTSCEE
T ss_pred eEEEecCccceEEEeecCC--CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEE--E-EecCccee
Confidence 999988 888887766554 45552 889999998765 45667788889999999999988553 2 34899999
Q ss_pred EEEccCCc-----eeeeeccCCceeEEEEcCCCCEE---EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007 243 VEHYASKR-----TKFIMAHDSRIACFALTQDGQLL---ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 243 i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l---~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
+||++++. ......|...|.+++++|++..+ ++++.++. |++||........... +...+..+.|+++
T Consensus 176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~ 251 (318)
T 4ggc_A 176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVD---AHSQVCSILWSPH 251 (318)
T ss_dssp EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEETT
T ss_pred EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccccccccccc---ceeeeeeeeeccc
Confidence 99998743 33456788899999999976533 46778899 9999999998887776 5578999999999
Q ss_pred CCEEEEEe--CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 315 AQWLAVSS--DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 315 ~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
+..+++++ .|+.|+|||+++++. +..+++|.+.|++++|+|||
T Consensus 252 ~~~~~~~sg~~d~~i~iwd~~~~~~-----------------------------------~~~l~gH~~~V~~l~~spdg 296 (318)
T 4ggc_A 252 YKELISGHGFAQNQLVIWKYPTMAK-----------------------------------VAELKGHTSRVLSLTMSPDG 296 (318)
T ss_dssp TTEEEEEECTTTCCEEEEETTTCCE-----------------------------------EEEECCCSSCEEEEEECTTS
T ss_pred ccceEEEEEcCCCEEEEEECCCCcE-----------------------------------EEEEcCCCCCEEEEEEcCCC
Confidence 99887765 799999999998763 45688999999999999999
Q ss_pred CEEEEEecCCeEEEEEec
Q 014007 393 NTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~~~ 410 (432)
++|++|+.||+|+||++.
T Consensus 297 ~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 297 ATVASAAADETLRLWRCF 314 (318)
T ss_dssp SCEEEEETTTEEEEECCS
T ss_pred CEEEEEecCCeEEEEECC
Confidence 999999999999999974
No 48
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-37 Score=288.02 Aligned_cols=283 Identities=12% Similarity=0.161 Sum_probs=232.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEE----------c-CCcEEEEEcCCCeeE-EEeecccCcceeEEEEeeeCCeEEEecCCCC
Q 014007 84 PPPTLLHISFNQDHG-CFAAG----------T-DHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRCNILALVGGGPD 150 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~-~l~~~----------~-~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 150 (432)
+...|.+++|+|+++ +|++| + |+.|+||++.+.+.. ....+ .|...|.+++|++++..+++++.|
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEccC
Confidence 345788999999997 89998 5 445999999876532 11333 478899999999999999999988
Q ss_pred CCCCCCeEEEEeCCC----CceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCe------eeEE---Eee
Q 014007 151 PQYPLNKVMIWDDHQ----SRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLK------LLHQ---IET 212 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~----~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~------~~~~---~~~ 212 (432)
+.|++||+.+ .+.+..+. |...|.+++|+|+ +.++++ |+.|++||+.+++ .... +..
T Consensus 89 -----g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 163 (416)
T 2pm9_A 89 -----GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163 (416)
T ss_dssp -----SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC
T ss_pred -----CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC
Confidence 9999999987 34677776 9999999999998 777763 8999999999876 3322 356
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeecc------CCceeEEEEcCCC-CEEEEEcCCC---c
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------DSRIACFALTQDG-QLLATSSTKG---T 281 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~------~~~i~~~~~sp~~-~~l~~~~~dg---~ 281 (432)
|...+..++|+|++..++++ ++.|+.|++||++.... ..+..| ...|.+++|+|++ .+|++++.|+ .
T Consensus 164 ~~~~v~~~~~~~~~~~~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 164 SVDEVISLAWNQSLAHVFAS--AGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp SSCCCCEEEECSSCTTEEEE--ESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred CCCCeeEEEeCCCCCcEEEE--EcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 78889999999996555433 35899999999988543 444444 7889999999997 6899999998 9
Q ss_pred eEEEEECCCC-ceEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007 282 LVRIFNTLDG-TLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359 (432)
Q Consensus 282 ~i~vwd~~~~-~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (432)
|++||++++ +.+..+.. .|...|.+++|+| ++++|++++.||.|++||+++++.
T Consensus 242 -i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~---------------------- 297 (416)
T 2pm9_A 242 -ILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ---------------------- 297 (416)
T ss_dssp -CCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE----------------------
T ss_pred -EEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc----------------------
Confidence 999999986 55555541 2668999999999 999999999999999999988762
Q ss_pred eecccceeecceeeEEEEecCCCceEEEEccCC-CEEEEEecCCeEEEEEecCC
Q 014007 360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK-NTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~iw~~~~~ 412 (432)
+..+..|.+.|.+++|+|++ ++|++++.||.|++|++...
T Consensus 298 -------------~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 298 -------------LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp -------------EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred -------------ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 45677899999999999999 89999999999999998654
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-35 Score=277.42 Aligned_cols=285 Identities=10% Similarity=0.068 Sum_probs=229.9
Q ss_pred CCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
..+....|++++++|++|+. +.|++|++.+.+.. ..+. +|...|.+++|++++..+++++.| +.|++||+.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~ 169 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--EIDQ-AHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVK 169 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE--EETT-SSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETT
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee--eecc-cccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCC
Confidence 44555678999999999985 45999999877654 4554 799999999999999999999999 999999999
Q ss_pred CCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc------------------------CC
Q 014007 165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA------------------------NP 216 (432)
Q Consensus 165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~------------------------~~ 216 (432)
+++.+..+. |...|.+++|+|++.++++ |+.|++||+++++.+..+..+. ..
T Consensus 170 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 170 DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 999999888 9999999999999998884 8999999999999888886532 33
Q ss_pred cceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eee-eccCCceeEEEEcCCCC-EEEEEcCCCceEEEEECCCCce
Q 014007 217 KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFI-MAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTLDGTL 293 (432)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~-~~~~~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~~~~ 293 (432)
+..++|+|+++.+ ++ |+.||.|++||+++... ..+ ..|...|.+++|+|++. +|++|+.||. |++||+++++.
T Consensus 250 v~~~~~s~~~~~l--~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~ 325 (420)
T 3vl1_A 250 KNNLEFGTYGKYV--IA-GHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPEC 325 (420)
T ss_dssp CCTTCSSCTTEEE--EE-EETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTS
T ss_pred ccceEEcCCCCEE--EE-EcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcC
Confidence 4445566777644 33 44899999999988543 333 45889999999999998 9999999999 99999998754
Q ss_pred -EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007 294 -LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS 372 (432)
Q Consensus 294 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (432)
+..+..+ +...|.++.| +++++|++++.||.|++||+.......... ....
T Consensus 326 ~~~~~~~~-~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~--------------------------~~~~ 377 (420)
T 3vl1_A 326 PVGEFLIN-EGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAI--------------------------EFET 377 (420)
T ss_dssp CSEEEEES-TTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEE--------------------------CTTS
T ss_pred chhhhhcc-CCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccce--------------------------eccC
Confidence 6777764 5678888866 578899999999999999998854322110 0000
Q ss_pred eEEEEecCCCceEEEEccCCC---EEEEEecCCeEEEEEec
Q 014007 373 VAQFRLVEGSPYIVAFGHQKN---TVVILGMDGSFYRCQFD 410 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~---~l~~~~~dg~v~iw~~~ 410 (432)
...+..|.+.|..++|+|+++ .|++++.+|.+.+|+++
T Consensus 378 ~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 378 PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 123556888999999999999 78888899999999974
No 50
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.4e-36 Score=278.17 Aligned_cols=245 Identities=15% Similarity=0.202 Sum_probs=199.5
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...|...|++++|+|++++|+++.++.|+|||+.+++......+. .+|...|.+++|++++..+++++.| +.|+
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~ 164 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVK 164 (357)
T ss_dssp EEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEE
T ss_pred cCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEE
Confidence 345888999999999998888777888999999876654322221 2688999999999999999999999 9999
Q ss_pred EEeCCCCceeEEee-cCCceEEEEEecCcc-EEE---eCCeEEEEEcCCCeeeEEEe--eccCCcceEEEecCCCcEEEE
Q 014007 160 IWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVV---LEQKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 160 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~---~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 232 (432)
+||+.+++.+..+. |...|.+++|++++. +++ .|+.|++||+++++....+. .+...+..++|+|++..++ +
T Consensus 165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~l-a 243 (357)
T 4g56_B 165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTF-A 243 (357)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEE-E
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceE-E
Confidence 99999999999998 999999999999864 344 28999999999988766554 3455678899999877654 3
Q ss_pred eecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEE
Q 014007 233 CPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~ 310 (432)
+ |+.|+.|++||+++ .....+.+|...|++++|+|++ ++|++|+.|++ |+|||+++++++..+. |...|++++
T Consensus 244 ~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~~---H~~~V~~va 318 (357)
T 4g56_B 244 C-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDLS---HRDFVTGVA 318 (357)
T ss_dssp E-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEECC---CSSCEEEEE
T ss_pred E-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEECC---CCCCEEEEE
Confidence 3 45899999999988 4566788999999999999987 57999999999 9999999998876653 789999999
Q ss_pred ECC-CCCEEEEEeCCCeEEEEEecCCC
Q 014007 311 FSS-NAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 311 ~s~-~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|+| ++++|++++.||+|++||+.+..
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 998 89999999999999999997654
No 51
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=281.31 Aligned_cols=311 Identities=10% Similarity=0.141 Sum_probs=221.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee---------EEEeecccCcc------------eeEEEEeeeCC
Q 014007 83 SPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE---------IFRRDFERGGG------------IGVVEMLFRCN 140 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~~ 140 (432)
.+.+.|++++|+|+|++||+|+.++ |+||++.+.+. .....+. +|. ..|.++.|+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCC
Confidence 4678999999999999999998555 99999986552 1234554 576 78999999999
Q ss_pred e--EEEecCCCCCCCCCCeEEEEeCCCCcee---------------------------------------EEe-e-cCCc
Q 014007 141 I--LALVGGGPDPQYPLNKVMIWDDHQSRCI---------------------------------------GEL-S-FRSE 177 (432)
Q Consensus 141 ~--~~~~s~~~d~~~~~~~v~iwd~~~~~~~---------------------------------------~~~-~-~~~~ 177 (432)
+ ..+++++.| +.|++||+.+++.. ..+ . |...
T Consensus 105 ~~~~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 105 KNAAQFLLSTND-----KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp CSSSEEEEEECS-----SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred CCcceEEEeCCC-----CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 7 778888888 99999998765432 122 2 8899
Q ss_pred eEEEEEecCccEEEe--CCeEEEEEcCC-CeeeEE-------EeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 178 VRSVKLRRDRIIVVL--EQKIFVYNFAD-LKLLHQ-------IETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 178 v~~~~~~~~~~~~~~--d~~i~i~d~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
|.+++|+|++.++++ |+.|++||+++ ++.+.. +..|...+.+++|+|++..++ ++ |+.||.|++||++
T Consensus 180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~s-~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF-VY-SSSKGTIRLCDMR 257 (447)
T ss_dssp CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE-EE-EETTSCEEEEETT
T ss_pred eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE-EE-EeCCCeEEEEECc
Confidence 999999999998884 89999999984 444442 446778899999999984433 32 3489999999999
Q ss_pred CCc-----eeeeeccCC------------ceeEEEEcCCCCEEEEEcCCCceEEEEECCC-CceEEEEEeCCCcC-----
Q 014007 248 SKR-----TKFIMAHDS------------RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRA----- 304 (432)
Q Consensus 248 ~~~-----~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~----- 304 (432)
... ...+..|.. .|.+++|+|+|++|++++. +. |++||+++ ++++..+..+....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeeccccccccccc
Confidence 865 466777776 8999999999999999999 98 99999997 88888888542100
Q ss_pred --------ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC-CCCCCCceeEeecccceeecceeeEE
Q 014007 305 --------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP-TLPTSSLSFIKGVLPKYFSSEWSVAQ 375 (432)
Q Consensus 305 --------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (432)
.+..++|+|++++|++++.||.|++||+.+++.+.-. .+..... ............. .+ ....... .
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~ 411 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLE-ASRENNKPRTVLKPRKVCASG-KR-KKDEISV-D 411 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEE-CCSTTCCTTCBCCCCCEECSS-CC-CTTCEEG-G
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeee-ecccccccccccCCccccccC-Cc-ccccccc-c
Confidence 1345999999999999999999999999987743211 1100000 0000000000000 00 0000000 0
Q ss_pred EEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 376 FRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 376 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
...+...|..++|+|++++||+++.++ +++|.
T Consensus 412 ~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 412 SLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp GCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred ccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 001345789999999999999998876 77775
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=273.99 Aligned_cols=292 Identities=10% Similarity=0.080 Sum_probs=235.2
Q ss_pred cccCCCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecc----------cCcceeEEEEeeeC-CeEEE
Q 014007 78 ESTSSSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFE----------RGGGIGVVEMLFRC-NILAL 144 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~-~~~~~ 144 (432)
......|.+.|++++|+| ++++|++|+ |+.|++|++.+.+........ .+|...|.++.|++ ++..+
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 355677999999999999 999999998 445999999876543222110 24889999999999 77788
Q ss_pred ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc---cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcc
Q 014007 145 VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR---IIVVL---EQKIFVYNFADLKLLHQIETIANPKG 218 (432)
Q Consensus 145 ~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~ 218 (432)
++++.| +.|++||+.+++.+..+.+...+.++.+++.+ .++++ |+.|++||+++++.+..+..|...+.
T Consensus 116 ~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 116 TSSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp EEEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred EEEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 888888 99999999999999999999999999999854 36663 89999999999999999999999999
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCc--eeee---------------eccCCceeEEEEcCCCCEEEEEcCCCc
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFI---------------MAHDSRIACFALTQDGQLLATSSTKGT 281 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~---------------~~~~~~i~~~~~sp~~~~l~~~~~dg~ 281 (432)
+++|+|+++.++++ ++.||.|++||++... ...+ ..|...|.+++|+|++++|++++.|+.
T Consensus 191 ~~~~~~~~~~ll~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 191 AVSWSPRYDYILAT--ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp EEEECSSCTTEEEE--EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEECCCCCcEEEE--EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 99999999875433 3489999999998742 2222 578899999999999999999999999
Q ss_pred eEEEEECCCCceEEEEEeCCC---cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007 282 LVRIFNTLDGTLLQEVRRGAD---RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358 (432)
Q Consensus 282 ~i~vwd~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
|++||+.+++....+..... ...+........+..+++++.++.|++||+.+++.
T Consensus 269 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--------------------- 326 (408)
T 4a11_B 269 -MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ--------------------- 326 (408)
T ss_dssp -EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE---------------------
T ss_pred -EEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc---------------------
Confidence 99999999877654432211 11222222233455666777899999999988763
Q ss_pred EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
+..+.+|.+.|.+++|+|++++|++++.||.|++|+++..
T Consensus 327 --------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 327 --------------ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp --------------EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred --------------eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 4467789999999999999999999999999999999653
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3e-35 Score=262.54 Aligned_cols=245 Identities=11% Similarity=0.136 Sum_probs=201.1
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--ceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFV 198 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i 198 (432)
+|...|.+++|++++..|++++.| ++|++||+..+ +.+.++. |.+.|.+++|+++ +.++++ |++|++
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 789999999999999999999999 99999998753 6677887 9999999999863 777773 999999
Q ss_pred EEcCCCe--eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCC----
Q 014007 199 YNFADLK--LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQD---- 269 (432)
Q Consensus 199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~---- 269 (432)
||+++++ .+..+..|...+.+++|+|+....++++ ++.|+.|++||++... ...+.+|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-EETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-EECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 9998874 5566777889999999999832223343 3489999999998742 4567799999999999997
Q ss_pred ---------CCEEEEEcCCCceEEEEECCCCc----eEEEEEeCCCcCceEEEEECCCC---CEEEEEeCCCeEEEEEec
Q 014007 270 ---------GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNA---QWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 270 ---------~~~l~~~~~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~ 333 (432)
+++|++|+.|+. |++||+++++ +...+.+ |...|.+++|+|++ ++|++++.|++|+|||++
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ---------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 579999999999 9999998876 4455553 77899999999985 899999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE--EecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF--RLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..... ....+ ..|.+.|.+++|+|++++|++++.||.|+||+.+.
T Consensus 238 ~~~~~~--------------------------------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPW--------------------------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCC--------------------------------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCcc--------------------------------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 753110 00011 24567899999999999999999999999999865
Q ss_pred C
Q 014007 412 V 412 (432)
Q Consensus 412 ~ 412 (432)
.
T Consensus 286 ~ 286 (297)
T 2pm7_B 286 E 286 (297)
T ss_dssp T
T ss_pred C
Confidence 3
No 54
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=264.73 Aligned_cols=260 Identities=16% Similarity=0.145 Sum_probs=208.6
Q ss_pred EeecccCcce-eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE--Ee-e-cCCceEEEEEecCccEEEe---
Q 014007 121 RRDFERGGGI-GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG--EL-S-FRSEVRSVKLRRDRIIVVL--- 192 (432)
Q Consensus 121 ~~~~~~~~~~-~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~--~~-~-~~~~v~~~~~~~~~~~~~~--- 192 (432)
...+. +|.. .+..++|+|++..|++++.| +.|++||+.++.... .+ . |...|.+++|+|++.++++
T Consensus 8 ~~~~~-~h~~~~v~~l~~sp~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 8 LGRVP-AHPDSRCWFLAWNPAGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEC-CSTTSCEEEEEECTTSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred eeeec-CCCCCcEEEEEECCCCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 35565 5655 89999999999999999999 999999998876432 22 3 8899999999999998884
Q ss_pred CCeEEEEEcCCC--eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEE
Q 014007 193 EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFAL 266 (432)
Q Consensus 193 d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~ 266 (432)
|+.|++||+..+ +.+..+..|...|..++|+|+++.+ ++ ++.|+.|++||++... ...+.+|...|.+++|
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l--~s-~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL--AT-CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEE--EE-EETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEE--EE-EECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence 899999998876 4577888999999999999998754 33 3489999999998742 3456789999999999
Q ss_pred cCCCCEEEEEcCCCceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCC
Q 014007 267 TQDGQLLATSSTKGTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (432)
Q Consensus 267 sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 344 (432)
+|++++|++++.|+. |++||.++++.. ..+. .|...|.+++|+|+|++|++++.|++|+|||.............
T Consensus 159 ~p~~~~l~s~s~d~~-i~~w~~~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 159 HPSQELLASASYDDT-VKLYREEEDDWVCCATLE--GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp CSSSSCEEEEETTSC-EEEEEEETTEEEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC
T ss_pred CCCCCEEEEEeCCCc-EEEEEecCCCEEEEEEec--CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee
Confidence 999999999999999 999999887644 4444 47789999999999999999999999999998654422111000
Q ss_pred CCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 345 STSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
.. .....++..+.+ |...|.+++|+|++..|++++.|+.|++|+++..
T Consensus 236 ------~~--------------~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 236 ------GS--------------DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp -----------------------CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred ------cc--------------CCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 00 000111333444 7788999999999999999999999999998764
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.6e-34 Score=260.51 Aligned_cols=243 Identities=11% Similarity=0.193 Sum_probs=210.5
Q ss_pred EEeecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCC-----CceeEEee-cCCceEEEEEecCccEEEe
Q 014007 120 FRRDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQ-----SRCIGELS-FRSEVRSVKLRRDRIIVVL 192 (432)
Q Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 192 (432)
+...+. +|...|.+++|++++ ..+++++.| ++|++|++.. +.++..+. |...|.+++|++++.++++
T Consensus 9 l~~~l~-gH~~~V~~l~~~~~~~~~l~s~s~D-----~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 9 LRGTLE-GHNGWVTSLATSAGQPNLLLSASRD-----KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEEEC-CCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEc-cccceEEEEEccCCCccEEEEecCC-----ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 345665 899999999999865 789999999 9999999864 23466677 9999999999999998884
Q ss_pred ---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCC
Q 014007 193 ---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD 269 (432)
Q Consensus 193 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~ 269 (432)
|++|++||+.+++.+..+..|...+..++|++++..+ ++ |+.|+.|++||++...+..+.+|...|.++.|+|.
T Consensus 83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l--~s-~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI--IS-GSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEE--EE-EETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC
T ss_pred EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEE--EE-EeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccC
Confidence 9999999999999999999999999999999998754 33 45899999999998888889999999999999985
Q ss_pred ------CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007 270 ------GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (432)
Q Consensus 270 ------~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 343 (432)
+.+|++++.|+. |++||+++++....+.+ |...|.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 160 ~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~------ 230 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKM-VKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKA------ 230 (319)
T ss_dssp ------CCEEEEEETTSC-EEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEE------
T ss_pred CCCCCCccEEEEEeCCCE-EEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE------
Confidence 458999999999 99999999998888875 678999999999999999999999999999988762
Q ss_pred CCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.. .+.|.+++|+|++.+|++++.+ .+++|+++.
T Consensus 231 -----------------------------~~~~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 231 -----------------------------MYTLSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp -----------------------------EEEEEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETT
T ss_pred -----------------------------EEEecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCc
Confidence 223333 3579999999999999988765 599999865
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=269.57 Aligned_cols=285 Identities=13% Similarity=0.134 Sum_probs=228.9
Q ss_pred CCcccCCCCCCCeEEEEEcCC---CCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC
Q 014007 76 PAESTSSSPPPTLLHISFNQD---HGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 76 ~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
........|.+.|++++|+|+ |++|++|+.+ .|+||++.+........+. +|...|.++.|++++..+++++.|
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d- 107 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCD- 107 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETT-
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCC-
Confidence 345678899999999999999 5899999854 5999999874444334454 689999999999999999999999
Q ss_pred CCCCCeEEEEeCCCCceeEEeecCCceEEEEE--ecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC
Q 014007 152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKL--RRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (432)
+.|++||+.+++.+....|...|.+++| ++++.++++ |+.|++||+++++.+..+..+. . ..++.+.+
T Consensus 108 ----g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~--~~~~~~~~ 180 (368)
T 3mmy_A 108 ----KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R--CYCADVIY 180 (368)
T ss_dssp ----SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C--EEEEEEET
T ss_pred ----CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C--ceEEEecC
Confidence 9999999999998887779999999999 888887773 8999999999999888887654 3 34444444
Q ss_pred CcEEEEeecCCCCcEEEEEccCCceee---eeccCCceeEEEEcCCCCE----EEEEcCCCceEEEEECCCC---ceEEE
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASKRTKF---IMAHDSRIACFALTQDGQL----LATSSTKGTLVRIFNTLDG---TLLQE 296 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~sp~~~~----l~~~~~dg~~i~vwd~~~~---~~~~~ 296 (432)
..++++ ..++.+.+|+++...... ...+...+.++.+.++... +++++.|+. |++||++.. +.+..
T Consensus 181 ~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 181 PMAVVA---TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFT 256 (368)
T ss_dssp TEEEEE---EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEE
T ss_pred CeeEEE---eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCcccccee
Confidence 544433 368999999998743322 1234456667777665554 999999999 999999887 55667
Q ss_pred EEeCCCcC------------ceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 297 VRRGADRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 297 ~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
+.. |.. .|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 257 ~~~--~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~--------------------------- 307 (368)
T 3mmy_A 257 FKC--HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK--------------------------- 307 (368)
T ss_dssp EEC--SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE---------------------------
T ss_pred eee--eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE---------------------------
Confidence 764 333 699999999999999999999999999998763
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+..+..|.+.|++++|+|++++|++++.|+..+.|++-
T Consensus 308 --------~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 308 --------LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp --------EEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred --------EEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 34566788899999999999999999999877665543
No 57
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.2e-35 Score=261.04 Aligned_cols=247 Identities=16% Similarity=0.162 Sum_probs=199.8
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPLN 156 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~~ 156 (432)
+..+|.+.|++++|+|+|++|++|+ |+.|+||+++.........+. +|...|.+++|+++ +..+++++.| +
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D-----~ 77 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD-----G 77 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----T
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCC-----C
Confidence 4678999999999999999999998 555999999754333335665 79999999999763 7899999999 9
Q ss_pred eEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEecCC
Q 014007 157 KVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 157 ~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~ 226 (432)
+|++||+.+++ .+..+. |...|.+++|+|+ +.++++ |+.|++||++++. ....+..|...+..++|+|++
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 99999998874 455565 8899999999997 666663 8999999998753 245667888899999999974
Q ss_pred C-----------cEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCCC---CEEEEEcCCCceEEEEE
Q 014007 227 G-----------SLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFN 287 (432)
Q Consensus 227 ~-----------~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd 287 (432)
. ..++++ |+.|+.|++||++... ...+.+|...|.+++|+|++ .+|++++.|++ |++||
T Consensus 158 ~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~iWd 235 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CIIWT 235 (297)
T ss_dssp ------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEEE
T ss_pred ccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EEEEE
Confidence 1 123444 4589999999998743 34678999999999999984 89999999999 99999
Q ss_pred CCCCc--e-EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 288 TLDGT--L-LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 288 ~~~~~--~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+++.. . ...+....|...|.+++|+|+|++|++++.||.|+||+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 98753 1 22222134668899999999999999999999999999864
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.6e-35 Score=295.20 Aligned_cols=285 Identities=13% Similarity=0.171 Sum_probs=242.6
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|.+.|++++|+|+|++|++|+.++ |+|||+.+++.. ..+. +|...|.++.|++++..+++++.| |
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g 77 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEV--RSIQ-VTETPVRAGKFIARKNWIIVGSDD-----F 77 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEEGGGTEEEEEETT-----S
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceE--EEEe-cCCCcEEEEEEeCCCCEEEEEeCC-----C
Confidence 355678999999999999999999998555 999999887765 4554 688999999999999999999998 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC-eeeEEEeeccCCcceEEEec-CCCcEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL-KLLHQIETIANPKGLCAVSQ-GVGSLV 230 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 230 (432)
.|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|++||+.++ .....+..|...+.+++|+| +++.++
T Consensus 78 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 99999999999999998 9999999999999988773 899999999886 67778888999999999999 554333
Q ss_pred EEeecCCCCcEEEEEccCCc-eeeeec-cCCceeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007 231 LVCPGLQKGQVRVEHYASKR-TKFIMA-HDSRIACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~-~~~~~~-~~~~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
+ ++.||.|++||+.... ...+.. +...+.+++|+| ++.+|++++.|+. |++||+.+++.+..+.. |...|
T Consensus 158 --~-~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~--~~~~v 231 (814)
T 3mkq_A 158 --S-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEG--HMSNV 231 (814)
T ss_dssp --E-EETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEEC--CSSCE
T ss_pred --E-EeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcC--CCCCE
Confidence 2 3479999999998743 334444 448999999999 9999999999999 99999999999998885 56889
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (432)
.+++|+|++++|++++.||.|++||+.+++. ...+..|.+.+.++
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-----------------------------------~~~~~~~~~~v~~~ 276 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-----------------------------------EKTLNVGLERSWCI 276 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSE-----------------------------------EEEECCSSSSEEEE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEeecCCCcEEEE
Confidence 9999999999999999999999999988762 33566777889999
Q ss_pred EEccCCCE-EEEEecCCeEEEEEecC
Q 014007 387 AFGHQKNT-VVILGMDGSFYRCQFDP 411 (432)
Q Consensus 387 ~~s~~~~~-l~~~~~dg~v~iw~~~~ 411 (432)
+|+|+++. +++++.|+.+.+|++..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 277 ATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEccCCCceEEEEEeCCCEEEEEcCC
Confidence 99999874 35555577788888643
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.6e-34 Score=258.46 Aligned_cols=252 Identities=18% Similarity=0.270 Sum_probs=213.6
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.+++|++++..+++++.| +.|++|++.+++....+. |...|.+++|+|++.++++ |+.|+
T Consensus 17 ~~~~-gh~~~v~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~ 90 (312)
T 4ery_A 17 FTLA-GHTKAVSSVKFSPNGEWLASSSAD-----KLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK 90 (312)
T ss_dssp EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEc-ccCCcEEEEEECCCCCEEEEeeCC-----CeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence 4554 799999999999999999999999 999999999999888888 9999999999999998884 89999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATS 276 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (432)
+||+++++.+..+..|...+.+++|+|+++.++ + |+.|+.|++||++++ ....+..|...|.+++|+|++++|+++
T Consensus 91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--s-~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV--S-GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEE--E-EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE--E-EeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 999999999999999999999999999987543 3 348999999999875 456778899999999999999999999
Q ss_pred cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 277 STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 277 ~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
+.|+. |++||+++++.+..+... +...+..++|+|++++|++++.||.|++||+++++.
T Consensus 168 ~~d~~-i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------------- 226 (312)
T 4ery_A 168 SYDGL-CRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC------------------- 226 (312)
T ss_dssp ETTSC-EEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-------------------
T ss_pred eCCCc-EEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-------------------
Confidence 99999 999999999988877643 557899999999999999999999999999988763
Q ss_pred eeEeecccceeecceeeEEEEecCCCce--EEEE-ccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPY--IVAF-GHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
+..+.+|...+. ...| .+++++|++|+.||.|++|++.. ++.+..++
T Consensus 227 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~--~~~~~~~~ 276 (312)
T 4ery_A 227 ----------------LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT--KEIVQKLQ 276 (312)
T ss_dssp ----------------EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT--CCEEEEEC
T ss_pred ----------------EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC--chhhhhhh
Confidence 223444543322 2234 46788999999999999999744 44444444
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.7e-35 Score=267.41 Aligned_cols=278 Identities=14% Similarity=0.069 Sum_probs=228.5
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCee-EEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFRE-IFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLN 156 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~ 156 (432)
+...|.+.|++++|+|++++|++++ ++.|+||++...+. .....+. +|...|.+++|++++. .+++++.| +
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d-----g 79 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQ-----G 79 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETT-----S
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-ecCCceEEEEECCCCCcEEEEEcCC-----C
Confidence 4568999999999999999999988 55599999987661 1112222 5888999999999999 99999988 9
Q ss_pred eEEEEeC-CCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCC---------CeeeEEEeeccCCcceEE
Q 014007 157 KVMIWDD-HQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFAD---------LKLLHQIETIANPKGLCA 221 (432)
Q Consensus 157 ~v~iwd~-~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~ 221 (432)
.|++||+ .+++...... |...|.+++|+| +.++++ |+.|++||+++ ++++..+. +...+..++
T Consensus 80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 80 EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 9999999 8887655555 889999999999 776663 89999999987 66666665 777888899
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccC-Cce---eeeeccCCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCC-----
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDG----- 291 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~---~~~~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~----- 291 (432)
|++++ + ++ ++.++.|++||++. ... .....|...|.+++|+| ++++|++++.||. |++||+...
T Consensus 158 ~~~~~--l--~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 158 TNSSR--L--IV-GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYN 231 (342)
T ss_dssp ECSSE--E--EE-EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTT
T ss_pred ecCCc--E--EE-EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCcccc
Confidence 98876 3 32 34799999999987 332 24457888999999999 9999999999999 999999887
Q ss_pred -ceEEEEEeCC-------CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 292 -TLLQEVRRGA-------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 292 -~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
+....+..+. |...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------- 285 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-------------------------- 285 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE--------------------------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH--------------------------
Confidence 7788887642 134899999999999999999999999999988763
Q ss_pred cceeecceeeEEEEec-CCCceEEEEccCCCEEEEEecCCe-EEEEE
Q 014007 364 PKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMDGS-FYRCQ 408 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~-v~iw~ 408 (432)
+..+..| .+.|.+++ |++++|++++.||. .+.|.
T Consensus 286 ---------~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 286 ---------IKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---------EEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ---------hhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 3345667 88899999 99999999999998 55544
No 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.4e-34 Score=269.63 Aligned_cols=276 Identities=17% Similarity=0.233 Sum_probs=225.9
Q ss_pred cccCCCCCCCe-EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 78 ESTSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 78 ~~~~~~~~~~v-~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
.....+|...| .++.+ ++.+|++|+ |+.|++||+.+++.. ..+. +|...|.++.|++++ .+++++.|
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~--~~~~-~h~~~V~~l~~~~~~-~l~s~s~d----- 182 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--LQLS-GHDGGVWALKYAHGG-ILVSGSTD----- 182 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECSTT-EEEEEETT-----
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEE--EEEe-CCCcCEEEEEEcCCC-EEEEEeCC-----
Confidence 34567788775 66666 567899888 555999999888765 5565 799999999999988 78888888
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEec--CccEEEe---CCeEEEEEcCCCee-----------------------
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKL----------------------- 206 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i~i~d~~~~~~----------------------- 206 (432)
+.|++||+.+++.+..+. |...|.+++|++ ++.++++ |+.|++||+++++.
T Consensus 183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred CCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence 999999999999999998 999999999994 6677663 89999999987653
Q ss_pred eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 207 LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
+..+..|...+ .+++++++.++. |+.|+.|++||+++. .+..+.+|...|.+++|+|++++|++|+.|+. |++
T Consensus 263 ~~~~~~~~~~v--~~~~~~~~~l~~---~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~v 336 (464)
T 3v7d_B 263 VGVLRGHMASV--RTVSGHGNIVVS---GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRI 336 (464)
T ss_dssp EEEECCCSSCE--EEEEEETTEEEE---EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEE
T ss_pred EEEccCccceE--EEEcCCCCEEEE---EeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEE
Confidence 33344454444 455777775443 348999999999885 45667889999999999999999999999999 999
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (432)
||+++++++..+.. |...|.+++|+ +++|++++.||.|++||+.+....
T Consensus 337 wd~~~~~~~~~~~~--h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~--------------------------- 385 (464)
T 3v7d_B 337 WDLENGELMYTLQG--HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--------------------------- 385 (464)
T ss_dssp EETTTTEEEEEECC--CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE---------------------------
T ss_pred EECCCCcEEEEEeC--CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee---------------------------
Confidence 99999999999875 66899999997 589999999999999999886521
Q ss_pred eeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
....+...+..++|++++++|++|+ ||.|++|++..
T Consensus 386 ---------~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~ 421 (464)
T 3v7d_B 386 ---------FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS 421 (464)
T ss_dssp ---------EEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred ---------eeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence 1123556788899999999999998 99999999854
No 62
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.7e-34 Score=260.65 Aligned_cols=250 Identities=15% Similarity=0.206 Sum_probs=211.5
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.+++|++++..+++++.| ++|++||..+++....+. +...|.+++|+|++.++++ |+.++
T Consensus 58 ~~l~-gH~~~V~~~~~s~d~~~l~s~s~D-----g~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 58 RTLK-GHGNKVLCMDWCKDKRRIVSSSQD-----GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp EEEE-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred EEec-CCCCeEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 4454 799999999999999999999999 999999999998888887 8889999999999999984 89999
Q ss_pred EEEcCCC------eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcC--
Q 014007 198 VYNFADL------KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQ-- 268 (432)
Q Consensus 198 i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp-- 268 (432)
+|++... .....+..|...+..++|++++..++. ++.|+.|++||++++. +..+.+|...|.+++|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t---~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT---ASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE---EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE---EeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 9998643 345667789999999999999876543 3479999999998854 567889999999999988
Q ss_pred CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC
Q 014007 269 DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD 348 (432)
Q Consensus 269 ~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 348 (432)
+|++|++|+.|+. |++||+++++++..+.. |...|.+++|+|++.+|++++.|++|++||++..+.+
T Consensus 209 ~g~~l~sgs~Dg~-v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~---------- 275 (354)
T 2pbi_B 209 TGNTFVSGGCDKK-AMVWDMRSGQCVQAFET--HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREV---------- 275 (354)
T ss_dssp SCCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE----------
T ss_pred CCCEEEEEeCCCe-EEEEECCCCcEEEEecC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE----------
Confidence 5789999999999 99999999999988875 6689999999999999999999999999999876521
Q ss_pred CCCCCCCceeEeecccceeecceeeEEEEec--CCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007 349 PTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV--EGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 420 (432)
..+..+ ...+.+++|+|++++|++|+.||.|++|++. +++.+..+
T Consensus 276 -------------------------~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~--~~~~~~~l 322 (354)
T 2pbi_B 276 -------------------------AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL--KGSRVSIL 322 (354)
T ss_dssp -------------------------EEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT--TCSEEEEE
T ss_pred -------------------------EEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC--CCceEEEE
Confidence 111111 2357899999999999999999999999974 34444443
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-35 Score=266.27 Aligned_cols=246 Identities=14% Similarity=0.177 Sum_probs=199.5
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEec--CccEEEe---CCeEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRR--DRIIVVL---EQKIFV 198 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i~i 198 (432)
+|...|.+++|++++..|++++.| ++|++||+.+++ .+..+. |...|.+++|++ ++.++++ |++|++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 799999999999999999999999 999999998774 456676 999999999986 3666663 999999
Q ss_pred EEcCCC--eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeeccCCceeEEEEcCC---
Q 014007 199 YNFADL--KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMAHDSRIACFALTQD--- 269 (432)
Q Consensus 199 ~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~~i~~~~~sp~--- 269 (432)
||++++ +....+..|...+..++|+|++...++++ |+.|+.|++||++... ...+.+|...|.+++|+|+
T Consensus 86 Wd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp ECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999886 35667778999999999999853334454 4589999999998752 2345689999999999997
Q ss_pred --------------CCEEEEEcCCCceEEEEECCCC---ceEEEEEeCCCcCceEEEEECCCC----CEEEEEeCCCeEE
Q 014007 270 --------------GQLLATSSTKGTLVRIFNTLDG---TLLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDKGTVH 328 (432)
Q Consensus 270 --------------~~~l~~~~~dg~~i~vwd~~~~---~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~dg~i~ 328 (432)
+++|++|+.|+. |++||++.. +++..+.. |...|.+++|+|++ ++|++++.||+|+
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las~s~D~~v~ 241 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIASCSQDGRVF 241 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEEEETTCEEE
T ss_pred ccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEEEcCCCeEE
Confidence 478999999999 999999765 34555553 77899999999987 8999999999999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
|||+.+..... +....+..|.+.|++++|+|++++|++++.||.|++|+
T Consensus 242 iw~~~~~~~~~-------------------------------~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 242 IWTCDDASSNT-------------------------------WSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp EEECSSTTCCC-------------------------------CBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred EEEccCccccc-------------------------------hhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 99998742100 00113456788999999999999999999999999999
Q ss_pred ecCC
Q 014007 409 FDPV 412 (432)
Q Consensus 409 ~~~~ 412 (432)
.+..
T Consensus 291 ~~~~ 294 (316)
T 3bg1_A 291 ESVD 294 (316)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 8653
No 64
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.5e-35 Score=263.75 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=195.3
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~ 155 (432)
....+|.+.|++++|+|+|++|++|+ |+.|+|||+.+++......+. +|...|.+++|++ ++..|++++.|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D----- 80 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYD----- 80 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETT-----
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECC-----
Confidence 45678999999999999999999998 555999999877655456676 7999999999975 47889999999
Q ss_pred CeEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCee---eEEEeeccCCcceEEEec
Q 014007 156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKL---LHQIETIANPKGLCAVSQ 224 (432)
Q Consensus 156 ~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~ 224 (432)
++|++||+.+++ .+..+. |...|.+++|+|+ +.++++ |+.|++||++.+.. ...+..|...+..++|+|
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 160 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECC
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEcc
Confidence 999999998874 455565 8999999999997 667763 89999999987532 344556778888999998
Q ss_pred CCC---------------cEEEEeecCCCCcEEEEEccCC----ceeeeeccCCceeEEEEcCCC----CEEEEEcCCCc
Q 014007 225 GVG---------------SLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDSRIACFALTQDG----QLLATSSTKGT 281 (432)
Q Consensus 225 ~~~---------------~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~ 281 (432)
+.. ..++++ |+.|+.|++||++.. ....+.+|...|.+++|+|++ ++|++++.|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 161 AVVPGSLIDHPSGQKPNYIKRFAS-GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp CCCC------CCSCCCCCCCBEEC-CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccCCccccccccccCccccceEEE-ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCe
Confidence 731 123454 568999999999753 345678999999999999986 88999999999
Q ss_pred eEEEEECCCC---c-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 282 LVRIFNTLDG---T-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 282 ~i~vwd~~~~---~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
|++||+.+. + ....+.. |...|.+++|+|++++|++++.||+|+||+...
T Consensus 240 -v~iw~~~~~~~~~~~~~~~~~--~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 240 -VFIWTCDDASSNTWSPKLLHK--FNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp -EEEEECSSTTCCCCBCCEEEE--CSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred -EEEEEccCccccchhhhhhhc--CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 999998763 1 1223333 568999999999999999999999999999864
No 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.8e-34 Score=304.46 Aligned_cols=284 Identities=15% Similarity=0.216 Sum_probs=246.7
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|.+.|++++|+|+|++|++|+. +.|+||++.+++.. ..+. +|...|.+++|++++..+++++.| +
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~--~~~~-~h~~~v~~~~~s~~~~~l~s~~~d-----~ 679 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL--LDIK-AHEDEVLCCAFSSDDSYIATCSAD-----K 679 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----S
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEE--EEec-cCCCCEEEEEEecCCCEEEEEeCC-----C
Confidence 3456789999999999999999999985 45999999888766 4555 799999999999999999999999 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
.|++||+.+++.+..+. |...|.+++|+++ +.++++ |+.|++||+.+++.+..+..|...+..++|+|+++.++
T Consensus 680 ~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~ 759 (1249)
T 3sfz_A 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLA 759 (1249)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEE
Confidence 99999999999999998 9999999999994 445553 89999999999999999999999999999999998544
Q ss_pred EEeecCCCCcEEEEEccCCceee-ee-------------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKF-IM-------------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~-~~-------------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
. ++.||.|++||+.+..... +. .+...+.+++|+|+|+++++++ ++. |.+||+.++..+..
T Consensus 760 s---~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~-v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 760 S---CSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNK-VLLFDIHTSGLLAE 834 (1249)
T ss_dssp E---EESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTE-EEEEETTTCCEEEE
T ss_pred E---EECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCc-EEEEEecCCCceeE
Confidence 3 3489999999998754322 21 1234788999999999999887 567 99999999999988
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF 376 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (432)
+... |...|.+++|+|+++++++++.||.|++||+.++.. +..+
T Consensus 835 ~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~-----------------------------------~~~~ 878 (1249)
T 3sfz_A 835 IHTG-HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK-----------------------------------VADC 878 (1249)
T ss_dssp EECS-SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE-----------------------------------EEEE
T ss_pred EcCC-CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce-----------------------------------eeec
Confidence 8754 778999999999999999999999999999988652 4457
Q ss_pred EecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 377 RLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 377 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
.+|.+.|.+++|+|++++|++++.||.|++|++.
T Consensus 879 ~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred CCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 7899999999999999999999999999999975
No 66
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.7e-34 Score=264.63 Aligned_cols=239 Identities=18% Similarity=0.241 Sum_probs=206.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
+...|++++|+|+|++|++|+ |+.|+|||+.+.+.. ..+. +|...|.++.|++++..+++++.| +.|++||
T Consensus 122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~-~h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd 193 (393)
T 1erj_A 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQ-GHEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWD 193 (393)
T ss_dssp CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEECTTSSEEEEEETT-----SEEEEEE
T ss_pred CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEc-cCCCCEEEEEEcCCCCEEEEecCC-----CcEEEEE
Confidence 344699999999999999998 555999999887665 4555 789999999999999999999999 9999999
Q ss_pred CCCCceeEEeecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEE-------eeccCCcceEEEecCCCcEEE
Q 014007 163 DHQSRCIGELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI-------ETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 231 (432)
+.++++...+.+...+.+++|+| ++.++++ |+.|++||+++++.+..+ ..|...+..++|+|+++.++
T Consensus 194 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~- 272 (393)
T 1erj_A 194 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV- 272 (393)
T ss_dssp TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-
T ss_pred CCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE-
Confidence 99999988888888999999999 8888874 899999999998877766 46778899999999997553
Q ss_pred EeecCCCCcEEEEEccCC-------------ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 232 VCPGLQKGQVRVEHYASK-------------RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~-------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
+ |+.|+.|++||++.. ....+.+|...|.+++|+|++.+|++|+.|+. |++||+++++++..+.
T Consensus 273 -s-~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 273 -S-GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp -E-EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred -E-EeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEEC
Confidence 3 448999999999752 23456789999999999999999999999999 9999999999999888
Q ss_pred eCCCcCceEEEEECC------CCCEEEEEeCCCeEEEEEecCCC
Q 014007 299 RGADRAEIYSLAFSS------NAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 299 ~~~~~~~i~~~~~s~------~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+ |...|.+++|++ ++.+|++|+.||+|+||++...+
T Consensus 350 ~--h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 350 G--HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp C--CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred C--CCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 5 668999999886 68899999999999999997643
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-34 Score=281.86 Aligned_cols=285 Identities=11% Similarity=0.184 Sum_probs=229.0
Q ss_pred ccCCCCCC---CeEEEEEcCC-CCEEEEEc-CCcEEEEEcCCCeeEEEeeccc---CcceeEEEEeeeCCeEEEecCCCC
Q 014007 79 STSSSPPP---TLLHISFNQD-HGCFAAGT-DHGFRIYNCDPFREIFRRDFER---GGGIGVVEMLFRCNILALVGGGPD 150 (432)
Q Consensus 79 ~~~~~~~~---~v~~~~~s~~-~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~s~~~d 150 (432)
.....|.. .|++++|+|+ +++|++++ ++.|++||+.+++.. ..+.. .|...+.++.|+ ++..+++++.|
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 273 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--KYIEDDQEPVQGGIFALSWL-DSQKFATVGAD 273 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE--EECCBTTBCCCSCEEEEEES-SSSEEEEEETT
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe--EEecccccccCCceEEEEEc-CCCEEEEEcCC
Confidence 44566888 9999999999 99999888 555999999887766 44422 588899999999 99999999988
Q ss_pred CCCCCCeEEEEeCCCCceeEEeecC-----CceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEE
Q 014007 151 PQYPLNKVMIWDDHQSRCIGELSFR-----SEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 222 (432)
+.|++||+.+++.+..+... ..+.++.|. ++.+++ .|+.|++||+.+++.+..+..|...+..++|
T Consensus 274 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 274 -----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV 347 (615)
T ss_dssp -----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET
T ss_pred -----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe
Confidence 99999999999988888733 677888886 555555 2889999999888777777666555544443
Q ss_pred ecC---------------------------------CCcE----------------------------------------
Q 014007 223 SQG---------------------------------VGSL---------------------------------------- 229 (432)
Q Consensus 223 ~~~---------------------------------~~~~---------------------------------------- 229 (432)
|+ ++.+
T Consensus 348 -~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 426 (615)
T 1pgu_A 348 -NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTND 426 (615)
T ss_dssp -TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETT
T ss_pred -cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCC
Confidence 22 1111
Q ss_pred -------------------------------EEEeecCC-CCcEEEEEccCCce--eeeeccCCceeEEEEcCCCCEEEE
Q 014007 230 -------------------------------VLVCPGLQ-KGQVRVEHYASKRT--KFIMAHDSRIACFALTQDGQLLAT 275 (432)
Q Consensus 230 -------------------------------~~~~~g~~-d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~sp~~~~l~~ 275 (432)
++++ ++. |+.|++||+..... ..+..|...|.+++|+|++++|++
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 505 (615)
T 1pgu_A 427 DDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV-GLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 505 (615)
T ss_dssp SEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE-EETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE
T ss_pred CceEEEeccCCceeeecccCCCceEEEEcCCEEEE-eecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE
Confidence 1121 224 77788888777555 556789999999999999999999
Q ss_pred EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC----------CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC
Q 014007 276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS----------NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS 345 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (432)
++.|+. |++||+.+++++..+... |...|++++|+| ++++|++++.||.|++||+.++...
T Consensus 506 ~~~dg~-i~iw~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------- 576 (615)
T 1pgu_A 506 GDVMGK-ILLYDLQSREVKTSRWAF-RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI------- 576 (615)
T ss_dssp EETTSC-EEEEETTTTEEEECCSCC-CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC-------
T ss_pred cCCCCe-EEEeeCCCCcceeEeecC-CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee-------
Confidence 999999 999999999998877642 668999999999 9999999999999999999887311
Q ss_pred CCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|.+.|++++|+|+++ |++++.||.|++|+++.
T Consensus 577 ---------------------------~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 577 ---------------------------IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ---------------------------EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred ---------------------------chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 334567889999999999999 99999999999999864
No 68
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=6.7e-34 Score=267.94 Aligned_cols=281 Identities=14% Similarity=0.261 Sum_probs=226.1
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
....|...|+++.| ++++|++|+ |+.|++||+.+++.. ..+. +|...|.++.| ++..+++++.| |.|
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--~~~~-~h~~~v~~l~~--~~~~l~sg~~d-----g~i 195 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--RILT-GHTGSVLCLQY--DERVIITGSSD-----STV 195 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--EEEC-CCSSCEEEEEC--CSSEEEEEETT-----SCE
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--EEEc-CCCCcEEEEEE--CCCEEEEEcCC-----CeE
Confidence 34567788999887 788999988 555999999887765 4555 78899999999 56688888888 999
Q ss_pred EEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeee---EEEeeccCCcceEEEecCCCcEEEEe
Q 014007 159 MIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLL---HQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
++||+.+++.+..+. |...|.+++|+++....+ .|+.|++||+.+++.. ..+..|...+..+++ +++.+ ++
T Consensus 196 ~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l--~s 271 (435)
T 1p22_A 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI--VS 271 (435)
T ss_dssp EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEE--EE
T ss_pred EEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEE--EE
Confidence 999999999999988 899999999985522222 3899999999887655 566677888877777 55543 33
Q ss_pred ecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 234 PGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
|+.||.|++||+++. .+..+.+|...|.++.| ++++|++|+.||. |++||+++++++..+.. |...|.+++|
T Consensus 272 -~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~- 344 (435)
T 1p22_A 272 -ASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF- 344 (435)
T ss_dssp -EETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC-
T ss_pred -EeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe-
Confidence 347999999999885 45667889999999999 5789999999999 99999999999999885 6689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
++.+|++|+.||.|++||+.+++..... .....+..+..|.+.|.+++| ++
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------------------~~~~~~~~~~~h~~~v~~l~~--~~ 395 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAP--------------------------AGTLCLRTLVEHSGRVFRLQF--DE 395 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSC--------------------------TTTTEEEEECCCSSCCCCEEE--CS
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCcccc--------------------------ccchheeeccCCCCCeEEEEe--CC
Confidence 7899999999999999999876522110 011125567889999999999 78
Q ss_pred CEEEEEecCCeEEEEEecCC
Q 014007 393 NTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~~~~~ 412 (432)
++|++|+.||.|++|++...
T Consensus 396 ~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 396 FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SCEEECCSSSEEEEEC----
T ss_pred CEEEEEeCCCEEEEEECCCC
Confidence 99999999999999998664
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-34 Score=280.98 Aligned_cols=280 Identities=14% Similarity=0.217 Sum_probs=236.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCC----eeEEEeecccCccee-EEEEeeeC--CeEEEecCCCCCCCC
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPF----REIFRRDFERGGGIG-VVEMLFRC--NILALVGGGPDPQYP 154 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~----~~~~~~~~~~~~~~~-v~~~~~~~--~~~~~~s~~~d~~~~ 154 (432)
..|.+.|++++|+|+|++|++++++.|+||+++++ +.. ..+. +|... |.+++|+| ++..+++++.|
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~--~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~d---- 87 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV--VQFT-GHGSSVVTTVKFSPIKGSQYLCSGDES---- 87 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE--EEEC-TTTTSCEEEEEECSSTTCCEEEEEETT----
T ss_pred CCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccc--eEEe-cCCCceEEEEEECcCCCCCEEEEecCC----
Confidence 46789999999999999999999878999999876 444 4554 68888 99999999 99999999999
Q ss_pred CCeEEEEeCCCC--------ceeEEee-cCCceEEEEEecCccEEEe---C----CeEEEEEcCCCeeeEEEeeccCCcc
Q 014007 155 LNKVMIWDDHQS--------RCIGELS-FRSEVRSVKLRRDRIIVVL---E----QKIFVYNFADLKLLHQIETIANPKG 218 (432)
Q Consensus 155 ~~~v~iwd~~~~--------~~~~~~~-~~~~v~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~~~~~~~~~~ 218 (432)
+.|++||+.++ +.+..+. |...|.+++|+|++.++++ + +.|++|| .++.+..+..|...+.
T Consensus 88 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 88 -GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp -SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred -CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 99999999755 5666676 8999999999999998884 3 4777777 6678888889999999
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCC---ceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCce
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDS---RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTL 293 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~---~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~ 293 (432)
.++|+|+++..+++ ++.|+.|++||+.... ...+..|.. .|.+++|+|+ +++|++++.|+. |++||+++++.
T Consensus 165 ~~~~~~~~~~~l~~--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~ 241 (615)
T 1pgu_A 165 ACHLKQSRPMRSMT--VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF 241 (615)
T ss_dssp EEEECSSSSCEEEE--EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred EEEECCCCCcEEEE--EeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence 99999999854433 3489999999998844 456778988 9999999999 999999999999 99999999999
Q ss_pred EEEEEeC--CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 294 LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 294 ~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
+..+... .|...|.+++|+ ++++|++++.||.|++||+++++.
T Consensus 242 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~---------------------------------- 286 (615)
T 1pgu_A 242 LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC---------------------------------- 286 (615)
T ss_dssp EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE----------------------------------
T ss_pred eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE----------------------------------
Confidence 9888320 267899999999 999999999999999999998763
Q ss_pred eeEEEEec----CCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 372 SVAQFRLV----EGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 372 ~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+..+ ...+.++.|+ ++++|++++.||.|++|++..
T Consensus 287 -~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 287 -VQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp -EEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred -EEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence 2234444 3567788885 899999999999999999754
No 70
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.2e-34 Score=256.81 Aligned_cols=242 Identities=18% Similarity=0.279 Sum_probs=189.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCC-----eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 83 SPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPF-----REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.|...|++++|+|++++|++|+ |+.|+||++... .......+. +|...|.+++|+|++.+|++++.| +
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D-----~ 129 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRD-----K 129 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETT-----S
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCC-----C
Confidence 4999999999999999999998 556999998532 112234554 789999999999999999999999 9
Q ss_pred eEEEEeCCCC----ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC--eeeEEEeeccCCcceEEEecCC
Q 014007 157 KVMIWDDHQS----RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL--KLLHQIETIANPKGLCAVSQGV 226 (432)
Q Consensus 157 ~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~ 226 (432)
+|++||+... +++..+. |...|.+++|+|++.++++ |++|++||..++ +++..+.+|...+..++|+|++
T Consensus 130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 209 (330)
T 2hes_X 130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE 209 (330)
T ss_dssp CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS
T ss_pred EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC
Confidence 9999999432 4566676 8999999999999998884 899999998776 6778888999999999999996
Q ss_pred CcEEEEeecCCCCcEEEEEccCC---------ceeeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--E
Q 014007 227 GSLVLVCPGLQKGQVRVEHYASK---------RTKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--L 294 (432)
Q Consensus 227 ~~~~~~~~g~~d~~i~i~d~~~~---------~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~ 294 (432)
....+++ |+.|+.|++||++.. ....+.. |...|.+++|++++ +|++++.|+. |++||..+++. .
T Consensus 210 ~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 210 GVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEWKVF 286 (330)
T ss_dssp SSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEEEEE
T ss_pred CeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCceEEE
Confidence 5445554 458999999998763 1223333 89999999999765 7999999999 99999987742 2
Q ss_pred EEEEeCCCcC-ceEEEEECC--CCCEEEEEeCCCeEEEEEecC
Q 014007 295 QEVRRGADRA-EIYSLAFSS--NAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 295 ~~~~~~~~~~-~i~~~~~s~--~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.... ..|.. .|.+++|+| ++++|++|+.||+|+|||+++
T Consensus 287 ~~~~-~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 287 AKRA-LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEES-CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eccc-cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 2221 23555 899999999 789999999999999999875
No 71
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-34 Score=288.17 Aligned_cols=239 Identities=10% Similarity=0.105 Sum_probs=189.9
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
...+|...|++++|+|++++||+|+.+ .|+||+....+.. ..+ .|...|.+++|++ +.++++++.| ++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~--~~~--~~~~~V~~l~fsp-g~~L~S~s~D-----~~v 81 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV--IKL--EDRSAIKEMRFVK-GIYLVVINAK-----DTV 81 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE--EEC--SSCCCEEEEEEET-TTEEEEEETT-----CEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE--EEc--CCCCCEEEEEEcC-CCEEEEEECc-----CeE
Confidence 345789999999999999999999954 5999998776544 334 3778999999999 6689999988 999
Q ss_pred EEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeee-----------EEEeeccCCcceEEEec
Q 014007 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLL-----------HQIETIANPKGLCAVSQ 224 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~-----------~~~~~~~~~~~~~~~~~ 224 (432)
++||+.+++.+..+.+...|.+++|+|++.++++ ||.|++||+++++.. ..+..|...|.+++|+|
T Consensus 82 ~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 9999999999999988899999999999999884 899999999988753 12345778899999999
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCCce-eeeecc------------------CCceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMAH------------------DSRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~------------------~~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
++...+++ |+.|+.| +||++.+.. ..+..| ...|.+++|+|+|++|++++.|+. |++
T Consensus 162 ~~~~~l~~--g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~l 237 (902)
T 2oaj_A 162 RDIGTVLI--SYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVF 237 (902)
T ss_dssp TEEEEEEE--ECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEE
T ss_pred CCCCEEEE--EeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEE
Confidence 75444332 4589999 999998553 334433 578999999999999999999999 999
Q ss_pred EECCCCceEEEEEe-----C-----------CCcCceEEEEEC----CCC-CEEEEEeCC-----CeEEEEEe
Q 014007 286 FNTLDGTLLQEVRR-----G-----------ADRAEIYSLAFS----SNA-QWLAVSSDK-----GTVHVFNL 332 (432)
Q Consensus 286 wd~~~~~~~~~~~~-----~-----------~~~~~i~~~~~s----~~~-~~l~~~~~d-----g~i~iwd~ 332 (432)
||+++++++..... + .+...|.+++|+ |++ .+|++|+.| +.+++|++
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 99999988754211 1 123479999995 443 466677554 26777774
No 72
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=5.1e-33 Score=253.44 Aligned_cols=242 Identities=12% Similarity=0.177 Sum_probs=200.9
Q ss_pred eecccCcceeEEEEee-----eC-CeEEEecCCCCCCCCCCeEEEEeCCCC-------ceeEEee-cCCceEEEEEecCc
Q 014007 122 RDFERGGGIGVVEMLF-----RC-NILALVGGGPDPQYPLNKVMIWDDHQS-------RCIGELS-FRSEVRSVKLRRDR 187 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~-----~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~-------~~~~~~~-~~~~v~~~~~~~~~ 187 (432)
..+. +|...|.++.| ++ ++..+++++.| ++|++||+.++ .....+. |...|.+++|+|++
T Consensus 15 ~~l~-gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D-----~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~ 88 (343)
T 2xzm_R 15 GILE-GHSDWVTSIVAGFSQKENEDSPVLISGSRD-----KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN 88 (343)
T ss_dssp EEEE-CCSSCEEEEEECCCSSTTCCCCEEEEEETT-----SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST
T ss_pred eeec-cchhhhhheeeEEEeecCCCCCEEEEEcCC-----CEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC
Confidence 4565 79999999998 66 88999999999 99999998753 3455666 89999999999999
Q ss_pred cEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee---ccCCce
Q 014007 188 IIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM---AHDSRI 261 (432)
Q Consensus 188 ~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~~~~i 261 (432)
.++++ |++|++||+++++.+..+..|...+..++|+|+++.++ + ++.|+.|++||+......... .|...|
T Consensus 89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~--s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL--S-AGAEREIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEE--E-EETTSCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEE--E-EcCCCEEEEEeccCCceeeeecccCCCcee
Confidence 98874 89999999999999999999999999999999998554 3 348999999999865444433 788999
Q ss_pred eEEEEcCCC----------CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 262 ACFALTQDG----------QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 262 ~~~~~sp~~----------~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
.+++|+|++ .+|++++.|+. |++|| .+.+....+.. |...|.+++|+|+|++|++|+.||.|++||
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~iwd-~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGR-LKVWN-TNFQIRYTFKA--HESNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETTSE-EEEEE-TTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eeeeeccccccccccCCCCCEEEEEcCCCE-EEEEc-CCCceeEEEcC--ccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999999987 78999999999 99999 56667777774 668999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.+.... ...+ .+...|.+++|+|++++|++ +.|+.|++|++..
T Consensus 242 ~~~~~~~----------------------------------~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 242 ILNLTYP----------------------------------QREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMT 285 (343)
T ss_dssp SSCCSSC----------------------------------SEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEEEESSS
T ss_pred CCCCccc----------------------------------ceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEEEEeCC
Confidence 9544311 1111 24456999999999988765 5688899999865
Q ss_pred C
Q 014007 412 V 412 (432)
Q Consensus 412 ~ 412 (432)
.
T Consensus 286 ~ 286 (343)
T 2xzm_R 286 Q 286 (343)
T ss_dssp C
T ss_pred C
Confidence 4
No 73
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.3e-34 Score=267.65 Aligned_cols=250 Identities=12% Similarity=0.179 Sum_probs=206.6
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.++.|+|++..+++++.| ++|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|+
T Consensus 60 ~~l~-gH~~~V~~~~~sp~~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 60 RTLQ-GHSGKVYSLDWTPEKNWIVSASQD-----GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp EEEC-CCSSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred eccc-ccccEEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 5665 899999999999999999999999 999999999999999888 9999999999999999984 89999
Q ss_pred EEEcCCCe-------eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-ee-----eccCCceeEE
Q 014007 198 VYNFADLK-------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FI-----MAHDSRIACF 264 (432)
Q Consensus 198 i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~-----~~~~~~i~~~ 264 (432)
+||+.+.. ....+.+|...+..+.|.|++...++. |+.|+.|++||+.++... .+ .+|...|.++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s--~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~ 211 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT--GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE--ECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE--ECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEE
Confidence 99987532 344567888889999999987665433 458999999999985543 33 5789999999
Q ss_pred EEcC-CCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCC
Q 014007 265 ALTQ-DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSE 342 (432)
Q Consensus 265 ~~sp-~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 342 (432)
+|++ ++++|++|+.|+. |++||++ .++.+..+.+ |...|.+++|+|++++|++|+.||+|++||+++++.+....
T Consensus 212 ~~~~~~~~~l~sgs~D~~-v~~wd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~ 288 (380)
T 3iz6_a 212 SINSLNANMFISGSCDTT-VRLWDLRITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN 288 (380)
T ss_dssp EECSSSCCEEEEEETTSC-EEEEETTTTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred EeecCCCCEEEEEECCCe-EEEEECCCCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence 9987 8899999999999 9999998 4577777764 67899999999999999999999999999999876332110
Q ss_pred CCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 343 PRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
.+. . ....+...|++++|+|+|++|++|+.||.|++|++.
T Consensus 289 ~~~----------------------~------~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 289 REP----------------------D------RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp CCC----------------------S------SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred ccc----------------------c------ccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 000 0 000122358999999999999999999999999874
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.5e-33 Score=256.92 Aligned_cols=288 Identities=11% Similarity=0.107 Sum_probs=204.5
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCee--EEEeecccCcceeEEEEeeeC--CeEEEecCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFRE--IFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQ 152 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~ 152 (432)
+....+|.+.|++++|+|++++|++|+.++ |+||++.+... .....+. +|...|.+++|++ ++..+++++.|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~d-- 80 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYD-- 80 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETT--
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCC--
Confidence 456788999999999999999999998554 99999986532 2334554 7899999999998 58899999998
Q ss_pred CCCCeEEEEeCCCC---------ceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCeeeEEEe------
Q 014007 153 YPLNKVMIWDDHQS---------RCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLKLLHQIE------ 211 (432)
Q Consensus 153 ~~~~~v~iwd~~~~---------~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~------ 211 (432)
+.|++||+.++ +.+..+. |...|.+++|+|+ +.++++ |+.|++||+++++.+..+.
T Consensus 81 ---g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 81 ---KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp ---SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred ---CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 99999999887 4466666 8999999999998 887773 8999999998876544332
Q ss_pred -------eccCCcceEEEecC---CCcEEEEeecCCCCcEEEEEccCCc---eeeeeccCCceeEEEEcCCC----CEEE
Q 014007 212 -------TIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKR---TKFIMAHDSRIACFALTQDG----QLLA 274 (432)
Q Consensus 212 -------~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~sp~~----~~l~ 274 (432)
.+...+.+++|+|+ +..+ ++ ++.++.+.+|+..... ...+.+|...|++++|+|++ ++|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l--~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKL--AV-SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEE--EE-EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEE--EE-ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 35567788999997 5533 32 3378888888777655 45567899999999999998 8999
Q ss_pred EEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC----eEEEEEecCCCCCCCCCCCCCCCCC
Q 014007 275 TSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG----TVHVFNLKVNSGSARSEPRSTSDPT 350 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (432)
+++.||. |++||++++........ .........+++....++.+..++ .+.+|+....
T Consensus 235 s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 296 (351)
T 3f3f_A 235 TGCKDGR-IRIFKITEKLSPLASEE--SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV--------------- 296 (351)
T ss_dssp EEETTSC-EEEEEEEECC-----------------------------------------CCSEEE---------------
T ss_pred EEcCCCe-EEEEeCCCCcCccccCC--cccceeccCCCcccccccccccccccceeeeecccccc---------------
Confidence 9999999 99999988766544432 223444445555555554444322 2222222221
Q ss_pred CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
..+..+.+|.+.|++++|+|++++|++++.||.|++|+++..
T Consensus 297 --------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 297 --------------------ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp --------------------EEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred --------------------cEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 124567789999999999999999999999999999999653
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.7e-32 Score=259.24 Aligned_cols=276 Identities=20% Similarity=0.271 Sum_probs=230.1
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.....+|...|.+++|+ +.+|++|+ |+.|++||+.+++.. ..+. +|...|.++.++++ .+++++.| +
T Consensus 152 ~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~--~l~s~s~d-----g 219 (445)
T 2ovr_B 152 LRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI--HTLY-GHTSTVRCMHLHEK--RVVSGSRD-----A 219 (445)
T ss_dssp EEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred EEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE--EEEC-CCCCcEEEEEecCC--EEEEEeCC-----C
Confidence 45667899999999998 56888887 555999999888765 4554 68889999999765 47777777 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
.|++||+.+++.+..+. |...|.++++ ++.+++ .|+.|++||+++++.+..+..|...+..+.+ ++..+ +
T Consensus 220 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l--~ 293 (445)
T 2ovr_B 220 TLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHV--V 293 (445)
T ss_dssp EEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEE--E
T ss_pred EEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEE--E
Confidence 99999999999998888 8999999999 455555 2899999999999999999988888888877 55543 3
Q ss_pred eecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC-CcCceEEEE
Q 014007 233 CPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-DRAEIYSLA 310 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-~~~~i~~~~ 310 (432)
+ ++.|+.|++||++++ .+..+.+|...+.++.+ ++++|++|+.||. |++||+++++++..+..+. |...|.+++
T Consensus 294 ~-~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 369 (445)
T 2ovr_B 294 S-GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369 (445)
T ss_dssp E-EETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred E-EeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence 3 347999999999885 45667889999998887 5679999999999 9999999999999887532 668899999
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE-----EecCCCceE
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF-----RLVEGSPYI 385 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~ 385 (432)
|+ +++|++++.||.|++||+.+++.+ ..+ ..|.+.|++
T Consensus 370 ~~--~~~l~s~~~dg~v~iwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~v~~ 412 (445)
T 2ovr_B 370 FN--KNFVITSSDDGTVKLWDLKTGEFI-----------------------------------RNLVTLESGGSGGVVWR 412 (445)
T ss_dssp EC--SSEEEEEETTSEEEEEETTTCCEE-----------------------------------EEEEECTTGGGTCEEEE
T ss_pred EC--CCEEEEEeCCCeEEEEECCCCcee-----------------------------------eeeeccccCCCCceEEE
Confidence 95 589999999999999999988732 122 256788999
Q ss_pred EEEccCCCEEEEEecCCe----EEEEEecCC
Q 014007 386 VAFGHQKNTVVILGMDGS----FYRCQFDPV 412 (432)
Q Consensus 386 ~~~s~~~~~l~~~~~dg~----v~iw~~~~~ 412 (432)
++|+|++.+|++|+.||. |++|+++.+
T Consensus 413 ~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 413 IRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999999999997 999999765
No 76
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-33 Score=287.07 Aligned_cols=300 Identities=13% Similarity=0.128 Sum_probs=212.8
Q ss_pred cCCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCCeeEEEeecc-----------------cCcceeEEEEeeeCC
Q 014007 80 TSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPFREIFRRDFE-----------------RGGGIGVVEMLFRCN 140 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~-~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~-----------------~~~~~~v~~~~~~~~ 140 (432)
...+|...|++++|+|+ +..|++|++++ | |||+.+.+... .+. .+|...|.+++|+|+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd 222 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQ--SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN 222 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEE--EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEE--EEecccCCcCCCcccccccccccCCCeEEEEEcCC
Confidence 34679999999999996 46788888555 8 99998877653 332 123577999999999
Q ss_pred eEEEecCCCCCCCCCCeEEEEeCCCCceeEE--ee----c-------------CCceEEEEEe----cCc-cEEEe---C
Q 014007 141 ILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--LS----F-------------RSEVRSVKLR----RDR-IIVVL---E 193 (432)
Q Consensus 141 ~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~~----~-------------~~~v~~~~~~----~~~-~~~~~---d 193 (432)
+..+++++.| +.|++||+.+++++.. +. | ...|.+++|+ |++ .++++ +
T Consensus 223 g~~lasgs~D-----g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 223 SLHIITIHED-----NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp SSEEEEEETT-----CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred CCEEEEEECC-----CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999999 9999999999887653 21 2 3468889985 332 33332 1
Q ss_pred -----CeEEEEE--------------------------------------------------------------------
Q 014007 194 -----QKIFVYN-------------------------------------------------------------------- 200 (432)
Q Consensus 194 -----~~i~i~d-------------------------------------------------------------------- 200 (432)
..+.+|+
T Consensus 298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~ 377 (902)
T 2oaj_A 298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIE 377 (902)
T ss_dssp TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEE
T ss_pred CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEE
Confidence 1455554
Q ss_pred ---cCCCeeeEE-----------------------------------------EeeccCCcceEEEecCCCcEEEEeecC
Q 014007 201 ---FADLKLLHQ-----------------------------------------IETIANPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 201 ---~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
+.++..... +.+|...+..++|+|+++ ++++ |+
T Consensus 378 ~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~--~laS-gs 454 (902)
T 2oaj_A 378 TMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGT--AFIT-GH 454 (902)
T ss_dssp EEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEE--EEEE-EE
T ss_pred EEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCc--EEEE-ec
Confidence 322211100 001111122234455554 3443 45
Q ss_pred CCCcEEEEEccCCcee---ee---------eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc------------
Q 014007 237 QKGQVRVEHYASKRTK---FI---------MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT------------ 292 (432)
Q Consensus 237 ~d~~i~i~d~~~~~~~---~~---------~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~------------ 292 (432)
.|+.|++||+..+.+. .+ .+|...|.+++|+|+|++||+|+.||+ |+|||+.+++
T Consensus 455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~ 533 (902)
T 2oaj_A 455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGD 533 (902)
T ss_dssp TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC-----------
T ss_pred CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCcc
Confidence 8999999999875432 11 178899999999999999999999999 9999997663
Q ss_pred ---------------------------------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 293 ---------------------------------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 293 ---------------------------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
++..+.. |.+.|++++||||| +||+|+.|++|+|||+++...+.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~ 610 (902)
T 2oaj_A 534 LEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIY 610 (902)
T ss_dssp ----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEE
T ss_pred cceeeeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEE
Confidence 3455553 77899999999999 99999999999999987764110
Q ss_pred CCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE-ecCCCceEEEEc-----cCC---CEEEEEecCCeEEEEEec
Q 014007 340 RSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-LVEGSPYIVAFG-----HQK---NTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s-----~~~---~~l~~~~~dg~v~iw~~~ 410 (432)
.. .+..+. +|.+.|++++|+ ||| ++|++|+.||+|++|++.
T Consensus 611 --------------------~~----------~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 611 --------------------ME----------NIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp --------------------EE----------EGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred --------------------Ee----------ehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence 00 001132 788899999999 885 899999999999999996
Q ss_pred CC-CCCcceEeeecc
Q 014007 411 PV-NGGEMTQLEYNN 424 (432)
Q Consensus 411 ~~-~~~~~~~~~~~~ 424 (432)
+. +|+....+..+.
T Consensus 661 p~~~g~~~~~~~~~~ 675 (902)
T 2oaj_A 661 PASGGKFDVQLMDIT 675 (902)
T ss_dssp ECGGGCEEEEEEEEE
T ss_pred cCCCCcEEEEecCce
Confidence 65 444444554444
No 77
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.8e-33 Score=259.26 Aligned_cols=248 Identities=13% Similarity=0.158 Sum_probs=209.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...|...|++++|+|++++|++|+. +.|++|++.+.+.. ..+. +|...+.++.|++ ..+++++.| +.|+
T Consensus 130 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~--~~l~~~~~d-----g~i~ 199 (401)
T 4aez_A 130 ETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL--RTMA-GHQARVGCLSWNR--HVLSSGSRS-----GAIH 199 (401)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--EEEC-CCSSCEEEEEEET--TEEEEEETT-----SEEE
T ss_pred ecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEE--EEec-CCCCceEEEEECC--CEEEEEcCC-----CCEE
Confidence 3348899999999999999999984 45999999887765 4554 6889999999965 477777888 9999
Q ss_pred EEeCC-CCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 160 IWDDH-QSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 160 iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
+||+. .+..+..+. |...|.+++|+|++.++++ |+.|++||+++++.+..+..+...+..++|+|++..+++..+
T Consensus 200 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~ 279 (401)
T 4aez_A 200 HHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279 (401)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC
T ss_pred EEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec
Confidence 99998 456667776 9999999999999988884 899999999999999999889999999999999988766554
Q ss_pred cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEE--EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLAT--SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~--~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
|+.|+.|++||++++.......+...|.+++|+|++++|++ |+.||. |++||+.+++.........|...|.+++|+
T Consensus 280 gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s 358 (401)
T 4aez_A 280 GTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALS 358 (401)
T ss_dssp CTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEEC
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEEC
Confidence 55899999999998766655567889999999999999999 558999 999999998776665444477899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
|+|++|++++.||.|++||+.+++.+.
T Consensus 359 ~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 359 PDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp TTSSEEEEECTTSEEEEEECCC-----
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999999999999999999999987543
No 78
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.6e-33 Score=295.21 Aligned_cols=286 Identities=16% Similarity=0.203 Sum_probs=236.4
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC--CeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC--NILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~~~~ 155 (432)
....+|...|++++|+|+|++|++++. +.|+|||+.+++.. ..+. +|...+.++.|++ +...+++++.|
T Consensus 651 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d----- 722 (1249)
T 3sfz_A 651 LDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV--HTYD-EHSEQVNCCHFTNKSNHLLLATGSND----- 722 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSCCEEEEEETT-----
T ss_pred EEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE--EEEc-CCCCcEEEEEEecCCCceEEEEEeCC-----
Confidence 456789999999999999999999985 45999999988766 4554 6889999999998 66789999998
Q ss_pred CeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEe--------------------
Q 014007 156 NKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIE-------------------- 211 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~-------------------- 211 (432)
+.|++||+.+++++..+. |...|.+++|+|++.++++ ||.|++||+.+++....+.
T Consensus 723 ~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 802 (1249)
T 3sfz_A 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVK 802 (1249)
T ss_dssp SCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBC
T ss_pred CeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEE
Confidence 999999999999998888 9999999999999998884 8999999998776544332
Q ss_pred -----------------------------------eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeee
Q 014007 212 -----------------------------------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIM 255 (432)
Q Consensus 212 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~ 255 (432)
.+...+..++|+|++..++. ++.|+.|++||+.++ ....+.
T Consensus 803 ~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~---~~~dg~v~vwd~~~~~~~~~~~ 879 (1249)
T 3sfz_A 803 CCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI---ALSQYCVELWNIDSRLKVADCR 879 (1249)
T ss_dssp CCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE---ECSSSCEEEEETTTTEEEEEEC
T ss_pred EEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE---EeCCCeEEEEEcCCCceeeecC
Confidence 34556778888888875443 347999999999885 455678
Q ss_pred ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc-----------------------------eEEEEEeC------
Q 014007 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-----------------------------LLQEVRRG------ 300 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~-----------------------------~~~~~~~~------ 300 (432)
+|...|.+++|+|+|++|++++.|+. |++||+.+.. .+......
T Consensus 880 ~h~~~v~~v~~spdg~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1249)
T 3sfz_A 880 GHLSWVHGVMFSPDGSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY 958 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE
T ss_pred CCccceEEEEECCCCCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEE
Confidence 99999999999999999999999999 9999975310 00011100
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE 380 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (432)
.....+.+++|+|+++++++|+.+|.|++||+.+++. +..+.+|.
T Consensus 959 ~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~-----------------------------------~~~~~~h~ 1003 (1249)
T 3sfz_A 959 LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV-----------------------------------FSSGVGHK 1003 (1249)
T ss_dssp ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC-----------------------------------EEECCCCS
T ss_pred cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce-----------------------------------eeecccCC
Confidence 0235799999999999999999999999999988763 33456788
Q ss_pred CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 381 GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.|.+++|+|++++|++++.||.|++|++..
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTT
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 8999999999999999999999999999754
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-32 Score=260.02 Aligned_cols=287 Identities=8% Similarity=0.050 Sum_probs=226.8
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe---eEEEeecc-------------------------------------
Q 014007 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---EIFRRDFE------------------------------------- 125 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~---~~~~~~~~------------------------------------- 125 (432)
.++.+++|+++|++|+++.++.|++||+.+++ ........
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 47899999999998888888889999998776 22111100
Q ss_pred --------------cCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCC--CCceeEEee---cCCceEEEEEec
Q 014007 126 --------------RGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDH--QSRCIGELS---FRSEVRSVKLRR 185 (432)
Q Consensus 126 --------------~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~---~~~~v~~~~~~~ 185 (432)
..+...|.+++|++++..| ++++.| +.|++||+. +++.+..+. +...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD-----KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE 159 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGG-----TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC-----CeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence 0123369999999999885 888888 999999999 888887774 678999999999
Q ss_pred CccEEEe---CCeEEEEEcCCCeeeE----EEeeccCCcceEEEecC---CCcEEEEeecCCCCcEEEEEccCCc-eee-
Q 014007 186 DRIIVVL---EQKIFVYNFADLKLLH----QIETIANPKGLCAVSQG---VGSLVLVCPGLQKGQVRVEHYASKR-TKF- 253 (432)
Q Consensus 186 ~~~~~~~---d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~d~~i~i~d~~~~~-~~~- 253 (432)
++.++++ ++.|++|++.+++... .+..|...+.+++|+|+ ++. +++ ++.|+.|++||++++. +..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~--l~s-~~~d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF--IIT-SDRDEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE--EEE-EETTSCEEEEEESCTTCEEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE--EEE-EcCCCcEEEEECCCCceeeee
Confidence 9988884 7899999998876544 67788899999999999 543 333 3489999999998754 334
Q ss_pred eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-----------------------CCcCceEEEE
Q 014007 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-----------------------ADRAEIYSLA 310 (432)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-----------------------~~~~~i~~~~ 310 (432)
+.+|...|.+++|+ ++++|++++.|+. |++||+++++++..+..+ .....|.+++
T Consensus 237 ~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 237 LFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred ecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 55899999999999 9999999999999 999999999999888732 1235799999
Q ss_pred ECCCCCEEEEEe-CCCeEEEEEe--cCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEE
Q 014007 311 FSSNAQWLAVSS-DKGTVHVFNL--KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA 387 (432)
Q Consensus 311 ~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 387 (432)
|+|++++|++++ .|+.|+||++ .++.. ...+..+..| +.|.+++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~--------------------------------l~~~~~~~~~-~~v~~~~ 361 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGD--------------------------------LALKQIITFP-YNVISLS 361 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTC--------------------------------EEEEEEEECS-SCEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCc--------------------------------eeeccEeccC-CceEEEE
Confidence 999999999998 8999999999 33321 0114456677 7899999
Q ss_pred EccCCCEEEEEec------CCeEEEEEecCCCCC
Q 014007 388 FGHQKNTVVILGM------DGSFYRCQFDPVNGG 415 (432)
Q Consensus 388 ~s~~~~~l~~~~~------dg~v~iw~~~~~~~~ 415 (432)
|+|++.++++++. +..|.+|.++...++
T Consensus 362 ~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 362 AHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp EETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred ecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 9996544444443 556899999877553
No 80
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.8e-32 Score=256.81 Aligned_cols=279 Identities=16% Similarity=0.273 Sum_probs=227.4
Q ss_pred ccCCCCCCCe-EEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 79 STSSSPPPTL-LHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 79 ~~~~~~~~~v-~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
....+|.+.| .+ ++++|++|++|+ |+.|++||+.+++.. ..+. +|...|.++.|+++ .+++++.| +
T Consensus 112 ~~l~~h~~~v~~~--~~~~g~~l~sg~~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~~~~~~~--~l~s~~~d-----g 179 (445)
T 2ovr_B 112 KVLKGHDDHVITC--LQFCGNRIVSGSDDNTLKVWSAVTGKCL--RTLV-GHTGGVWSSQMRDN--IIISGSTD-----R 179 (445)
T ss_dssp EEEECSTTSCEEE--EEEETTEEEEEETTSCEEEEETTTCCEE--EECC-CCSSCEEEEEEETT--EEEEEETT-----S
T ss_pred EEecccCCCcEEE--EEEcCCEEEEEECCCcEEEEECCCCcEE--EEEc-CCCCCEEEEEecCC--EEEEEeCC-----C
Confidence 4567888875 55 455688999988 455999999888765 5565 78999999999854 77777888 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
.|++||+.+++.+..+. |...|.++.++++....+ .|+.|++||+.+++.+..+..|...+.++.+ +++.++.
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--- 254 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVS--- 254 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEE---
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEE---
Confidence 99999999999999988 999999999975543333 3899999999999999999999998888877 5554432
Q ss_pred cCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 235 GLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
|+.|+.|++||+++.. +..+.+|...|.++.| ++.+|++++.|+. |++||+++++++..+.. |...+.++.+
T Consensus 255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~--~~~~v~~~~~-- 327 (445)
T 2ovr_B 255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTG--HQSLTSGMEL-- 327 (445)
T ss_dssp EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECC--CCSCEEEEEE--
T ss_pred EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcC--CcccEEEEEE--
Confidence 3479999999998854 5567789999999999 8899999999999 99999999999988875 5678888887
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCceEEEEcc
Q 014007 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYIVAFGH 390 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~ 390 (432)
++++|++++.||.|++||+++++. +..+.. |.+.|.+++|+
T Consensus 328 ~~~~l~~~~~dg~i~vwd~~~~~~-----------------------------------~~~~~~~~~~~~~v~~~~~~- 371 (445)
T 2ovr_B 328 KDNILVSGNADSTVKIWDIKTGQC-----------------------------------LQTLQGPNKHQSAVTCLQFN- 371 (445)
T ss_dssp ETTEEEEEETTSCEEEEETTTCCE-----------------------------------EEEECSTTSCSSCEEEEEEC-
T ss_pred eCCEEEEEeCCCeEEEEECCCCcE-----------------------------------EEEEccCCCCCCCEEEEEEC-
Confidence 567999999999999999988763 223443 67789999995
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCcceEe
Q 014007 391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~ 420 (432)
+++|++|+.||.|++|++.. ++.+..+
T Consensus 372 -~~~l~s~~~dg~v~iwd~~~--~~~~~~~ 398 (445)
T 2ovr_B 372 -KNFVITSSDDGTVKLWDLKT--GEFIRNL 398 (445)
T ss_dssp -SSEEEEEETTSEEEEEETTT--CCEEEEE
T ss_pred -CCEEEEEeCCCeEEEEECCC--Cceeeee
Confidence 68999999999999998754 4444433
No 81
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=256.80 Aligned_cols=248 Identities=15% Similarity=0.167 Sum_probs=205.7
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~ 155 (432)
....+|.+.|++++|+|++++|++|+ |+.|+||++..........+. +|...|.++.|+++ +..+++++.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d----- 78 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD----- 78 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETT-----
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccC-----
Confidence 45678999999999999999999998 555999999865555556665 78999999999876 8999999999
Q ss_pred CeEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEec-
Q 014007 156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQ- 224 (432)
Q Consensus 156 ~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~- 224 (432)
+.|++||+.+++ .+..+. |...|.+++|+|+ +.++++ |+.|++||++++. ....+..+...+..++|+|
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 999999999886 566666 8999999999998 777773 8999999998873 3445667888999999999
Q ss_pred ------------CCCcEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCC---CCEEEEEcCCCceEE
Q 014007 225 ------------GVGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR 284 (432)
Q Consensus 225 ------------~~~~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~ 284 (432)
++..+ ++ ++.|+.|++||++... ...+.+|...|.+++|+|+ +++|++++.||. |+
T Consensus 159 ~~~~~~~~~~~~~~~~l--~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~ 234 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKF--VT-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI 234 (379)
T ss_dssp C----------CTTCEE--EE-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EE
T ss_pred cccccccccCCCCCCEE--EE-EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EE
Confidence 45543 33 3489999999998742 3456789999999999999 899999999999 99
Q ss_pred EEECCCCc---eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 285 IFNTLDGT---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 285 vwd~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+||+++++ ....+....|...|.+++|+|+|++|++++.||.|++|++....
T Consensus 235 iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 99999875 22233323366889999999999999999999999999998543
No 82
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.3e-33 Score=258.58 Aligned_cols=279 Identities=11% Similarity=0.097 Sum_probs=222.7
Q ss_pred CeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeE--EEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEE
Q 014007 87 TLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREI--FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~-~~~-~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iw 161 (432)
....++++|+...++ +++ ++.|+||++...... ....+. +|...|.+++|++ ++..+++++.| +.|++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~d-----g~v~vw 109 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSED-----CTVMVW 109 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETT-----SEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCC-----CeEEEE
Confidence 344689999876554 345 555999998654332 112343 7899999999999 89999999999 999999
Q ss_pred eCCCC-------ceeEEee-cCCceEEEEEecCc-cEEEe---CCeEEEEEcCCCeeeEEE--eeccCCcceEEEecCCC
Q 014007 162 DDHQS-------RCIGELS-FRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADLKLLHQI--ETIANPKGLCAVSQGVG 227 (432)
Q Consensus 162 d~~~~-------~~~~~~~-~~~~v~~~~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 227 (432)
|+.++ +.+..+. |...|.+++|+|++ .++++ |+.|++||+++++.+..+ ..|...+.+++|+|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp ECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSS
T ss_pred EccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCC
Confidence 99987 5677777 99999999999998 46663 899999999999999988 77889999999999988
Q ss_pred cEEEEeecCCCCcEEEEEccCCce-eee-eccCCc-eeEEEEcCCCCEEEEE---cCCCceEEEEECCCCce-EEEEEeC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRT-KFI-MAHDSR-IACFALTQDGQLLATS---STKGTLVRIFNTLDGTL-LQEVRRG 300 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~-~~~-~~~~~~-i~~~~~sp~~~~l~~~---~~dg~~i~vwd~~~~~~-~~~~~~~ 300 (432)
.++.+ +.|+.|++||++++.. ..+ ..|... +.++.|+|++++|++| +.|+. |++||+++++. +.....
T Consensus 190 ~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~- 264 (402)
T 2aq5_A 190 LICTS---CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQEL- 264 (402)
T ss_dssp CEEEE---ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEEC-
T ss_pred EEEEE---ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEec-
Confidence 65533 3899999999998554 445 577766 8999999999999999 78999 99999998765 333332
Q ss_pred CCcCceEEEEECCCCCEEEE-EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe-
Q 014007 301 ADRAEIYSLAFSSNAQWLAV-SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL- 378 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 378 (432)
.+...+.+++|+|++++|++ ++.||.|++||+.+++.. +..+..
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~----------------------------------~~~l~~~ 310 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF----------------------------------LHYLSMF 310 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----------------------------------EEEEEEE
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----------------------------------eEeeccc
Confidence 25678999999999999975 557999999999987621 112222
Q ss_pred -cCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 379 -VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 379 -~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
|.+.|.+++|+|++.++++ .++.+++|++...
T Consensus 311 ~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 311 SSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER 343 (402)
T ss_dssp CCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred ccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence 4588999999999998764 5779999999763
No 83
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.5e-32 Score=257.72 Aligned_cols=277 Identities=17% Similarity=0.204 Sum_probs=225.8
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~ 155 (432)
....+|.+.|++++|+|++ +|++|+ |+.|++||+.+++.. ..+. +|...|.++.+. +++..+++++.|
T Consensus 156 ~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~--~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d----- 226 (464)
T 3v7d_B 156 LQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--HVFE-GHNSTVRCLDIVEYKNIKYIVTGSRD----- 226 (464)
T ss_dssp EEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEEESSSCEEEEEEETT-----
T ss_pred EEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEE--EEEC-CCCCccEEEEEecCCCCCEEEEEcCC-----
Confidence 4566899999999999998 777777 566999999988765 4554 688899999887 678999999999
Q ss_pred CeEEEEeCCCCce-----------------------eEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeE
Q 014007 156 NKVMIWDDHQSRC-----------------------IGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLH 208 (432)
Q Consensus 156 ~~v~iwd~~~~~~-----------------------~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~ 208 (432)
+.|++||+.++.. +..+. |...+.++ ++++.++++ |+.|++||+++++.+.
T Consensus 227 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~ 304 (464)
T 3v7d_B 227 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY 304 (464)
T ss_dssp SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 9999999987653 23344 67777776 556666663 8999999999999999
Q ss_pred EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-ceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK-RTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
.+..|...+..++|+|+++.++. |+.|+.|++||++++ .+..+.+|...|.+++|+ +++|++++.||. |++||
T Consensus 305 ~~~~~~~~v~~~~~~~~~~~l~s---g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd 378 (464)
T 3v7d_B 305 ILSGHTDRIYSTIYDHERKRCIS---ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWD 378 (464)
T ss_dssp EECCCSSCEEEEEEETTTTEEEE---EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEE
T ss_pred EecCCCCCEEEEEEcCCCCEEEE---EeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEE
Confidence 99999999999999999885543 348999999999874 456778999999999997 579999999999 99999
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccccee
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYF 367 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (432)
+.+++....+. +...+..++|++++++|++++ ||.|++||+++++.+...
T Consensus 379 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~-------------------------- 428 (464)
T 3v7d_B 379 ANDYSRKFSYH---HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN-------------------------- 428 (464)
T ss_dssp TTTCCEEEEEE---CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC--------------------------
T ss_pred CCCCceeeeec---CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh--------------------------
Confidence 99988877765 556788899999999999998 899999999998743211
Q ss_pred ecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 368 SSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 368 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..|.+.|.+++|+ +...+++++.||.+++|-+|.
T Consensus 429 --------~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 429 --------ILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp --------TTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEEEC
T ss_pred --------hccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEeec
Confidence 12356779999997 445666777888888887753
No 84
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2e-32 Score=257.25 Aligned_cols=254 Identities=13% Similarity=0.109 Sum_probs=204.3
Q ss_pred CcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC----------CceeEEee-cCCceEEEEEecCcc-EEEe-
Q 014007 127 GGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----------SRCIGELS-FRSEVRSVKLRRDRI-IVVL- 192 (432)
Q Consensus 127 ~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~----------~~~~~~~~-~~~~v~~~~~~~~~~-~~~~- 192 (432)
.|...|.+++|+++ +.++++++.+ |.|++||+.+ .+.+..+. |...|.+++|+|++. ++++
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~d-----g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPS-----SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSS-----SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred cCCCcEEEEEECCCCCcEEEEECCC-----CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 58889999999997 7889999988 9999999986 56667777 899999999999987 6663
Q ss_pred --CCeEEEEEcCCCee-------eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC----ceeeeeccCC
Q 014007 193 --EQKIFVYNFADLKL-------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----RTKFIMAHDS 259 (432)
Q Consensus 193 --d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----~~~~~~~~~~ 259 (432)
||.|++||+.++.. ...+..|...+..++|+|++..++++ ++.|+.|++||++.. ....+..|..
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS--VADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE--EeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 89999999987322 45566788889999999976665443 347999999999974 4556779999
Q ss_pred ceeEEEEcCCCC-EEEEEcCCCceEEEEECCC-CceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007 260 RIACFALTQDGQ-LLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 260 ~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 336 (432)
.|++++|+|++. +|++|+.||. |++||+++ .+.+..+.. |...|.+++|+|+++ +|++++.||.|+|||+....
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~--h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFES--HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEEC--CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTT
T ss_pred CeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeec--CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCc
Confidence 999999999987 6889999999 99999998 567777875 668999999999985 68999999999999998744
Q ss_pred CCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecC
Q 014007 337 GSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~ 411 (432)
...... .........+..+.+|.+.|+.++|+|+++ +|++++.||.|+||+++.
T Consensus 356 ~~~~~~---------------------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 356 EEQSTE---------------------DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCCHH---------------------HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cccCcc---------------------ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 211000 000000112445667888999999999999 899999999999999865
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=254.02 Aligned_cols=244 Identities=12% Similarity=0.147 Sum_probs=204.0
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFV 198 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i 198 (432)
+|...|.+++|++++..+++++.| +.|++||+. +++.+..+. |...|.+++|+++ +.++++ |+.|++
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred CCcccEEEEEEcCCCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 799999999999999999999988 999999998 556677777 9999999999976 777773 899999
Q ss_pred EEcCCCe--eeEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcC---
Q 014007 199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ--- 268 (432)
Q Consensus 199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp--- 268 (432)
||+.+++ .+..+..|...+.+++|+|+ +..++. ++.|+.|++||++.. ....+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV---ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE---EETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE---ecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999987 67777778899999999999 664433 348999999999885 3445678999999999999
Q ss_pred ----------CCCEEEEEcCCCceEEEEECCCCce----EEEEEeCCCcCceEEEEECCC---CCEEEEEeCCCeEEEEE
Q 014007 269 ----------DGQLLATSSTKGTLVRIFNTLDGTL----LQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 269 ----------~~~~l~~~~~dg~~i~vwd~~~~~~----~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd 331 (432)
++.+|++++.|+. |++||+++++. ...+. .|...|.+++|+|+ +++|++++.||.|++||
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp ---------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999999999 99999987753 33444 36789999999999 89999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.++...... .+.....|.+.|++++|+|++++|++++.||.|++|+++.
T Consensus 238 ~~~~~~~~~~------------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 238 QDNEQGPWKK------------------------------TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ESSTTSCCEE------------------------------EESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCCcccee------------------------------eeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 9986521100 0001123667899999999999999999999999999974
No 86
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8e-32 Score=252.52 Aligned_cols=245 Identities=12% Similarity=0.163 Sum_probs=209.3
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...|...|++|+|+|+|++|++|+ |+.|+|||+.+++.. ..+. +|...+.++.+++ ..+++++.| +.++
T Consensus 143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~--~~~~-~h~~~v~~~s~~~--~~l~sgs~d-----~~i~ 212 (420)
T 4gga_A 143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNS--YILSSGSRS-----GHIH 212 (420)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--EEEC-CCSSCEEEEEEET--TEEEEEETT-----SEEE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--EEEe-CCCCceEEEeeCC--CEEEEEeCC-----Ccee
Confidence 456888999999999999999998 455999999988766 4554 6888898888865 477888888 9999
Q ss_pred EEeCCCC-ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCe----eeEEEeeccCCcceEEEecCCCcEE
Q 014007 160 IWDDHQS-RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLK----LLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 160 iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
+||.... ..+..+. |...+..+.+++++.++++ |+.+++|+..+++ .+.....+...+..++|+|.+..++
T Consensus 213 ~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~l 292 (420)
T 4gga_A 213 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292 (420)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEE
T ss_pred EeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEE
Confidence 9998865 4556666 8999999999999998884 8999999998764 3456667888999999999998887
Q ss_pred EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
...+|+.|+.|++||+.++.......+...+.++.|+|+++.|++++ .|+. |+|||+.+++++.++.+ |...|++
T Consensus 293 a~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~ 369 (420)
T 4gga_A 293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLS 369 (420)
T ss_dssp EEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred EEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence 76667899999999999977766666677899999999999888765 7899 99999999999999985 6789999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
++|+|||++|++|+.|++|+|||+......
T Consensus 370 l~~spdg~~l~S~s~D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 370 LTMSPDGATVASAAADETLRLWRCFELDPA 399 (420)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence 999999999999999999999999876543
No 87
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.9e-31 Score=250.98 Aligned_cols=279 Identities=10% Similarity=0.039 Sum_probs=228.3
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
...+.+++|+|++.+++++++++ |++||+.+++..... .+. +|...+.++.|++++..+++++.+ +.|++
T Consensus 122 ~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~s~~~d-----~~v~~ 195 (433)
T 3bws_A 122 GFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYK-KKLGFVETISIPEHNELWVSQMQA-----NAVHV 195 (433)
T ss_dssp SSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHH-TTCCEEEEEEEGGGTEEEEEEGGG-----TEEEE
T ss_pred CCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCccccc-ccCCceeEEEEcCCCEEEEEECCC-----CEEEE
Confidence 34567899999777777777554 999999887765322 222 677899999999999999999988 99999
Q ss_pred EeCCCCceeEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 161 WDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 161 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
||+.+++.+..+. +...+.+++|+|++..++ + ++.|++||+++++.+..+..+ ..+..++++|+++.++++..+
T Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~ 274 (433)
T 3bws_A 196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFS 274 (433)
T ss_dssp EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEE
T ss_pred EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECC
Confidence 9999999988887 888999999999998764 2 789999999999888777653 447789999999877665432
Q ss_pred C-----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEE-EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 236 L-----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 236 ~-----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
. .|+.|++||++++.......|...+.+++|+|+++.+ ++++.++. |++||+.+++.+..+. +...+.++
T Consensus 275 ~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~---~~~~~~~~ 350 (433)
T 3bws_A 275 ASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIP---VFDKPNTI 350 (433)
T ss_dssp SCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSSEEEE
T ss_pred CCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEec---CCCCCCeE
Confidence 2 4789999999987776666777789999999999755 66688999 9999999999988887 45789999
Q ss_pred EECCCCCEEEEEeC---------------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeE
Q 014007 310 AFSSNAQWLAVSSD---------------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 310 ~~s~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
+|+|+|++|++++. ||.|++||+.+++. +.
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~-----------------------------------~~ 395 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV-----------------------------------KE 395 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE-----------------------------------EE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE-----------------------------------EE
Confidence 99999999988876 57999999988762 22
Q ss_pred EEEecCCCceEEEEccCCCEEEEEec-CCeEEEEEec
Q 014007 375 QFRLVEGSPYIVAFGHQKNTVVILGM-DGSFYRCQFD 410 (432)
Q Consensus 375 ~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~ 410 (432)
.+.. ...+..++|+|+|++|++++. ||.|++|+++
T Consensus 396 ~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 396 FWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 2333 446899999999999998875 9999999985
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=259.44 Aligned_cols=258 Identities=10% Similarity=0.033 Sum_probs=206.8
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
..-...|.+++|+|||+++|++++++ |+ +.... ..+. +|...+..++|+|++ .+ +.+.+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l~-gh~~~v~~V~FsPdg-------~~-----~~~~~ 71 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDIN-CNSKNLFHVKEFPLE-------FE-----NKLDF 71 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCCS-SBGGGTEEEEEECCC-------CC-----CTTTT
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceee--ccccc-----ceec-CCCccEEEEEECCCC-------Cc-----ceEEE
Confidence 33457899999999999999999555 88 64433 3344 799999999999998 34 66777
Q ss_pred EeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-----CcceEEEecCCCcEEEE
Q 014007 161 WDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 161 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 232 (432)
|+.+ +..+..+.+...|.+++|+|+|..+++ ||.|++||... ++..+. |.. .+.+++|+|+|+.++.+
T Consensus 72 ~~~~-~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg 147 (588)
T 2j04_A 72 ELAQ-QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG 147 (588)
T ss_dssp SCCC-SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEE
T ss_pred EeCC-CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEE
Confidence 7643 333444457888999999999998884 99999999543 555565 554 48899999999976543
Q ss_pred eecCCCCcEEEEEccCCc--------eeee----eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce---EEEE
Q 014007 233 CPGLQKGQVRVEHYASKR--------TKFI----MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL---LQEV 297 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~--------~~~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~---~~~~ 297 (432)
+.||.|++||+..+. +..+ .+|...|.+++|+|+| |++++.|+. |++||+.+++. ..++
T Consensus 148 ---s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 148 ---NEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp ---ETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEE
T ss_pred ---cCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeee
Confidence 489999999999864 3555 5677899999999999 788888999 99999988774 3566
Q ss_pred EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE
Q 014007 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR 377 (432)
Q Consensus 298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (432)
..+ |...|.+++|+ |+.||+++ +++|++||+.+++ ...+.
T Consensus 222 ~~~-h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~------------------------------------~~~~~ 261 (588)
T 2j04_A 222 QNA-SRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYS------------------------------------ISSLK 261 (588)
T ss_dssp ECC-CSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTE------------------------------------EEEEE
T ss_pred ccc-ccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCe------------------------------------EEEEE
Confidence 533 66899999999 68999997 6999999999876 32334
Q ss_pred -ecCCCceEEEE--ccCCCEEEEEecCCeEEEEEec
Q 014007 378 -LVEGSPYIVAF--GHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 378 -~~~~~v~~~~~--s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+|.+.|+.++| +||+..|+++++||. ++|.++
T Consensus 262 ~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 262 TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 79999999999 999999999999999 999986
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8.7e-33 Score=253.72 Aligned_cols=245 Identities=13% Similarity=0.114 Sum_probs=193.2
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc------------CCcEEEEEcCCCeeEE--Eeecc----cCcceeEEEEeeeCCe
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT------------DHGFRIYNCDPFREIF--RRDFE----RGGGIGVVEMLFRCNI 141 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~------------~~~i~iw~~~~~~~~~--~~~~~----~~~~~~v~~~~~~~~~ 141 (432)
.+..|.+.|.+++++ +..+++|. ++.+++|+++...... ..... ..+...+..++|+||+
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 356788889888765 45666653 3449999986543221 11111 1234567889999998
Q ss_pred EEE--ecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEE--eeccC
Q 014007 142 LAL--VGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQI--ETIAN 215 (432)
Q Consensus 142 ~~~--~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~--~~~~~ 215 (432)
..+ ++++.| ++|+|||+.+++++..+.|...|.+++|+|||.++++ ++.+.+|+..+++.+... ..+..
T Consensus 146 ~~la~as~~~d-----~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (365)
T 4h5i_A 146 TVAAIASSKVP-----AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNW 220 (365)
T ss_dssp SCEEEEESCSS-----CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTE
T ss_pred CEEEEEECCCC-----CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCC
Confidence 765 567778 9999999999999999999999999999999999884 788889988887765433 44667
Q ss_pred CcceEEEecCCCcEEEEeecCCCC----cEEEEEccCCc-----eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKG----QVRVEHYASKR-----TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIF 286 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~----~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vw 286 (432)
.+..++|+|++..++.++ .++ .+++|++.... ...+.+|...|++++|+|+|++||+|+.|+. |+||
T Consensus 221 ~v~~v~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~-V~iw 296 (365)
T 4h5i_A 221 SLSKINFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS-IALV 296 (365)
T ss_dssp EEEEEEEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC-EEEE
T ss_pred CEEEEEEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE-EEEE
Confidence 788999999998665443 233 57788877633 3456789999999999999999999999999 9999
Q ss_pred ECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|+++++++..+..+ |...|++++|+|||++|++|+.|++|+|||+....
T Consensus 297 d~~~~~~~~~~~~g-H~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 297 KLKDLSMSKIFKQA-HSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp ETTTTEEEEEETTS-SSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred ECCCCcEEEEecCc-ccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 99999999887533 78999999999999999999999999999996543
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-33 Score=259.51 Aligned_cols=239 Identities=12% Similarity=0.095 Sum_probs=194.0
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--ceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--RCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNF 201 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~ 201 (432)
+...|.+++|++++..+++++.| +.|++||+.++ +.+..+. |...|.+++|+|++.++++ |+.|++||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTAT-----NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSS-----SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCC-----CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 55689999999999999999998 99999999988 6777777 9999999999999988874 899999999
Q ss_pred CCCe---eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eeeeec-cCCceeEEEEcCCCCEE
Q 014007 202 ADLK---LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKFIMA-HDSRIACFALTQDGQLL 273 (432)
Q Consensus 202 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~~~~-~~~~i~~~~~sp~~~~l 273 (432)
.+++ ....+..|...+..++|+|+++.++.+ +.|+.|++||++... ...+.. |...|.+++|+|++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVG---SGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEE---ESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEE---ecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 9877 566677788999999999998866533 379999999999864 566776 99999999999999999
Q ss_pred EEEcCCCceEEEEECCC------------------CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 274 ATSSTKGTLVRIFNTLD------------------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 274 ~~~~~dg~~i~vwd~~~------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
++++.|+. |++||++. ++++..+ .|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 162 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 162 AAGCADRK-AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EEEESSSC-EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred EEEeCCCE-EEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 99999999 99999853 4455555 37789999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+... ..+..+..|.+.|.+++|+|++++|++++.|+.+ +|+.+
T Consensus 238 ~~~~-------------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 238 EQPP-------------------------------RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp TSCE-------------------------------EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCcc-------------------------------eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 7411 0022467888999999999999999998866665 77665
No 91
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-31 Score=241.65 Aligned_cols=241 Identities=10% Similarity=0.150 Sum_probs=208.6
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.+++|++++..+++++.| +.|++||+.+++.+..+. |...|.+++|+|++.++++ |+.|+
T Consensus 26 ~~l~-~h~~~v~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 26 IKLT-GHERPLTQVKYNKEGDLLFSCSKD-----SSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp EEEE-CCSSCEEEEEECTTSCEEEEEESS-----SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred EEEE-EeeceEEEEEEcCCCCEEEEEeCC-----CEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 4555 799999999999999999999998 999999999999999998 9999999999999988884 89999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-----CcEEEEEccCC------------ceeeeeccCC-
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK-----GQVRVEHYASK------------RTKFIMAHDS- 259 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d-----~~i~i~d~~~~------------~~~~~~~~~~- 259 (432)
+||+.+++.+..+. +...+..++|+|+++.++.+. .+ +.|.+||+... ....+..|..
T Consensus 100 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 100 LWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAIL---DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp EEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEE---CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred EEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEec---CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99999999988887 778899999999998665433 45 99999999863 2344556666
Q ss_pred -ceeEEEEcCCCCEEEEEcCCCceEEEEECCC-CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 260 -RIACFALTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 260 -~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.+.+++|+|++++|++++.||. |++||+++ ++.+..+.. |...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGK-ISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSE-EEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred cceeEEEEcCCCCEEEEEcCCCE-EEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 8999999999999999999999 99999998 677877775 568999999999999999999999999999988762
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC--------------e
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG--------------S 403 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~ 403 (432)
+..+. +...+..++|+|+++++++++.++ .
T Consensus 253 -----------------------------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 296 (369)
T 3zwl_B 253 -----------------------------------LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFE 296 (369)
T ss_dssp -----------------------------------EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CE
T ss_pred -----------------------------------eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcce
Confidence 12222 667899999999999999999998 7
Q ss_pred EEEEEecC
Q 014007 404 FYRCQFDP 411 (432)
Q Consensus 404 v~iw~~~~ 411 (432)
+++|++..
T Consensus 297 i~~~d~~~ 304 (369)
T 3zwl_B 297 ARFYHKIF 304 (369)
T ss_dssp EEEEETTT
T ss_pred eEEEecCC
Confidence 88887643
No 92
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1e-31 Score=247.42 Aligned_cols=238 Identities=15% Similarity=0.115 Sum_probs=205.8
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc--eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYN 200 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d 200 (432)
.|...|.+++|++++..+++++.+ +.|++||+.+++ .+..+. |...|.+++|+|++.++++ |+.|++||
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d-----~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNN-----HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSS-----SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 477889999999999999999888 999999999887 778887 9999999999999998884 89999999
Q ss_pred cCCCeeeEEE--eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc----eee-eeccCCceeEEEEcCCCCEE
Q 014007 201 FADLKLLHQI--ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR----TKF-IMAHDSRIACFALTQDGQLL 273 (432)
Q Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~----~~~-~~~~~~~i~~~~~sp~~~~l 273 (432)
+.+++....+ ..+...+..++|+|+++.++.+ +.|+.|++||++... ... ...|...|.+++|+|++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVG---SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEE---ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEE---eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 9888755444 4577889999999998755433 379999999998854 233 35789999999999999999
Q ss_pred EEEcCCCceEEEEEC------------------CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 274 ATSSTKGTLVRIFNT------------------LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 274 ~~~~~dg~~i~vwd~------------------~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
++++.|+. |++||+ ..++++..+.. |...|.+++|+|++++|++++.||.|++||++++
T Consensus 158 ~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 158 AAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp EEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred EEEcCCCC-EEEEEcccccccccccccccccccchhhheEecCC--CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999 999995 36778777764 6689999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 336 SGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+. +..+..|...|.+++|+|++++|++| .||.|++|+++.
T Consensus 235 ~~-----------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 235 MA-----------------------------------VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TE-----------------------------------EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ce-----------------------------------eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 62 44677888899999999999988877 899999999976
No 93
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-31 Score=271.53 Aligned_cols=243 Identities=12% Similarity=0.163 Sum_probs=205.5
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.....|...|++++|+|++++|++|++++ |++|++.+++.. ..+. +|...|.+++|++++..+++++.| +.
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-----g~ 120 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV--VDFE-AHPDYIRSIAVHPTKPYVLSGSDD-----LT 120 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE--EEEE-CCSSCEEEEEECSSSSEEEEEETT-----SE
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEe-cCCCCEEEEEEeCCCCEEEEEcCC-----CE
Confidence 45567999999999999999999998555 999999888766 4454 688999999999999999999998 99
Q ss_pred EEEEeCCCC-ceeEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeecc-CCcceEEEec--CCCc
Q 014007 158 VMIWDDHQS-RCIGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQ--GVGS 228 (432)
Q Consensus 158 v~iwd~~~~-~~~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~ 228 (432)
|++||+.++ .....+. |...|.+++|+| ++..+++ |+.|++||+.+++....+..+. ..+..++|+| ++..
T Consensus 121 i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 200 (814)
T 3mkq_A 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY 200 (814)
T ss_dssp EEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE
T ss_pred EEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE
Confidence 999999887 5666666 899999999999 7777763 8999999999888777776554 7889999999 6553
Q ss_pred EEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 229 LVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+++ ++.||.|++||+.++. ...+.+|...|.+++|+|++++|++++.||. |++||+.+++.+..+.. +...+.
T Consensus 201 --l~~-~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--~~~~v~ 274 (814)
T 3mkq_A 201 --MIT-ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNV--GLERSW 274 (814)
T ss_dssp --EEE-ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECC--SSSSEE
T ss_pred --EEE-EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeec--CCCcEE
Confidence 343 4489999999998754 5567789999999999999999999999999 99999999999988875 557999
Q ss_pred EEEECCCCC--EEEEEeCCCeEEEEEecCCC
Q 014007 308 SLAFSSNAQ--WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 308 ~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~ 336 (432)
+++|+|+++ +++++ .++.+.+|++....
T Consensus 275 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 275 CIATHPTGRKNYIASG-FDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEECTTCGGGEEEEE-ETTEEEEEECSCCS
T ss_pred EEEEccCCCceEEEEE-eCCCEEEEEcCCCC
Confidence 999999987 45555 57779999987654
No 94
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.2e-31 Score=248.23 Aligned_cols=264 Identities=12% Similarity=0.122 Sum_probs=207.7
Q ss_pred eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEec-CccEEEe---C
Q 014007 122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRR-DRIIVVL---E 193 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~-~~~~~~~---d 193 (432)
..+. +|...|.+++|++++ ..+++++.| +.|++||+.+++....+. |...|.+++|+| ++.++++ |
T Consensus 67 ~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 67 RTAS-PFDRRVTSLEWHPTHPTTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp EEEC-CCSSCEEEEEECSSCTTEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred Eecc-CCCCCEEEEEECCCCCCEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 3444 788999999999998 899999998 999999999888777765 899999999999 6677763 8
Q ss_pred CeEEEEEcCCCeeeEEEeecc---CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC
Q 014007 194 QKIFVYNFADLKLLHQIETIA---NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~ 270 (432)
+.|++||++. ..+..+..+. ..+.+++|+|+++.++. ++.|+.|++||++...+..+..|...|.+++|+|++
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLAT---GDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEE---EETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSC
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEE---ECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCC
Confidence 9999999985 5555554443 67889999999885443 348999999999888888899999999999999999
Q ss_pred C-EEEEEcCCCceEEEEECCC----CceEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCC
Q 014007 271 Q-LLATSSTKGTLVRIFNTLD----GTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPR 344 (432)
Q Consensus 271 ~-~l~~~~~dg~~i~vwd~~~----~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 344 (432)
+ +|++++.|+. |++||+++ ++++..+. |...|.+++|+| ++++|++++.|+.|++||+++++.......+
T Consensus 217 ~~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 217 DWLMATSSVDAT-VKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp TTEEEEEETTSE-EEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCEEEEEeCCCE-EEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 9 9999999999 99999998 66777774 778999999999 9999999999999999999998755433221
Q ss_pred CCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 345 STSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
......... .+...-.+.+.+..++|+|++++ +++.||.|++|++.. ++.+..++
T Consensus 293 ~~~~~~~~~------------------~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~--~~~~~~l~ 347 (383)
T 3ei3_B 293 PHRQFQHLT------------------PIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANS--GGLVHQLR 347 (383)
T ss_dssp CBCCCTTSC------------------CCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTT--CCEEEEEC
T ss_pred ccccccccc------------------ceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCC--Cceeeeec
Confidence 111000000 00001112345667888999888 889999999998743 45555544
No 95
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3e-32 Score=250.32 Aligned_cols=238 Identities=13% Similarity=0.172 Sum_probs=199.5
Q ss_pred CCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCC
Q 014007 83 SPPPTLLHISFNQD----HGCFAAGTDHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLN 156 (432)
Q Consensus 83 ~~~~~v~~~~~s~~----~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~ 156 (432)
.|...|++++|+|+ +++|++|+.++ |++||+.+++.. ..+. +|...|.++.|++ ++..+++++.| +
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~--~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d-----g 138 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--KHYV-GHGNAINELKFHPRDPNLLLSVSKD-----H 138 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE--EEEE-SCCSCEEEEEECSSCTTEEEEEETT-----S
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe--eeec-CCCCcEEEEEECCCCCCEEEEEeCC-----C
Confidence 37789999999999 66899888555 999999887765 4454 6899999999999 89999999998 9
Q ss_pred eEEEEeCCCCceeEEe---e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEee-----------------
Q 014007 157 KVMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET----------------- 212 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~----------------- 212 (432)
.|++||+.+++.+..+ . |...|.+++|+|++.++++ |+.|++||+++++....+..
T Consensus 139 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (366)
T 3k26_A 139 ALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK 218 (366)
T ss_dssp CEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred eEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence 9999999999998887 4 8999999999999988874 89999999998765443332
Q ss_pred -----------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc---------------eeeeeccCCceeEEEE
Q 014007 213 -----------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR---------------TKFIMAHDSRIACFAL 266 (432)
Q Consensus 213 -----------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~---------------~~~~~~~~~~i~~~~~ 266 (432)
|...+.+++|+ ++ ++++ ++.|+.|++||++... +..+..|...|.+++|
T Consensus 219 ~~~~~~~~~~~~~~~v~~~~~~--~~--~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (366)
T 3k26_A 219 IHFPDFSTRDIHRNYVDCVRWL--GD--LILS-KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRF 293 (366)
T ss_dssp ECCCSEEECSSCSSCCCEEEEE--TT--EEEE-ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCC
T ss_pred eccCccccccCCcceEEEEEEc--CC--EEEE-EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEE
Confidence 77888899998 44 3343 4479999999988732 4556789999999999
Q ss_pred cCC--CCEEEEEcCCCceEEEEECCCCc----eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 267 TQD--GQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 267 sp~--~~~l~~~~~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+|+ +++|++++.||. |++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.+
T Consensus 294 s~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 294 SMDFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EECTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cCCCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999 999999999999 9999999876 344666544478999999999999999999999999999863
No 96
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.4e-32 Score=250.07 Aligned_cols=247 Identities=13% Similarity=0.169 Sum_probs=204.6
Q ss_pred ccCCCCCCCeEEEEEcCC----C---CEEEEEc-CCcEEEEEcCCCee---EEEeecccCc-----ceeEEEEeee----
Q 014007 79 STSSSPPPTLLHISFNQD----H---GCFAAGT-DHGFRIYNCDPFRE---IFRRDFERGG-----GIGVVEMLFR---- 138 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~----~---~~l~~~~-~~~i~iw~~~~~~~---~~~~~~~~~~-----~~~v~~~~~~---- 138 (432)
.....|...|++++|+|+ + ++|++++ ++.|++|++.+.+. .....+. .| ...|.++.|+
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~ 134 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASND 134 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC-
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccC
Confidence 445579999999999999 9 8999888 55599999976653 0013343 45 5899999999
Q ss_pred CCeEE-EecCCCCCCCCCCeEEEEeCCC------CceeE-----Ee-------e-cCCceEEEEEecCccEEEe---CCe
Q 014007 139 CNILA-LVGGGPDPQYPLNKVMIWDDHQ------SRCIG-----EL-------S-FRSEVRSVKLRRDRIIVVL---EQK 195 (432)
Q Consensus 139 ~~~~~-~~s~~~d~~~~~~~v~iwd~~~------~~~~~-----~~-------~-~~~~v~~~~~~~~~~~~~~---d~~ 195 (432)
+++.. +++++.| +.|++||+.+ ++.+. .+ . |...|.+++|+|++ ++++ |+.
T Consensus 135 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~ 208 (397)
T 1sq9_A 135 RLLSHRLVATDVK-----GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT 208 (397)
T ss_dssp ---CEEEEEEETT-----SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred CCCceEEEEEeCC-----CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence 99998 9999988 9999999988 66655 55 3 68899999999999 7663 899
Q ss_pred EEEEEcCCCeeeEEEee---c---cCCcceEEEecCCCcEEEEeecCCC---CcEEEEEccCC-ceeeeec---------
Q 014007 196 IFVYNFADLKLLHQIET---I---ANPKGLCAVSQGVGSLVLVCPGLQK---GQVRVEHYASK-RTKFIMA--------- 256 (432)
Q Consensus 196 i~i~d~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~g~~d---~~i~i~d~~~~-~~~~~~~--------- 256 (432)
|++||+++++.+..+.. | ...+..++|+|+++.++.+ +.| +.|++||+++. .+..+..
T Consensus 209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~---~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 285 (397)
T 1sq9_A 209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA---HDSNSFGCITLYETEFGERIGSLSVPTHSSQASL 285 (397)
T ss_dssp EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE---EEETTEEEEEEEETTTCCEEEEECBC--------
T ss_pred EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE---ecCCCCceEEEEECCCCcccceeccCcccccccc
Confidence 99999999999999988 8 8899999999998755432 367 99999999874 4556667
Q ss_pred ----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEE------eC-------------CCcCceEEEEECC
Q 014007 257 ----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVR------RG-------------ADRAEIYSLAFSS 313 (432)
Q Consensus 257 ----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~------~~-------------~~~~~i~~~~~s~ 313 (432)
|...|.+++|+|++++|++++.|+. |++||+++++++..+. .+ .|...|.+++|+|
T Consensus 286 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~ 364 (397)
T 1sq9_A 286 GEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLK 364 (397)
T ss_dssp CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEEC
T ss_pred cccccCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecc
Confidence 9999999999999999999999999 9999999999999998 42 0168999999999
Q ss_pred CC----------CEEEEEeCCCeEEEEEecCCC
Q 014007 314 NA----------QWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 314 ~~----------~~l~~~~~dg~i~iwd~~~~~ 336 (432)
++ ++|++++.||.|++||+.+++
T Consensus 365 ~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 365 KGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 98 799999999999999998763
No 97
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=257.74 Aligned_cols=295 Identities=11% Similarity=0.095 Sum_probs=214.7
Q ss_pred EEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC---Cc
Q 014007 92 SFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ---SR 167 (432)
Q Consensus 92 ~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~---~~ 167 (432)
.|+|+++.++++. .|+.. ++.. ..+..+|...|.+++|++ ++..+++++.| +.|++||+.+ +.
T Consensus 34 ~f~~~~~~~~~~~-----~w~~~-g~~~--~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~ 100 (437)
T 3gre_A 34 EFGPIQEIVRSPN-----MGNLR-GKLI--ATLMENEPNSITSSAVSPGETPYLITGSDQ-----GVIKIWNLKEIIVGE 100 (437)
T ss_dssp GGCCCCCCCCCCC-----GGGCC-CCEE--EEECTTTTSCEEEEEEECSSSCEEEEEETT-----SEEEEEEHHHHHTTC
T ss_pred hcCCccccccccc-----ccccc-ceEE--eeeccCCCCceEEEEECCCCCCEEEEecCC-----ceEEEeECcccccCc
Confidence 4788888777665 37633 3333 455337899999999999 99999999999 9999999876 33
Q ss_pred ---eeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcC---CCeeeEEEeec------------cCCcceEEE--ec
Q 014007 168 ---CIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFA---DLKLLHQIETI------------ANPKGLCAV--SQ 224 (432)
Q Consensus 168 ---~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~---~~~~~~~~~~~------------~~~~~~~~~--~~ 224 (432)
....+.|...|.+++|+|++.++++ |+.|++||+. +++.+..+..+ ...+.++.+ ++
T Consensus 101 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 101 VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence 3455568999999999999988874 8999999995 45444433322 223333442 24
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCCc-eeeeec--cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~ 301 (432)
++. ++++ ++.|+.|++||+++.. +..+.. |...|++++|+|++++|++|+.||. |++||+++++++..+...
T Consensus 181 ~~~--~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~- 255 (437)
T 3gre_A 181 EKS--LLVA-LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFG- 255 (437)
T ss_dssp SCE--EEEE-EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBCT-
T ss_pred CCC--EEEE-EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEecC-
Confidence 444 4443 4489999999998854 456666 8999999999999999999999999 999999999999888633
Q ss_pred CcCceEEEEEC----CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCC---CCCCCCceeEeecccceeecceeeE
Q 014007 302 DRAEIYSLAFS----SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDP---TLPTSSLSFIKGVLPKYFSSEWSVA 374 (432)
Q Consensus 302 ~~~~i~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (432)
|...|.+++|+ +++.+|++++.||.|++||+++++.+..+..+..... ..+.... +. -.
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~--------~~ 321 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKG------LE--------EL 321 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSS------GG--------GC
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccc------cc--------cc
Confidence 55789999555 5688999999999999999998875544433322111 0000000 00 00
Q ss_pred EEEe--cCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 375 QFRL--VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 375 ~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
.+.+ |.+.|++++|+ ++++|++|+.||.|++|++.. ++....+.
T Consensus 322 ~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~ 367 (437)
T 3gre_A 322 NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE--LSSSKAVI 367 (437)
T ss_dssp CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC--GGGCEEEE
T ss_pred eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC--cccceEEe
Confidence 1233 77889999999 889999999999999999854 44444443
No 98
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-30 Score=236.63 Aligned_cols=255 Identities=9% Similarity=0.114 Sum_probs=206.6
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCc-----eeEEee-cCCceEE
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSR-----CIGELS-FRSEVRS 180 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~-----~~~~~~-~~~~v~~ 180 (432)
+.++...+.+..+..+|+ +|...|.+++|+|+ +.+|++++.| ++|++||+.+++ +...+. |...|.+
T Consensus 18 ~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D-----~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~ 91 (340)
T 4aow_A 18 LYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRD-----KTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91 (340)
T ss_dssp --------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETT-----SCEEEEEECCSSSCSEEEEEEECCCSSCEEE
T ss_pred EEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCC-----CeEEEEECCCCCcccceeeEEEeCCCCCEEE
Confidence 555565566666667787 89999999999997 5799999999 999999987653 455566 8999999
Q ss_pred EEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce--eeee
Q 014007 181 VKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFIM 255 (432)
Q Consensus 181 ~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~~ 255 (432)
++|+|++.++++ |+.|++|+............+...+....++++++.++. ++.|+.+++||...... ....
T Consensus 92 ~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s---~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE---EETTSCEEEECTTSCEEEEECSS
T ss_pred EEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee---ecCCCeEEEEEeCCCceEEEEec
Confidence 999999998884 899999999998888888878888888888998876543 34899999999987543 3356
Q ss_pred ccCCceeEEEEcCCC--CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 256 AHDSRIACFALTQDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~--~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+|...+.+++|++++ .++++++.|+. |++||+++++++..+.. |...|++++|+|++++|++|+.||.|++||++
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~-i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKL-VKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCE-EEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 789999999999864 57889999999 99999999999988875 66899999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 334 VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.+. +..+. +...|.+++|+|++.++ +++.||.|++|+++.
T Consensus 246 ~~~~-----------------------------------~~~~~-~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 246 EGKH-----------------------------------LYTLD-GGDIINALCFSPNRYWL-CAATGPSIKIWDLEG 286 (340)
T ss_dssp TTEE-----------------------------------EEEEE-CSSCEEEEEECSSSSEE-EEEETTEEEEEETTT
T ss_pred cCce-----------------------------------eeeec-CCceEEeeecCCCCcee-eccCCCEEEEEECCC
Confidence 8762 22233 34579999999987654 567799999999753
No 99
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.8e-31 Score=240.94 Aligned_cols=244 Identities=12% Similarity=0.144 Sum_probs=200.1
Q ss_pred CcceeEEEEeeeCCe-EEEecCCC---CCCCCCCeEEEEeCCCCceeEEe--ecCCceEEEEEecC---ccEEEe---CC
Q 014007 127 GGGIGVVEMLFRCNI-LALVGGGP---DPQYPLNKVMIWDDHQSRCIGEL--SFRSEVRSVKLRRD---RIIVVL---EQ 194 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~-~~~~s~~~---d~~~~~~~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~---~~~~~~---d~ 194 (432)
+|...|.+++|+|++ .++++++. | +.|++||+.+++..... .|...|.+++|+|+ +.++++ |+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 90 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGT-----GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG 90 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCC-----EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCC-----cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence 689999999999987 56666665 7 99999999998765443 48999999999998 576663 89
Q ss_pred eEEEEEcCCCe-eeEEEeeccCCcceEEE------ecCCCcEEEEeecCCCCcEEEEEccCCc--eeeeeccCC----ce
Q 014007 195 KIFVYNFADLK-LLHQIETIANPKGLCAV------SQGVGSLVLVCPGLQKGQVRVEHYASKR--TKFIMAHDS----RI 261 (432)
Q Consensus 195 ~i~i~d~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~d~~i~i~d~~~~~--~~~~~~~~~----~i 261 (432)
.|++||+.+++ .+..+..|...+..+.+ +++++.+ ++ ++.|+.|++||++... ...+..|.. .+
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l--~~-~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI--VT-GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE--EE-EETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE--EE-EeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 99999999887 88888899999998855 5666644 33 3489999999999853 556655544 78
Q ss_pred eEEE----EcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC---CCCEEEEEeCCCeEEEEEecC
Q 014007 262 ACFA----LTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS---NAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 262 ~~~~----~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~~~~dg~i~iwd~~~ 334 (432)
.+++ |+|++++|++++.|+. |++||+++++...... |...|.+++|+| ++.+|++++.||.|++||+++
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 243 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGD-IKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRT 243 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSE-EEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEccCCe-EEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence 9998 7899999999999999 9999999998866554 668999999999 999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEecCCeEEEEEecCC
Q 014007 335 NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~iw~~~~~ 412 (432)
++..... ....+..|.+.|.+++|+|+++ +|++++.||.|++|+++..
T Consensus 244 ~~~~~~~------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 244 QHPTKGF------------------------------ASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EETTTEE------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred CCcccce------------------------------eeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 7643211 1224568999999999999998 8999999999999999753
No 100
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6.5e-31 Score=262.01 Aligned_cols=241 Identities=12% Similarity=0.139 Sum_probs=203.8
Q ss_pred eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCC-----ceeEEee-cCCceEEEEEecCccEEEe--
Q 014007 122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQS-----RCIGELS-FRSEVRSVKLRRDRIIVVL-- 192 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~-----~~~~~~~-~~~~v~~~~~~~~~~~~~~-- 192 (432)
..+. +|...|.++++++++ ..+++++.| ++|++||+.+. .....+. |...|.+++|+|++.++++
T Consensus 376 ~~l~-~H~~~V~~v~~~~~~~~~l~s~s~D-----~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 376 GTMR-AHTDMVTAIATPIDNADIIVSASRD-----KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp EEEE-CCSSCEEEEECCTTCCSEEEEEETT-----SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred hhcc-cCCceeEEEEecCCCCCEEEEEeCC-----CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 3454 799999999999764 789999999 99999998764 3345566 9999999999999998884
Q ss_pred -CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee----eccCCceeEEEEc
Q 014007 193 -EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----MAHDSRIACFALT 267 (432)
Q Consensus 193 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~~~~~~i~~~~~s 267 (432)
|++|++||+.+++.+..+..|...|.+++|+|+++.++. ++.|+.|++||........+ .+|...|.+++|+
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 526 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS---ASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFS 526 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE---EETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEEC
T ss_pred CCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEE---EeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEe
Confidence 899999999999999999999999999999999986542 34899999999877544433 4688999999999
Q ss_pred CCC--CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCC
Q 014007 268 QDG--QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRS 345 (432)
Q Consensus 268 p~~--~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 345 (432)
|++ .+|++++.|+. |++||++++++...+.. |...|++++|+|++++|++++.||.|++||+.+++.+.
T Consensus 527 ~~~~~~~l~s~s~d~~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~------ 597 (694)
T 3dm0_A 527 PNTLQPTIVSASWDKT-VKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY------ 597 (694)
T ss_dssp SCSSSCEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE------
T ss_pred CCCCcceEEEEeCCCe-EEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE------
Confidence 987 58999999999 99999999999888875 66899999999999999999999999999999876321
Q ss_pred CCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+ .+...|.+++|+|++.+|++++ |+.|+||++..
T Consensus 598 -----------------------------~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~ 632 (694)
T 3dm0_A 598 -----------------------------SL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES 632 (694)
T ss_dssp -----------------------------CC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred -----------------------------Ee-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence 11 1335689999999998887765 56699999854
No 101
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.5e-29 Score=234.79 Aligned_cols=262 Identities=15% Similarity=0.115 Sum_probs=211.6
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
.++++++ ++.|++||+.+++.. ..+. +...+.+++|++++..+ ++++.+ +.|++||+.+++.+..+.+.
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~--~~~~--~~~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~ 73 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT--ATIP--VGSNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAG 73 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECS
T ss_pred EEEEEcCCCCEEEEEECCCCeEE--EEee--cCCCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECC
Confidence 3566676 555999999888765 4444 33458999999999765 677677 99999999999999999877
Q ss_pred CceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 176 SEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
..+.+++|+|++.+++ + ++.|++||+.+++.+..+..+ ..+..++|+|+++.++++ +..++.|++||+.++..
T Consensus 74 ~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~--~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 74 SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT--NNGDKTVSVINTVTKAV 150 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE--ETTTTEEEEEETTTTEE
T ss_pred CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE--eCCCCEEEEEECCCCcE
Confidence 7999999999998775 2 689999999999988887654 456789999999876554 35789999999988665
Q ss_pred eeeeccCCceeEEEEcCCCCEE-EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe---CCCeE
Q 014007 252 KFIMAHDSRIACFALTQDGQLL-ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS---DKGTV 327 (432)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l-~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~---~dg~i 327 (432)
.....+...+.+++|+|++++| ++++.++. |++||+++++.+..+. +...+.+++|+|+|++|++++ .++.|
T Consensus 151 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~~~v 226 (391)
T 1l0q_A 151 INTVSVGRSPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVK---VEAAPSGIAVNPEGTKAYVTNVDKYFNTV 226 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEE---CSSEEEEEEECTTSSEEEEEEECSSCCEE
T ss_pred EEEEecCCCcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEe---cCCCccceEECCCCCEEEEEecCcCCCcE
Confidence 5444445667999999999887 57788898 9999999999888887 446899999999999999888 68999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE-EEEecCCeEEE
Q 014007 328 HVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV-VILGMDGSFYR 406 (432)
Q Consensus 328 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~v~i 406 (432)
++||+.+++. +..+..|. .+..++|+|++++| ++++.|+.|++
T Consensus 227 ~~~d~~~~~~-----------------------------------~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v 270 (391)
T 1l0q_A 227 SMIDTGTNKI-----------------------------------TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSV 270 (391)
T ss_dssp EEEETTTTEE-----------------------------------EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEECCCCeE-----------------------------------EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEE
Confidence 9999988752 22344444 47899999999987 56688999999
Q ss_pred EEecC
Q 014007 407 CQFDP 411 (432)
Q Consensus 407 w~~~~ 411 (432)
|++..
T Consensus 271 ~d~~~ 275 (391)
T 1l0q_A 271 IDTAT 275 (391)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98753
No 102
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.6e-30 Score=230.57 Aligned_cols=243 Identities=12% Similarity=0.162 Sum_probs=205.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
...|...|++++|+|++++|++|+. +.|+||++.+++.. ..+. +|...+..+.+.+ ..+++++.+ +.++
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~--~~~~-~h~~~~~~~~~~~--~~l~s~~~~-----~~~~ 132 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL--RNMT-SHSARVGSLSWNS--YILSSGSRS-----GHIH 132 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE--EEEE-CCSSCEEEEEEET--TEEEEEETT-----SEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE--EEec-CccceEEEeecCC--CEEEEEecC-----CceE
Confidence 4578889999999999999999985 55999999988766 4454 6777787776665 467777777 9999
Q ss_pred EEeCCCCc-eeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee----eEEEeeccCCcceEEEecCCCcEE
Q 014007 160 IWDDHQSR-CIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL----LHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 160 iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
+|+...+. .+..+. |...+..+.+.+++.++++ |+.|++||+++++. ......+...+..+.+.+++..++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 212 (318)
T 4ggc_A 133 HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 212 (318)
T ss_dssp EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEE
T ss_pred eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEE
Confidence 99988764 445555 8999999999999998884 89999999987653 344455677888999999988887
Q ss_pred EEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 231 LVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
...+++.++.|++||...........+...+..+.|+|++..+++++ .|+. |++||+++++++.++.+ |...|++
T Consensus 213 ~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~ 289 (318)
T 4ggc_A 213 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLS 289 (318)
T ss_dssp EEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred EEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence 77678899999999999988877788899999999999999887654 7899 99999999999999985 6789999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 309 LAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 309 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
++|+|+|++|++|+.||+|+|||+.+..
T Consensus 290 l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 290 LTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 9999999999999999999999997653
No 103
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.6e-31 Score=249.39 Aligned_cols=236 Identities=11% Similarity=0.184 Sum_probs=190.5
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-----------eeEEee-cC------------CceEEEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELS-FR------------SEVRSVKL 183 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----------~~~~~~-~~------------~~v~~~~~ 183 (432)
+...|.+++|++++.+|++++.| |.|++||+.+++ ....+. |. ..|.+++|
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~ 101 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKG-----GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 101 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETT-----SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCC-----CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE
Confidence 67899999999999999999999 999999998876 466666 77 88999999
Q ss_pred ecCc--cEEE---eCCeEEEEEcCCCeee---------------------------------------EE-EeeccCCcc
Q 014007 184 RRDR--IIVV---LEQKIFVYNFADLKLL---------------------------------------HQ-IETIANPKG 218 (432)
Q Consensus 184 ~~~~--~~~~---~d~~i~i~d~~~~~~~---------------------------------------~~-~~~~~~~~~ 218 (432)
+|++ ..++ .|+.|++||+.+++.. .. ...|...+.
T Consensus 102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 9997 4555 3999999998764432 12 246888999
Q ss_pred eEEEecCCCcEEEEeecCCCCcEEEEEccC-Cce-e-------eeeccCCceeEEEEcCCC-CEEEEEcCCCceEEEEEC
Q 014007 219 LCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT-K-------FIMAHDSRIACFALTQDG-QLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~-~-------~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~ 288 (432)
.++|+|+++.+ ++ | .|+.|++||++. ... . .+.+|...|.+++|+|++ ++|++|+.|+. |++||+
T Consensus 182 ~~~~~~~~~~l--~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd~ 256 (447)
T 3dw8_B 182 SISINSDYETY--LS-A-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCDM 256 (447)
T ss_dssp EEEECTTSSEE--EE-E-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEET
T ss_pred EEEEcCCCCEE--EE-e-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEEC
Confidence 99999998744 43 4 699999999984 322 2 255899999999999998 99999999999 999999
Q ss_pred CCCce----EEEEEeCCCcC------------ceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCC
Q 014007 289 LDGTL----LQEVRRGADRA------------EIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTL 351 (432)
Q Consensus 289 ~~~~~----~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 351 (432)
++++. +..+.. |.. .|.+++|+|+|++|++++. +.|++||+++ ++.+.
T Consensus 257 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~------------ 321 (447)
T 3dw8_B 257 RASALCDRHSKLFEE--PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE------------ 321 (447)
T ss_dssp TTCSSSCTTCEEECC--C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC------------
T ss_pred cCCccccceeeEecc--CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc------------
Confidence 99887 677764 333 8999999999999999998 9999999987 55332
Q ss_pred CCCCceeEeecccceeecceeeEEEEecCCC---------------ceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS---------------PYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.+..|... +..++|+|++++|++|+.||.|++|++..
T Consensus 322 -----------------------~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 322 -----------------------TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp -----------------------CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred -----------------------eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence 23334321 23499999999999999999999999854
No 104
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-32 Score=257.05 Aligned_cols=229 Identities=14% Similarity=0.096 Sum_probs=178.7
Q ss_pred eCCeEEEecCCCCCCCCCCeEEEEeCCCCcee----EEee-cCCceEEEEEecC------ccEEEe---CCeEEEEEcCC
Q 014007 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCI----GELS-FRSEVRSVKLRRD------RIIVVL---EQKIFVYNFAD 203 (432)
Q Consensus 138 ~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~------~~~~~~---d~~i~i~d~~~ 203 (432)
++++..+++++.| ++|+|||+.+++.. ..+. |.+.|.+++|+|+ +.++++ |++|++||+.+
T Consensus 170 ~~~~~~laS~s~D-----~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~ 244 (524)
T 2j04_B 170 NEHLEMFDKEKHS-----SCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIID 244 (524)
T ss_dssp ------------C-----EEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCC
T ss_pred chhhhhhccCCCC-----ceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCC
Confidence 3455566777788 99999999877642 3345 6788999999996 456663 99999999986
Q ss_pred Cee-----------eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeEE--EEcC
Q 014007 204 LKL-----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIACF--ALTQ 268 (432)
Q Consensus 204 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~--~~sp 268 (432)
++. ...+..|...+.+++|++++ .+++ |+.||.|++||++++ ....+.+|...|.+| +|+|
T Consensus 245 ~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~las-gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 245 NATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVC-GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEE-EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEE-EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 532 23567788899999999753 3443 558999999999864 334578999999999 6788
Q ss_pred CC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCC
Q 014007 269 DG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTS 347 (432)
Q Consensus 269 ~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 347 (432)
+| ++|++|+.|++ |+|||+++++++..+.++.....|.+++|+|+++.|++++.|++|++||++++..
T Consensus 321 ~g~~~laS~S~D~t-vklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~---------- 389 (524)
T 2j04_B 321 FEDTVVSTVAVDGY-FYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA---------- 389 (524)
T ss_dssp TSCCEEEEEETTSE-EEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC----------
T ss_pred CCCeEEEEeccCCe-EEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc----------
Confidence 88 89999999999 9999999988877777543223588999999999999999999999999988763
Q ss_pred CCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 348 DPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|.+.|++|+|+|+|++|++|+.||+|++|++..
T Consensus 390 -------------------------~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 390 -------------------------VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp -------------------------CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred -------------------------ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 235778999999999999999999999999999998643
No 105
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.8e-30 Score=224.40 Aligned_cols=274 Identities=10% Similarity=0.114 Sum_probs=187.4
Q ss_pred CeEEEEEcCCCC---EEEEEcCCcEEEEEcCCC---eeEEEeecccCcceeEEEEeeeCC---eEEEecCCCCCCCCCCe
Q 014007 87 TLLHISFNQDHG---CFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNK 157 (432)
Q Consensus 87 ~v~~~~~s~~~~---~l~~~~~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~ 157 (432)
.+.++.|-.-|- .++++++..|++|+.... ++. ..+. .|...|..+.+.|+ ..+++-|.-. -+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~ 113 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKL--YTWH-FAEVPVLQIVPVPDVYNLVCVALGNLE----IRE 113 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEE--EEEE-CCSSCEEEECCCTTCCSCEEEEECSSS----EEE
T ss_pred EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceee--EEEe-ccCceeEEEEEcCcccceeeeeecccc----ccc
Confidence 466777765544 788888999999999776 444 4454 57888888888883 1222222211 011
Q ss_pred EEEEeCCC-----CceeEEeecCCceEEEEEecCccEEEe-----CCeEEEEEc-CCCeeeEEEeeccCCcceEEEec-C
Q 014007 158 VMIWDDHQ-----SRCIGELSFRSEVRSVKLRRDRIIVVL-----EQKIFVYNF-ADLKLLHQIETIANPKGLCAVSQ-G 225 (432)
Q Consensus 158 v~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~-----d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~-~ 225 (432)
|+..-+.. ++.+..-.+...|.++ ++++++.+ |+.|++|++ .+++.+..+..|...+..++|++ +
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp EEEECC------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE
T ss_pred eEEEEECCCccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccC
Confidence 11111111 1111111123333333 57777764 889999999 45888888889999999999999 5
Q ss_pred CCcEEEEeecCCCCcEEEEEccCCc-eeeeeccC---CceeEEEEcCCCCEE------------EEEcCCCceEEEEECC
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHD---SRIACFALTQDGQLL------------ATSSTKGTLVRIFNTL 289 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~---~~i~~~~~sp~~~~l------------~~~~~dg~~i~vwd~~ 289 (432)
|+..++++ |+.|++|+|||+++++ ++++.+|. ..+.+++|+|+|.++ ++|+.|++ |++||..
T Consensus 191 g~~~~LaS-gS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~ 268 (356)
T 2w18_A 191 GMQEALLG-TTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPK 268 (356)
T ss_dssp TSTTEEEE-EETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETT
T ss_pred CCCceEEE-ecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECC
Confidence 55556665 4589999999999864 56676554 367788999999886 56788999 9999999
Q ss_pred CCceEEEEEe---CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007 290 DGTLLQEVRR---GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY 366 (432)
Q Consensus 290 ~~~~~~~~~~---~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (432)
+++++..+.. ..|...+.+..+ ++.++++++.|++|+|||+.+++.
T Consensus 269 tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~----------------------------- 317 (356)
T 2w18_A 269 TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC----------------------------- 317 (356)
T ss_dssp TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE-----------------------------
T ss_pred CCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE-----------------------------
Confidence 9998876631 124444544444 378999999999999999999873
Q ss_pred eecceeeEEEEecCCCce-EEEEccCCCEEEEEecCCeEEEEEe
Q 014007 367 FSSEWSVAQFRLVEGSPY-IVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 367 ~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
+.++++|.+.+. .++|+|||++|++|+.|++|+||++
T Consensus 318 ------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 318 ------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 456777876554 6899999999999999999999986
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.6e-30 Score=236.64 Aligned_cols=242 Identities=10% Similarity=0.052 Sum_probs=196.3
Q ss_pred cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc----eeEEeecCCceEEEEEecCcc-EEEe---CCeEE
Q 014007 126 RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR----CIGELSFRSEVRSVKLRRDRI-IVVL---EQKIF 197 (432)
Q Consensus 126 ~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~---d~~i~ 197 (432)
.+|...|.+++|++++..+++++.| +.|++||+.+++ ......|...|.+++|+|++. ++++ |+.|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d-----~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWD-----GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETT-----SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCC-----CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3688999999999999999999988 999999998877 444445999999999999998 7773 89999
Q ss_pred EEEc-CCCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---------CceeeeeccCCceeEEE
Q 014007 198 VYNF-ADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHDSRIACFA 265 (432)
Q Consensus 198 i~d~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~ 265 (432)
+||+ .+++. ..+.. |...+..++|++ ++.++ + ++.|+.|++||++. ........|...|.+++
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~--s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 157 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLI--A-ASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEE--E-EETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCC-CCEEE--E-EcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEE
Confidence 9999 77654 66777 889999999999 65433 2 34899999999986 54333334899999999
Q ss_pred EcCCCCEEEEEcCCCceEEEEECCC-CceEEEEEeCCCcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCC--CCCCCC
Q 014007 266 LTQDGQLLATSSTKGTLVRIFNTLD-GTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVN--SGSARS 341 (432)
Q Consensus 266 ~sp~~~~l~~~~~dg~~i~vwd~~~-~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 341 (432)
|+|++ |++++.|+. |++||+++ +..........+...+.+++|+| ++++|++++.||.|++|+++.. .....
T Consensus 158 ~~~~~--l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~- 233 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQ-VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS- 233 (342)
T ss_dssp ECSSE--EEEEESTTE-EEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT-
T ss_pred ecCCc--EEEEeCCCe-EEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccc-
Confidence 99987 899999999 99999998 65432223234678999999999 9999999999999999999876 10000
Q ss_pred CCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC---------CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 342 EPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE---------GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
....++.|. ..|.+++|+|++++|++++.||.|++|++..
T Consensus 234 ------------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 234 ------------------------------KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp ------------------------------TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred ------------------------------cceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 023455554 3899999999999999999999999999743
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.98 E-value=1.1e-30 Score=243.38 Aligned_cols=249 Identities=11% Similarity=0.125 Sum_probs=204.0
Q ss_pred ccCCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEEcCCCee-----EEEeecccCcceeEEEEeeeCCe-EEEecCCCC
Q 014007 79 STSSSPPPTLLHISFNQ-DHGCFAAGTDHG-FRIYNCDPFRE-----IFRRDFERGGGIGVVEMLFRCNI-LALVGGGPD 150 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~-i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d 150 (432)
....+|.+.|++++|+| ++++|++|+.++ |+||++.+... .....+. +|...|.++.|++++ ..+++++.|
T Consensus 75 ~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 75 PLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETT
T ss_pred ceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCC
Confidence 45678999999999999 899999998555 99999987632 1124454 688999999999998 689999988
Q ss_pred CCCCCCeEEEEeCCCCceeEEe--e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE-eeccCC-cceEEE
Q 014007 151 PQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI-ETIANP-KGLCAV 222 (432)
Q Consensus 151 ~~~~~~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~-~~~~~~ 222 (432)
+.|++||+.+++.+..+ . |...|.+++|+|++.++++ |+.|++||+++++.+..+ ..|... +..+.|
T Consensus 154 -----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 228 (402)
T 2aq5_A 154 -----NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVF 228 (402)
T ss_dssp -----SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEE
T ss_pred -----CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEE
Confidence 99999999999999998 5 8999999999999988873 899999999999998888 566665 788999
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccCCce--eee-eccCCceeEEEEcCCCCEEE-EEcCCCceEEEEECCCCce-EEEE
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRT--KFI-MAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTL-LQEV 297 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~~~-~~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~~~~-~~~~ 297 (432)
++++..++.+..++.|+.|++||++.... ... ..|...+.+++|+|++++|+ +|+.|+. |++||+.+++. +..+
T Consensus 229 ~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~l 307 (402)
T 2aq5_A 229 VSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHYL 307 (402)
T ss_dssp CSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEee
Confidence 99876443321115899999999988432 222 35778899999999999986 5567999 99999999884 6666
Q ss_pred EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
..+.+...|.+++|+|++.++++ .++.+++|++.+++
T Consensus 308 ~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 308 SMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred cccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 65446689999999999998765 56799999998865
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.8e-31 Score=265.31 Aligned_cols=244 Identities=12% Similarity=0.150 Sum_probs=204.4
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEEee-cCCceEEEEEecC--ccEEEe---CCeEEE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFV 198 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i 198 (432)
+|...|.+++|++++..+++++.| |.|++||+. +++.+..+. |.+.|.+++|+++ +.++++ ||.|++
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 799999999999999999999999 999999987 456677777 9999999999987 877773 899999
Q ss_pred EEcCCCe--eeEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcC---
Q 014007 199 YNFADLK--LLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQ--- 268 (432)
Q Consensus 199 ~d~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp--- 268 (432)
||+.+++ .+..+..|...+.+++|+|+ ++.+ ++ |+.||.|++||++.. ....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l--~s-gs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~ 158 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL--LV-ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 158 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE--EE-EETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEE--EE-EeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccc
Confidence 9999986 67777788999999999999 6544 33 348999999999885 3455678999999999999
Q ss_pred ----------CCCEEEEEcCCCceEEEEECCCCc----eEEEEEeCCCcCceEEEEECCC---CCEEEEEeCCCeEEEEE
Q 014007 269 ----------DGQLLATSSTKGTLVRIFNTLDGT----LLQEVRRGADRAEIYSLAFSSN---AQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 269 ----------~~~~l~~~~~dg~~i~vwd~~~~~----~~~~~~~~~~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd 331 (432)
++.+|++|+.||. |++||++++. +...+. .|...|++++|+|+ +++|++++.||.|++||
T Consensus 159 ~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 159 EEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp --------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999999999 9999998873 444444 36789999999999 89999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+.+++...... +.....|.+.|++++|+|+|++|++|+.||.|++|+++.
T Consensus 236 ~~~~~~~~~~~------------------------------~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQGPWKKT------------------------------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSSSCCBCC------------------------------BSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCCCcceeE------------------------------EeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 99875211000 011234677899999999999999999999999999874
No 109
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-29 Score=228.03 Aligned_cols=236 Identities=11% Similarity=0.130 Sum_probs=200.3
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~ 197 (432)
..+. +|...|.+++| +++..+++++.| |.|++||+.+++....+. |...|.+++|+|++.++++ |+.|+
T Consensus 12 ~~l~-~h~~~v~~~~~-~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 84 (313)
T 3odt_A 12 ATLK-GHDQDVRDVVA-VDDSKVASVSRD-----GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN 84 (313)
T ss_dssp EEEC-CCSSCEEEEEE-EETTEEEEEETT-----SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred HHhh-CCCCCcEEEEe-cCCCEEEEEEcC-----CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence 5565 79999999999 888889999998 999999999988888887 8999999999999998884 89999
Q ss_pred EEEcCCC---eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcC-CCCEE
Q 014007 198 VYNFADL---KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQ-DGQLL 273 (432)
Q Consensus 198 i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp-~~~~l 273 (432)
+|++... +.+..+..|...+..+.+ +++.+ ++ ++.|+.|++|| .......+..|...+.++.|+| ++++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l--~~-~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV--IS-GSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE--EE-EETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEe--cCCEE--EE-EeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 9998764 557777888888888888 44433 33 34899999999 5556677888999999999998 99999
Q ss_pred EEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC
Q 014007 274 ATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPT 353 (432)
Q Consensus 274 ~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 353 (432)
++++.|+. |++|| ..+....+... +...+.+++|+|++. |++++.||.|++||+++++.
T Consensus 159 ~~~~~d~~-i~i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~---------------- 217 (313)
T 3odt_A 159 LTASADKT-IKLWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDV---------------- 217 (313)
T ss_dssp EEEETTSC-EEEEE--TTEEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCE----------------
T ss_pred EEEECCCC-EEEEe--cCceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhh----------------
Confidence 99999999 99999 55666666642 668999999999998 88999999999999988762
Q ss_pred CCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 354 SSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+..|.+.|.+++|+|++ .|++++.||.|++|++..
T Consensus 218 -------------------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 218 -------------------LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp -------------------EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT
T ss_pred -------------------hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC
Confidence 44677899999999999999 689999999999998744
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-30 Score=236.41 Aligned_cols=261 Identities=9% Similarity=0.067 Sum_probs=198.3
Q ss_pred EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC------
Q 014007 92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH------ 164 (432)
Q Consensus 92 ~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~------ 164 (432)
.+.+++.+|++|+ |+.|++||+.+++.... +. ...+..+.++++ +++++.| ++|++|+..
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~--~~---~~~v~~~~~~~~---~~s~s~D-----~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITT--IT---TPNPRTGGEHPA---IISRGPC-----NRLLLLYPGNQITIL 109 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEE--EE---EECCCTTCCCCS---EEEECST-----TEEEEEETTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEE--Ee---cCCceeeeeCCc---eEEecCC-----CeEEEEEccCceEEe
Confidence 4456788899998 55599999988776532 31 345667778887 8888888 999999655
Q ss_pred ---CCceeEEee--cCCceEEEEEec--CccEEEe---CCeEEEEEcCCCeeeEEEee-ccCCcceEEEecCCCcEEEEe
Q 014007 165 ---QSRCIGELS--FRSEVRSVKLRR--DRIIVVL---EQKIFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 165 ---~~~~~~~~~--~~~~v~~~~~~~--~~~~~~~---d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (432)
+++.+..+. |...|.+++|+| ++.++++ |+.|++||+++++.+..... +...+.+++|+|++..+ ++
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l--as 187 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL--AL 187 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE--EE
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE--EE
Confidence 455455555 668899999999 9988883 89999999999988666533 44578899999998743 43
Q ss_pred ecCCCCcEEEEEccCCce--eeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCce--E
Q 014007 234 PGLQKGQVRVEHYASKRT--KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEI--Y 307 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~--~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i--~ 307 (432)
|+.||.|++||++++.. ..+.. |...|.+++|+|+|.+|++++. +. |++||+++++.+..+... .+...+ .
T Consensus 188 -g~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 188 -YSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp -ECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred -EcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCcceeecccccccccccce
Confidence 45899999999998654 46777 9999999999999999999994 48 999999998776544320 011222 4
Q ss_pred EEEECCCCCEEEEEeC-CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007 308 SLAFSSNAQWLAVSSD-KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (432)
+++|+|+|++|++++. |+.|+||++.+.... |.. ..+..+
T Consensus 265 ~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~--------------------------------~~~-------~~~~~~ 305 (343)
T 3lrv_A 265 TYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN--------------------------------WTK-------DEESAL 305 (343)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCS--------------------------------EEE-------EEEEEC
T ss_pred EEEECCCCCEEEEecCCCCcEEEEEEcccccc--------------------------------eEe-------cCceeE
Confidence 6999999999999998 999999999766421 111 246678
Q ss_pred EEcc---CCCEEEEEecCCeEEEEEe
Q 014007 387 AFGH---QKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 387 ~~s~---~~~~l~~~~~dg~v~iw~~ 409 (432)
+|++ +.+.|++++.||.+.++-.
T Consensus 306 ~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 306 CLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp CC----CCCCEEEEEEETTEEEEEEE
T ss_pred ecCccccccceeEEEecCCceEEEEe
Confidence 8888 8889999999999998754
No 111
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=6e-31 Score=263.86 Aligned_cols=248 Identities=15% Similarity=0.160 Sum_probs=202.2
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC--eEEEecCCCCCCCCC
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN--ILALVGGGPDPQYPL 155 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~~~~ 155 (432)
.+..+|.+.|++++|+|+|++|++|+.+ .|+||++..........+. +|...|.++.|+++ +..+++++.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~D----- 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYD----- 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETT-----
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCC-----
Confidence 4568899999999999999999999854 4999999866555556665 78999999999987 8999999999
Q ss_pred CeEEEEeCCCCc--eeEEee-cCCceEEEEEecC--ccEEEe---CCeEEEEEcCCCe--eeEEEeeccCCcceEEEecC
Q 014007 156 NKVMIWDDHQSR--CIGELS-FRSEVRSVKLRRD--RIIVVL---EQKIFVYNFADLK--LLHQIETIANPKGLCAVSQG 225 (432)
Q Consensus 156 ~~v~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~--~~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~ 225 (432)
|.|++||+.+++ .+..+. |...|.+++|+|+ +.++++ ||.|++||++++. ....+..|...+.+++|+|.
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 999999999886 555666 8999999999998 877773 8999999998863 34556778889999999994
Q ss_pred -------------CCcEEEEeecCCCCcEEEEEccCCc-----eeeeeccCCceeEEEEcCC---CCEEEEEcCCCceEE
Q 014007 226 -------------VGSLVLVCPGLQKGQVRVEHYASKR-----TKFIMAHDSRIACFALTQD---GQLLATSSTKGTLVR 284 (432)
Q Consensus 226 -------------~~~~~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~ 284 (432)
+..++ + |+.||.|++||++... ...+.+|...|.+++|+|+ +++|++++.||. |+
T Consensus 157 ~~~~~~~~~~~~d~~~l~--s-gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~ 232 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFV--T-GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CI 232 (753)
T ss_dssp C---------CGGGCCEE--E-EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EE
T ss_pred ccccccccccCCCCCEEE--E-EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EE
Confidence 55443 2 3479999999998742 3456789999999999999 999999999999 99
Q ss_pred EEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 285 IFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 285 vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+||+++++.. .......|...|++++|+|+|++|++++.||.|++||+....
T Consensus 233 iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 9999886421 111222366889999999999999999999999999998654
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.5e-30 Score=243.04 Aligned_cols=247 Identities=12% Similarity=0.161 Sum_probs=202.4
Q ss_pred ccCCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEEcCCC--------eeEEEeecccCcceeEEEEeeeCCeE-EEecC
Q 014007 79 STSSSPPPTLLHISFNQD-HGCFAAGTDHG-FRIYNCDPF--------REIFRRDFERGGGIGVVEMLFRCNIL-ALVGG 147 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~-i~iw~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~ 147 (432)
.....|.+.|++++|+|+ +.+|++++.++ |++|++... .......+. +|...+.+++|++++. .++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEE
Confidence 445678999999999997 67889988555 999999751 122224444 6888999999999988 89999
Q ss_pred CCCCCCCCCeEEEEeCCCCce-------eEEee-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCC---eeeEEEee
Q 014007 148 GPDPQYPLNKVMIWDDHQSRC-------IGELS-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADL---KLLHQIET 212 (432)
Q Consensus 148 ~~d~~~~~~~v~iwd~~~~~~-------~~~~~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~---~~~~~~~~ 212 (432)
+.| |.|++||+.++.. ...+. |...|.+++|+| ++.++++ |+.|++||++++ +.+..+..
T Consensus 201 ~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 201 SDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp CTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 988 9999999987422 34454 889999999999 5666653 899999999987 57777888
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCC-EEEEEcCCCceEEEEECC
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQ-LLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~~i~vwd~~ 289 (432)
|...+.+++|+|+++.++++ |+.||.|++||++. ..+..+..|...|.+++|+|+++ +|++++.|+. |++||+.
T Consensus 276 ~~~~v~~i~~~p~~~~~l~t--g~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~ 352 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILAT--GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLS 352 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGG
T ss_pred CCCCeEEEEeCCCCCCEEEE--EeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCC
Confidence 99999999999999876543 35899999999987 45677888999999999999985 6999999999 9999998
Q ss_pred C--------------CceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCC
Q 014007 290 D--------------GTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 290 ~--------------~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 336 (432)
. .+++..+. .|...|.+++|+|+++ +|++++.||.|+||++....
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 7 24555444 3668899999999999 89999999999999997653
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=4e-30 Score=238.61 Aligned_cols=265 Identities=12% Similarity=0.011 Sum_probs=172.0
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEE---eecccCcceeEEEEeeeC--------CeEEEecCC
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFR---RDFERGGGIGVVEMLFRC--------NILALVGGG 148 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~---~~~~~~~~~~v~~~~~~~--------~~~~~~s~~ 148 (432)
...|...+....+++++.+|++++ |++|+|||+...+.... ..+. +|...|.+++|+| ++..|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~-gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKS-GHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTT-SCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccC-CCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 344555566666777888899998 66699999988765432 2344 8999999999987 789999999
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEe
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (432)
.| ++|+|||+.++..+..+. |...|.+++|+|++. ++++ |++|++||+++++.......+........++
T Consensus 164 ~D-----~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 164 DD-----CTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp TT-----SEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred CC-----CeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99 999999998877666555 999999999999874 5553 8999999999887665544333222222222
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEc-CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALT-QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s-p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~ 302 (432)
++.... .......+|...+.++.|+ |+|+.|++++.|+. +++||+..++....+.. +
T Consensus 239 ~~~~~~-------------------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~--~ 296 (393)
T 4gq1_A 239 LNTLPL-------------------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGA-WLRWNLFANNDYNEISD--S 296 (393)
T ss_dssp EESGGG-------------------C------CCSSSCSEEEEETTTTCEEEEECTTSE-EEEEEC--------------
T ss_pred cccccc-------------------eeeeecccccccceeeeeecCCCCEEEEEeCCCC-EEEEECccCCCCceEee--e
Confidence 211111 1112234688899999987 79999999999999 99999988876666553 2
Q ss_pred cCceEEEE------------------ECC--CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007 303 RAEIYSLA------------------FSS--NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (432)
Q Consensus 303 ~~~i~~~~------------------~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (432)
...+..+. |+| ++.++++|+.||+|++||+.+++.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~------------------------- 351 (393)
T 4gq1_A 297 TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS------------------------- 351 (393)
T ss_dssp -------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC-------------------------
T ss_pred cCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE-------------------------
Confidence 22333332 333 344677888999999999998763
Q ss_pred ccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
...+..|...|.+++|+|||++||+++.+| +.+|++
T Consensus 352 ----------~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 352 ----------NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp ----------CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred ----------EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 224567888999999999999999998776 555554
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.2e-28 Score=223.89 Aligned_cols=238 Identities=12% Similarity=0.094 Sum_probs=197.1
Q ss_pred CCeEEEEEcCCCCEE-EEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEE-ecCCCCCCCCCCeEEEEe
Q 014007 86 PTLLHISFNQDHGCF-AAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILAL-VGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l-~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~s~~~d~~~~~~~v~iwd 162 (432)
..+.+++|+|+|++| ++++ ++.|++||+.+++.. ..+. +...+.+++|++++..+ +++..+ +.|++||
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~--~~~~--~~~~v~~~~~spdg~~l~~~~~~~-----~~v~v~d 102 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI--ATVP--AGSSPQGVAVSPDGKQVYVTNMAS-----STLSVID 102 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--EEEE--CSSSEEEEEECTTSSEEEEEETTT-----TEEEEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--EEEE--CCCCccceEECCCCCEEEEEECCC-----CEEEEEE
Confidence 458999999999976 5554 666999999888766 4443 23388999999998765 566666 9999999
Q ss_pred CCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007 163 DHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 163 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
+.+++.+..+.+...+.+++|+|++..++ + ++.|++||+.+++.+..+..+. .+..++|+|+++.++++ +..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~--~~~~ 179 (391)
T 1l0q_A 103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA--NFDS 179 (391)
T ss_dssp TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE--ETTT
T ss_pred CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE--eCCC
Confidence 99999988888777899999999998664 3 7899999999999888887654 45789999999876554 3478
Q ss_pred CcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC
Q 014007 239 GQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA 315 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 315 (432)
+.|++||+++........+...+.+++|+|+|++|++++ .++. |++||+.+++.+..+..+ ..+.+++|+|+|
T Consensus 180 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg 255 (391)
T 1l0q_A 180 MSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDG 255 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEecC---CCccEEEEccCC
Confidence 999999999877666666778899999999999999888 6888 999999999998888853 468999999999
Q ss_pred CEE-EEEeCCCeEEEEEecCCCCCC
Q 014007 316 QWL-AVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 316 ~~l-~~~~~dg~i~iwd~~~~~~~~ 339 (432)
++| ++++.|+.|++||+.+++.+.
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEE
Confidence 987 566789999999999887543
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-29 Score=234.48 Aligned_cols=258 Identities=13% Similarity=0.142 Sum_probs=193.0
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc---eeEEee-c-------------------------------
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR---CIGELS-F------------------------------- 174 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~---~~~~~~-~------------------------------- 174 (432)
..+.++.|++++.+++++. + +.|++||+.+|+ .+..+. +
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~-----~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-K-----NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKS 78 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-T-----TEEEEEEEETTTEEEEEEEEECCC------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-C-----CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccccc
Confidence 3556778999998777664 4 899999999998 555554 1
Q ss_pred -----------------------CCceEEEEEecCccEE-Ee---CCeEEEEEcC--CCeeeEEEe--eccCCcceEEEe
Q 014007 175 -----------------------RSEVRSVKLRRDRIIV-VL---EQKIFVYNFA--DLKLLHQIE--TIANPKGLCAVS 223 (432)
Q Consensus 175 -----------------------~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~--~~~~~~~~~--~~~~~~~~~~~~ 223 (432)
.+.|.+++|+|++.++ ++ |+.|++||+. +++.+..+. .+...+..++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s 158 (450)
T 2vdu_B 79 NKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA 158 (450)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred CcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence 1259999999999986 43 8999999999 888888776 456778899999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCce-----eeeeccCCceeEEEEcCC---CCEEEEEcCCCceEEEEECCCCceEE
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKRT-----KFIMAHDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGTLLQ 295 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~-----~~~~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~vwd~~~~~~~~ 295 (432)
|+++.++.+ +.+|.|++|++..... ..+.+|...|.+++|+|+ +++|++++.|+. |++||+++++++.
T Consensus 159 p~~~~l~~~---~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 159 EDDTTVIIA---DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIVD 234 (450)
T ss_dssp TTSSEEEEE---ETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCEE
T ss_pred CCCCEEEEE---eCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCceee
Confidence 999865433 3789999999987443 267889999999999999 999999999999 9999999999887
Q ss_pred EEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEE
Q 014007 296 EVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQ 375 (432)
Q Consensus 296 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (432)
.+..+ |...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+........... ..+..+. ...
T Consensus 235 ~~~~~-h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~ 302 (450)
T 2vdu_B 235 KWLFG-HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH------LAPPRFQ----NEN 302 (450)
T ss_dssp EECCC-CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS------BC------------
T ss_pred eeecC-CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcc------ccccccc----ccc
Confidence 75432 77899999999 999999999999999999998874332210000000000000 0000000 000
Q ss_pred EEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEe
Q 014007 376 FRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQF 409 (432)
Q Consensus 376 ~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~ 409 (432)
.......|..++|+|++++|++++ .|+.|++|++
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 112335689999999999999999 8999999999
No 116
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=2.3e-30 Score=243.75 Aligned_cols=204 Identities=15% Similarity=0.097 Sum_probs=165.4
Q ss_pred CcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe--e-cCCceEEEEEec-CccEEEe---CCeEEE
Q 014007 127 GGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL--S-FRSEVRSVKLRR-DRIIVVL---EQKIFV 198 (432)
Q Consensus 127 ~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~--~-~~~~v~~~~~~~-~~~~~~~---d~~i~i 198 (432)
.|...|.+++|+| +...|++|+.| |.|+|||+.+++....+ . |.+.|.+++|+| ++.++++ |++|++
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~d-----g~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKG-----GDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETT-----SCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 4777899999998 45689999999 99999999877654433 3 899999999998 6777773 899999
Q ss_pred EEcCCCeeeEEEeec--cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCC-EEEE
Q 014007 199 YNFADLKLLHQIETI--ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQ-LLAT 275 (432)
Q Consensus 199 ~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~ 275 (432)
||++++........+ ...+.+++|++++..+ ++ |+.||.|++||++.+.+..+.+|...|.+++|+|++. +|++
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~-g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s 268 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMV--VT-GDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLAT 268 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEE--EE-ECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEE--EE-EeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEE
Confidence 999875543333222 2345678999998744 33 4589999999999988888999999999999999876 7889
Q ss_pred EcCCCceEEEEECCCCceEEEEE-eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 276 SSTKGTLVRIFNTLDGTLLQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
|+.|+. |++||+++.+....+. ...|...|++++|+|+|++|++++.||.|+|||+.+++...
T Consensus 269 ~s~d~~-v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 269 ASVDQT-VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp EETTSB-CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred ecCcce-eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 999999 9999998876544332 12377899999999999999999999999999999887543
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=6.8e-29 Score=227.03 Aligned_cols=244 Identities=12% Similarity=0.101 Sum_probs=181.6
Q ss_pred EEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccE
Q 014007 110 IYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRII 189 (432)
Q Consensus 110 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 189 (432)
||++.+.... ..+. .|...|.+++|++++..+++++.+ .+++||+.+++.+....+. .+..+++.+++..
T Consensus 3 i~s~~~~~~~--~~~~-~h~~~V~~v~fs~dg~~la~g~~~------~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 72 (355)
T 3vu4_A 3 LGSMITRNPI--VPEN-HVSNPVTDYEFNQDQSCLILSTLK------SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNY 72 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEECSS------EEEEEEETTEEEEEEEECS-CCCEEEECTTSSE
T ss_pred cccccccCCc--cccc-cCCCceEEEEECCCCCEEEEEcCC------EEEEEecCCcceeeeeecC-CeEEEEEcCCCCE
Confidence 4555444333 2333 688999999999999999998875 5789999887766555433 5788888888776
Q ss_pred EEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ceeeeeccCCceeE
Q 014007 190 VVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RTKFIMAHDSRIAC 263 (432)
Q Consensus 190 ~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~~i~~ 263 (432)
++. |++|++||+.+++.+..+. +...+..+.++++ .++++ .++.|++||+... .+..+.. ....
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~----~~~~i~i~d~~~~~~~~~~~~~---~~~~ 142 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVS----YGDVISVFKFGNPWKRITDDIR---FGGV 142 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEE----ETTEEEEEESSTTCCBSSCCEE---EEEE
T ss_pred EEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEE----EcCEEEEEECCCCceeeEEecc---CCce
Confidence 642 6799999999999998886 5567778888765 33332 3789999999875 3334443 4455
Q ss_pred EEEcCCCCEEEE--EcCCCceEEEEECCCCc----------------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007 264 FALTQDGQLLAT--SSTKGTLVRIFNTLDGT----------------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 264 ~~~sp~~~~l~~--~~~dg~~i~vwd~~~~~----------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
+++++ .++++ |+.||. |++||+.+++ ++..+.. |...|.+++|+|+|++|++|+.||
T Consensus 143 ~~~s~--~~la~~sg~~~g~-v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~d~ 217 (355)
T 3vu4_A 143 CEFSN--GLLVYSNEFNLGQ-IHITKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQDG 217 (355)
T ss_dssp EEEET--TEEEEEESSCTTC-EEEEECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEETTC
T ss_pred EEEEc--cEEEEeCCCcCcE-EEEEECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeCCC
Confidence 66777 56666 588999 9999999865 2555654 778999999999999999999999
Q ss_pred e-EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE-e-cCCCceEEEEccCCCEEEEEecCC
Q 014007 326 T-VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-L-VEGSPYIVAFGHQKNTVVILGMDG 402 (432)
Q Consensus 326 ~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg 402 (432)
+ |+|||+++++. +..+. + |.+.|++++|+|++++|++++.||
T Consensus 218 ~~v~iwd~~~~~~-----------------------------------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~ 262 (355)
T 3vu4_A 218 TIIRVFKTEDGVL-----------------------------------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKW 262 (355)
T ss_dssp SEEEEEETTTCCE-----------------------------------EEEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred CEEEEEECCCCcE-----------------------------------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence 8 99999998763 34566 4 889999999999999999999999
Q ss_pred eEEEEEecCCC
Q 014007 403 SFYRCQFDPVN 413 (432)
Q Consensus 403 ~v~iw~~~~~~ 413 (432)
.|++|++....
T Consensus 263 ~v~iw~~~~~~ 273 (355)
T 3vu4_A 263 TLHVFEIFNDQ 273 (355)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEEccCCC
Confidence 99999996643
No 118
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1.1e-28 Score=230.02 Aligned_cols=242 Identities=11% Similarity=0.106 Sum_probs=187.9
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC---CeEEEecCCCCCCCCCC
Q 014007 82 SSPPPTLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC---NILALVGGGPDPQYPLN 156 (432)
Q Consensus 82 ~~~~~~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~~~d~~~~~~ 156 (432)
..|...|++++|+| ++.+|++++ ++.|++|++.+.+... .+. +...+..+.+.+ ++..+++++.+ +
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 166 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD--VFN--FEETVYSHHMSPVSTKHCLVAVGTRG-----P 166 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE--EEE--CSSCEEEEEECSSCSSCCEEEEEESS-----S
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce--ecc--CCCceeeeEeecCCCCCcEEEEEcCC-----C
Confidence 46999999999999 777888888 5559999999887663 333 556677777766 55588888888 9
Q ss_pred eEEEEeCCCCceeEEee-cCCceEEEEEecCccE-EEe---CCeEEEEEcCCCe-eeEEE---------------eeccC
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRII-VVL---EQKIFVYNFADLK-LLHQI---------------ETIAN 215 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~---d~~i~i~d~~~~~-~~~~~---------------~~~~~ 215 (432)
.|++||+.+++.+..+. |...|.+++|+|++.. +++ |+.|++||++++. .+..+ ..+..
T Consensus 167 ~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp SEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred eEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 99999999999998888 9999999999999873 542 8999999998765 33333 45777
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eec-----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~-----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
.+..++|+|+++.++. ++.|+.|++||+.+..... ... ....+........+..+++++.++. |++||+.
T Consensus 247 ~v~~~~~~~~~~~l~~---~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~d~~ 322 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLT---VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST-IAVYTVY 322 (408)
T ss_dssp CEEEEEECTTSSEEEE---EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE-EEEEETT
T ss_pred ceeEEEEcCCCCEEEE---ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE-EEEEECc
Confidence 8899999999875543 3479999999998854322 111 1122222223344556777788999 9999999
Q ss_pred CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
+++++..+.. |...|.+++|+|++++|++++.||.|++||+.+.+.+
T Consensus 323 ~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 323 SGEQITMLKG--HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp TCCEEEEECC--CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred CCcceeeecc--CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 9999999875 6689999999999999999999999999999998754
No 119
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-31 Score=244.42 Aligned_cols=276 Identities=8% Similarity=-0.015 Sum_probs=198.8
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
..+|...|.+++|+|+| .++.+.+|+ .+......+ .+...|.+++|+|++..+++++.| |.|++
T Consensus 48 l~gh~~~v~~V~FsPdg------~~~~~~~~~---~~~~~~~~~--~~~~~V~~vawSPdG~~LAs~s~d-----g~V~i 111 (588)
T 2j04_A 48 INCNSKNLFHVKEFPLE------FENKLDFEL---AQQNGLLNS--QPVCYPRVCKPSPIDDWMAVLSNN-----GNVSV 111 (588)
T ss_dssp CSSBGGGTEEEEEECCC------CCCTTTTSC---CCSSCSSTT--SCSCCEEEEEECSSSSCEEEEETT-----SCEEE
T ss_pred ecCCCccEEEEEECCCC------CcceEEEEe---CCCceEeec--CCCCcEEEEEECCCCCEEEEEeCC-----CcEEE
Confidence 36899999999999999 344444454 333222333 358899999999999999999999 99999
Q ss_pred EeCCCCceeEEeecCC-----ceEEEEEecCccEEEe---CCeEEEEEcCCCe-------eeEEE----eeccCCcceEE
Q 014007 161 WDDHQSRCIGELSFRS-----EVRSVKLRRDRIIVVL---EQKIFVYNFADLK-------LLHQI----ETIANPKGLCA 221 (432)
Q Consensus 161 wd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~-------~~~~~----~~~~~~~~~~~ 221 (432)
||... ++..+.|.. .|.+++|+|||+++++ ||+|++||+.++. .+..+ .+|.+.|..++
T Consensus 112 wd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVa 189 (588)
T 2j04_A 112 FKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIV 189 (588)
T ss_dssp EETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEE
T ss_pred EeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEE
Confidence 99544 555555443 5999999999999994 8999999998875 35666 44567899999
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCce----eee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
|+|+| + ++ + +.|+.|++||+.++.. ..+ .+|...|.+++|+ |++||+++ +++ |++||+.+++....
T Consensus 190 wSPdg--L-aa-s-s~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~ 260 (588)
T 2j04_A 190 WYEDV--L-VA-A-LSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSL 260 (588)
T ss_dssp EETTE--E-EE-E-ETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEE
T ss_pred EcCCc--E-EE-E-eCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEE
Confidence 99998 3 33 2 3699999999988664 345 4788999999999 68899887 688 99999988776433
Q ss_pred EEeCCCcCceEEEEE--CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEee-cccceeecceee
Q 014007 297 VRRGADRAEIYSLAF--SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKG-VLPKYFSSEWSV 373 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 373 (432)
..+ |...+..++| +||+..|+++++||+ ++|..+.-. ..++........ .+..+......+
T Consensus 261 ~~g--h~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~-------------~spd~~l~a~~d~~v~lW~~~g~~l 324 (588)
T 2j04_A 261 KTG--SLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH-------------VTADNIIAPYLEKKFKKWSTIWNEF 324 (588)
T ss_dssp ECS--CCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE-------------EECCCSSHHHHHHHHHHTTTTTTSS
T ss_pred EcC--CCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE-------------ECCCceEEEEcCCEEEEEECCCCce
Confidence 323 7789999999 999999999999999 999986211 011111100000 000000000001
Q ss_pred EEEEecCCCceEEEEccCCCEEEEEec
Q 014007 374 AQFRLVEGSPYIVAFGHQKNTVVILGM 400 (432)
Q Consensus 374 ~~~~~~~~~v~~~~~s~~~~~l~~~~~ 400 (432)
..+.. ...|.+++|||||+.+|+++.
T Consensus 325 ~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 325 NNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp SSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred eeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 11112 334899999999999998875
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=1.6e-27 Score=224.19 Aligned_cols=279 Identities=11% Similarity=0.087 Sum_probs=216.7
Q ss_pred CCCCeEEEE---EcCCCCEEEEEc---------------CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEE
Q 014007 84 PPPTLLHIS---FNQDHGCFAAGT---------------DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILA 143 (432)
Q Consensus 84 ~~~~v~~~~---~s~~~~~l~~~~---------------~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (432)
....+..++ |+|++..+.+.. ++.++||.++. ........+. ....+.+++|++++.+
T Consensus 59 ~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~ 136 (433)
T 3bws_A 59 KNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRL 136 (433)
T ss_dssp TTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEE
T ss_pred cCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeE
Confidence 345678888 888877655432 11135665543 4333334443 3344568889998889
Q ss_pred EecCCCCCCCCCCeEEEEeCCCCceeEEe-----e-cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeecc
Q 014007 144 LVGGGPDPQYPLNKVMIWDDHQSRCIGEL-----S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIA 214 (432)
Q Consensus 144 ~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-----~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~ 214 (432)
+++++.+ +.|++||+.+++.+..+ . |...|.+++|++++.++++ |+.|++||+++++.+..+..+.
T Consensus 137 ~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~ 211 (433)
T 3bws_A 137 AIPLLED-----EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTG 211 (433)
T ss_dssp EEEBTTS-----SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS
T ss_pred EEEeCCC-----CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCC
Confidence 9998888 99999999999887633 3 6778999999999988874 7999999999999998888888
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc--------CCCceEEEE
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS--------TKGTLVRIF 286 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--------~dg~~i~vw 286 (432)
..+..++|+|+++.++++ +..++.|++||++++.......+...+.+++|+|+|++|++++ .|+. |++|
T Consensus 212 ~~~~~~~~~~~~~~l~~~--~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~-i~~~ 288 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCS--NWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGR-LGIY 288 (433)
T ss_dssp SSEEEEEEETTTTEEEEE--ETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEE-EEEE
T ss_pred CCeeEEEEcCCCCEEEEE--ecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCe-EEEE
Confidence 889999999999876544 3478999999998866554444556799999999999999888 4788 9999
Q ss_pred ECCCCceEEEEEeCCCcCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccc
Q 014007 287 NTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL-AVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPK 365 (432)
Q Consensus 287 d~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (432)
|+.+++.+..+. +...+.+++|+|+++.+ ++++.|+.|++||+.+++.
T Consensus 289 d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~---------------------------- 337 (433)
T 3bws_A 289 SMDKEKLIDTIG---PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV---------------------------- 337 (433)
T ss_dssp ETTTTEEEEEEE---EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE----------------------------
T ss_pred ECCCCcEEeecc---CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE----------------------------
Confidence 999998887775 44678999999999755 5668999999999987652
Q ss_pred eeecceeeEEEEecCCCceEEEEccCCCEEEEEec---------------CCeEEEEEecC
Q 014007 366 YFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM---------------DGSFYRCQFDP 411 (432)
Q Consensus 366 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~v~iw~~~~ 411 (432)
...+ .+...+..++|+|++++|++++. ||.|++|++..
T Consensus 338 -------~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 338 -------QKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp -------EEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred -------EEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence 1122 25567899999999999998887 57999988743
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-29 Score=226.31 Aligned_cols=232 Identities=16% Similarity=0.209 Sum_probs=178.2
Q ss_pred EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcC---------C
Q 014007 135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFA---------D 203 (432)
Q Consensus 135 ~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~---------~ 203 (432)
..+..++..+++++.| |.|++||+.+++.+..+. ...|.++.++|+ ++. .|++|++|+.. +
T Consensus 42 ~~~~~d~~~l~sg~~D-----g~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~ 113 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCED-----GALHFTQLKDSKTITTIT-TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKT 113 (343)
T ss_dssp SSSSEEEEEEEEEEET-----TEEEEEEESSSSCEEEEE-EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCC-----CcEEEEECCCCcEEEEEe-cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCC
Confidence 3455678899999999 999999999998888776 456777777777 333 27788888654 5
Q ss_pred CeeeEEEe-eccCCcceEEEec--CCCcEEEEeecCCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEEEcC
Q 014007 204 LKLLHQIE-TIANPKGLCAVSQ--GVGSLVLVCPGLQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 204 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
++.+..+. .|...+..++++| +++.+ ++ ++.||.|++||++++..... ..|...|.+++|+|+|.+|++|+.
T Consensus 114 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~s-~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~ 190 (343)
T 3lrv_A 114 NKVLREIEVDSANEIIYMYGHNEVNTEYF--IW-ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSP 190 (343)
T ss_dssp CCEEEEEECCCSSCEEEEECCC---CCEE--EE-EETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECT
T ss_pred cceeEEeecCCCCCEEEEEcCCCCCCCEE--EE-EeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcC
Confidence 55455544 4557799999999 77644 33 34899999999998665433 245668999999999999999999
Q ss_pred CCceEEEEECCCCceE-EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007 279 KGTLVRIFNTLDGTLL-QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS 357 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
|+. |++||+++++.+ ..+.. .|...|.+++|+|+|.+|++++ |+.|++||+++.+....+..
T Consensus 191 dg~-i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-------------- 253 (343)
T 3lrv_A 191 DGI-LDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-------------- 253 (343)
T ss_dssp TSC-EEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC--------------
T ss_pred CCE-EEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc--------------
Confidence 999 999999999887 67764 2678999999999999999999 55999999998875432210
Q ss_pred eEeecccceeecceeeEEEEecCCCc--eEEEEccCCCEEEEEec-CCeEEEEEecCC
Q 014007 358 FIKGVLPKYFSSEWSVAQFRLVEGSP--YIVAFGHQKNTVVILGM-DGSFYRCQFDPV 412 (432)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~ 412 (432)
+..|...+ .+++|+|+|++|++++. |+.+++|+++..
T Consensus 254 ------------------~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 254 ------------------YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ------------------CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ------------------cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 11122223 46999999999999998 999999999654
No 122
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=3.8e-28 Score=228.63 Aligned_cols=227 Identities=15% Similarity=0.294 Sum_probs=195.2
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
++...|.++.+ ++..+++++.| |.|++||+.+++.+..+. |...|.+++| ++.++++ ||.|++||+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRD-----NTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESS-----SCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred CCCCcEEEEEE--CCCEEEEEeCC-----CeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 46667888877 56788888888 999999999999999998 9999999999 5666663 8999999999
Q ss_pred CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce----eeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007 203 DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT----KFIMAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
+++.+..+..|...+..+++++ + .+++ |+.||.|++||+++... ..+.+|...|.+++| ++++|++|+.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~~--~--~l~s-~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFNN--G--MMVT-CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECCT--T--EEEE-EETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCcEEEEEcCCCCcEEEEEEcC--C--EEEE-eeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999888888864 3 3343 44899999999987543 456789999999999 7889999999
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
|+. |++||+++++++..+.. |...|.++.| ++++|++|+.||.|++||+++++.
T Consensus 275 dg~-i~vwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~--------------------- 328 (435)
T 1p22_A 275 DRT-IKVWNTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC--------------------- 328 (435)
T ss_dssp TSE-EEEEETTTCCEEEEEEC--CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCE---------------------
T ss_pred CCe-EEEEECCcCcEEEEEcC--CCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCE---------------------
Confidence 999 99999999999999985 6688999999 568999999999999999998762
Q ss_pred EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+.+|.+.|.+++| ++++|++|+.||.|++|++..
T Consensus 329 --------------~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~ 365 (435)
T 1p22_A 329 --------------LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVA 365 (435)
T ss_dssp --------------EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHH
T ss_pred --------------EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCC
Confidence 4457788999999998 789999999999999999854
No 123
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=8.2e-28 Score=224.33 Aligned_cols=280 Identities=13% Similarity=0.059 Sum_probs=206.0
Q ss_pred CCeEEEEEcCCCC-EEEEEc-----CC----cEEEEEc--CCCeeEEEeecccCcceeEEEEeeeC--------------
Q 014007 86 PTLLHISFNQDHG-CFAAGT-----DH----GFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRC-------------- 139 (432)
Q Consensus 86 ~~v~~~~~s~~~~-~l~~~~-----~~----~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~-------------- 139 (432)
..|....|++.|. ++++|+ ++ .|+|||+ .+++......+. +|...+..+++.+
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4677788988886 555664 34 5999999 888766555565 5655565555542
Q ss_pred -C-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---C---CeEEEEEcCCCeeeEEE
Q 014007 140 -N-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---E---QKIFVYNFADLKLLHQI 210 (432)
Q Consensus 140 -~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d---~~i~i~d~~~~~~~~~~ 210 (432)
. ..++++...... ..+.|++||+..+ ....+. |...+.+++|+|+|+.+++ + ..|++||+.+++.. .+
T Consensus 142 ~~~~l~~~s~~~~~~-~~~~i~i~d~~g~-~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l 218 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQ-FPYELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 218 (415)
T ss_dssp TTCEEEEEEECSSSS-CCEEEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred CCCEEEEEEecCCCC-ccceEEEEcCCCC-CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence 2 233333321100 0158999998754 445555 8999999999999998873 4 38999999988765 45
Q ss_pred eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC-C--ceEEEEE
Q 014007 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK-G--TLVRIFN 287 (432)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g--~~i~vwd 287 (432)
..+...+..++|+|+|+.++++.....+..|++||+.++....+..|...+.+++|+|||++|++++.+ + . |++||
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~-i~~~d 297 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQ-VYKVN 297 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCE-EEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcE-EEEEE
Confidence 566778889999999997765543223445999999998888888899999999999999999888764 4 5 88889
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
+.+++.. .+.. +...+.+++|+|||++|++++.+ +.|++||+.+++.
T Consensus 298 ~~~~~~~-~l~~--~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--------------------------- 347 (415)
T 2hqs_A 298 INGGAPQ-RITW--EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--------------------------- 347 (415)
T ss_dssp TTSSCCE-ECCC--SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------------------
T ss_pred CCCCCEE-EEec--CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---------------------------
Confidence 9888753 3332 44678999999999999988754 5899999988762
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC---eEEEEEec
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG---SFYRCQFD 410 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~v~iw~~~ 410 (432)
..+..+. .+..++|+|||++|++++.++ .|++|+++
T Consensus 348 ---------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 348 ---------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp ---------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred ---------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 1223333 688999999999999988876 67777764
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=3.7e-27 Score=216.35 Aligned_cols=245 Identities=13% Similarity=0.127 Sum_probs=188.4
Q ss_pred eecccCcceeEEEEeeeCC---eEEEecCCCCCCCCCCeEEEEeCCC-Ccee-EEee-cCCceEEEEEecCccEEEe---
Q 014007 122 RDFERGGGIGVVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQ-SRCI-GELS-FRSEVRSVKLRRDRIIVVL--- 192 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~---~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~-~~~~-~~~~v~~~~~~~~~~~~~~--- 192 (432)
..+. +|...|.+++|+++ +..+++++.| +.|++||+.+ +..+ ..+. |...|.+++|+|++.++++
T Consensus 33 ~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 33 EVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp ECSS-CCSSCEEEEEECCTTSSSEEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred Eecc-CCCCceEEEEEcCCCCCceEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 3444 79999999999999 5999999999 9999999987 5554 5555 9999999999999988874
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEE--ecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCC
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDG 270 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~ 270 (432)
|+.|++||+.+++.+. +..|...+..++| ++++. ++++ ++.|+.|++||+++............+.++.+.+
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~--~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-- 180 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYS--CVMT-GSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-- 180 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCE--EEEE-EETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCC--EEEE-ccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--
Confidence 8999999999988766 4568899999999 55554 3443 3489999999998855443333344667776654
Q ss_pred CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCE----EEEEeCCCeEEEEEecCCCCCCCCCCCCC
Q 014007 271 QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQW----LAVSSDKGTVHVFNLKVNSGSARSEPRST 346 (432)
Q Consensus 271 ~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 346 (432)
..+++++.++. +++||++............+...+..+.+.++... +++++.||.|++||++......
T Consensus 181 ~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~------- 252 (368)
T 3mmy_A 181 PMAVVATAERG-LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAK------- 252 (368)
T ss_dssp TEEEEEEGGGC-EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHH-------
T ss_pred CeeEEEeCCCc-EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccc-------
Confidence 47888889999 99999988765544443334456667776665544 9999999999999998764100
Q ss_pred CCCCCCCCCceeEeecccceeecceeeEEEEecC------------CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 347 SDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE------------GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
....+..|. ..|++++|+|++++|++++.||.|++|++..
T Consensus 253 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 253 -------------------------DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp -------------------------HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred -------------------------cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 012233333 3799999999999999999999999999853
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=4e-27 Score=206.49 Aligned_cols=240 Identities=13% Similarity=0.084 Sum_probs=170.8
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEEc-CC---c-EEEEEcCCC----eeEEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAGT-DH---G-FRIYNCDPF----REIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~~-~~---~-i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (432)
.....+|..+|..+.+.||-.-|++.. .+ . |+..-+.+. .... ..+++...+..+ +++..+.++.
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l---~s~g~~~~v~~l---~~g~lv~ss~ 152 (356)
T 2w18_A 79 LYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL---LKSGNIKAVLGL---TKRRLVSSSG 152 (356)
T ss_dssp EEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE---EEEEEEEEEEEE---TTTEEEEEES
T ss_pred eEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE---EeCCCeEEEEec---CCCcEEEecc
Confidence 356777888899999988765333322 11 1 333322232 2221 112455556554 5677776633
Q ss_pred --CCCCCCCCeEEEEeC-CCCceeEEee-cCCceEEEEEec---CccEEEe---CCeEEEEEcCCCeeeEEEeeccC---
Q 014007 149 --PDPQYPLNKVMIWDD-HQSRCIGELS-FRSEVRSVKLRR---DRIIVVL---EQKIFVYNFADLKLLHQIETIAN--- 215 (432)
Q Consensus 149 --~d~~~~~~~v~iwd~-~~~~~~~~~~-~~~~v~~~~~~~---~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~--- 215 (432)
.| +.|++|++ .+|+.+..+. |...+..++|++ ++.++++ |++|+|||++++++++++..+..
T Consensus 153 ~g~d-----~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~ 227 (356)
T 2w18_A 153 TLSD-----QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA 227 (356)
T ss_dssp SSTT-----CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---C
T ss_pred cCCC-----CcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCccee
Confidence 56 99999999 4588888777 899999999999 6788885 99999999999999999976543
Q ss_pred CcceEEEecCCCcEEE---------EeecCCCCcEEEEEccCCceee-e-----eccCCceeEEEEcCCCCEEEEEcCCC
Q 014007 216 PKGLCAVSQGVGSLVL---------VCPGLQKGQVRVEHYASKRTKF-I-----MAHDSRIACFALTQDGQLLATSSTKG 280 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~---------~~~g~~d~~i~i~d~~~~~~~~-~-----~~~~~~i~~~~~sp~~~~l~~~~~dg 280 (432)
.+..++|+|++..++. +.+|+.|++|++||..++.... + .+|...+.+..+ ++.++++++.|+
T Consensus 228 ~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~Dg 305 (356)
T 2w18_A 228 SVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSG 305 (356)
T ss_dssp CCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTS
T ss_pred eeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCC
Confidence 4556689999875532 2346789999999998865432 2 256555554444 478999999999
Q ss_pred ceEEEEECCCCceEEEEEeCCCcCc-eEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 281 TLVRIFNTLDGTLLQEVRRGADRAE-IYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 281 ~~i~vwd~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+ |+|||+.+++++.++.+ |... +..++|+|||++|++|+.|++|+|||+.
T Consensus 306 T-IkIWDl~tGk~l~tL~g--H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 306 T-IAIWDLLLGQCTALLPP--VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp C-EEEEETTTCSEEEEECC--C--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred c-EEEEECCCCcEEEEecC--CCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 9 99999999999999985 3344 4568999999999999999999999963
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=7.8e-26 Score=217.39 Aligned_cols=281 Identities=11% Similarity=0.093 Sum_probs=216.6
Q ss_pred EEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC--CCCce
Q 014007 92 SFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD--HQSRC 168 (432)
Q Consensus 92 ~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~--~~~~~ 168 (432)
.|+|++.+++++. ++.|.+||..+++.. ..+..++. +..+.|++++..+++++.+ +.|++||+ .+++.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~--~~i~~g~~--~~~v~~spdg~~l~v~~~d-----~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV--KVIDTGYA--VHISRMSASGRYLLVIGRD-----ARIDMIDLWAKEPTK 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE--EEEECSTT--EEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE--EEEecCcc--cceEEECCCCCEEEEECCC-----CeEEEEECcCCCCcE
Confidence 4899998888887 555999999888766 44442333 7788999999999999988 99999999 88999
Q ss_pred eEEeecCCceEEEEEec----CccEEEe----CCeEEEEEcCCCeeeEEEeecc-----------CCcceEEEecCCCcE
Q 014007 169 IGELSFRSEVRSVKLRR----DRIIVVL----EQKIFVYNFADLKLLHQIETIA-----------NPKGLCAVSQGVGSL 229 (432)
Q Consensus 169 ~~~~~~~~~v~~~~~~~----~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 229 (432)
+.++.+...+..++|+| +|+++++ +++|.+||..++++++.+.... ..+..+.+++++..+
T Consensus 215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 98888777889999999 9988773 7899999999999988886521 256678999988876
Q ss_pred EEEeecCCCCcEEEEEccCCce-e-eeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCC--CcC
Q 014007 230 VLVCPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGA--DRA 304 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~-~-~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~--~~~ 304 (432)
++. ...++.|.+||+..... . ....+...+..+.|+|+|++|+++ ..+++ |.+||+.+++++..+..+. |..
T Consensus 295 ~vs--~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g 371 (543)
T 1nir_A 295 IVN--VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPG 371 (543)
T ss_dssp EEE--ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCT
T ss_pred EEE--ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCC
Confidence 554 35789999999987432 2 123466778999999999987655 45788 9999999999999887532 333
Q ss_pred ceEEEEECCC-CCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCC
Q 014007 305 EIYSLAFSSN-AQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGS 382 (432)
Q Consensus 305 ~i~~~~~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (432)
....+ ++|+ |..++++. .|++|.+||+.+..... .....+.++..|.+.
T Consensus 372 ~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~----------------------------~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 372 RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ----------------------------YAWKKVAELQGQGGG 422 (543)
T ss_dssp TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT----------------------------TBTSEEEEEECSCSC
T ss_pred CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch----------------------------hcCeEEEEEEcCCCC
Confidence 33333 4677 66667765 68999999998732100 001125678888888
Q ss_pred ceEEEEccCCCEEEEEe-------cCCeEEEEEecCCC
Q 014007 383 PYIVAFGHQKNTVVILG-------MDGSFYRCQFDPVN 413 (432)
Q Consensus 383 v~~~~~s~~~~~l~~~~-------~dg~v~iw~~~~~~ 413 (432)
+..++|+||+++|++++ .+++|.+|+++..+
T Consensus 423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 89999999999999987 37899999986543
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=1.2e-25 Score=216.08 Aligned_cols=297 Identities=14% Similarity=0.117 Sum_probs=219.5
Q ss_pred eEEEEEcCCCCEEEEEc-CCcEEEEEc--CCCeeEEEeecccCcceeEEEEeeeC----CeEEEecCC-CCCCCCCCeEE
Q 014007 88 LLHISFNQDHGCFAAGT-DHGFRIYNC--DPFREIFRRDFERGGGIGVVEMLFRC----NILALVGGG-PDPQYPLNKVM 159 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~-~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~s~~-~d~~~~~~~v~ 159 (432)
+.+++|+|||++|++++ ++.|++||+ .+++.. ..+. +......++|++ ++..+++++ .+ ++|.
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~--~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~ 251 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV--AEIK--IGIEARSVESSKFKGYEDRYTIAGAYWP-----PQFA 251 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE--EEEE--CCSEEEEEEECCSTTCTTTEEEEEEEES-----SEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE--EEEe--cCCCcceEEeCCCcCCCCCEEEEEEccC-----CeEE
Confidence 88999999999999888 555999999 666554 5554 455678999999 888777766 35 8999
Q ss_pred EEeCCCCceeEEeec------------CCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeE--EEeeccCCcceEE
Q 014007 160 IWDDHQSRCIGELSF------------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLH--QIETIANPKGLCA 221 (432)
Q Consensus 160 iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~ 221 (432)
+||..+++++.++.. ...+.++.+++++..++ . ++.|.+||+.+.+.+. .+. +......+.
T Consensus 252 v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~ 330 (543)
T 1nir_A 252 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGG 330 (543)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEE
T ss_pred EEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCce
Confidence 999999998888762 22688999999876555 2 7899999998865544 443 345567899
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCceee-eec----cCCceeEEEEcCC-CCEEEEEc-CCCceEEEEECCC----
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMA----HDSRIACFALTQD-GQLLATSS-TKGTLVRIFNTLD---- 290 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~----~~~~i~~~~~sp~-~~~l~~~~-~dg~~i~vwd~~~---- 290 (432)
|+|++++++++. ..++.|.+||..++++.. +.. |.+....+ ++|+ |.+++++. .|++ |.+||+.+
T Consensus 331 ~spdg~~l~va~--~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~ 406 (543)
T 1nir_A 331 WDSSHRYFMTAA--NNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHP 406 (543)
T ss_dssp ECTTSCEEEEEE--GGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCT
T ss_pred ECCCCCEEEEEe--cCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCc
Confidence 999999776543 457899999999866543 332 55444444 4677 66677765 5788 99999998
Q ss_pred ---CceEEEEEeCCCcCceEEEEECCCCCEEEEEe-------CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEe
Q 014007 291 ---GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-------DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIK 360 (432)
Q Consensus 291 ---~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
+++++++.. +...+..++|+|+|++|++++ .+++|.+||+.+++....
T Consensus 407 ~~~~~~v~~l~~--~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~-------------------- 464 (543)
T 1nir_A 407 QYAWKKVAELQG--QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ-------------------- 464 (543)
T ss_dssp TTBTSEEEEEEC--SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCE--------------------
T ss_pred hhcCeEEEEEEc--CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeE--------------------
Confidence 899999996 446788899999999999987 267999999999874310
Q ss_pred ecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-----cCCeEEEEEecCCCCCcceEeeecccCCC
Q 014007 361 GVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-----MDGSFYRCQFDPVNGGEMTQLEYNNFLKP 428 (432)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 428 (432)
.++ ...| .-+..+...+..++|+|+|+.|+++. .|+.|.||| .++++.+..++..++..+
T Consensus 465 -~~~---v~~~--~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D--~~t~~~~~~i~~~~~~~p 529 (543)
T 1nir_A 465 -VLP---IAEW--ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD--DKTLKLKAVVKDPRLITP 529 (543)
T ss_dssp -EEC---HHHH--HCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE--TTTTEEEEEECCTTCCSE
T ss_pred -Eee---chhh--cccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE--CCCceEEEeecCCCccCC
Confidence 000 0000 00123345688999999999998763 479999966 477777777776555443
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.95 E-value=2e-25 Score=224.30 Aligned_cols=284 Identities=13% Similarity=0.049 Sum_probs=209.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEc--CC-----cEEEEEcCCCeeEEEeecccCcc----------------------eeEEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGT--DH-----GFRIYNCDPFREIFRRDFERGGG----------------------IGVVE 134 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~--~~-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~v~~ 134 (432)
....|.+++|||||++|++++ ++ .|++||+++++........ .+. ..+..
T Consensus 35 ~~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 35 SGPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSK-VVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp TCCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGG-GTC--------------------CCEESCC
T ss_pred CCCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchh-hcccccccccchhhhhhhhhhhccccCcce
Confidence 356799999999999998876 44 4999999887765333222 111 34788
Q ss_pred EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC---ceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEE
Q 014007 135 MLFRCNILALVGGGPDPQYPLNKVMIWDDHQS---RCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQ 209 (432)
Q Consensus 135 ~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~ 209 (432)
+.|+|++..++.++. +.|++||+.++ +......+...+..++|+|||++++ .++.|++||+.+++....
T Consensus 114 ~~~SpDg~~l~~~~~------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL 187 (741)
T ss_dssp CEECTTSSEEEEEET------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred eEECCCCCEEEEEeC------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence 999999998887764 79999999888 4443333778899999999999887 488999999998876554
Q ss_pred EeeccCC----------------cceEEEecCCCcEEEEeecCC------------------------------CCcEEE
Q 014007 210 IETIANP----------------KGLCAVSQGVGSLVLVCPGLQ------------------------------KGQVRV 243 (432)
Q Consensus 210 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~------------------------------d~~i~i 243 (432)
...+... +..++|+|||+.++++..... ...|.+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4333221 367999999998876642110 017888
Q ss_pred EEccC-Cceeeee---ccCCceeEEEEcCCCCEEEEEcC-----CCceEEEEECCCCceEEEEEeCCCcC---ceEEEEE
Q 014007 244 EHYAS-KRTKFIM---AHDSRIACFALTQDGQLLATSST-----KGTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAF 311 (432)
Q Consensus 244 ~d~~~-~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~-----dg~~i~vwd~~~~~~~~~~~~~~~~~---~i~~~~~ 311 (432)
||+.+ +....+. .|...+..++| |||++|++++. +.. |++||+.++++...+..+. .. .+..++|
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~ 344 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHETS-PTWVPLHNSLRF 344 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEEC-SSCCCCCSCCEE
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcCC-CCcCCcCCceEE
Confidence 89888 7665543 47788999999 99999987654 456 9999999999887776432 12 3468999
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE-EEcc
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV-AFGH 390 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~ 390 (432)
+|||+++++++.||.++||.+..... ...+..+...|..+ +|+|
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-----------------------------------~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-----------------------------------AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-----------------------------------EEESCCSSSCEEEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-----------------------------------eeeeeecceEEEeEeEEeC
Confidence 99999999999999888888763220 11233445557666 6999
Q ss_pred CCCEEEE-EecCC--eEEEEEecCC
Q 014007 391 QKNTVVI-LGMDG--SFYRCQFDPV 412 (432)
Q Consensus 391 ~~~~l~~-~~~dg--~v~iw~~~~~ 412 (432)
||+.|+. ++.++ .++||+++..
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVPLQ 414 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEETT
T ss_pred CCCEEEEEEeCCCCceEEEEEEEcC
Confidence 9998765 44455 8999999764
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=9.3e-26 Score=210.45 Aligned_cols=237 Identities=12% Similarity=0.064 Sum_probs=185.7
Q ss_pred CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec
Q 014007 106 HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR 185 (432)
Q Consensus 106 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~ 185 (432)
+.|++||++.... ..+. +|...+.+++|+|++..+++++.+. ....|++||+.+++......+...+.+++|+|
T Consensus 159 ~~i~i~d~~g~~~---~~l~-~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQ---FVVH-RSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPRHNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSC---EEEE-EESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSSCEEEEEECT
T ss_pred ceEEEEcCCCCCC---EEEe-CCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEEeecCCCcccCEEEcC
Confidence 3599999975432 3333 4778899999999999888877650 01399999999998765555888999999999
Q ss_pred CccEEE-e---C--CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccCCceeeeecc
Q 014007 186 DRIIVV-L---E--QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYASKRTKFIMAH 257 (432)
Q Consensus 186 ~~~~~~-~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~~~~~~~~~~ 257 (432)
||..++ + + ..|++||+.+++. ..+..+...+..++|+|+++.+++++ ..++ .|.+||+.++....+..+
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s--~~~g~~~i~~~d~~~~~~~~l~~~ 309 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNINGGAPQRITWE 309 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTSSCCEECCCS
T ss_pred CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEE--CCCCCcEEEEEECCCCCEEEEecC
Confidence 998776 3 3 3599999988765 45666777788999999998776654 2344 677789888777777778
Q ss_pred CCceeEEEEcCCCCEEEEEcCC---CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC---eEEEEE
Q 014007 258 DSRIACFALTQDGQLLATSSTK---GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG---TVHVFN 331 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d---g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg---~i~iwd 331 (432)
...+.+++|+|+|++|++++.+ .. |++||+.+++.. .+.. + ..+.+++|+|||++|++++.++ .|++||
T Consensus 310 ~~~~~~~~~spdG~~l~~~~~~~g~~~-i~~~d~~~~~~~-~l~~--~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 310 GSQNQDADVSSDGKFMVMVSSNGGQQH-IAKQDLATGGVQ-VLSS--T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SSEEEEEEECTTSSEEEEEEECSSCEE-EEEEETTTCCEE-ECCC--S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCcccCeEECCCCCEEEEEECcCCceE-EEEEECCCCCEE-EecC--C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 8889999999999999988865 46 999999988874 3432 3 3799999999999999988766 799999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 332 LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
+.... ...+..|.+.|..++|+|.-
T Consensus 385 ~~g~~------------------------------------~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 385 TDGRF------------------------------------KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTSCC------------------------------------EEECCCSSSEEEEEEECCCC
T ss_pred CCCCc------------------------------------EEEeeCCCCCCcCCcccccc
Confidence 87554 34566788899999999954
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.94 E-value=1.7e-23 Score=191.08 Aligned_cols=266 Identities=14% Similarity=0.116 Sum_probs=202.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEc--------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCC
Q 014007 84 PPPTLLHISFNQDHGCFAAGT--------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYP 154 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~--------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~ 154 (432)
....+..++|+|+|++|++++ ++.|.+||..+++... .+. .......+.+++++. ++++...+
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~--~~~~~~~~~~s~dg~~l~v~~~~~---- 110 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ--AIH--NDLKPFGATINNTTQTLWFGNTVN---- 110 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE--EEE--ESSCCCSEEEETTTTEEEEEETTT----
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE--EEe--cCCCcceEEECCCCCEEEEEecCC----
Confidence 345788999999999888776 2349999998877653 333 223466788899876 55566666
Q ss_pred CCeEEEEeCCCCceeEEeec-CC---------ceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcce
Q 014007 155 LNKVMIWDDHQSRCIGELSF-RS---------EVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGL 219 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~~~~~~-~~---------~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (432)
+.|.+||..+++.+..+.. .. .+.+++|+|++..++. ++.|.+||+.+++.+..+..+......
T Consensus 111 -~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTG 189 (353)
T ss_dssp -TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCC
T ss_pred -CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccce
Confidence 8999999999998888873 21 2788999999886652 578999999999988888755555778
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeec----cCCceeEEEEcCCCCEEEEEcCC-CceEEEEECCCCce
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----HDSRIACFALTQDGQLLATSSTK-GTLVRIFNTLDGTL 293 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~----~~~~i~~~~~sp~~~~l~~~~~d-g~~i~vwd~~~~~~ 293 (432)
++|+|+++.++++. .++.|.+||..+.... .+.. +...+..++|+|+|++|++++.+ +. |.+||+.+++.
T Consensus 190 ~~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-v~~~d~~~~~~ 265 (353)
T 3vgz_A 190 LALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAE-VLVVDTRNGNI 265 (353)
T ss_dssp CEEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSE-EEEEETTTCCE
T ss_pred EEECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCE-EEEEECCCCcE
Confidence 99999999876653 5899999999886544 3332 45568899999999987776654 77 99999999999
Q ss_pred EEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS 372 (432)
Q Consensus 294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (432)
+..+..+ . ...++|+|+|++++++. .++.|.+||+.+++.+
T Consensus 266 ~~~~~~~---~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~---------------------------------- 307 (353)
T 3vgz_A 266 LAKVAAP---E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVV---------------------------------- 307 (353)
T ss_dssp EEEEECS---S-CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEE----------------------------------
T ss_pred EEEEEcC---C-CceEEECCCCCEEEEEECCCCeEEEEECCCCeEE----------------------------------
Confidence 9888853 2 25699999999766655 7899999999887621
Q ss_pred eEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 402 (432)
..+..+ ..+..++|+|||++|+++..++
T Consensus 308 -~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 308 -KTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp -EEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred -EEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 122222 3578999999999888877764
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.9e-23 Score=189.09 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=193.0
Q ss_pred EEEcCCCCE-EEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEE-EecCCCCCCCCCCeEEEEeCCCCc
Q 014007 91 ISFNQDHGC-FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILA-LVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 91 ~~~s~~~~~-l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
..|.+++.+ ++++. ++.|++||.++++....... +.... .++|++++.. ++++..+ +.|++||+.+++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~ 73 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFC-----QTLVQIETQLEP 73 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTT-----CEEEEEECSSSS
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCC-----CeEEEEECCCCc
Confidence 356666665 44555 45599999988876643332 34445 8999999874 4444446 899999999998
Q ss_pred e-eEEee-cCCceEEEEEecCccEEEe---C-C--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 168 C-IGELS-FRSEVRSVKLRRDRIIVVL---E-Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 168 ~-~~~~~-~~~~v~~~~~~~~~~~~~~---d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
. ...+. +..+..+++|+|++.+++. + + .|.+||+.+++.+..+.... ....++|+|+++.++++. ..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~--~~~~ 150 (331)
T 3u4y_A 74 PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILID--RSSA 150 (331)
T ss_dssp CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEE--ETTT
T ss_pred eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEe--cCCC
Confidence 7 66676 4444444999999998774 2 3 89999999999888776543 447899999998876554 2457
Q ss_pred c-EEEEEccCCc-e----eeeeccCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCCCce---EEEEEeCCCcCceEEE
Q 014007 240 Q-VRVEHYASKR-T----KFIMAHDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLDGTL---LQEVRRGADRAEIYSL 309 (432)
Q Consensus 240 ~-i~i~d~~~~~-~----~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~~~~---~~~~~~~~~~~~i~~~ 309 (432)
. |.+|+++... + .........+..++|+|+|++|++ +..++. |++||+.+++. +..+.. ...+..+
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~---~~~~~~~ 226 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGT---NNLPGTI 226 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEEC---SSCCCCE
T ss_pred ceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccC---CCCCceE
Confidence 7 9999987522 1 122244566899999999996655 456788 99999999998 777773 3667899
Q ss_pred EECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec----C---C
Q 014007 310 AFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV----E---G 381 (432)
Q Consensus 310 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~ 381 (432)
+|+|||++|+++. .++.|.+||+.+++... +..+..+ . .
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTLSF---------------------------------VKSFGHGLLIDPRPLF 273 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEEEE---------------------------------EEEEECCCCCCCGGGT
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCceee---------------------------------ecccccccccCCCCcc
Confidence 9999999877665 57889999998876210 0011111 1 1
Q ss_pred CceEEEEccCCCEEEEEec-CCeEEEEEecC
Q 014007 382 SPYIVAFGHQKNTVVILGM-DGSFYRCQFDP 411 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~ 411 (432)
....++|+|||++|++++. ++.|.+|+++.
T Consensus 274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 274 GANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp TCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred cccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 2356899999999876665 66999999865
No 132
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.94 E-value=1e-24 Score=198.28 Aligned_cols=202 Identities=12% Similarity=0.142 Sum_probs=168.2
Q ss_pred CcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee-cCCceEEEEEec--CccEEEe---CCeE
Q 014007 127 GGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS-FRSEVRSVKLRR--DRIIVVL---EQKI 196 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~-~~~~v~~~~~~~--~~~~~~~---d~~i 196 (432)
+|...|.+++|++++..+++++.| |.|++||+.++ +.+..+. |...|.+++|+| ++.++++ |+.|
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccccceeEEEEcCCCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 799999999999999999999999 99999999876 3556666 899999999999 5777773 8999
Q ss_pred EEEEcCCC---------eeeEEEeeccCCcceEEEecC--CCcEEEEeecCCCCcEEEEEccCCce-eee----------
Q 014007 197 FVYNFADL---------KLLHQIETIANPKGLCAVSQG--VGSLVLVCPGLQKGQVRVEHYASKRT-KFI---------- 254 (432)
Q Consensus 197 ~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~---------- 254 (432)
++||++++ +.+..+..|...+..++|+|+ +..++ + ++.|+.|++||++.... ..+
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA--C-LGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE--E-EETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE--E-ecCCCcEEEecCCChHHhccccccccccccc
Confidence 99999886 567788889999999999999 66443 3 34899999999987432 111
Q ss_pred ---eccCCceeEEEEcCC---CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCC----CEEEEEeCC
Q 014007 255 ---MAHDSRIACFALTQD---GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNA----QWLAVSSDK 324 (432)
Q Consensus 255 ---~~~~~~i~~~~~sp~---~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~----~~l~~~~~d 324 (432)
..|...+.+++|+|+ +.+|++++.++. +.+|+...++.........|...|.+++|+|++ ++|++++.|
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d 239 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA-IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD 239 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE-EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCc-EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC
Confidence 257889999999997 999999999999 988888777763333333477899999999998 899999999
Q ss_pred CeEEEEEecCCCC
Q 014007 325 GTVHVFNLKVNSG 337 (432)
Q Consensus 325 g~i~iwd~~~~~~ 337 (432)
|.|++||++++..
T Consensus 240 g~i~iwd~~~~~~ 252 (351)
T 3f3f_A 240 GRIRIFKITEKLS 252 (351)
T ss_dssp SCEEEEEEEECC-
T ss_pred CeEEEEeCCCCcC
Confidence 9999999998753
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.94 E-value=3.4e-23 Score=188.11 Aligned_cols=273 Identities=10% Similarity=0.095 Sum_probs=188.1
Q ss_pred EEEEc-CCcEEEEEcCC-CeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CCCCCCCCeEEEEeCC--CCc--eeEEe
Q 014007 100 FAAGT-DHGFRIYNCDP-FREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDDH--QSR--CIGEL 172 (432)
Q Consensus 100 l~~~~-~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~v~iwd~~--~~~--~~~~~ 172 (432)
++++. ++.|++|+++. +.......+. +...+..++|++++..+++++ .+ +.|.+|++. +++ .+..+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~ 80 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAES 80 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEE
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeecccc
Confidence 34434 66699999963 3333333343 566778899999987555544 34 899999987 554 34455
Q ss_pred ecCCceEEEEEecCccEEE-e---CCeEEEEEcC---CCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007 173 SFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA---DLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (432)
Q Consensus 173 ~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d 245 (432)
.....+..++|+|++.+++ . ++.|.+||+. ..+.+..+.. ...+..++|+|+++.++++. ..++.|.+||
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d 157 (343)
T 1ri6_A 81 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPA--LKQDRICLFT 157 (343)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEE--GGGTEEEEEE
T ss_pred ccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEec--CCCCEEEEEE
Confidence 5455889999999998765 2 6789999994 3344444443 33577899999998776543 3579999999
Q ss_pred ccC-Ccee-----eeec-cCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCC--Cce--EEEEEeCC----CcCceEEE
Q 014007 246 YAS-KRTK-----FIMA-HDSRIACFALTQDGQLLATS-STKGTLVRIFNTLD--GTL--LQEVRRGA----DRAEIYSL 309 (432)
Q Consensus 246 ~~~-~~~~-----~~~~-~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~--~~~--~~~~~~~~----~~~~i~~~ 309 (432)
+.. +.+. .+.. ....+.+++|+|+|++|+++ ..++. |++||+.. ++. ...+.... ....+..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 236 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI 236 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence 987 5443 2222 34578899999999977555 47888 99999953 443 33333111 12357789
Q ss_pred EECCCCCEEEEE-eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE
Q 014007 310 AFSSNAQWLAVS-SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF 388 (432)
Q Consensus 310 ~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 388 (432)
+|+|+|++|+++ ..++.|++||+...... ...+..+..+.. +..++|
T Consensus 237 ~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~-------------------------------~~~~~~~~~~~~-~~~~~~ 284 (343)
T 1ri6_A 237 HITPDGRHLYACDRTASLITVFSVSEDGSV-------------------------------LSKEGFQPTETQ-PRGFNV 284 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSCC-------------------------------EEEEEEEECSSS-CCCEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEcCCCCc-------------------------------eEEeeeecCCCc-cceEEE
Confidence 999999988754 47999999999842100 001223333433 889999
Q ss_pred ccCCCEEEEEe-cCCeEEEEEecCCCCC
Q 014007 389 GHQKNTVVILG-MDGSFYRCQFDPVNGG 415 (432)
Q Consensus 389 s~~~~~l~~~~-~dg~v~iw~~~~~~~~ 415 (432)
+|+|++|++++ .++.|.+|+++..+|+
T Consensus 285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~ 312 (343)
T 1ri6_A 285 DHSGKYLIAAGQKSHHISVYEIVGEQGL 312 (343)
T ss_dssp CTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCce
Confidence 99999988888 5899999999887653
No 134
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.93 E-value=7.4e-24 Score=192.00 Aligned_cols=269 Identities=11% Similarity=0.029 Sum_probs=195.9
Q ss_pred CEEEEEc-CCcEEEEEcCCCeeEEEeecccCcce-eEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007 98 GCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-GVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (432)
Q Consensus 98 ~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~ 174 (432)
++|+++. ++.|++||+.+++......+ ++.. .+..++|++++. +++++..+ +.|.+||+.+++.+..+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI--ADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC--TTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEEC
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc--CCCCCCccceEEcCCCCEEEEEeCCC-----CeEEEEECCCCCeEeeEEc
Confidence 3566666 55699999988876533332 2221 467788999984 45666666 8999999999998887774
Q ss_pred CC------ceEEEEEecCccEEE-e--------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEe
Q 014007 175 RS------EVRSVKLRRDRIIVV-L--------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 175 ~~------~v~~~~~~~~~~~~~-~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (432)
.. .+.+++|+|++.+++ . ++.|.+||+.+++.+..+.. ...+..++|+|+++.++++
T Consensus 75 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 75 STPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp CBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE-
T ss_pred CCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe-
Confidence 33 678999999997665 3 38999999999888877765 4456788999999877654
Q ss_pred ecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCEEEEEcCCC------------------------ceEEEEEC
Q 014007 234 PGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQLLATSSTKG------------------------TLVRIFNT 288 (432)
Q Consensus 234 ~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~dg------------------------~~i~vwd~ 288 (432)
++.|.+||+.++.... +..+. ....+.|+|+|++|+..+..+ . |.+||+
T Consensus 153 ----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~d~ 226 (337)
T 1pby_B 153 ----GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDL 226 (337)
T ss_dssp ----SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEET
T ss_pred ----CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc-eEEEeC
Confidence 4789999998865543 33222 112337899998776555433 3 689999
Q ss_pred CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007 289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368 (432)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (432)
.+++.. .+....+...+.+++|+|||++|+++ ++.|++||+.+++.
T Consensus 227 ~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~------------------------------- 272 (337)
T 1pby_B 227 ETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNAS------------------------------- 272 (337)
T ss_dssp TTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEE-------------------------------
T ss_pred CCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcC-------------------------------
Confidence 999876 44333355678899999999999888 79999999988752
Q ss_pred cceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEeee
Q 014007 369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLEY 422 (432)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~ 422 (432)
+..+.. ...+.+++|+|||++|++++.++.|++|++ .+++.+..++.
T Consensus 273 ----~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~--~~~~~~~~~~~ 319 (337)
T 1pby_B 273 ----IKRVPL-PHSYYSVNVSTDGSTVWLGGALGDLAAYDA--ETLEKKGQVDL 319 (337)
T ss_dssp ----EEEEEC-SSCCCEEEECTTSCEEEEESBSSEEEEEET--TTCCEEEEEEC
T ss_pred ----cceecC-CCceeeEEECCCCCEEEEEcCCCcEEEEEC--cCCcEEEEEEc
Confidence 112222 245789999999999999999999999876 44555555443
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=5.1e-25 Score=220.75 Aligned_cols=287 Identities=10% Similarity=0.014 Sum_probs=199.9
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce---eEEEEeeeCCeEEEecCCCCCCC----CCCeEE
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGPDPQY----PLNKVM 159 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~s~~~d~~~----~~~~v~ 159 (432)
.+.+++|+|||++++++.++.|++||+.+++.. ..+. ++.. .+..++|+|++..++++..+..- ..+.|+
T Consensus 18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~--~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTST--VLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCCCcEEEEeCCCCEEEEECCCCcEE--EEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 467789999999887755667999999887765 3333 3333 48899999999988877543110 127899
Q ss_pred EEeCCCCceeEEee----cCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCc----------------
Q 014007 160 IWDDHQSRCIGELS----FRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPK---------------- 217 (432)
Q Consensus 160 iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~---------------- 217 (432)
+||+.+++. ..+. +...+..++|+|||+.++ .++.|++||+.+++..+....+...+
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 999998876 3333 334488999999998887 48899999999887765554433333
Q ss_pred --ceEEEecCCCcEEEEeecC-------------------------------CCCcEEEEEccCCce-eeeecc------
Q 014007 218 --GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRT-KFIMAH------ 257 (432)
Q Consensus 218 --~~~~~~~~~~~~~~~~~g~-------------------------------~d~~i~i~d~~~~~~-~~~~~~------ 257 (432)
..++|+|||+.++++.... .+..|++||+.++.. ..+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 6799999999877654221 012799999988663 555443
Q ss_pred CCceeEEEEcCCCCEEEEEcCC----CceEEEEECCCCceEEEEEeCCCcCce----EEEEECCCCCEEEEE--eCCC--
Q 014007 258 DSRIACFALTQDGQLLATSSTK----GTLVRIFNTLDGTLLQEVRRGADRAEI----YSLAFSSNAQWLAVS--SDKG-- 325 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d----g~~i~vwd~~~~~~~~~~~~~~~~~~i----~~~~~s~~~~~l~~~--~~dg-- 325 (432)
...+..++|+|||++|++.... .. |++||+.++++...+..+ +...+ ..++|+|||+.|+.. ..++
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 331 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSI-LTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR 331 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEE-EEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEE-EEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence 6779999999999988776533 46 999999999887766543 22333 378999999977754 4666
Q ss_pred ----eEEEEEe-cCCCC--CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCce-EEEEccCCCEEEE
Q 014007 326 ----TVHVFNL-KVNSG--SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPY-IVAFGHQKNTVVI 397 (432)
Q Consensus 326 ----~i~iwd~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~ 397 (432)
.|++||+ .+++. .... ..+...+. .++|+|||+.|+.
T Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~l-----------------------------------~~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 332 GKFYHITVSSSQPNSSNDNIQSI-----------------------------------TSGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp SCEEEEEEECSSCCSSSCCCCBS-----------------------------------CCSSSCEEEEEEEETTTTEEEE
T ss_pred cceeEEEEEeccCCCCccceeEe-----------------------------------ecCCeEEEeeeEEcCCCCEEEE
Confidence 4666663 33320 1110 11111233 3799999999987
Q ss_pred EecC---CeEEEEEecCCCC
Q 014007 398 LGMD---GSFYRCQFDPVNG 414 (432)
Q Consensus 398 ~~~d---g~v~iw~~~~~~~ 414 (432)
.+.+ +.++||.++...+
T Consensus 377 ~~~~~~~~~~~l~~~~~~~~ 396 (723)
T 1xfd_A 377 LSTEDLPRRRQLYSANTVGN 396 (723)
T ss_dssp EESSSCTTCCEEEEECSSTT
T ss_pred EEcCCCCcceEEEEEeCCCC
Confidence 6665 8899999987543
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.93 E-value=1.9e-22 Score=183.81 Aligned_cols=270 Identities=11% Similarity=0.065 Sum_probs=182.7
Q ss_pred CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCC--CCCCCCCCeEEEEeCCCCc--eeEEee-cCCc
Q 014007 105 DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGG--PDPQYPLNKVMIWDDHQSR--CIGELS-FRSE 177 (432)
Q Consensus 105 ~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~--~d~~~~~~~v~iwd~~~~~--~~~~~~-~~~~ 177 (432)
+++|.+|.++. ++....... .+......++|++++.+++++. .+ +.|++||+.+++ .+..+. +...
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~--~~~~~p~~~a~spdg~l~~~~~~~~~-----~~v~~~~~~~g~~~~~~~~~~~~~~ 87 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLL--AATQNPTYLALSAKDCLYSVDKEDDE-----GGIAAWQIDGQTAHKLNTVVAPGTP 87 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEE--EECSCCCCEEECTTCEEEEEEEETTE-----EEEEEEEEETTEEEEEEEEEEESCC
T ss_pred CCCEEEEEEcCCCCeEEEeeee--eccCCcceEEEccCCeEEEEEecCCC-----ceEEEEEecCCcEEEeeeeecCCCC
Confidence 34588887754 443322223 2445667789999998444443 25 899999997765 344433 6778
Q ss_pred eEEEEEecCccEEEe----CCeEEEEEcCC-C--eeeEEEeecc---------CCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 178 VRSVKLRRDRIIVVL----EQKIFVYNFAD-L--KLLHQIETIA---------NPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 178 v~~~~~~~~~~~~~~----d~~i~i~d~~~-~--~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+..++|+|++++++. ++.|.+|++.. + +.+..+.... ..+..++|+|+++ ++++ +..++.|
T Consensus 88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~--~~~~~~v 164 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI--DLGSDKV 164 (347)
T ss_dssp CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE--ETTTTEE
T ss_pred CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE--eCCCCEE
Confidence 899999999987662 68999999963 3 2333332211 1255799999998 5443 3467899
Q ss_pred EEEEcc-CCceeee---ec-cCCceeEEEEcCCCCEEEE-EcCCCceEEEEECCC--Cce--EEEEEeCCC----cCceE
Q 014007 242 RVEHYA-SKRTKFI---MA-HDSRIACFALTQDGQLLAT-SSTKGTLVRIFNTLD--GTL--LQEVRRGAD----RAEIY 307 (432)
Q Consensus 242 ~i~d~~-~~~~~~~---~~-~~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~~--~~~--~~~~~~~~~----~~~i~ 307 (432)
.+|++. .+.+... .. ....+..++|+|||++|++ +..++. |++|++.. ++. +..+..... ...+.
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQ-IASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence 999998 4443322 22 2336788999999996666 456777 99999874 543 223332111 13588
Q ss_pred EEEECCCCCEEE-EEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE
Q 014007 308 SLAFSSNAQWLA-VSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV 386 (432)
Q Consensus 308 ~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 386 (432)
.++|+|||++|+ +...++.|.+|++...... ..+..+..+...+..+
T Consensus 244 ~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~--------------------------------~~~~~~~~~~~~~~~~ 291 (347)
T 3hfq_A 244 AIRLSHDGHFLYVSNRGYNTLAVFAVTADGHL--------------------------------TLIQQISTEGDFPRDF 291 (347)
T ss_dssp EEEECTTSCEEEEEEETTTEEEEEEECGGGCE--------------------------------EEEEEEECSSSCCCEE
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEECCCCcE--------------------------------EEeEEEecCCCCcCeE
Confidence 999999999875 4556899999999742110 0133445555668899
Q ss_pred EEccCCCEEEEEecC-CeEEEEEecCCCCCcc
Q 014007 387 AFGHQKNTVVILGMD-GSFYRCQFDPVNGGEM 417 (432)
Q Consensus 387 ~~s~~~~~l~~~~~d-g~v~iw~~~~~~~~~~ 417 (432)
+|+|||++|++++.+ +.|.+|+++..+|+..
T Consensus 292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 999999999888765 8999999998777543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=7.2e-24 Score=211.84 Aligned_cols=282 Identities=11% Similarity=0.075 Sum_probs=195.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCee--EEEeecccC-------------cceeEEEEeeeCCeEEEecCCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFRE--IFRRDFERG-------------GGIGVVEMLFRCNILALVGGGPDP 151 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~--~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~s~~~d~ 151 (432)
.+..+.|. |..++++.+++| +||+.+++. ......... +...+..++|++++.++++.+
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~~~--- 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLFTQ--- 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEEET---
T ss_pred cCCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEEEC---
Confidence 45557888 555565555559 999988765 322211100 014689999999965555543
Q ss_pred CCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCC-----CeeeEEEeeccCC--------
Q 014007 152 QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-----LKLLHQIETIANP-------- 216 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-----~~~~~~~~~~~~~-------- 216 (432)
+.|++||+.+++......+...+.+++|+|||+.++ .++.|++||+.+ ++...........
T Consensus 101 ----~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 176 (706)
T 2z3z_A 101 ----GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVH 176 (706)
T ss_dssp ----TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCG
T ss_pred ----CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchh
Confidence 899999999887766666778899999999998887 489999999988 7665443333222
Q ss_pred ------cceEEEecCCCcEEEEee------------------------------cCCCCcEEEEEccCCceeeee---cc
Q 014007 217 ------KGLCAVSQGVGSLVLVCP------------------------------GLQKGQVRVEHYASKRTKFIM---AH 257 (432)
Q Consensus 217 ------~~~~~~~~~~~~~~~~~~------------------------------g~~d~~i~i~d~~~~~~~~~~---~~ 257 (432)
+..+.|+|||+.++++.. ...+..|.+||+.++....+. .|
T Consensus 177 ~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 177 QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 478999999998776541 113467999999887655443 56
Q ss_pred CCceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcC---ceEEEEECC--CCCEEEEEeCCCeE
Q 014007 258 DSRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSS--NAQWLAVSSDKGTV 327 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~---~i~~~~~s~--~~~~l~~~~~dg~i 327 (432)
...+.+++|+|||++|++++.++ . |++||+.+++....+....+.. .+..++|+| ||++|++++.||.+
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~-v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECK-VNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEE-EEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeE-EEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 77899999999999999987775 7 9999999984444443211222 246789999 99999999999999
Q ss_pred EEEEec-CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE-EEEccCCCEEEEEecC-C--
Q 014007 328 HVFNLK-VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI-VAFGHQKNTVVILGMD-G-- 402 (432)
Q Consensus 328 ~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d-g-- 402 (432)
+||++. +++. +..+..+...+.. ++|+|||+.|+.++.+ +
T Consensus 336 ~l~~~~~~~~~-----------------------------------~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 336 HLYLYDTTGRL-----------------------------------IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPL 380 (706)
T ss_dssp EEEEEETTSCE-----------------------------------EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTT
T ss_pred EEEEEECCCCE-----------------------------------EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCc
Confidence 999987 3321 2233345555665 7999999988766654 3
Q ss_pred eEEEEEecCCCC
Q 014007 403 SFYRCQFDPVNG 414 (432)
Q Consensus 403 ~v~iw~~~~~~~ 414 (432)
.+.||.++...+
T Consensus 381 ~~~l~~~d~~~~ 392 (706)
T 2z3z_A 381 ERHFYCIDIKGG 392 (706)
T ss_dssp CBEEEEEETTCC
T ss_pred eEEEEEEEcCCC
Confidence 366676766544
No 138
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=3.2e-24 Score=198.86 Aligned_cols=225 Identities=13% Similarity=0.051 Sum_probs=146.9
Q ss_pred ccCCCCCCCeEEEEEcC--------CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCe-EEEecCC
Q 014007 79 STSSSPPPTLLHISFNQ--------DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNI-LALVGGG 148 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~--------~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~ 148 (432)
..+.+|.+.|++++|+| |+++||+|+ |++|+|||+.+..... ..+ .|...+.+++|+|++ ..+++++
T Consensus 130 ~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~-~~~--~~~~~v~~v~~~p~~~~~l~~~~ 206 (393)
T 4gq1_A 130 GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL-AGY--PLSSPGISVQFRPSNPNQLIVGE 206 (393)
T ss_dssp CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE-EEE--ECSSCEEEEEEETTEEEEEEEEE
T ss_pred cccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee-eec--CCCCCcEEEEECCCCCceEEecC
Confidence 35788999999999998 889999998 5559999998776552 223 477889999999987 4799999
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEee-cCCceE--EEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEe-c
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVR--SVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVS-Q 224 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~ 224 (432)
.| ++|++||+.+++...... +..... .+.+.... .........+...+..+.|. +
T Consensus 207 ~d-----~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~----------------~~~~~~~~~~~~~v~~v~~~~~ 265 (393)
T 4gq1_A 207 RN-----GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP----------------LVNTCHSSGIASSLANVRWIGS 265 (393)
T ss_dssp TT-----SEEEEEETTCCC----------CSCCCSEEEESGG----------------GC------CCSSSCSEEEEETT
T ss_pred CC-----CEEEEEECCCCcccccccccCCcccceEEeccccc----------------ceeeeecccccccceeeeeecC
Confidence 99 999999999887665544 221111 11111111 01111223566778888887 6
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCCc-eeeeeccCCceeEE------------------EEcC--CCCEEEEEcCCCceE
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMAHDSRIACF------------------ALTQ--DGQLLATSSTKGTLV 283 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~------------------~~sp--~~~~l~~~~~dg~~i 283 (432)
++..++ +++.|+.+++||+.... ...+..|...+..+ .|+| ++.++++|+.|+. |
T Consensus 266 dg~~l~---s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~-V 341 (393)
T 4gq1_A 266 DGSGIL---AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL-I 341 (393)
T ss_dssp TTCEEE---EECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE-E
T ss_pred CCCEEE---EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE-E
Confidence 776543 23589999999997633 22233333333222 3333 4456778899999 9
Q ss_pred EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
++||+.+++++..+.. |..+|.+++|+|||++||+++++| +.+|.+..
T Consensus 342 ~lwd~~~~~~~~~~~~--~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 342 QLINTYEKDSNSIPIQ--LGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EEEETTCTTCCEEEEE--CSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred EEEECCCCcEEEEecC--CCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 9999999998887775 457999999999999999998665 77777654
No 139
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=8.1e-24 Score=187.82 Aligned_cols=248 Identities=9% Similarity=-0.000 Sum_probs=187.5
Q ss_pred CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEee-c-CCceEEE
Q 014007 105 DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELS-F-RSEVRSV 181 (432)
Q Consensus 105 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~-~-~~~v~~~ 181 (432)
++.|++||+.+++.. ... .+...+.++.|+|++..++++. + +.|++||+.+ ++...... + ...+.++
T Consensus 21 ~~~i~~~d~~~~~~~--~~~--~~~~~v~~~~~spdg~~l~~~~-~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 90 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR--VVW--QTPELFEAPNWSPDGKYLLLNS-E-----GLLYRLSLAGDPSPEKVDTGFATICNNDH 90 (297)
T ss_dssp CEEEEEEETTTTEEE--EEE--EESSCCEEEEECTTSSEEEEEE-T-----TEEEEEESSSCCSCEECCCTTCCCBCSCC
T ss_pred ceeEEEEeCCCCcee--eec--cCCcceEeeEECCCCCEEEEEc-C-----CeEEEEeCCCCCCceEeccccccccccce
Confidence 344999999887655 223 3677899999999999888876 4 8999999998 87766665 3 4788999
Q ss_pred EEecCccEEEe-----CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc--CCcee
Q 014007 182 KLRRDRIIVVL-----EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA--SKRTK 252 (432)
Q Consensus 182 ~~~~~~~~~~~-----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~ 252 (432)
+|+|++.+++. ++ .|..+++.+++ ...+..+ ..+..++|+|+++.++++. ..++.+.+|+++ ++...
T Consensus 91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCG--IRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEE--EETTEEEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEE--CCCCceEEEEEECCCCcce
Confidence 99999998873 13 45555555544 3344333 3477789999998776543 367888898864 46666
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC------
Q 014007 253 FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK------ 324 (432)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------ 324 (432)
.+..+...+.+++|+|+|++|++++ .++. +++|++. .+..+..+.. +...+..++|+|+|++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred EcccCCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 7778888999999999999887766 5888 9999886 4555556553 45678999999999999988765
Q ss_pred -----CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe
Q 014007 325 -----GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG 399 (432)
Q Consensus 325 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 399 (432)
+.|++||+.+++.. .+..+..|.+.+..++|+|++++|++++
T Consensus 244 ~~~~~~~l~~~d~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~spdg~~l~~~~ 290 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNVE---------------------------------TLFDLFGGQGTMNSPNWSPDGDEFAYVR 290 (297)
T ss_dssp CSSEEEEEEEEETTSCSCE---------------------------------EEEEEEESTTTSCSCCBCTTSSEEEEEE
T ss_pred cccCceEEEEEecCCCCce---------------------------------eeeccCCCCcccccceECCCCCEEEEEE
Confidence 56999999876521 1334557788899999999999999887
Q ss_pred cCC
Q 014007 400 MDG 402 (432)
Q Consensus 400 ~dg 402 (432)
.+.
T Consensus 291 ~~~ 293 (297)
T 2ojh_A 291 YFP 293 (297)
T ss_dssp ECC
T ss_pred ecc
Confidence 763
No 140
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.92 E-value=2.2e-23 Score=203.47 Aligned_cols=270 Identities=9% Similarity=-0.009 Sum_probs=193.6
Q ss_pred CCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC---CCCCCCCeEE
Q 014007 85 PPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVM 159 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~~~~~~v~ 159 (432)
..+|++++|+|||+.||+++ ++.++||++++++.. .+..++...+..+.|+|+ ..+++++. + ....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~---~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~-----~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV---KLNREPINSVLDPHYGVG-RVILVRDVSKGA-----EQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE---ECCSSCCSEECEECTTCS-EEEEEEECSTTS-----CCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE---eeecccccccccccCCCC-eEEEEeccCCCC-----cceE
Confidence 45799999999999999876 455999998766543 333234468889999999 55554432 3 4445
Q ss_pred EEeCCC---CceeEEeecCCceEEEEEecCccE--EEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEE
Q 014007 160 IWDDHQ---SRCIGELSFRSEVRSVKLRRDRII--VVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 160 iwd~~~---~~~~~~~~~~~~v~~~~~~~~~~~--~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (432)
+|.+.. +... .+.....+...+|+|++.. +++ ++.+.+||+.+++........ . ..++|+|||+.++.+
T Consensus 92 l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEE
T ss_pred EEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEE
Confidence 544332 3322 4443334556788888753 332 556679999988765544332 2 689999999977654
Q ss_pred eecC-CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCC--ceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 233 CPGL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 233 ~~g~-~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg--~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
.... ..+.|++||+.++....+..|...+..++|+|||++|+++..++ . |++||+.+++.. .+.. +...+..+
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~--~~~~~~~~ 243 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLEL--PSKDFSSY 243 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCC--SCSHHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccC--CCcChhhh
Confidence 4211 12679999999988888889999999999999999999888888 7 999999998877 4443 44556666
Q ss_pred E--------ECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC
Q 014007 310 A--------FSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG 381 (432)
Q Consensus 310 ~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (432)
+ |+|||.++++++.++++++|++ ++.. ..+.+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~--------------------------------------~~~~~ 283 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV--------------------------------------EAPQG 283 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE--------------------------------------CCCSS
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee--------------------------------------ccCCC
Confidence 6 9999998999999999999999 4411 02234
Q ss_pred CceEEEEccCCCEEEEEecCCe-EEEEEecCC
Q 014007 382 SPYIVAFGHQKNTVVILGMDGS-FYRCQFDPV 412 (432)
Q Consensus 382 ~v~~~~~s~~~~~l~~~~~dg~-v~iw~~~~~ 412 (432)
.|..++|+ +++++++++.+.. -.+|.++..
T Consensus 284 ~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 284 NHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred ceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 57889999 9999998888754 455555543
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.92 E-value=3.3e-23 Score=207.02 Aligned_cols=276 Identities=10% Similarity=0.032 Sum_probs=198.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
...|.+++|+|| +.++.+.++.|++||+.+++... .. .+...+..+.|+|++..++.. .+ +.|++||+.
T Consensus 81 ~~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~--l~--~~~~~~~~~~~SpdG~~la~~-~~-----~~i~v~~~~ 149 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTY--LF--DTNEETASLDFSPVGDRVAYV-RN-----HNLYIARGG 149 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEE--EE--CCTTCCTTCEECTTSSEEEEE-ET-----TEEEEEECB
T ss_pred ccCceeEEECCC-CeEEEEECCEEEEEECCCCceEE--cc--CCcccccCCcCCCCCCEEEEE-EC-----CeEEEEecC
Confidence 367999999999 77777777779999998876542 22 245567788999999888875 45 899999998
Q ss_pred C-----CceeEEee-cCCc--------------eEEEEEecCccEEEe---C----------------------------
Q 014007 165 Q-----SRCIGELS-FRSE--------------VRSVKLRRDRIIVVL---E---------------------------- 193 (432)
Q Consensus 165 ~-----~~~~~~~~-~~~~--------------v~~~~~~~~~~~~~~---d---------------------------- 193 (432)
+ ++...... +... +.++.|+|||+++++ |
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 8 77665444 2222 589999999998873 1
Q ss_pred -----CeEEEEEcCCCeeeEEEe--eccCCcceEEEecCCCcEEEEeecC--CCCcEEEEEccCC-ceeeee--ccCC--
Q 014007 194 -----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCPGL--QKGQVRVEHYASK-RTKFIM--AHDS-- 259 (432)
Q Consensus 194 -----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~-~~~~~~--~~~~-- 259 (432)
..|++||+.+++...... .+...+..++|+|+|+.++++.... ....|.+||+.++ ....+. .+..
T Consensus 230 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~ 309 (706)
T 2z3z_A 230 TPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV 309 (706)
T ss_dssp SCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred CCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence 469999999887644332 2345577899999999776654211 1248999999887 554443 2222
Q ss_pred -ceeEEEEcC--CCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEE-EEECCCCCEEEEEeC-CC----eEEE
Q 014007 260 -RIACFALTQ--DGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSD-KG----TVHV 329 (432)
Q Consensus 260 -~i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~-dg----~i~i 329 (432)
.+.+++|+| +|++|++++.++. ++||++. +++.+..+.. +...+.. ++|+|+|+.|+.++. ++ .|+.
T Consensus 310 ~~~~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 310 EPLHPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp CCCSCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred CccCCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 246789999 9999999999998 9999876 6677776654 4456776 799999998876654 43 5666
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC----CeEE
Q 014007 330 FNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD----GSFY 405 (432)
Q Consensus 330 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~ 405 (432)
||+.+++. ..+ .+...+..++|+|||++|+.++.+ +.|+
T Consensus 387 ~d~~~~~~------------------------------------~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 387 IDIKGGKT------------------------------------KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp EETTCCCC------------------------------------EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred EEcCCCCc------------------------------------eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence 66665441 011 144568899999999998876554 5699
Q ss_pred EEEecC
Q 014007 406 RCQFDP 411 (432)
Q Consensus 406 iw~~~~ 411 (432)
+|+++.
T Consensus 430 l~d~~~ 435 (706)
T 2z3z_A 430 VTNIGK 435 (706)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 988743
No 142
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.92 E-value=4e-23 Score=191.24 Aligned_cols=290 Identities=12% Similarity=-0.004 Sum_probs=198.7
Q ss_pred cccCCCCCCCeEE-----EEEcCCCCEEEEEcC-Cc---EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC
Q 014007 78 ESTSSSPPPTLLH-----ISFNQDHGCFAAGTD-HG---FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG 148 (432)
Q Consensus 78 ~~~~~~~~~~v~~-----~~~s~~~~~l~~~~~-~~---i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~ 148 (432)
...+..|...... .+|+|||++|+.+++ ++ |.+|++++++.. .... ++...+....|+|++..|+...
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~--~lt~-~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT--QLTE-GRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE--ECCC-SSCBCSSSCEECTTSSEEEEEE
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE--Eeee-CCCCCccceEEcCCCCEEEEEe
Confidence 3444555555555 789999999888874 44 888888877654 2222 3444444677999998888887
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEE--EecCccEEEe-------------------------CCeEEEEE
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVK--LRRDRIIVVL-------------------------EQKIFVYN 200 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~--~~~~~~~~~~-------------------------d~~i~i~d 200 (432)
.+ +.|++||+.+++....+. +...+.... +++++.+++. +..|++||
T Consensus 100 ~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 100 DG-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp TT-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred CC-----CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 77 899999999998777666 444443333 4889888761 25799999
Q ss_pred cCCCeeeEEEeeccCCcceEEEec-CCCcEEEEeecCC---CCcEEEEEccCCceeeeeccC--CceeEEEEcCCCCEEE
Q 014007 201 FADLKLLHQIETIANPKGLCAVSQ-GVGSLVLVCPGLQ---KGQVRVEHYASKRTKFIMAHD--SRIACFALTQDGQLLA 274 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~ 274 (432)
+.+++.. .+..+...+..+.|+| +++.++++..+.. ...|.++|..++....+..+. ..+..++|+|||+.|+
T Consensus 175 ~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~ 253 (388)
T 3pe7_A 175 LKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALV 253 (388)
T ss_dssp TTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEE
T ss_pred CCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEE
Confidence 9988654 3444556678899999 9987766653211 447888888877766666555 3578899999999876
Q ss_pred EEcC-C----CceEEEEECCCCceEEEEEeCCCcC---ceEEEEECCCCCEEEEE---------eCCCeEEEEEecCCCC
Q 014007 275 TSST-K----GTLVRIFNTLDGTLLQEVRRGADRA---EIYSLAFSSNAQWLAVS---------SDKGTVHVFNLKVNSG 337 (432)
Q Consensus 275 ~~~~-d----g~~i~vwd~~~~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~---------~~dg~i~iwd~~~~~~ 337 (432)
..+. + .. |++||+.+++.........+.. ....+.|+|||+.|+.. ..+..|++||+.+++
T Consensus 254 ~~~~~~~~~~~~-l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~- 331 (388)
T 3pe7_A 254 YVSYLKGSPDRF-IYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT- 331 (388)
T ss_dssp EEEEETTCCCEE-EEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE-
T ss_pred EEecCCCCCcce-EEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc-
Confidence 6443 2 24 9999999987543333211000 01123799999988754 456689999998865
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC-----------CceEEEEccCCCEEEEEe-cCCeEE
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-----------SPYIVAFGHQKNTVVILG-MDGSFY 405 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~-~dg~v~ 405 (432)
...+..+.. .+..++|+|||+.|+.++ .+|...
T Consensus 332 -----------------------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~ 376 (388)
T 3pe7_A 332 -----------------------------------QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPA 376 (388)
T ss_dssp -----------------------------------EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCE
T ss_pred -----------------------------------eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCcee
Confidence 223444444 578899999999888665 478888
Q ss_pred EEEecCCC
Q 014007 406 RCQFDPVN 413 (432)
Q Consensus 406 iw~~~~~~ 413 (432)
||.++...
T Consensus 377 l~~~~l~~ 384 (388)
T 3pe7_A 377 LYLATLPE 384 (388)
T ss_dssp EEEEECCG
T ss_pred EEEEECCh
Confidence 88887653
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.4e-22 Score=210.53 Aligned_cols=282 Identities=10% Similarity=0.029 Sum_probs=209.2
Q ss_pred cccCCCCCCCe-------EEEEEcCCCCEEEEEcCC-------cEEEEEcCCCeeEEE----------------------
Q 014007 78 ESTSSSPPPTL-------LHISFNQDHGCFAAGTDH-------GFRIYNCDPFREIFR---------------------- 121 (432)
Q Consensus 78 ~~~~~~~~~~v-------~~~~~s~~~~~l~~~~~~-------~i~iw~~~~~~~~~~---------------------- 121 (432)
...+..|...+ .+++|+|||+++++++.+ .|.+|++.++.....
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~ 171 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF 171 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence 34566788777 999999999977776632 277777765443210
Q ss_pred -------------------------eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC-CceeEEeecC
Q 014007 122 -------------------------RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-SRCIGELSFR 175 (432)
Q Consensus 122 -------------------------~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~~~~~~~~~ 175 (432)
..+ .+|...+..+.|+++ ..+++++.+ +.+.+|.+.. +.....+.+.
T Consensus 172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l-~~~~~~v~~~~~s~d-~l~~~~~~d-----g~~~l~~~~~~g~~~~~l~~~ 244 (1045)
T 1k32_A 172 ELPHWKGYRGGTRGKIWIEVNSGAFKKI-VDMSTHVSSPVIVGH-RIYFITDID-----GFGQIYSTDLDGKDLRKHTSF 244 (1045)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEE-ECCSSCCEEEEEETT-EEEEEECTT-----SSCEEEEEETTSCSCEECCCC
T ss_pred CccccccccCCCcCCEEEECCCCCeEEC-cCCCCcccceEEeCC-EEEEEEecc-----CceEEEEEeCCCCcceEecCC
Confidence 011 134455667778888 444555566 7888887653 4444555533
Q ss_pred CceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEee-----------ccCCcceEEEe-cCCCcEEEEeecCCCCcE
Q 014007 176 SEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIET-----------IANPKGLCAVS-QGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~g~~d~~i 241 (432)
..+...+|+|||..++ .++.|++||+... .+..+.. +...+..++|+ |+|+.++++. ++.|
T Consensus 245 ~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~----~~~i 319 (1045)
T 1k32_A 245 TDYYPRHLNTDGRRILFSKGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS----RGQA 319 (1045)
T ss_dssp CSSCEEEEEESSSCEEEEETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE----TTEE
T ss_pred CCcceeeEcCCCCEEEEEeCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE----cCEE
Confidence 4567789999998777 4899999998543 3334433 23357899999 9998776543 6899
Q ss_pred EEEEccCCceeeeeccCC-ceeEEEEcCCCCEEEEEcCCCceEE-EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEE
Q 014007 242 RVEHYASKRTKFIMAHDS-RIACFALTQDGQLLATSSTKGTLVR-IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLA 319 (432)
Q Consensus 242 ~i~d~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~dg~~i~-vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 319 (432)
.+|+...+....+..|.. .+..++|+ +|+.|++++.++. |+ +||+.+++... +. .+...+..++|+|||++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~-l~~~~d~~~~~~~~-l~--~~~~~~~~~~~SpDG~~la 394 (1045)
T 1k32_A 320 FIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGD-FLGIYDYRTGKAEK-FE--ENLGNVFAMGVDRNGKFAV 394 (1045)
T ss_dssp EEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEE-EEEEEETTTCCEEE-CC--CCCCSEEEEEECTTSSEEE
T ss_pred EEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCc-eEEEEECCCCCceE-ec--CCccceeeeEECCCCCEEE
Confidence 999999887777777887 89999999 9999999888877 88 99988776543 33 2557899999999999999
Q ss_pred EEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe
Q 014007 320 VSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG 399 (432)
Q Consensus 320 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 399 (432)
+++.++.|++||+.+++. ......|.+.+..++|+|||++|++++
T Consensus 395 ~~~~~~~v~~~d~~tg~~-----------------------------------~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKP-----------------------------------TVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EEETTSEEEEEETTTCCE-----------------------------------EEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred EECCCCeEEEEECCCCce-----------------------------------EEeccCCCCCccceEECCCCCeEEEEe
Confidence 999999999999988762 122346788899999999999999887
Q ss_pred cCC----------eEEEEEecC
Q 014007 400 MDG----------SFYRCQFDP 411 (432)
Q Consensus 400 ~dg----------~v~iw~~~~ 411 (432)
.++ .|++|+++.
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTT
T ss_pred cCccccccCCCCCeEEEEECCC
Confidence 754 899998753
No 144
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=5.6e-23 Score=213.59 Aligned_cols=274 Identities=9% Similarity=0.084 Sum_probs=207.4
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEE
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVM 159 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~ 159 (432)
+..|...+.++.|+++ .+++++. ++.++||.++...... ..+. .+. .+....|++++..++.+. + +.|+
T Consensus 199 l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~-~~l~-~~~-~~~~~~~SpDG~~la~~~-~-----~~i~ 268 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDL-RKHT-SFT-DYYPRHLNTDGRRILFSK-G-----GSIY 268 (1045)
T ss_dssp EECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSC-EECC-CCC-SSCEEEEEESSSCEEEEE-T-----TEEE
T ss_pred CcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcc-eEec-CCC-CcceeeEcCCCCEEEEEe-C-----CEEE
Confidence 3678999999999998 5555665 4458888875322111 2333 222 345568899998777764 5 8999
Q ss_pred EEeCCCCceeEEeec------------CCceEEEEEe-cCccEEE--eCCeEEEEEcCCCeeeEEEeeccC-CcceEEEe
Q 014007 160 IWDDHQSRCIGELSF------------RSEVRSVKLR-RDRIIVV--LEQKIFVYNFADLKLLHQIETIAN-PKGLCAVS 223 (432)
Q Consensus 160 iwd~~~~~~~~~~~~------------~~~v~~~~~~-~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~ 223 (432)
+||+...+ +..+.. ...+.+++|+ |||..++ .++.|++|++..++... +..+.. .+..++|+
T Consensus 269 ~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s 346 (1045)
T 1k32_A 269 IFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD 346 (1045)
T ss_dssp EECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CSCCSCEEEEEECSS
T ss_pred EecCCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-ccCCCcceEEeeeEc
Confidence 99984433 334332 2368999999 9998777 48899999998776543 444555 67788899
Q ss_pred cCCCcEEEEeecCCCCcEE-EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC
Q 014007 224 QGVGSLVLVCPGLQKGQVR-VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD 302 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~-i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~ 302 (432)
+++.+++++ .++.+. +||+.++....+..|...+..++|+|||++|++++.++. |++||+.+++....+.. |
T Consensus 347 -dg~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~ 419 (1045)
T 1k32_A 347 -TKVAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--R 419 (1045)
T ss_dssp -SEEEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--S
T ss_pred -CCCeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--C
Confidence 887665543 367888 889988777776688889999999999999999999999 99999999998877754 5
Q ss_pred cCceEEEEECCCCCEEEEEeCCC----------eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007 303 RAEIYSLAFSSNAQWLAVSSDKG----------TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS 372 (432)
Q Consensus 303 ~~~i~~~~~s~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (432)
...+.+++|||||++|++++.++ .|++||+.+++
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~------------------------------------ 463 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK------------------------------------ 463 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE------------------------------------
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc------------------------------------
Confidence 67889999999999999887644 89999998765
Q ss_pred eEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
...+..|...+..++|+|||++|++++.++...+|+.
T Consensus 464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence 2233445566788999999999999998877777653
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=1.1e-22 Score=204.48 Aligned_cols=273 Identities=9% Similarity=0.013 Sum_probs=198.6
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCC---eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPF---REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
..|.+++|||||++|++++++.|++|++.++ .. ..+. .+...+..+.|+|++..++.+.. +.|++||
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~---~~l~-~~~~~~~~~~~SPDG~~la~~~~------~~i~~~d 178 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAV---RQLT-HGEGFATDAKLSPKGGFVSFIRG------RNLWVID 178 (741)
T ss_dssp EESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSC---CBCC-CSSSCEEEEEECTTSSEEEEEET------TEEEEEE
T ss_pred cCcceeEECCCCCEEEEEeCCcEEEEECCCCCcceE---EEcc-cCCcccccccCCCCCCEEEEEeC------CcEEEEe
Confidence 3488999999999999998877999999876 33 2333 46677899999999998887764 6999999
Q ss_pred CCCCceeEEee-cCCc----------------eEEEEEecCccEEEe---CC----------------------------
Q 014007 163 DHQSRCIGELS-FRSE----------------VRSVKLRRDRIIVVL---EQ---------------------------- 194 (432)
Q Consensus 163 ~~~~~~~~~~~-~~~~----------------v~~~~~~~~~~~~~~---d~---------------------------- 194 (432)
+.+++...... +... +.+++|+|||+.++. |+
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~ 258 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGD 258 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTS
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCC
Confidence 99887665544 2222 478999999998773 44
Q ss_pred -----eEEEEEcCC-CeeeEEEe--eccCCcceEEEecCCCcEEEEee--cCCCCcEEEEEccCCceeeee-ccCC----
Q 014007 195 -----KIFVYNFAD-LKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP--GLQKGQVRVEHYASKRTKFIM-AHDS---- 259 (432)
Q Consensus 195 -----~i~i~d~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--g~~d~~i~i~d~~~~~~~~~~-~~~~---- 259 (432)
.|++||+.+ ++...... .+...+..++| |||+.++++.. +..+..|++||+.++....+. .+..
T Consensus 259 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 337 (741)
T 2ecf_A 259 ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP 337 (741)
T ss_dssp CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC
Confidence 789999988 76544332 24456778999 99998876653 224678999999987655443 3332
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECC-CCceEEEEEeCCCcCceEEE-EECCCCCEEEEE-eCCC--eEEEEEecC
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTLLQEVRRGADRAEIYSL-AFSSNAQWLAVS-SDKG--TVHVFNLKV 334 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~-~~dg--~i~iwd~~~ 334 (432)
.+..++|+|||+++++++.++. ++||.+. +++ ...+.. +...+..+ .|+|+|+.|+.. +.++ .++||++..
T Consensus 338 ~~~~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~--~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTH--GNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CCSCCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCC--SSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred cCCceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeee--cceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 4568999999999999999997 8888765 445 555553 44678787 599999977654 4555 899999975
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC----CeEEEEEe
Q 014007 335 -NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD----GSFYRCQF 409 (432)
Q Consensus 335 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~v~iw~~ 409 (432)
+... ..+.. .+.+..++|+|||++|+....+ +.+++|+.
T Consensus 414 ~g~~~-----------------------------------~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 414 QGGQP-----------------------------------QRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp TCCCC-----------------------------------EECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEET
T ss_pred CCCCe-----------------------------------eeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEc
Confidence 3211 11222 3457789999999998876554 46777765
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.1e-21 Score=178.14 Aligned_cols=238 Identities=11% Similarity=0.072 Sum_probs=170.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC--CcEEEEEcC--CCeeEEEeecccCcceeEEEEeeeCCeEEEe-cCCCCCCCCCCeE
Q 014007 84 PPPTLLHISFNQDHGCFAAGTD--HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALV-GGGPDPQYPLNKV 158 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~--~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~~d~~~~~~~v 158 (432)
|...+.+++|+|+|++|++++. +.|++|+++ +++......+. ....+..++|++++..++ ++..+ +.|
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~-----~~i 108 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNA-----GNV 108 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTT-----TEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc--cCCCCcEEEEcCCCCEEEEEecCC-----CeE
Confidence 5667888999999998887774 459999997 55544334443 223778899999987654 44446 899
Q ss_pred EEEeCC---CCceeEEeecCCceEEEEEecCccEEEe----CCeEEEEEcCC-CeeeE----EEee-ccCCcceEEEecC
Q 014007 159 MIWDDH---QSRCIGELSFRSEVRSVKLRRDRIIVVL----EQKIFVYNFAD-LKLLH----QIET-IANPKGLCAVSQG 225 (432)
Q Consensus 159 ~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~-~~~~~----~~~~-~~~~~~~~~~~~~ 225 (432)
.+||+. ..+.+..+.....+.+++|+|++.+++. ++.|++||+.+ ++... .+.. ....+..++|+|+
T Consensus 109 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd 188 (343)
T 1ri6_A 109 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 188 (343)
T ss_dssp EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred EEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC
Confidence 999994 4445555555667999999999986662 68999999987 54432 2222 2235567999999
Q ss_pred CCcEEEEeecCCCCcEEEEEccC--Ccee---eee----cc--CCceeEEEEcCCCCEEEE-EcCCCceEEEEECC--CC
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIM----AH--DSRIACFALTQDGQLLAT-SSTKGTLVRIFNTL--DG 291 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~--~~~~---~~~----~~--~~~i~~~~~sp~~~~l~~-~~~dg~~i~vwd~~--~~ 291 (432)
++.++++. ..++.|.+|+++. +... .+. .+ ...+..++|+|+|++|++ +..++. |++||+. ++
T Consensus 189 g~~l~~~~--~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~ 265 (343)
T 1ri6_A 189 EQYAYCVN--ELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGS 265 (343)
T ss_dssp SSEEEEEE--TTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSC
T ss_pred CCEEEEEe--CCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCC
Confidence 98766543 4689999999964 3322 121 11 235678999999988874 557888 9999998 33
Q ss_pred --ceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 292 --TLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 292 --~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
+.+..+..+ ..+..++|+|+|++|++++ .++.|.+|+++.
T Consensus 266 ~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 266 VLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp CEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred ceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 444445432 3488999999999988887 689999997763
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.2e-21 Score=177.23 Aligned_cols=242 Identities=10% Similarity=0.067 Sum_probs=173.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC---eE
Q 014007 84 PPPTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN---KV 158 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~---~v 158 (432)
+...+ +++|+|+|++|++++ ++.|.+||..+++.. ...+. .+.....+++|++++..++++..+ + .|
T Consensus 39 ~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~-----~~~~~i 110 (331)
T 3u4y_A 39 GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK-VVAIQ-EGQSSMADVDITPDDQFAVTVTGL-----NHPFNM 110 (331)
T ss_dssp CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-EEEEE-ECSSCCCCEEECTTSSEEEECCCS-----SSSCEE
T ss_pred cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-EEecc-cCCCCccceEECCCCCEEEEecCC-----CCcccE
Confidence 44556 999999999766655 445999999877652 13333 233333338899999877755443 3 89
Q ss_pred EEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCe-EEEEEcCCCeeeE----EEeeccCCcceEEEecCCCcE
Q 014007 159 MIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQK-IFVYNFADLKLLH----QIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~-i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 229 (432)
.+||+.+++.+..+.......+++|+|+|++++ + ++. |.+|++.....+. ...........++|+|+++.+
T Consensus 111 ~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l 190 (331)
T 3u4y_A 111 QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFA 190 (331)
T ss_dssp EEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEE
T ss_pred EEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEE
Confidence 999999999988888777789999999997554 2 467 9999987643321 111223445789999999877
Q ss_pred EEEeecCCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCce--EEEEEeC--C
Q 014007 230 VLVCPGLQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTL--LQEVRRG--A 301 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~--~~~~~~~--~ 301 (432)
+++. ..++.|.+||+.++.. .........+..++|+|+|++|++++ .++. |.+||+.+++. +..+... .
T Consensus 191 ~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 191 FVAN--LIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD-VFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp EEEE--TTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE-EEEEETTTTEEEEEEEEECCCCC
T ss_pred EEEe--CCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE-EEEEECCCCceeeeccccccccc
Confidence 6654 4689999999988654 33333457788999999999776665 4667 99999999887 4444432 1
Q ss_pred CcC---ceEEEEECCCCCEEEEEe-CCCeEEEEEecCCC
Q 014007 302 DRA---EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS 336 (432)
Q Consensus 302 ~~~---~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 336 (432)
+.. ....++|+|||++|++++ .++.|.+||+....
T Consensus 268 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 268 DPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 112 235689999999887665 56799999998754
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=3.9e-21 Score=175.35 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=184.2
Q ss_pred ceeEEEEeeeCCeEEEecCCCCC--CCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcC
Q 014007 129 GIGVVEMLFRCNILALVGGGPDP--QYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFA 202 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~--~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~ 202 (432)
...+..+++++++..++.++.+. ...++.|.+||..+++.+..+.....+..++|++++..++ . ++.|.+||+.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 34567888999875444433210 0001789999999999999888777788999999998554 2 6899999999
Q ss_pred CCeeeEEEeeccCC---------cceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eeccCCceeEEEEcCCCCE
Q 014007 203 DLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHDSRIACFALTQDGQL 272 (432)
Q Consensus 203 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~sp~~~~ 272 (432)
+++.+..+..+... ...++++|+++.++++.. ..++.|.+||..+..... +..+...+.+++|+|+|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI-GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEE-SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEec-CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 99988887654322 467899999998766542 357899999998866544 4336667899999999999
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCC--CcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCC
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGA--DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDP 349 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~ 349 (432)
|++++.++. |.+||+.+++.+..+.... +...+..++|+|+|++|++++ .++.|.+||+.+++.+
T Consensus 199 l~~~~~~~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~----------- 266 (353)
T 3vgz_A 199 LYTTNADGE-LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNIL----------- 266 (353)
T ss_dssp EEEECTTSE-EEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEE-----------
T ss_pred EEEEcCCCe-EEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-----------
Confidence 999999999 9999999999988887521 234688899999999877766 4599999999887621
Q ss_pred CCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEec
Q 014007 350 TLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFD 410 (432)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~ 410 (432)
..+..+. ...++|+|+|++|++++ .++.|.+|+..
T Consensus 267 ------------------------~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 267 ------------------------AKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp ------------------------EEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ------------------------EEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence 1222222 35699999999776666 68999998863
No 149
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.90 E-value=1e-20 Score=173.30 Aligned_cols=281 Identities=13% Similarity=0.061 Sum_probs=182.7
Q ss_pred CCCCEEEEEc-----CCcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC--
Q 014007 95 QDHGCFAAGT-----DHGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ-- 165 (432)
Q Consensus 95 ~~~~~l~~~~-----~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~-- 165 (432)
+...++.+|+ +++|.+|.++. ++....... +......++|++++..+++++.+. -..+.|.+|++..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~ 86 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEK 86 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCC
Confidence 3344555653 34599998753 443322222 445566788999987666655420 0117999998765
Q ss_pred Cce--eEEee-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEE---eec-----------cCCcceEEEec
Q 014007 166 SRC--IGELS-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQI---ETI-----------ANPKGLCAVSQ 224 (432)
Q Consensus 166 ~~~--~~~~~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~---~~~-----------~~~~~~~~~~~ 224 (432)
++. +.... +......+++ ++.+++ + ++.|.+|++.....+..+ ..+ ...+..++|+|
T Consensus 87 g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 87 GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 432 33333 4556777887 666555 2 789999999754322211 111 11225699999
Q ss_pred CCCcEEEEeecCCCCcEEEEEccCCc-------e-------eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECC
Q 014007 225 GVGSLVLVCPGLQKGQVRVEHYASKR-------T-------KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTL 289 (432)
Q Consensus 225 ~~~~~~~~~~g~~d~~i~i~d~~~~~-------~-------~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~ 289 (432)
+++.++++. ..++.|.+|+++... + .....+...+..++|+|+|++|++++ .++. |++||+.
T Consensus 165 dg~~l~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~ 241 (361)
T 3scy_A 165 DGKYLLADD--LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYA 241 (361)
T ss_dssp TSSEEEEEE--TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEE
T ss_pred CCCEEEEEe--CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEec
Confidence 998776543 457899999987532 2 11223456688999999999887776 5788 9999998
Q ss_pred CCceE--EEEEeC-CCcCceEEEEECCCCCEEEEEeC--CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 290 DGTLL--QEVRRG-ADRAEIYSLAFSSNAQWLAVSSD--KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 290 ~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
+++.. ..+... .+......++|+|||++|+++.. ++.|.+|++......
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~-------------------------- 295 (361)
T 3scy_A 242 DGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT-------------------------- 295 (361)
T ss_dssp TTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC--------------------------
T ss_pred CCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc--------------------------
Confidence 77542 333321 12245789999999999877665 489999999632100
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEe-cCCeEEEEEecCCCCCc
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG-MDGSFYRCQFDPVNGGE 416 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~iw~~~~~~~~~ 416 (432)
...+..+.. ...+..++|+|||++|++++ .++.|.+|.+|..+|+.
T Consensus 296 -----~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 296 -----LTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp -----EEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred -----EEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 000222333 34678999999999999888 57999999999877653
No 150
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.90 E-value=3.4e-21 Score=175.37 Aligned_cols=239 Identities=10% Similarity=0.040 Sum_probs=176.8
Q ss_pred EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCC--ceEEEEEecCccEEE-e---CCeEEEEEcCCCeee
Q 014007 134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLL 207 (432)
Q Consensus 134 ~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~ 207 (432)
.+++.+++.++++++.+ +.|++||+.+++.+..+.... .+..++|+|++..++ + ++.|.+||+.+++.+
T Consensus 4 g~~~~~~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCCTTCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccccCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 34677788888888888 999999999999888887544 688999999997554 2 689999999999888
Q ss_pred EEEeecc------CCcceEEEecCCCcEEEEeec---------CCCCcEEEEEccCCce---eeeeccCCceeEEEEcCC
Q 014007 208 HQIETIA------NPKGLCAVSQGVGSLVLVCPG---------LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQD 269 (432)
Q Consensus 208 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~g---------~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~ 269 (432)
..+.... ..+..++|+|+++.++++... ..++.|.+||+.++.. .....+...+.+++|+|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 79 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred EEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence 7775432 226789999999987665411 1148999999987332 222334557899999999
Q ss_pred CCEEEEEcCCCceEEEEECCCCceEEEEEeCC------------------------------------------------
Q 014007 270 GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA------------------------------------------------ 301 (432)
Q Consensus 270 ~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~------------------------------------------------ 301 (432)
|+ +++++ +. |++||+.+++.+..+..+.
T Consensus 159 g~-l~~~~--~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 159 GS-LYVAG--PD-IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp SC-EEEES--SS-EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred Cc-EEEcc--Cc-EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 99 55553 45 9999999998877665321
Q ss_pred ------------------CcCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeec
Q 014007 302 ------------------DRAEIYSLAFSS-NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGV 362 (432)
Q Consensus 302 ------------------~~~~i~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (432)
+...+..++|+| +|++|+++ ++.|++||+.+++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~------------------------ 288 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI------------------------ 288 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE------------------------
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE------------------------
Confidence 001345678889 99999888 889999999887621
Q ss_pred ccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 363 LPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
..+. ....+..++|+|+|++|++++.++.|++|+++ +++.+..++
T Consensus 289 -----------~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~--~~~~~~~~~ 333 (349)
T 1jmx_B 289 -----------KAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD--TLEKVKNIK 333 (349)
T ss_dssp -----------EEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETT--TTEEEEEEE
T ss_pred -----------EEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecc--ccceeeeee
Confidence 1222 23357799999999999999999999999874 444444443
No 151
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=2.1e-21 Score=172.20 Aligned_cols=216 Identities=10% Similarity=0.113 Sum_probs=160.3
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCC-CeeeEEEeec-cCCcceEEEecCCCcEEE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFAD-LKLLHQIETI-ANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (432)
+.|++||+.+++......|...|.+++|+|++.+++ .++.|++||+.+ ++.......+ ...+..++|+|+++.+++
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 101 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAI 101 (297)
T ss_dssp EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEE
T ss_pred eeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEE
Confidence 899999999988876667999999999999999888 488999999998 7766555444 356778999999987665
Q ss_pred EeecCCCCcEEEE--EccCCceeeeeccCCceeEEEEcCCCCEEE-EEcCCCceEEEEEC--CCCceEEEEEeCCCcCce
Q 014007 232 VCPGLQKGQVRVE--HYASKRTKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNT--LDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 232 ~~~g~~d~~i~i~--d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~--~~~~~~~~~~~~~~~~~i 306 (432)
+. ...++...|| +..++....+..+. .+..++|+|++++|+ +++.++. ++||++ .+++. ..+.. +...+
T Consensus 102 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~-~~l~~~~~~~~~~-~~~~~--~~~~~ 175 (297)
T 2ojh_A 102 SD-KVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQV-FDIYSMDIDSGVE-TRLTH--GEGRN 175 (297)
T ss_dssp EE-CTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTE-EEEEEEETTTCCE-EECCC--SSSCE
T ss_pred EE-eCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCc-eEEEEEECCCCcc-eEccc--CCCcc
Confidence 43 2233445555 55555555555444 489999999999887 7778888 899985 34443 33332 55789
Q ss_pred EEEEECCCCCEEEEEe-CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceE
Q 014007 307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYI 385 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 385 (432)
.+++|+|+|++|+.++ .++.++||++...... ...+..|...+..
T Consensus 176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~----------------------------------~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS----------------------------------VERITDSAYGDWF 221 (297)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------------------------------EEECCCCSEEEEE
T ss_pred ccceECCCCCEEEEEecCCCCccEEEECCCCCC----------------------------------cEEEecCCcccCC
Confidence 9999999999888766 5899999998732210 2223344556888
Q ss_pred EEEccCCCEEEEEecC-----------CeEEEEEecC
Q 014007 386 VAFGHQKNTVVILGMD-----------GSFYRCQFDP 411 (432)
Q Consensus 386 ~~~s~~~~~l~~~~~d-----------g~v~iw~~~~ 411 (432)
++|+|+|++|++++.+ +.|++|+++.
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 9999999999988876 4577777643
No 152
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=8.9e-22 Score=178.26 Aligned_cols=236 Identities=9% Similarity=0.007 Sum_probs=181.0
Q ss_pred CeEEEEEcCCCCEEEEE-cC-CcEEEEEcCCCeeEEEeecccC---cceeEEEEeeeCCeEEEecCC------------C
Q 014007 87 TLLHISFNQDHGCFAAG-TD-HGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG------------P 149 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~-~~-~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~------------~ 149 (432)
.+.+++|+|+|++++++ .. +.|.+||+.+++........ . +...+..+.|++++..++.+. .
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLS-TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC-BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcC-CcccccccccceEECCCCCEEEEEeccccccccccccc
Confidence 47789999999876544 43 44999999887765333332 1 123566788999986666553 3
Q ss_pred CCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 150 DPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
+ +.|.+||+.+++.+..+.....+.+++|+|++.+++ .++.|++||+.+++....+...... ..+.++|++..
T Consensus 114 ~-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~ 187 (337)
T 1pby_B 114 P-----TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLA 187 (337)
T ss_dssp C-----CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCC
T ss_pred C-----ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccC-CCceeCCCccE
Confidence 4 899999999998888887777788999999998665 6899999999999888777544311 23478999886
Q ss_pred EEEEeecCCCC-----------------------cEEEEEccCCceee--eeccCCceeEEEEcCCCCEEEEEcCCCceE
Q 014007 229 LVLVCPGLQKG-----------------------QVRVEHYASKRTKF--IMAHDSRIACFALTQDGQLLATSSTKGTLV 283 (432)
Q Consensus 229 ~~~~~~g~~d~-----------------------~i~i~d~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i 283 (432)
+++.. ..++ .|.+||+.++.... +..+...+.+++|+|+|++|+++ ++. |
T Consensus 188 l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v 262 (337)
T 1pby_B 188 VWNQH--ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-L 262 (337)
T ss_dssp CCCCC--TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-E
T ss_pred Eeeec--cCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-E
Confidence 65432 2222 46899998866542 34566778899999999999988 678 9
Q ss_pred EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
++||+.+++.+..+..+ ..+.+++|+|+|++|++++.++.|++||+.+++.
T Consensus 263 ~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 263 ESFDLEKNASIKRVPLP---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp EEEETTTTEEEEEEECS---SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred EEEECCCCcCcceecCC---CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 99999999988888742 5678999999999999999999999999998873
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=4.8e-22 Score=199.16 Aligned_cols=290 Identities=8% Similarity=0.010 Sum_probs=193.2
Q ss_pred CeEEEEEcCCCCEEEEEcC----------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTD----------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~----------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
.|.+++|||||++|+++.+ ..+.+||+++++........ ++...+..+.|+|++..++.++. +
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~~~~SPdG~~la~~~~------~ 134 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VSNAKLQYAGWGPKGQQLIFIFE------N 134 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CCSCCCSBCCBCSSTTCEEEEET------T
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCc-cccccccccEECCCCCEEEEEEC------C
Confidence 4899999999999998864 34889999887653222221 34445788999999988887764 6
Q ss_pred eEEEEeCCCCceeEEee-cCCce------------------EEEEEecCccEEEe---CC--------------------
Q 014007 157 KVMIWDDHQSRCIGELS-FRSEV------------------RSVKLRRDRIIVVL---EQ-------------------- 194 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~-~~~~v------------------~~~~~~~~~~~~~~---d~-------------------- 194 (432)
.|++||+.+++...... +...+ .+++|+|||+.+++ ++
T Consensus 135 ~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (723)
T 1xfd_A 135 NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVK 214 (723)
T ss_dssp EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCE
T ss_pred eEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcce
Confidence 99999999887766554 33333 78999999998873 32
Q ss_pred --------------eEEEEEcCCCeeeEEEeec------cCCcceEEEecCCCcEEEEee-cCCCCcEEEEEccCCceee
Q 014007 195 --------------KIFVYNFADLKLLHQIETI------ANPKGLCAVSQGVGSLVLVCP-GLQKGQVRVEHYASKRTKF 253 (432)
Q Consensus 195 --------------~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~i~d~~~~~~~~ 253 (432)
.|++||+.+++....+..+ ...+..++|+|||+.++.... +..+..|++||+.++....
T Consensus 215 ~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 215 PYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp EEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred eccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 7999999888765555543 345677999999985543321 2234689999998876544
Q ss_pred e-e-ccCCcee----EEEEcCCCCEEEE--EcCCC------ceEEEEE-CCCCc--eEEEEEeCCCcCceEE-EEECCCC
Q 014007 254 I-M-AHDSRIA----CFALTQDGQLLAT--SSTKG------TLVRIFN-TLDGT--LLQEVRRGADRAEIYS-LAFSSNA 315 (432)
Q Consensus 254 ~-~-~~~~~i~----~~~~sp~~~~l~~--~~~dg------~~i~vwd-~~~~~--~~~~~~~~~~~~~i~~-~~~s~~~ 315 (432)
+ . .+...+. .++|+|||+.|+. +..++ . |++|| ..+++ +...+.. ....+.. ++|+|||
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~-l~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH-ITVSSSQPNSSNDNIQSITS--GDWDVTKILAYDEKG 371 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE-EEEECSSCCSSSCCCCBSCC--SSSCEEEEEEEETTT
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE-EEEEeccCCCCccceeEeec--CCeEEEeeeEEcCCC
Confidence 3 2 3344443 8899999997775 44566 4 77777 34444 1444442 2234544 6999999
Q ss_pred CEEEEEeCC---CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEe---cCCCceEEEEc
Q 014007 316 QWLAVSSDK---GTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL---VEGSPYIVAFG 389 (432)
Q Consensus 316 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~s 389 (432)
+.|+..+.+ +.++||++......... .+.. |...+..++|+
T Consensus 372 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------~l~~~~~~~~~~~~~~~s 418 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYSANTVGNFNRQ---------------------------------CLSCDLVENCTYFSASFS 418 (723)
T ss_dssp TEEEEEESSSCTTCCEEEEECSSTTCCCB---------------------------------CSSTTSSSSCCCCEEEEC
T ss_pred CEEEEEEcCCCCcceEEEEEeCCCCCCcc---------------------------------eecccccCCCCeEEEEEC
Confidence 999866654 78999999754310000 0111 34557889999
Q ss_pred cCCCEEEEEecC-C--eEEEEEecCCCCCcceEee
Q 014007 390 HQKNTVVILGMD-G--SFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 390 ~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~ 421 (432)
|||++|+..... + ...++ +...++++..++
T Consensus 419 pdg~~l~~~~~~~~~p~~~~~--~~~~~~~~~~~~ 451 (723)
T 1xfd_A 419 HSMDFFLLKCEGPGVPMVTVH--NTTDKKKMFDLE 451 (723)
T ss_dssp TTSSEEEEECCSSSSCCEEEE--ETTTCCEEEEEE
T ss_pred CCCCEEEEEccCCCCCeEEEE--ECCCCCEEEEec
Confidence 999988865442 2 23333 344455544443
No 154
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=8.9e-23 Score=204.33 Aligned_cols=278 Identities=8% Similarity=-0.023 Sum_probs=191.5
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce---eEEEEeeeCCeEEEecCCC---------CCCCCCCe
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI---GVVEMLFRCNILALVGGGP---------DPQYPLNK 157 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~s~~~---------d~~~~~~~ 157 (432)
+++|+|||++++.+.++.|++|++.+++.. ..+. ++.. .+..+.|+||+..++.++. + +.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~--~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~-----~~ 91 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSY--TILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT-----AT 91 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEE--EEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE-----EE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEE--EEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecc-----eE
Confidence 579999998777776777999999888765 3332 2322 3889999999998887654 5 89
Q ss_pred EEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEEe-eccC-----------------Cc
Q 014007 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIE-TIAN-----------------PK 217 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~-----------------~~ 217 (432)
|++||+.+++.+........+..++|+|||+.++ .++.|++||+.+++..+... ++.. ..
T Consensus 92 i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp EEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred EEEEECCCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 9999999887632222346788999999999888 48999999998877644321 1111 11
Q ss_pred ceEEEecCCCcEEEEeecC-------------------------------CCCcEEEEEccCCcee---------eeecc
Q 014007 218 GLCAVSQGVGSLVLVCPGL-------------------------------QKGQVRVEHYASKRTK---------FIMAH 257 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~-------------------------------~d~~i~i~d~~~~~~~---------~~~~~ 257 (432)
..++|+|||+.++++.... ....|++||+.++... .+.+|
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 251 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASS 251 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTS
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCC
Confidence 4799999999877654210 0127889999886531 13358
Q ss_pred CCceeEEEEcCCCCEEEEEcCC----CceEEEEE----CCCCceEEEEE---eCCCcCceE-----EEEECCCCCEEEE-
Q 014007 258 DSRIACFALTQDGQLLATSSTK----GTLVRIFN----TLDGTLLQEVR---RGADRAEIY-----SLAFSSNAQWLAV- 320 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~d----g~~i~vwd----~~~~~~~~~~~---~~~~~~~i~-----~~~~s~~~~~l~~- 320 (432)
...+.+++|+||++++++.... .. |++|| +.++++...+. . .+...+. .+.|+|||+.|+.
T Consensus 252 ~~~~~~~~~SpD~~~~~~~~~~~~~~~~-l~~~d~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 252 DYYFSWLTWVTDERVCLQWLKRVQNVSV-LSICDFREDWQTWDCPKTQEHIEE-SRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp CEEEEEEEESSSSEEEEEEEESSTTEEE-EEEEEECSSSSSEECCGGGEEEEE-CSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred cceEEEeEEeCCCeEEEEEeccccCeEE-EEEEcccCCCCCCceEEEEecccc-cCCceEccccCCccEECCCCCeEEEE
Confidence 8889999999998877764322 24 88899 77776654442 2 1445555 7899999996554
Q ss_pred -EeCCC--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEE
Q 014007 321 -SSDKG--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVI 397 (432)
Q Consensus 321 -~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 397 (432)
...+| .|++||+.+++. ..+..+...+..+.++ +++.|+.
T Consensus 330 ~~~~~g~~~l~~~~~~~~~~------------------------------------~~lt~~~~~v~~~~~~-d~~~i~~ 372 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVENA------------------------------------IQITSGKWEAINIFRV-TQDSLFY 372 (719)
T ss_dssp EECTTSCEEEEEESSCSTTC------------------------------------EECSCSSSCEEEEEEE-CSSEEEE
T ss_pred EEccCCceEEEEEECCCCce------------------------------------EecccCceEEEEEEEE-eCCEEEE
Confidence 44555 566667655541 1122233346667777 8887776
Q ss_pred EecC-----CeEEEEEecCCCC
Q 014007 398 LGMD-----GSFYRCQFDPVNG 414 (432)
Q Consensus 398 ~~~d-----g~v~iw~~~~~~~ 414 (432)
.+.+ +.+++|.++...+
T Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EESCGGGCTTCBEEEEEECSSS
T ss_pred EEecCCCCCceEEEEEEeCCCC
Confidence 6655 8899999987544
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.5e-20 Score=171.12 Aligned_cols=240 Identities=11% Similarity=0.143 Sum_probs=165.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEc---CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CCCCCCCCeEE
Q 014007 84 PPPTLLHISFNQDHGCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVM 159 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~v~ 159 (432)
+...+..++|+|||++++++. ++.|++|++++++......+. .+...+..++|++++..+++++ .+ +.|.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~p~~~a~spdg~~l~~~~~~~-----~~v~ 111 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVV-APGTPPAYVAVDEARQLVYSANYHK-----GTAE 111 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-EESCCCSEEEEETTTTEEEEEETTT-----TEEE
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeee-cCCCCCEEEEECCCCCEEEEEeCCC-----CEEE
Confidence 345667899999999444443 244999999776654434432 3556778899999997666554 55 8999
Q ss_pred EEeCCC-C--ceeEEeecC----------CceEEEEEecCccEEEe---CCeEEEEEcC-CCeeeE--EEeec-cCCcce
Q 014007 160 IWDDHQ-S--RCIGELSFR----------SEVRSVKLRRDRIIVVL---EQKIFVYNFA-DLKLLH--QIETI-ANPKGL 219 (432)
Q Consensus 160 iwd~~~-~--~~~~~~~~~----------~~v~~~~~~~~~~~~~~---d~~i~i~d~~-~~~~~~--~~~~~-~~~~~~ 219 (432)
+|++.. + +.+..+.+. ..+.+++|+|+++++++ ++.|++|++. +++... .+... ......
T Consensus 112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 999863 3 233333322 24888999999995554 6789999998 454322 22222 224557
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccC--Ccee---eeeccC------CceeEEEEcCCCCEEE-EEcCCCceEEEEE
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK---FIMAHD------SRIACFALTQDGQLLA-TSSTKGTLVRIFN 287 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~---~~~~~~------~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd 287 (432)
++|+|+|+.++++. ..++.|.+|+++. +... .+.... ..+..++|+|+|++|+ +...++. |.+||
T Consensus 192 ~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~ 268 (347)
T 3hfq_A 192 LVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFA 268 (347)
T ss_dssp EEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEE
T ss_pred EEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEE
Confidence 89999998776543 4678999999885 3322 222222 4588999999999875 4556788 99999
Q ss_pred CCCC---ceEEEEEeCCCcCceEEEEECCCCCEEEEEeC-CCeEEEEEecC
Q 014007 288 TLDG---TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KGTVHVFNLKV 334 (432)
Q Consensus 288 ~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 334 (432)
+... +.+..+.. +...+..++|+|||++|++++. ++.|.+|+++.
T Consensus 269 ~~~~g~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 269 VTADGHLTLIQQIST--EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp ECGGGCEEEEEEEEC--SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ECCCCcEEEeEEEec--CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 8732 44445543 3356889999999999888875 58999996643
No 156
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.88 E-value=4.3e-21 Score=177.93 Aligned_cols=279 Identities=10% Similarity=-0.014 Sum_probs=188.5
Q ss_pred CeEEEEEcCCCCEEEEEcCC----cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 87 TLLHISFNQDHGCFAAGTDH----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
.+.+++|+|||++|+...+. .|.+|++++++.. .+..++......+.|+|++..++....+ +.|++||
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~---~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d 108 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV---QLTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMKVD 108 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE---ECCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE---EeecCCCCccccceECCCCCEEEEEEcC-----CcEEEEE
Confidence 36778999999998877532 3888898876643 2221222222236789999888777776 7899999
Q ss_pred CCCCceeEEee-cCCceEE-------------------EEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeecc
Q 014007 163 DHQSRCIGELS-FRSEVRS-------------------VKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIA 214 (432)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~-------------------~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~ 214 (432)
+.+++...... +...... +.|+|++..++. +..|++||+.+++..... .+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~ 187 (396)
T 3c5m_A 109 LETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT 187 (396)
T ss_dssp TTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred CCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence 99887665555 3332222 245666665441 347999999887765444 455
Q ss_pred CCcceEEEec-CCCcEEEEeecCCC----CcEEEEEccCCceeeeecc--CCceeEEEEcCCCCEEEEEcCC-----Cce
Q 014007 215 NPKGLCAVSQ-GVGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTK-----GTL 282 (432)
Q Consensus 215 ~~~~~~~~~~-~~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d-----g~~ 282 (432)
..+..+.|+| +++.++++..+ .. ..|.+||+.++....+..+ ...+..++|+|+|++|+.++.+ +.
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~- 265 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV- 265 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEE-
T ss_pred cccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccce-
Confidence 6677899999 77766665432 22 5788999887665555443 2358889999999988777554 55
Q ss_pred EEEEECCCCceEEEEEeCCCcCceEEEEECC-CCCEEEEEe----------------CCCeEEEEEecCCCCCCCCCCCC
Q 014007 283 VRIFNTLDGTLLQEVRRGADRAEIYSLAFSS-NAQWLAVSS----------------DKGTVHVFNLKVNSGSARSEPRS 345 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~ 345 (432)
|++||+.+++....... . ... +.|+| ||++|+.++ .++.|++||+.+++..
T Consensus 266 l~~~d~~~g~~~~l~~~---~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~------- 333 (396)
T 3c5m_A 266 IYKANPETLENEEVMVM---P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ------- 333 (396)
T ss_dssp EEEECTTTCCEEEEEEC---C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-------
T ss_pred EEEEECCCCCeEEeeeC---C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-------
Confidence 99999988876544332 1 233 89999 999888754 3478999999876521
Q ss_pred CCCCCCCCCCceeEeecccceeecceeeEEEEecCC-----------CceEEEEccCCCEEEEEec-CCeEEEEEecCCC
Q 014007 346 TSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-----------SPYIVAFGHQKNTVVILGM-DGSFYRCQFDPVN 413 (432)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~s~~~~~l~~~~~-dg~v~iw~~~~~~ 413 (432)
.+..+.. .+..++|+|||+.|+.++. +|...||.++...
T Consensus 334 -----------------------------~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~ 384 (396)
T 3c5m_A 334 -----------------------------KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPE 384 (396)
T ss_dssp -----------------------------EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCT
T ss_pred -----------------------------EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcc
Confidence 1222322 2566899999998887765 6778888887765
Q ss_pred CCcc
Q 014007 414 GGEM 417 (432)
Q Consensus 414 ~~~~ 417 (432)
+...
T Consensus 385 ~~~~ 388 (396)
T 3c5m_A 385 SYKH 388 (396)
T ss_dssp TCC-
T ss_pred cccc
Confidence 5443
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=1.1e-19 Score=166.63 Aligned_cols=265 Identities=10% Similarity=-0.000 Sum_probs=179.0
Q ss_pred CcEEEEEcC--CCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC-CCceeEEeec--CCceEE
Q 014007 106 HGFRIYNCD--PFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH-QSRCIGELSF--RSEVRS 180 (432)
Q Consensus 106 ~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~-~~~~~~~~~~--~~~v~~ 180 (432)
++|.+|+++ +++..............+..+++++++..+++++. +.|.+|++. +++......+ .+.+..
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~------~~v~~~~~~~~g~~~~~~~~~~~g~~~~ 87 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM------KKWSSFAVKSPTEIVHEASHPIGGHPRA 87 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB------TEEEEEEEEETTEEEEEEEEECCSSGGG
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc------ceEEEEEECCCCCEEEeeEeecCCCCcc
Confidence 458888764 44443222221113345678899999987777665 489999987 7766544432 244667
Q ss_pred EEEecCccE--EE----------------eCCeEEEEEcC-CCeeeEEEee----ccCCcceEEEecCCCcEEEEeecCC
Q 014007 181 VKLRRDRII--VV----------------LEQKIFVYNFA-DLKLLHQIET----IANPKGLCAVSQGVGSLVLVCPGLQ 237 (432)
Q Consensus 181 ~~~~~~~~~--~~----------------~d~~i~i~d~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~ 237 (432)
++|+|+|++ ++ .++.+.+|++. +++....+.. +...+..++|+|+|+.++++. ..
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~ 165 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD--LT 165 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TT
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc--CC
Confidence 899999984 32 25689999997 4665444432 345677899999998765443 34
Q ss_pred CCcEEEEEcc-CCceee---ee--ccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECC--CCceEE---EEEeCC----
Q 014007 238 KGQVRVEHYA-SKRTKF---IM--AHDSRIACFALTQDGQLLATSST-KGTLVRIFNTL--DGTLLQ---EVRRGA---- 301 (432)
Q Consensus 238 d~~i~i~d~~-~~~~~~---~~--~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~--~~~~~~---~~~~~~---- 301 (432)
++.|.+||++ ++.... +. .|...+..++|+|+|++|++++. ++. |.+|++. +++... .+....
T Consensus 166 ~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~-v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 244 (365)
T 1jof_A 166 ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNR-ICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCe-EEEEEEeCCCCcEEEccceEEcCCCCcC
Confidence 6799999998 554432 22 24567999999999999888765 677 9999865 566532 233211
Q ss_pred -CcC------ceEEEE-ECCCCCEEEEEeCC-C-----eEEEEEec-CCCCCCCCCCCCCCCCCCCCCCceeEeecccce
Q 014007 302 -DRA------EIYSLA-FSSNAQWLAVSSDK-G-----TVHVFNLK-VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKY 366 (432)
Q Consensus 302 -~~~------~i~~~~-~s~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (432)
+.. .+..++ |+|||++|+++..+ + +|.+|++. +++..
T Consensus 245 g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~---------------------------- 296 (365)
T 1jof_A 245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE---------------------------- 296 (365)
T ss_dssp CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE----------------------------
T ss_pred CcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE----------------------------
Confidence 111 488999 99999998876632 3 89999996 34310
Q ss_pred eecceeeE-EEEecCCCceEEEEcc---CCCEEEEEecC-CeEEEEEecCC
Q 014007 367 FSSEWSVA-QFRLVEGSPYIVAFGH---QKNTVVILGMD-GSFYRCQFDPV 412 (432)
Q Consensus 367 ~~~~~~~~-~~~~~~~~v~~~~~s~---~~~~l~~~~~d-g~v~iw~~~~~ 412 (432)
.+. ....+...+..++|+| ||++|++++.+ +.|.+|+++..
T Consensus 297 -----~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 297 -----KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -----EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -----EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 011 1223444577899999 89999999875 89999999875
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2.1e-19 Score=164.56 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=161.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEcC-----CcEEEEEcCC--CeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 84 PPPTLLHISFNQDHGCFAAGTD-----HGFRIYNCDP--FREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~-----~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
+...+..++|+|||++|++++. +.|.+|+++. ++........ .+......+++ ....++++...+ +
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~~~~p~~~~~-dg~~l~~~~~~~-----~ 120 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TMGADPCYLTT-NGKNIVTANYSG-----G 120 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CSSSCEEEEEE-CSSEEEEEETTT-----T
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cCCCCcEEEEE-CCCEEEEEECCC-----C
Confidence 5667788999999998888875 3599999875 4433333332 24445666667 333344444455 8
Q ss_pred eEEEEeCCCCceeEE----eec-----------CCceEEEEEecCccEEE-e---CCeEEEEEcCCCee------e----
Q 014007 157 KVMIWDDHQSRCIGE----LSF-----------RSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKL------L---- 207 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~----~~~-----------~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~------~---- 207 (432)
.|.+|++.....+.. +.+ ...+.+++|+|++++++ . ++.|++|++..... +
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 999999975433221 111 22357899999998665 2 67999999875331 1
Q ss_pred --EEE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee------eccCCceeEEEEcCCCCEEEEEcC
Q 014007 208 --HQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI------MAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 208 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
... .........++|+|+++.++++. ..++.|.+|++.++.+..+ ..+......++|+|||++|+++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~ 278 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLIN--EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR 278 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEc--CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence 111 12233456799999998776553 3579999999987544322 223345789999999999877665
Q ss_pred C--CceEEEEECC--CCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 279 K--GTLVRIFNTL--DGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 279 d--g~~i~vwd~~--~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
+ +. |.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|+++.
T Consensus 279 ~~~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 279 LKADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp SSSCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 4 77 9999985 455 3434442 35678999999999988887 679999977653
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.8e-21 Score=190.05 Aligned_cols=230 Identities=10% Similarity=-0.012 Sum_probs=172.0
Q ss_pred cceeEEEEeeeCCeEEEecCCC-CCCCCCCeEEEEeCCCCceeEEeecC-CceEEEEEecCccEEE-eC-----CeEEEE
Q 014007 128 GGIGVVEMLFRCNILALVGGGP-DPQYPLNKVMIWDDHQSRCIGELSFR-SEVRSVKLRRDRIIVV-LE-----QKIFVY 199 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~-d~~~~~~~v~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~-~d-----~~i~i~ 199 (432)
....+..++|++|+..++.++. + |+++||++..++..+...+. ..+..++|+|| ++++ .+ ....+|
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~-----g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSE-----GSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALF 93 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEET-----TEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEE
T ss_pred hccchheeecCCCCCeEEEEEccC-----CceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEE
Confidence 4567999999999988887765 7 99999998666655444455 68999999999 6555 22 344554
Q ss_pred EcCC---CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE
Q 014007 200 NFAD---LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS 276 (432)
Q Consensus 200 d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~ 276 (432)
.+.. +... .+.. .......+|+|+++.+++++ + .++.+.+||+.++....+..+.. .+++|+|||++|+++
T Consensus 94 ~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s-~-~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTG-A-TEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEE-E-CSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEe-c-CCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEE
Confidence 4432 2222 3322 22345779999999887765 3 34555699999987777665554 899999999999988
Q ss_pred cCC----CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC--eEEEEEecCCCCCCCCCCCCCCCCC
Q 014007 277 STK----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG--TVHVFNLKVNSGSARSEPRSTSDPT 350 (432)
Q Consensus 277 ~~d----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (432)
+.+ +. |++||+.+++.. .+.. +...+..++|||||++|+++..++ .|++||+.+++..
T Consensus 168 ~~~~~~~~~-i~~~d~~~g~~~-~l~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~------------ 231 (582)
T 3o4h_A 168 GFFGGGRVS-LFTSNLSSGGLR-VFDS--GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE------------ 231 (582)
T ss_dssp EEEETTEEE-EEEEETTTCCCE-EECC--SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE------------
T ss_pred EEcCCCCeE-EEEEcCCCCCce-Eeec--CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE------------
Confidence 877 67 999999888865 4442 557889999999999999888888 8999999887621
Q ss_pred CCCCCceeEeecccceeecceeeEEEEecCCCceEEE--------EccCCCEEEEEecCCeEEEEEe
Q 014007 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVA--------FGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
.+..|...+..++ |+|||..+++++.||.+++|.+
T Consensus 232 ------------------------~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 232 ------------------------DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ------------------------ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ------------------------EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 2233444455555 9999998999999999999997
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=5.2e-20 Score=167.49 Aligned_cols=228 Identities=10% Similarity=0.042 Sum_probs=168.7
Q ss_pred EEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 90 HISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
.++++++++++++++ ++.|++||+.+++....... +....+..+++++++. +++++..+ +.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM--PDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEEC--SSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEec--CCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCc
Confidence 356788888888877 55599999988876533322 2222467888999885 44555556 899999999998
Q ss_pred eeEEeecC-------CceEEEEEecCccEEEe---C------------CeEEEEEcCCCee---eEEEeeccCCcceEEE
Q 014007 168 CIGELSFR-------SEVRSVKLRRDRIIVVL---E------------QKIFVYNFADLKL---LHQIETIANPKGLCAV 222 (432)
Q Consensus 168 ~~~~~~~~-------~~v~~~~~~~~~~~~~~---d------------~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~ 222 (432)
.+..+... ..+.+++|+|++++++. + +.|.+||+.+++. +..+.. ...+..++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 155 (349)
T 1jmx_B 77 NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRA 155 (349)
T ss_dssp EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEE
T ss_pred EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeE
Confidence 88777632 23789999999987772 3 8999999988543 333333 335778899
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccCCcee-eeecc--------------------------------------------
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAH-------------------------------------------- 257 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~-------------------------------------------- 257 (432)
+|+++ +++ . + +.|.+||..++... .+..+
T Consensus 156 s~dg~-l~~-~-~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 156 ADDGS-LYV-A-G---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp CTTSC-EEE-E-S---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred CCCCc-EEE-c-c---CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 99998 544 2 2 34999998775432 22211
Q ss_pred ------------------------CCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 258 ------------------------DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 258 ------------------------~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
...+..++|+| +|++|+++ ++. |++||+.+++.+..+..+ ..+.+++|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s 303 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLD---HTYYCVAFD 303 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCC---CCccceEEC
Confidence 11355778889 99999888 778 999999999998888732 457899999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
|+|++|++++.++.|++||+.+++.
T Consensus 304 ~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp SSSSCEEEESBSSEEEEEETTTTEE
T ss_pred CCCCEEEEecCCCeEEEEeccccce
Confidence 9999998888899999999988763
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.86 E-value=2.1e-19 Score=164.69 Aligned_cols=241 Identities=11% Similarity=0.100 Sum_probs=166.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcC-CCeeEEEeecccCcceeEEEEeeeCCeE--EEecCC-------------
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCD-PFREIFRRDFERGGGIGVVEMLFRCNIL--ALVGGG------------- 148 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~------------- 148 (432)
...+..++|+|||++|++++.+.|.+|+++ +++........ .+. ....++++|++. ++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~-~~g-~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP-IGG-HPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE-CCS-SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEee-cCC-CCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 346788999999998888775589999997 66543222221 111 244588999988 454553
Q ss_pred CCCCCCCCeEEEEeCC-CCceeEEee-----cCCceEEEEEecCccEEEe----CCeEEEEEcC-CCeee--EEEee--c
Q 014007 149 PDPQYPLNKVMIWDDH-QSRCIGELS-----FRSEVRSVKLRRDRIIVVL----EQKIFVYNFA-DLKLL--HQIET--I 213 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~-~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~----d~~i~i~d~~-~~~~~--~~~~~--~ 213 (432)
.+ +.+.+|++. +++....+. +...+.+++|+|||++++. ++.|++||+. +++.. ..+.. +
T Consensus 117 ~~-----g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 117 FA-----GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SC-----CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred CC-----ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 45 899999997 465544333 4567999999999987663 5689999998 66643 23331 2
Q ss_pred cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Ccee----eee-------ccCC------ceeEEE-EcCCCCEE
Q 014007 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRTK----FIM-------AHDS------RIACFA-LTQDGQLL 273 (432)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~~----~~~-------~~~~------~i~~~~-~sp~~~~l 273 (432)
......++|+|+|+.++++. ..++.|.+|+++. +... .+. +|.. .+..++ |+|||++|
T Consensus 192 g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCCEeEECCCCCEEEEEE--CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 44567899999999776653 3578999998763 3321 121 1222 588999 99999998
Q ss_pred EEEcCCC------ceEEEEECC-CCceEEEEE-eCCCcCceEEEEECC---CCCEEEEEeC-CCeEEEEEecCC
Q 014007 274 ATSSTKG------TLVRIFNTL-DGTLLQEVR-RGADRAEIYSLAFSS---NAQWLAVSSD-KGTVHVFNLKVN 335 (432)
Q Consensus 274 ~~~~~dg------~~i~vwd~~-~~~~~~~~~-~~~~~~~i~~~~~s~---~~~~l~~~~~-dg~i~iwd~~~~ 335 (432)
++++.+. . |.+|++. +++...... ...+...+..++|+| ||++|++++. ++.|.+|+++..
T Consensus 270 ~v~~~~~~~~~~~~-i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGY-IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCE-EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCe-EEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 8776432 7 9999996 666543221 111234567889999 8999999886 489999999765
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.85 E-value=3.5e-20 Score=185.76 Aligned_cols=245 Identities=10% Similarity=0.022 Sum_probs=167.3
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce-----eEEEEeeeCCeEEEecCCCCCC-C---CCCe
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-----GVVEMLFRCNILALVGGGPDPQ-Y---PLNK 157 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~s~~~d~~-~---~~~~ 157 (432)
...++.|+|||++|+++ ++.|++|++.+++... .+. ++.. ....+.|+||+..++.+..+.. + ..+.
T Consensus 18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSV--FLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEE--EEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCCCcEEEEc-CCcEEEEECCCCceEE--EEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 45678999999999987 7779999999887653 233 2322 2234788999988877665300 0 0145
Q ss_pred EEEEeCCCCceeEEeecCCceEEEEEecCccEEE--eCCeEEEEEcCCCeeeEEE-eecc-----------------CCc
Q 014007 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV--LEQKIFVYNFADLKLLHQI-ETIA-----------------NPK 217 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~-~~~~-----------------~~~ 217 (432)
+.+||+.+++......+...+...+|+|||+.++ .++.|++|++.+++..+.. .++. ...
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~ 173 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY 173 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCC
Confidence 6799999988665444778899999999999888 4899999999887644321 1111 112
Q ss_pred ceEEEecCCCcEEEEeecC-------------------------------CC--CcEEEEEccC---C---ceeeeec--
Q 014007 218 GLCAVSQGVGSLVLVCPGL-------------------------------QK--GQVRVEHYAS---K---RTKFIMA-- 256 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~-------------------------------~d--~~i~i~d~~~---~---~~~~~~~-- 256 (432)
..+.|+|||+.++++.... .+ ..|.+||+.+ + ....+..
T Consensus 174 ~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~ 253 (740)
T 4a5s_A 174 SALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPA 253 (740)
T ss_dssp BCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCH
T ss_pred cceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCc
Confidence 3488999999877653110 01 1588899988 6 4444443
Q ss_pred ----cCCceeEEEEcCCCCEEEEEcC----CCceEEEEECCCCc----eE--EEEEeCCCcCceE-----EEEECCCCCE
Q 014007 257 ----HDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDGT----LL--QEVRRGADRAEIY-----SLAFSSNAQW 317 (432)
Q Consensus 257 ----~~~~i~~~~~sp~~~~l~~~~~----dg~~i~vwd~~~~~----~~--~~~~~~~~~~~i~-----~~~~s~~~~~ 317 (432)
|...+..++|+|||+.++.... +.. |++||+.+++ +. ..+....+...+. .+.|+|||+.
T Consensus 254 ~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~-i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 254 SMLIGDHYLCDVTWATQERISLQWLRRIQNYSV-MDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE-EEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEE-EEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 7888999999999997665533 336 9999999887 22 2221112334443 7899999998
Q ss_pred EE-EEe-CC--CeEEEEEecCCC
Q 014007 318 LA-VSS-DK--GTVHVFNLKVNS 336 (432)
Q Consensus 318 l~-~~~-~d--g~i~iwd~~~~~ 336 (432)
|+ ..+ .+ ..|++||+.+++
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSS
T ss_pred EEEEEEcCCCceEEEEEECCCCc
Confidence 77 665 33 368888887655
No 163
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=4.7e-20 Score=172.49 Aligned_cols=218 Identities=11% Similarity=0.086 Sum_probs=153.0
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe--CCeEEEEEcCCCe----------ee------EEEeeccCCc
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLK----------LL------HQIETIANPK 217 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~----------~~------~~~~~~~~~~ 217 (432)
+.+++|+... . + ....+..+++++++.+++. ...+++|+..... .+ ..+ .+...+
T Consensus 23 ~~vri~~~~~-~----~-~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 95 (434)
T 2oit_A 23 KKVRIFDSPE-E----L-PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPI 95 (434)
T ss_dssp CEEECSCCCS-S----C-CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCE
T ss_pred eeEEecCCcc-c----c-CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcc
Confidence 5677776421 1 1 2446788999998877773 3448888753210 00 111 234568
Q ss_pred ceEEEecCCCcEEEEe-ecCCCCcEEEEEccCC------------ceeeeeccCCceeEEEEcCC-CCEEEEEcCCCceE
Q 014007 218 GLCAVSQGVGSLVLVC-PGLQKGQVRVEHYASK------------RTKFIMAHDSRIACFALTQD-GQLLATSSTKGTLV 283 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~------------~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~~i 283 (432)
..++|+++++.+++++ +|+.|+.|++||+++. ....+.+|...|.+++|+|+ +++|++++.||+ |
T Consensus 96 ~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v 174 (434)
T 2oit_A 96 HHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-I 174 (434)
T ss_dssp EEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-E
T ss_pred cEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-E
Confidence 8999999998765432 4668999999998753 13445679999999999997 899999999999 9
Q ss_pred EEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecc
Q 014007 284 RIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVL 363 (432)
Q Consensus 284 ~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (432)
++||++++..+..... |...|.+++|+|+|++|++|+.||+|++||++ ++.......+
T Consensus 175 ~iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~------------------- 232 (434)
T 2oit_A 175 AVLQVTETVKVCATLP--STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCP------------------- 232 (434)
T ss_dssp EEEEESSSEEEEEEEC--GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCC-------------------
T ss_pred EEEEcCCCcceeeccC--CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCC-------------------
Confidence 9999999876655553 66899999999999999999999999999998 3311100000
Q ss_pred cceeecceeeEEEEecCCCceEEEEccCCCEEEE-EecCCe------EEEEEecCC
Q 014007 364 PKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVI-LGMDGS------FYRCQFDPV 412 (432)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~------v~iw~~~~~ 412 (432)
... ...|...|.+++|++++.++++ .+.||. +++|++...
T Consensus 233 -~~~--------~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 233 -PFY--------ESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp -TTC--------CTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred -ccc--------CCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 000 0012236889999999888764 334443 899998654
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.84 E-value=2.5e-18 Score=160.80 Aligned_cols=238 Identities=14% Similarity=0.109 Sum_probs=165.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe----------eEE----EeecccCcceeEEEEeeeCCeEEEe----c
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFR----------EIF----RRDFERGGGIGVVEMLFRCNILALV----G 146 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~----------~~~----~~~~~~~~~~~v~~~~~~~~~~~~~----s 146 (432)
...++.+++++++.+|++++.++++||+..... ... ...+ .+...+.+++|++++..++ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV--PMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE--CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc--cCCCcccEEEEcCCCCEEEEEEec
Confidence 446889999999999999987789998763110 000 0111 2455799999999999998 8
Q ss_pred CCCCCCCCCCeEEEEeCCCC--------ce---eEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEE
Q 014007 147 GGPDPQYPLNKVMIWDDHQS--------RC---IGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQI 210 (432)
Q Consensus 147 ~~~d~~~~~~~v~iwd~~~~--------~~---~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~ 210 (432)
++.| +.|++||+.++ +. +..+. |...|.+++|+|+ +.++++ |++|++||++++..+...
T Consensus 114 gs~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 114 SEYG-----SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp TTTE-----EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred cCCC-----ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 8888 99999998765 22 23334 7899999999997 676663 999999999998777666
Q ss_pred eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc-------CCceeEEEEcCCCCEEEEEc-CCC--
Q 014007 211 ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH-------DSRIACFALTQDGQLLATSS-TKG-- 280 (432)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~-~dg-- 280 (432)
..|...+.+++|+|+|+.++. |+.||.|++||.+......+..| ...|.+++|++++.++++.+ .+|
T Consensus 189 ~~~~~~v~~v~wspdg~~las---gs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAV---GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEE---EETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred cCCCCceeEEEEcCCCCEEEE---EcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 678889999999999886653 34899999999985434444333 34899999999988775533 332
Q ss_pred ----ceEEEEECCCCc-----eEEEEEeC-----CCcCceEEEEECCCCCEEEEEe-CCCeEEEEEec
Q 014007 281 ----TLVRIFNTLDGT-----LLQEVRRG-----ADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLK 333 (432)
Q Consensus 281 ----~~i~vwd~~~~~-----~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 333 (432)
. +++||++..+ ....+... ....+...+.+-++.+++++++ ..+.|.|....
T Consensus 266 ~~~~~-v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 266 ETSPD-VVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp SSCCE-EEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred CCCCc-eEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 3 8899998652 11111110 1112223344446767666655 55667777654
No 165
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.82 E-value=2.1e-17 Score=150.30 Aligned_cols=262 Identities=8% Similarity=0.031 Sum_probs=177.0
Q ss_pred CCCeEEEEEcCCCCEEEEEc----------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCC
Q 014007 85 PPTLLHISFNQDHGCFAAGT----------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYP 154 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~----------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~ 154 (432)
...+...++ ||+.++... +..|.+|++++++... + ..+..+.|+|++..++....+..-.
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---l-----~~~~~~~~SpDg~~la~~~~~~~~~ 83 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---I-----ENATMPRISPDGKKIAFMRANEEKK 83 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---E-----ESCEEEEECTTSSEEEEEEEETTTT
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---c-----ccCCCeEECCCCCEEEEEEeccCCC
Confidence 346777888 899887642 2238899988765432 2 3567789999998776654320000
Q ss_pred CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C---------------------------CeEEEEEcCCC
Q 014007 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E---------------------------QKIFVYNFADL 204 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d---------------------------~~i~i~d~~~~ 204 (432)
...|++||+.+++......+.. +..++|+||+..++. + ..|++||+.++
T Consensus 84 ~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 84 VSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred cceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 0358899998887766655555 999999999987762 2 46999999888
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCC----C-cEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----G-QVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK 279 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----~-~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d 279 (432)
+.+..+.. . .+..+.|+|++ ++++.....+ . ...+|.++++....+..+ ..+..+ +|+|++|+.++.+
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~ 235 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKP 235 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECC
T ss_pred eEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEcc
Confidence 77455555 3 77889999998 4443322111 2 344444445555555555 555554 9999988877644
Q ss_pred --------CceEEEEECCCCceEEEEEeCCCcCceEE-EEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007 280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYS-LAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT 350 (432)
Q Consensus 280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (432)
.. |++|| +++... +.. .+...+.. +.|+ |+ ++++++.++.++|| +.+++
T Consensus 236 ~~~~~~~~~~-l~~~d--~~~~~~-l~~-~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~-------------- 293 (347)
T 2gop_A 236 EKKYMSEHNK-LYIYD--GKEVMG-ILD-EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE-------------- 293 (347)
T ss_dssp SSSCCCSSCE-EEEEC--SSCEEE-SST-TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS--------------
T ss_pred ccCCccccce-EEEEC--CCceEe-ccc-cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc--------------
Confidence 35 88888 555432 322 24467776 9999 88 88899999999999 88443
Q ss_pred CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeE-EEEEec
Q 014007 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSF-YRCQFD 410 (432)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v-~iw~~~ 410 (432)
...+..+.+.|..++|+| ..+++++.++.. .||.++
T Consensus 294 ----------------------~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 294 ----------------------IKPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ----------------------EEEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred ----------------------eEEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 112334466788999999 677788877775 888887
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.82 E-value=2.5e-18 Score=170.37 Aligned_cols=289 Identities=11% Similarity=-0.009 Sum_probs=188.5
Q ss_pred cccCCCCCCCeEEEEEcCCCCEEEEE--cCC-cEEEEEcCCCeeEEEeecccCcceeEE---------EEeee--CCeEE
Q 014007 78 ESTSSSPPPTLLHISFNQDHGCFAAG--TDH-GFRIYNCDPFREIFRRDFERGGGIGVV---------EMLFR--CNILA 143 (432)
Q Consensus 78 ~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~ 143 (432)
......|...|..++|++++.+++.. ..+ ...||........ ..+. .+...+. .+.|+ ||+..
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~ 92 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAE--ESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGP 92 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCE--EESS-CTTCCBCCCGGGTCCCCEEEECCSSSSC
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCc--ceeC-CCCccccccccccCCccceeeeecCCCe
Confidence 34456688899999999887667766 333 4889986433332 3333 2333333 44454 77765
Q ss_pred -Eec-CCCCCCCCCCeEEEEeCC--C-CceeEEee-----cCCceEEEEEecCccEEEe---C----------CeEEEEE
Q 014007 144 -LVG-GGPDPQYPLNKVMIWDDH--Q-SRCIGELS-----FRSEVRSVKLRRDRIIVVL---E----------QKIFVYN 200 (432)
Q Consensus 144 -~~s-~~~d~~~~~~~v~iwd~~--~-~~~~~~~~-----~~~~v~~~~~~~~~~~~~~---d----------~~i~i~d 200 (432)
++. ...+ ..|+++++. . ++...... +...+..++|+|||+.++. + ..|++||
T Consensus 93 ~la~~~~~~-----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 93 LLVFTHFGD-----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp EEEEEBTTT-----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred EEEEEECCC-----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 443 3334 778888876 3 44332222 3557889999999998873 4 4799999
Q ss_pred cCC------CeeeEEEe-eccCCcceEEEecCCCcEEEEeecC-----CCCcEEEEEcc-CC---ceeeee-ccCCceeE
Q 014007 201 FAD------LKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYA-SK---RTKFIM-AHDSRIAC 263 (432)
Q Consensus 201 ~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~-~~---~~~~~~-~~~~~i~~ 263 (432)
+.+ ++. ..+. .+...+..++|+|||+.++++.... ....|++||+. ++ ....+. .|...+..
T Consensus 168 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~ 246 (662)
T 3azo_A 168 LDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ 246 (662)
T ss_dssp TTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred CCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence 987 543 3443 4445667789999999887654221 12479999998 45 444444 45788999
Q ss_pred EEEcCCCCEEEEEcCCC--ceEEEEECCCCceEEEEEeCCCcCc--------eEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 264 FALTQDGQLLATSSTKG--TLVRIFNTLDGTLLQEVRRGADRAE--------IYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 264 ~~~sp~~~~l~~~~~dg--~~i~vwd~~~~~~~~~~~~~~~~~~--------i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+.|+|||+++++++.++ . |++||+.+++....... +... +..++|+|+++++++++. +.++||.+.
T Consensus 247 ~~~spdg~l~~~~~~~~~~~-l~~~~~~~~~~~~l~~~--~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 247 AEWAPDGSLIVATDRTGWWN-LHRVDPATGAATQLCRR--EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp EEECTTSCEEEEECTTSSCE-EEEECTTTCCEEESSCC--SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred eEECCCCeEEEEECCCCCeE-EEEEECCCCceeecccc--cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 99999999888888887 5 77777767765443332 1111 567899999999999998 999999654
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEE-EEccCCCEEEEEecCCeEEEEEec
Q 014007 334 --VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIV-AFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 334 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
+++ +..+..|.+.+..+ +++.+.-.+++++.+....+|.++
T Consensus 323 ~~~~~------------------------------------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 323 PESGE------------------------------------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp TTTTE------------------------------------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred CCCCc------------------------------------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 332 22334455556655 443333344455667777788787
Q ss_pred CCCCC
Q 014007 411 PVNGG 415 (432)
Q Consensus 411 ~~~~~ 415 (432)
...++
T Consensus 367 ~~~g~ 371 (662)
T 3azo_A 367 TVTGR 371 (662)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 76554
No 167
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=7.4e-19 Score=175.89 Aligned_cols=237 Identities=13% Similarity=0.118 Sum_probs=167.5
Q ss_pred EEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCC----ceEEEEEecCccEEEe------------CCeEE
Q 014007 134 EMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRS----EVRSVKLRRDRIIVVL------------EQKIF 197 (432)
Q Consensus 134 ~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~------------d~~i~ 197 (432)
.+.|++++.+++++. | +.|++||+.+++....+.+.. .+.+++|+|||+++++ ++.|+
T Consensus 20 ~~~~s~dg~~~~~~~-d-----~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQSA-D-----NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEECT-T-----SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEcC-C-----CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 678999997776654 6 999999999998877776332 4899999999998872 37899
Q ss_pred EEEcCCCeee--EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCce------------
Q 014007 198 VYNFADLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI------------ 261 (432)
Q Consensus 198 i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i------------ 261 (432)
+||+.+++.+ ..+ ...+..++|+|||+.++++ .++.|++||+.++....+. ++...|
T Consensus 94 ~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~----~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYV----YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp EEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred EEECCCCccccceec---CcccccceECCCCCEEEEE----ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence 9999988763 222 2457789999999987654 3689999999886554432 222222
Q ss_pred -----eEEEEcCCCCEEEEEcCCC----------------------------------ceEEEEECCCCceE--EEEEe-
Q 014007 262 -----ACFALTQDGQLLATSSTKG----------------------------------TLVRIFNTLDGTLL--QEVRR- 299 (432)
Q Consensus 262 -----~~~~~sp~~~~l~~~~~dg----------------------------------~~i~vwd~~~~~~~--~~~~~- 299 (432)
.+++|+|||++|++++.|. . |++||+.+++.. ..+..
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~-l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVR-IFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEE-EEEEESSCHHHHCCEECCCC
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeE-EEEEECCCCCccceeEccCC
Confidence 4899999999999987652 5 889999887753 12211
Q ss_pred ---CCCcCceEEEEECCCCCEEEEEeCC----CeEEEEE----ecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceee
Q 014007 300 ---GADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFN----LKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFS 368 (432)
Q Consensus 300 ---~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (432)
..+...+..++||||++++++.... ..|++|| +.+++.....
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~--------------------------- 298 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ--------------------------- 298 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG---------------------------
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE---------------------------
Confidence 1255678999999998877775432 2488888 6655422100
Q ss_pred cceeeEEEEecCCCce-----EEEEccCCCEEEE--EecCCeEEEEEecCCCCC
Q 014007 369 SEWSVAQFRLVEGSPY-----IVAFGHQKNTVVI--LGMDGSFYRCQFDPVNGG 415 (432)
Q Consensus 369 ~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg~v~iw~~~~~~~~ 415 (432)
-.....|.+.+. .++|+|||+.|+. ...+|...||.++...++
T Consensus 299 ----~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 299 ----EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp ----EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred ----ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 000134555565 7899999996654 556787777777765543
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.81 E-value=1.3e-16 Score=141.02 Aligned_cols=241 Identities=13% Similarity=0.202 Sum_probs=175.5
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc---cCcceeEEEEee-eCCeEEEecCCC-CCCCCC
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLF-RCNILALVGGGP-DPQYPL 155 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~-~~~~~~~~s~~~-d~~~~~ 155 (432)
.++-..+.+++++++|+++++.. ++.|.+|+.+. +........ .++......+++ .+++.++++... +
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~----- 99 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT----- 99 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG-----
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC-----
Confidence 44567899999999999888776 55599999763 332111110 123356788888 477777776642 5
Q ss_pred CeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEee--ccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIET--IANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 228 (432)
+.|++|| .+++.+..+. +...+.++++++++.++++ ++.|++||. +++.+..+.. +......++++++++
T Consensus 100 ~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~- 176 (286)
T 1q7f_A 100 HQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQE- 176 (286)
T ss_dssp CEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSE-
T ss_pred CEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCC-
Confidence 8999999 6777777775 3467899999999987775 578999995 4666665542 233466789999875
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeecc--CCceeEEEEcCCCCEEEEEcCCC-ceEEEEECCCCceEEEEEeCCCcCc
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH--DSRIACFALTQDGQLLATSSTKG-TLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg-~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
++++ ...++.|.+||.....+..+..+ ...+..++++++|+++++...++ . |++|| .+++.+..+..+.....
T Consensus 177 l~v~--~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~-~~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 177 IFIS--DNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFT-QDGQLISALESKVKHAQ 252 (286)
T ss_dssp EEEE--EGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEEC-TTSCEEEEEEESSCCSC
T ss_pred EEEE--ECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEEC-CCCCEEEEEcccCCCCc
Confidence 4443 23578999999877655555433 36789999999999888888775 8 99999 46778888876433345
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+.+++++|+|+++++ +.+++|++|++....
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 889999999987776 579999999986643
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.80 E-value=1.5e-16 Score=140.52 Aligned_cols=235 Identities=12% Similarity=0.129 Sum_probs=171.9
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec-------CCceEEEEEe-cCccEEEe----CCe
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF-------RSEVRSVKLR-RDRIIVVL----EQK 195 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~-------~~~v~~~~~~-~~~~~~~~----d~~ 195 (432)
+-.....+++++++.++++...+ +.|.+||.. ++.+..+.. ...+.++++. +++.++++ ++.
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~-----~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNN-----HRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGG-----TEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred ccCCCceEEECCCCCEEEEECCC-----CEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 44567889999998888887666 899999976 666666542 2468899994 77776663 578
Q ss_pred EEEEEcCCCeeeEEEee-ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCE
Q 014007 196 IFVYNFADLKLLHQIET-IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQL 272 (432)
Q Consensus 196 i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~ 272 (432)
|++|| .+++.+..+.. .......++++++++ ++++. ..++.|.+||........+. .+...+..++++++|++
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVE--CKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEE--TTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEE--CCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 99999 56777666643 224566789999885 44432 35789999997765555543 34557899999999998
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC-eEEEEEecCCCCCCCCCCCCCCCCCC
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-TVHVFNLKVNSGSARSEPRSTSDPTL 351 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~ 351 (432)
+++...++. |++||. +++.+..+....+...+..++++++|+++++...++ .|.+||.. ++.
T Consensus 178 ~v~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~-------------- 240 (286)
T 1q7f_A 178 FISDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQL-------------- 240 (286)
T ss_dssp EEEEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCE--------------
T ss_pred EEEECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCE--------------
Confidence 888888888 999996 666666665322235789999999999888887776 99999954 331
Q ss_pred CCCCceeEeecccceeecceeeEEEEecC--CCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 352 PTSSLSFIKGVLPKYFSSEWSVAQFRLVE--GSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
+..+..+. ..+..++++|+|+++++ +.|+.|++|++..
T Consensus 241 ---------------------~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 241 ---------------------ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp ---------------------EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred ---------------------EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 22233332 24678999999987766 6799999999854
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=8.2e-18 Score=168.58 Aligned_cols=238 Identities=13% Similarity=0.104 Sum_probs=166.0
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCC-----ceEEEEEecCccEEEe--C---------
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRS-----EVRSVKLRRDRIIVVL--E--------- 193 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~-----~v~~~~~~~~~~~~~~--d--------- 193 (432)
....+.|++++.+++++ | +.|++||+.++++...+. +.. ....+.|+|||++++. +
T Consensus 18 ~~~~~~w~~dg~~~~~~--~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--E-----NNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCEEECSSSEEEEEE--T-----TEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred cccccEECCCCcEEEEc--C-----CcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 45578999999999986 6 999999999998877766 332 2245889999998873 2
Q ss_pred -CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCce---------
Q 014007 194 -QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRI--------- 261 (432)
Q Consensus 194 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i--------- 261 (432)
+.+.+||+.+++... +..+...+...+|+|||+.++++ .++.|++|++.++....+. ++...+
T Consensus 91 ~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 91 TASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred ceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence 578899999987643 55556678899999999988665 3689999999886554432 222222
Q ss_pred --------eEEEEcCCCCEEEEEcCCC------------------------------------ceEEEEECCC---Cc--
Q 014007 262 --------ACFALTQDGQLLATSSTKG------------------------------------TLVRIFNTLD---GT-- 292 (432)
Q Consensus 262 --------~~~~~sp~~~~l~~~~~dg------------------------------------~~i~vwd~~~---~~-- 292 (432)
..+.|||||++||.++.|. . |++||+.+ ++
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~-l~v~d~~~~~~~~~~ 244 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK-FFVVNTDSLSSVTNA 244 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE-EEEEETTSCCSSSCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE-EEEEECCCCCCCCcc
Confidence 3589999999999875321 4 88899988 73
Q ss_pred eEEEEEeC----CCcCceEEEEECCCCCEEEEEeC----CCeEEEEEecCCC----CCCCCCCCCCCCCCCCCCCceeEe
Q 014007 293 LLQEVRRG----ADRAEIYSLAFSSNAQWLAVSSD----KGTVHVFNLKVNS----GSARSEPRSTSDPTLPTSSLSFIK 360 (432)
Q Consensus 293 ~~~~~~~~----~~~~~i~~~~~s~~~~~l~~~~~----dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 360 (432)
....+... .+...+..++|+|||+.++.... +..|++||+.+++ +.....
T Consensus 245 ~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~------------------ 306 (740)
T 4a5s_A 245 TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQ------------------ 306 (740)
T ss_dssp CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGC------------------
T ss_pred eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEE------------------
Confidence 22333321 14567999999999997766542 3479999999876 211000
Q ss_pred ecccceeecceeeEEEEecCCCce-----EEEEccCCCEEE-EEe-cCCeEEEEEecCC
Q 014007 361 GVLPKYFSSEWSVAQFRLVEGSPY-----IVAFGHQKNTVV-ILG-MDGSFYRCQFDPV 412 (432)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~-~~~-~dg~v~iw~~~~~ 412 (432)
+ .-..|.+.|. .++|+|||+.|+ ..+ .+|.-.||-++..
T Consensus 307 ------------l-~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 307 ------------H-IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp ------------E-EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred ------------e-eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence 0 0123444444 689999999877 555 4666555555554
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=8.2e-17 Score=145.19 Aligned_cols=245 Identities=11% Similarity=0.093 Sum_probs=174.7
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCC-------------------CCCeEEEEeCCCCceeEEee--cCCceEEEEEecCc
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQY-------------------PLNKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDR 187 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~-------------------~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 187 (432)
-..+..+++++++.++++...+... ..+.|.+||..+++.+..+. +-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3567888888888887776654100 11479999998898877665 34578999999999
Q ss_pred cEEEe---CCeEEEEEcCCCe-eeEEEe---------eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee
Q 014007 188 IIVVL---EQKIFVYNFADLK-LLHQIE---------TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI 254 (432)
Q Consensus 188 ~~~~~---d~~i~i~d~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 254 (432)
.++++ ++.|++||..... .+..+. .+......++++|+...++++. +..++.|++||.+...+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d-~~~~~~I~~~~~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSD-GYCNSRIVQFSPSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEE-CSSCCEEEEECTTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEe-CCCCCeEEEEcCCCCEEEEe
Confidence 87775 5799999975432 445442 1222456799999555565543 22578999999666555554
Q ss_pred ecc----------CCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE--
Q 014007 255 MAH----------DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-- 321 (432)
Q Consensus 255 ~~~----------~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-- 321 (432)
... -.....++++|+ +.++++...++. |++||..+++.+..+....+...+..++|+| +..+.+.
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 322 234889999998 777778788888 9999998899998887554556789999999 4444333
Q ss_pred -----eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEE---EecCCCceEEEEccCCC
Q 014007 322 -----SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQF---RLVEGSPYIVAFGHQKN 393 (432)
Q Consensus 322 -----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~ 393 (432)
..+.+|++||..+++.+. .+ ..+...+..++++|+|+
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~-----------------------------------~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIID-----------------------------------VFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEE-----------------------------------EECCSSSCCSSEEEEEECTTSE
T ss_pred EEeccCCCcEEEEEEcCCCeEEE-----------------------------------EEcCCCCccCCeeEEEECCCCC
Confidence 334589999998876321 11 13345688999999998
Q ss_pred EEEEEecCCeEEEEEecC
Q 014007 394 TVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 394 ~l~~~~~dg~v~iw~~~~ 411 (432)
.+++...++.|++|+++.
T Consensus 305 lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEESSSCCEEEEEEEE
T ss_pred EEEEECCCCEEEEEeCCc
Confidence 888888899999999854
No 172
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.78 E-value=3.4e-16 Score=141.16 Aligned_cols=241 Identities=10% Similarity=0.051 Sum_probs=176.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCC-------------------------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDH-------------------------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC 139 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 139 (432)
-+.+.+|+++|+|+++++...+ .|.+||.++++.. ..+..++-.....+++++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL--QSSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--EEECTTTCSSEEEEEECT
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--eccCCCccCCceEEEECC
Confidence 4679999999999999888754 4999998777654 333223445778899999
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCc-eeEEee----------cCCceEEEEEec-CccEEEe----CCeEEEEEcCC
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----------FRSEVRSVKLRR-DRIIVVL----EQKIFVYNFAD 203 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~~~~~~----------~~~~v~~~~~~~-~~~~~~~----d~~i~i~d~~~ 203 (432)
++.++++...+ +.|++||..... .+..+. +-.....++++| ++.++++ ++.|++|| .+
T Consensus 101 ~g~l~v~d~~~-----~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~ 174 (329)
T 3fvz_A 101 DGNYWVTDVAL-----HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS 174 (329)
T ss_dssp TSCEEEEETTT-----TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence 99888888777 899999975432 455552 233688999999 7877774 45799999 56
Q ss_pred CeeeEEEeecc----------CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeee--eccCCceeEEEEcC--
Q 014007 204 LKLLHQIETIA----------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFI--MAHDSRIACFALTQ-- 268 (432)
Q Consensus 204 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~--~~~~~~i~~~~~sp-- 268 (432)
++.+..+.... .....+++++++..++++. ..++.|++||..+ ..+..+ ..+...+..++|+|
T Consensus 175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~ 252 (329)
T 3fvz_A 175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGF 252 (329)
T ss_dssp SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTE
T ss_pred CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCE
Confidence 77777664322 2256799999966776653 4678999999985 444444 24567788999999
Q ss_pred ----CCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 269 ----DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 269 ----~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+|+.+++...+.. |++||..+++.+..+... .+...+..++++|+|.++++...+++|++|++....
T Consensus 253 ~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 253 LFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp EEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 3333333334457 999999999999887421 234678999999999888888889999999997643
No 173
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.78 E-value=1.4e-15 Score=136.91 Aligned_cols=265 Identities=10% Similarity=0.067 Sum_probs=184.2
Q ss_pred CCcEEEEEcCCCeeEEEeecc-----cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceE
Q 014007 105 DHGFRIYNCDPFREIFRRDFE-----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR 179 (432)
Q Consensus 105 ~~~i~iw~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~ 179 (432)
+++|.+||.++++.. ..+. .........+.+..+..+++.. .+ +.|.+||..+++.+.++.......
T Consensus 16 ~~~l~~~d~~t~~~~--~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~-~~-----~~v~viD~~t~~~~~~i~~~~~p~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVE--NEVFYRANGFKLGDVAQSMVIRDGIGWIVVN-NS-----HVIFAIDINTFKEVGRITGFTSPR 87 (328)
T ss_dssp CBEEEEEETTTTEEE--CSHHHHHHSSCCBSCEEEEEEETTEEEEEEG-GG-----TEEEEEETTTCCEEEEEECCSSEE
T ss_pred CceEEEEECCCCEEh--hhhHhhhcCcccCccceEEEEECCEEEEEEc-CC-----CEEEEEECcccEEEEEcCCCCCCc
Confidence 345999999887654 2221 0112345667777666666655 34 899999999999999888777889
Q ss_pred EEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccC-----CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 180 SVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIAN-----PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 180 ~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
.+++++++++.++ ++.|.+||+.+++....+..... ....+++ +++.++++..+ .++.|.++|..+..+
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~-~~~~v~viD~~t~~~ 164 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWS-YQNRILKIDTETDKV 164 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECT-TCCEEEEEETTTTEE
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCC-CCCEEEEEECCCCeE
Confidence 9999988865554 68999999999988877765440 2335666 56666665321 478999999998655
Q ss_pred eeeeccCCceeEEEEcCCCCEEEEEcCC----------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 252 KFIMAHDSRIACFALTQDGQLLATSSTK----------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d----------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
............++++|+|++++++..+ +. |.++|..+++....+... .......++|+|++++|+++
T Consensus 165 ~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 165 VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFK-LGDWPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECC-TTCCCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecC-CCCCceeEEEecCCCEEEEE
Confidence 4333334456789999999977776654 67 999999999988777642 12368999999999998887
Q ss_pred eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE---
Q 014007 322 SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL--- 398 (432)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--- 398 (432)
.. .|.+||..+++..... . +..+......++++|++..|.++
T Consensus 243 ~~--~v~~~d~~t~~~~~~~--------------------~-------------~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 243 NN--DIWRMPVEADRVPVRP--------------------F-------------LEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp SS--SEEEEETTCSSCCSSC--------------------S-------------BCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred cc--EEEEEECCCCceeeee--------------------e-------------ecCCCCceEEEEEcCCCCeEEEEccc
Confidence 54 8999999887632100 0 00012347789999955545444
Q ss_pred --ecCCeEEEEEecCCCCCcceEe
Q 014007 399 --GMDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 399 --~~dg~v~iw~~~~~~~~~~~~~ 420 (432)
..+|.|.+|+. . |+.+..+
T Consensus 288 ~y~~~~~V~v~d~--~-g~~~~~i 308 (328)
T 3dsm_A 288 DYQQQGIVYRYSP--Q-GKLIDEF 308 (328)
T ss_dssp TSSSEEEEEEECT--T-CCEEEEE
T ss_pred ccccCCEEEEECC--C-CCEEEEE
Confidence 46888998765 3 5544443
No 174
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.78 E-value=3.5e-17 Score=151.24 Aligned_cols=244 Identities=13% Similarity=0.065 Sum_probs=162.4
Q ss_pred ccCCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEEcCCCeeEEEeecccCcceeE--EEEeeeCCeEEEec---------
Q 014007 79 STSSSPPPTLLHISFNQDHGCFAAGTDH-GFRIYNCDPFREIFRRDFERGGGIGV--VEMLFRCNILALVG--------- 146 (432)
Q Consensus 79 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~s--------- 146 (432)
.+...+...+..+.|+|||+.|+.+..+ .|++||+.+++....... +...+ ....+++++..++.
T Consensus 74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~ 150 (388)
T 3pe7_A 74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQV---PAEWVGYGTWVANSDCTKLVGIEIRREDWV 150 (388)
T ss_dssp ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---CTTEEEEEEEEECTTSSEEEEEEEEGGGCC
T ss_pred EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeec---hhhcccccceeECCCCCeeccccccCcccc
Confidence 3444455555567899999999988854 599999998876644333 22223 23345788777762
Q ss_pred -------------CCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEec-CccEEEe--C-------CeEEEEEcCC
Q 014007 147 -------------GGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRR-DRIIVVL--E-------QKIFVYNFAD 203 (432)
Q Consensus 147 -------------~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~--d-------~~i~i~d~~~ 203 (432)
...+ ..|++||+.+++......+...+..+.|+| |+..++. + ..|.++|+..
T Consensus 151 ~~~~~~~~~~~~~~~~~-----~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 151 PLTDWKKFHEFYFTKPC-----CRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp CCCSHHHHHHHGGGCCC-----EEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred cccccchhhhhhccCCc-----ceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 2333 789999999987666666778899999999 9987762 2 2788888765
Q ss_pred CeeeEEEeecc--CCcceEEEecCCCcEEEEeecCCC--CcEEEEEccCCceeeeeccCCc------eeEEEEcCCCCEE
Q 014007 204 LKLLHQIETIA--NPKGLCAVSQGVGSLVLVCPGLQK--GQVRVEHYASKRTKFIMAHDSR------IACFALTQDGQLL 273 (432)
Q Consensus 204 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d--~~i~i~d~~~~~~~~~~~~~~~------i~~~~~sp~~~~l 273 (432)
++. ..+..+. ..+....|+|+|+.+++++..... ..|++||+.++....+...... ...+.|+|||+.|
T Consensus 226 ~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l 304 (388)
T 3pe7_A 226 TNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDA 304 (388)
T ss_dssp CCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC
T ss_pred Cce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcc
Confidence 443 3333333 235568899999988665432122 2499999998765544332221 1223799999988
Q ss_pred EEE---------cCCCceEEEEECCCCceEEEEEeCCCcC-----------ceEEEEECCCCCEEEEEe-CCCeEEEEEe
Q 014007 274 ATS---------STKGTLVRIFNTLDGTLLQEVRRGADRA-----------EIYSLAFSSNAQWLAVSS-DKGTVHVFNL 332 (432)
Q Consensus 274 ~~~---------~~dg~~i~vwd~~~~~~~~~~~~~~~~~-----------~i~~~~~s~~~~~l~~~~-~dg~i~iwd~ 332 (432)
+.. ..+.. |++||+.+++.. .+..+ .. .+..++|+|||+.|+..+ .+|...||.+
T Consensus 305 ~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~l~~~--~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 305 PVDVQDDSGYKIENDPF-LYVFNMKNGTQH-RVARH--DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp ------------CCCCE-EEEEETTTTEEE-EEEEC--CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred eeEeeeccccccCCCCE-EEEEeccCCceE-Eeccc--cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 754 44557 999999887664 44432 23 478899999999888766 5677777766
Q ss_pred cCC
Q 014007 333 KVN 335 (432)
Q Consensus 333 ~~~ 335 (432)
+-.
T Consensus 381 ~l~ 383 (388)
T 3pe7_A 381 TLP 383 (388)
T ss_dssp ECC
T ss_pred ECC
Confidence 543
No 175
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=4.6e-17 Score=148.55 Aligned_cols=230 Identities=12% Similarity=0.093 Sum_probs=158.6
Q ss_pred EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccC---cceeEEEEeeeCCeEEEecCC--CCCCC
Q 014007 90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG---GGIGVVEMLFRCNILALVGGG--PDPQY 153 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~s~~--~d~~~ 153 (432)
.++|+|||++|+++. ++.|.+||..+.+......+... +......+.+++++.+++.++ .+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~--- 130 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPA--- 130 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSS---
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCC---
Confidence 899999999988875 23499999987776533332101 123456788999998777654 24
Q ss_pred CCCeEEEEeCCCCceeEE-eecCCceEEEEEecCc--cEEE--eCCeEEEEEcCC-CeeeEEE------eeccCCcceEE
Q 014007 154 PLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-LKLLHQI------ETIANPKGLCA 221 (432)
Q Consensus 154 ~~~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-~~~~~~~------~~~~~~~~~~~ 221 (432)
+.|.+||+.+++.+.. +...+. ..+.+.|++ .+++ .||.+.+|++.. ++..... .....++ .+.
T Consensus 131 --~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~ 206 (361)
T 2oiz_A 131 --TSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIA 206 (361)
T ss_dssp --EEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSC
T ss_pred --CeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEE
Confidence 7999999999998888 664332 335667765 2333 288888888865 5544221 1112222 344
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCceeeeec---------c----CCceeEEEEcCCCCEEEEEcC----------
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA---------H----DSRIACFALTQDGQLLATSST---------- 278 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---------~----~~~i~~~~~sp~~~~l~~~~~---------- 278 (432)
+++++..+++.. .++.|.++|+.......... + ......++|+|+++.++++..
T Consensus 207 ~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~ 283 (361)
T 2oiz_A 207 PALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKF 283 (361)
T ss_dssp CEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTC
T ss_pred ecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccC
Confidence 567777666554 57899999987643322110 0 111223789999888877643
Q ss_pred -CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 279 -KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 279 -dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
.+. |.+||+.+++.+.++..+ . +.+++|+|||++|++++. +.|.+||..++
T Consensus 284 ~~~~-v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 284 PAAE-IWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCSE-EEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred CCce-EEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 346 999999999999999854 3 899999999999998886 99999999998
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.77 E-value=3.1e-16 Score=141.75 Aligned_cols=268 Identities=14% Similarity=0.088 Sum_probs=180.6
Q ss_pred CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
..|.++.|++++..++... ++.++.|. .+.. ..+. .+...+..++|++++.+++++..+ +.|.+||..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~-~~~~~~~~~~~~~~g~l~~~~~~~-----~~i~~~d~~ 74 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW--LEIS-KKGLQLEGLNFDRQGQLFLLDVFE-----GNIFKINPE 74 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE--EEEE-SSCCCEEEEEECTTSCEEEEETTT-----CEEEEECTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---ccee--EEEe-ccCccccCcEECCCCCEEEEECCC-----CEEEEEeCC
Confidence 4577888999887665544 55688883 2222 2332 345566888999999888777766 899999998
Q ss_pred CCceeEEee-cCCceEEEEEecCccEEEe---C----CeEEEEEcCCCeeeEEEe--eccCCcceEEEecCCCcEEEEee
Q 014007 165 QSRCIGELS-FRSEVRSVKLRRDRIIVVL---E----QKIFVYNFADLKLLHQIE--TIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d----~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
+++...... +...+.++++++++.+++. + +.|.+||..+++....+. .....+..++++++++ ++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 153 (333)
T 2dg1_A 75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDF 153 (333)
T ss_dssp TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEEC
T ss_pred CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC-EEEEec
Confidence 887665543 6678999999999987664 2 489999988766543332 1234566789999875 444431
Q ss_pred cC----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEE-EEcCCCceEEEEECCC-CceEEEE-----EeCCCc
Q 014007 235 GL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLD-GTLLQEV-----RRGADR 303 (432)
Q Consensus 235 g~----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~-~~~~~~~-----~~~~~~ 303 (432)
.. ..+.|..+|..++....+..+...+..++|+|+|++|+ +.+.++. |++||+.+ ++.+..+ ......
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCC
Confidence 10 13556666666555555544445688999999998654 4556778 99999864 4433222 111111
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCC--
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEG-- 381 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 381 (432)
..+..++++++|+++++...++.|.+||.+ ++. +..+..+..
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~-----------------------------------~~~~~~~~~~~ 276 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYP-----------------------------------IGQILIPGRDE 276 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCE-----------------------------------EEEEECTTGGG
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCE-----------------------------------EEEEEcCCCcc
Confidence 367889999999988887788999999984 331 222333322
Q ss_pred ----CceEEEEccCCCEEEEEecCC
Q 014007 382 ----SPYIVAFGHQKNTVVILGMDG 402 (432)
Q Consensus 382 ----~v~~~~~s~~~~~l~~~~~dg 402 (432)
.+..++|+||++.|++++.+|
T Consensus 277 g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 277 GHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TCSCBCCEEEECTTSCEEEEEEECG
T ss_pred ccccCcceEEECCCCCEEEEEeCcc
Confidence 588999999988887776663
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.1e-16 Score=146.14 Aligned_cols=269 Identities=11% Similarity=0.045 Sum_probs=181.3
Q ss_pred CCCEEEEEc-------CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCCeE
Q 014007 96 DHGCFAAGT-------DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKV 158 (432)
Q Consensus 96 ~~~~l~~~~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~v 158 (432)
+++++.+.. ++.|.+||..+++.. ..+. .+... .+++++++..++.++ .+ +.|
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~--~~i~-~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~-----~~v 83 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL--GMVP-TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRS-----DVV 83 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE--EEEE-CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEE-----EEE
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE--EEec-CCCCC--ceEECCCCCEEEEEEecccccccCCCC-----CEE
Confidence 555555542 456999998887765 4454 23333 889999987776654 24 679
Q ss_pred EEEeCCCCceeEEee-c------CCceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEE-EeeccCCcceEEEecC
Q 014007 159 MIWDDHQSRCIGELS-F------RSEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQG 225 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-~------~~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~ 225 (432)
.+||..+++.+.++. . ......++++|||++++. ++.|.+||+.+++.+.. +... . ...+.+.|+
T Consensus 84 ~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~ 161 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPN 161 (361)
T ss_dssp EEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTT
T ss_pred EEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCC
Confidence 999999999888876 2 245778999999998873 46899999999988776 4321 1 122557787
Q ss_pred CCcEEEEeecCCCCcEEEEEccC-Ccee-------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce--EE
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYAS-KRTK-------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL--LQ 295 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~-~~~~-------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~--~~ 295 (432)
+...+++. +.||.+.+|++.. +... .+.....++ .+.+++++..++..+.++. |.++|+...+. ..
T Consensus 162 ~~~~~~~~--~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~-v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 162 RPRSFMTI--CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGN-VYSADFSGDEVKVDG 237 (361)
T ss_dssp SSSEEEEE--ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSE-EEEEECSSSSCEEEE
T ss_pred CCeeEEEE--CCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCe-EEEEEecCCCceecc
Confidence 76555543 3588898888765 3322 112222222 3344677878888888898 99999876542 22
Q ss_pred EEEeCC----C----cCceEEEEECCCCCEEEEEeC-----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCc
Q 014007 296 EVRRGA----D----RAEIYSLAFSSNAQWLAVSSD-----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSL 356 (432)
Q Consensus 296 ~~~~~~----~----~~~i~~~~~s~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (432)
.+.... . ......++|+|+++.++++.. .+.|.+||+.+.+.
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~------------------- 298 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR------------------- 298 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-------------------
T ss_pred cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-------------------
Confidence 222100 0 011123789999888777643 35899999988762
Q ss_pred eeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCC--CcceEe
Q 014007 357 SFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG--GEMTQL 420 (432)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~--~~~~~~ 420 (432)
+.++..+. +..++|+|||++|++++. +.|.+|+. .++ +.+..+
T Consensus 299 ----------------v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~--~t~~l~~~~~i 343 (361)
T 2oiz_A 299 ----------------VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI--SQPEPKLLRTI 343 (361)
T ss_dssp ----------------EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEEC--SSSSCEEEEEE
T ss_pred ----------------EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEEC--CCCcceeeEEe
Confidence 44566665 899999999999998887 99999865 445 544443
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.77 E-value=3.6e-17 Score=162.07 Aligned_cols=252 Identities=9% Similarity=0.030 Sum_probs=171.7
Q ss_pred CcceeEEEEeeeCCeEEEecC--CCCCCCCCCeEEEEeCCCCceeEEee-cCCceE---------EEEEe--cCccE-EE
Q 014007 127 GGGIGVVEMLFRCNILALVGG--GPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVR---------SVKLR--RDRII-VV 191 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~s~--~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~---------~~~~~--~~~~~-~~ 191 (432)
+|...+..+.++++..+++.. +.+ +...||....+.....+. +...+. ...|+ |||.. ++
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEA-----GRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTT-----TEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred hcCCccceeEEcCCeEEEEecCcccC-----CcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 467788999999999998887 656 889999865444445554 555555 56666 99887 66
Q ss_pred -e---CCeEEEEEcC--C-CeeeEEEee-----ccCCcceEEEecCCCcEEEEeec-------CCCCcEEEEEccC----
Q 014007 192 -L---EQKIFVYNFA--D-LKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPG-------LQKGQVRVEHYAS---- 248 (432)
Q Consensus 192 -~---d~~i~i~d~~--~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g-------~~d~~i~i~d~~~---- 248 (432)
+ +..|+++++. . ++ ...+.. +...+..++|+|||+.++++... .....|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 3 3567777765 2 33 344443 34456789999999987765421 1115899999988
Q ss_pred --Cceeeee-ccCCceeEEEEcCCCCEEEEEcCCC--------ceEEEEECC-CCc--eEEEEEeCCCcCceEEEEECCC
Q 014007 249 --KRTKFIM-AHDSRIACFALTQDGQLLATSSTKG--------TLVRIFNTL-DGT--LLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 249 --~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg--------~~i~vwd~~-~~~--~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
+....+. .+...+..++|+|||++|+.++.++ . |++||+. +++ ....+..+ +...+..+.|+||
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~-i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spd 252 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE-LKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPD 252 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE-EEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTT
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE-EEEEEECCCCcccccEEeCCC-CCceEcceEECCC
Confidence 6777776 6777888999999999999877553 5 9999998 562 33334332 3578999999999
Q ss_pred CCEEEEEeCCC--eEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCC
Q 014007 315 AQWLAVSSDKG--TVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQK 392 (432)
Q Consensus 315 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 392 (432)
|++++++..++ .|++||+.+++.......+. ......| .-.+..++|++++
T Consensus 253 g~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~-------------------~~~~p~w--------~~~~~~~~~~~~~ 305 (662)
T 3azo_A 253 GSLIVATDRTGWWNLHRVDPATGAATQLCRREE-------------------EFAGPLW--------TPGMRWFAPLANG 305 (662)
T ss_dssp SCEEEEECTTSSCEEEEECTTTCCEEESSCCSS-------------------BSSCCCC--------STTCCSEEECTTS
T ss_pred CeEEEEECCCCCeEEEEEECCCCceeecccccc-------------------cccCccc--------cccCceEeEeCCC
Confidence 99888888888 56666654544211100000 0000000 0014568999999
Q ss_pred CEEEEEecCCeEEEEEecCCCC
Q 014007 393 NTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 393 ~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
+++++++. |.++||.++...+
T Consensus 306 ~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 306 LIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp CEEEEEBS-SSCEEEEEETTTT
T ss_pred EEEEEEEc-CccEEEEEECCCC
Confidence 99999999 9999998887644
No 179
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.76 E-value=2.3e-15 Score=144.34 Aligned_cols=318 Identities=11% Similarity=0.071 Sum_probs=207.4
Q ss_pred CCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC--CCceeEE
Q 014007 95 QDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH--QSRCIGE 171 (432)
Q Consensus 95 ~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~--~~~~~~~ 171 (432)
+.+.++++.. ++.|.++|.++++.. ..+. .......+.+++++.+++.++.+ +.|.+||+. +++.+.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~--~~i~--~g~~p~~v~~SpDGr~lyv~~~d-----g~V~viD~~~~t~~~v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIK--TVLD--TGYAVHISRLSASGRYLFVIGRD-----GKVNMIDLWMKEPTTVAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEE--EEEE--CSSCEEEEEECTTSCEEEEEETT-----SEEEEEETTSSSCCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEE--EEEe--CCCCccceEECCCCCEEEEEcCC-----CeEEEEECCCCCCcEeEE
Confidence 4344455555 445999999888766 3443 23345588999999888877777 999999996 7888888
Q ss_pred eecCCceEEEEEe----cCccEEEe----CCeEEEEEcCCCeeeEEEeecc----------C-CcceEEEecCCCcEEEE
Q 014007 172 LSFRSEVRSVKLR----RDRIIVVL----EQKIFVYNFADLKLLHQIETIA----------N-PKGLCAVSQGVGSLVLV 232 (432)
Q Consensus 172 ~~~~~~v~~~~~~----~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~ 232 (432)
+........++|+ |||++++. ++.|.++|..+.+.++.+.... . .+..+..++++..+++.
T Consensus 236 i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 236 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred EecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 8866677899999 69988773 7899999999999888775421 1 34567777777655544
Q ss_pred eecCCCCcEEEEEccCCce-e-eeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEe-CC--CcCce
Q 014007 233 CPGLQKGQVRVEHYASKRT-K-FIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRR-GA--DRAEI 306 (432)
Q Consensus 233 ~~g~~d~~i~i~d~~~~~~-~-~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~-~~--~~~~i 306 (432)
. ...|.|.++|...... . ...........+.|+|+|++|+++. .++. |.++|+.+++.+..+.. +. |.+.-
T Consensus 316 ~--~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~-V~ViD~~t~kl~~~i~vgg~~Phpg~g 392 (567)
T 1qks_A 316 V--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK-LVVIDTKEGKLVAIEDTGGQTPHPGRG 392 (567)
T ss_dssp E--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred e--cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCe-EEEEECCCCcEEEEEeccCcCCCCccc
Confidence 3 4789999999876321 1 1123445677899999999887665 4566 99999999998888875 32 32222
Q ss_pred EEEEECCCCCEE-EEEe-CCCeEEEEEecC-------CCCCCCCCCCCCC---CCCCCCCCceeEeec-cc---------
Q 014007 307 YSLAFSSNAQWL-AVSS-DKGTVHVFNLKV-------NSGSARSEPRSTS---DPTLPTSSLSFIKGV-LP--------- 364 (432)
Q Consensus 307 ~~~~~s~~~~~l-~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~--------- 364 (432)
..+ ++|++..+ +++. .++.|.++|..+ .+.++.+...... +...+++...+.... -|
T Consensus 393 ~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~ 471 (567)
T 1qks_A 393 ANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVA 471 (567)
T ss_dssp EEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEE
T ss_pred eee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEE
Confidence 222 57875544 4443 468999999987 3333333322111 113444443333221 11
Q ss_pred ceeecce-------eeEEEEe--------cCCCceEEEEccCCCEEEEEec-----CCeEEEEEecCCCCCcceEeeecc
Q 014007 365 KYFSSEW-------SVAQFRL--------VEGSPYIVAFGHQKNTVVILGM-----DGSFYRCQFDPVNGGEMTQLEYNN 424 (432)
Q Consensus 365 ~~~~~~~-------~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~ 424 (432)
.+..... .+..+.. ....+..+.|+++|++|.++.. ++.|.| +|..+++....++..+
T Consensus 472 v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v--~D~~t~~~~~~i~~~~ 549 (567)
T 1qks_A 472 VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVV--VDDKTLELKHVIKDER 549 (567)
T ss_dssp EEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEE--EETTTTEEEEEECCTT
T ss_pred EEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEE--EECCCceEEEEeCCCc
Confidence 0000111 1122221 1246789999999998887643 789999 5567777777777555
Q ss_pred cCC
Q 014007 425 FLK 427 (432)
Q Consensus 425 ~~~ 427 (432)
+..
T Consensus 550 ~~~ 552 (567)
T 1qks_A 550 LVT 552 (567)
T ss_dssp CCS
T ss_pred ccC
Confidence 443
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.75 E-value=3.4e-15 Score=132.47 Aligned_cols=233 Identities=10% Similarity=0.051 Sum_probs=166.5
Q ss_pred cceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 128 GGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
+......++|++++. +++++..+ +.|..||..++ ...+. +...+.++++++++.++++ ++.|.+||..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~-----~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQ-----NRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGG-----TEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred CCccccCCeEeCCCCEEEEEeCCC-----CEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 344567889999986 66666666 89999998877 55555 6778999999999988774 4689999997
Q ss_pred CCeeeEEEeec----cCCcceEEEecCCCcEEEEee--cC-------------CCCcEEEEEccCCceeeeeccCCceeE
Q 014007 203 DLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GL-------------QKGQVRVEHYASKRTKFIMAHDSRIAC 263 (432)
Q Consensus 203 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--g~-------------~d~~i~i~d~~~~~~~~~~~~~~~i~~ 263 (432)
+++........ ...+..++++++|+ ++++.. |. ..+.|..++.. +....+..+......
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 87654333221 12345789999886 333211 11 12456666655 555566667777899
Q ss_pred EEEcCCCCEEEEEcCCCceEEEEECC-CCce---EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCC
Q 014007 264 FALTQDGQLLATSSTKGTLVRIFNTL-DGTL---LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 264 ~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 339 (432)
++|+|+|+.|++.+.++. |++||+. +++. ...+ . .+...+..++++++|+++++. ++.|.+||.. ++.
T Consensus 177 i~~s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~-- 248 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDE-- 248 (296)
T ss_dssp EEECTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCE--
T ss_pred EEECCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCE--
Confidence 999999999977778888 9999987 5655 3344 2 244567889999999977666 7889999986 331
Q ss_pred CCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEE-ccCCCEEEEEecCCeEEEEEecCCCC
Q 014007 340 RSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAF-GHQKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
+..+..+.+ +.+++| +|+++.|++++.+| +|.+++.++
T Consensus 249 ---------------------------------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~~~ 287 (296)
T 3e5z_A 249 ---------------------------------LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETNVR 287 (296)
T ss_dssp ---------------------------------EEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECSCC
T ss_pred ---------------------------------EEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcccc
Confidence 345666777 899999 58999999998874 555666544
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=1.3e-16 Score=147.68 Aligned_cols=201 Identities=7% Similarity=-0.043 Sum_probs=134.2
Q ss_pred EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCce-EEEEEecCccEEEe---CCeEEEEEcCCCeee
Q 014007 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEV-RSVKLRRDRIIVVL---EQKIFVYNFADLKLL 207 (432)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~ 207 (432)
+..+.|+|++..++...... ....|.+||+.+++......+...+ ..+.|+|||+.++. ++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~--g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD--GNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT--SSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecC--CCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 56678999998765442210 0147999999888765444443333 34789999998863 668999999887765
Q ss_pred EEEeeccCCcce-------------------EEEecCCCcEEEEe--ecCCCCcEEEEEccCCceeeeeccCCceeEEEE
Q 014007 208 HQIETIANPKGL-------------------CAVSQGVGSLVLVC--PGLQKGQVRVEHYASKRTKFIMAHDSRIACFAL 266 (432)
Q Consensus 208 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~--~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 266 (432)
.....+...... +.++|+++.+++.. .+..+..|.+||+.++....+..+...+..+.|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 544433221111 24566666544321 013567899999998877777777888999999
Q ss_pred cC-CCCEEEEEcCC------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecC
Q 014007 267 TQ-DGQLLATSSTK------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKV 334 (432)
Q Consensus 267 sp-~~~~l~~~~~d------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~ 334 (432)
+| +++.|+..+.+ .. |++||+..++... +..+.....+..++|+|||++|+.++.+ +.|++||+.+
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~-l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDAR-MWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET 273 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCC-CEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred CCCCCCEEEEEecCCCCCCCce-EEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence 99 78877765543 35 8999987665432 2211112358889999999988777543 4599999987
Q ss_pred CC
Q 014007 335 NS 336 (432)
Q Consensus 335 ~~ 336 (432)
++
T Consensus 274 g~ 275 (396)
T 3c5m_A 274 LE 275 (396)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 182
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.72 E-value=3.1e-15 Score=149.19 Aligned_cols=280 Identities=9% Similarity=-0.020 Sum_probs=180.5
Q ss_pred CCCCEEEEEc-CCc---EEEEEcC--CCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007 95 QDHGCFAAGT-DHG---FRIYNCD--PFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 95 ~~~~~l~~~~-~~~---i~iw~~~--~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~ 165 (432)
|+|++++... +.+ -.||..+ .++..... .+..++...+..+.|+|++..++.+..+.......|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 8888776654 222 2455543 33322111 2222344578889999999887754322000003899999999
Q ss_pred CceeEEeecCCceEEEEEecCccEEEe---CCe----------------EEEEEcCCCeee--EEEee--ccCCcceEEE
Q 014007 166 SRCIGELSFRSEVRSVKLRRDRIIVVL---EQK----------------IFVYNFADLKLL--HQIET--IANPKGLCAV 222 (432)
Q Consensus 166 ~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~----------------i~i~d~~~~~~~--~~~~~--~~~~~~~~~~ 222 (432)
++.+........+..++|+|||+.++. ++. |++|++.+++.. ..+.. +......+.|
T Consensus 161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~ 240 (710)
T 2xdw_A 161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL 240 (710)
T ss_dssp TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence 987664333334778999999987773 333 999999876521 22222 2333557899
Q ss_pred ecCCCcEEEEeecCC--CCcEEEEEccC------C--ceeeeeccCCceeEEEEcCCCCEEEEEcC----CCceEEEEEC
Q 014007 223 SQGVGSLVLVCPGLQ--KGQVRVEHYAS------K--RTKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNT 288 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~--d~~i~i~d~~~------~--~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----dg~~i~vwd~ 288 (432)
+|+|+.+++...... +..|.+||+.+ + ....+..+...+.. .|+|+|+.|+..+. ++. |.+||+
T Consensus 241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~-l~~~d~ 318 (710)
T 2xdw_A 241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYR-LINIDF 318 (710)
T ss_dssp CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCE-EEEEET
T ss_pred cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCE-EEEEeC
Confidence 999998877653222 67899999986 4 46667777666655 48899988776654 236 999999
Q ss_pred CCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe--EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 289 LDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT--VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 289 ~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
.+++ ....+..+.....+..++|++++.++++...++. |++||+.+++.
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~--------------------------- 371 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGAL--------------------------- 371 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCE---------------------------
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCE---------------------------
Confidence 8774 2344544322236888999988888888888885 45556545541
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEe----cCCeEEEEEecC
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG----MDGSFYRCQFDP 411 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~ 411 (432)
...+..+.+.|..++++|+++.|+... ..+.|++|++..
T Consensus 372 --------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 372 --------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp --------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred --------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 223445666788899999988766432 246788877643
No 183
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.72 E-value=1.4e-15 Score=151.26 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=178.2
Q ss_pred cCCCCEEEEEc-CC---cEEEEEc--CCCeeEEEee---cccCcceeEEEEeeeCCeEEEe-----cCCCCCCCCCCeEE
Q 014007 94 NQDHGCFAAGT-DH---GFRIYNC--DPFREIFRRD---FERGGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVM 159 (432)
Q Consensus 94 s~~~~~l~~~~-~~---~i~iw~~--~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~v~ 159 (432)
+|+|++++... +. .-.||.. ..++...... +..+|...+..+.|+|++..++ +|+.+ ..|+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~-----~~i~ 150 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE-----AVLH 150 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC-----CEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce-----EEEE
Confidence 37888877654 32 2345544 3333222121 1124556788999999999988 67666 8999
Q ss_pred EEeCCCCcee-EEeecCCceEEEEEecCccEEEe---CCe-------------EEEEEcCCCe----eeEEEeeccCCcc
Q 014007 160 IWDDHQSRCI-GELSFRSEVRSVKLRRDRIIVVL---EQK-------------IFVYNFADLK----LLHQIETIANPKG 218 (432)
Q Consensus 160 iwd~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~---d~~-------------i~i~d~~~~~----~~~~~~~~~~~~~ 218 (432)
+||+.+++.+ ...........++|+|||+.++. +.. |++|++.++. ++.....+...+.
T Consensus 151 v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~ 230 (695)
T 2bkl_A 151 VIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL 230 (695)
T ss_dssp EEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE
T ss_pred EEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE
Confidence 9999998865 21111122268999999987773 443 9999998765 2222222334566
Q ss_pred eEEEecCCCcEEEEeecC-CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc---CCCceEEEEECCCCce-
Q 014007 219 LCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS---TKGTLVRIFNTLDGTL- 293 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~~i~vwd~~~~~~- 293 (432)
.+.++|+|+.+++..... ....|.+++..++....+..+...+....+ ++|.+++... .++. |.+||+.+++.
T Consensus 231 ~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~-l~~~d~~~~~~~ 308 (695)
T 2bkl_A 231 QSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQR-VFEVDPAKPARA 308 (695)
T ss_dssp EEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCE-EEEEBTTBCSGG
T ss_pred EEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCE-EEEEeCCCCCcc
Confidence 889999999887665221 123677776666667777777777777777 5666444443 2467 99999987753
Q ss_pred -EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecccceeecce
Q 014007 294 -LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEW 371 (432)
Q Consensus 294 -~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
...+..+.....+..++|+ ++.++++...|+..+||.+.. ++.
T Consensus 309 ~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~---------------------------------- 353 (695)
T 2bkl_A 309 SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKP---------------------------------- 353 (695)
T ss_dssp GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCE----------------------------------
T ss_pred CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCe----------------------------------
Confidence 2344433224568889998 778888888999988887762 221
Q ss_pred eeEEEEec-CCCceEEEEccCCCEEEEEe----cCCeEEEEEecC
Q 014007 372 SVAQFRLV-EGSPYIVAFGHQKNTVVILG----MDGSFYRCQFDP 411 (432)
Q Consensus 372 ~~~~~~~~-~~~v~~~~~s~~~~~l~~~~----~dg~v~iw~~~~ 411 (432)
...+..+ .+.|..++++|+++.|+... ..+.|++|+++.
T Consensus 354 -~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 354 -VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp -EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred -eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 1122333 45577788999998777333 357888887743
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.71 E-value=1.3e-14 Score=126.80 Aligned_cols=185 Identities=20% Similarity=0.181 Sum_probs=144.7
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC-CceEEEEEecCccEEEe-CCeEEEEEcCCCeeeEEEeecc-C
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR-SEVRSVKLRRDRIIVVL-EQKIFVYNFADLKLLHQIETIA-N 215 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~ 215 (432)
.+..+++++.+ +.|++||.++|+.+.++. +. ..+.++.++|+|+++++ ++.|+.||. +++.+..+.... .
T Consensus 4 ~~~~lv~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGW-----NKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTC-----SEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCC-----CEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 35667777777 999999998999999998 33 47899999999998885 778999998 899988887642 3
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee------ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM------AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~------~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
.+..+.+.++|+.++..+ + .++.|..+|.+.+.+..+. .+......+++.++|++|++...++. |..||..
T Consensus 78 ~~~~~~~~~dG~~lv~~~-~-~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~-v~~~d~~ 154 (276)
T 3no2_A 78 EMQTARILPDGNALVAWC-G-HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSE-VREIAPN 154 (276)
T ss_dssp EEEEEEECTTSCEEEEEE-S-TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTE-EEEECTT
T ss_pred cccccEECCCCCEEEEec-C-CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCE-EEEECCC
Confidence 566788889987554322 2 2667777776555554443 12234556778999999999999999 9999987
Q ss_pred CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
|+.+.++... ..+.++.+.++|+.++++..+++|..+|..+++.
T Consensus 155 -G~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 155 -GQLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp -SCEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred -CCEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 9999999853 4566788889999999988888999999998874
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.71 E-value=4.4e-13 Score=118.74 Aligned_cols=269 Identities=9% Similarity=-0.000 Sum_probs=184.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
+...+.+++++++|+++++.. +++|.+|+.+ ++.. ...+. .....+..+++++++.+.++...+ +.|..||
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~i~~~~ 84 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLP-TPDAKVMCLTISSDGEVWFTENAA-----NKIGRIT 84 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCC-cccCceeeEEECCCCCEEEeCCCC-----CeEEEEC
Confidence 456899999999999877766 4569999977 4332 12222 244678889999988887776655 8899999
Q ss_pred CCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEE-eeccCCcceEEEecCCCcEEEEeec
Q 014007 163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQI-ETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 163 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
.. ++. ..+. ....+.++++.+++.+.++ ++.|.+||. +++..... .........+++.+++. ++++.
T Consensus 85 ~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~-- 158 (299)
T 2z2n_A 85 KK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTE-- 158 (299)
T ss_dssp TT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEE--
T ss_pred CC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEe--
Confidence 75 432 3332 3457899999999887764 568999998 55443221 12234456788888874 44433
Q ss_pred CCCCcEEEEEccCCceeee--eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 236 LQKGQVRVEHYASKRTKFI--MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
..++.|..||. ++....+ ..+...+.+++++++|+++++...++. |.+||. +++.. .+........+.++++++
T Consensus 159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~ 234 (299)
T 2z2n_A 159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAGA 234 (299)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEECS
T ss_pred CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEECC
Confidence 34688999998 5544443 234556889999999998777777788 999998 77644 343322346789999999
Q ss_pred CCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE--ecCCCceEEEEccC
Q 014007 314 NAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR--LVEGSPYIVAFGHQ 391 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~ 391 (432)
+|+++++...++.|.+||. +++ +..+. .+...+.++++ ++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~------------------------------------~~~~~~~~~~~~~~~i~~-~~ 276 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNI------------------------------------IEEYPIQIKSAEPHGICF-DG 276 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTE------------------------------------EEEEECSSSSCCEEEEEE-CS
T ss_pred CCCEEEeccCCceEEEECC-CCc------------------------------------eEEEeCCCCCCccceEEe-cC
Confidence 9997776667889999998 332 11111 22346888999 88
Q ss_pred CCEEEEEecCCeEEEEEe
Q 014007 392 KNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 392 ~~~l~~~~~dg~v~iw~~ 409 (432)
|++.++.. .+.+..++.
T Consensus 277 g~l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 277 ETIWFAME-CDKIGKLTL 293 (299)
T ss_dssp SCEEEEET-TTEEEEEEE
T ss_pred CCEEEEec-CCcEEEEEc
Confidence 87666554 566666554
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.71 E-value=3.5e-15 Score=148.90 Aligned_cols=248 Identities=10% Similarity=0.031 Sum_probs=173.7
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcC-C-----cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC---
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTD-H-----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--- 152 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~-~-----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~--- 152 (432)
.+|...+..++|||||++||.+.+ + .|++||+++++.... .+ ....+..+.|+||+..|+.+..+..
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~~---~~~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL---ERVKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE---EEECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-cc---cCcccceEEEEeCCCEEEEEEECCcccc
Confidence 345557889999999999987652 2 499999998876532 22 2223567889999877766554411
Q ss_pred --------CCCCeEEEEeCCCCcee--EEee---cCCceEEEEEecCccEEEe--------CCeEEEEEcCC------Ce
Q 014007 153 --------YPLNKVMIWDDHQSRCI--GELS---FRSEVRSVKLRRDRIIVVL--------EQKIFVYNFAD------LK 205 (432)
Q Consensus 153 --------~~~~~v~iwd~~~~~~~--~~~~---~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~------~~ 205 (432)
.....|++|++.+++.. ..+. +...+..+.|+|||++++. +..|++||+.+ +.
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 00134999999887632 2223 3455789999999998872 35899999976 43
Q ss_pred -eeEEEeeccCCcceEEEecCCCcEEEEeecC-CCCcEEEEEccCCc---eeeeeccCC--ceeEEEEcCCCCEEEEEcC
Q 014007 206 -LLHQIETIANPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKR---TKFIMAHDS--RIACFALTQDGQLLATSST 278 (432)
Q Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~---~~~~~~~~~--~i~~~~~sp~~~~l~~~~~ 278 (432)
....+..+...+. ..++++|+.+++.+... .++.|.+||+.+.. ...+..|.. .+..++|++++.++++...
T Consensus 277 ~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 277 LKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp CCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEE
T ss_pred cceEEeeCCCCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEE
Confidence 3555655555543 35889999888765221 24579999998753 355555544 6888999988888888888
Q ss_pred CCc-eEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe----CCCeEEEEEecCCC
Q 014007 279 KGT-LVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS----DKGTVHVFNLKVNS 336 (432)
Q Consensus 279 dg~-~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 336 (432)
++. .|++||+.+++.+..+.. +...+..+.++|++..|+... ..++|++||+.+++
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~--~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCCCEEEecCC--CCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 874 167778878887777764 357789999999997666332 45789999998776
No 187
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=6.4e-14 Score=124.25 Aligned_cols=234 Identities=8% Similarity=-0.044 Sum_probs=165.8
Q ss_pred cCCCCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 80 TSSSPPPTLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
....+.....+++|+|+|+ +++++. +++|..|+.++. . ..+. .+...+..+++++++.++++...+ +.
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~--~~~~-~~~~~~~~l~~~~dg~l~v~~~~~-----~~ 91 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--L--SPEM-HPSHHQNGHCLNKQGHLIACSHGL-----RR 91 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--E--EEEE-SSCSSEEEEEECTTCCEEEEETTT-----TE
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--e--EEEE-CCCCCcceeeECCCCcEEEEecCC-----Ce
Confidence 3344566788999999998 666776 555999998766 2 2232 355668899999999888887766 89
Q ss_pred EEEEeCCCCceeEEee-----cCCceEEEEEecCccEEEeC--------------------CeEEEEEcCCCeeeEEEee
Q 014007 158 VMIWDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIET 212 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~ 212 (432)
|.+||..+++...... ....+..++++++|.++++| +.|..++.. ++. ..+..
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~ 169 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR 169 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec
Confidence 9999988887544332 12356789999999988852 356666654 443 33434
Q ss_pred ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc-CCce----eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-SKRT----KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~----~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
.......++|+|+++.+ ++ ...++.|.+|++. .+.+ ..+..+...+.+++++++|+++++. ++. |.+||
T Consensus 170 ~~~~~~gi~~s~dg~~l-v~--~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~ 243 (296)
T 3e5z_A 170 DRVKPNGLAFLPSGNLL-VS--DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLT 243 (296)
T ss_dssp CCSSEEEEEECTTSCEE-EE--ETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEEC
T ss_pred CCCCCccEEECCCCCEE-EE--eCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEEC
Confidence 44455689999999866 43 3467899999986 3333 2223345567889999999877666 677 99999
Q ss_pred CCCCceEEEEEeCCCcCceEEEEE-CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAF-SSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.. ++.+..+..+ .. +.+++| +|+++.|++++.+ .+.-++..+.+
T Consensus 244 ~~-g~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 244 PD-GDELGRVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp TT-SCEEEEEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred CC-CCEEEEEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 75 8888888753 34 899999 6899989888865 45555666554
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=1.6e-14 Score=131.11 Aligned_cols=226 Identities=13% Similarity=0.076 Sum_probs=149.5
Q ss_pred CCeEEEEEcCCCCEEEEEcC----Cc--EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCC-C------
Q 014007 86 PTLLHISFNQDHGCFAAGTD----HG--FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDP-Q------ 152 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~----~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~-~------ 152 (432)
..+..++|+|||+.|+...+ +. |.+|++++++...... ... +..+.|+|++..++....+. .
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~----~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~ 133 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE----AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIF 133 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE----ESE-EEEEEECTTSSEEEEEEECCCC------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc----CCC-ccceeECCCCCEEEEEEccCCCcCCcEE
Confidence 46788999999999887762 22 7778887766542222 223 88899999987666553210 0
Q ss_pred ---------------CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C------C-eEEEEEcCCCeee
Q 014007 153 ---------------YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E------Q-KIFVYNFADLKLL 207 (432)
Q Consensus 153 ---------------~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d------~-~i~i~d~~~~~~~ 207 (432)
-....|++||+.+++.+..+... .+..+.|+||| ++++ + . ...+|.+.+++.
T Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~- 210 (347)
T 2gop_A 134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE- 210 (347)
T ss_dssp ---CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-
T ss_pred EcccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-
Confidence 00157999999888764445433 88899999999 5552 2 2 334444435543
Q ss_pred EEEeeccCCcceEEEecCCCcEEEEeecC-----CCCcEEEEEccCCceee-eeccCCceeE-EEEcCCCCEEEEEcCCC
Q 014007 208 HQIETIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHYASKRTKF-IMAHDSRIAC-FALTQDGQLLATSSTKG 280 (432)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~~~~~~~~-~~~~~~~i~~-~~~sp~~~~l~~~~~dg 280 (432)
..+..+ ..+ ..++|+|+.++++.... ....|.+|| ++.... ...+...+.. +.|+ ++ ++++++.++
T Consensus 211 ~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~ 283 (347)
T 2gop_A 211 EKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG 283 (347)
T ss_dssp EEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred EEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence 334333 333 34499999877664221 135788888 444333 3456777886 9999 88 889999999
Q ss_pred ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE-EEEEec
Q 014007 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV-HVFNLK 333 (432)
Q Consensus 281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i-~iwd~~ 333 (432)
. ++|| +.+++....+. +...|.+++|+| .++++++.++.. .||.+.
T Consensus 284 ~-~~l~-~~~g~~~~~~~---~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 284 S-VNLY-IWDGEIKPIAK---GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EEEE-EESSSEEEEEC---SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred c-EEEE-EcCCceEEEec---CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 8 9999 87666543333 357899999999 677777766654 777775
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.66 E-value=3.6e-15 Score=148.32 Aligned_cols=246 Identities=9% Similarity=-0.050 Sum_probs=163.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-----C-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC---
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGT-----D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ--- 152 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-----~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~--- 152 (432)
.+|...+.+++|||||++||.+. + ..|++||+++++......+. ......+.|++++..|+.+..+..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~---~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE---GGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS---CCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC---cccccceEEecCCCEEEEEEecCCCCC
Confidence 34566799999999999998543 2 23999999887643111221 111257889999988777665510
Q ss_pred -----CCCCeEEEEeCCCCce--eEEee---cCCceEEEEEecCccEEEe---CC----eEEEEEcCCCeeeEEEeeccC
Q 014007 153 -----YPLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVVL---EQ----KIFVYNFADLKLLHQIETIAN 215 (432)
Q Consensus 153 -----~~~~~v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~---d~----~i~i~d~~~~~~~~~~~~~~~ 215 (432)
.....|++|++.++.. ...+. +...+..+.|+|||++++. ++ .|++|+..+++ ...+..+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~ 272 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG 272 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC
Confidence 0013499999988763 22232 3467889999999988773 44 67777765554 344444444
Q ss_pred CcceEEEecCCCcEEEEeec-CCCCcEEEEEccCCce---eeeecc--CCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 216 PKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKRT---KFIMAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~--~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
......+ ++++ +++.+.. ..++.|.+||+.+... ..+..+ ...+..++|+ ++.++++...|+. .+||.+.
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~ 348 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVAT 348 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEE
T ss_pred ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEe
Confidence 4444444 6777 6655421 1368899999977542 444443 4568888988 7778888888987 7777554
Q ss_pred -CCceEEEEEeCCCcCceEEEEECCCCCEEEEEe----CCCeEEEEEecCCC
Q 014007 290 -DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS----DKGTVHVFNLKVNS 336 (432)
Q Consensus 290 -~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 336 (432)
+++.+..+..+ ....+..++++|+++.|+... ..++|++||+.+++
T Consensus 349 ~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 349 LKGKPVRTVQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TTCCEEEECCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCCCeeEEecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 46666555432 246788889999998776332 45789999998765
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=8e-14 Score=125.42 Aligned_cols=234 Identities=9% Similarity=0.036 Sum_probs=164.3
Q ss_pred CCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 86 PTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
.....+.+.. ++++++.. ++.|.+||..+++.. ..+. .......+++++++.++++...+ +.|.+||..
T Consensus 44 ~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~--~~i~--~~~~p~~i~~~~~g~lyv~~~~~-----~~v~~iD~~ 113 (328)
T 3dsm_A 44 DVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEV--GRIT--GFTSPRYIHFLSDEKAYVTQIWD-----YRIFIINPK 113 (328)
T ss_dssp SCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEE--EEEE--CCSSEEEEEEEETTEEEEEEBSC-----SEEEEEETT
T ss_pred ccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEE--EEcC--CCCCCcEEEEeCCCeEEEEECCC-----CeEEEEECC
Confidence 4567777753 44444444 456999999988765 3343 34566788887777777766455 899999999
Q ss_pred CCceeEEeecCC------ceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEee
Q 014007 165 QSRCIGELSFRS------EVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 165 ~~~~~~~~~~~~------~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
+++.+..+.... ....+++ .++.++++ ++.|.++|+.+++.+..+..... ...++++++|+ +++++.
T Consensus 114 t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~-p~~i~~~~dG~-l~v~~~ 190 (328)
T 3dsm_A 114 TYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ-PTSLVMDKYNK-MWTITD 190 (328)
T ss_dssp TTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-BCCCEECTTSE-EEEEBC
T ss_pred CCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-ccceEEcCCCC-EEEEEC
Confidence 999888877444 6677888 44444442 67899999999998888865443 35788999886 555543
Q ss_pred cCC--------CCcEEEEEccCCcee-eeecc-CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcC
Q 014007 235 GLQ--------KGQVRVEHYASKRTK-FIMAH-DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 235 g~~--------d~~i~i~d~~~~~~~-~~~~~-~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
+.. .+.|.++|..+..+. .+... ......++|+|++++|+++.. . |.+||..+++............
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~-v~~~d~~t~~~~~~~~~~~~~~ 267 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--D-IWRMPVEADRVPVRPFLEFRDT 267 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--S-EEEEETTCSSCCSSCSBCCCSS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--E-EEEEECCCCceeeeeeecCCCC
Confidence 321 278999999876654 33322 346899999999999888765 7 9999998887632111000135
Q ss_pred ceEEEEECC-CCCEEEEE----eCCCeEEEEEecCCC
Q 014007 305 EIYSLAFSS-NAQWLAVS----SDKGTVHVFNLKVNS 336 (432)
Q Consensus 305 ~i~~~~~s~-~~~~l~~~----~~dg~i~iwd~~~~~ 336 (432)
....++++| ++.++++. ..++.|.+||.. ++
T Consensus 268 ~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 268 KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence 688999999 55666665 578999999998 65
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.65 E-value=8.1e-14 Score=121.70 Aligned_cols=235 Identities=9% Similarity=-0.039 Sum_probs=161.5
Q ss_pred CeEEEEEcCCCCEEE-EEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 87 TLLHISFNQDHGCFA-AGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~-~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
...+++++++|++++ +.. +++|.+|+..+.... .+...+...+..+++++++.++++.. + +.|.+||..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~ 95 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---VLPFNGLYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAG 95 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---ECCCCSCCSCCCEEECTTCCEEEEET-T-----TEEEEECTT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---eEeeCCcCCcceeEECCCCCEEEEcC-C-----CEEEEEeCC
Confidence 778999999999776 434 455999986544322 11112334567788888887776665 5 899999976
Q ss_pred CCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 165 QSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 165 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
.... ..+. ....+.++++.+++.+.++ ++.|.+|+..+................++++++++ ++++. ..++
T Consensus 96 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~ 171 (270)
T 1rwi_B 96 SNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTD--TDNN 171 (270)
T ss_dssp CSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEE--GGGT
T ss_pred CceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEE--CCCC
Confidence 5543 3333 3367899999999887664 57899998655433222222223456789999886 55543 2468
Q ss_pred cEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007 240 QVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (432)
Q Consensus 240 ~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 318 (432)
.|.+||......... ..+...+.+++++++|.++++...++. |.+||........ +.. .+...+.+++++++|+++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~-v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQ-VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSC-EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEE
T ss_pred EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCc-EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEE
Confidence 899999887654433 233367899999999988777777888 9999986554332 221 122568999999999988
Q ss_pred EEEeCCCeEEEEEecCCCC
Q 014007 319 AVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 319 ~~~~~dg~i~iwd~~~~~~ 337 (432)
++...+++|++|++...+.
T Consensus 249 v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEGGGTEEEEECCCGGGS
T ss_pred EEECCCCEEEEEcCCCccc
Confidence 8888999999999987653
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.64 E-value=7.5e-12 Score=110.78 Aligned_cols=231 Identities=9% Similarity=-0.022 Sum_probs=161.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 84 PPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
....+.++++.++|+++++.. +++|.+|+.+ ++... ..+. .....+..+++.+++.+.++...+ +.|..||
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~-~~~~~~~~i~~~~~g~l~v~~~~~-----~~v~~~d 89 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVP-TPDAKVMCLIVSSLGDIWFTENGA-----NKIGKLS 89 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECS-STTCCEEEEEECTTSCEEEEETTT-----TEEEEEC
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECC-CCCCcceeEEECCCCCEEEEecCC-----CeEEEEC
Confidence 346789999999999877775 5569999977 43322 2232 234678889999988877776655 8899999
Q ss_pred CCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEcCCCeeeEE-EeeccCCcceEEEecCCCcEEEEeec
Q 014007 163 DHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKLLHQ-IETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 163 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
.. ++.. .+. ....+.++++.+++.+.++ ++.|..+|.. ++.... +.........+++.++++ ++++.
T Consensus 90 ~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~-- 163 (300)
T 2qc5_A 90 KK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTE-- 163 (300)
T ss_dssp TT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEE--
T ss_pred CC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEe--
Confidence 77 5543 333 3467899999998887664 5689999986 554422 221234456788888876 55543
Q ss_pred CCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC
Q 014007 236 LQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS 313 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~ 313 (432)
..++.|..+|. .+....+. .+...+..++++++|+++++....+. |.+||. +++... +........+.++++++
T Consensus 164 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~ 239 (300)
T 2qc5_A 164 NQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAGK 239 (300)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECS
T ss_pred cCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEECC
Confidence 34678999988 43333332 34456899999999988777777778 999997 565443 32222335689999999
Q ss_pred CCCEEEEEeCCCeEEEEEe
Q 014007 314 NAQWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 314 ~~~~l~~~~~dg~i~iwd~ 332 (432)
+|+++++...++.|..||.
T Consensus 240 ~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 240 NSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp TTCEEEEETTTTEEEEECT
T ss_pred CCCEEEeccCCCeEEEECC
Confidence 9997777666789999998
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.63 E-value=9.5e-14 Score=121.24 Aligned_cols=235 Identities=9% Similarity=-0.025 Sum_probs=159.6
Q ss_pred eEEEEeeeCCeEEEe-cCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe--CCeEEEEEcCCCee
Q 014007 131 GVVEMLFRCNILALV-GGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKL 206 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~-s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~ 206 (432)
....+++++++.+++ +...+ +.|.+||..++....... ....+.++++++++.++++ ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE
Confidence 667888988888777 65555 899999976544322111 3356889999999886664 57899999765443
Q ss_pred eEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEE
Q 014007 207 LHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVR 284 (432)
Q Consensus 207 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~ 284 (432)
..+. ........++++++++ ++++. ..++.|.+|+..+...... ......+.+++++++|+++++...++. |.
T Consensus 100 -~~~~~~~~~~p~~i~~~~~g~-l~v~~--~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~ 174 (270)
T 1rwi_B 100 -TVLPFDGLNYPEGLAVDTQGA-VYVAD--RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VV 174 (270)
T ss_dssp -EECCCCSCSSEEEEEECTTCC-EEEEE--GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EE
T ss_pred -eeeecCCcCCCcceEECCCCC-EEEEE--CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EE
Confidence 2222 2224556788998875 55443 2467899997655433222 223346789999999998777777788 99
Q ss_pred EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeeccc
Q 014007 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLP 364 (432)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (432)
+||............ ....+..++++++|.++++...++.|.+||........
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~------------------------- 227 (270)
T 1rwi_B 175 KLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV------------------------- 227 (270)
T ss_dssp EECTTTCCEEECCCS--SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-------------------------
T ss_pred EEecCCCceEeeccc--CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-------------------------
Confidence 999877654432221 22568999999999877777778899999986543110
Q ss_pred ceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCC
Q 014007 365 KYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPV 412 (432)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~ 412 (432)
....+...+..++++++|+.+++...++.|++|+++..
T Consensus 228 ----------~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 228 ----------LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ----------CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred ----------eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 00011235788999999998888888999999887553
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.63 E-value=3.7e-12 Score=116.25 Aligned_cols=270 Identities=8% Similarity=-0.032 Sum_probs=177.2
Q ss_pred EcCCCCEEEEEcC--C----cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCC
Q 014007 93 FNQDHGCFAAGTD--H----GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLN 156 (432)
Q Consensus 93 ~s~~~~~l~~~~~--~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~ 156 (432)
..|+++++.+... . .|.+||..+++.. ..+. ... .- .+.++|++..++.+. .+ +
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~--~~i~-~g~-~p-~i~~spDg~~lyv~n~~~~~~~rg~~~-----~ 97 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL--GHVN-GGF-LP-NPVAAHSGSEFALASTSFSRIAKGKRT-----D 97 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEE--EEec-CCC-CC-CeEECCCCCEEEEEeccccccccCCCC-----C
Confidence 3466666555431 2 6799998887755 4454 122 23 889999987776654 24 7
Q ss_pred eEEEEeCCCCceeEEeecC--------CceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEE-EeeccCCcceEEE
Q 014007 157 KVMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQ-IETIANPKGLCAV 222 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~ 222 (432)
.|.+||..+.+.+.++... .....+.++|||++++. ++.|.++| .+++.+.. +... .++.+
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~ 172 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHI 172 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEE
Confidence 8999999998888877632 34568999999998873 36799999 99988777 5432 13566
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccCCcee-eee-----ccCCc-eeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--e
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIM-----AHDSR-IACFALTQDGQLLATSSTKGTLVRIFNTLDGT--L 293 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~-----~~~~~-i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~ 293 (432)
.++++..+++. ..||.+.++|. .+... ... ....+ .....+.+++..++..+..+. |.+.|+.... .
T Consensus 173 ~~~~~~~~~~~--~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-v~vid~~~~~~~v 248 (373)
T 2mad_H 173 HPGAPSTFYLL--CAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK-ILQADISAAGATN 248 (373)
T ss_pred EeCCCceEEEE--cCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce-EEEEeccCCcceE
Confidence 78877766654 36899999999 64433 111 11112 123456666655555556778 9999987653 2
Q ss_pred EEEEEeCC--------CcCceEEEEECCCCCEEEEEeC----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007 294 LQEVRRGA--------DRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS 355 (432)
Q Consensus 294 ~~~~~~~~--------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (432)
+..+.... .......+.++||++.|+++.. .+.|.++|+.+.+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv----------------- 311 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----------------- 311 (373)
T ss_pred eeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE-----------------
Confidence 23332100 1133455889999988877653 357999999887632
Q ss_pred ceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEe-cCCeEEEEEecCCCCCcceE
Q 014007 356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILG-MDGSFYRCQFDPVNGGEMTQ 419 (432)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~ 419 (432)
.++... +....++|+|||+ +++++. .++.|.+|+. .+++.+.+
T Consensus 312 ------------------~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~--~t~~vv~~ 356 (373)
T 2mad_H 312 ------------------SQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDA--GAGDQDQS 356 (373)
T ss_pred ------------------EEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEEC--CCCCEEee
Confidence 233222 2478999999999 788877 4899999775 45555544
No 195
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.63 E-value=1.7e-12 Score=117.06 Aligned_cols=234 Identities=9% Similarity=0.000 Sum_probs=159.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
..+...+.+++|+++|++++++. +++|.+|+.++++.... .. .+...+..+++++++.++++...+. ...+.|.+
T Consensus 41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--~~-~~~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~ 116 (333)
T 2dg1_A 41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--FV-SHKANPAAIKIHKDGRLFVCYLGDF-KSTGGIFA 116 (333)
T ss_dssp ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--EE-CSSSSEEEEEECTTSCEEEEECTTS-SSCCEEEE
T ss_pred eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--ee-CCCCCcceEEECCCCcEEEEeCCCC-CCCceEEE
Confidence 34556789999999999887777 45599999877664422 11 2456788999999987776654210 00147999
Q ss_pred EeCCCCceeEEee---cCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 161 WDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 161 wd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
||..+++....+. ....+.++++++++.+++.+ +.|..+|..+++... +.........++++++++.
T Consensus 117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~ 195 (333)
T 2dg1_A 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKV 195 (333)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSE
T ss_pred EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCE
Confidence 9988776543332 34578999999999877742 356666655444332 3223344567899999987
Q ss_pred EEEEeecCCCCcEEEEEccC--Cceeee-----ecc--CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 229 LVLVCPGLQKGQVRVEHYAS--KRTKFI-----MAH--DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~--~~~~~~-----~~~--~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
++++. ..++.|.+||++. .....+ ... ...+..++++++|+++++...++. |.+||. +++.+..+..
T Consensus 196 l~v~~--~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~-v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 196 LWVTE--TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILI 271 (333)
T ss_dssp EEEEE--GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEEC
T ss_pred EEEEe--CCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCE-EEEECC-CCCEEEEEEc
Confidence 76653 3468999999953 222211 111 146788999999998888777888 999997 6777777764
Q ss_pred CCC----cCceEEEEECCCCCEEEEEeCC
Q 014007 300 GAD----RAEIYSLAFSSNAQWLAVSSDK 324 (432)
Q Consensus 300 ~~~----~~~i~~~~~s~~~~~l~~~~~d 324 (432)
... ...+.+++|+||++.|+.++.+
T Consensus 272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCCccccccCcceEEECCCCCEEEEEeCc
Confidence 311 1158999999998777766554
No 196
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.60 E-value=1.8e-13 Score=137.06 Aligned_cols=278 Identities=8% Similarity=-0.026 Sum_probs=173.4
Q ss_pred cCCCCEEEEEc-CCc---EEEEEcC-----CCeeEEEe---ecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 94 NQDHGCFAAGT-DHG---FRIYNCD-----PFREIFRR---DFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 94 s~~~~~l~~~~-~~~---i~iw~~~-----~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
+|+|++++... +.+ -.||..+ .++..... .+..++...+..+.|+||+..++.+..+.......|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 38999877654 322 4556543 22222111 122233456788999999987765432100001369999
Q ss_pred eCCCCceeEEeecCCceEEEEEecCccEEEe---CC--------------eEEEEEcCCCee--eEEEeecc--CCcceE
Q 014007 162 DDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQ--------------KIFVYNFADLKL--LHQIETIA--NPKGLC 220 (432)
Q Consensus 162 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~--------------~i~i~d~~~~~~--~~~~~~~~--~~~~~~ 220 (432)
|+.+++.+........+..++|+|| +.++. ++ .|++|++.++.. ...+.... ..+..+
T Consensus 195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999987654323333467899999 76662 32 389999877642 22222222 235678
Q ss_pred EEecCCCcEEEEeecC--CCCcEEEEEccCC--c-eeeeeccCCceeEEEEcCCCCEEEEEcC----CCceEEEEECCCC
Q 014007 221 AVSQGVGSLVLVCPGL--QKGQVRVEHYASK--R-TKFIMAHDSRIACFALTQDGQLLATSST----KGTLVRIFNTLDG 291 (432)
Q Consensus 221 ~~~~~~~~~~~~~~g~--~d~~i~i~d~~~~--~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~----dg~~i~vwd~~~~ 291 (432)
.|+|||+.+++..... ....|++||+.++ . ...+..+...+.... +|+|+.|+..+. ++. |.+||+.++
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~-l~~~d~~~~ 351 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKK-IVRVDLSGS 351 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCE-EEEEECSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCE-EEEEeCCCC
Confidence 9999999887765322 2458999999876 5 666666666665554 488988887765 456 999998875
Q ss_pred -ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CCCCCCCCCCCCCCCCCCCCCceeEeecccceeec
Q 014007 292 -TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV-NSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSS 369 (432)
Q Consensus 292 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (432)
.....+..+ +...+..++|+ ++.++++...|+..+||.+.. ++.
T Consensus 352 ~~~~~~l~~~-~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~-------------------------------- 397 (741)
T 1yr2_A 352 TPRFDTVVPE-SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKP-------------------------------- 397 (741)
T ss_dssp SCEEEEEECC-CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCE--------------------------------
T ss_pred ccccEEEecC-CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCc--------------------------------
Confidence 233444433 34557778887 667788888999888887652 221
Q ss_pred ceeeEEEEec-CCCceEEEEccCCCEEEEE----ecCCeEEEEEecC
Q 014007 370 EWSVAQFRLV-EGSPYIVAFGHQKNTVVIL----GMDGSFYRCQFDP 411 (432)
Q Consensus 370 ~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~----~~dg~v~iw~~~~ 411 (432)
...+..+ .+.|..++++|+++.|+.. ...+.|++|++..
T Consensus 398 ---~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 398 ---AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp ---EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred ---eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 1122232 4567889999998876633 3357888887643
No 197
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.59 E-value=5.2e-12 Score=111.91 Aligned_cols=227 Identities=13% Similarity=0.104 Sum_probs=153.8
Q ss_pred eEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeE
Q 014007 131 GVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLH 208 (432)
Q Consensus 131 ~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~ 208 (432)
..-...|++ ++.++++...+ +.|+.||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++...
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPA-----KKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVV 87 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTT-----TEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEE
T ss_pred cccCCeEECCCCEEEEEECCC-----CEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEE
Confidence 344677777 35555555555 8999999887664 4555678899999999998766 47889999998876543
Q ss_pred EEeec----cCCcceEEEecCCCcEEEEeecCC-------CCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEE-E
Q 014007 209 QIETI----ANPKGLCAVSQGVGSLVLVCPGLQ-------KGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLA-T 275 (432)
Q Consensus 209 ~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~-------d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~-~ 275 (432)
..... ......++++++|+ +++...+.. ...-.+|.++. +....+..+......++|+|+++.|+ +
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 33221 12345688999987 555442211 12334554443 33444444455678999999998764 5
Q ss_pred EcCCCceEEEEEC--CCCceE--EEEEe-CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCC
Q 014007 276 SSTKGTLVRIFNT--LDGTLL--QEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPT 350 (432)
Q Consensus 276 ~~~dg~~i~vwd~--~~~~~~--~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 350 (432)
.+.++. |.+||+ .++... ..+.. ......+..++++++|++.++....+.|.+||..+++.
T Consensus 167 ~~~~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~------------- 232 (297)
T 3g4e_A 167 DSLSYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKR------------- 232 (297)
T ss_dssp EGGGTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCE-------------
T ss_pred cCCCCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceE-------------
Confidence 556777 999997 466542 22221 11235678999999999888877888999999987762
Q ss_pred CCCCCceeEeecccceeecceeeEEEEecCCCceEEEEc-cCCCEEEEEec
Q 014007 351 LPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILGM 400 (432)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 400 (432)
+..+..+...+++++|. ||++.|++++.
T Consensus 233 ----------------------~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 233 ----------------------LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ----------------------EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ----------------------EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 33455666679999998 89888776654
No 198
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.59 E-value=6.6e-13 Score=119.68 Aligned_cols=274 Identities=11% Similarity=0.121 Sum_probs=177.6
Q ss_pred EEcCCCCEEEEEcC------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCC
Q 014007 92 SFNQDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPL 155 (432)
Q Consensus 92 ~~s~~~~~l~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~ 155 (432)
...|+++.+.+... +.|.++|..+++.. ..+..+.. . .+.++|++..++.++ .+
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~--~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~~G~~~----- 108 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI--GMIDGGFL-P--NPVVADDGSFIAHASTVFSRIARGERT----- 108 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE--EEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEE-----
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE--EEEECCCC-C--cEEECCCCCEEEEEcccccccccCCCC-----
Confidence 45688887777653 34999999888766 44431222 2 388999987665543 24
Q ss_pred CeEEEEeCCCCceeEEeecC--------CceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEE
Q 014007 156 NKVMIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAV 222 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 222 (432)
+.|.+||..+++.+.++... .....+.++|||++++. ++.|.++|+.+++.+.++.... +..+
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~ 184 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHI 184 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----ccee
Confidence 68999999999999888632 25678999999997762 4789999999999998885422 2233
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccC-Cceee-----eeccCCcee-EEEEc-CCCCEEEEEcCCCceEEEEECCCCc--
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKF-----IMAHDSRIA-CFALT-QDGQLLATSSTKGTLVRIFNTLDGT-- 292 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~-----~~~~~~~i~-~~~~s-p~~~~l~~~~~dg~~i~vwd~~~~~-- 292 (432)
.|.+...+++. +.||.+.+.++.. +.+.. +..-...+. ...|. ++|++++ .+.+|. |++.|+.+..
T Consensus 185 ~P~g~~~~~~~--~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~-V~v~d~~~~~~~ 260 (386)
T 3sjl_D 185 FPTAPDTFFMH--CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGK-IHQIDLSSGDAK 260 (386)
T ss_dssp EEEETTEEEEE--ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSE-EEEEECTTSSCE
T ss_pred ecCCCceeEEE--CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCE-EEEEECCCCcce
Confidence 45444443332 2577777777765 33311 111112222 23554 6786555 555788 9999987654
Q ss_pred eEEEEEe--------CCCcCceEEEEECCCCCEEEEEeC----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 014007 293 LLQEVRR--------GADRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTS 354 (432)
Q Consensus 293 ~~~~~~~--------~~~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 354 (432)
.+..+.. +-.......++++++++.|+.... .+.|.++|+.+.+.+.
T Consensus 261 v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--------------- 325 (386)
T 3sjl_D 261 FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--------------- 325 (386)
T ss_dssp ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE---------------
T ss_pred eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE---------------
Confidence 3333320 001223445788999998887643 2579999999987321
Q ss_pred CceeEeecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEec-CCeEEEEEecCCCCCcceEee
Q 014007 355 SLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILGM-DGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~-dg~v~iw~~~~~~~~~~~~~~ 421 (432)
.+... ..++.++|++|++ +|++++. ++.|.++| ..+++.+..++
T Consensus 326 --------------------~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD--~~t~k~~~~i~ 371 (386)
T 3sjl_D 326 --------------------KFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHD--AESGEELRSVN 371 (386)
T ss_dssp --------------------EEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEE--TTTCCEEEEEC
T ss_pred --------------------EEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEE--CCCCcEEEEec
Confidence 22221 1478999999997 6776554 89999965 46667665554
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=7e-12 Score=120.24 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=143.1
Q ss_pred eCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CCeEEEEEcC--CCeeeEEEee
Q 014007 138 RCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQKIFVYNFA--DLKLLHQIET 212 (432)
Q Consensus 138 ~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~--~~~~~~~~~~ 212 (432)
++...++++...+ +.|.++|..+++.+.++.....+..+.++|||++++. ++.|.+||+. +++.+..+..
T Consensus 164 d~~~~~~V~~~~~-----~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 164 DLENLFSVTLRDA-----GQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CGGGEEEEEETTT-----TEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCceEEEEeCCC-----CeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence 3556777777777 9999999999999999987777889999999998773 7899999995 7788888766
Q ss_pred ccCCcceEEEe----cCCCcEEEEeecCCCCcEEEEEccCCcee-eeec----------c-CCceeEEEEcCCCCEE-EE
Q 014007 213 IANPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMA----------H-DSRIACFALTQDGQLL-AT 275 (432)
Q Consensus 213 ~~~~~~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~----------~-~~~i~~~~~sp~~~~l-~~ 275 (432)
... ...++++ |+|+.++++. ..++.|.++|..+.+.. .+.. | ...+..+..++++..+ +.
T Consensus 239 G~~-P~~ia~s~~~~pDGk~l~v~n--~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 239 GSE-ARSIETSKMEGWEDKYAIAGA--YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp CSE-EEEEEECCSTTCTTTEEEEEE--EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred CCC-CceeEEccccCCCCCEEEEEE--ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 444 3578999 6999887664 46799999998874432 2221 2 2267888899876554 44
Q ss_pred EcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCC
Q 014007 276 SSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNS 336 (432)
Q Consensus 276 ~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 336 (432)
...+|. |.++|..+.+.+...... .......+.|+|+|++|+++. .++.|.++|+.+++
T Consensus 316 ~~~~g~-v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 316 VKETGK-ILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp ETTTTE-EEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ecCCCe-EEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 556677 999999876544332221 234677899999999987766 67899999999876
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=4.8e-12 Score=112.97 Aligned_cols=237 Identities=10% Similarity=0.054 Sum_probs=162.9
Q ss_pred CCCeEEEEEcCCCCEEEE-------Ec-CCcEEEEEcCCCeeEEEeec-ccCcceeEEEEeeeCC-eEEEecCCCCCCCC
Q 014007 85 PPTLLHISFNQDHGCFAA-------GT-DHGFRIYNCDPFREIFRRDF-ERGGGIGVVEMLFRCN-ILALVGGGPDPQYP 154 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~-------~~-~~~i~iw~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~ 154 (432)
-....+++|+++|+++++ +. +++|.+|+..+++......- ..++...+..+.++++ +.++++...
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 345688999999988877 33 66699999776654321110 0023456888999998 776665543
Q ss_pred CCeEEEEeCCCCceeEE-ee-----cCCceEEEEEecCccEEEeC------------------CeEEEEEcCCCeeeEEE
Q 014007 155 LNKVMIWDDHQSRCIGE-LS-----FRSEVRSVKLRRDRIIVVLE------------------QKIFVYNFADLKLLHQI 210 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~~~-~~-----~~~~v~~~~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~ 210 (432)
+.|.+||.. ++.... .. ....+.++++++++.+.+.+ +.|..||.. ++.....
T Consensus 92 -~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 -LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp -TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred -CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 579999988 665433 22 12358899999999877742 457777765 5443332
Q ss_pred eeccCCcceEEEe----cCCCcEEEEeecCCCCcEEEEEcc-CCce------eeeeccC-CceeEEEEcCCCCEEEEEcC
Q 014007 211 ETIANPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYA-SKRT------KFIMAHD-SRIACFALTQDGQLLATSST 278 (432)
Q Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~-~~~~------~~~~~~~-~~i~~~~~sp~~~~l~~~~~ 278 (432)
........++++ ++++.++++. ..++.|.+||.+ .+.. ..+..+. ..+..++++++|+++++...
T Consensus 169 -~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred -cCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence 223344678899 8887666543 357899999986 3321 1222333 56889999999998888777
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE-eCCCeEEEEEecCC
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDKGTVHVFNLKVN 335 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~ 335 (432)
++. |.+||..+++.+..+.. +...+.+++|+++|+.|+.+ ..++.|..|++...
T Consensus 246 ~~~-i~~~d~~~g~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 246 SSH-IEVFGPDGGQPKMRIRC--PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTE-EEEECTTCBSCSEEEEC--SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCE-EEEEcCCCCcEeEEEeC--CCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 888 99999887887777764 33679999999999955544 46789999998753
No 201
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.58 E-value=5.8e-13 Score=122.24 Aligned_cols=271 Identities=10% Similarity=0.041 Sum_probs=180.8
Q ss_pred CCCCEEEEEcC------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCCeE
Q 014007 95 QDHGCFAAGTD------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKV 158 (432)
Q Consensus 95 ~~~~~l~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~v 158 (432)
++++.+.+... +.|.++|..+.+.. ..+.-+ ... .+.+++++..++.+. .+ +.|
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv--~~I~vG-~~P--gia~SpDgk~lyVan~~~~~~~~G~~~-----~~V 151 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRIL--GMTDGG-FLP--HPVAAEDGSFFAQASTVFERIARGKRT-----DYV 151 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEE--EEEEEC-SSC--EEEECTTSSCEEEEEEEEEETTEEEEE-----EEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEE--EEEECC-CCC--ceEECCCCCEEEEEeccccccccCCCC-----CEE
Confidence 35555544432 45999999988876 334312 223 788999987665554 24 689
Q ss_pred EEEeCCCCceeEEeecC--------CceEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007 159 MIWDDHQSRCIGELSFR--------SEVRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (432)
.++|..+++.+.++... .....+.++|||++++. ++.|.++|+.+++.+..+.... +..+.|+
T Consensus 152 sviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~ 227 (426)
T 3c75_H 152 EVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPA 227 (426)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEE
T ss_pred EEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccC
Confidence 99999999998888632 34568999999988772 4689999999999988886522 2455666
Q ss_pred CCcEEEEeecCCCCcEEEEEccCCceee-----eeccCCce-eEEEEcCCCCEEEEEcCCCceEEEEECCCCceE--EEE
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYASKRTKF-----IMAHDSRI-ACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL--QEV 297 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~~~~~~-----~~~~~~~i-~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~--~~~ 297 (432)
++..+++.+ .||.+.+.+...+.+.. +.....++ ..+.|.+++..++..+..+. |.+.|+...... ..+
T Consensus 228 g~~~~v~~~--~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~-V~ViD~~~~~~~v~~~~ 304 (426)
T 3c75_H 228 SPTVFYMNC--RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGK-IFQADLTAEGATFRAPI 304 (426)
T ss_dssp ETTEEEEEE--TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSE-EEEEEECSSCEEECCCE
T ss_pred CCcEEEEEc--CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCc-EEEEeccCCceEEeeee
Confidence 666666543 47888888875444331 11111221 24567899888887788888 999998665432 122
Q ss_pred EeCC--------CcCceEEEEECCCCCEEEEEeC----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeE
Q 014007 298 RRGA--------DRAEIYSLAFSSNAQWLAVSSD----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFI 359 (432)
Q Consensus 298 ~~~~--------~~~~i~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (432)
.... .......++++|+++.+++... ++.|.++|+.+.+.+
T Consensus 305 ~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv--------------------- 363 (426)
T 3c75_H 305 EALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERI--------------------- 363 (426)
T ss_dssp ESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE---------------------
T ss_pred eeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEE---------------------
Confidence 2100 0112223789999887776642 357999999998732
Q ss_pred eecccceeecceeeEEEEecCCCceEEEEccCCC-EEEEEe-cCCeEEEEEecCCCCCcceEe
Q 014007 360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKN-TVVILG-MDGSFYRCQFDPVNGGEMTQL 420 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~v~iw~~~~~~~~~~~~~ 420 (432)
.++.... ..+.++|+|||+ +++++. .++.|.++|. .+++.+.++
T Consensus 364 --------------~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~--~t~kvv~tI 409 (426)
T 3c75_H 364 --------------NKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDA--ATGEELRSV 409 (426)
T ss_dssp --------------EEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEET--TTCCEEEEE
T ss_pred --------------EEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEEC--CCCCEEEEe
Confidence 2222222 377899999999 888888 4999999665 666666554
No 202
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=3.6e-12 Score=111.30 Aligned_cols=211 Identities=12% Similarity=0.036 Sum_probs=156.3
Q ss_pred CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007 96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (432)
Q Consensus 96 ~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~ 174 (432)
.+++|++++ ++.|.+||.++++........ ....+.++.+.+++.++++. + +.|+.||. +++.+..+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilvs~--~-----~~V~~~d~-~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILFSY--S-----KGAKMITR-DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEEEC--B-----SEEEEECT-TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEEeC--C-----CCEEEECC-CCCEEEEEcC
Confidence 456788887 444999999888877544331 22467788889999988854 3 78999998 8999999983
Q ss_pred --CCceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeecc------CCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 175 --RSEVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 175 --~~~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
...+.++.+.++|.+++. ++.|..+|. +++.+..+.... .....+++.++|+.++ + ...++.|.
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv--~-~~~~~~v~ 149 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLV--P-LFATSEVR 149 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEE--E-ETTTTEEE
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEE--E-ecCCCEEE
Confidence 357889999999998884 346777774 788777765321 1334567788887543 2 34689999
Q ss_pred EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC----cCceEEEEECCCCCEE
Q 014007 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----RAEIYSLAFSSNAQWL 318 (432)
Q Consensus 243 i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----~~~i~~~~~s~~~~~l 318 (432)
.||...+.+..+... ..+.++.+.++|++++++..++. |..+|..+|+.+.++..... -..+..+...++|..+
T Consensus 150 ~~d~~G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~-v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~ 227 (276)
T 3no2_A 150 EIAPNGQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHC-FVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLY 227 (276)
T ss_dssp EECTTSCEEEEEECS-SCCCEEEECTTSCEEEECBTTSE-EEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEE
T ss_pred EECCCCCEEEEEECC-CCccceeEcCCCCEEEEeCCCCe-EEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEE
Confidence 999985555555443 45677888999999999888888 99999999999999974211 1237889999999988
Q ss_pred EEEe
Q 014007 319 AVSS 322 (432)
Q Consensus 319 ~~~~ 322 (432)
++..
T Consensus 228 v~~~ 231 (276)
T 3no2_A 228 ICNW 231 (276)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8874
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.58 E-value=2.8e-12 Score=114.51 Aligned_cols=238 Identities=11% Similarity=0.082 Sum_probs=159.0
Q ss_pred eeEEEEeeeCCeEEEec-------CCCCCCCCCCeEEEEeCCCCceeEEee-----cCCceEEEEEecC-ccEEEe--CC
Q 014007 130 IGVVEMLFRCNILALVG-------GGPDPQYPLNKVMIWDDHQSRCIGELS-----FRSEVRSVKLRRD-RIIVVL--EQ 194 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s-------~~~d~~~~~~~v~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~-~~~~~~--d~ 194 (432)
....+++|++++.++++ +..+ +.|.+||..+++...... +...+.+++++++ +.+++. ++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~-----~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPA-----GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEEC-----CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred CCccCceECCCCCEEEEEeccccCCCCC-----CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 34567888888877777 5555 899999988877543322 3467899999999 875553 45
Q ss_pred eEEEEEcCCCeeeEE-Eee----ccCCcceEEEecCCCcEEEEeecCC-------------CCcEEEEEccCCceeeeec
Q 014007 195 KIFVYNFADLKLLHQ-IET----IANPKGLCAVSQGVGSLVLVCPGLQ-------------KGQVRVEHYASKRTKFIMA 256 (432)
Q Consensus 195 ~i~i~d~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~g~~-------------d~~i~i~d~~~~~~~~~~~ 256 (432)
.|.+||.. ++.... ... ....+..++++++++ ++++..+.. .+.|..+|.. +....+..
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence 89999987 665332 211 113466889999875 444432210 1567777765 44444444
Q ss_pred cCCceeEEEEc----CCCCEEEEE-cCCCceEEEEECC-CCceE--EEEEe-CCCc-CceEEEEECCCCCEEEEEeCCCe
Q 014007 257 HDSRIACFALT----QDGQLLATS-STKGTLVRIFNTL-DGTLL--QEVRR-GADR-AEIYSLAFSSNAQWLAVSSDKGT 326 (432)
Q Consensus 257 ~~~~i~~~~~s----p~~~~l~~~-~~dg~~i~vwd~~-~~~~~--~~~~~-~~~~-~~i~~~~~s~~~~~l~~~~~dg~ 326 (432)
+......++|+ |+++.|+.+ ..++. |.+||.. +++.. ..+.. ..+. ..+..++++++|+++++...++.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCe-EEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCE
Confidence 44567889999 999765554 56778 9999976 45421 12221 1122 45788999999998888878899
Q ss_pred EEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEE-ecCCeEE
Q 014007 327 VHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVIL-GMDGSFY 405 (432)
Q Consensus 327 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~ 405 (432)
|.+||..+++.. ..+..+...+.+++|+++++.|+++ ..++.|.
T Consensus 249 i~~~d~~~g~~~-----------------------------------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~ 293 (314)
T 1pjx_A 249 IEVFGPDGGQPK-----------------------------------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVW 293 (314)
T ss_dssp EEEECTTCBSCS-----------------------------------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred EEEEcCCCCcEe-----------------------------------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEE
Confidence 999998765521 1234455678999999999966555 4568888
Q ss_pred EEEecC
Q 014007 406 RCQFDP 411 (432)
Q Consensus 406 iw~~~~ 411 (432)
.|+++.
T Consensus 294 ~~~~~~ 299 (314)
T 1pjx_A 294 KFEWQR 299 (314)
T ss_dssp EEECSS
T ss_pred EEeCCC
Confidence 887754
No 204
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.58 E-value=4e-12 Score=116.00 Aligned_cols=232 Identities=11% Similarity=0.006 Sum_probs=159.1
Q ss_pred EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecc-cC---cceeEEEEeeeCCeEEEecCCC--CCC
Q 014007 90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFE-RG---GGIGVVEMLFRCNILALVGGGP--DPQ 152 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~-~~---~~~~v~~~~~~~~~~~~~s~~~--d~~ 152 (432)
.++|+|||++|+++. ++.|.+||..+.+......+. .. ....-..+.++|++..++.++. +
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~-- 147 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-- 147 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCC--
Confidence 789999999988875 344999999877665332221 00 0123447889999988776542 4
Q ss_pred CCCCeEEEEeCCCCceeEE-eecCCceEEEEEecCcc--EEE--eCCeEEEEEcCCCeeeEEEe-----eccCCc-ceEE
Q 014007 153 YPLNKVMIWDDHQSRCIGE-LSFRSEVRSVKLRRDRI--IVV--LEQKIFVYNFADLKLLHQIE-----TIANPK-GLCA 221 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~-~~~~~~v~~~~~~~~~~--~~~--~d~~i~i~d~~~~~~~~~~~-----~~~~~~-~~~~ 221 (432)
+.|.++| .+++.+.. +..... +.+.+++. ++. .||.+.++|. +++...... ....++ ....
T Consensus 148 ---~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 148 ---PAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred ---CeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 7899999 99998888 764443 34455543 222 3899999999 877664332 111121 1245
Q ss_pred EecCCCcEEEEeecCCCCcEEEEEccCCceee---eec----------cCCceeEEEEcCCCCEEEEEcC----------
Q 014007 222 VSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IMA----------HDSRIACFALTQDGQLLATSST---------- 278 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~----------~~~~i~~~~~sp~~~~l~~~~~---------- 278 (432)
+.+++..+++++ ..+.+.+.|+....... +.. .......+.++|+++.|+++..
T Consensus 220 ~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~ 296 (373)
T 2mad_H 220 QANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAA 296 (373)
T ss_pred eEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCC
Confidence 667777666654 46789999987643221 110 1223445889999998887653
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCC
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGS 338 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~ 338 (432)
.+. |.++|+.+++.+.++..+ ....+++|+|||+ +++++. .++.|.+||+.+++.+
T Consensus 297 ~~~-V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv 354 (373)
T 2mad_H 297 AKE-VTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD 354 (373)
T ss_pred CCe-EEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEE
Confidence 346 999999999999999743 4689999999999 777776 5899999999998854
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.57 E-value=2e-13 Score=136.71 Aligned_cols=246 Identities=10% Similarity=0.034 Sum_probs=160.2
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEcCC------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCC--
Q 014007 82 SSPPPTLLHISFNQDHGCFAAGTDH------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQY-- 153 (432)
Q Consensus 82 ~~~~~~v~~~~~s~~~~~l~~~~~~------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~-- 153 (432)
.+|...+..++|||||++||.+.+. .|++||+++++.... .+ +...+..+.|+++ ..|+.+..+...
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~---~~~~~~~~~wspD-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL---KWVKFSGLAWLGN-DALLYSRFAEPKEG 233 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE---EEEESCCCEESTT-SEEEEEECCCC---
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC---CCceeccEEEECC-CEEEEEEecCcccc
Confidence 3344478899999999999887532 399999998876421 11 2223357889998 665554433110
Q ss_pred -------CCCeEEEEeCCCCce--eEEee---cCCceEEEEEecCccEEEe---C-----CeEEEEEcCCC--eeeEEEe
Q 014007 154 -------PLNKVMIWDDHQSRC--IGELS---FRSEVRSVKLRRDRIIVVL---E-----QKIFVYNFADL--KLLHQIE 211 (432)
Q Consensus 154 -------~~~~v~iwd~~~~~~--~~~~~---~~~~v~~~~~~~~~~~~~~---d-----~~i~i~d~~~~--~~~~~~~ 211 (432)
....|++|++.++.. ...+. +...+..+.|+|||++++. + ..|++||+.++ +....+.
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~ 313 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI 313 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence 014599999987753 22333 2235889999999987772 3 28999999876 3145555
Q ss_pred eccCCcceEEEecCCCcEEEEeec-CCCCcEEEEEccCC--ceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 212 TIANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASK--RTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~--~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
.+....... ++++++.+++.+.. ..++.|.+||+.+. ....+ ..+...+..+.++ ++.++++...|+. .+||.
T Consensus 314 ~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~ 390 (741)
T 1yr2_A 314 PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLA 390 (741)
T ss_dssp CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEE
Confidence 444444333 46899988776532 12567999998873 33443 3445557778887 6677888888887 66665
Q ss_pred CC-CCceEEEEEeCCCcCceEEEEECCCCCEEEEE----eCCCeEEEEEecCCC
Q 014007 288 TL-DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS----SDKGTVHVFNLKVNS 336 (432)
Q Consensus 288 ~~-~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~ 336 (432)
+. +++.+..+... ....+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 391 ~~~~g~~~~~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAGAVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEEECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCceeeccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 43 46666666532 34678999999998866533 245789999998765
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=7.9e-12 Score=115.66 Aligned_cols=234 Identities=9% Similarity=0.079 Sum_probs=160.7
Q ss_pred CCCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC--eEEEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN--KVMIW 161 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~--~v~iw 161 (432)
-.....|+|+++|+++++... +.|++|+.+++..... .. .... .. +++++++..++.++.+ + .|.+|
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~~-~~~~-~~-ia~~~~g~~l~~~d~~-----~~~~I~~~ 199 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--HP-GFKG-GK-PAVTKDKQRVYSIGWE-----GTHTVYVY 199 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--EE-TCCB-CB-CEECTTSSEEEEEBSS-----TTCEEEEE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--ec-cCCC-Cc-eeEecCCCcEEEEecC-----CCceEEEE
Confidence 457889999999997777764 4499999887665422 22 1222 22 7888888766555543 3 89999
Q ss_pred eCCCCceeEEe----e-cCCceEEEEEec-CccEEEe--CCeEEEEEcCCCeeeEE----EeeccCCc--ceEEEecCCC
Q 014007 162 DDHQSRCIGEL----S-FRSEVRSVKLRR-DRIIVVL--EQKIFVYNFADLKLLHQ----IETIANPK--GLCAVSQGVG 227 (432)
Q Consensus 162 d~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~~~~--d~~i~i~d~~~~~~~~~----~~~~~~~~--~~~~~~~~~~ 227 (432)
+...+.....+ . ....+.+++++| ++.+++. ++.|+.||..++..... ........ ..++++|++.
T Consensus 200 d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g 279 (409)
T 3hrp_A 200 MKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDS 279 (409)
T ss_dssp EGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTT
T ss_pred EcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCC
Confidence 98766554444 2 456678999999 5665554 57899999887653221 11111112 2899999777
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeeeccC---------------CceeEEEEcCCCCEEEEEc-CCCceEEEEECCCC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------------SRIACFALTQDGQLLATSS-TKGTLVRIFNTLDG 291 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------------~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~ 291 (432)
.++++- ..++.|+.|+.+.. ...+.++. .....++++|+|+++++-. .++. |+.||+.++
T Consensus 280 ~lyv~d--~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G 355 (409)
T 3hrp_A 280 NFYMSD--QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDG 355 (409)
T ss_dssp EEEEEE--TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTT
T ss_pred EEEEEe--CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCC
Confidence 777653 45788999987765 33333332 3478999999999777777 7888 999998888
Q ss_pred ceEEEEEeCC-------------CcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 292 TLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 292 ~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+.. .+.+.. .-.....++++++|.++++-..+++|+.++++
T Consensus 356 ~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 356 YVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred EEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 654 343320 01358999999998888888888999988763
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.56 E-value=9.1e-12 Score=115.25 Aligned_cols=247 Identities=10% Similarity=0.030 Sum_probs=159.4
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e--CC--eEEEEEcCCC
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L--EQ--KIFVYNFADL 204 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~--d~--~i~i~d~~~~ 204 (432)
.....+++++++.++++...+ +.|++||..++............. ++|++++..++ . ++ .|.+++...+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~-----~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~ 204 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDD-----PRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG 204 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTT-----TEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred CCceEEEEeCCCCEEEEecCC-----CcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence 356788899998888887766 899999988777665555433344 99999998665 3 23 8999998765
Q ss_pred eeeEEE----eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee----e-ccCCce-e-EEEEcCC-CCE
Q 014007 205 KLLHQI----ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI----M-AHDSRI-A-CFALTQD-GQL 272 (432)
Q Consensus 205 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~----~-~~~~~i-~-~~~~sp~-~~~ 272 (432)
.....+ .........++++|++..++++ ..++.|+.||..++....+ . ++...- . .++|+|+ +.+
T Consensus 205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~---d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFV---DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TCEEEEEECCTTSCSCCCBCEECTTSSEEEEE---CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred ceeEEeeeccchhcCCcEEEEEeCCCCeEEEE---ECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 443333 1133456689999976667663 2478999999987665444 1 122222 3 9999995 666
Q ss_pred EEEEcCCCceEEEEECCCCceEEEEEeCC-------------CcCceEEEEECCCCCEEEEEe-CCCeEEEEEecCCCCC
Q 014007 273 LATSSTKGTLVRIFNTLDGTLLQEVRRGA-------------DRAEIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVNSGS 338 (432)
Q Consensus 273 l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-------------~~~~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~ 338 (432)
+++...++. |+.||.. ++ +..+.+.. .-.....++++++|+++++-+ .+++|+.|++.+++..
T Consensus 282 yv~d~~~~~-I~~~~~~-g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 282 YMSDQNLSS-VYKITPD-GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEETTTTE-EEEECTT-CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEeCCCCE-EEEEecC-CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 666667777 9999864 44 33333321 013478999999999777777 8899999997666411
Q ss_pred CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
...... ....+..... ....-.....++++++|+++++-..++.|+.+.+
T Consensus 359 -~~~g~~----------------~~~g~~~g~~----~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 359 -TVAGQV----------------DVASQIDGTP----LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEECT----------------TCBSCCCBST----TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEeCCC----------------CCCCcCCCCh----hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 000000 0000000000 0000134778999999888888888888888765
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.54 E-value=5.9e-12 Score=113.48 Aligned_cols=232 Identities=13% Similarity=0.032 Sum_probs=154.2
Q ss_pred EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccCc----ceeEEEEeeeCCeEEEecCC--CCCC
Q 014007 90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGG--PDPQ 152 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~s~~--~d~~ 152 (432)
.++++|||++|+++. ++.|.+||..+.+......+..+. ...-..+.+++++..+..++ .+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~-- 159 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA-- 159 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS--
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC--
Confidence 399999999887764 344999999988766433332100 12345678899987665543 24
Q ss_pred CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc-c-EEE--eCCeEEEEEcCC-CeeeEEEeec----cCCcc-eEEE
Q 014007 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-I-IVV--LEQKIFVYNFAD-LKLLHQIETI----ANPKG-LCAV 222 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~--~d~~i~i~d~~~-~~~~~~~~~~----~~~~~-~~~~ 222 (432)
+.|.++|+.+++.+.++...+. ..+.|.+ + +++ .||++.+.++.+ ++........ ..++. ...|
T Consensus 160 ---~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~ 233 (386)
T 3sjl_D 160 ---PAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY 233 (386)
T ss_dssp ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE
T ss_pred ---CeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccccccccee
Confidence 7999999999999999875442 1222433 2 222 388888888876 5543221111 11111 1355
Q ss_pred e-cCCCcEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcC----------
Q 014007 223 S-QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSST---------- 278 (432)
Q Consensus 223 ~-~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~---------- 278 (432)
. ++| .+++++ .+|.|++.|+.+........ .......++++++++.|+....
T Consensus 234 ~~~dG-~~~~vs---~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~ 309 (386)
T 3sjl_D 234 SQKAG-RLVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 309 (386)
T ss_dssp ETTTT-EEEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred EcCCC-cEEEEe---CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCC
Confidence 4 455 444454 46899999997754322111 1234456788999998888653
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEE-eCCCeEEEEEecCCCC
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVS-SDKGTVHVFNLKVNSG 337 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~-~~dg~i~iwd~~~~~~ 337 (432)
.+. |.++|+.+++.+..+..+ ..+.+|++++|++ +|+++ ..++.|.++|..+++.
T Consensus 310 ~~~-V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 310 SRF-VVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp EEE-EEEEETTTCCEEEEEEEE---EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred CCE-EEEEECCCCeEEEEEECC---CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 145 999999999999999854 4788999999997 66665 4689999999999884
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=1.1e-11 Score=109.92 Aligned_cols=222 Identities=9% Similarity=-0.016 Sum_probs=152.2
Q ss_pred CCCCeEEEEEcCCCCE-EEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEE
Q 014007 84 PPPTLLHISFNQDHGC-FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~-l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
+..--.+..|++++.. +.+.. .+.|..|+.++.... .+. ....+..+++++++.++++. + +.|.+|
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~---~~~--~~~~~~~i~~~~dG~l~v~~--~-----~~l~~~ 78 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ---RVT--MDAPVSSVALRQSGGYVATI--G-----TKFCAL 78 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE---EEE--CSSCEEEEEEBTTSSEEEEE--T-----TEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE---EEe--CCCceEEEEECCCCCEEEEE--C-----CeEEEE
Confidence 4445568899996554 44544 445999998776542 222 33567889999998877765 3 789999
Q ss_pred eCCCCceeEEeec-----CCceEEEEEecCccEEEeC------------CeEEEEEcCC-CeeeEEEeeccCCcceEEEe
Q 014007 162 DDHQSRCIGELSF-----RSEVRSVKLRRDRIIVVLE------------QKIFVYNFAD-LKLLHQIETIANPKGLCAVS 223 (432)
Q Consensus 162 d~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~d------------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 223 (432)
|..+++....... ...+.+++++++|++.+.+ ..-.+|.+.. ++... +.........++|+
T Consensus 79 d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~s 157 (297)
T 3g4e_A 79 NWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWS 157 (297)
T ss_dssp ETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEEC
T ss_pred ECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEc
Confidence 9988765433321 2347889999999877742 2234554432 33332 22233344679999
Q ss_pred cCCCcEEEEeecCCCCcEEEEEcc--CCcee------eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEE
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYA--SKRTK------FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQ 295 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~--~~~~~------~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~ 295 (432)
|+++.++++. ..++.|.+|+++ ++.+. .+..+...+..++++++|++.++....+. |.+||..+++.+.
T Consensus 158 pdg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 158 LDHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQ 234 (297)
T ss_dssp TTSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEE
T ss_pred CCCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEE
Confidence 9998877654 356889999974 33321 12234457889999999988877777788 9999998899999
Q ss_pred EEEeCCCcCceEEEEEC-CCCCEEEEEeC
Q 014007 296 EVRRGADRAEIYSLAFS-SNAQWLAVSSD 323 (432)
Q Consensus 296 ~~~~~~~~~~i~~~~~s-~~~~~l~~~~~ 323 (432)
.+..+ ...+++++|. |+++.|+.++.
T Consensus 235 ~i~~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECC--CCCceEEEEeCCCCCEEEEEcC
Confidence 88853 3679999998 88887766553
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.52 E-value=1.7e-12 Score=128.82 Aligned_cols=245 Identities=11% Similarity=0.091 Sum_probs=161.5
Q ss_pred CCCCCCCeEEEEEcCCCCEEEEEc-----CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCC--
Q 014007 81 SSSPPPTLLHISFNQDHGCFAAGT-----DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQ-- 152 (432)
Q Consensus 81 ~~~~~~~v~~~~~s~~~~~l~~~~-----~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~-- 152 (432)
..+|...+..++|||||++||.+. +.. |++||+++++.... .+ .......+.|+ |+..|+.+..+..
T Consensus 124 a~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~---~~~k~~~~~Ws-Dg~~l~y~~~~~~~~ 198 (693)
T 3iuj_A 124 SPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL---KDVKFSGISWL-GNEGFFYSSYDKPDG 198 (693)
T ss_dssp STTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE---EEEESCCCEEE-TTTEEEEEESSCCC-
T ss_pred cCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc---CCceeccEEEe-CCCEEEEEEecCccc
Confidence 345667899999999999998654 222 99999998875422 22 11223456777 7655544433310
Q ss_pred ------CCCCeEEEEeCCCCce--eEEeec----CCceEEEEEecCccEEEe-------CCeEEEEEcCCCe-eeEEEee
Q 014007 153 ------YPLNKVMIWDDHQSRC--IGELSF----RSEVRSVKLRRDRIIVVL-------EQKIFVYNFADLK-LLHQIET 212 (432)
Q Consensus 153 ------~~~~~v~iwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~~~~-------d~~i~i~d~~~~~-~~~~~~~ 212 (432)
-....|++|++.++.. ...+.. ...+..+.|+|||++++. .+.|+++|+.++. ....+..
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~ 278 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG 278 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence 1125699999987653 233332 234678999999998862 2489999997763 3445555
Q ss_pred ccCCcceEEEecCCCcEEEEeec-CCCCcEEEEEccCCce---eeeeccCCceeEEEEcCCCCEEEEEcCCC---ceEEE
Q 014007 213 IANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASKRT---KFIMAHDSRIACFALTQDGQLLATSSTKG---TLVRI 285 (432)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~~i~v 285 (432)
+....... ++++++.+++.+.. ...+.|..+|+.+... +.+..|...+. .|++++++|+....++ . |++
T Consensus 279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~-l~~ 354 (693)
T 3iuj_A 279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATAR-VEQ 354 (693)
T ss_dssp SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEE-EEE
T ss_pred CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeE-EEE
Confidence 44444333 78888888776522 1247899999987543 56666766665 8999998887766544 5 889
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC----CeEEEEEecCCC
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK----GTVHVFNLKVNS 336 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 336 (432)
||+.. .....+... ....+..+.++++++.|+....+ ++|+.||+.+++
T Consensus 355 ~d~~g-~~~~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 355 FDYEG-KRVREVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECTTS-CEEEEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EECCC-CeeEEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 99864 444555432 33567888889888877655444 789999987765
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.51 E-value=5.2e-11 Score=106.87 Aligned_cols=223 Identities=10% Similarity=-0.001 Sum_probs=147.0
Q ss_pred EEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEE
Q 014007 133 VEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQI 210 (432)
Q Consensus 133 ~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~ 210 (432)
....|+++ +..+++...+ +.|..||..+++. ..+.....+.++++++++.+++ .++.|.+||..+++.....
T Consensus 52 egp~~~~~~~~l~~~d~~~-----~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILE-----RELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEETTTTEEEEEEGGG-----TEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEE
T ss_pred cCCeEeCCCCEEEEEECCC-----CEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEe
Confidence 45567775 4555555455 8999999887654 3445567899999999998777 4667999998887653322
Q ss_pred eec----cCCcceEEEecCCCcEEEEeecC----CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEE-cCCCc
Q 014007 211 ETI----ANPKGLCAVSQGVGSLVLVCPGL----QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGT 281 (432)
Q Consensus 211 ~~~----~~~~~~~~~~~~~~~~~~~~~g~----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~ 281 (432)
... ...+..++++++|+ ++++..+. ..+.|..++ .+....+..+......++|+|+|+.|+.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 211 12356788999886 44443221 124555555 44444444444567899999999876554 55677
Q ss_pred eEEEEECC--CC-ce--EEEEEe-CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007 282 LVRIFNTL--DG-TL--LQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS 355 (432)
Q Consensus 282 ~i~vwd~~--~~-~~--~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (432)
|.+||+. ++ +. ...+.. ......+..++++++|.++++...++.|.+||. +++.
T Consensus 203 -I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~------------------ 262 (326)
T 2ghs_A 203 -LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNH------------------ 262 (326)
T ss_dssp -EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCE------------------
T ss_pred -EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCE------------------
Confidence 9999986 55 32 122221 112345788999999998777767788999987 3431
Q ss_pred ceeEeecccceeecceeeEEEEecCCCceEEEEc-cCCCEEEEEecC
Q 014007 356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFG-HQKNTVVILGMD 401 (432)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d 401 (432)
+..+..+...+.+++|+ ++++.|++++..
T Consensus 263 -----------------~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 263 -----------------IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -----------------EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -----------------EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 23455566679999998 888877665543
No 212
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=2.1e-10 Score=101.26 Aligned_cols=232 Identities=7% Similarity=-0.042 Sum_probs=160.4
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe-e-cCCceEEEEEecCccEEEe---CCeEEEEEcC
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-S-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFA 202 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~ 202 (432)
+...+.++++++++...++...+ +.|.+||.. ++..... . ....+.++++.+++.+.++ ++.|..||..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~-----~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKA-----NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCC-----CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 44678899999998888776655 899999987 5433222 1 4567899999999887764 5689999975
Q ss_pred CCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEcC
Q 014007 203 DLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 203 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
++. ..+.. ....+..+++.+++. ++++. ..++.|.+||. .+....+. .+...+..++++++|+++++...
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPNGD-IWFTE--MNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTTSC-EEEEE--TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -CcE-EEEeCCCcCCCceeeEECCCCC-EEEEe--cCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 432 33321 233556788888764 44432 34688999998 44443332 34567899999999988887777
Q ss_pred CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCcee
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSF 358 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (432)
++. |..||. +++... +........+..++++++|+++++...++.|.+||. +++..
T Consensus 161 ~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-------------------- 216 (299)
T 2z2n_A 161 NNA-IGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-------------------- 216 (299)
T ss_dssp TTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE--------------------
T ss_pred CCE-EEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE--------------------
Confidence 788 999998 766543 322223356889999999997777767889999998 55410
Q ss_pred EeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 359 IKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
......+...+..++++++|+..++...++.|.+|+.
T Consensus 217 --------------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 217 --------------EFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp --------------EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred --------------EEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 0001122346788999999986666556788888765
No 213
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=1.1e-11 Score=113.70 Aligned_cols=234 Identities=15% Similarity=0.097 Sum_probs=159.3
Q ss_pred EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccC----cceeEEEEeeeCCeEEEecCCC--CCC
Q 014007 90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERG----GGIGVVEMLFRCNILALVGGGP--DPQ 152 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~s~~~--d~~ 152 (432)
.+.++|||++|+++. ++.|.++|..+.+......+.+. .......+.+++++..++.+.. +
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~-- 199 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPA-- 199 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSS--
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCC--
Confidence 799999999887775 33499999988876633333100 0123346788999876665432 4
Q ss_pred CCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc--cEEE--eCCeEEEEEcCCCeeeEE----EeeccCCc-ceEEEe
Q 014007 153 YPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFADLKLLHQ----IETIANPK-GLCAVS 223 (432)
Q Consensus 153 ~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~~~~~~~----~~~~~~~~-~~~~~~ 223 (432)
+.|.+.|+.+++.+.++...+. ....|++ .++. -||.+.+.++.+++.... +.....++ ..+.+.
T Consensus 200 ---~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 200 ---PAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp ---CEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEEC
T ss_pred ---CeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeec
Confidence 7899999999999988885432 2333433 2222 277777778755554422 21112222 235678
Q ss_pred cCCCcEEEEeecCCCCcEEEEEccCCceeeeec-------------cCCceeEEEEcCCCCEEEEEcC----------CC
Q 014007 224 QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-------------HDSRIACFALTQDGQLLATSST----------KG 280 (432)
Q Consensus 224 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~----------dg 280 (432)
+++..++++. ..+.|.+.|........+.. .......++++|+++.|++... .+
T Consensus 274 ~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~ 350 (426)
T 3c75_H 274 LRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR 350 (426)
T ss_dssp TTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred CCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence 9998887764 46889999987644322110 1122234789999988777642 34
Q ss_pred ceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCC
Q 014007 281 TLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGS 338 (432)
Q Consensus 281 ~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~ 338 (432)
. |.++|+.+++.+.++..+ .....+.|+|||+ +++++. .++.|.++|+.+++.+
T Consensus 351 ~-VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 351 F-VVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp E-EEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred E-EEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 6 999999999999999854 4588999999999 888887 5999999999998843
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.44 E-value=2.5e-10 Score=102.39 Aligned_cols=216 Identities=10% Similarity=0.053 Sum_probs=147.9
Q ss_pred CeEEEEEcCCCC-EEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 87 TLLHISFNQDHG-CFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 87 ~v~~~~~s~~~~-~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
-..+..|+|++. ++.++. +++|..|+.++++... +. ....+.++.+++++.++++.. ..|.+||..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---~~--~~~~v~~i~~~~dg~l~v~~~-------~gl~~~d~~ 117 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV---HA--LPFMGSALAKISDSKQLIASD-------DGLFLRDTA 117 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---EE--CSSCEEEEEEEETTEEEEEET-------TEEEEEETT
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE---EE--CCCcceEEEEeCCCeEEEEEC-------CCEEEEECC
Confidence 456789999855 445554 4459999987765432 22 234678889999988877653 459999988
Q ss_pred CCceeEEeec-----CCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEE
Q 014007 165 QSRCIGELSF-----RSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLV 230 (432)
Q Consensus 165 ~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (432)
+++....... ...+.+++++++|++.+.+ +.|..++ +++... +.........++|+++++.++
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~ly 194 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGY 194 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEE
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEE
Confidence 8775433221 2358899999999877642 3566666 455433 322333456789999998877
Q ss_pred EEeecCCCCcEEEEEcc--CC-ce---eee---eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCC
Q 014007 231 LVCPGLQKGQVRVEHYA--SK-RT---KFI---MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA 301 (432)
Q Consensus 231 ~~~~g~~d~~i~i~d~~--~~-~~---~~~---~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~ 301 (432)
++. ..++.|.+||++ ++ .+ ..+ ......+..++++++|+++++...++. |.+||. +++.+..+..+
T Consensus 195 v~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~-v~~~d~-~g~~~~~i~~~- 269 (326)
T 2ghs_A 195 FVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA-VDRYDT-DGNHIARYEVP- 269 (326)
T ss_dssp EEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTE-EEEECT-TCCEEEEEECS-
T ss_pred EEE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCE-EEEECC-CCCEEEEEECC-
Confidence 653 356899999986 34 22 122 223456788999999987777666778 999997 68887777743
Q ss_pred CcCceEEEEEC-CCCCEEEEEeC
Q 014007 302 DRAEIYSLAFS-SNAQWLAVSSD 323 (432)
Q Consensus 302 ~~~~i~~~~~s-~~~~~l~~~~~ 323 (432)
...+++++|+ ++++.|++++.
T Consensus 270 -~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 -GKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp -CSBEEEEEEESTTSCEEEEEEB
T ss_pred -CCCcEEEEEecCCCCEEEEEec
Confidence 3579999998 88887765553
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=7.6e-11 Score=104.79 Aligned_cols=228 Identities=11% Similarity=0.005 Sum_probs=152.1
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 83 SPPPTLLHISFNQDHG-CFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 83 ~~~~~v~~~~~s~~~~-~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
..........|+|+|+ ++.++.. +.|..|+.+ ++.. .+. .....+..+.+++++.++++...+ +.|.+
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~---~~~-~~~~~~~gl~~d~dG~l~v~~~~~-----~~v~~ 111 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD---VLL-DATAFTNGNAVDAQQRLVHCEHGR-----RAITR 111 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE---EEE-ESCSCEEEEEECTTSCEEEEETTT-----TEEEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE---EEe-CCCCccceeeECCCCCEEEEECCC-----CEEEE
Confidence 3445677899999999 4455554 449999874 3322 222 244567889999999888876655 78999
Q ss_pred EeCCCCceeEEee-----cCCceEEEEEecCccEEEeC--------------------CeEEEEEcCCCeeeEEEeeccC
Q 014007 161 WDDHQSRCIGELS-----FRSEVRSVKLRRDRIIVVLE--------------------QKIFVYNFADLKLLHQIETIAN 215 (432)
Q Consensus 161 wd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~ 215 (432)
|+.. ++...... ....+.++++.++|.+.++| +.|+.||..+++..... ...
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 9975 55332222 12346789999999988853 45777887666544332 333
Q ss_pred CcceEEEecCCCcEEEEeecC---CCCcEEEEEccCCcee---ee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEEC
Q 014007 216 PKGLCAVSQGVGSLVLVCPGL---QKGQVRVEHYASKRTK---FI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNT 288 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~~~~---~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~ 288 (432)
....++|+|+++.++++.... ..+.|.+|++....+. .+ .........++++++|++. +++.+ . |.+||.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-g-v~~~~~ 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-G-VCVFDS 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-E-EEEECT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-c-EEEECC
Confidence 445789999998887764210 0368999998764321 11 1123456678999999954 44444 5 999996
Q ss_pred CCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 014007 289 LDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 289 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd 331 (432)
+++.+..+... ..+.+++|+++++.|..++.++ ++.++
T Consensus 266 -~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 266 -DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp -TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred -CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 78888888743 3588999999998888887654 44333
No 216
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.43 E-value=1.1e-09 Score=99.35 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=124.4
Q ss_pred eEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEee--------cCCceEEEEEecCccEEEe--C------CeEEEEE
Q 014007 141 ILALVGGGPDPQYPLNKVMIWDDHQS----RCIGELS--------FRSEVRSVKLRRDRIIVVL--E------QKIFVYN 200 (432)
Q Consensus 141 ~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~~--------~~~~v~~~~~~~~~~~~~~--d------~~i~i~d 200 (432)
..+++++..+ +.|+++|+.+. +.+++++ .......+.+.|+|.++.. + +.|.++|
T Consensus 96 ~~l~v~~l~s-----~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 96 RFLIVPGLRS-----SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CEEEEEBTTT-----CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEEC
T ss_pred CEEEEccCCC-----CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEE
Confidence 3455667666 89999999765 5666662 1124567788999944442 3 6899999
Q ss_pred cCCCeeeEEEeeccCC---cceEEEecCCCcEEEEee-c----------------CCCCcEEEEEccCCcee-eeec--c
Q 014007 201 FADLKLLHQIETIANP---KGLCAVSQGVGSLVLVCP-G----------------LQKGQVRVEHYASKRTK-FIMA--H 257 (432)
Q Consensus 201 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-g----------------~~d~~i~i~d~~~~~~~-~~~~--~ 257 (432)
..+++.+..+.....+ -..+.|+|+++.++ ++. | .....|.+||+.++++. ++.. .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~ 249 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE 249 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence 9999999888643332 22477899988443 321 0 23689999999885433 3332 1
Q ss_pred CCceeEEEE--cCCCCEEEEEcC------CCceEEEEECCCCce--EEEEEeCCC----------------cCceEEEEE
Q 014007 258 DSRIACFAL--TQDGQLLATSST------KGTLVRIFNTLDGTL--LQEVRRGAD----------------RAEIYSLAF 311 (432)
Q Consensus 258 ~~~i~~~~~--sp~~~~l~~~~~------dg~~i~vwd~~~~~~--~~~~~~~~~----------------~~~i~~~~~ 311 (432)
......+.| +|+++++++++. +++ |.+|....++. .+.+..... ......|.+
T Consensus 250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~-V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSS-IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEEEECSSTTCCEEEEEEEEETTTCCEE-EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CCccceeEeeECCCCCEEEEEEeeeccCCCce-EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 133455655 999999888775 446 87776655432 222211110 134688999
Q ss_pred CCCCCEEEEEe-CCCeEEEEEecCC
Q 014007 312 SSNAQWLAVSS-DKGTVHVFNLKVN 335 (432)
Q Consensus 312 s~~~~~l~~~~-~dg~i~iwd~~~~ 335 (432)
|+||++|.++. ..+.|.+||+...
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSST
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCC
Confidence 99999998877 5789999999744
No 217
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.42 E-value=2.6e-10 Score=101.36 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=146.4
Q ss_pred eeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCceeEEee-cCCceEEEEEecCccEEEe---CCeEEEEEcCCC
Q 014007 130 IGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADL 204 (432)
Q Consensus 130 ~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~ 204 (432)
.......|++++. +++++..+ +.|..|+. +++. ..+. ....+.+++++++|++++. ++.|.+|+.. +
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~-----~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVG-----RRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTT-----TEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cCccCCeEeCCCCEEEEEECCC-----CEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 3455678888876 55666666 89999997 5553 3444 6677899999999997775 3689999975 5
Q ss_pred eeeEEEeec----cCCcceEEEecCCCcEEEEee--cCC-------------CCcEEEEEccCCceeeeeccCCceeEEE
Q 014007 205 KLLHQIETI----ANPKGLCAVSQGVGSLVLVCP--GLQ-------------KGQVRVEHYASKRTKFIMAHDSRIACFA 265 (432)
Q Consensus 205 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--g~~-------------d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 265 (432)
+........ ...+..++++++|+ +++.-. |.. .+.|..+|..++....+. .......++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceE
Confidence 532222111 12355789999886 333210 111 256777777666655554 455678899
Q ss_pred EcCCCCEEEEEcCC------CceEEEEECCCCceE--EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 266 LTQDGQLLATSSTK------GTLVRIFNTLDGTLL--QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 266 ~sp~~~~l~~~~~d------g~~i~vwd~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
|+|+++.|+.+... +. |++||+..+... ..+.. ........++++++|++.++ +.+ .|.+|+.. ++.
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~-i~~~~~~~~~l~~~~~~~~-~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~~-g~~ 269 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVE-ITAFAWRDGALHDRRHFAS-VPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDSD-GQL 269 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCE-EEEEEEETTEEEEEEEEEC-CSSSCCCSEEECTTSCEEEC-CSS-EEEEECTT-SCE
T ss_pred EcCCCCEEEEEecCCcCCCCCE-EEEEEecCCCccCCeEEEE-CCCCCCCeEEECCCCCEEEe-cCC-cEEEECCC-CCE
Confidence 99999988777665 67 999998765421 12211 12244567899999995544 444 49999874 331
Q ss_pred CCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCe
Q 014007 338 SARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGS 403 (432)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 403 (432)
+..+..+. .+..++|+++++.|++++.++.
T Consensus 270 -----------------------------------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 270 -----------------------------------LGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp -----------------------------------EEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred -----------------------------------EEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 33344454 4889999999999998887643
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.42 E-value=1.8e-11 Score=121.56 Aligned_cols=235 Identities=10% Similarity=0.078 Sum_probs=152.7
Q ss_pred CcceeEEEEeeeCCeEEEe-----cCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---CC----
Q 014007 127 GGGIGVVEMLFRCNILALV-----GGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---EQ---- 194 (432)
Q Consensus 127 ~~~~~v~~~~~~~~~~~~~-----s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d~---- 194 (432)
++...+..+.|+|++..++ +|+.. ..|++||+.+++.+...........++|+ |++.++. +.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~-----~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDW-----REIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCE-----EEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC--
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCce-----EEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccc
Confidence 3555788889999998877 45444 68999999999865542222224578899 9887762 42
Q ss_pred ---------eEEEEEcCCCee--eEEEee---ccCCcceEEEecCCCcEEEEeec-CCCCcEEEEEccCC--ceeeeecc
Q 014007 195 ---------KIFVYNFADLKL--LHQIET---IANPKGLCAVSQGVGSLVLVCPG-LQKGQVRVEHYASK--RTKFIMAH 257 (432)
Q Consensus 195 ---------~i~i~d~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g-~~d~~i~i~d~~~~--~~~~~~~~ 257 (432)
.|++|++.++.. ...+.. +......+.++|||+.+++.... .....|+++|+.++ ....+..+
T Consensus 200 ~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 200 ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp -----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 499999887542 222222 22334578899999988766532 23468999999775 56667777
Q ss_pred CCceeEEEEcCCCCEEEE-EcCC---CceEEEEECCCCce--EEEEEeCCCcCceEEEEECCCCCEEEEEeC-CC--eEE
Q 014007 258 DSRIACFALTQDGQLLAT-SSTK---GTLVRIFNTLDGTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSD-KG--TVH 328 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~-~~~d---g~~i~vwd~~~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~ 328 (432)
....... ++++|..|+. ...+ +. |..+|+.++.. ...+..+ ...+. .|++++++|+.... ++ .|+
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~-l~~~d~~~~~~~~~~~l~~~--~~~~~--~~s~~g~~lv~~~~~~g~~~l~ 353 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRR-LVTVDAANPGPAHWRDLIPE--RQQVL--TVHSGSGYLFAEYMVDATARVE 353 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCE-EEEEETTSCCGGGCEEEECC--CSSCE--EEEEETTEEEEEEEETTEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCE-EEEEeCCCCCccccEEEecC--CCCEE--EEEEECCEEEEEEEECCeeEEE
Confidence 7666665 5666665554 4333 56 99999988754 3445543 33444 88999998877664 44 688
Q ss_pred EEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEec-CCCceEEEEccCCCEEEEEecC----Ce
Q 014007 329 VFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLV-EGSPYIVAFGHQKNTVVILGMD----GS 403 (432)
Q Consensus 329 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d----g~ 403 (432)
+||+..+. ...+..+ .+.+..+.++++++.|+....+ +.
T Consensus 354 ~~d~~g~~------------------------------------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 354 QFDYEGKR------------------------------------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp EECTTSCE------------------------------------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred EEECCCCe------------------------------------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 88877443 1112222 2346667778888877766554 67
Q ss_pred EEEEEe
Q 014007 404 FYRCQF 409 (432)
Q Consensus 404 v~iw~~ 409 (432)
++.|++
T Consensus 398 l~~~d~ 403 (693)
T 3iuj_A 398 LYRFEP 403 (693)
T ss_dssp EEEECT
T ss_pred EEEEEC
Confidence 777655
No 219
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=1.4e-09 Score=95.97 Aligned_cols=229 Identities=10% Similarity=-0.030 Sum_probs=158.4
Q ss_pred cceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---cCCceEEEEEecCccEEEe---CCeEEEEEc
Q 014007 128 GGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---FRSEVRSVKLRRDRIIVVL---EQKIFVYNF 201 (432)
Q Consensus 128 ~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~---d~~i~i~d~ 201 (432)
......++.+.+++...++...+ +.|.+||.. ++... +. ....+.++++.+++.+.++ ++.|..||.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKA-----NKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTT-----TEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCCcceeeECCCCCEEEEcCCC-----CeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 44577888999988887777666 899999977 55433 32 3467899999999887664 478999997
Q ss_pred CCCeeeEEEee--ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee--ccCCceeEEEEcCCCCEEEEEc
Q 014007 202 ADLKLLHQIET--IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM--AHDSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 202 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~ 277 (432)
. ++.. .+.. ....+..+++.+++. ++++. ..++.|..+|.. +....+. .....+.+++++++|+++++..
T Consensus 91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 164 (300)
T 2qc5_A 91 K-GGFT-EYPLPQPDSGPYGITEGLNGD-IWFTQ--LNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTEN 164 (300)
T ss_dssp T-SCEE-EEECSSTTCCEEEEEECSTTC-EEEEE--TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred C-CCeE-EecCCCCCCCCccceECCCCC-EEEEc--cCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEec
Confidence 7 5543 3322 234456788887765 44443 346789999887 4444332 2356789999999999777776
Q ss_pred CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCce
Q 014007 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLS 357 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (432)
.++. |..||. +++... +........+..++++++|.++++....+.|.+||. +++.
T Consensus 165 ~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~-------------------- 220 (300)
T 2qc5_A 165 QNNS-IGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI-------------------- 220 (300)
T ss_dssp TTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--------------------
T ss_pred CCCe-EEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE--------------------
Confidence 6778 999997 666543 432223356899999999987777767788999988 3331
Q ss_pred eEeecccceeecceeeEEEE--ecCCCceEEEEccCCCEEEEEecCCeEEEEEe
Q 014007 358 FIKGVLPKYFSSEWSVAQFR--LVEGSPYIVAFGHQKNTVVILGMDGSFYRCQF 409 (432)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~ 409 (432)
..+. .+...+..+++.++|+..++...++.|..|+.
T Consensus 221 ----------------~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 221 ----------------SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp ----------------EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred ----------------EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 1111 12345788999999986666656788888654
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.40 E-value=6e-12 Score=113.92 Aligned_cols=169 Identities=11% Similarity=0.113 Sum_probs=125.5
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCe---------eEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFR---------EIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.++.+++++...+|++|+.+++.+|+++..+ ........ ... |..++| ++..++.+ .+ +.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~-~~-----~~ 107 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS-TR-----NA 107 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE-ES-----SE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE-cC-----Cc
Confidence 6889999999999999998899999975333 11101121 334 899999 65666666 66 99
Q ss_pred EEEEeCCCCceeEEee-cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 158 VMIWDDHQSRCIGELS-FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
|++||+.+........ +...+.++.+.+....++ .||.|.+||+.++.... ....+++++|+|+| ++++
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg--- 178 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVL--- 178 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEE---
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEE---
Confidence 9999998776555554 777888888776653333 49999999999877643 34578899999998 3433
Q ss_pred CCCCcEEEEEccCCce---eee------e---ccCCceeEEEEcCCCCEEEE
Q 014007 236 LQKGQVRVEHYASKRT---KFI------M---AHDSRIACFALTQDGQLLAT 275 (432)
Q Consensus 236 ~~d~~i~i~d~~~~~~---~~~------~---~~~~~i~~~~~sp~~~~l~~ 275 (432)
..||.+++|+.+...+ ..+ . +|...|.+|.|.+++.+|++
T Consensus 179 ~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 179 LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 3789999999888663 344 2 37889999999999998887
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.37 E-value=2.9e-10 Score=102.75 Aligned_cols=232 Identities=8% Similarity=-0.029 Sum_probs=150.8
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--------cCCceEEEEEecCccEEEeC--------
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVVLE-------- 193 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~d-------- 193 (432)
.....+++++++..+++.... ..+.++||.+.+++. ..+. +-..+.++++++++++.++|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~---~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQF---YQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGG---GCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCC---CCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 567888899998888875310 003245555445543 2221 34678999999999877754
Q ss_pred CeEEEEEcCCCeeeEEEeecc------CCcceEEEecCCCcEEEEeecC-CCCcEEEEEccCCceeee-ecc--------
Q 014007 194 QKIFVYNFADLKLLHQIETIA------NPKGLCAVSQGVGSLVLVCPGL-QKGQVRVEHYASKRTKFI-MAH-------- 257 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~-~d~~i~i~d~~~~~~~~~-~~~-------- 257 (432)
+.|.+||+.+++.+..+.... .....+++++++..++++-.+. .++.|.+||+.++....+ ..|
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~ 172 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI 172 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence 689999999998777765421 2346789998776666653210 468899999886544332 121
Q ss_pred ---------------------CCceeEEEEcCCCCEEEEEcCCCceEEEEECC---CCc--------eEEEEEeCCCcCc
Q 014007 258 ---------------------DSRIACFALTQDGQLLATSSTKGTLVRIFNTL---DGT--------LLQEVRRGADRAE 305 (432)
Q Consensus 258 ---------------------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~---~~~--------~~~~~~~~~~~~~ 305 (432)
...+..|+|+|+|+.|+.+...+..|..++.. .+. .+..+. +...
T Consensus 173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g---~~g~ 249 (343)
T 2qe8_A 173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS---EKPI 249 (343)
T ss_dssp CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE---ECCS
T ss_pred ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc---cCCC
Confidence 12367899999999998888777425555532 111 011111 2234
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE-ec-CCCc
Q 014007 306 IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR-LV-EGSP 383 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~v 383 (432)
...++++++|.++++...++.|.+||..+++ +..+. .+ -..+
T Consensus 250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~------------------------------------~~~~~~~~~~~~p 293 (343)
T 2qe8_A 250 CDGISIDKDHNIYVGDLAHSAIGVITSADRA------------------------------------YKLLVTDEKLSWT 293 (343)
T ss_dssp CSCEEECTTCCEEEEEGGGTEEEEEETTTTE------------------------------------EEEEEECGGGSCE
T ss_pred CceEEECCCCCEEEEccCCCeEEEEECCCCC------------------------------------EEEEEECCceecC
Confidence 5679999999999998899999999984443 11111 11 2457
Q ss_pred eEEEEccCCCEEEEEecCCeE
Q 014007 384 YIVAFGHQKNTVVILGMDGSF 404 (432)
Q Consensus 384 ~~~~~s~~~~~l~~~~~dg~v 404 (432)
..++|.++++++++.+..+.+
T Consensus 294 ~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 294 DSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEECTTSCEEEEECCGGGS
T ss_pred CeeEECCCCcEEEEeCccccc
Confidence 899999999888887755444
No 222
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.36 E-value=1.7e-09 Score=106.58 Aligned_cols=312 Identities=9% Similarity=0.050 Sum_probs=170.4
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcc--------eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGG--------IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
++.+++++.++.|.-+|..+++.+.......... .....+.+..+ .+++. ..| +.|..+|..+|+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~v~v~-~~d-----g~l~alD~~tG~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKG-KVYVG-AWD-----GRLIALDAATGK 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETT-EEEEE-CTT-----SEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECC-EEEEE-cCC-----CEEEEEECCCCC
Confidence 3433344345568888988888876655431110 00112333333 33333 344 899999999999
Q ss_pred eeEEeecC------CceEEEEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC-----------------
Q 014007 168 CIGELSFR------SEVRSVKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP----------------- 216 (432)
Q Consensus 168 ~~~~~~~~------~~v~~~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~----------------- 216 (432)
.+..+... ..+.+--...++.+++ . ++.|+.||..+|+.+..+......
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 99888732 1222211122455554 2 588999999999998777543221
Q ss_pred ---------------cceEEEecCCCcEEEEeecC------------C----CCcEEEEEccCCceee-ee--ccC----
Q 014007 217 ---------------KGLCAVSQGVGSLVLVCPGL------------Q----KGQVRVEHYASKRTKF-IM--AHD---- 258 (432)
Q Consensus 217 ---------------~~~~~~~~~~~~~~~~~~g~------------~----d~~i~i~d~~~~~~~~-~~--~~~---- 258 (432)
...++++++++.+++.+... . -+.|..+|.++++..- +. .|.
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~ 309 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY 309 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence 12467888888777654211 0 0258889998866542 22 221
Q ss_pred ---CceeEEEEcCCC---CEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---------Cce-----------------
Q 014007 259 ---SRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---------AEI----------------- 306 (432)
Q Consensus 259 ---~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---------~~i----------------- 306 (432)
....-+....+| ..|+.++.+|. |+++|..+|+.+..+...... ..+
T Consensus 310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~-l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 310 TSTQPMILADIKIAGKPRKVILHAPKNGF-FFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCSCCEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred ccCCCcEEEecccCCcEeeEEEEECCCCE-EEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 122223333477 68999999999 999999999998877632100 001
Q ss_pred -------EEEEECCCCCEEEEEeCCCeEEEEEecCCCCC---CCCCCCCCC--------CCCCCCCCceeEeecccceee
Q 014007 307 -------YSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS---ARSEPRSTS--------DPTLPTSSLSFIKGVLPKYFS 368 (432)
Q Consensus 307 -------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 368 (432)
..++|+|++.++++...+-...++.....+.- ......... ....+......+..+-+..-.
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~ 468 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK 468 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence 14688898888888765433333333200000 000000000 000000000111111111111
Q ss_pred cceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 369 SEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 369 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
..|.+. +...+....+..++..+++++.||.+++|+. .+|+.+...+
T Consensus 469 ~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~--~tG~~lw~~~ 515 (677)
T 1kb0_A 469 AAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA--ATGEKLWEAP 515 (677)
T ss_dssp EEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEET--TTCCEEEEEE
T ss_pred EEeecC----CCCCCcCcceEeCCCEEEEECCCCcEEEEEC--CCCceeeeee
Confidence 223221 2234555667778889999999999999665 6677766554
No 223
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=2.1e-11 Score=110.38 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=124.8
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-----------eeEEeecCCceEEEEEecCccEEE--eCCeEE
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-----------CIGELSFRSEVRSVKLRRDRIIVV--LEQKIF 197 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~--~d~~i~ 197 (432)
.+..+++++....+++++.+ .+.+|++...+ ......+.. |..++| |+.+++ .++.|+
T Consensus 39 ~~nlLais~~~gll~a~~~~------~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS------KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALY 109 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT------EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEE
T ss_pred cccEEEEcCCCCEEEEeCCC------EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEE
Confidence 56778888887777777764 67779865433 223344666 999999 766666 489999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEc
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~ 277 (432)
+||+.+.........+...+..+.+. ...++++ ..||.|.+||+....... +...|+|++|||+| ++.|.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~--~p~~av~---~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~ 179 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNV--NNTLVIL---NSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLL 179 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEEC--SSEEEEE---ETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEE
T ss_pred EEEchhhhccCccceeecceeeEEec--CCCEEEE---ECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEE
Confidence 99998765555555566666554443 3334433 378999999998765533 45689999999999 67899
Q ss_pred CCCceEEEEECCCCce--EEEEEe----C---CCcCceEEEEECCCCCEEEEEe
Q 014007 278 TKGTLVRIFNTLDGTL--LQEVRR----G---ADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~--~~~~~~----~---~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.||. |++|+...+++ ..++.. . .|...|.++.|.+++.++++-.
T Consensus 180 ~dg~-i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 180 KDRS-FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTSC-EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred cCCc-EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999 99999877775 556621 1 2457899999999999988643
No 224
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.34 E-value=1.9e-09 Score=97.87 Aligned_cols=229 Identities=11% Similarity=0.036 Sum_probs=148.7
Q ss_pred Ec--CCCCEEEEEc--CCcEEEEEcCC--CeeEEEeecc------cCcceeEEEEeeeCCeEEEecCCCCC-CCCCCeEE
Q 014007 93 FN--QDHGCFAAGT--DHGFRIYNCDP--FREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDP-QYPLNKVM 159 (432)
Q Consensus 93 ~s--~~~~~l~~~~--~~~i~iw~~~~--~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~d~-~~~~~~v~ 159 (432)
++ +++++|++.+ ++.|.++|+.+ .+....+.++ ......-..+...|++. +++...++ .-.++.|.
T Consensus 89 ~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi-~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 89 GKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAI-YISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCE-EEEEEEETTSCSCCEEE
T ss_pred cCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeE-EEEcCCCcCCCCCCeEE
Confidence 36 8899888877 45599999863 3334334441 01222445566778884 43332210 01126899
Q ss_pred EEeCCCCceeEEee-cCC---ceEEEEEecCccEEE-e---------------------CCeEEEEEcCCCeeeEEEeec
Q 014007 160 IWDDHQSRCIGELS-FRS---EVRSVKLRRDRIIVV-L---------------------EQKIFVYNFADLKLLHQIETI 213 (432)
Q Consensus 160 iwd~~~~~~~~~~~-~~~---~v~~~~~~~~~~~~~-~---------------------d~~i~i~d~~~~~~~~~~~~~ 213 (432)
++|..+++.+.++. ... --..+.|+|+++.++ + +++|.+||+.+++.+.++...
T Consensus 168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 99999999999887 222 244688899988777 3 378999999999888888653
Q ss_pred cC--CcceEEE--ecCCCcEEEEee---cCCCCcEEEEEccCCcee---ee--ec----------------cCCceeEEE
Q 014007 214 AN--PKGLCAV--SQGVGSLVLVCP---GLQKGQVRVEHYASKRTK---FI--MA----------------HDSRIACFA 265 (432)
Q Consensus 214 ~~--~~~~~~~--~~~~~~~~~~~~---g~~d~~i~i~d~~~~~~~---~~--~~----------------~~~~i~~~~ 265 (432)
.. ....+.| +|+++..++++. -..++.|.+|..+.+... .+ .. -......|.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 21 1223444 999998888763 004567877665542211 11 00 024578899
Q ss_pred EcCCCCEEEEEcCCCceEEEEECCC---CceEEEEEeCCC------------cCceEEEEECCCCCEEEEEe
Q 014007 266 LTQDGQLLATSSTKGTLVRIFNTLD---GTLLQEVRRGAD------------RAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 266 ~sp~~~~l~~~~~dg~~i~vwd~~~---~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~~~~ 322 (432)
++|||++|.++......|.+||+.+ .+.+..+..+.. ......++++|||++|+++.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999988776433399999863 456666664311 01358899999999999887
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.33 E-value=3e-09 Score=105.00 Aligned_cols=307 Identities=11% Similarity=0.056 Sum_probs=166.5
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcce-------e-EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI-------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
+..|++++ ++.|.-+|..+++............. . ...+.... +..++ +..| +.|+.+|..+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~v~v-~~~d-----g~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK-GKVYV-GVLD-----GRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET-TEEEE-ECTT-----SEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC-CEEEE-EccC-----CEEEEEECCCCC
Confidence 33444444 55688899988888766544311100 0 01122333 33333 3345 899999999999
Q ss_pred eeEEeecC------CceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeecc-C-----------------
Q 014007 168 CIGELSFR------SEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIA-N----------------- 215 (432)
Q Consensus 168 ~~~~~~~~------~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~-~----------------- 215 (432)
.+..+... ..+.+--.-.++.+++. ++.|+.||.++|+.+..+.... .
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~ 222 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW 222 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence 98887632 11211111125555552 5789999999999887765311 0
Q ss_pred -------------CcceEEEecCCCcEEEEeecCCCC-------------------cEEEEEccCCceee-eec--cC--
Q 014007 216 -------------PKGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTKF-IMA--HD-- 258 (432)
Q Consensus 216 -------------~~~~~~~~~~~~~~~~~~~g~~d~-------------------~i~i~d~~~~~~~~-~~~--~~-- 258 (432)
....++++++.+.+++.+ .++ .|..+|.++++..- +.. |.
T Consensus 223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW 299 (689)
T ss_dssp CSSTHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred CCceeeecCCCCccccceeEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence 112467888877766554 233 48999999866543 322 22
Q ss_pred -----CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEEeCCCcCc-------------------------
Q 014007 259 -----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAE------------------------- 305 (432)
Q Consensus 259 -----~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~------------------------- 305 (432)
..+.......+|+ .|+.++.+|. ++++|.++|+++....... ...
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~~~~-~~w~~~~~~~~~~pi~~~~~~~~~~~~~ 377 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGF-FYVIDRATGELLSAKGIVP-QSWTKGMDMKTGRPILDEENAAYWKNGK 377 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEESSC-CSSEEEEETTTTEEEECHHHHCTTTSSS
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCe-EEEEECCCCCEeccccccc-cccccccCccCCCcccchhhccccCCCC
Confidence 1122222223665 7889999999 9999999999986554221 000
Q ss_pred -------------eEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCC---CCCCC----------CCceeE
Q 014007 306 -------------IYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSD---PTLPT----------SSLSFI 359 (432)
Q Consensus 306 -------------i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~ 359 (432)
-..++|+|+..++++...+....++.................. ...+. .....+
T Consensus 378 ~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l 457 (689)
T 1yiq_A 378 RNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKL 457 (689)
T ss_dssp CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEE
T ss_pred eeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeE
Confidence 1126888988888887665544444333210000000000000 00000 000111
Q ss_pred eecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 360 KGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
..+-+..-...|. +..+. .+....++..+.+|++++.||.|+.|+. .+|+++.+.+
T Consensus 458 ~A~D~~tG~~~W~---~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~--~tG~~lw~~~ 513 (689)
T 1yiq_A 458 IAWDPVKQQAAWE---VPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA--DTGEKLWEQP 513 (689)
T ss_dssp EEEETTTTEEEEE---EEESS-SCCCCEEEETTTEEEEECTTSEEEEEET--TTCCEEEEEE
T ss_pred EEEECCCCCeEeE---ccCCC-CccCccceECCCEEEEECCCCcEEEEEC--CCCccceeee
Confidence 1111111112232 22222 3344466678889999999999999654 6677776554
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=5e-10 Score=101.24 Aligned_cols=233 Identities=9% Similarity=-0.002 Sum_probs=154.2
Q ss_pred CCeEEEEEcCCCCEEEEEc--CCc-EEEEEcCCCeeEEEeecc------cCcceeEEEEeeeCCeEEEecCCC-----CC
Q 014007 86 PTLLHISFNQDHGCFAAGT--DHG-FRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGP-----DP 151 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~--~~~-i~iw~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~-----d~ 151 (432)
..+..++++++|+++++.. +++ ++||.++.++.. .+. ..+...+..+++++++.+++.... +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~- 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI---PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV- 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE---ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC-
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee---cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC-
Confidence 6789999999999988863 222 667766543322 121 124567889999998876665432 3
Q ss_pred CCCCCeEEEEeCCCCceeEEeecC-------CceEEEEEecC-ccEEEe------CCeEEEEEcCCCeeeEEEeecc---
Q 014007 152 QYPLNKVMIWDDHQSRCIGELSFR-------SEVRSVKLRRD-RIIVVL------EQKIFVYNFADLKLLHQIETIA--- 214 (432)
Q Consensus 152 ~~~~~~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~-~~~~~~------d~~i~i~d~~~~~~~~~~~~~~--- 214 (432)
+.|.+||+.+++.+..+... ..+..++++++ +...++ ++.|.+||+.+++..+.+..+.
T Consensus 93 ----~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 93 ----PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp ----CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred ----CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 68999999999877776522 34689999975 444343 4589999998877655442210
Q ss_pred --------------------------CCcceEEEecCCCcEEEEeecCCCCcEEEEEccC---Cce------e--eeecc
Q 014007 215 --------------------------NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS---KRT------K--FIMAH 257 (432)
Q Consensus 215 --------------------------~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~---~~~------~--~~~~~ 257 (432)
.....++++|+++.++++. .....+..++... ... . ...++
T Consensus 169 ~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (343)
T 2qe8_A 169 PEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRIKSADLSNLQLTDAELGSKIERYSE 246 (343)
T ss_dssp CCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred ccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence 1235689999998777654 2234555555321 100 0 12234
Q ss_pred CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 258 DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 258 ~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
......++++++|.++++...++. |.+||..+++...... ...-..+.+++|.++|+++++.+..+.+.+|
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSA-IGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTE-EEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CCCCceEEECCCCCEEEEccCCCe-EEEEECCCCCEEEEEE-CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 456678999999999999888898 9999975676543333 2123568999999999888777655544433
No 227
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=3.9e-11 Score=108.30 Aligned_cols=252 Identities=6% Similarity=-0.068 Sum_probs=160.3
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC----------CCCCCCCCeEEEEeCCCCceeEEeecC-
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG----------PDPQYPLNKVMIWDDHQSRCIGELSFR- 175 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----------~d~~~~~~~v~iwd~~~~~~~~~~~~~- 175 (432)
.|.++|.++++.+ ..+..+.. . .+.+++++..+..+. .+ +.|.+||+.+++.+.++...
T Consensus 47 ~vsvID~~t~~v~--~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~-----~~VsviD~~T~~vv~~I~v~~ 116 (368)
T 1mda_H 47 ENWVSCAGCGVTL--GHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRT-----DYVEVFDPVTFLPIADIELPD 116 (368)
T ss_dssp EEEEEETTTTEEE--EEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEE-----EEEEEECTTTCCEEEEEEETT
T ss_pred eEEEEECCCCeEE--EEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCC-----CEEEEEECCCCCEEEEEECCC
Confidence 6889999888876 34432332 3 688999886665553 34 78999999999999998732
Q ss_pred -------CceEEEEEecCccEEEe-----CCeEEE--EEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcE
Q 014007 176 -------SEVRSVKLRRDRIIVVL-----EQKIFV--YNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 176 -------~~v~~~~~~~~~~~~~~-----d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
.....++++|||++++. ++.|.+ +|+.+ +..+... . +..+.|+++..+++. +.|+.+
T Consensus 117 ~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~---~~~~~p~g~~~~~~~--~~dg~~ 187 (368)
T 1mda_H 117 APRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S---CFHIHPGAAATHYLG--SCPASL 187 (368)
T ss_dssp SCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S---CCCCEEEETTEEECC--CCTTSC
T ss_pred ccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C---ceEEccCCCeEEEEE--cCCCCE
Confidence 34678999999987772 356888 88876 4555321 1 233567887776644 368888
Q ss_pred EEEEccC-----Cceee-----eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--eEEEEEeCC--------
Q 014007 242 RVEHYAS-----KRTKF-----IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT--LLQEVRRGA-------- 301 (432)
Q Consensus 242 ~i~d~~~-----~~~~~-----~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~~~~-------- 301 (432)
.+.|+.. +.+.. +.....+. . .+++..++..+. +. |.+.|+.+.. .+..+....
T Consensus 188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~~~~~~~~~~~~~~~~ 261 (368)
T 1mda_H 188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMKAAIDGNESGRKADNF 261 (368)
T ss_dssp EEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred EEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEEEEEEecccccccccc
Confidence 8888876 22211 11112233 3 555666656566 88 9999986543 222221100
Q ss_pred CcCceEEEEECCCCCEEEEEeC---------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeeccee
Q 014007 302 DRAEIYSLAFSSNAQWLAVSSD---------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWS 372 (432)
Q Consensus 302 ~~~~i~~~~~s~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (432)
.......++|+||++.++.+.. ++.+.++|+.+.+.+..
T Consensus 262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~-------------------------------- 309 (368)
T 1mda_H 262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-------------------------------- 309 (368)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC--------------------------------
T ss_pred ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE--------------------------------
Confidence 0011122689999998887543 23567999999874321
Q ss_pred eEEEEecCCCceEEEEccCCCEE-EEEe-cCCeEEEEEecCCCCCcceEee
Q 014007 373 VAQFRLVEGSPYIVAFGHQKNTV-VILG-MDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 373 ~~~~~~~~~~v~~~~~s~~~~~l-~~~~-~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
+.... ....++|+|||+++ ++.. .++.|.++|+ .+++.+.+++
T Consensus 310 ---i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~--~t~kvv~~I~ 354 (368)
T 1mda_H 310 ---ISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA--ASDQDQSSVE 354 (368)
T ss_dssp ---CEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES--SSCEEEEECC
T ss_pred ---EECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC--CCCcEEEEEE
Confidence 11221 36789999999854 4555 4899999765 5555555544
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.29 E-value=3.2e-09 Score=90.62 Aligned_cols=218 Identities=9% Similarity=-0.003 Sum_probs=142.5
Q ss_pred CceeEEeecCCc--eEEEEEecCccEEEe-----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007 166 SRCIGELSFRSE--VRSVKLRRDRIIVVL-----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 166 ~~~~~~~~~~~~--v~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
.+.+.++.|... ...+.|++++.+..+ ++.|+++|+.+++.+..+....... ...+..+++.++++. ..+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f-geGi~~~g~~lyv~t--~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF-GEGLTLLNEKLYQVV--WLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC-EEEEEEETTEEEEEE--TTC
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc-eEEEEEeCCEEEEEE--ecC
Confidence 356677776643 589999998765554 3689999999999998876433322 334555677777664 478
Q ss_pred CcEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCC
Q 014007 239 GQVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSN 314 (432)
Q Consensus 239 ~~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~ 314 (432)
+.+.++|..+.++ ..+...... ...+++||+.|+++..++. |.++|..+.+.+..+..+... ..++.+.|. +
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~-l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-d 161 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSI-LYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-N 161 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCe-EEEEECCCCcEEEEEEECCCCcccccceeEEEE-C
Confidence 9999999988544 344321121 2345668888887777788 999999999999888753221 136788888 7
Q ss_pred CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCE
Q 014007 315 AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNT 394 (432)
Q Consensus 315 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 394 (432)
|+.++....++.|.+.|..+++.+..++. .+..+...... .......+.++|+|+++.
T Consensus 162 g~lyvn~~~~~~V~vID~~tg~V~~~I~~----------------~g~~~~~~~~~------~~~~~v~nGIa~~~~~~~ 219 (266)
T 2iwa_A 162 GEVWANIWQTDCIARISAKDGTLLGWILL----------------PNLRKKLIDEG------FRDIDVLNGIAWDQENKR 219 (266)
T ss_dssp TEEEEEETTSSEEEEEETTTCCEEEEEEC----------------HHHHHHHHHTT------CTTCCCEEEEEEETTTTE
T ss_pred CEEEEecCCCCeEEEEECCCCcEEEEEEC----------------CCccccccccc------ccccCceEEEEEcCCCCE
Confidence 76665655788999999999883321100 00000000000 000134689999999876
Q ss_pred EEE-EecCCeEEEEEecCC
Q 014007 395 VVI-LGMDGSFYRCQFDPV 412 (432)
Q Consensus 395 l~~-~~~dg~v~iw~~~~~ 412 (432)
|++ +...+.+++-++...
T Consensus 220 lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 220 IFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCCCeEEEEEEecc
Confidence 555 556888988777654
No 229
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.27 E-value=1.6e-08 Score=92.62 Aligned_cols=221 Identities=10% Similarity=0.091 Sum_probs=133.1
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCc------ceeE-EEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG------GIGV-VEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC 168 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~------~~~v-~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~ 168 (432)
+..+.+++ ++.|..||.++++......+.... ...+ .......+..++.+ .+ +.|..+|..+|+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~~-----g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS--EK-----AQVYALNTSDGTV 125 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE--TT-----SEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc--CC-----CEEEEEECCCCCE
Confidence 44555555 556999999888877655553110 1222 22333333333333 34 8999999999999
Q ss_pred eEEeecCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCCc-----ceEEEecCCCcEEEEeecCCCCcE
Q 014007 169 IGELSFRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPK-----GLCAVSQGVGSLVLVCPGLQKGQV 241 (432)
Q Consensus 169 ~~~~~~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~d~~i 241 (432)
+..+.....+.......++.+++ . ++.|..+|..+++.+.......... ....+. +..+++ +..++.+
T Consensus 126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~---g~~~g~l 200 (376)
T 3q7m_A 126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVV---GGDNGRV 200 (376)
T ss_dssp EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEE---CCTTTEE
T ss_pred EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEE---EcCCCEE
Confidence 88877443332221223455444 3 7899999999999887765432211 122222 333333 3468899
Q ss_pred EEEEccCCceeeeeccCCc--------eeEEEEcC--CCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEE
Q 014007 242 RVEHYASKRTKFIMAHDSR--------IACFALTQ--DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAF 311 (432)
Q Consensus 242 ~i~d~~~~~~~~~~~~~~~--------i~~~~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~ 311 (432)
..+|..++...-......+ +..+...| .+..++.++.++. |..+|.++++.+..... .....+..
T Consensus 201 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~-l~~~d~~tG~~~w~~~~----~~~~~~~~ 275 (376)
T 3q7m_A 201 SAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGN-LTALDLRSGQIMWKREL----GSVNDFIV 275 (376)
T ss_dssp EEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSC-EEEEETTTCCEEEEECC----CCEEEEEE
T ss_pred EEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcE-EEEEECCCCcEEeeccC----CCCCCceE
Confidence 9999987655432211110 00011111 3456778888898 99999999998876652 23444444
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 312 SSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 312 s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
++..|+.++.++.|..+|..+++
T Consensus 276 --~~~~l~~~~~~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 276 --DGNRIYLVDQNDRVMALTIDGGV 298 (376)
T ss_dssp --ETTEEEEEETTCCEEEEETTTCC
T ss_pred --ECCEEEEEcCCCeEEEEECCCCc
Confidence 45677788889999999999887
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.26 E-value=3.9e-11 Score=108.34 Aligned_cols=227 Identities=8% Similarity=-0.012 Sum_probs=146.3
Q ss_pred EEEEcCCCCEEEEEc-----------CCcEEEEEcCCCeeEEEeecccCc----ceeEEEEeeeCCeEEEecCCC--CCC
Q 014007 90 HISFNQDHGCFAAGT-----------DHGFRIYNCDPFREIFRRDFERGG----GIGVVEMLFRCNILALVGGGP--DPQ 152 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~-----------~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~s~~~--d~~ 152 (432)
.+.++|||++|.++. ++.|.+||..+++......+.++. ...-..+.++|++..++.+.. .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~-- 146 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS-- 146 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS--
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC--
Confidence 699999999888775 344999999998876433331000 123456788999876665432 3
Q ss_pred CCCCeEEE--EeCCCCceeEEeecCCceEEEEEecCc--cEEE--eCCeEEEEEcCC-----CeeeE----EEeeccCCc
Q 014007 153 YPLNKVMI--WDDHQSRCIGELSFRSEVRSVKLRRDR--IIVV--LEQKIFVYNFAD-----LKLLH----QIETIANPK 217 (432)
Q Consensus 153 ~~~~~v~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~--~d~~i~i~d~~~-----~~~~~----~~~~~~~~~ 217 (432)
..|.+ +|+.+ +.++...+. ..+.|++ .+++ .|+.+.+.|+.+ ++... .+.....+.
T Consensus 147 ---~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~ 217 (368)
T 1mda_H 147 ---AAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA 217 (368)
T ss_dssp ---CEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE
T ss_pred ---CeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc
Confidence 67888 99877 455553222 1233444 3333 278888888876 44321 111122222
Q ss_pred ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee---ee-------cc---CCceeEEEEcCCCCEEEEEcC-C----
Q 014007 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF---IM-------AH---DSRIACFALTQDGQLLATSST-K---- 279 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~-------~~---~~~i~~~~~sp~~~~l~~~~~-d---- 279 (432)
. .+++..+++++ . +.+.+.|..+..... +. .+ ......++++|+++.++++.. .
T Consensus 218 ---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~ 289 (368)
T 1mda_H 218 ---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289 (368)
T ss_dssp ---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred ---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcc
Confidence 3 67777666554 4 899999986532211 11 01 112223789999998887643 2
Q ss_pred ----CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC-EEEEEe-CCCeEEEEEecCCCCCC
Q 014007 280 ----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSS-DKGTVHVFNLKVNSGSA 339 (432)
Q Consensus 280 ----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~ 339 (432)
+. +.++|+.+++.+..+..+ .....|+|+|||+ .+++.. .++.|.++|+.+++.++
T Consensus 290 ~~~~~~-~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 290 LAAAEN-TSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TSCEEE-EEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred cccCCC-EEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 35 679999999999988854 3689999999998 455555 59999999999988543
No 231
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.26 E-value=3.5e-10 Score=106.32 Aligned_cols=236 Identities=11% Similarity=0.055 Sum_probs=159.0
Q ss_pred CCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEee-e-CCeEEEecCCCCC-------------CCCCCe
Q 014007 95 QDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLF-R-CNILALVGGGPDP-------------QYPLNK 157 (432)
Q Consensus 95 ~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~~~s~~~d~-------------~~~~~~ 157 (432)
+||++|.+.. ++. |.+.|+++.+......+. .......+++ . |++.+++.++... .-..+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip--~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIP--NAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECS--SCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCC--CCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 4888887776 444 999999998876444554 3344666666 3 6766666553110 001268
Q ss_pred EEEEeCCCCceeEEeecCCceEEEEEecCccEEEe---C--------------------------------------CeE
Q 014007 158 VMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL---E--------------------------------------QKI 196 (432)
Q Consensus 158 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---d--------------------------------------~~i 196 (432)
+.+.|..+.+.+.++...+....++++|+|++++. + +.|
T Consensus 177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V 256 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 256 (595)
T ss_dssp EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence 99999999999998885456778889999887762 1 137
Q ss_pred EEEEcCC--Cee-eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc------------eeeeeccCCce
Q 014007 197 FVYNFAD--LKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR------------TKFIMAHDSRI 261 (432)
Q Consensus 197 ~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~------------~~~~~~~~~~i 261 (432)
.+.|.++ ++. +..+..... ...+.++|||++++++ +..+..|.++|+.+.. +.....-....
T Consensus 257 ~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~v~V~--~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP 333 (595)
T 1fwx_A 257 KVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVA--GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 333 (595)
T ss_dssp EEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSEEEEE--CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCE
T ss_pred EEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCEEEEe--CCCCCeEEEEECcccccccccccCcccceEEEcCCCCCc
Confidence 7777776 444 455554333 3479999999987654 4578999999998642 11112234567
Q ss_pred eEEEEcCCCCEEEEEcCCCceEEEEECCC----------CceEEEEEeCCCcC---ceEEEEECCCCCEEEEEeC---CC
Q 014007 262 ACFALTQDGQLLATSSTKGTLVRIFNTLD----------GTLLQEVRRGADRA---EIYSLAFSSNAQWLAVSSD---KG 325 (432)
Q Consensus 262 ~~~~~sp~~~~l~~~~~dg~~i~vwd~~~----------~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~~~~~---dg 325 (432)
..++|+|+|...++...|+. |.+||+.+ .+.+.++..+...+ .-..+.++|||++|++... |+
T Consensus 334 ~h~aF~~dG~aY~t~~ldsq-V~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 334 LHTAFDGRGNAYTSLFLDSQ-VVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEECTTSEEEEEETTTTE-EEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred ceEEECCCCeEEEEEecCCc-EEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 89999999955556777888 99999977 56777887542111 1122356899999998862 43
Q ss_pred e----------EEEEEecCCC
Q 014007 326 T----------VHVFNLKVNS 336 (432)
Q Consensus 326 ~----------i~iwd~~~~~ 336 (432)
. -.++|+..++
T Consensus 413 ~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCCCCSSCCEEEEEEECSSSS
T ss_pred cccCCCCCCCcceEEEcCCCc
Confidence 2 1889996555
No 232
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.25 E-value=3.6e-08 Score=85.55 Aligned_cols=228 Identities=7% Similarity=-0.054 Sum_probs=140.5
Q ss_pred CCEEEEEcCCcEEEEEcCCCeeEE---EeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007 97 HGCFAAGTDHGFRIYNCDPFREIF---RRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (432)
Q Consensus 97 ~~~l~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~ 172 (432)
|.+|..+..+.|+.++++...... ...+. ........++++++ +.++++.... +.|..++...+.....+
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISE-----PSIGRASLHGGEPTTII 74 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTT-----TEEEEEESSSCCCEEEE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCC-----CEEEEEecCCCCcEEEE
Confidence 345666665568888887543210 01111 12345678888874 4555555555 89999998765443333
Q ss_pred e-cCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 173 S-FRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 173 ~-~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
. ......++++++++. +.++ .+.|.++++........+.........+++++++..++++..+...+.|..++++
T Consensus 75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d 154 (267)
T 1npe_A 75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD 154 (267)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence 3 235788999998644 4333 5789999986432222222222344678999988888776533225788888887
Q ss_pred CCceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE-eCC
Q 014007 248 SKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS-SDK 324 (432)
Q Consensus 248 ~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~d 324 (432)
......+. ..-.....+++++++..|+.+. ..+. |.++|.........+... .....++.. +..|+.+ ...
T Consensus 155 g~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~-I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 155 GTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR-AECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp SCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred CCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE-EEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCC
Confidence 75444432 2334678999999876665544 4566 999998755443333321 334667764 4445444 467
Q ss_pred CeEEEEEecCCC
Q 014007 325 GTVHVFNLKVNS 336 (432)
Q Consensus 325 g~i~iwd~~~~~ 336 (432)
+.|.++|..+++
T Consensus 229 ~~v~~~d~~~g~ 240 (267)
T 1npe_A 229 NSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTTTE
T ss_pred CeEEEEeCCCCC
Confidence 899999998876
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.25 E-value=2.2e-08 Score=85.46 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=138.5
Q ss_pred eeEEEEeeeCCeEEEecCCC--CCCCCCCeEEEEeCCCCceeEEeecCC--ceEEEEEecCccEEEe--CCeEEEEEcCC
Q 014007 130 IGVVEMLFRCNILALVGGGP--DPQYPLNKVMIWDDHQSRCIGELSFRS--EVRSVKLRRDRIIVVL--EQKIFVYNFAD 203 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~--d~~~~~~~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~--d~~i~i~d~~~ 203 (432)
.....+.|++++.++++.+. + +.|+++|+.+++.+..+.... ....+++..+..+++. ++.+.++|..+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~-----s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t 95 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGR-----SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRT 95 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTT-----CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTT
T ss_pred CCcccEEEeCCCeEEEECCCCCC-----CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCC
Confidence 34578889886666665432 3 799999999999999887333 2345666644444443 88999999999
Q ss_pred CeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-eeeeec--cC---CceeEEEEcCCCCEEEEEc
Q 014007 204 LKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-TKFIMA--HD---SRIACFALTQDGQLLATSS 277 (432)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~~~--~~---~~i~~~~~sp~~~~l~~~~ 277 (432)
++.+.++... .+ ....++++++.++++. .++.|.++|..+.+ ...+.- +. ..++.+.|. +|...+...
T Consensus 96 ~~v~~~i~~g-~~-~g~glt~Dg~~l~vs~---gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 96 LSNIKNFTHQ-MK-DGWGLATDGKILYGSD---GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp TEEEEEEECC-SS-SCCEEEECSSSEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CcEEEEEECC-CC-CeEEEEECCCEEEEEC---CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 9999988654 12 2466888998887543 36899999998844 333331 11 236688887 776555555
Q ss_pred CCCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEE-EEeCCCeEEEEEecCCC
Q 014007 278 TKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLA-VSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 336 (432)
.++. |.+.|..+++.+..+.... .......|+|+|+++.|+ ++...+.|++.++....
T Consensus 170 ~~~~-V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 170 QTDC-IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp TSSE-EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred CCCe-EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 6677 9999999999999998521 013568999999987555 55578899999998754
No 234
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.21 E-value=1.4e-08 Score=99.92 Aligned_cols=231 Identities=8% Similarity=0.045 Sum_probs=147.0
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecc-cCc-ceeEEE-EeeeCCeEEEecCC-----CCCCCCCCeEEEEeCCCCc
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGG-GIGVVE-MLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~-~~~~~~~~~~~s~~-----~d~~~~~~~v~iwd~~~~~ 167 (432)
+..|++++ ++.|..+|..+++........ ... ...+.. .... ++..++... .+ +.|+.||..+|+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~~~~-----g~v~a~D~~tG~ 201 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVR-----GYITAYDAETGE 201 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCB-----CEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CCEEEEEecccccCCC-----CEEEEEECCCCc
Confidence 44566665 556999999988887655442 000 011111 1112 344444433 24 899999999999
Q ss_pred eeEEeec-CCc--------------------------------eEEEEEecCccEEEe---CC-----------------
Q 014007 168 CIGELSF-RSE--------------------------------VRSVKLRRDRIIVVL---EQ----------------- 194 (432)
Q Consensus 168 ~~~~~~~-~~~--------------------------------v~~~~~~~~~~~~~~---d~----------------- 194 (432)
.+..+.. ... ...+++++++..++. ++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~ 281 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLY 281 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCee
Confidence 9888762 111 124678887666552 22
Q ss_pred --eEEEEEcCCCeeeEEEeeccCC---------cceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eecc-----
Q 014007 195 --KIFVYNFADLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAH----- 257 (432)
Q Consensus 195 --~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~----- 257 (432)
.|..+|..+|+.+..++..... ...+....+|+..-++..++.+|.++++|..++++.. +...
T Consensus 282 ~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~ 361 (677)
T 1kb0_A 282 LASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA 361 (677)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred eEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc
Confidence 4999999999998877653221 1123333466321112234589999999998865432 1100
Q ss_pred ------CCce------------------------eEEEEcCCCCEEEEEcCC----------------------------
Q 014007 258 ------DSRI------------------------ACFALTQDGQLLATSSTK---------------------------- 279 (432)
Q Consensus 258 ------~~~i------------------------~~~~~sp~~~~l~~~~~d---------------------------- 279 (432)
..++ ..++|+|++.++++...+
T Consensus 362 ~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 441 (677)
T 1kb0_A 362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN 441 (677)
T ss_dssp EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred cccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccc
Confidence 0011 257889988888775431
Q ss_pred ---------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 280 ---------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 280 ---------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
+. |..||+.+++.+..+..+ .++....+..++.+++.++.||.+++||.++++.
T Consensus 442 ~g~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 442 TAKFFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CCEEECSSCCCSCCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cccccccccCCCCCccE-EEEEeCCCCcEEeecCCC---CCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 67 999999999999888743 3445556667888888999999999999999984
No 235
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.21 E-value=5.5e-09 Score=98.25 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=131.0
Q ss_pred CeEEEecC-CCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEE-e-cCccEEEeC---------------------
Q 014007 140 NILALVGG-GPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKL-R-RDRIIVVLE--------------------- 193 (432)
Q Consensus 140 ~~~~~~s~-~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~-~-~~~~~~~~d--------------------- 193 (432)
++.++... ..+ +.|.+.|+.+.++.+.+. ....+..+++ + |++.+++..
T Consensus 100 DG~~lfVnd~~~-----~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 100 DGRFLFMNDKAN-----TRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEETTT-----TEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred CCCEEEEEcCCC-----CEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 55554444 344 789999999999888555 4567889888 4 888777632
Q ss_pred CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC-----------------------------------
Q 014007 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK----------------------------------- 238 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d----------------------------------- 238 (432)
+.+.++|..+.+...++....+ -..++++|+|+.+++.+..+..
T Consensus 175 ~~vtvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i 253 (595)
T 1fwx_A 175 NVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL 253 (595)
T ss_dssp EEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred ceEEEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence 3799999999999888876553 4578899999988776633211
Q ss_pred CcEEEEEccC--Cce-eeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCc------------eEEEEEeCCC
Q 014007 239 GQVRVEHYAS--KRT-KFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGT------------LLQEVRRGAD 302 (432)
Q Consensus 239 ~~i~i~d~~~--~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~------------~~~~~~~~~~ 302 (432)
+.|.+.|.++ +.. .....-.....++.++|||+++++++. +.+ |.++|+.+.+ ....+..
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~-VsVid~~~~~~~~~~~l~~~~~v~~~v~v--- 329 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPT-VTVLDVTRFDAVFYENADPRSAVVAEPEL--- 329 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSB-EEEEEGGGHHHHHHSCCCGGGGEEECCBC---
T ss_pred CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCe-EEEEECcccccccccccCcccceEEEcCC---
Confidence 2466677665 222 112222345678999999998877664 556 9999998653 3444442
Q ss_pred cCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 303 RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 303 ~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
......++|+++|....+.-.|+.|.+||+.+
T Consensus 330 G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 330 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 25689999999994444555899999999987
No 236
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.20 E-value=1.8e-09 Score=96.90 Aligned_cols=215 Identities=13% Similarity=0.047 Sum_probs=137.6
Q ss_pred EEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007 91 ISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG 170 (432)
Q Consensus 91 ~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~ 170 (432)
..+..+|.+.+.+.+++|..|| .+++......+ ....+..+....++.+.++.. + |..+|. +++.+.
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~l~v~t~-------~-l~~~d~-~g~~~~ 91 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKS---GEIIECRPSIGKDGTIYFGSD-------K-VYAINP-DGTEKW 91 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCG---GGEEEECCEETTTTEECCSSC-------E-EEEECC-CGGGGG
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEec---CCCcccceEEecCCcEEEecC-------c-EEEECC-CCcEEE
Confidence 4555666655444477799999 66665533222 344456667777777666543 6 888985 676655
Q ss_pred Eeec-CCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 171 ELSF-RSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 171 ~~~~-~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
.+.. ........+. ++.+.+ + ++.|..+|.. ++...........+..+...+++. ++++ +.++.|..+|..
T Consensus 92 ~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vg---t~~~~l~~~d~~ 165 (330)
T 3hxj_A 92 RFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVG---SNDNYLYAINPD 165 (330)
T ss_dssp GSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEE---CTTSEEEEECTT
T ss_pred EEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEE---cCCCEEEEECCC
Confidence 5542 2222333344 555444 4 7899999987 777666655555555666666654 4443 357899999988
Q ss_pred CCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007 248 SKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
......+......+.++.+.+++.+++ ++ +. |..+| .+++.+..+.. ....+.++...++|.+ ..++.++.|
T Consensus 166 g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~-l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~l-~v~t~~~gl 237 (330)
T 3hxj_A 166 GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK-VYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGTI-YVTSLDGHL 237 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS-EEEEC-TTSCEEEEECC--SSCCCSCCEECTTSCE-EEEETTTEE
T ss_pred CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE-EEEEC-CCCcEEEEEcc--CCcceeceEECCCCeE-EEEcCCCeE
Confidence 433344544556677888888887554 44 66 99999 78887766653 2356788888888764 456667888
Q ss_pred EEEEe
Q 014007 328 HVFNL 332 (432)
Q Consensus 328 ~iwd~ 332 (432)
..+|.
T Consensus 238 ~~~~~ 242 (330)
T 3hxj_A 238 YAINP 242 (330)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88874
No 237
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=3.7e-08 Score=90.12 Aligned_cols=217 Identities=12% Similarity=0.075 Sum_probs=133.0
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecC
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFR 175 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~ 175 (432)
+..+.+++ ++.|..+|..+++......+. ... ....... ++..++. ..+ +.|..+|..+|+.+..+...
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~--~~~p~~~-~~~v~v~-~~~-----g~l~~~d~~tG~~~W~~~~~ 172 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEA--LSRPVVS-DGLVLIH-TSN-----GQLQALNEADGAVKWTVNLD 172 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECS-SCC--CSCCEEE-TTEEEEE-CTT-----SEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCC-Cce--EcCCEEE-CCEEEEE-cCC-----CeEEEEECCCCcEEEEEeCC
Confidence 34455554 566999999988877655543 111 1111222 3344433 334 89999999999998887743
Q ss_pred Cce------EEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCC----------c-ceEEEecCCCcEEEEeecC
Q 014007 176 SEV------RSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANP----------K-GLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 176 ~~v------~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~g~ 236 (432)
..+ ...... ++.+++ . ++.|..+|..+++.+......... + ....+ .+..+++. +
T Consensus 173 ~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~---~ 246 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFAL---A 246 (376)
T ss_dssp C-----CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEE---C
T ss_pred CCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEE---e
Confidence 333 222233 444444 3 789999999999887766532110 1 11111 23444443 3
Q ss_pred CCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007 237 QKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 237 ~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
.++.+..+|..+++..-... ......+.. ++..|+.++.++. |..+|..+++.+...... ....+..... .+.
T Consensus 247 ~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~--~~~~l~~~~~~g~-l~~~d~~tG~~~w~~~~~-~~~~~~~~~~--~~~ 319 (376)
T 3q7m_A 247 YNGNLTALDLRSGQIMWKRE-LGSVNDFIV--DGNRIYLVDQNDR-VMALTIDGGVTLWTQSDL-LHRLLTSPVL--YNG 319 (376)
T ss_dssp TTSCEEEEETTTCCEEEEEC-CCCEEEEEE--ETTEEEEEETTCC-EEEEETTTCCEEEEECTT-TTSCCCCCEE--ETT
T ss_pred cCcEEEEEECCCCcEEeecc-CCCCCCceE--ECCEEEEEcCCCe-EEEEECCCCcEEEeeccc-CCCcccCCEE--ECC
Confidence 68899999998866543222 223444444 4567888888888 999999999987766521 1122222333 346
Q ss_pred EEEEEeCCCeEEEEEecCCC
Q 014007 317 WLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~ 336 (432)
.|+.++.+|.|+++|..+++
T Consensus 320 ~l~v~~~~g~l~~~d~~tG~ 339 (376)
T 3q7m_A 320 NLVVGDSEGYLHWINVEDGR 339 (376)
T ss_dssp EEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCCeEEEEECCCCc
Confidence 78888899999999999987
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=2e-08 Score=99.06 Aligned_cols=236 Identities=11% Similarity=0.052 Sum_probs=144.5
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecc-cCc-ceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFE-RGG-GIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL 172 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~ 172 (432)
+..|++++ ++.|..+|..+++........ ... ...+.. .... ++..++..+....-.++.|+.||..+|+.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 34566666 556999999998887654432 000 011110 1111 445555432100001289999999999998877
Q ss_pred ec-C-C------------------------------ceEEEEEecCccEEEe---CC-------------------eEEE
Q 014007 173 SF-R-S------------------------------EVRSVKLRRDRIIVVL---EQ-------------------KIFV 198 (432)
Q Consensus 173 ~~-~-~------------------------------~v~~~~~~~~~~~~~~---d~-------------------~i~i 198 (432)
.. . . ....+++++++.+++. ++ .|..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 52 1 0 0125678886655552 33 3999
Q ss_pred EEcCCCeeeEEEeeccCC---------cceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--c----------
Q 014007 199 YNFADLKLLHQIETIANP---------KGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--H---------- 257 (432)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~---------- 257 (432)
+|.++|+.+..++..... .....+..+|+..-++..++.+|.++++|.+++++..-.. .
T Consensus 280 lD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~ 359 (689)
T 1yiq_A 280 VNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK 359 (689)
T ss_dssp EETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred EEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence 999999998877653221 1112223344321112235689999999998866531000 0
Q ss_pred -----------------CC-----------ceeEEEEcCCCCEEEEEcC-------------------------------
Q 014007 258 -----------------DS-----------RIACFALTQDGQLLATSST------------------------------- 278 (432)
Q Consensus 258 -----------------~~-----------~i~~~~~sp~~~~l~~~~~------------------------------- 278 (432)
.. .-..++|+|+..++++...
T Consensus 360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 439 (689)
T 1yiq_A 360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM 439 (689)
T ss_dssp TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence 00 0123788888887776532
Q ss_pred --------------CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 279 --------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 279 --------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
+|. |+.||+.+++.+..+..+ ..+....+...+.+++.++.||.|+.||.++++.
T Consensus 440 p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 440 PEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYV---TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp CSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred CcccccCCCCCCCccee-EEEEECCCCCeEeEccCC---CCccCccceECCCEEEEECCCCcEEEEECCCCcc
Confidence 377 999999999999888753 3333445566788899999999999999999984
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.15 E-value=6.7e-09 Score=93.08 Aligned_cols=262 Identities=14% Similarity=0.057 Sum_probs=161.0
Q ss_pred CCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007 86 PTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~ 165 (432)
..+.++...++|.++ +++.+ |..||. +++....... ........... ++...++. .+ +.|..+|..
T Consensus 60 ~~~~~~~~~~~g~l~-v~t~~-l~~~d~-~g~~~~~~~~---~~~~~~~~~~~-~~~l~v~t-~~-----~~l~~~d~~- 125 (330)
T 3hxj_A 60 IIECRPSIGKDGTIY-FGSDK-VYAINP-DGTEKWRFDT---KKAIVSDFTIF-EDILYVTS-MD-----GHLYAINTD- 125 (330)
T ss_dssp EEEECCEETTTTEEC-CSSCE-EEEECC-CGGGGGGSCC--------CCEEEE-TTEEEEEC-TT-----SEEEEECTT-
T ss_pred CcccceEEecCCcEE-EecCc-EEEECC-CCcEEEEEEC---CCCcccCceEE-CCEEEEEe-cC-----CEEEEEcCC-
Confidence 345677777777644 45544 777774 3332211111 11111112223 44444433 33 889999988
Q ss_pred CceeEEee-cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 166 SRCIGELS-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 166 ~~~~~~~~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
++.+..+. ....+.++...+++.+.+ . ++.|..+|.. ++.+..+......+..+.+..++. ++++ + +.|.
T Consensus 126 g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~---t--~~l~ 198 (330)
T 3hxj_A 126 GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFG---S--DKVY 198 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEE---S--SSEE
T ss_pred CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEE---e--CEEE
Confidence 77776666 445566777777777666 3 5899999988 877777665555566666666654 3332 2 7888
Q ss_pred EEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 243 VEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 243 i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.+|...............+.++...++|. |..++.++. |..+| .+++.+..+... ...+..+.+.+++. |..++
T Consensus 199 ~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g-l~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t 272 (330)
T 3hxj_A 199 AINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH-LYAIN-PDGTEKWRFKTG--KRIESSPVIGNTDT-IYFGS 272 (330)
T ss_dssp EECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE-EEEEC-TTSCEEEEEECS--SCCCSCCEECTTSC-EEEEC
T ss_pred EECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe-EEEEC-CCCCEeEEeeCC--CCccccceEcCCCe-EEEec
Confidence 99933344444444556688888888886 555666777 88887 567777666642 23344566665664 56777
Q ss_pred CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCC
Q 014007 323 DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDG 402 (432)
Q Consensus 323 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 402 (432)
.+|.|..+|. +++. +..+......+.++...++|+ |..++.+|
T Consensus 273 ~~ggl~~~d~-~g~~-----------------------------------~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G 315 (330)
T 3hxj_A 273 YDGHLYAINP-DGTE-----------------------------------KWNFETGSWIIATPVIDENGT-IYFGTRNG 315 (330)
T ss_dssp TTCEEEEECT-TSCE-----------------------------------EEEEECSSCCCSCCEECTTCC-EEEECTTS
T ss_pred CCCCEEEECC-CCcE-----------------------------------EEEEEcCCccccceEEcCCCE-EEEEcCCC
Confidence 8888999985 4441 112333445577777777765 56699999
Q ss_pred eEEEEEecC
Q 014007 403 SFYRCQFDP 411 (432)
Q Consensus 403 ~v~iw~~~~ 411 (432)
.+++...+.
T Consensus 316 ~~~~~~~~~ 324 (330)
T 3hxj_A 316 KFYALFNLE 324 (330)
T ss_dssp CEEEEEC--
T ss_pred eEEEEeccc
Confidence 999866543
No 240
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.11 E-value=2.1e-08 Score=84.46 Aligned_cols=202 Identities=14% Similarity=0.100 Sum_probs=132.6
Q ss_pred ceeEEeecCCce--EEEEEecCccEEEe---CC--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCC
Q 014007 167 RCIGELSFRSEV--RSVKLRRDRIIVVL---EQ--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKG 239 (432)
Q Consensus 167 ~~~~~~~~~~~v--~~~~~~~~~~~~~~---d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 239 (432)
+.+.++.|.... ..+.|+ ++.+..+ +| .|+++|+.+++.+..+.... ......+.++++.+++++ ..++
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~lt--w~~~ 107 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLT--WKNG 107 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEE--SSSS
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEE--eeCC
Confidence 456777765544 789998 5554443 33 89999999999998886543 333445666778887764 4689
Q ss_pred cEEEEEccCCce-eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCC
Q 014007 240 QVRVEHYASKRT-KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNA 315 (432)
Q Consensus 240 ~i~i~d~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~ 315 (432)
.+.+||..+.++ .++.. .. ....++++++.|+.+..++. |.++|..+.+.+..+...... ..++.+.|. +|
T Consensus 108 ~v~v~D~~t~~~~~ti~~-~~--eG~glt~dg~~L~~SdGs~~-i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G 182 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNY-DG--EGWGLTHNDQYLIMSDGTPV-LRFLDPESLTPVRTITVTAHGEELPELNELEWV-DG 182 (262)
T ss_dssp EEEEEETTTCCEEEEEEC-SS--CCCCEEECSSCEEECCSSSE-EEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEEECccCcEEEEEEC-CC--CceEEecCCCEEEEECCCCe-EEEEcCCCCeEEEEEEeccCCccccccceeEEE-CC
Confidence 999999988554 34432 22 22333457777777777777 999999999999888753211 235567886 78
Q ss_pred CEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEE
Q 014007 316 QWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTV 395 (432)
Q Consensus 316 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 395 (432)
+.++..-.++.|.+.|..+++.+..+... +..+.... .....+..+.+||+|+++.|
T Consensus 183 ~lyan~w~~~~I~vIDp~tG~V~~~Id~~----------------~L~~~~~~-------~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 183 EIFANVWQTNKIVRIDPETGKVTGIIDLN----------------GILAEAGP-------LPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp EEEEEETTSSEEEEECTTTCBEEEEEECT----------------TGGGGSCS-------CCSSCCCEEEEEEETTTTEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEECC----------------cCcccccc-------ccCcCCceEEEEEcCCCCEE
Confidence 76666667889999999999843322100 01110000 00112356899999998887
Q ss_pred EEEec
Q 014007 396 VILGM 400 (432)
Q Consensus 396 ~~~~~ 400 (432)
++.+.
T Consensus 240 fVTGK 244 (262)
T 3nol_A 240 FVTGK 244 (262)
T ss_dssp EEEET
T ss_pred EEECC
Confidence 77765
No 241
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.11 E-value=3e-11 Score=110.30 Aligned_cols=179 Identities=12% Similarity=-0.008 Sum_probs=98.9
Q ss_pred EEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE---eCCeEEEEEcCCCeeeEEEeeccC-Ccc
Q 014007 143 ALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV---LEQKIFVYNFADLKLLHQIETIAN-PKG 218 (432)
Q Consensus 143 ~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~-~~~ 218 (432)
.++.++.| +.|+.||..+|+.+..+.. +.+.+..+..++.+++ .|+.|+.||..+++.+..+..+.. .+.
T Consensus 11 ~v~~gs~d-----g~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 11 LLFVSTLD-----GSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp EEEEEETT-----SEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred EEEEEcCC-----CEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 34444455 9999999999999988876 5666555666664444 389999999998887666543211 111
Q ss_pred -eEEEecCCCcEEEEeecCCCCcEEEEEccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 219 -LCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 219 -~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
...+. .++.++ .|+.++.|+.||..+++.. .+..+. ...++|++..|++++.|+. |+.||.++|+.+..
T Consensus 85 ~sp~~~-~~~~v~---~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~-v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 85 ASPCRS-SDGILY---MGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYT-ITMYDTKTRELRWN 155 (369)
T ss_dssp TCSCC------CC---CCEEEEEEEEECCC--------------------------EEEEEEEEE-EECCCSSSSSCCCE
T ss_pred cCceEe-cCCEEE---EEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCE-EEEEECCCCCEEEe
Confidence 11111 233332 2346899999999886543 333322 2456678889999999999 99999999998776
Q ss_pred EEeCCCcCceEEEEECCCC---CEEEEEeCCCeEEEEEecCCCCCCC
Q 014007 297 VRRGADRAEIYSLAFSSNA---QWLAVSSDKGTVHVFNLKVNSGSAR 340 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 340 (432)
+.... .....++.+. ..+++++.||.|+.||..+++.+..
T Consensus 156 ~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 156 ATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp EEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred Eeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEE
Confidence 65321 2223344432 4567788899999999999885543
No 242
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.10 E-value=5.4e-07 Score=90.97 Aligned_cols=235 Identities=11% Similarity=0.133 Sum_probs=153.3
Q ss_pred eEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 88 LLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
|.++...++|.+.+...+++|..|+..+.+....... .....|.++....++.+.++... +.+.+||..+++
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~--~~~~~i~~i~~d~~g~lwigt~~------~Gl~~~~~~~~~ 246 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPI--LGTKQIQAILQQSPTRIWVATEG------AGLFLINPKTKE 246 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEEBS------SCEEEEETTTTE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCC--CCCCeeEEEEEcCCCCEEEEECC------CCeEEEeCCCCe
Confidence 8888888888776654456899999766554321111 23456778887777766665433 458899977665
Q ss_pred eeEEee--------cCCceEEEEEecCccEEE-eCCeEEEEEcCCCeeeEEEee-------ccCCcceEEEecCCCcEEE
Q 014007 168 CIGELS--------FRSEVRSVKLRRDRIIVV-LEQKIFVYNFADLKLLHQIET-------IANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 168 ~~~~~~--------~~~~v~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 231 (432)
...... ....|.++...++|.+.+ +++-|.+||..+++....... ....|..+....+|. +.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWi 325 (795)
T 4a2l_A 247 IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWL 325 (795)
T ss_dssp EEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEE
T ss_pred EEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEE
Confidence 433221 135699999988887665 566899999877654332211 123466666666654 444
Q ss_pred EeecCCCCcEEEEEccCCceeeeec-------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe-----
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIMA-------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR----- 299 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~----- 299 (432)
++ .++-|..++........+.. ....|.++...++|. |..|+.++. |..||..+++.......
T Consensus 326 gt---~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~G-l~~~~~~~~~~~~~~~~~~~~~ 400 (795)
T 4a2l_A 326 GT---YFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGG-LNLYNPITQRFTSYTLQEDESA 400 (795)
T ss_dssp EE---SSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSC-EEEECTTTCCEEEECCC-----
T ss_pred EE---CCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCC-eEEEcCCCCcEEEEecCCCCcc
Confidence 43 56788888877655444321 245699999998887 456777767 99999877665432211
Q ss_pred -CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 300 -GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 300 -~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
......|.++...++|+.|..|+.++-|.+||..+++
T Consensus 401 ~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 401 RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp -CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 0123579999998898856667777779999988765
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.08 E-value=6.2e-08 Score=81.64 Aligned_cols=189 Identities=12% Similarity=0.153 Sum_probs=128.7
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEE--EEEecCccEEEe--CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~--d~~i~ 197 (432)
..+..........+.|+. +.++.+.+.+ ....|+++|+.+++.+..+........ +++..+..+++. ++.+.
T Consensus 35 ~~~phd~~~ftqGL~~~~-~~LyestG~~---g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 35 HSYPHDTKAFTEGFFYRN-GYFYESTGLN---GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEECCTTCEEEEEEEET-TEEEEEEEET---TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEecCCCCcccceEEEEC-CEEEEECCCC---CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 344422334456788884 4555555543 013899999999999999885555544 555555555554 88999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeec--cC---CceeEEEEcCCCC
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQ 271 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~--~~---~~i~~~~~sp~~~ 271 (432)
+||..+.+.+.++.... ....++++++.+++. .| ++.|.++|..+.++ ..+.. .. ..++.+.|. +|+
T Consensus 111 v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~S-dG--s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMS-DG--TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEETTTCCEEEEEECSS---CCCCEEECSSCEEEC-CS--SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEECccCcEEEEEECCC---CceEEecCCCEEEEE-CC--CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999987643 335666788776543 23 57899999887443 33322 12 334567776 777
Q ss_pred EEEEEcCCCceEEEEECCCCceEEEEEeCCC----------cCceEEEEECCCCCEEEEEe
Q 014007 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----------RAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----------~~~i~~~~~s~~~~~l~~~~ 322 (432)
+.+..-.++. |.+.|.++++.+..+....- ....+.|+|+|+++.|++.+
T Consensus 184 lyan~w~~~~-I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 184 IFANVWQTNK-IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEEETTSSE-EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEEccCCe-EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 6655556777 99999999999999986311 13568999999888777666
No 244
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.07 E-value=4.8e-08 Score=82.28 Aligned_cols=163 Identities=8% Similarity=-0.041 Sum_probs=114.4
Q ss_pred ceeEEeecCCc--eEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEE
Q 014007 167 RCIGELSFRSE--VRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVR 242 (432)
Q Consensus 167 ~~~~~~~~~~~--v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 242 (432)
+.+.++.|... ...+.|+.+..++.. +|.|+++|+.+++.+..+ .. .......+.++++.+++++ ..++.+.
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~~Ly~lt--w~~~~v~ 119 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGERLYQLT--WTEGLLF 119 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSSCEEEEE--SSSCEEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCCEEEEEE--ccCCEEE
Confidence 45667776544 478888854334443 678999999999998887 33 3333444667788888764 4789999
Q ss_pred EEEccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCCCEE
Q 014007 243 VEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQWL 318 (432)
Q Consensus 243 i~d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 318 (432)
+||..+.++. ++.. ...-..++ ++++.|+.+..++. |.++|..+.+.+..+....+. ..++.+.|. +|+.+
T Consensus 120 V~D~~Tl~~~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~-l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly 194 (268)
T 3nok_A 120 TWSGMPPQRERTTRY-SGEGWGLC--YWNGKLVRSDGGTM-LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY 194 (268)
T ss_dssp EEETTTTEEEEEEEC-SSCCCCEE--EETTEEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEECCcCcEEEEEeC-CCceeEEe--cCCCEEEEECCCCE-EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE
Confidence 9999885443 4432 22223443 57888888777888 999999999999888753222 245678887 77766
Q ss_pred EEEeCCCeEEEEEecCCCCC
Q 014007 319 AVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 319 ~~~~~dg~i~iwd~~~~~~~ 338 (432)
+....++.|.+.|..+++.+
T Consensus 195 anvw~s~~I~vIDp~TG~V~ 214 (268)
T 3nok_A 195 ANIWHSSDVLEIDPATGTVV 214 (268)
T ss_dssp EEETTCSEEEEECTTTCBEE
T ss_pred EEECCCCeEEEEeCCCCcEE
Confidence 66657889999999998843
No 245
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.05 E-value=3e-07 Score=90.50 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=114.1
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcce-------e-EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc
Q 014007 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGI-------G-VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-------~-v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~ 167 (432)
++.+++++.++.|.-+|..+++.+........... . ...+....+ ..++ +..+ +.|..+|..+|+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v-~~~d-----g~l~alD~~tG~ 138 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGD-KVYV-GTLD-----GRLIALDAKTGK 138 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBT-EEEE-ECTT-----SEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECC-EEEE-EcCC-----CEEEEEECCCCC
Confidence 34444444455588888888887765544211000 0 011222333 3333 3345 899999999999
Q ss_pred eeEEeecC-----CceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeecc-CC-----------------
Q 014007 168 CIGELSFR-----SEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIA-NP----------------- 216 (432)
Q Consensus 168 ~~~~~~~~-----~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~-~~----------------- 216 (432)
.+..+... ..+.+--.-.++.+++. ++.|+.+|.++|+.+..+.... .+
T Consensus 139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~ 218 (668)
T 1kv9_A 139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (668)
T ss_dssp EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence 98887631 11211111124555552 4789999999999988775321 00
Q ss_pred -------------cceEEEecCCCcEEEEeecCCCC-------------------cEEEEEccCCceee-eec--cC---
Q 014007 217 -------------KGLCAVSQGVGSLVLVCPGLQKG-------------------QVRVEHYASKRTKF-IMA--HD--- 258 (432)
Q Consensus 217 -------------~~~~~~~~~~~~~~~~~~g~~d~-------------------~i~i~d~~~~~~~~-~~~--~~--- 258 (432)
...++++++.+.+++.+ .++ .|..+|.++++..- +.. |.
T Consensus 219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGT---GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccceeeeCCCCccccceEEcCCCCEEEEeC---CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 11357777777666554 223 48889988866542 221 22
Q ss_pred ----CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEE
Q 014007 259 ----SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVR 298 (432)
Q Consensus 259 ----~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~ 298 (432)
.++....+..+|+ .++.++.+|. ++++|..+|+.+..+.
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGF-FYVLDRTNGKLISAEK 341 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSE-EEEEETTTCCEEEEEE
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCE-EEEEECCCCCEecccc
Confidence 2222223334665 6889999999 9999999999986654
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.05 E-value=4e-07 Score=78.85 Aligned_cols=217 Identities=5% Similarity=-0.093 Sum_probs=136.7
Q ss_pred CCeEEEEEcCCCCEEEEEc--CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEe
Q 014007 86 PTLLHISFNQDHGCFAAGT--DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd 162 (432)
..+..++|++++..|..+. .+.|..++.+..... ..+. ........++++++ +.++++.... +.|.+++
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~-----~~I~~~~ 107 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--TIIR-QDLGSPEGIALDHLGRTIFWTDSQL-----DRIEVAK 107 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE--EEEC-TTCCCEEEEEEETTTTEEEEEETTT-----TEEEEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE--EEEE-CCCCCccEEEEEecCCeEEEEECCC-----CEEEEEE
Confidence 3568999999877666555 344999998765432 2221 22245678888874 5555555555 8999999
Q ss_pred CCCCceeEEee-cCCceEEEEEecC-ccEEEe-----CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEee
Q 014007 163 DHQSRCIGELS-FRSEVRSVKLRRD-RIIVVL-----EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCP 234 (432)
Q Consensus 163 ~~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~-----d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
........... .......++++++ +.+.++ .+.|..+++.. +....+. ........++++++++.++++.
T Consensus 108 ~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d- 185 (267)
T 1npe_A 108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVD- 185 (267)
T ss_dssp TTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEE-
T ss_pred cCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEE-
Confidence 76433222222 2256789999995 444443 25788888753 3333332 2223345789999988888765
Q ss_pred cCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCC
Q 014007 235 GLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSN 314 (432)
Q Consensus 235 g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~ 314 (432)
...+.|.++|.+......+.........++.. ++.++++....+. |.++|..+++.+..+..+. ......+++.|+
T Consensus 186 -~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~-v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 186 -AGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp -TTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTE-EEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred -CCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCe-EEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 34689999999875444433223344667664 4444444445567 9999999999988887431 124677888887
Q ss_pred CC
Q 014007 315 AQ 316 (432)
Q Consensus 315 ~~ 316 (432)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 247
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.04 E-value=4.4e-07 Score=87.44 Aligned_cols=193 Identities=10% Similarity=0.130 Sum_probs=113.0
Q ss_pred CCCEEEEEc-CCcEEEEEc-CCCeeEEEeecccCcce--------eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007 96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGGI--------GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 96 ~~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~ 165 (432)
++.+++.+. ++.|.-+|. .+++.+....+...... ....+....+ ..++. ..+ +.|..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~v~-~~d-----g~l~alD~~t 134 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAG-QIVKK-QAN-----GHLLALDAKT 134 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETT-EEEEE-CTT-----SEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECC-EEEEE-eCC-----CEEEEEECCC
Confidence 344444444 455888888 78877765544311100 0011223333 33333 334 8999999999
Q ss_pred CceeEEeecCC-----ceEE-EEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC---------------
Q 014007 166 SRCIGELSFRS-----EVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANP--------------- 216 (432)
Q Consensus 166 ~~~~~~~~~~~-----~v~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~--------------- 216 (432)
|+.+..+.... .+.+ ..+. ++.+++ . ++.|+.+|.++|+.+..+......
T Consensus 135 G~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~ 213 (571)
T 2ad6_A 135 GKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPH 213 (571)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred CCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccc
Confidence 99988876322 2221 1122 455554 2 579999999999988777543211
Q ss_pred -----------------------cceEEEecCCCcEEEEeecC----------CC----CcEEEEEccCCceee-ee--c
Q 014007 217 -----------------------KGLCAVSQGVGSLVLVCPGL----------QK----GQVRVEHYASKRTKF-IM--A 256 (432)
Q Consensus 217 -----------------------~~~~~~~~~~~~~~~~~~g~----------~d----~~i~i~d~~~~~~~~-~~--~ 256 (432)
...+++.++...+++.+ +. .+ +.|..+|.++++..- ++ .
T Consensus 214 ~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~-g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~ 292 (571)
T 2ad6_A 214 YGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGS-GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTP 292 (571)
T ss_dssp GCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESST
T ss_pred ccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEEC-CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCC
Confidence 01256666666666554 21 11 358889998866542 22 2
Q ss_pred cC--------CceeEEEEcCCCC---EEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 257 HD--------SRIACFALTQDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 257 ~~--------~~i~~~~~sp~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
|. .++ -+....+|+ .++.++.+|. ++++|..+|+.+..+..
T Consensus 293 ~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 293 HDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI-LYTLNRENGNLIVAEKV 344 (571)
T ss_dssp TCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred CcccccccCCCCE-EEecccCCcEEEEEEEeCCCcE-EEEEECCCCCEEeeecc
Confidence 21 111 122234774 6778899999 99999999999887764
No 248
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=99.02 E-value=2.8e-07 Score=82.30 Aligned_cols=236 Identities=9% Similarity=0.042 Sum_probs=147.8
Q ss_pred CeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeeccc----------------CcceeEEEEeeeC-CeEEEecCC
Q 014007 87 TLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFER----------------GGGIGVVEMLFRC-NILALVGGG 148 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~-~~~~~~s~~ 148 (432)
...+++|.++|+++.++. ++.|..|+.++........... ........+++.+ ++.++++..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 345678999998677776 4558888876544321111000 0113467888886 666666543
Q ss_pred CCCCCCCCeEEEEeCCCCceeEEee------cCCceEEEEEec-CccEEEeC--------------------CeEEEEEc
Q 014007 149 PDPQYPLNKVMIWDDHQSRCIGELS------FRSEVRSVKLRR-DRIIVVLE--------------------QKIFVYNF 201 (432)
Q Consensus 149 ~d~~~~~~~v~iwd~~~~~~~~~~~------~~~~v~~~~~~~-~~~~~~~d--------------------~~i~i~d~ 201 (432)
. +.|..+|..+++. ..+. .......+++.+ +|.+.++| +.|..||.
T Consensus 100 ~------~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 100 Y------YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp T------TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred C------CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 3 4588888765542 2221 123478899999 88776642 56888998
Q ss_pred CCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC---ceeeeeccCCceeEEEEcCCCCEEEEEcC
Q 014007 202 ADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK---RTKFIMAHDSRIACFALTQDGQLLATSST 278 (432)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~~ 278 (432)
.+++....... ......++++++++.++++- ...+.|.+|++... ....+....+ ...+++.++|+++++...
T Consensus 173 ~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLLLKE-LHVPGGAEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEEEEE-ESCCCEEEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeccC-CccCcceEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 76664333322 23345789999998777764 24688999998752 2222222233 788999999987766544
Q ss_pred ----------CCceEEEEECCCCceEEEEEeCCC--cCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 279 ----------KGTLVRIFNTLDGTLLQEVRRGAD--RAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 279 ----------dg~~i~vwd~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.+. |..+|. .++.+..+..... -..++.+++ .+++++++....+.|..+++....
T Consensus 249 ~~~~~~~~~~~~~-v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 249 ELDGNMHGRVDPK-GIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp ETTSSTTSCEEEE-EEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC----
T ss_pred cccccccCCCccE-EEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccccc
Confidence 456 888885 6888877764311 134667776 466666665678899999987543
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.01 E-value=3.9e-07 Score=76.77 Aligned_cols=179 Identities=9% Similarity=0.028 Sum_probs=124.7
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEE--EEEecCccEEEe--CCeEEEEEcCCC
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRS--VKLRRDRIIVVL--EQKIFVYNFADL 204 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~--d~~i~i~d~~~~ 204 (432)
......+.|+.+.++..++ .+ |.|+++|+++++.+..+ ....... +++..+..+++. ++.+.+||..+.
T Consensus 54 ~~ftqGL~~~~~~Ly~stG-~~-----g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl 126 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTG-HQ-----GTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPP 126 (268)
T ss_dssp TCCEEEEEEETTEEEEEET-TT-----TEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTT
T ss_pred ccccceEEEECCEEEEEcC-CC-----CEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcC
Confidence 3444677888655555544 44 78999999999998887 5555544 666555555555 899999999999
Q ss_pred eeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeee--ccCC---ceeEEEEcCCCCEEEEEcC
Q 014007 205 KLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIM--AHDS---RIACFALTQDGQLLATSST 278 (432)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~--~~~~---~i~~~~~sp~~~~l~~~~~ 278 (432)
+.+.++..... ...++++++.+++.. .++.|.++|..+.++ ..+. .+.. .++.+.|. +|++.+..-.
T Consensus 127 ~~~~ti~~~~e---GwGLt~Dg~~L~vSd---Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~ 199 (268)
T 3nok_A 127 QRERTTRYSGE---GWGLCYWNGKLVRSD---GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWH 199 (268)
T ss_dssp EEEEEEECSSC---CCCEEEETTEEEEEC---SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred cEEEEEeCCCc---eeEEecCCCEEEEEC---CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECC
Confidence 99999876433 345567787766543 378999999888443 3332 2222 34667776 7766655556
Q ss_pred CCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEe
Q 014007 279 KGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 279 dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~ 322 (432)
+.. |.+.|.++++.+..+.... .....+.|+|+|+++.|+..+
T Consensus 200 s~~-I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 200 SSD-VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CSE-EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCe-EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 677 9999999999999988531 113578999999766555544
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.99 E-value=1.2e-06 Score=73.28 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=129.2
Q ss_pred eecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceE--EEEEecCccEEEe--CCeEE
Q 014007 122 RDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVR--SVKLRRDRIIVVL--EQKIF 197 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~--d~~i~ 197 (432)
..++.........+.|+++.++..+|... ...|+.+|+.+++.+..+....... .+++..+..+++. ++.+.
T Consensus 13 ~~~phd~~~ftqGL~~~~~~LyestG~~g----~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 13 KRYPHDTTAFTEGLFYLRGHLYESTGETG----RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEECCTTCCEEEEEEETTEEEEEECCTT----SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEcCCCCccccccEEEECCEEEEECCCCC----CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 34442344556678888865555555431 1589999999999999988555544 3455544444444 89999
Q ss_pred EEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeec--cC---CceeEEEEcCCCC
Q 014007 198 VYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HD---SRIACFALTQDGQ 271 (432)
Q Consensus 198 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~--~~---~~i~~~~~sp~~~ 271 (432)
+||..+.+.+.++..... ...+.+++..+++.- | ++.|.++|..+..+ ..+.- +. ..++.+.+. +|+
T Consensus 89 v~D~~tl~~~~ti~~~~~---Gwglt~dg~~L~vSd-g--s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGE---GWALTSDDSHLYMSD-G--TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEETTTTEEEEEEECSSC---CCEEEECSSCEEEEC-S--SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEECCcCcEEEEEeCCCC---ceEEeeCCCEEEEEC-C--CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 999999999999876432 456668887776543 3 67899999888433 33322 22 234566665 776
Q ss_pred EEEEEcCCCceEEEEECCCCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEe
Q 014007 272 LLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~ 322 (432)
..+..-.+.. |.+.|.++++.+..+.... .....+.|+++|+++.|...+
T Consensus 162 lyanvw~s~~-I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSR-IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTE-EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCe-EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6655555667 9999999999999998531 113578999999877666665
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.97 E-value=3.9e-06 Score=84.67 Aligned_cols=236 Identities=10% Similarity=0.052 Sum_probs=152.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
...|.++...++|.+.+.. ++||.+|+..+.......... .-....|.++....++..-++... +-|..
T Consensus 262 ~~~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~------~Gl~~ 334 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWIGT-FNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYF------GGLNY 334 (795)
T ss_dssp CSBEEEEEECTTSCEEEEE-SSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESS------SCEEE
T ss_pred CCeEEEEEEcCCCCEEEEe-CChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECC------CCeEE
Confidence 4679999999998866554 449999997766543221110 113457888988888776665433 57888
Q ss_pred EeCCCCceeEEee--------cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEee--------ccCCcceEEE
Q 014007 161 WDDHQSRCIGELS--------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET--------IANPKGLCAV 222 (432)
Q Consensus 161 wd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~ 222 (432)
|+..++... .+. ....|.++...++|.+.+ + ++-|..||..+++....... ....|.++..
T Consensus 335 ~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 413 (795)
T 4a2l_A 335 YHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYV 413 (795)
T ss_dssp ECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEE
T ss_pred eCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEE
Confidence 886554422 222 245689999988887655 4 55899999876654322111 1244556666
Q ss_pred ecCCCcEEEEeecCCCCcEEEEEccCCceeeeec-----cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEE
Q 014007 223 SQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEV 297 (432)
Q Consensus 223 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~ 297 (432)
..++..+++++ .++.|.++|..++....+.. ....|.++...++|.+.+. +.+ . |.+||..+++.....
T Consensus 414 d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-G-l~~~~~~~~~~~~~~ 487 (795)
T 4a2l_A 414 DEKKSLVYIGT---HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-A-LVRFNPEQRSFTTIE 487 (795)
T ss_dssp ETTTTEEEEEE---TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-C-EEEEETTTTEEEECC
T ss_pred cCCCCEEEEEe---CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-c-eeEEeCCCCeEEEcc
Confidence 66654256554 45678999988876665542 3457999999988876554 444 4 899998776543321
Q ss_pred Ee----CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 298 RR----GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 298 ~~----~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.. ......|.++...++|++.+... +.|..||..+.+
T Consensus 488 ~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~ 528 (795)
T 4a2l_A 488 KEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLD 528 (795)
T ss_dssp BCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTE
T ss_pred ccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCe
Confidence 11 11235789999999998766554 458899987754
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.94 E-value=1.4e-06 Score=72.88 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=113.9
Q ss_pred ceeEEeecCC--ceEEEEEecCccEEEe----CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007 167 RCIGELSFRS--EVRSVKLRRDRIIVVL----EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 167 ~~~~~~~~~~--~v~~~~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (432)
+.+.++.|.. -...+.|+.+..+... .+.|+.+|+.+++.+..+...... ....+...++.++.++ ..++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~-fgeGi~~~~~~ly~lt--w~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY-FGAGIVAWRDRLIQLT--WRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC-CEEEEEEETTEEEEEE--SSSSE
T ss_pred EEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc-ceeEEEEeCCEEEEEE--eeCCE
Confidence 4566777654 4668999874333332 248999999999999888654433 3445556677887764 47899
Q ss_pred EEEEEccCCcee-eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCCCC
Q 014007 241 VRVEHYASKRTK-FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSNAQ 316 (432)
Q Consensus 241 i~i~d~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~~~ 316 (432)
+.+||..+.++. ++. ....-..++ ++++.|+.+..++. |.++|..+.+.+..+....+. ..++.+.|. +|+
T Consensus 87 v~v~D~~tl~~~~ti~-~~~~Gwglt--~dg~~L~vSdgs~~-l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFR-YPGEGWALT--SDDSHLYMSDGTAV-IRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEE-CSSCCCEEE--ECSSCEEEECSSSE-EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEe-CCCCceEEe--eCCCEEEEECCCCe-EEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 999999885443 443 223223444 57777777777888 999999999999888753221 245677775 777
Q ss_pred EEEEEeCCCeEEEEEecCCCCC
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.++..-.+..|.+.|..+++.+
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~ 183 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVV 183 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEE
T ss_pred EEEEECCCCeEEEEECCCCCEE
Confidence 6666657889999999999843
No 253
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.93 E-value=1.8e-06 Score=77.06 Aligned_cols=231 Identities=9% Similarity=0.014 Sum_probs=138.3
Q ss_pred EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee---------------------cCCceEEEEEec-CccE
Q 014007 132 VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS---------------------FRSEVRSVKLRR-DRII 189 (432)
Q Consensus 132 v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~---------------------~~~~v~~~~~~~-~~~~ 189 (432)
...+++++++..+.++..+ +.|..||..+++.. .+. ....+.++++.+ ++.+
T Consensus 21 p~~i~~d~~g~~l~v~~~~-----~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l 94 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQD-----GRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQL 94 (322)
T ss_dssp CCCEECCTTCSSEEEECTT-----SEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEE
T ss_pred ceEEEEcCCCCEEEEEcCC-----CeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcE
Confidence 4456677777644445555 89999987665432 222 013578899997 7776
Q ss_pred EEe--CCeEEEEEcCCCeeeEEEeec-----cCCcceEEEec-CCCcEEEEeec---------------CCCCcEEEEEc
Q 014007 190 VVL--EQKIFVYNFADLKLLHQIETI-----ANPKGLCAVSQ-GVGSLVLVCPG---------------LQKGQVRVEHY 246 (432)
Q Consensus 190 ~~~--d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~g---------------~~d~~i~i~d~ 246 (432)
++. .+.|..+|..+++. ..+... ......+++.+ +| .++++..+ ..++.|..+|.
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 664 45688888765532 222111 12345688888 76 45555322 12467888888
Q ss_pred cCCceeeeeccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCc--eEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007 247 ASKRTKFIMAHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGT--LLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323 (432)
Q Consensus 247 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 323 (432)
.++....+...-.....++++|+|++|+.+ ..++. |++|++.... ....+.. ..+ ...+++.++|+++++...
T Consensus 173 ~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 173 STKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEEEecC
Confidence 766555443333456789999999866555 55677 9999987531 1222322 123 788999999987666544
Q ss_pred ----------CCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecC----CCceEEEEc
Q 014007 324 ----------KGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVE----GSPYIVAFG 389 (432)
Q Consensus 324 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s 389 (432)
.+.|..+|.. ++. +..+..+. ..+..+++
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~-----------------------------------~~~~~~~~g~~~~~~~~~~~- 291 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNI-----------------------------------LEVIPLPPPFAGEHFEQIQE- 291 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCE-----------------------------------EEEEECCTTTTTSCCCEEEE-
T ss_pred cccccccCCCccEEEEECCC-CCE-----------------------------------EEEEECCCCCccccceEEEE-
Confidence 3567777653 331 11222222 24666766
Q ss_pred cCCCEEEEEecCCeEEEEEecC
Q 014007 390 HQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 390 ~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.++++.++....+.|.+++++.
T Consensus 292 ~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 292 HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTEEEEECSSCSEEEEEEC--
T ss_pred eCCEEEEeecCCCceEEEeccc
Confidence 4555555555678888877643
No 254
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.92 E-value=5.4e-06 Score=79.93 Aligned_cols=195 Identities=9% Similarity=0.110 Sum_probs=113.4
Q ss_pred CCCEEEEEcCCcEEEEEcCCCeeEEEeecccCccee------EEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCcee
Q 014007 96 DHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIG------VVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCI 169 (432)
Q Consensus 96 ~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~ 169 (432)
++.+++++..+.|.-+|..+++.+............ ...+....+..++.+ .+ +.|.-+|..+|+.+
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t--~d-----g~l~AlD~~TG~~~ 140 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT--LD-----ASVVALNKNTGKVV 140 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE--TT-----TEEEEEESSSCCEE
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe--CC-----CEEEEEECCCCCEE
Confidence 455445444455888888888877665543111100 011223333333333 34 89999999999998
Q ss_pred EEeecCC-----ceE-EEEEecC---c--cEEE-e-------CCeEEEEEcCCCeeeEEEeeccCC--------------
Q 014007 170 GELSFRS-----EVR-SVKLRRD---R--IIVV-L-------EQKIFVYNFADLKLLHQIETIANP-------------- 216 (432)
Q Consensus 170 ~~~~~~~-----~v~-~~~~~~~---~--~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~-------------- 216 (432)
..+.... .+. ...+..+ + .+++ . ++.|+.+|..+|+.+.........
T Consensus 141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~ 220 (582)
T 1flg_A 141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD 220 (582)
T ss_dssp EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence 8876221 121 1122222 2 3333 2 578999999999887665421000
Q ss_pred ---------------------------cceEEEecCCCcEEEEeecC----------C-------C----CcEEEEEccC
Q 014007 217 ---------------------------KGLCAVSQGVGSLVLVCPGL----------Q-------K----GQVRVEHYAS 248 (432)
Q Consensus 217 ---------------------------~~~~~~~~~~~~~~~~~~g~----------~-------d----~~i~i~d~~~ 248 (432)
-...++++..+.+++.+... . | +.|..+|.++
T Consensus 221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 01246667767676654210 1 2 6799999988
Q ss_pred Cceee-ee--ccC--------CceeEEEEc-CCCC---EEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 249 KRTKF-IM--AHD--------SRIACFALT-QDGQ---LLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 249 ~~~~~-~~--~~~--------~~i~~~~~s-p~~~---~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
++..- ++ .|. .++. +... .+|+ .++.++.+|. ++++|..+|+.+..+..
T Consensus 301 G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 301 GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGF-FYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCce-EEEEECCCCCEeccccc
Confidence 66543 22 232 1111 1221 4674 7888999999 99999999999887764
No 255
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.90 E-value=3.4e-06 Score=81.29 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=113.6
Q ss_pred CCCEEEEEc-CCcEEEEEc-CCCeeEEEeecccCcc-e-------eEEEEeeeC-CeE---EEecCCCCCCCCCCeEEEE
Q 014007 96 DHGCFAAGT-DHGFRIYNC-DPFREIFRRDFERGGG-I-------GVVEMLFRC-NIL---ALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 96 ~~~~l~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~-~-------~v~~~~~~~-~~~---~~~s~~~d~~~~~~~v~iw 161 (432)
++.+++++. ++.|.-+|. .+++.+.......... . ....+.+.+ ++. .++.+..+ +.|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~d-----g~l~Al 136 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLD-----GNVAAL 136 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTT-----SEEEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCC-----CEEEEE
Confidence 333333333 455778888 7777776554431110 0 011233321 222 12333345 899999
Q ss_pred eCCCCceeEEeecCC-----ceEE-EEEecCccEEE-e-------CCeEEEEEcCCCeeeEEEeeccCCc----------
Q 014007 162 DDHQSRCIGELSFRS-----EVRS-VKLRRDRIIVV-L-------EQKIFVYNFADLKLLHQIETIANPK---------- 217 (432)
Q Consensus 162 d~~~~~~~~~~~~~~-----~v~~-~~~~~~~~~~~-~-------d~~i~i~d~~~~~~~~~~~~~~~~~---------- 217 (432)
|..+|+.+....... .+.+ ..+ .++.+++ . ++.|+.+|.++|+.+..+.......
T Consensus 137 Da~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~ 215 (599)
T 1w6s_A 137 NAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (599)
T ss_dssp ETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred ECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccc
Confidence 999999988776322 2222 122 2555555 2 5799999999999887775432110
Q ss_pred ----------------------------ceEEEecCCCcEEEEeecCC--------------CCcEEEEEccCCceee-e
Q 014007 218 ----------------------------GLCAVSQGVGSLVLVCPGLQ--------------KGQVRVEHYASKRTKF-I 254 (432)
Q Consensus 218 ----------------------------~~~~~~~~~~~~~~~~~g~~--------------d~~i~i~d~~~~~~~~-~ 254 (432)
...++.+..+.+++.+ +.. .+.|..+|.++++..- +
T Consensus 216 ~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~-g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~ 294 (599)
T 1w6s_A 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT-GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY 294 (599)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC-CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred ccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC-CCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence 1245666766666554 311 2478889998876542 2
Q ss_pred e--ccCC--------ceeEEEEc-CCC---CEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 255 M--AHDS--------RIACFALT-QDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 255 ~--~~~~--------~i~~~~~s-p~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
+ .|.. ++. +... .+| ..++.++.+|. ++++|.++|+.+.....
T Consensus 295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~-l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGI-VYTLDRTDGALVSANKL 351 (599)
T ss_dssp ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSE-EEEEETTTCCEEEEEES
T ss_pred ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcE-EEEEECCCCCEeecccc
Confidence 2 2221 121 2222 467 56778899999 99999999999887763
No 256
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.86 E-value=2.2e-09 Score=97.85 Aligned_cols=218 Identities=11% Similarity=0.048 Sum_probs=112.0
Q ss_pred CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007 96 DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF 174 (432)
Q Consensus 96 ~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~ 174 (432)
++..+++++ ++.|+.||..+++....... ..+.+..+..++..+++++.| +.|+.||..+|+.+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~~~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNEGLTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC-----CCEEECTTT-----CCEEEC-----CCSEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEcCCCEEEEeCCC-----CEEEEEECCCCceeeeeec
Confidence 456677776 55699999999887754433 233333344566566666677 9999999999988766652
Q ss_pred C--CceE-EEEEecCccEEE--eCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007 175 R--SEVR-SVKLRRDRIIVV--LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (432)
Q Consensus 175 ~--~~v~-~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 249 (432)
. ..+. ...+..++.+++ .++.|+.||..+|+.+..+..+. ...++|+++.+++. +.++.|+.||.+++
T Consensus 78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~---~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLG---RTEYTITMYDTKTR 150 (369)
T ss_dssp CHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEE---EEEEEEECCCSSSS
T ss_pred cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEE---ecCCEEEEEECCCC
Confidence 1 1111 111112444333 37899999999999887765433 23456666655543 36799999999886
Q ss_pred cee-eeeccCCceeEEEEcCCC---CEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE-EEEECCCCCEEEE--Ee
Q 014007 250 RTK-FIMAHDSRIACFALTQDG---QLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY-SLAFSSNAQWLAV--SS 322 (432)
Q Consensus 250 ~~~-~~~~~~~~i~~~~~sp~~---~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~--~~ 322 (432)
... .+..+. .....+..+. ..+++++.+|. |+.||.++|+.+..+.. ..++. ...++++|...+. ..
T Consensus 151 ~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~-v~a~d~~tG~~~W~~~~---~~pv~~~~~~~~dg~~~v~~~~~ 224 (369)
T 2hz6_A 151 ELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGL-VVTVDSESGDVLWIQNY---ASPVVAFYVWQREGLRKVMHINV 224 (369)
T ss_dssp SCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCE-EEEECTTTCCEEEEEEC---SSCEEEEEECTTSSCEEECCEEE
T ss_pred CEEEeEeccc--ccCccccCCccccceEEEECCCCE-EEEEECCCCcEEEEecC---CCceEEEEEecCCceEeccceee
Confidence 542 222111 1223333332 45777888999 99999999999888773 24443 3456666653210 01
Q ss_pred CCCeEEEEEecCCC
Q 014007 323 DKGTVHVFNLKVNS 336 (432)
Q Consensus 323 ~dg~i~iwd~~~~~ 336 (432)
.++.++.+|..+++
T Consensus 225 ~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 225 AVETLRYLTFMSGE 238 (369)
T ss_dssp EHHHHHHHHHHHHH
T ss_pred cccceeeeehhcCC
Confidence 14456777776655
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.86 E-value=4.9e-06 Score=73.55 Aligned_cols=227 Identities=11% Similarity=0.024 Sum_probs=136.3
Q ss_pred CCeEEEEEcCCCCEEEEEcC-CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 86 PTLLHISFNQDHGCFAAGTD-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
.....++|+++|+++++... +.|..|+.+... . ..+. .......+++.+++.++++.... ....|..+|..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~--~~~~--~~~~p~gia~~~dG~l~vad~~~---~~~~v~~~d~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-Q--IHAT--VEGKVSGLAFTSNGDLVATGWNA---DSIPVVSLVKS 103 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-E--EEEE--CSSEEEEEEECTTSCEEEEEECT---TSCEEEEEECT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-E--EEEe--CCCCceeEEEcCCCcEEEEeccC---CcceEEEEcCC
Confidence 46788999999997776654 448888876532 2 2222 22457788899888766654321 00247777877
Q ss_pred CCceeEEee--cCCceEEEEEecCccEEEe---CCeEEEEEcCCCee-eEEEee-------ccCCcceEEEecCCCcEEE
Q 014007 165 QSRCIGELS--FRSEVRSVKLRRDRIIVVL---EQKIFVYNFADLKL-LHQIET-------IANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 165 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~---d~~i~i~d~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~ 231 (432)
+++...... .......++..+++..++. ++.|+++|...++. +..... .........++++++.+++
T Consensus 104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv 183 (306)
T 2p4o_A 104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYV 183 (306)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEE
T ss_pred CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEE
Confidence 776543333 2233455555566655553 57899999765431 111110 0011112223888887777
Q ss_pred EeecCCCCcEEEEEccC-Cce---eeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 232 VCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~-~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
+- ...+.|..|+++. +.+ ..+. .......++++++|+++++....+. |.++|. .++..........-...+
T Consensus 184 ~d--~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~-V~~~~~-~G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 184 SN--TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNS-VVRIAP-DRSTTIIAQAEQGVIGST 258 (306)
T ss_dssp EE--TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCC-EEEECT-TCCEEEEECGGGTCTTEE
T ss_pred Ee--CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCe-EEEECC-CCCEEEEeecccccCCce
Confidence 64 3578999999875 222 1221 1235678899999988777666778 999996 466533222111124689
Q ss_pred EEEEC---CCCCEEEEEeCCC
Q 014007 308 SLAFS---SNAQWLAVSSDKG 325 (432)
Q Consensus 308 ~~~~s---~~~~~l~~~~~dg 325 (432)
+++|. |+++.|+.++..+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 8887777666443
No 258
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.85 E-value=2.1e-06 Score=84.46 Aligned_cols=236 Identities=9% Similarity=0.042 Sum_probs=141.1
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCc-ceeEEE-EeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGG-GIGVVE-MLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~ 173 (432)
+..+++++ ++.|..+|..+++........... ...+.. .... ++..++.......-.++.|+.+|..+|+.+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 34555665 556999999998887665542000 011110 1112 4444544322000011899999999999988875
Q ss_pred c-C-Cc------------------------------eEEEEEecCccEEE--e-CC-------------------eEEEE
Q 014007 174 F-R-SE------------------------------VRSVKLRRDRIIVV--L-EQ-------------------KIFVY 199 (432)
Q Consensus 174 ~-~-~~------------------------------v~~~~~~~~~~~~~--~-d~-------------------~i~i~ 199 (432)
. . .+ ...+++.++...++ + ++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 2 1 10 12367777655554 2 33 49999
Q ss_pred EcCCCeeeEEEeeccC---------CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eeccC-----------
Q 014007 200 NFADLKLLHQIETIAN---------PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD----------- 258 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~----------- 258 (432)
|.++|+.+..++.... +.....+..+++..-++..++.+|.++++|..++++.. .....
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 9999999888765321 12223334466532122234689999999988865431 10000
Q ss_pred -Cc------------------------eeEEEEcCCCCEEEEE------------------------------------c
Q 014007 259 -SR------------------------IACFALTQDGQLLATS------------------------------------S 277 (432)
Q Consensus 259 -~~------------------------i~~~~~sp~~~~l~~~------------------------------------~ 277 (432)
.+ -..++++|+..+++.. .
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 00 0126777876665542 1
Q ss_pred CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 278 TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 278 ~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.+|. |..||+.+++.+..+..+ .......+...+.+++.++.||.|+.||.++++.
T Consensus 436 ~~g~-l~A~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 436 VSGA-LLAWDPVKQKAAWKVPYP---THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccce-EEEEeCCCCcEEEEccCC---CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 2377 999999999998888743 2333344445678888999999999999999884
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.83 E-value=4.8e-05 Score=67.45 Aligned_cols=174 Identities=8% Similarity=-0.012 Sum_probs=115.6
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEE-Ee---CCeEEEEEcCC---CeeeEE-EeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-VL---EQKIFVYNFAD---LKLLHQ-IETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~---~~~~~~-~~~~~~~~~~~~~~~~~~ 227 (432)
..|+..|+...+....+.....+.+++|++++..+ .+ ++.|+.+++.. +..... +.........+++++.++
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 57999999887766655556678899999865433 33 57899999875 122222 222223446789998888
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEcC-C-CceEEEEECCCCceEEEEEeCCCcC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~-d-g~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
.++++- ...+.|.+++++......+. ........++++|.+..|+.+.. . +. |..+++ +++....+... .-.
T Consensus 90 ~ly~~d--~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~-dG~~~~~~~~~-~~~ 164 (316)
T 1ijq_A 90 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGL-NGVDIYSLVTE-NIQ 164 (316)
T ss_dssp EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEET-TSCCEEEEECS-SCS
T ss_pred eEEEEE--CCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcC-CCCCeEEEEEC-CCC
Confidence 777654 35789999999876554443 23456789999996665555443 3 56 888886 45544444321 224
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
....+++++++..|+.+. ..+.|..+|+..
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 678999999877776665 567899999874
No 260
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.83 E-value=1.3e-06 Score=84.09 Aligned_cols=230 Identities=7% Similarity=-0.031 Sum_probs=137.9
Q ss_pred CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcce--eEEE-EeeeCCeEEEecCCC-----CCCCCCCeEEEEeCCCCc
Q 014007 97 HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGI--GVVE-MLFRCNILALVGGGP-----DPQYPLNKVMIWDDHQSR 167 (432)
Q Consensus 97 ~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~~~s~~~-----d~~~~~~~v~iwd~~~~~ 167 (432)
+..+++++ ++.+..+|..+++......+. .+.. .+.. .... ++..++.... + +.|+.+|..+|+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~-~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~-----g~v~a~D~~tG~ 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVC-DPKVGSTLTQAPFVA-KDTVLMGCSGAELGVR-----GAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEEECBCGGGTCC-----CEEEEEETTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCC-CCCccceeccCCEEE-CCEEEEEecCCccCCC-----CEEEEEECCCCc
Confidence 34555555 555999999888887665553 1110 1111 1112 3444554432 5 899999999999
Q ss_pred eeEEeecCCce---------------------------------------EEEEEecCccEEE-eC--------------
Q 014007 168 CIGELSFRSEV---------------------------------------RSVKLRRDRIIVV-LE-------------- 193 (432)
Q Consensus 168 ~~~~~~~~~~v---------------------------------------~~~~~~~~~~~~~-~d-------------- 193 (432)
.+.++...... ..+++.++...+. ..
T Consensus 188 ~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd 267 (571)
T 2ad6_A 188 LKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGD 267 (571)
T ss_dssp EEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSC
T ss_pred EEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCC
Confidence 98887632211 1245666433333 21
Q ss_pred ----CeEEEEEcCCCeeeEEEeeccC------Ccce---EEEecCCCcEEEEeecCCCCcEEEEEccCCceee-eeccC-
Q 014007 194 ----QKIFVYNFADLKLLHQIETIAN------PKGL---CAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD- 258 (432)
Q Consensus 194 ----~~i~i~d~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~- 258 (432)
+.|..+|.++++.+..++...+ .... +....+|+...++..+..+|.+.++|..++++.. .....
T Consensus 268 ~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~ 347 (571)
T 2ad6_A 268 NKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPA 347 (571)
T ss_dssp CTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTT
T ss_pred ceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCC
Confidence 2599999999998887764321 1111 2222456421112124578999999988765432 11100
Q ss_pred ------------Cce--------------------------eEEEEcCCCCEEEEEc-----------------------
Q 014007 259 ------------SRI--------------------------ACFALTQDGQLLATSS----------------------- 277 (432)
Q Consensus 259 ------------~~i--------------------------~~~~~sp~~~~l~~~~----------------------- 277 (432)
.++ ..++++|+..+|++..
T Consensus 348 ~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~ 427 (571)
T 2ad6_A 348 VNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGA 427 (571)
T ss_dssp CCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCE
T ss_pred ccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccc
Confidence 111 2467888777776653
Q ss_pred --------------CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 278 --------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.++. |..||+.+++.+.++... ..+....+...+..++.++.||.|+.||.++++.
T Consensus 428 ~~~~~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 428 TLAMYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEK---FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp EEEEEECTTSTTSCCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred cceeccCccccCCCCCCe-EEEEECCCCCEEEEecCC---CCccceeEEECCCEEEEEcCCCeEEEEECCCCCE
Confidence 2467 999999999998888743 2222222333456777789999999999999984
No 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.82 E-value=3.6e-05 Score=68.23 Aligned_cols=227 Identities=9% Similarity=-0.083 Sum_probs=141.1
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC----CceeEEee
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS 173 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~----~~~~~~~~ 173 (432)
+|+.+..+.|+..++++.+.. ..+. .......+.|++. +..+.+.... +.|..+++.. ......+.
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~--~~~~--~~~~p~g~~~d~~~~~ly~~D~~~-----~~I~~~~~~g~~~~~~~~~~~~ 73 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS 73 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCE--EEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEEC
T ss_pred EEEEECCCeEEEEECCCcceE--ehhc--CCCceEEEEEEeCCCEEEEEECCC-----CcEEEEECCCCCCCcccEEEEe
Confidence 577777778999998876543 2232 3445678888864 4555555555 8999999875 22222232
Q ss_pred -cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007 174 -FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (432)
Q Consensus 174 -~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 248 (432)
.-....++++.+. +.+.++ .+.|.++++........+.........++++|.+..++++-.+ ..+.|..++++.
T Consensus 74 ~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG 152 (316)
T 1ijq_A 74 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 152 (316)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS
T ss_pred CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC
Confidence 2245688999864 444343 5789999986443322233233445678999988877766422 237888888877
Q ss_pred Cceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCC
Q 014007 249 KRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 249 ~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
.....+. ..-.....+++++++..|+.+. ..+. |..+|+.. .....+... ........+++. .+.++.+-...+
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~-I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCe-EEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 5554443 2345678999998776665554 4556 99999864 333344321 112346778885 455555556778
Q ss_pred eEEEEEecCCCCC
Q 014007 326 TVHVFNLKVNSGS 338 (432)
Q Consensus 326 ~i~iwd~~~~~~~ 338 (432)
.|..++..+++.+
T Consensus 230 ~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 230 AIFSANRLTGSDV 242 (316)
T ss_dssp EEEEEETTTCCCC
T ss_pred eEEEEeCCCCcce
Confidence 9999998776643
No 262
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.81 E-value=5.1e-05 Score=68.28 Aligned_cols=239 Identities=8% Similarity=-0.036 Sum_probs=148.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
.+..+|.+..+ ..+|+.+..+.|+..+++..... ..+. .......++|++ ++.++.+.... +.|+.+++
T Consensus 33 ~d~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~--~~~~--~~~~~~~l~~d~~~~~ly~~D~~~-----~~I~r~~~ 102 (349)
T 3v64_C 33 PDRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANL 102 (349)
T ss_dssp TTSSCEEESSS-CCEEEEECBSCEEEECTTSCCEE--EEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEET
T ss_pred CCCCccccccc-CceeEeecccceEEEeCCCCeeE--Eeec--CCCceEEEEEeccccEEEEEeccC-----CceEEEec
Confidence 34556767666 45666676667888887655433 2222 334577888885 45555555445 89999998
Q ss_pred CCCceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC
Q 014007 164 HQSRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 164 ~~~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
..+.....+. ......++++.+. +.+..+ .+.|.+.++........+.........++++|.+..++++-.+ ..
T Consensus 103 ~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~-~~ 181 (349)
T 3v64_C 103 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NT 181 (349)
T ss_dssp TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECS-SS
T ss_pred CCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccC-CC
Confidence 7665433333 3345678999874 444343 5689999976433222222222344678999988877765422 23
Q ss_pred CcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007 239 GQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
+.|..++++......+. ..-.....++++|++..|+.+. ..+. |..+|+.... ...+... .......+++ ..+.
T Consensus 182 ~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~~~~P~giav-~~~~ 257 (349)
T 3v64_C 182 PRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSH-RKAVISQ-GLPHPFAITV-FEDS 257 (349)
T ss_dssp CEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCS-CEEEECS-SCSSEEEEEE-ETTE
T ss_pred CEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCE-EEEEeCCCCc-eEEEEeC-CCCCceEEEE-ECCE
Confidence 78999998875544443 2344578999998666665554 4566 9999976433 3333321 2245678888 3455
Q ss_pred EEEEEeCCCeEEEEEecCCCCC
Q 014007 317 WLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 317 ~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.+.+-...+.|..++..+++..
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~ 279 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQ 279 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSC
T ss_pred EEEecCCCCeEEEEEccCCCcc
Confidence 5555557788888886666543
No 263
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.81 E-value=1.5e-05 Score=70.43 Aligned_cols=189 Identities=7% Similarity=-0.053 Sum_probs=115.6
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeC---C--eEEEEEcCCC
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLE---Q--KIFVYNFADL 204 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d---~--~i~i~d~~~~ 204 (432)
.....+++++++.++++...+ +.|..||... +....+.....+.++++.+++++++++ + .|..+|..++
T Consensus 32 ~~pegia~~~~g~lyv~d~~~-----~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g 105 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEV-----GEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 105 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTT-----TEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCC-----CeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC
Confidence 456678888888777776555 8999999654 444445556678999999999877653 2 3777787777
Q ss_pred eeeEEEeeccC-CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee--e---------ccCCceeEEEEcCCCCE
Q 014007 205 KLLHQIETIAN-PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI--M---------AHDSRIACFALTQDGQL 272 (432)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~---------~~~~~i~~~~~sp~~~~ 272 (432)
+.......... ....++..+ +..++++ ...++.|.++|......... . ..-.....+ +|++++
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~-~~~~~v~--d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 106 TVETLLTLPDAIFLNGITPLS-DTQYLTA--DSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp CEEEEEECTTCSCEEEEEESS-SSEEEEE--ETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred eEEEEEeCCCccccCcccccC-CCcEEEE--ECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 65433322111 112233333 3334433 23468888888765321111 0 111234455 788876
Q ss_pred EEEEc-CCCceEEEEECCC-Cce--EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEec
Q 014007 273 LATSS-TKGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 273 l~~~~-~dg~~i~vwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~ 333 (432)
|+.+. ..+. |+.||+.. ++. ...+... .....++++++|+++++....+.|.++|..
T Consensus 181 lyv~d~~~~~-I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 181 LYVSNTEKML-LLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEEEETTTTE-EEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEEeCCCCE-EEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 65554 4566 99999864 332 2222211 245678999999877776677889999864
No 264
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=2.7e-05 Score=71.11 Aligned_cols=237 Identities=7% Similarity=-0.045 Sum_probs=146.7
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~ 165 (432)
.-.|.+..+ ..+|+.+..+.|+.++++..... .... .......++|++ ++.++.+.... +.|+.++...
T Consensus 78 ~~~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~--~~~~--~~~~~~gl~~d~~~~~ly~~D~~~-----~~I~r~~~~g 147 (386)
T 3v65_B 78 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYT--LLLN--NLENAIALDFHHRRELVFWSDVTL-----DRILRANLNG 147 (386)
T ss_dssp SSCEEECSS-CCEEEEECBSCEEEECTTSCCCE--EEEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTS
T ss_pred CCeECCccc-cceeEeecCccceeeccCCCcEE--EEec--CCCccEEEEEecCCCeEEEEeCCC-----CcEEEEecCC
Confidence 345655555 45666676677888888765433 2222 334577888885 45555555555 8999999876
Q ss_pred CceeEEee-cCCceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCc
Q 014007 166 SRCIGELS-FRSEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQ 240 (432)
Q Consensus 166 ~~~~~~~~-~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 240 (432)
+.....+. .......+++.+. +.+.++ .+.|.+.++........+.........++++|.+..++++-.+ ..+.
T Consensus 148 ~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~-~~~~ 226 (386)
T 3v65_B 148 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG-NTPR 226 (386)
T ss_dssp CCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS-SSCE
T ss_pred CCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC-CCCE
Confidence 65433333 3345678899875 443333 5688888876433222222222344678999988887766422 2378
Q ss_pred EEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEE
Q 014007 241 VRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWL 318 (432)
Q Consensus 241 i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 318 (432)
|..++++......+. ..-.....|+|+|++..|+.+ ...+. |..+|+..... ..+... .......|++ ..+.++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~-I~~~d~dG~~~-~~~~~~-~~~~P~giav-~~~~ly 302 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHV-IERANLDGSHR-KAVISQ-GLPHPFAITV-FEDSLY 302 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTE-EEEECTTSCSC-EEEECS-SCSSEEEEEE-ETTEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCE-EEEEeCCCCee-EEEEEC-CCCCceEEEE-ECCEEE
Confidence 888998875554443 334457899999866655554 44566 99999754333 333321 2245678888 345555
Q ss_pred EEEeCCCeEEEEEecCCCCC
Q 014007 319 AVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 319 ~~~~~dg~i~iwd~~~~~~~ 338 (432)
.+-...+.|..++..+++..
T Consensus 303 ~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEETTTTEEEEEETTTCCSC
T ss_pred EeeCCCCeEEEEECCCCcce
Confidence 56667888998886666543
No 265
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=1.8e-05 Score=79.65 Aligned_cols=235 Identities=11% Similarity=0.043 Sum_probs=144.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc----cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE----RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMI 160 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~i 160 (432)
...|.++...++|.+.+... +++.+|+..+.+........ ......|.++....++.+.++... +-|.+
T Consensus 210 ~~~i~~i~~d~~g~lwigt~-~Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~------~Gl~~ 282 (781)
T 3v9f_A 210 GNDVRCIYKDTNGNIWIGTS-KGLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATEL------NGIMI 282 (781)
T ss_dssp CSSEEEEEECTTCCEEEEET-TEEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESS------SCEEE
T ss_pred CCceeEEEEcCCCCEEEEeC-CcHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCC------CCeEE
Confidence 35799999999888766554 49999997665433111100 012456888888888776665543 46888
Q ss_pred EeCCCCceeEEe--------------e-cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEee----------c
Q 014007 161 WDDHQSRCIGEL--------------S-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET----------I 213 (432)
Q Consensus 161 wd~~~~~~~~~~--------------~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~----------~ 213 (432)
+|..+++..... . ....|.++...++|.+-+ + ++-|..++..+.... .+.. .
T Consensus 283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLS 361 (781)
T ss_dssp EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCS
T ss_pred ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcce-eeccCccccccCCCC
Confidence 887765432111 0 245689999888876555 5 778999987654322 2211 1
Q ss_pred cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee----ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC
Q 014007 214 ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL 289 (432)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~ 289 (432)
...|.++....++ .+++++ .++-|..||..++....+. .....|.++...++|.+. .|+.++. |..+|..
T Consensus 362 ~~~v~~i~~d~~g-~lWigt---~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~G-l~~~~~~ 435 (781)
T 3v9f_A 362 NKVVSSVCDDGQG-KLWIGT---DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGN-ISYYNTR 435 (781)
T ss_dssp SSCEEEEEECTTS-CEEEEE---BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEE-EEEECSS
T ss_pred CcceEEEEEcCCC-CEEEEe---CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCC-EEEEcCC
Confidence 2345555555554 355543 4567888988765443331 234678999988888754 5666666 9999987
Q ss_pred CCceEEEEEe-CCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 290 DGTLLQEVRR-GADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 290 ~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+++.. .+.. ......|.++...++|.+.+ |+. +.|..||..+++
T Consensus 436 ~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 436 LKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKK 480 (781)
T ss_dssp SCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSS
T ss_pred CCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCe
Confidence 76543 2321 11235799999988887555 444 568899987765
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.79 E-value=3.4e-05 Score=70.46 Aligned_cols=174 Identities=10% Similarity=-0.009 Sum_probs=114.9
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
..|+.+++..............+.+++|.+.+. ++.+ .+.|+.+++........+.........+++.+.++.+++
T Consensus 96 ~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~ 175 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 175 (386)
T ss_dssp SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEE
T ss_pred ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEE
Confidence 578888887666555555556788999997544 4444 578999998765443333322334457899988888877
Q ss_pred EeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-CC-CceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TK-GTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~d-g~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
+- ...+.|.+.+++......+. ..-.....++++|.+..|+... .. +. |..+++... ....+... .-.....
T Consensus 176 ~d--~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~-I~r~~~dG~-~~~~~~~~-~~~~PnG 250 (386)
T 3v65_B 176 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGS-GRRIIADT-HLFWPNG 250 (386)
T ss_dssp EE--TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-SCEEEECS-SCSCEEE
T ss_pred Ec--CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCE-EEEEeCCCC-CcEEEEEC-CCCCeee
Confidence 64 34678888888775544433 3335678999998766555544 34 56 888887543 33333321 2245789
Q ss_pred EEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 309 LAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 309 ~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
|+|+|++..|+.+. ..+.|..+|+..
T Consensus 251 lavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 251 LTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 99998777666654 567899988764
No 267
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.76 E-value=5.8e-05 Score=67.92 Aligned_cols=174 Identities=11% Similarity=-0.005 Sum_probs=113.9
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEE
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVL 231 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (432)
..|+..++........+.....+.+++|++....+. + .+.|+.+++........+.........+++.+.++.+++
T Consensus 53 ~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~ 132 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 132 (349)
T ss_dssp SCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEE
T ss_pred cceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEE
Confidence 568888876655544444556688999997544444 4 578999998765433333322233457899988888877
Q ss_pred EeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEE-cCC-CceEEEEECCCCceEEEEEeCCCcCceEE
Q 014007 232 VCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATS-STK-GTLVRIFNTLDGTLLQEVRRGADRAEIYS 308 (432)
Q Consensus 232 ~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~d-g~~i~vwd~~~~~~~~~~~~~~~~~~i~~ 308 (432)
+- ...+.|.+.+++......+. ..-.....++++|.+..|+.. ... +. |..+++... ....+... .-.....
T Consensus 133 ~d--~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~dG~-~~~~~~~~-~~~~PnG 207 (349)
T 3v64_C 133 TD--SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMDGS-GRRIIADT-HLFWPNG 207 (349)
T ss_dssp EE--TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSC-SCEESCCS-SCSCEEE
T ss_pred Ec--CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCCCC-CcEEEEEC-CCCCcce
Confidence 64 34678999998876544443 334567899999965555444 444 66 888887543 33333211 2245789
Q ss_pred EEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 309 LAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 309 ~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
|+++|++..|..+. ..+.|..+|+..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 99998777666654 567899998864
No 268
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.75 E-value=5.9e-05 Score=69.21 Aligned_cols=229 Identities=9% Similarity=-0.072 Sum_probs=143.1
Q ss_pred CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEe
Q 014007 98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL 172 (432)
Q Consensus 98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~ 172 (432)
.+|+.+..+.|+..+++...... ... ....+..++|++ ++.++.+.... +.|+.+++... .....+
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~--~~~--~~~~~~~l~~d~~~~~lywsD~~~-----~~I~~~~~~g~~~~~~~~~~~ 154 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTS--LIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI 154 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEE--EEC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC------CCCEEEE
T ss_pred ceeEEeccceeEEEccCCcceeE--ecc--ccCcceEEeeeeccCceEEEecCC-----CeEEEEEcccCCCCCcceEEE
Confidence 46777777779888887654432 222 445678888886 44455554444 88999997652 222233
Q ss_pred e-cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 173 S-FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 173 ~-~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
. ......++++.+ .+.+..+ .+.|.+.++........+.........+++.|.+..++++-.+ ..+.|...+++
T Consensus 155 ~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~d 233 (400)
T 3p5b_L 155 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN 233 (400)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETT
T ss_pred eCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCC
Confidence 3 445678899987 4444444 5689999986544333333333345679999988877765433 45789999988
Q ss_pred CCceeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007 248 SKRTKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 248 ~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
......+. ..-.....|++++++..|+.+. ..+. |..+|+........+.....-.....+++. .+.++.+-...+
T Consensus 234 G~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~-I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 234 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred CCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE-EEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 76555443 3335788999998777666654 4556 999998644333333321112345677773 344555556778
Q ss_pred eEEEEEecCCCCC
Q 014007 326 TVHVFNLKVNSGS 338 (432)
Q Consensus 326 ~i~iwd~~~~~~~ 338 (432)
.|..+|..+++.+
T Consensus 312 ~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 312 AIFSANRLTGSDV 324 (400)
T ss_dssp SEEEEESSSCCCC
T ss_pred eEEEEEcCCCCce
Confidence 8999997777643
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.74 E-value=2.3e-05 Score=75.52 Aligned_cols=228 Identities=7% Similarity=0.007 Sum_probs=135.1
Q ss_pred EEEEc-CCcEEEEEcCCCeeEEEeecccCcc--eeEEE-EeeeCCeEEEecCC-----CCCCCCCCeEEEEeCCCCceeE
Q 014007 100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGG--IGVVE-MLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIG 170 (432)
Q Consensus 100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~~~s~~-----~d~~~~~~~v~iwd~~~~~~~~ 170 (432)
|++++ ++.|.-+|..+++......+. .+. ..+.. .... ++..++..+ .+ +.|+.+|..+|+.+.
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~-~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~-----g~v~A~D~~TG~~~W 196 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENS-DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVR-----GYLTAYDVKTGEQVW 196 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECC-CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCC-----CEEEEEETTTCCEEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCC-CCCccceeecCCEEE-CCEEEEEecccccCCC-----CeEEEEECCCCcEEE
Confidence 55665 555888998888887665543 111 01111 1112 345555443 25 899999999999988
Q ss_pred EeecCCce---------------------------------------EEEEEecCccEEE--e-C---------------
Q 014007 171 ELSFRSEV---------------------------------------RSVKLRRDRIIVV--L-E--------------- 193 (432)
Q Consensus 171 ~~~~~~~v---------------------------------------~~~~~~~~~~~~~--~-d--------------- 193 (432)
.+....+. ..+++.++..+++ + +
T Consensus 197 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y 276 (599)
T 1w6s_A 197 RAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKW 276 (599)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccc
Confidence 87732211 1245555544443 2 2
Q ss_pred -CeEEEEEcCCCeeeEEEeeccCCc------ce-EEEe---cCCCcEEEEeecCCCCcEEEEEccCCceeeeec------
Q 014007 194 -QKIFVYNFADLKLLHQIETIANPK------GL-CAVS---QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA------ 256 (432)
Q Consensus 194 -~~i~i~d~~~~~~~~~~~~~~~~~------~~-~~~~---~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~------ 256 (432)
+.|..+|.++|+.+..++...... .. +.+. .+|+..-++..++.+|.+.++|.+++++..-..
T Consensus 277 ~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 277 TMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN 356 (599)
T ss_dssp SSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred cceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcc
Confidence 379999999999988776543211 11 2222 455422222234589999999988865432111
Q ss_pred --------cCCce--------------------------eEEEEcCCCCEEEEEc-------------------------
Q 014007 257 --------HDSRI--------------------------ACFALTQDGQLLATSS------------------------- 277 (432)
Q Consensus 257 --------~~~~i--------------------------~~~~~sp~~~~l~~~~------------------------- 277 (432)
...++ ..++++|+..++++..
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 00111 2456777666554421
Q ss_pred --------------CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 278 --------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 278 --------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
.+|. |.-||+.+++.+...... .+...-.+...+.+++.++.||.|+.||.++++.+
T Consensus 437 ~~~~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~l 507 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL 507 (599)
T ss_dssp EEEECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred eeccCCcCCcccCCCcCe-EEEEECCCCCEEeEecCC---CCccCcceEecCCEEEEECCCCeEEEEECCCCCEE
Confidence 3467 999999999998887642 22221112235667777999999999999999843
No 270
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.67 E-value=0.00014 Score=62.78 Aligned_cols=231 Identities=14% Similarity=0.183 Sum_probs=153.3
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEee-eCCeEEEecCCCCCCCCCCeEEEEeCCC-Cc
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SR 167 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~ 167 (432)
+.-.+|..+.+|.-....++|||+++........+ ...|.-+.| +++...+++. ..|+-|++.. ..
T Consensus 71 sAIMnP~~~ViALrag~~LQiFnletK~klks~~~----~e~VvfWkWis~~~L~lVT~--------taVyHWs~~~~s~ 138 (365)
T 2xzh_A 71 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQ 138 (365)
T ss_dssp EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC----SSCEEEEEECSSSEEEEEES--------SEEEEEESSTTCC
T ss_pred eeeeCCCccEEEEecCCeEEEechHHhhhhcceec----CCccEEEEecCCCeEEEEcC--------CcEEEEcccCCCC
Confidence 34568999988888766699999998887744444 357777887 5567778876 6899999874 35
Q ss_pred eeEEee-c----CCceEEEEEecCccEEEe----------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCC--CcE-
Q 014007 168 CIGELS-F----RSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGV--GSL- 229 (432)
Q Consensus 168 ~~~~~~-~----~~~v~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 229 (432)
+++.+. | ...|..-..+++.++++. .|.+.+|..+. +.-+.+++|......+.+.-+. ..+
T Consensus 139 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 139 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEE
Confidence 666665 2 456777778888887762 57889999765 3445566654433222221111 112
Q ss_pred EEEeecCCCCcEEEEEccCCc---------e-eeee---ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 230 VLVCPGLQKGQVRVEHYASKR---------T-KFIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~---------~-~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
.++.-+...+.+++.++.... . ..+. ...+-.-++..++.-..+..-+.-|. |++||+.++.++..
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~-ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM 296 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcE-EEEEEcccCcEEEE
Confidence 222222223688888885421 0 1111 12344567888887778888899999 99999999999988
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
-+-. ...|..-+-+....-++.....|.|.--.++...
T Consensus 297 nrIS--~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 297 NRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EECC--SSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTT
T ss_pred eccC--CCceEEecccCCCCcEEEEcCCCEEEEEEECccc
Confidence 7753 3566666665554556666689988888887765
No 271
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.67 E-value=2.5e-05 Score=75.30 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=85.9
Q ss_pred CeEEEEEcCCCeeeEEEeeccCC------cc-eEEEe---cCCCcEEEEeecCCCCcEEEEEccCCceee-eeccC----
Q 014007 194 QKIFVYNFADLKLLHQIETIANP------KG-LCAVS---QGVGSLVLVCPGLQKGQVRVEHYASKRTKF-IMAHD---- 258 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~------~~-~~~~~---~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~---- 258 (432)
+.|..+|..+|+.+..++..... .. .+.+. .+|+..-++..++.+|.++++|..++++.. +....
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 370 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc
Confidence 47999999999998877642211 11 12222 356532222234689999999988755421 11110
Q ss_pred ---------Cc--------------------------------eeEEEEcCCCCEEEEEc--------------------
Q 014007 259 ---------SR--------------------------------IACFALTQDGQLLATSS-------------------- 277 (432)
Q Consensus 259 ---------~~--------------------------------i~~~~~sp~~~~l~~~~-------------------- 277 (432)
.+ -..++++|+..++++..
T Consensus 371 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T 1flg_A 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCce
Confidence 00 01356677655555432
Q ss_pred -------------CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCC
Q 014007 278 -------------TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSG 337 (432)
Q Consensus 278 -------------~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 337 (432)
.+|. |.-||+.+++.+.+.... .++..-.....+.+++.++.||.|+.||.++++.
T Consensus 451 ~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 451 LGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp CCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred eccceeecCCCCCCcce-EEEEECCCCCEEEEecCC---CCCcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence 2577 999999999998887743 2222211222466777899999999999999984
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.66 E-value=7e-05 Score=63.43 Aligned_cols=198 Identities=11% Similarity=0.108 Sum_probs=128.9
Q ss_pred eecccCcceeEEEEeeeCCe-EEEecCCCCCCCCCCeEEEEeCCCCceeEEeec--CCceEEEEEecCccEEEe---CCe
Q 014007 122 RDFERGGGIGVVEMLFRCNI-LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF--RSEVRSVKLRRDRIIVVL---EQK 195 (432)
Q Consensus 122 ~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~---d~~ 195 (432)
+.+. +-...+..++++++. .+++..+.+ +.|...|.. ++.++.+.. .....+|++.+++.++++ ++.
T Consensus 20 ~~l~-g~~~~lSGla~~~~~~~L~aV~d~~-----~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 20 KEIA-GITNNISSLTWSAQSNTLFSTINKP-----AAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA 92 (255)
T ss_dssp EECT-TCCSCEEEEEEETTTTEEEEEEETT-----EEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred eECC-CcccCcceeEEeCCCCEEEEEECCC-----CeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence 3454 444578899999753 445545556 899999987 888888863 367889999999988664 568
Q ss_pred EEEEEcCCCee---eEEEee------ccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC----Cceeeee-------
Q 014007 196 IFVYNFADLKL---LHQIET------IANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS----KRTKFIM------- 255 (432)
Q Consensus 196 i~i~d~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~----~~~~~~~------- 255 (432)
+.++++..... +..... .......+++++.++.++++. +.....+|.++. ..+..+.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~---E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFK---EKNPIEVYKVNGLLSSNELHISKDKALQRQ 169 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEE---ESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEE---CcCCceEEEEcccccCCceeeecchhhccc
Confidence 99998765432 222221 122346799999998888765 223344555442 1222221
Q ss_pred ccCCceeEEEEcCCC-CEEEEEcCCCceEEEEECCCCceEEEEEeCCC-------cCceEEEEECCCCCEEEEEeCCCeE
Q 014007 256 AHDSRIACFALTQDG-QLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD-------RAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~-~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
.+-..+.+++++|.. ++++....... |.++|. +++.+..+..... -...-.|+|.++|++ +..++.+.+
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~~s~~-L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~ 246 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSHESRA-LQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRF 246 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEETTTTE-EEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEE
T ss_pred cccCCceeEEEcCCCCeEEEEECCCCe-EEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceE
Confidence 123467899999955 45555555555 889985 5777766664310 125689999999984 455777877
Q ss_pred EEEEe
Q 014007 328 HVFNL 332 (432)
Q Consensus 328 ~iwd~ 332 (432)
+.|.-
T Consensus 247 y~f~~ 251 (255)
T 3qqz_A 247 YRFTP 251 (255)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77654
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=5.9e-05 Score=75.92 Aligned_cols=237 Identities=12% Similarity=0.012 Sum_probs=147.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEee------cccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 84 PPPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRD------FERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
....|.++...++|.+.+...++||..|+........... ...-....|.++....++.+.++... +-
T Consensus 311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~------~G 384 (781)
T 3v9f_A 311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDG------GG 384 (781)
T ss_dssp SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBS------SC
T ss_pred CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCC------Cc
Confidence 3567999999999987665558889999876443221110 01113356888888876665554322 56
Q ss_pred EEEEeCCCCceeEEe---e-cCCceEEEEEecCccEEE-e-CCeEEEEEcCCCeeeEEEee---ccCCcceEEEecCCCc
Q 014007 158 VMIWDDHQSRCIGEL---S-FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADLKLLHQIET---IANPKGLCAVSQGVGS 228 (432)
Q Consensus 158 v~iwd~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 228 (432)
|..||..++...... . ....|.++...+++.+.+ + ++.|..+|..+++.. .+.. ....+.++....++ .
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g-~ 462 (781)
T 3v9f_A 385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK-K 462 (781)
T ss_dssp EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS-E
T ss_pred EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC-C
Confidence 888997655332211 1 346789998887777665 4 478999998776543 2221 22345555555544 3
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeecc------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC--
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-- 300 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-- 300 (432)
+++++ . +.|..+|..++....+... ...|.++...++|.+.+ |+.++. |..||..+++. ..+...
T Consensus 463 lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~G-l~~~~~~~~~~-~~~~~~~~ 535 (781)
T 3v9f_A 463 IWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGG-VGIYTPDMQLV-RKFNQYEG 535 (781)
T ss_dssp EEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSC-EEEECTTCCEE-EEECTTTT
T ss_pred EEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCC-EEEEeCCCCeE-EEccCCCC
Confidence 44443 3 5688899887655444321 35789999999987554 555444 88899766543 334311
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.....|.++...++|.+.++. .+|.|..||..+.+
T Consensus 536 l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 536 FCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD 570 (781)
T ss_dssp CSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred CCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence 123568999999998866554 46655888877654
No 274
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.65 E-value=7.2e-05 Score=66.25 Aligned_cols=228 Identities=10% Similarity=-0.025 Sum_probs=140.3
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeE-Eee-cC
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIG-ELS-FR 175 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~-~~~-~~ 175 (432)
+|+.+..+.|+.++++.........+. .......+.|++. +.++.+.... +.|..++...+.... .+. .-
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~-----~~I~r~~~~g~~~~~~~~~~~l 78 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSGL 78 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTT-----TEEEEEETTSSSCCCEEEEECC
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCC-----CcEEEEEccCCCceEEEEcCCC
Confidence 566676677999998765322112222 3345678888863 4455554444 899999987663222 222 33
Q ss_pred CceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 176 SEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 176 ~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
....++++.+. +.+..+ .+.|.++++........+.........+++.|.+..++++-.+ ..+.|..++++....
T Consensus 79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSR 157 (318)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCe
Confidence 56778999874 444444 5689999976432222222233344678999987777765422 467888888887554
Q ss_pred eeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 252 KFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 252 ~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
..+. ..-.....++++|++..|+.+. ..+. |..+|+.. .....+... .......+++.. +.++.+-...+.|..
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~-I~~~d~dG-~~~~~~~~~-~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDG-TNRQAVVKG-SLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTS-CSCEEEECS-CCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEECCCCE-EEEEcCCC-CceEEEecC-CCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 4432 2334578999999766665554 4566 99999754 333334321 224567788753 344555557789999
Q ss_pred EEecCCCCC
Q 014007 330 FNLKVNSGS 338 (432)
Q Consensus 330 wd~~~~~~~ 338 (432)
++..+++..
T Consensus 234 ~~~~~G~~~ 242 (318)
T 3sov_A 234 CNKYTGEGL 242 (318)
T ss_dssp EETTTCCSC
T ss_pred EECCCCCce
Confidence 998777643
No 275
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.65 E-value=0.00015 Score=62.59 Aligned_cols=257 Identities=10% Similarity=0.123 Sum_probs=164.3
Q ss_pred EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc
Q 014007 108 FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 187 (432)
Q Consensus 108 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~ 187 (432)
|.|.|+.......++.+. -...+. +|....++--. . ..+.++|+++.+.++.+.....|.--.|-.+.
T Consensus 51 VvIiDl~n~~~~~Rrpi~--AdsAIM----nP~~~ViALra-g-----~~LQiFnletK~klks~~~~e~VvfWkWis~~ 118 (365)
T 2xzh_A 51 VVIIDMNDPSNPIRRPIS--ADSAIM----NPASKVIALKA-G-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN 118 (365)
T ss_dssp EEEEETTSTTSCEEEECC--CSEEEE----CSSSSEEEEEE-T-----TEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred EEEEECCCCCCccccccc--cceeee----CCCccEEEEec-C-----CeEEEechHHhhhhcceecCCccEEEEecCCC
Confidence 888898776655444443 333332 44444333322 2 79999999999999999988899888887665
Q ss_pred cEEE-eCCeEEEEEcCC-CeeeEEEeeccC--Ccce--EEEecCCCcEEEEeec----CCCCcEEEEEccCCceeeeecc
Q 014007 188 IIVV-LEQKIFVYNFAD-LKLLHQIETIAN--PKGL--CAVSQGVGSLVLVCPG----LQKGQVRVEHYASKRTKFIMAH 257 (432)
Q Consensus 188 ~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~g----~~d~~i~i~d~~~~~~~~~~~~ 257 (432)
.+.. ++..|+-|++.. ..+.+.+.-|.. .... ...+++.+.+++..-. .-.|.+.+|..+.+..+.+.+|
T Consensus 119 ~L~lVT~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGh 198 (365)
T 2xzh_A 119 TVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGH 198 (365)
T ss_dssp EEEEEESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCS
T ss_pred eEEEEcCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccceeeee
Confidence 5544 799999999975 345555554432 2233 3445566655543211 1347889999998888888888
Q ss_pred CCceeEEEEcCC---CCEEEEEcCC---CceEEEEECCCC--------ceEEEEEeC--CCcCceEEEEECCCCCEEEEE
Q 014007 258 DSRIACFALTQD---GQLLATSSTK---GTLVRIFNTLDG--------TLLQEVRRG--ADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 258 ~~~i~~~~~sp~---~~~l~~~~~d---g~~i~vwd~~~~--------~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~ 321 (432)
...-..+.+.-+ ..+++.+... +. ++|-++... +....+... ...+-..++..|+.-..+..-
T Consensus 199 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-LhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyvi 277 (365)
T 2xzh_A 199 AASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI 277 (365)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEE-EEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEE
Confidence 766554444221 1233333321 46 889888432 111111111 123456778888888889999
Q ss_pred eCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecC
Q 014007 322 SDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMD 401 (432)
Q Consensus 322 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 401 (432)
+.-|.|++||++++.+ +..-+...+.|...+-.....=++.....
T Consensus 278 TK~G~ihlyDleTgt~-----------------------------------i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~ 322 (365)
T 2xzh_A 278 TKYGYIHLYDLETGTC-----------------------------------IYMNRISGETIFVTAPHEATAGIIGVNRK 322 (365)
T ss_dssp ETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEEEEGGGTEEEEEETT
T ss_pred eCCcEEEEEEcccCcE-----------------------------------EEEeccCCCceEEecccCCCCcEEEEcCC
Confidence 9999999999999984 33344455566666655555566667788
Q ss_pred CeEEEEEecCC
Q 014007 402 GSFYRCQFDPV 412 (432)
Q Consensus 402 g~v~iw~~~~~ 412 (432)
|.|.--.+|..
T Consensus 323 GqVl~v~v~~~ 333 (365)
T 2xzh_A 323 GQVLSVCVEEE 333 (365)
T ss_dssp CEEEEEEECTT
T ss_pred CEEEEEEECcc
Confidence 88877666553
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.62 E-value=0.00029 Score=64.58 Aligned_cols=175 Identities=7% Similarity=-0.047 Sum_probs=115.9
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCC----eeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
..|+..++........+.....+.+++|++....++ + .+.|+.+++... .....+.........+++.+.++
T Consensus 92 ~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~ 171 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171 (400)
T ss_dssp TEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTT
T ss_pred ceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCC
Confidence 688999987766555555667889999998544443 3 578999988652 12222222333445789998777
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-C-CCceEEEEECCCCceEEEEEeCCCcC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-T-KGTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~-dg~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
.++++- ...+.|.+.+++......+. ..-.....|+++|.+.+|+... . .+. |...++... ....+... .-.
T Consensus 172 ~lY~~d--~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~dG~-~~~~~~~~-~l~ 246 (400)
T 3p5b_L 172 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNGV-DIYSLVTE-NIQ 246 (400)
T ss_dssp EEEEEE--TTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETTSC-SCEEEECS-SCS
T ss_pred ceEEEE--CCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCCCC-ccEEEEEC-CCC
Confidence 877654 35688999999886655443 3345578999999666665544 2 367 999997543 33333321 225
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEecCC
Q 014007 305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN 335 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 335 (432)
....|++++++..|+.+. ..+.|..+|+...
T Consensus 247 ~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 247 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 679999998877777665 5678999998653
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=9.4e-05 Score=68.56 Aligned_cols=148 Identities=11% Similarity=0.043 Sum_probs=91.0
Q ss_pred EEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEE-EeCC-------eEEEEEcC
Q 014007 132 VVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIV-VLEQ-------KIFVYNFA 202 (432)
Q Consensus 132 v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~d~-------~i~i~d~~ 202 (432)
...++++| +...|...+.. +.|+.+|+..+..............+++++++..+ ++|. .+..++.
T Consensus 139 P~~lavdp~~~g~Lyv~d~~-----~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~- 212 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQ-----HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR- 212 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBT-----EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred CCEEEECCCCCCeEEEEeCC-----CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence 35677786 23333333333 68999998776654444456678899999999844 4432 3444443
Q ss_pred CCeee--EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeec--cCCceeEEEEcCCCCEEEEE-c
Q 014007 203 DLKLL--HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA--HDSRIACFALTQDGQLLATS-S 277 (432)
Q Consensus 203 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~-~ 277 (432)
.+... ..+.. ......++++|+...++++- ..++.|..++........+.. .......++|+|+|++|+.+ .
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d--~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPINGELYFNS--WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEE--TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred CCceeeeeeecc-CCCceEEEEeCCCCEEEEEE--CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 33222 23332 23345788999655666553 356889999988765533322 22457899999999955554 4
Q ss_pred CCCceEEEEECC
Q 014007 278 TKGTLVRIFNTL 289 (432)
Q Consensus 278 ~dg~~i~vwd~~ 289 (432)
..+. |+.++..
T Consensus 290 ~~~~-I~~~~~d 300 (430)
T 3tc9_A 290 NQHY-ILRSDYD 300 (430)
T ss_dssp TTTE-EEEEEEE
T ss_pred CCCE-EEEEeCC
Confidence 5566 9988764
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.58 E-value=3.4e-06 Score=83.08 Aligned_cols=239 Identities=7% Similarity=-0.060 Sum_probs=127.6
Q ss_pred EEEEcC-CCCEEEEEcC-C-----------cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCC
Q 014007 90 HISFNQ-DHGCFAAGTD-H-----------GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLN 156 (432)
Q Consensus 90 ~~~~s~-~~~~l~~~~~-~-----------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~ 156 (432)
++++.+ ++++++.|+. . .+.+||..+.+......+...+.......++..++.+++.|+.+ ..
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~----~~ 265 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND----AK 265 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS----TT
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC----CC
Confidence 556677 8888887752 1 27888887665432223321222333345556666666666633 16
Q ss_pred eEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC---------CeEEEEEcCCCeeeEEE----eeccCCcceEE
Q 014007 157 KVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE---------QKIFVYNFADLKLLHQI----ETIANPKGLCA 221 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~----~~~~~~~~~~~ 221 (432)
.+.+||..+++-... +.....-.+++..+++++++.. ..+.+||..+.+-...- ...........
T Consensus 266 ~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 266 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence 899999887643322 2222223455666677777643 35899999876532210 00000000111
Q ss_pred EecCCCcEEEEeecC--------CCCcEEEEEccCCceee-eeccC---------CceeEEEEc-CCCCEEEEEcCCC--
Q 014007 222 VSQGVGSLVLVCPGL--------QKGQVRVEHYASKRTKF-IMAHD---------SRIACFALT-QDGQLLATSSTKG-- 280 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~--------~d~~i~i~d~~~~~~~~-~~~~~---------~~i~~~~~s-p~~~~l~~~~~dg-- 280 (432)
+..++ .+++. +|. ....+..||..+..-.. ...+. ..-.++.|. .++++++.|+.++
T Consensus 346 ~~~~~-~iyv~-Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 346 YRSDN-HAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GTTTC-SCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred eecCC-ceEEE-ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 11222 22222 221 23456778877643221 11111 122344444 3788888888542
Q ss_pred ---------ceEEEEECCCCceEEEE--EeCCCcCceEEEEECCCCCEEEEEeCC-----------CeEEEEEecCCC
Q 014007 281 ---------TLVRIFNTLDGTLLQEV--RRGADRAEIYSLAFSSNAQWLAVSSDK-----------GTVHVFNLKVNS 336 (432)
Q Consensus 281 ---------~~i~vwd~~~~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~ 336 (432)
. |.+||..+.+..... ... ....-.++...|+|++++.|+.+ ..+.+||..+.+
T Consensus 424 ~~~~~~~~~~-v~~yd~~~~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 424 DSDATTNAHI-ITLGEPGTSPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp SSBCCCCEEE-EECCSTTSCCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred CCCcCCcceE-EEcCCCCCCCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 5 788888776654332 111 11123455667899999998854 468888887754
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.56 E-value=0.00022 Score=70.98 Aligned_cols=229 Identities=9% Similarity=-0.074 Sum_probs=140.2
Q ss_pred CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCC----ceeEEe
Q 014007 98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQS----RCIGEL 172 (432)
Q Consensus 98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~----~~~~~~ 172 (432)
.+|+.+....|+..+++..... .... ....+..++++. ++.++++.... +.|+.+++... .....+
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~--~l~~--~~~~~~gl~~d~~~~~lY~sD~~~-----~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCE--EEEC--SCSSEEEEEEETTTTEEEEEETTT-----TEEEEEEC--------CEEEE
T ss_pred cccccccccceeEeeccCCcce--eeec--CCCceEEEeecccCCeeEEeeccc-----eeEEEEeccCCCCCcceeEEE
Confidence 3666666677888887655433 2222 345567888876 44555555545 78999998653 222333
Q ss_pred e-cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc
Q 014007 173 S-FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA 247 (432)
Q Consensus 173 ~-~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 247 (432)
. ......+|++.+.+..|+ + .+.|.+.++........+.........+++.|....+|++-.| ..+.|.+.+++
T Consensus 467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~d 545 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLN 545 (791)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETT
T ss_pred ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecC
Confidence 3 345677899997664444 3 5789999986544333333333445689999988888776433 34789999988
Q ss_pred CCceeeeec-cCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC
Q 014007 248 SKRTKFIMA-HDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 248 ~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
......+.. .-.....|++++.+..|+.+. .... |..+|+........+.....-.....|++.. ++++++-...+
T Consensus 546 G~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~-I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~ 623 (791)
T 3m0c_C 546 GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINE 623 (791)
T ss_dssp SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTT
T ss_pred CCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc-EEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCC
Confidence 866555443 335788999998666666554 4456 9999985544443333211123456777633 33444444678
Q ss_pred eEEEEEecCCCCC
Q 014007 326 TVHVFNLKVNSGS 338 (432)
Q Consensus 326 ~i~iwd~~~~~~~ 338 (432)
.|...|..+++.+
T Consensus 624 ~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 624 AIFSANRLTGSDV 636 (791)
T ss_dssp EEEEEETTTCCCC
T ss_pred EEEEEeCCCCcce
Confidence 8888887776543
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.53 E-value=0.00018 Score=60.95 Aligned_cols=197 Identities=6% Similarity=0.039 Sum_probs=122.4
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCe
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNK 157 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~ 157 (432)
.+.+-.+.+..++|+|++..|.+.. +.+ |...|.. ++......+. .....-.+++.+++.++++...+ +.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~--g~~D~EGIa~~~~g~~~vs~E~~-----~~ 92 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD--FVKDLETIEYIGDNQFVISDERD-----YA 92 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECS--SCSSEEEEEECSTTEEEEEETTT-----TE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC--CCCChHHeEEeCCCEEEEEECCC-----Cc
Confidence 3444556799999999877665544 433 7667766 4443223332 33556677788888887776666 88
Q ss_pred EEEEeCCCCce---eEEee-------cCCceEEEEEecCccEEE-e--CC--eEEEEEc-CCCeeeEEEee-------cc
Q 014007 158 VMIWDDHQSRC---IGELS-------FRSEVRSVKLRRDRIIVV-L--EQ--KIFVYNF-ADLKLLHQIET-------IA 214 (432)
Q Consensus 158 v~iwd~~~~~~---~~~~~-------~~~~v~~~~~~~~~~~~~-~--d~--~i~i~d~-~~~~~~~~~~~-------~~ 214 (432)
+.++++..... +.... .+....+++|++++..+. + .. .|+.|+- .....+..+.. ..
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccccc
Confidence 99998765442 22222 234468999999874443 2 22 4555541 11112222211 12
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccC---------CceeEEEEcCCCCEEEEEcCCCceEEE
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHD---------SRIACFALTQDGQLLATSSTKGTLVRI 285 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~~i~v 285 (432)
.....++++|...++++.+ .....+..+|.....+..+.-.. .....|+|.++|++. ..++.+. +++
T Consensus 173 ~d~S~l~~dp~tg~lliLS--~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~-~y~ 248 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLS--HESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNR-FYR 248 (255)
T ss_dssp SCCCEEEEETTTTEEEEEE--TTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTE-EEE
T ss_pred CCceeEEEcCCCCeEEEEE--CCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCce-EEE
Confidence 3457899999988888775 46788999998876544433221 256899999999854 4466666 777
Q ss_pred EEC
Q 014007 286 FNT 288 (432)
Q Consensus 286 wd~ 288 (432)
|.-
T Consensus 249 f~~ 251 (255)
T 3qqz_A 249 FTP 251 (255)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 281
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.53 E-value=0.00018 Score=66.73 Aligned_cols=191 Identities=14% Similarity=0.032 Sum_probs=113.9
Q ss_pred EEEEeeeCC---eEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEeCC-------eEEEEEc
Q 014007 132 VVEMLFRCN---ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVLEQ-------KIFVYNF 201 (432)
Q Consensus 132 v~~~~~~~~---~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~d~-------~i~i~d~ 201 (432)
...++++++ +.++++.. . +.|+.+|..+++............++++++++.++++|. .+..++.
T Consensus 141 P~gvavd~~s~~g~Lyv~D~-~-----~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQ-R-----DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp CCEEEECTTTTTCEEEEECB-T-----SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred CceEEEccccCCCEEEEEeC-C-----CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence 456777763 55444432 2 689999987776655444556689999999998666542 2333333
Q ss_pred CCCee-eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce-eeeec--cCCceeEEEEcCCCCEEEEEc
Q 014007 202 ADLKL-LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT-KFIMA--HDSRIACFALTQDGQLLATSS 277 (432)
Q Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~~~~--~~~~i~~~~~sp~~~~l~~~~ 277 (432)
..+.. ...+. .......++++++...++++. ..++.|+.+|..++.. ..+.. ....-..++|+|+|++|+.+.
T Consensus 215 ~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d--~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 215 ASGFTERLSLC-NARGAKTCAVHPQNGKIYYTR--YHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGTTCCEEEEE-ECSSBCCCEECTTTCCEEECB--TTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCeecccccc-ccCCCCEEEEeCCCCeEEEEE--CCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 22111 11222 223334688999555666543 3568899999886554 33221 122334799999999555554
Q ss_pred -CCCceEEEEECC--CCce--EEEEEeC-CC------------cCceEEEEE---------CCCCCEEEEEeCCCeEEEE
Q 014007 278 -TKGTLVRIFNTL--DGTL--LQEVRRG-AD------------RAEIYSLAF---------SSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 278 -~dg~~i~vwd~~--~~~~--~~~~~~~-~~------------~~~i~~~~~---------s~~~~~l~~~~~dg~i~iw 330 (432)
..+. |+.++.. +++. ...+.+. .. -.....+++ .++|.++++-...+.|+.+
T Consensus 292 ~~~~~-I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 292 NGKHC-IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp TTTTE-EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred CCCCE-EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 4566 9998865 3322 1233221 00 123677999 7777777666677889888
Q ss_pred Ee
Q 014007 331 NL 332 (432)
Q Consensus 331 d~ 332 (432)
+.
T Consensus 371 ~~ 372 (433)
T 4hw6_A 371 TP 372 (433)
T ss_dssp CT
T ss_pred CC
Confidence 74
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.53 E-value=0.0005 Score=61.83 Aligned_cols=231 Identities=14% Similarity=0.176 Sum_probs=155.7
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEee-eCCeEEEecCCCCCCCCCCeEEEEeCCC-Cc
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SR 167 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~ 167 (432)
+.-.+|..+.+|.-....++|||+++........+. ..|.-+.| +++...+++. ..|+-|++.. ..
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~----e~VvfWkWis~~~l~lVT~--------taVyHWsi~~~s~ 137 (494)
T 1bpo_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT----DDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQ 137 (494)
T ss_dssp EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS----SCCCEEEEEETTEEEEECS--------SEEEEEESSSSCC
T ss_pred eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC----CCceEEEecCCCeEEEEcC--------CeeEEecccCCCC
Confidence 456788888888887667999999988877544443 35667776 6677778876 6899999864 35
Q ss_pred eeEEee-c----CCceEEEEEecCccEEEe----------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCC--cE-
Q 014007 168 CIGELS-F----RSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVG--SL- 229 (432)
Q Consensus 168 ~~~~~~-~----~~~v~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~- 229 (432)
+++.+. | ...|..-..+++.++++. .|.+.+|..+. +.-+.+++|......+.+.-+.. .+
T Consensus 138 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf 216 (494)
T 1bpo_A 138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLF 216 (494)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEE
T ss_pred chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEE
Confidence 666665 2 456777788888888772 57889999765 44456666654433332222211 11
Q ss_pred EEEeecCCCCcEEEEEccCCc-----e----e-eee---ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 230 VLVCPGLQKGQVRVEHYASKR-----T----K-FIM---AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~-----~----~-~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
.++.-....+.++|.++.... . . .+. ...+-.-++..++.-..+..-+.-|. |++||+.++.++..
T Consensus 217 ~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~-i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM 295 (494)
T ss_dssp EEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE-EEEEETTTCCEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce-EEEEecccceeeee
Confidence 122211223789998885420 0 1 111 12344568888888888888999999 99999999999987
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
-+.. ...|..-+.+....-++.....|.|.--.++...
T Consensus 296 nrIs--~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 296 NRIS--GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EECC--SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eccc--CCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 7753 3667666666655566666789988888887765
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.52 E-value=0.00013 Score=67.62 Aligned_cols=238 Identities=9% Similarity=-0.002 Sum_probs=141.7
Q ss_pred CCeEEEEEcCC--CCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEe
Q 014007 86 PTLLHISFNQD--HGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWD 162 (432)
Q Consensus 86 ~~v~~~~~s~~--~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd 162 (432)
.....|+|+|+ +..|.++. .+.|+.++..++.... .. ........+++++++.++++...... ....+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~--~~--~~~~~P~giavd~dG~lyVad~~~~~-~~~gv~~~~ 213 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI--KT--TNIGQCADVNFTLNGDMVVVDDQSSD-TNTGIYLFT 213 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE--EC--CCCSCEEEEEECTTCCEEEEECCSCT-TSEEEEEEC
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE--ee--cCCCCccEEEECCCCCEEEEcCCCCc-ccceEEEEE
Confidence 34678999985 34444444 4559999986665432 22 24455778889998876655432100 001233343
Q ss_pred CCCCce-eEEeecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEE-eeccC-CcceEEEecCCCcEEEEeec
Q 014007 163 DHQSRC-IGELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQI-ETIAN-PKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 163 ~~~~~~-~~~~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~g 235 (432)
...+.. ...+........+++++ ++.+.++ ++.|+.+|..++.....+ ..... ....++++|+++.++++-
T Consensus 214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad-- 291 (433)
T 4hw6_A 214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY-- 291 (433)
T ss_dssp GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE--
T ss_pred CCCCeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe--
Confidence 222211 11222334567788999 6776664 568999998777653333 22111 123599999998787764
Q ss_pred CCCCcEEEEEccC--Cce---eeeecc---------------CCceeEEEE---------cCCCCEEEEEcCCCceEEEE
Q 014007 236 LQKGQVRVEHYAS--KRT---KFIMAH---------------DSRIACFAL---------TQDGQLLATSSTKGTLVRIF 286 (432)
Q Consensus 236 ~~d~~i~i~d~~~--~~~---~~~~~~---------------~~~i~~~~~---------sp~~~~l~~~~~dg~~i~vw 286 (432)
...+.|+.++++. +.+ ..+.+. -.....+++ .++|.++++-..++. |+.+
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~ 370 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVL 370 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEE
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEE
Confidence 3568899988763 221 122221 123567999 778877777777777 9999
Q ss_pred ECCCCceEEEEEeCCC----------------cCceEEEEEC-CCCCEEEEEeCCCeEEEEEec
Q 014007 287 NTLDGTLLQEVRRGAD----------------RAEIYSLAFS-SNAQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 287 d~~~~~~~~~~~~~~~----------------~~~i~~~~~s-~~~~~l~~~~~dg~i~iwd~~ 333 (432)
+. ++.. .++.+... -.....|+++ ++|.++++=...++|+.++++
T Consensus 371 ~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 84 6644 34432111 1236789999 566666655677888888764
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=9.1e-05 Score=68.66 Aligned_cols=237 Identities=10% Similarity=0.103 Sum_probs=138.1
Q ss_pred CeEEEEEcC-CCCEEEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeC
Q 014007 87 TLLHISFNQ-DHGCFAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~ 163 (432)
....|+++| ++..|.++. .+.|+.++.+...... .. ........+++++++. ++++...+... ...+..++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~--~~--~~~~~P~~ia~d~~G~~lyvad~~~~~~-~~~v~~~~- 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST--VY--SGLSKVRTICWTHEADSMIITNDQNNND-RPNNYILT- 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE--EE--CCCSCEEEEEECTTSSEEEEEECCSCTT-SEEEEEEE-
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE--Ee--cCCCCcceEEEeCCCCEEEEEeCCCCcc-cceEEEEe-
Confidence 457889998 355555554 4458888887655432 22 2345577888998876 44444321000 01344444
Q ss_pred CCCcee--EEeecCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeecc-CCcceEEEecCCCcEEEEeecC
Q 014007 164 HQSRCI--GELSFRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIA-NPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 164 ~~~~~~--~~~~~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
..+... ..+........++++| ++.++++ ++.|+.++...+.......... ..-..++++|+++.++++- .
T Consensus 212 ~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d--~ 289 (430)
T 3tc9_A 212 RESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV--V 289 (430)
T ss_dssp GGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE--T
T ss_pred CCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE--C
Confidence 333322 2333344567888999 6776664 5789999987765422222211 2345799999998777764 3
Q ss_pred CCCcEEEEEccCC--c---eeeeecc---------------CCcee-EEEEc--------CCCCEEEEEcCCCceEEEEE
Q 014007 237 QKGQVRVEHYASK--R---TKFIMAH---------------DSRIA-CFALT--------QDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 237 ~d~~i~i~d~~~~--~---~~~~~~~---------------~~~i~-~~~~s--------p~~~~l~~~~~dg~~i~vwd 287 (432)
..+.|..++.+.. . ...+.+. -.... .++.. ++|.++++-..++. |+.++
T Consensus 290 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~ 368 (430)
T 3tc9_A 290 NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT 368 (430)
T ss_dssp TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC
T ss_pred CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC
Confidence 5788999887642 1 1222211 01122 45553 44666666666677 99998
Q ss_pred CCCCceEEEEEeC-----C--C--------cCceEEEEECCC-CCEEEEEeCCCeEEEEEec
Q 014007 288 TLDGTLLQEVRRG-----A--D--------RAEIYSLAFSSN-AQWLAVSSDKGTVHVFNLK 333 (432)
Q Consensus 288 ~~~~~~~~~~~~~-----~--~--------~~~i~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 333 (432)
.+++.......+ . . -.....|+++++ +.++++-...+.|+.++++
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 566544333210 0 0 024789999995 5555555567788888764
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.50 E-value=0.00051 Score=60.74 Aligned_cols=174 Identities=10% Similarity=0.005 Sum_probs=112.9
Q ss_pred CeEEEEeCCCCc--eeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeee-EEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSR--CIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLL-HQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..|+.+++.... ....+.....+.+++|.+....+. + .+.|+.+++..+... ..+.........+++.+.++.
T Consensus 13 ~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ 92 (318)
T 3sov_A 13 RDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK 92 (318)
T ss_dssp EEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTE
T ss_pred CeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCe
Confidence 689999987663 222222334577899998544333 3 578999998765322 222222234457899988887
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCc
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAE 305 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~ 305 (432)
++++- ...+.|.+++++......+. ........++++|.+.+|+... ..+. |...++. |+....+... .-..
T Consensus 93 ly~~d--~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~-I~r~~~d-G~~~~~~~~~-~l~~ 167 (318)
T 3sov_A 93 LYWTD--SETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK-IERAGMD-GSSRFIIINS-EIYW 167 (318)
T ss_dssp EEEEE--TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCE-EEEEETT-SCSCEEEECS-SCSC
T ss_pred EEEEE--CCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCE-EEEEEcC-CCCeEEEEEC-CCCC
Confidence 77654 35688999999876554443 3445678999999765665554 2466 8888864 4433344321 2245
Q ss_pred eEEEEECCCCCEEEEEe-CCCeEEEEEecC
Q 014007 306 IYSLAFSSNAQWLAVSS-DKGTVHVFNLKV 334 (432)
Q Consensus 306 i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 334 (432)
...|++++++..|+.+. ..+.|..+|+..
T Consensus 168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 78999999777666664 677899999864
No 286
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.46 E-value=0.00075 Score=60.69 Aligned_cols=258 Identities=10% Similarity=0.119 Sum_probs=164.9
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecC
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 186 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 186 (432)
.|.|.|+.......++.+. -...| .+|....++--. . ..+.++|+++.+.++.+.....|.--.|-.+
T Consensus 49 ~vvIiDl~~~~~~~rrpi~--AdsAI----MnP~~~iiALra-g-----~~lQiFnle~K~klks~~~~e~VvfWkWis~ 116 (494)
T 1bpo_A 49 QVVIIDMNDPSNPIRRPIS--ADSAI----MNPASKVIALKA-G-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 116 (494)
T ss_dssp EEEEEETTSTTSCEEEECC--CSEEE----ECSSSSCEEEEE-T-----TEEEEEETTTTEEEEEEECSSCCCEEEEEET
T ss_pred eEEEEECCCCCcceecccc--cceee----eCCCCcEEEEec-C-----CeEEEEchHHhhhhcceecCCCceEEEecCC
Confidence 3888898776555444443 22222 233333322221 2 7999999999999999997788888888766
Q ss_pred ccE-EEeCCeEEEEEcCC-CeeeEEEeeccC--Ccc--eEEEecCCCcEEEEeec----CCCCcEEEEEccCCceeeeec
Q 014007 187 RII-VVLEQKIFVYNFAD-LKLLHQIETIAN--PKG--LCAVSQGVGSLVLVCPG----LQKGQVRVEHYASKRTKFIMA 256 (432)
Q Consensus 187 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~g----~~d~~i~i~d~~~~~~~~~~~ 256 (432)
..+ ++++..|+-|++.. ..+.+.+.-|.. ... ....+++.+.+++..-. ...|.+.+|..+.+..+.+.+
T Consensus 117 ~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieG 196 (494)
T 1bpo_A 117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (494)
T ss_dssp TEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECC
T ss_pred CeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchhee
Confidence 554 44799999999974 345555554432 222 34446666665543221 235788999999988888999
Q ss_pred cCCceeEEEEcCCC---CEEEEEcCC---CceEEEEECCCC--------ceEEEEEe--CCCcCceEEEEECCCCCEEEE
Q 014007 257 HDSRIACFALTQDG---QLLATSSTK---GTLVRIFNTLDG--------TLLQEVRR--GADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 257 ~~~~i~~~~~sp~~---~~l~~~~~d---g~~i~vwd~~~~--------~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~ 320 (432)
|...-..+.+.-+. .+++.+... +. ++|-++... +....+.. ....+-..++..|+.-..+..
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~k-Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCE-EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcE-EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEE
Confidence 97766655553221 234444332 56 899988542 11111111 111245678888888888999
Q ss_pred EeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEec
Q 014007 321 SSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGM 400 (432)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 400 (432)
-+.-|.|++||+.++.+ +..-+...+.|...+-.....=++....
T Consensus 276 iTK~G~i~lyDleTgt~-----------------------------------i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr 320 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTC-----------------------------------IYMNRISGETIFVTAPHEATAGIIGVNR 320 (494)
T ss_dssp EETTSEEEEEETTTCCE-----------------------------------EEEEECCSSCEEEEEEETTTTEEEEEET
T ss_pred EecCceEEEEeccccee-----------------------------------eeeecccCCceEEecccCCCCcEEEEcc
Confidence 99999999999999984 3334445556666666666566667778
Q ss_pred CCeEEEEEecCC
Q 014007 401 DGSFYRCQFDPV 412 (432)
Q Consensus 401 dg~v~iw~~~~~ 412 (432)
.|.|.--.+|..
T Consensus 321 ~GqVl~v~v~e~ 332 (494)
T 1bpo_A 321 KGQVLSVCVEEE 332 (494)
T ss_dssp TCEEEEEEECTT
T ss_pred CceEEEEEEccc
Confidence 888877666553
No 287
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.46 E-value=1.8e-05 Score=79.05 Aligned_cols=242 Identities=11% Similarity=0.032 Sum_probs=130.0
Q ss_pred CeEEEEEc-CCCCEEEEEcCC------cEEEEEcCCC-eeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 87 TLLHISFN-QDHGCFAAGTDH------GFRIYNCDPF-REIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 87 ~v~~~~~s-~~~~~l~~~~~~------~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
.+...+|| |||++||.+.+. .|+++|++++ +.. ...+. .....+.|++++..|+....+..-....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-CCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-Ccccc----CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 999998876521 2999999887 522 11121 12346789998754443332211001368
Q ss_pred EEEeCCCCce--eEEee--cCCceEEEEEecCccEEEe------CCeEEEEEcCCCe-ee--EEEee-ccCCcceEEEec
Q 014007 159 MIWDDHQSRC--IGELS--FRSEVRSVKLRRDRIIVVL------EQKIFVYNFADLK-LL--HQIET-IANPKGLCAVSQ 224 (432)
Q Consensus 159 ~iwd~~~~~~--~~~~~--~~~~v~~~~~~~~~~~~~~------d~~i~i~d~~~~~-~~--~~~~~-~~~~~~~~~~~~ 224 (432)
+++++.++.. ...+. .......+.|+|||++++. ...|+++|+.++. .. ..+.. .......+.| .
T Consensus 250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~-~ 328 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM-H 328 (751)
T ss_dssp EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE-E
T ss_pred EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee-e
Confidence 8899887642 23333 3344667899999998873 3478999987752 12 22221 1222222222 2
Q ss_pred CCCcEEEEeecC--CCCcEEEEEccC-Cceee-eeccCC--ceeEEEEcCCCCEEEEEcCCCc-eEEEEEC-------CC
Q 014007 225 GVGSLVLVCPGL--QKGQVRVEHYAS-KRTKF-IMAHDS--RIACFALTQDGQLLATSSTKGT-LVRIFNT-------LD 290 (432)
Q Consensus 225 ~~~~~~~~~~g~--~d~~i~i~d~~~-~~~~~-~~~~~~--~i~~~~~sp~~~~l~~~~~dg~-~i~vwd~-------~~ 290 (432)
.++.+++.+... ....|..+|+.+ ..... +..+.. .+..+.+. .+.++++...++. .|+++|+ .+
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~ 407 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKA 407 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccC
Confidence 377777665221 234666777764 33334 444444 34555554 3344555666664 1566675 34
Q ss_pred CceEEEEEeCCCcCceEEEEE----CCCCC-EEEEEeCC---CeEEEEEecCCC
Q 014007 291 GTLLQEVRRGADRAEIYSLAF----SSNAQ-WLAVSSDK---GTVHVFNLKVNS 336 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~----s~~~~-~l~~~~~d---g~i~iwd~~~~~ 336 (432)
++.+..+... ....+..+.+ ++++. ++++.+.. ..++.+|+.+++
T Consensus 408 g~~~~~l~l~-~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 408 GTGLREVVME-EPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTCCEECCCC-CSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CccceEECCC-CceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4413344321 1122344433 34655 44443322 467777776654
No 288
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.44 E-value=0.00079 Score=65.41 Aligned_cols=227 Identities=7% Similarity=-0.070 Sum_probs=144.2
Q ss_pred CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC
Q 014007 98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR 175 (432)
Q Consensus 98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~ 175 (432)
.+|+.+..+.|+..++++........+. .-.....++|++. +..+.+...+ +.|+.+++........+. ..
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~l~~d~~~~~lywtD~~~-----~~I~r~~~~g~~~~~v~~~g~ 79 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLT--GVKEASALDFDVTDNRIYWTDISL-----KTISRAFMNGSALEHVVEFGL 79 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCC--SCSCEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcC--CCCceEEEEEECCCCEEEEEECCC-----CeEEEEECCCCCcEEEEeCCC
Confidence 4677777777999999865443222232 3346778888874 5555555555 899999976554433343 23
Q ss_pred CceEEEEEecCccEE-Ee---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCce
Q 014007 176 SEVRSVKLRRDRIIV-VL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRT 251 (432)
Q Consensus 176 ~~v~~~~~~~~~~~~-~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 251 (432)
....++++.+.+..+ .+ .+.|.+.++........+...-.....+++.|....++++-.| ..+.|...+++....
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~ 158 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER 158 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCce
Confidence 567889998754433 33 5689999986433222222222334679999987777765423 467888888888666
Q ss_pred eeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 252 KFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 252 ~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
..+...-.....|++++++..|+.+. ..+. |..+|+..... ..+... -.....+++.. +..+.+-...+.|...
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~-I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLDTNL-IESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETTTTE-EEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred EEEECCCCCcceEEEccccCEEEEEECCCCE-EEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 65555556788999999766666655 4556 99999865444 334332 23456788754 4444444467888888
Q ss_pred EecCCCC
Q 014007 331 NLKVNSG 337 (432)
Q Consensus 331 d~~~~~~ 337 (432)
|..+++.
T Consensus 234 dk~tg~~ 240 (628)
T 4a0p_A 234 NKTSGQN 240 (628)
T ss_dssp ETTTCCS
T ss_pred ECCCCCc
Confidence 8766653
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.43 E-value=0.0011 Score=66.01 Aligned_cols=175 Identities=9% Similarity=-0.025 Sum_probs=115.8
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCc-cEEEe---CCeEEEEEcCCC----eeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVL---EQKIFVYNFADL----KLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
..|+..++........+.....+.+|+|.+.. .++++ .+.|+.+++... .....+.........+++.+.++
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~ 483 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 483 (791)
T ss_dssp SSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred cceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCC
Confidence 56888887766555555566778899999854 44444 568999988652 22223332334456799999998
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc-CC-CceEEEEECCCCceEEEEEeCCCcC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS-TK-GTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~d-g~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
.+|++- ...+.|.+.+++......+. ..-.....|+++|.+.+|+... .. +. |.+.++. |.....+... .-.
T Consensus 484 ~LY~tD--~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~d-G~~~~~lv~~-~l~ 558 (791)
T 3m0c_C 484 NIYWTD--SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NIQ 558 (791)
T ss_dssp EEEEEE--TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SCS
T ss_pred cEEEEe--cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe-EEEEecC-CCceEEEEeC-CCC
Confidence 888764 45789999999886665554 3445688999999755555544 33 66 9999875 4444444422 225
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEEecCC
Q 014007 305 EIYSLAFSSNAQWLAVSS-DKGTVHVFNLKVN 335 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 335 (432)
....|++++.+..|+.+. ..+.|..+++...
T Consensus 559 ~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 559 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 689999998777776664 5668888888654
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=0.00031 Score=65.40 Aligned_cols=247 Identities=6% Similarity=-0.002 Sum_probs=141.5
Q ss_pred CeEEEEEcC-CCCEEEEEc-C-CcEEEEEcCCCeeEEEeecccCcceeEEEEee-------eCCeE-EEecCCCCCC-CC
Q 014007 87 TLLHISFNQ-DHGCFAAGT-D-HGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-------RCNIL-ALVGGGPDPQ-YP 154 (432)
Q Consensus 87 ~v~~~~~s~-~~~~l~~~~-~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~-~~~s~~~d~~-~~ 154 (432)
....|+|+| +...|.++. . +.|++.|.+....................++| ++++. ++++...+.. ..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899998 355455554 3 33888888766554322221112335788888 88876 4444332200 00
Q ss_pred CCeEEEEeCCC-Ccee-----EEeecCCceEEEEEecC-ccEEEe---CCeEEEEEcC-------CCee-----------
Q 014007 155 LNKVMIWDDHQ-SRCI-----GELSFRSEVRSVKLRRD-RIIVVL---EQKIFVYNFA-------DLKL----------- 206 (432)
Q Consensus 155 ~~~v~iwd~~~-~~~~-----~~~~~~~~v~~~~~~~~-~~~~~~---d~~i~i~d~~-------~~~~----------- 206 (432)
...|.+++... +... ..+..-.....++++|+ +.+++. ++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 02366776433 2221 22221224457788994 454443 6789999987 5543
Q ss_pred eEE-Eeec-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC--Cce---eeeecc---C------------Ccee-E
Q 014007 207 LHQ-IETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS--KRT---KFIMAH---D------------SRIA-C 263 (432)
Q Consensus 207 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~~~---~~~~~~---~------------~~i~-~ 263 (432)
... +... ...-..++++|+++.++++- ...+.|+.++.+. +.+ ..+.+. . .... .
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 2221 22345799999998777764 4578888877654 222 222221 0 1234 4
Q ss_pred EEEc-------CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCC----------------------cCceEEEEECCC
Q 014007 264 FALT-------QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGAD----------------------RAEIYSLAFSSN 314 (432)
Q Consensus 264 ~~~s-------p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~----------------------~~~i~~~~~s~~ 314 (432)
++.. ++|.++++-..+.. |+.++ .++. +.++-+... -.....|+++++
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~r-Ir~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFC-VRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTE-EEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEccccccccCCCeEEEEECCCCE-EEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 4554 46676666667777 99998 5674 445543210 024678999997
Q ss_pred -CCEEEEEeCCCeEEEEEecCCCCC
Q 014007 315 -AQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 315 -~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
|.++++=....+|+.++++.....
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCEEEEEeCCCCEEEEEECCCCccc
Confidence 666666567889999999876643
No 291
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.41 E-value=8.4e-05 Score=65.42 Aligned_cols=182 Identities=14% Similarity=0.213 Sum_probs=117.5
Q ss_pred EEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc----c---E-EEe-----CCeEEEEEcC-CCeee
Q 014007 142 LALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR----I---I-VVL-----EQKIFVYNFA-DLKLL 207 (432)
Q Consensus 142 ~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~----~---~-~~~-----d~~i~i~d~~-~~~~~ 207 (432)
..+++.... +-+.+||+ +|+.++.+.. +.++.+..-|+- . + +++ +++|.+|++. ....+
T Consensus 41 s~ii~t~k~-----~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 41 SKLITTNKK-----SGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp CEEEEEETT-----TEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred cEEEEEcCC-----CCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 335555555 89999998 8998888864 677888777742 1 2 222 3689999773 22234
Q ss_pred EEEee-------ccCCcceEEE--ecCCCcEEEEeecCCCCcEEEEEccC--------CceeeeeccCCceeEEEEcCCC
Q 014007 208 HQIET-------IANPKGLCAV--SQGVGSLVLVCPGLQKGQVRVEHYAS--------KRTKFIMAHDSRIACFALTQDG 270 (432)
Q Consensus 208 ~~~~~-------~~~~~~~~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~sp~~ 270 (432)
..+.. .......+++ ++....+++... ..+|.+..|++.. +.++.+. ..+.+..+...+..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~-~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~ 191 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVT-GKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEY 191 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEE-CSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEE-CCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCC
Confidence 44411 1134455677 665554333333 4779999998842 2233333 35678899999988
Q ss_pred CEEEEEcCCCceEEEEECC-----CCceEEEEEeCCCcCceEEEEE--CCCCC-EEEEEe-CCCeEEEEEec
Q 014007 271 QLLATSSTKGTLVRIFNTL-----DGTLLQEVRRGADRAEIYSLAF--SSNAQ-WLAVSS-DKGTVHVFNLK 333 (432)
Q Consensus 271 ~~l~~~~~dg~~i~vwd~~-----~~~~~~~~~~~~~~~~i~~~~~--s~~~~-~l~~~~-~dg~i~iwd~~ 333 (432)
..|+.+-++.. |..+|.+ +++.+..+........+..|++ .++++ +|++++ .++++.+||.+
T Consensus 192 g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 192 GRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 89999999988 8888865 3445544432222346888887 55665 666665 67899999996
No 292
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.40 E-value=0.0017 Score=63.11 Aligned_cols=174 Identities=9% Similarity=-0.033 Sum_probs=116.8
Q ss_pred CeEEEEeCCCCceeEEee--cCCceEEEEEecCccEEE-e---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcE
Q 014007 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKLRRDRIIVV-L---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSL 229 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (432)
+.|+..++........+. .-..+.+++|++....++ + ++.|+.+++........+.........+++.+.++.+
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEE
Confidence 689999998765444433 335788999998654444 3 6789999986543333333222345679999988888
Q ss_pred EEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEc--CCCceEEEEECCCCceEEEEEeCCCcCce
Q 014007 230 VLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSS--TKGTLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 230 ~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~--~dg~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
+++- ...+.|.+.++++.....+. ..-.....|+++|...+|+... ..+. |...++..... ..+.. .-...
T Consensus 95 Y~tD--~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~dG~~~-~~l~~--~~~~P 168 (628)
T 4a0p_A 95 YWAD--TGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMDGSER-TTLVP--NVGRA 168 (628)
T ss_dssp EEEE--TTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETTSCSC-EEEEC--SCSSE
T ss_pred EEEE--CCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCCCCce-EEEEC--CCCCc
Confidence 7754 35689999999886554443 3445678999998555555544 2456 88888754433 33332 23568
Q ss_pred EEEEECCCCCEEEEEe-CCCeEEEEEecCC
Q 014007 307 YSLAFSSNAQWLAVSS-DKGTVHVFNLKVN 335 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~ 335 (432)
..|+++++++.|+.+. ..+.|..+|+...
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 8999999877777665 5678999988654
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=0.0028 Score=59.08 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=111.5
Q ss_pred EEEEeeeC--CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeec----CCceEEEEE-------ecCccEEE-e---CC
Q 014007 132 VVEMLFRC--NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSF----RSEVRSVKL-------RRDRIIVV-L---EQ 194 (432)
Q Consensus 132 v~~~~~~~--~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~----~~~v~~~~~-------~~~~~~~~-~---d~ 194 (432)
...|+++| .+.++++.... +.|++.|.+++........ ......++| ++++..++ + ++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~-----~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGH-----KAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETE-----EEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred CCEEEEccCCCCEEEEEECCC-----CeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 45778887 35555554444 6799999887765544432 235889999 99987444 3 21
Q ss_pred ------eEEEEEcCC-Ceee-----EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEcc-------CCce----
Q 014007 195 ------KIFVYNFAD-LKLL-----HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYA-------SKRT---- 251 (432)
Q Consensus 195 ------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-------~~~~---- 251 (432)
.|.+++... +... ..+..... ...++++|++..++++. ..++.|..+|+. ++..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~-p~giavdp~~g~LYvtd--~~~g~V~r~d~~~~~~~~~tg~~~tp~ 292 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQ-CNGATIHPINGELYFNS--YEKGQVFRLDLVDYFKTIKNGGSWDPI 292 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEEESC-CCCEEECTTTCCEEEEE--TTTTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred CcccCceEEEEecCCCCceeecccceeeccCCC-ceEEEEcCCCCeEEEEE--CCCCEEEEEecccccccccCceeeccc
Confidence 266676333 2221 23333333 34678899877777654 467889999987 4433
Q ss_pred --------eee-e-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEEC--CCCce--EEEEEeC-CCc------------
Q 014007 252 --------KFI-M-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNT--LDGTL--LQEVRRG-ADR------------ 303 (432)
Q Consensus 252 --------~~~-~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~--~~~~~--~~~~~~~-~~~------------ 303 (432)
..+ . +.......|+|+|+|++|+.+. .... |+.+|. ..+.. ...+-+. ...
T Consensus 293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~-I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY-FMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE-EEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE-EEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 121 1 2234568999999999655554 4555 888654 33322 1233321 000
Q ss_pred CceE-EEEEC-------CCCCEEEEEeCCCeEEEEE
Q 014007 304 AEIY-SLAFS-------SNAQWLAVSSDKGTVHVFN 331 (432)
Q Consensus 304 ~~i~-~~~~s-------~~~~~l~~~~~dg~i~iwd 331 (432)
.... .++.. .+|.++++=...++|+.++
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~ 407 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT 407 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe
Confidence 1233 44443 4556555555777888887
No 294
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.25 E-value=6.1e-05 Score=75.24 Aligned_cols=193 Identities=8% Similarity=0.036 Sum_probs=112.9
Q ss_pred eEEEEeee-CCeEEEec-----CCCCCCCCCCeEEEEeCCCC-ceeEE-eecCCceEEEEEecCccEEEe---C-----C
Q 014007 131 GVVEMLFR-CNILALVG-----GGPDPQYPLNKVMIWDDHQS-RCIGE-LSFRSEVRSVKLRRDRIIVVL---E-----Q 194 (432)
Q Consensus 131 ~v~~~~~~-~~~~~~~s-----~~~d~~~~~~~v~iwd~~~~-~~~~~-~~~~~~v~~~~~~~~~~~~~~---d-----~ 194 (432)
.+....|+ |++..++- |+.. ..|+++|+.++ +.+.. +. .....+.|+||++.++. + .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~-----~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEV-----YTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSC-----EEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCce-----EEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCC
Confidence 67788999 99976663 2222 46999999988 63221 21 12456889999976662 3 2
Q ss_pred eEEEEEcCCCee--eEEEeec-cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC--ce--eeee-ccCCceeEEEE
Q 014007 195 KIFVYNFADLKL--LHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK--RT--KFIM-AHDSRIACFAL 266 (432)
Q Consensus 195 ~i~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~--~~--~~~~-~~~~~i~~~~~ 266 (432)
.|+++++.++.. ...+... ......+.|+|||+.+++.........|.++|+.++ .. ..+. .......++.|
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence 688888877542 2222221 223346789999998887764445667888898774 23 3333 34455566665
Q ss_pred cCCCCEEEEEcCC----CceEEEEECCCCceEEE-EEeCCCcCceEEEEECCCCCEEEEEeCCCeEE--EEEe
Q 014007 267 TQDGQLLATSSTK----GTLVRIFNTLDGTLLQE-VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH--VFNL 332 (432)
Q Consensus 267 sp~~~~l~~~~~d----g~~i~vwd~~~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~--iwd~ 332 (432)
+.++.+++....+ .. |..+|+.++..... +..+.....+..+.+. .+.++++...++..+ ++++
T Consensus 328 ~~g~~l~~~t~~~~a~~~~-L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 328 HGTSHLVILTNEGGAVNHK-LLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp ETTTEEEEEECTTTCTTCE-EEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred eeCCEEEEEeCCCCCCCcE-EEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 5444444444443 24 77778765322222 2222122245666665 334555666777644 5554
No 295
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.22 E-value=0.0003 Score=69.13 Aligned_cols=232 Identities=9% Similarity=0.005 Sum_probs=123.9
Q ss_pred CeEEEEEcCCCCEEEEEc-CC-cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-CCCCCCCCeEEEEeC
Q 014007 87 TLLHISFNQDHGCFAAGT-DH-GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-PDPQYPLNKVMIWDD 163 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~-~~-~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-~d~~~~~~~v~iwd~ 163 (432)
...++++..+|+++++|+ +. .+.+||..+.+-.....+. ....-..+...+++.+++.|+ .+.......+.+||.
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~--~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ--VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCS--SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCC--ccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 344578889999999988 33 4999998776654333332 222223344444565665555 332222357999998
Q ss_pred CCCceeEE-------ee---------cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEeeccC---------C
Q 014007 164 HQSRCIGE-------LS---------FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIETIAN---------P 216 (432)
Q Consensus 164 ~~~~~~~~-------~~---------~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~---------~ 216 (432)
.+++-... +. ..+.+..+.. .++..+.. ...+..||..+............ .
T Consensus 322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred CCCcceeCCCccccccccccccceeecCCceEEEEC-CCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 87653321 00 0111111111 12322221 35688999887654433322211 1
Q ss_pred cceEEEecCCCcEEEEeecCC--C-----C---cEEEEEccCCceeeee---ccCCc-eeEEEEcCCCCEEEEEcCC---
Q 014007 217 KGLCAVSQGVGSLVLVCPGLQ--K-----G---QVRVEHYASKRTKFIM---AHDSR-IACFALTQDGQLLATSSTK--- 279 (432)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~g~~--d-----~---~i~i~d~~~~~~~~~~---~~~~~-i~~~~~sp~~~~l~~~~~d--- 279 (432)
...+.+...+..+++ ++|.. + . .|.+||..+..-..+. .+... -.++...|+|++++.|+.+
T Consensus 401 ~~av~~~~~~~~i~v-~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~ 479 (656)
T 1k3i_A 401 GNAVMYDAVKGKILT-FGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI 479 (656)
T ss_dssp CEEEEEETTTTEEEE-ECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred CceEeccCCCCeEEE-EeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence 123334344445544 34421 1 1 5777887765544332 12222 3455677899999999864
Q ss_pred --------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeC
Q 014007 280 --------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSD 323 (432)
Q Consensus 280 --------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 323 (432)
.. +.+||..+.+-...-.............+.++|+.++.|+.
T Consensus 480 ~~~~~~~~~~-v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 480 PFEDSTPVFT-PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp TTCCCSBCCC-CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcCCCCcccc-eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 45 89999877654321111111122334556799999999984
No 296
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.20 E-value=8e-06 Score=80.60 Aligned_cols=229 Identities=10% Similarity=-0.055 Sum_probs=129.3
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCC-eEEEecCCCCCCCCCCeEEEEeCCC----CceeEEee
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCN-ILALVGGGPDPQYPLNKVMIWDDHQ----SRCIGELS 173 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~~~~~~v~iwd~~~----~~~~~~~~ 173 (432)
+|+.+..+.|+..++++.... ..+. ....+..++|++. +.++++.... +.|+.+++.. ......+.
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~--~~~~--~~~~p~gla~d~~~~~Ly~sD~~~-----~~I~~~~~~g~~~~~~~~~~i~ 449 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYT--SLIP--NLRNVVALDTEVASNRIYWSDLSQ-----RMICSTQLDRAHGVSSYDTVIS 449 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEE--CCSC--CCTTCCCCEEETTTTEEEECCTTT-----TSBEEEESCCCCC-CCCCCBCC
T ss_pred eEEecCccceEEEeCCCCcce--eeec--cCcceEEEccccccCeEEEEecCC-----CeEEEEecCCCCCCcceEEEEe
Confidence 344455556888887665433 2222 2234567778764 4455554444 7899999875 22222222
Q ss_pred -cCCceEEEEEec-CccEEEe---CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC
Q 014007 174 -FRSEVRSVKLRR-DRIIVVL---EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS 248 (432)
Q Consensus 174 -~~~~v~~~~~~~-~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 248 (432)
.......|++.+ .+.++++ .+.|.++++........+.........++++|.+..++++-.+ ..+.|.+++++.
T Consensus 450 ~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG 528 (699)
T 1n7d_A 450 RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 528 (699)
T ss_dssp SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSS
T ss_pred CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCC
Confidence 223456778874 3444443 5689999976543333332222344678999988777765322 337888888776
Q ss_pred Cceeeee-ccCCceeEEEEcCCCCEEE-EEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEECCCCCEEEEEeCCC
Q 014007 249 KRTKFIM-AHDSRIACFALTQDGQLLA-TSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFSSNAQWLAVSSDKG 325 (432)
Q Consensus 249 ~~~~~~~-~~~~~i~~~~~sp~~~~l~-~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg 325 (432)
.....+. ..-.....|+|+|++..|+ +-+..+. |.++|+... ....+... ........|++..+ .++++....+
T Consensus 529 ~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~-I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~ 605 (699)
T 1n7d_A 529 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS-ISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-KVFWTDIINE 605 (699)
T ss_dssp CCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE-EEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred CCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe-EEEEccCCC-ceEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence 5443332 2234567899998765554 4455566 999998543 33333211 11123445666443 4444555678
Q ss_pred eEEEEEecCCCCCCC
Q 014007 326 TVHVFNLKVNSGSAR 340 (432)
Q Consensus 326 ~i~iwd~~~~~~~~~ 340 (432)
.|..++..+++.+..
T Consensus 606 ~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 606 AIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEEEETTTEEEEEC
T ss_pred eEEEEEccCCCceEE
Confidence 899999876654433
No 297
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.14 E-value=1.6e-05 Score=78.38 Aligned_cols=174 Identities=8% Similarity=-0.045 Sum_probs=108.4
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-e---CCeEEEEEcCC----CeeeEEEeeccCCcceEEEecCCC
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-L---EQKIFVYNFAD----LKLLHQIETIANPKGLCAVSQGVG 227 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~---d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 227 (432)
+.|+..++...+....+.....+.+++|.+.+..|+ + .+.|+.+++.. ......+.........+++.+.++
T Consensus 386 ~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g 465 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 465 (699)
T ss_dssp TC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSS
T ss_pred cceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCC
Confidence 678888887766555555455677899998654444 3 57899999875 222222211112234688888777
Q ss_pred cEEEEeecCCCCcEEEEEccCCceeeeec-cCCceeEEEEcCCCCEEEEEcC-C-CceEEEEECCCCceEEEEEeCCCcC
Q 014007 228 SLVLVCPGLQKGQVRVEHYASKRTKFIMA-HDSRIACFALTQDGQLLATSST-K-GTLVRIFNTLDGTLLQEVRRGADRA 304 (432)
Q Consensus 228 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~-d-g~~i~vwd~~~~~~~~~~~~~~~~~ 304 (432)
.++++- ...+.|.++++.......+.. .......|+++|.+.+|+.... . +. |.++++.. .....+... .-.
T Consensus 466 ~LY~tD--~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~dG-~~~~~l~~~-~l~ 540 (699)
T 1n7d_A 466 NIYWTD--SVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLNG-VDIYSLVTE-NIQ 540 (699)
T ss_dssp BCEECC--TTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSSS-CCCCEESCS-SCS
T ss_pred cEEEEe--ccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCCC-CCeeEEEeC-CCC
Confidence 777643 356889999988766555432 2345678999996655555443 2 66 88887643 322233211 124
Q ss_pred ceEEEEECCCCCEEEEE-eCCCeEEEEEecC
Q 014007 305 EIYSLAFSSNAQWLAVS-SDKGTVHVFNLKV 334 (432)
Q Consensus 305 ~i~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 334 (432)
....|+|+|++..|+.+ +..+.|..+++..
T Consensus 541 ~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 541 WPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 56789999976655554 4677899999864
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.09 E-value=0.0018 Score=57.06 Aligned_cols=133 Identities=13% Similarity=0.236 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCeeeEEEeeccCCcceEEEec----CCCc--EEEEeecCC--CCcEEEEEcc--CCceeeeec------
Q 014007 193 EQKIFVYNFADLKLLHQIETIANPKGLCAVSQ----GVGS--LVLVCPGLQ--KGQVRVEHYA--SKRTKFIMA------ 256 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~g~~--d~~i~i~d~~--~~~~~~~~~------ 256 (432)
++-+.+||+ +|+.++.+.. ...+.+.+.| .++. +++++ ... ++.|.+|+++ ++.+..+..
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as-~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~ 124 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAAS-NRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIA 124 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEE-ECSTTCCEEEEEEECTTTCCEEECSCTTSCEE
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEe-CCCCCCCeEEEEEECCCCCceeeccccccCcC
Confidence 568999999 8898888753 4455566555 2333 23333 334 6889999774 444544421
Q ss_pred cC-CceeEEEE--cCC-CC-EEEEEcCCCceEEEEECC-------CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007 257 HD-SRIACFAL--TQD-GQ-LLATSSTKGTLVRIFNTL-------DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (432)
Q Consensus 257 ~~-~~i~~~~~--sp~-~~-~l~~~~~dg~~i~vwd~~-------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 324 (432)
.. ..+..+++ +|. ++ ++++...+|. +..|++. +.+.+++|.. ...+-.+...+....|+.+-++
T Consensus 125 t~~~~pyGlcly~~~~~g~~yafV~~k~G~-~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 125 TAINEVYGFTLYHSQKTGKYYAMVTGKEGE-FEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp CCCSSCCCEEEEECTTTCCEEEEEECSSSE-EEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCeeEEEEEecCCCCcEEEEEECCCCe-EEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEeccc
Confidence 22 56777888 774 43 6888888898 9999883 3466778874 3578899999988899999988
Q ss_pred CeEEEEEec
Q 014007 325 GTVHVFNLK 333 (432)
Q Consensus 325 g~i~iwd~~ 333 (432)
..|..|+.+
T Consensus 201 ~GIw~~da~ 209 (355)
T 3amr_A 201 EAIWKFSAE 209 (355)
T ss_dssp TEEEEEECS
T ss_pred ceEEEEeCC
Confidence 666555544
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.05 E-value=0.0027 Score=61.61 Aligned_cols=228 Identities=11% Similarity=-0.001 Sum_probs=131.3
Q ss_pred CEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCce-eEEee-c
Q 014007 98 GCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRC-IGELS-F 174 (432)
Q Consensus 98 ~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~-~~~~~-~ 174 (432)
.+|.-+..+.|+..+++.......... ........++|++ ++..+.+-... +.|..+++..... ...+. .
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~--~~~~~~~~ld~~~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~~v~~~~ 82 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSE-----EAIKRTEFNKTESVQNVVVSG 82 (619)
T ss_dssp CCEEEECSSBEEEECCC---------C--BCCSCEEEEEEETTTTEEEEEETTT-----TEEEEEEC-----CEEEECSS
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEE--cCCCceEEEEEEeCCCEEEEEECCC-----CeEEEEEccCCCceEEEEeCC
Confidence 456677777799988875432221222 2344567888886 44455554444 7899999765432 22233 2
Q ss_pred CCceEEEEEecCcc-EEEe---CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC
Q 014007 175 RSEVRSVKLRRDRI-IVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK 249 (432)
Q Consensus 175 ~~~v~~~~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 249 (432)
-....++++.+.+. +..+ .+.|.+.++... ....+. ........+++.|.+..++++-.| ..+.|...+++..
T Consensus 83 ~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~ 160 (619)
T 3s94_A 83 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGS 160 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSC
T ss_pred CCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCC
Confidence 36788999998544 4444 578999998643 333332 233345579999988777765433 4577888888775
Q ss_pred ceeeee-ccCCceeEEEEcCCCCEEEEE-cCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeE
Q 014007 250 RTKFIM-AHDSRIACFALTQDGQLLATS-STKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTV 327 (432)
Q Consensus 250 ~~~~~~-~~~~~i~~~~~sp~~~~l~~~-~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 327 (432)
....+. ..-.....|++++++..|+.+ ...+. |..+|+..... ..+... .-.....|++..+ ..+.+-...+.|
T Consensus 161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~-I~~~~~dG~~~-~~~~~~-~~~~P~gi~~~~~-~ly~td~~~~~V 236 (619)
T 3s94_A 161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF-IHKSNLDGTNR-QAVVKG-SLPHPFALTLFED-ILYWTDWSTHSI 236 (619)
T ss_dssp SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC-EEEESSSCCEE-C----------CCCEEESSS-EEEEECTTTCSE
T ss_pred ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe-EEEecCCCCcc-EEEEeC-CCCCceEEEEeCC-EEEEecCCCCEE
Confidence 544443 334567899999876655554 44566 99998754332 222211 1122356777655 333344467789
Q ss_pred EEEEecCCCCC
Q 014007 328 HVFNLKVNSGS 338 (432)
Q Consensus 328 ~iwd~~~~~~~ 338 (432)
...|..+++..
T Consensus 237 ~~~d~~tg~~~ 247 (619)
T 3s94_A 237 LACNKYTGEGL 247 (619)
T ss_dssp EEEESSSCCCC
T ss_pred EEEECCCCccc
Confidence 88888776543
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.01 E-value=0.00087 Score=58.48 Aligned_cols=160 Identities=9% Similarity=0.052 Sum_probs=104.3
Q ss_pred ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeee-ecc-------CCceeEEEE---cCCCCEEEEEcC--------
Q 014007 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFI-MAH-------DSRIACFAL---TQDGQLLATSST-------- 278 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~-------~~~i~~~~~---sp~~~~l~~~~~-------- 278 (432)
.+++|+.....+++.. -..+.|..||...+....+ ... ...+..|.| .|+++++++...
T Consensus 16 E~~~wd~~~g~~~vs~--l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g 93 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSN--LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD 93 (334)
T ss_dssp SCEEEETTTTEEEEEE--TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred cCccCcCCCCEEEEEe--ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence 4678888777666543 4689999999875443332 111 113579999 688888775431
Q ss_pred -----CCceEEEEECC---CCceEEEEEeCC-----------CcCceEEEEECCCCCEEEEEeCC-CeEEEEEecCCCCC
Q 014007 279 -----KGTLVRIFNTL---DGTLLQEVRRGA-----------DRAEIYSLAFSSNAQWLAVSSDK-GTVHVFNLKVNSGS 338 (432)
Q Consensus 279 -----dg~~i~vwd~~---~~~~~~~~~~~~-----------~~~~i~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~ 338 (432)
+.. |..||+. +++.+....... .......++..++|+..++++.. +.|..++..... +
T Consensus 94 ~~~~g~~~-v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 94 QSSHGASS-FHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp CCSSSCCE-EEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred cccCCCCE-EEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 566 9999999 888877665210 01248899999999999988877 776655554332 0
Q ss_pred CCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEEec
Q 014007 339 ARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~ 410 (432)
. .+ +.... .....-..+.++++|+|+.|++....|.+..+++.
T Consensus 172 ~------------------~~------~~~~~-----~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 172 S------------------TF------AWESG-----NGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp E------------------EE------EECCC-----CSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred e------------------ee------eecCC-----CcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 0 00 00000 00001136789999999998888779999888765
No 301
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.01 E-value=0.007 Score=53.68 Aligned_cols=270 Identities=14% Similarity=0.132 Sum_probs=141.8
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...+.+|.|.+++..+++|..+.| +...+.++.=...... ......+..+.+.++..+++ + .. +.|+.- .
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~-g-~~-----g~i~~S-~ 105 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIV-G-EP-----PIMLHT-T 105 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEE-E-ET-----TEEEEE-S
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEE-E-CC-----CeEEEE-C
Confidence 347999999988888887765544 3333333211111111 01345678888887544443 3 23 655442 2
Q ss_pred CCCceeEEee----cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecC
Q 014007 164 HQSRCIGELS----FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 164 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
..|+.-.... +...+..+.+.+++.+++. ++.|+. ....++.-..+. .....+..+.+.+++.. ++. +
T Consensus 106 DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~--~~~-g- 180 (327)
T 2xbg_A 106 DGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEY--VAV-S- 180 (327)
T ss_dssp STTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCE--EEE-E-
T ss_pred CCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcE--EEE-E-
Confidence 3344322222 2356778887777766653 444322 112233322222 22334566777776543 332 2
Q ss_pred CCCcEEEE-EccCCceeee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC--CCcCceEEEEEC
Q 014007 237 QKGQVRVE-HYASKRTKFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG--ADRAEIYSLAFS 312 (432)
Q Consensus 237 ~d~~i~i~-d~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~--~~~~~i~~~~~s 312 (432)
.+|.+..- |-....-..+ ......+..+.+.+++.+++ ++.+|. +++.+...++.-..+... .....+..+.+.
T Consensus 181 ~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 181 SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGK-IAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTE-EEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCce-EEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 34555443 3212221111 23456788999999987664 455777 777642224333222211 112358899999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEE---ecCCCceEEEEc
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFR---LVEGSPYIVAFG 389 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s 389 (432)
+++..++++. +|.| ++..+.++. |. .+. .....+..+.|.
T Consensus 259 ~~~~~~~~g~-~g~i-~~S~DgG~t---------------------------------W~--~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 259 TPNEVWLAGG-AGAL-LCSQDGGQT---------------------------------WQ--QDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp SSSCEEEEES-TTCE-EEESSTTSS---------------------------------CE--ECGGGTTSSSCCCEEEEE
T ss_pred CCCEEEEEeC-CCeE-EEeCCCCcc---------------------------------cE--EcCccCCCCCCeEEEEEE
Confidence 8888777664 6666 344444431 00 000 012346788887
Q ss_pred cCCCEEEEEecCCeEEEEE
Q 014007 390 HQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 390 ~~~~~l~~~~~dg~v~iw~ 408 (432)
+++ .+++++.+|.|+.++
T Consensus 302 ~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 302 SPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp ETT-EEEEECSTTEEEEEC
T ss_pred CCC-ceEEEcCCceEEEEc
Confidence 554 466777899776644
No 302
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.98 E-value=0.018 Score=57.51 Aligned_cols=230 Identities=13% Similarity=0.146 Sum_probs=133.6
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDH 164 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~ 164 (432)
...|++|.-..+|.+- .|+.+|+..||-...+.. ..........|.++....++.+.++.. .-+..||..
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigT~-------~Gl~~yd~~ 90 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQH--FTYGENNNTRIYCGVIIDNTYLYMGTD-------NGILVYNYR 90 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEEC--SCTTSTTSSCEEEEEEETTTEEEEEET-------TEEEEEETT
T ss_pred cceEEEEEECCCCCEE-EEECCCccccCCCceEEE--EccCCCCCceEEEEEEcCCCcEEEEeC-------CCeEEEeCC
Confidence 5689999999888654 455778888874322211 111112345677877777765555443 458899987
Q ss_pred CCceeEEee-cCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEee-----ccCCcceEEEecCCCcEEEEeecCCC
Q 014007 165 QSRCIGELS-FRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIET-----IANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 165 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
+.+...... ....|.++.......++++.+.|..+|..+++.. .+.. ....+..+....++ .+++++ .
T Consensus 91 ~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g-~lWigt---~- 164 (758)
T 3ott_A 91 ADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDN-QIYVGT---Y- 164 (758)
T ss_dssp TTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTC-CEEEEE---T-
T ss_pred CCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCC-CEEEEe---C-
Confidence 764432111 2345777765433344556668899998765432 2311 12234444444444 445543 2
Q ss_pred CcEEEEEccCCceeeeecc------CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEEC
Q 014007 239 GQVRVEHYASKRTKFIMAH------DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFS 312 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s 312 (432)
+-+..++..+.....+... ...|.++....++..|..|+. +. |..+|..+++... +... ....|.++...
T Consensus 165 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G-l~~~~~~~~~~~~-~~~l-~~~~i~~i~~d 240 (758)
T 3ott_A 165 NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY-LFQYFPSTGQIKQ-TEAF-HNNSIKSLALD 240 (758)
T ss_dssp TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE-EEEEETTTTEEEE-EEEE-EEEEEEEEEEC
T ss_pred CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CC-CeEEcCCCCeEEe-ccCC-CCCeEEEEEEc
Confidence 3477788766554433211 224888888777776666664 45 8899987765432 2211 12468889888
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCC
Q 014007 313 SNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.+|.+.+. +.+ -+.+++..+.+
T Consensus 241 ~~g~lWig-T~~-Gl~~~~~~~~~ 262 (758)
T 3ott_A 241 GNGDLLAG-TDN-GLYVYHNDTTP 262 (758)
T ss_dssp TTCCEEEE-ETT-EEEEECCTTSC
T ss_pred CCCCEEEE-eCC-ceeEEecCCCc
Confidence 88876654 444 58888876643
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.91 E-value=0.0019 Score=58.10 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=100.1
Q ss_pred EEEecCCCcEEEEeecCCCCcEEEEEccC-Cceeeeecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCc--
Q 014007 220 CAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGT-- 292 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~-- 292 (432)
...+.++..++++. ++.||.-++.. ...+.+... -..|..+..+|+|.+||..+.. . |.|-.+..+.
T Consensus 26 ~~~~~n~t~i~~a~----~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~-V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQ----DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-E-IFVMEVPWGYSN 99 (452)
T ss_dssp EEEETTTTEEEEEE----TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-E-EEEEECCTTCSC
T ss_pred EEEEcCCCEEEEEE----CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-e-EEEEEecCcccc
Confidence 44556666666553 57888888774 333344332 2368889999999999998766 4 8888887331
Q ss_pred ----------eEEEEEeCC----CcCceEEEEECCC---CCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCC
Q 014007 293 ----------LLQEVRRGA----DRAEIYSLAFSSN---AQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSS 355 (432)
Q Consensus 293 ----------~~~~~~~~~----~~~~i~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 355 (432)
..+.+..+. ...+|..+.|+|- +..|++-..|+.|++||+......+.
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~--------------- 164 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI--------------- 164 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---------------
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---------------
Confidence 123444321 2367999999995 45899999999999999987432211
Q ss_pred ceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe--cCCeEEE
Q 014007 356 LSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG--MDGSFYR 406 (432)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~v~i 406 (432)
.+. +.. ....+......|.+++|+.++-.|...+ ..|.||-
T Consensus 165 --~L~----k~~----~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 165 --VLN----KPN----NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp --EES----CCC----SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred --chh----ccc----cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 000 000 0000112224688999999888777755 7787765
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.90 E-value=0.012 Score=52.80 Aligned_cols=190 Identities=13% Similarity=0.092 Sum_probs=102.1
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce--eEEee----cCCceEEEEEecC----ccEEEe---C----
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS----FRSEVRSVKLRRD----RIIVVL---E---- 193 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~~~----~~~~v~~~~~~~~----~~~~~~---d---- 193 (432)
.-..++|.+++.++++.. . +.|++++ +++. +..+. .......|+++|+ +.+.++ .
T Consensus 32 ~P~~ia~~pdG~l~V~e~-~-----g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAER-P-----GRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEECTTSCEEEEET-T-----TEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CceEEEEcCCCeEEEEeC-C-----CeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 456889999998777643 4 8999998 4432 22221 2456889999998 443332 1
Q ss_pred -CeEEEEEcCCCe-----ee-EEEee---ccCCcceEEEecCCCcEEEEeecC-----------CCCcEEEEEccCC---
Q 014007 194 -QKIFVYNFADLK-----LL-HQIET---IANPKGLCAVSQGVGSLVLVCPGL-----------QKGQVRVEHYASK--- 249 (432)
Q Consensus 194 -~~i~i~d~~~~~-----~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-----------~d~~i~i~d~~~~--- 249 (432)
+.|..++...+. .+ ..+.. ..+....++|.|+| .++++.... ..|.|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 678888876432 11 11221 11233579999998 566654211 1256666665541
Q ss_pred ----------ceeee-eccCCceeEEEEcC-CCCEEEEEcCCCceE------EEEECCCCc------------------e
Q 014007 250 ----------RTKFI-MAHDSRIACFALTQ-DGQLLATSSTKGTLV------RIFNTLDGT------------------L 293 (432)
Q Consensus 250 ----------~~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg~~i------~vwd~~~~~------------------~ 293 (432)
....+ .++ .....++|+| +|.++++-..... + .|.-+..+. .
T Consensus 183 ~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~-~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 260 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSG-EQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDP 260 (352)
T ss_dssp TCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC-------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred CCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCC-CCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCC
Confidence 11111 122 2356789999 6665554332222 1 122222221 1
Q ss_pred EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
+..+ . +......++| .+|.++++.-..+.|...+++..
T Consensus 261 ~~~~--~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 261 LYFW--P-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp SEEC--T-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred eEec--C-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 1111 1 1134567777 46766666556677777777654
No 305
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.85 E-value=0.0066 Score=54.09 Aligned_cols=202 Identities=7% Similarity=0.067 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCEEEEE-------------cCCcEEEEEcCCCe-eEEEeeccc----CcceeEEEEeeeC--Ce--EEEe
Q 014007 88 LLHISFNQDHGCFAAG-------------TDHGFRIYNCDPFR-EIFRRDFER----GGGIGVVEMLFRC--NI--LALV 145 (432)
Q Consensus 88 v~~~~~s~~~~~l~~~-------------~~~~i~iw~~~~~~-~~~~~~~~~----~~~~~v~~~~~~~--~~--~~~~ 145 (432)
.-.+...|+|..++++ .++.|.++|.++.. ......+.+ ........+.+.. ++ .+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 3455678888766655 23349999986321 111122221 1223455555533 22 3444
Q ss_pred cCCCCCCCCCCeEEEEeCCCC-c---eeEEeec--CCceEEEEEecCccEEEe------C--------------CeEEEE
Q 014007 146 GGGPDPQYPLNKVMIWDDHQS-R---CIGELSF--RSEVRSVKLRRDRIIVVL------E--------------QKIFVY 199 (432)
Q Consensus 146 s~~~d~~~~~~~v~iwd~~~~-~---~~~~~~~--~~~v~~~~~~~~~~~~~~------d--------------~~i~i~ 199 (432)
..... ....|.+|++..+ . .+..+.+ -...+++.+.++|.+.++ | +.|+.+
T Consensus 132 vnh~~---~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 132 VNHPG---SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EECST---TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EECCC---CCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 42221 0167888876553 2 2233332 345789999999986653 1 345555
Q ss_pred EcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cce---eeeeccCCceeEEEEcC-CCCEEE
Q 014007 200 NFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT---KFIMAHDSRIACFALTQ-DGQLLA 274 (432)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~---~~~~~~~~~i~~~~~sp-~~~~l~ 274 (432)
|. ++. +.+...-..-+.++|+||++.++++- +..+.|..|+++. +.+ +.+ ........+++.+ +|++.+
T Consensus 209 d~--~~~-~~~~~~l~~pNGia~spDg~~lYvad--t~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 209 SP--NDV-RVVAEGFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp CT--TCC-EEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEE
T ss_pred EC--CeE-EEeecCCcccCcceECCCCCEEEEEe--CCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEE
Confidence 54 332 22222233446799999999988865 3468999999864 222 223 3356678899999 598877
Q ss_pred EEcCCCceEEEEECC--CCceEEEEE
Q 014007 275 TSSTKGTLVRIFNTL--DGTLLQEVR 298 (432)
Q Consensus 275 ~~~~dg~~i~vwd~~--~~~~~~~~~ 298 (432)
++..++..|..||-. .+..+..+.
T Consensus 283 a~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 283 GCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EecCCceEEEEECCCCCCCCEEEEEE
Confidence 666554214444433 244455554
No 306
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0081 Score=52.42 Aligned_cols=192 Identities=6% Similarity=0.032 Sum_probs=115.0
Q ss_pred EEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEE-eec-------CCceEEEEE---ecCccEEE-eC------
Q 014007 133 VEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGE-LSF-------RSEVRSVKL---RRDRIIVV-LE------ 193 (432)
Q Consensus 133 ~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~-~~~-------~~~v~~~~~---~~~~~~~~-~d------ 193 (432)
-+..|+. ++.++++.-.. ++|..||...+..... +.. ...+.+|.| .+++++++ .+
T Consensus 16 E~~~wd~~~g~~~vs~l~~-----g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYK-----GRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp SCEEEETTTTEEEEEETTT-----TEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cCccCcCCCCEEEEEeccC-----CEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 3566765 56677776666 9999999875543333 222 114689999 68887776 33
Q ss_pred ---------CeEEEEEcC---CCeeeEEEeec--c-----------CCcceEEEecCCCcEEEEeecCCC-CcEEEEEcc
Q 014007 194 ---------QKIFVYNFA---DLKLLHQIETI--A-----------NPKGLCAVSQGVGSLVLVCPGLQK-GQVRVEHYA 247 (432)
Q Consensus 194 ---------~~i~i~d~~---~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~~~g~~d-~~i~i~d~~ 247 (432)
..|..||+. +++.+...... . .....+++.++|+-.+.- +.. +.|..++.+
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~---s~~~~~I~rV~pd 167 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAF---ALGMPAIARVSAD 167 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEE---EESSCEEEEECTT
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeC---CCCCCeEEEEeCC
Confidence 569999998 78776655421 1 124568888888644322 234 666666666
Q ss_pred CCceeeeec------cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe---CC--CcCceEEE-EECCCC
Q 014007 248 SKRTKFIMA------HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR---GA--DRAEIYSL-AFSSNA 315 (432)
Q Consensus 248 ~~~~~~~~~------~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~---~~--~~~~i~~~-~~s~~~ 315 (432)
......+.. .....+.|+++|+|+.|++....+. |..+|+.+.... .+.. +. .-.....| .--.+|
T Consensus 168 G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~-L~~fD~~~pv~~-~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 168 GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA-LTAFDVSKPYAW-PEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS-EEEEECSSSSCC-CEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe-EEEEcCCCCcce-eecccccCCcccccCcccccccccCC
Confidence 554443321 1223679999999999988877888 999998854330 1221 10 01123333 333477
Q ss_pred CEEEEE-eCCCeEEEEEecC
Q 014007 316 QWLAVS-SDKGTVHVFNLKV 334 (432)
Q Consensus 316 ~~l~~~-~~dg~i~iwd~~~ 334 (432)
+.|+.+ ...+.+.+.+.+.
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 774444 4555555554433
No 307
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.73 E-value=0.038 Score=53.55 Aligned_cols=223 Identities=7% Similarity=-0.017 Sum_probs=131.7
Q ss_pred EEEEEcCCcEEEEEcCCCeeE-EEeecccCcceeEEEEeeeC-CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee-cC
Q 014007 99 CFAAGTDHGFRIYNCDPFREI-FRRDFERGGGIGVVEMLFRC-NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS-FR 175 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~-~~ 175 (432)
+|+.+..+.|+..+++..... ....+ ..-..+.+++|++ ++..+.+.... +.|+.++.........+. .-
T Consensus 319 ~Ll~~~~~~i~~i~l~~~~~~~~~~~~--~~l~~~~~ld~d~~~~~ly~sD~~~-----~~I~r~~~~g~~~~~v~~~~~ 391 (619)
T 3s94_A 319 LLLLARRTDLRRISLDTPDFTDIVLQL--EDIRHAIAIDYDPVEGYIYWTDDEV-----RAIRRSFIDGSGSQFVVTAQI 391 (619)
T ss_dssp EEEEEESSCEEEEESSSTTCCCEECCC--SCCSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTSCSCEEEECSSC
T ss_pred EEEEEcccceEEEecCCCccceeEEec--cccCccEEEEEEcCCCeEEEEeCCC-----CeEEEEEcCCCccEEEEECCC
Confidence 566666666777777654321 11112 1334577888887 45555554444 899999976544333333 33
Q ss_pred CceEEEEEecC-ccEEEe---CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc
Q 014007 176 SEVRSVKLRRD-RIIVVL---EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR 250 (432)
Q Consensus 176 ~~v~~~~~~~~-~~~~~~---d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~ 250 (432)
....++++... +.+..+ .+.|.+.++... ....+. ..-.....+++.|....++++-.| ..+.|...+++...
T Consensus 392 ~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g-~~~~I~r~~~dG~~ 469 (619)
T 3s94_A 392 AHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISEDLEEPRAIVLDPMVGYMYWTDWG-EIPKIERAALDGSD 469 (619)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCCSEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCS
T ss_pred CCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECCCCCeeeEEEEcCCCcEEEecCC-CCCEEEEEccCCCc
Confidence 56788999864 444444 468999997643 333332 223345679999987777765433 35678777877754
Q ss_pred eeeee-ccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe-CCCeE
Q 014007 251 TKFIM-AHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS-DKGTV 327 (432)
Q Consensus 251 ~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i 327 (432)
...+. ..-.....|++++++..|+.+. ..+. |..+++.... .+.+... .-....+|+...+ +|+.+. ..+.|
T Consensus 470 ~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~-I~~~~~dG~~-~~~~~~~-~l~~P~glav~~~--~ly~tD~~~~~I 544 (619)
T 3s94_A 470 RVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDK-IEVMNTDGTG-RRVLVED-KIPHIFGFTLLGD--YVYWTDWQRRSI 544 (619)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEEETTTTE-EEEEESSSCC-CEEEEEC-CCCSSCCEEEETT--EEEEECTTSSCE
T ss_pred cEEEEeCCCCCCeeeEEcccCCEEEEEECCCCE-EEEEecCCCc-eEEEecc-CCCCcEEEEEECC--EEEEeecCCCeE
Confidence 44433 3345678999998766666654 4456 9999975433 3333211 1122345565433 454444 56677
Q ss_pred EEEEecCC
Q 014007 328 HVFNLKVN 335 (432)
Q Consensus 328 ~iwd~~~~ 335 (432)
...|..++
T Consensus 545 ~~~~k~~g 552 (619)
T 3s94_A 545 ERVHKRSA 552 (619)
T ss_dssp EEEESSSC
T ss_pred EEEEcCCC
Confidence 77777666
No 308
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.73 E-value=0.002 Score=66.60 Aligned_cols=219 Identities=11% Similarity=0.113 Sum_probs=135.3
Q ss_pred cEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecC
Q 014007 107 GFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRD 186 (432)
Q Consensus 107 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 186 (432)
.|.|.|+........+.+. - -+...+|....++--. . .++.|+|+++...++.+....+|.--.|-.+
T Consensus 49 ~vvIidl~~~~~~~rrpi~--A----dsAIMnP~~~iiALra-g-----~~lQiFnl~~k~klks~~~~e~VvfWkWis~ 116 (1630)
T 1xi4_A 49 QVVIIDMNDPSNPIRRPIS--A----DSAIMNPASKVIALKA-G-----KTLQIFNIEMKSKMKAHTMTDDVTFWKWISL 116 (1630)
T ss_pred eEEEEECCCCCCccccccc--c----hhhccCCCcceEEEec-C-----CeEEEeehHHhhhhcccccCCCceEEEecCC
Confidence 3888888765554333332 1 2222344444444332 2 7999999999999998887888888888765
Q ss_pred ccE-EEeCCeEEEEEcCC-CeeeEEEeec----cCCcceEEEecCCCcEEEEee----cCCCCcEEEEEccCCceeeeec
Q 014007 187 RII-VVLEQKIFVYNFAD-LKLLHQIETI----ANPKGLCAVSQGVGSLVLVCP----GLQKGQVRVEHYASKRTKFIMA 256 (432)
Q Consensus 187 ~~~-~~~d~~i~i~d~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----g~~d~~i~i~d~~~~~~~~~~~ 256 (432)
..+ ++++..|+.|++.. ..+.+.+.-| ...|-....+++.+.++++.- |...|.+.+|..+.+..+.+.+
T Consensus 117 ~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~ieg 196 (1630)
T 1xi4_A 117 NTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEG 196 (1630)
T ss_pred CeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhH
Confidence 544 45799999999964 2333333322 223334455666666654432 2356899999998888888888
Q ss_pred cCCceeEEEEcC--C-CCEEEEEcC---CCceEEEEECCCC---ce------EEEE-EeCCCcCceEEEEECCCCCEEEE
Q 014007 257 HDSRIACFALTQ--D-GQLLATSST---KGTLVRIFNTLDG---TL------LQEV-RRGADRAEIYSLAFSSNAQWLAV 320 (432)
Q Consensus 257 ~~~~i~~~~~sp--~-~~~l~~~~~---dg~~i~vwd~~~~---~~------~~~~-~~~~~~~~i~~~~~s~~~~~l~~ 320 (432)
|...-..+.... . ...++.+.. .+. ++|-++... .. +..+ .......-..++..|+.-..+..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k-Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGK-LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCce-EEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEE
Confidence 876655544431 1 223332222 256 888887542 11 1111 11011234567778887778888
Q ss_pred EeCCCeEEEEEecCCCCC
Q 014007 321 SSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 321 ~~~dg~i~iwd~~~~~~~ 338 (432)
.+.-|.|++||+.++.++
T Consensus 276 itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred EecCceEEEEecccchhh
Confidence 899999999999999854
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.73 E-value=0.063 Score=55.94 Aligned_cols=276 Identities=11% Similarity=0.084 Sum_probs=148.4
Q ss_pred CCCeEEEEEcCC------CCEEEEEc--CCcEEEEEcCCCeeEEEeecccC-cceeEEEEeeeCCeEEEecCCCCCCCCC
Q 014007 85 PPTLLHISFNQD------HGCFAAGT--DHGFRIYNCDPFREIFRRDFERG-GGIGVVEMLFRCNILALVGGGPDPQYPL 155 (432)
Q Consensus 85 ~~~v~~~~~s~~------~~~l~~~~--~~~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~~~d~~~~~ 155 (432)
...|.|+++.|. ++++++|. |+.|+|+++++.+......+... ....+ .+.......++..|-.|
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si-~l~~~~~~~~L~igl~d----- 626 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSI-LMTTFESSHYLLCALGD----- 626 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEE-EEEEETTEEEEEEEETT-----
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEE-EEEEeCCCcEEEEEeCC-----
Confidence 457999999863 36888887 55699999988776655555311 11122 22222345667777777
Q ss_pred CeEEEEeC--CCCceeEE--ee-cCCceEEEEEecCcc--EEE-eCCeEEEEEcCCCeeeEEEeeccCCc-ceEEEecC-
Q 014007 156 NKVMIWDD--HQSRCIGE--LS-FRSEVRSVKLRRDRI--IVV-LEQKIFVYNFADLKLLHQIETIANPK-GLCAVSQG- 225 (432)
Q Consensus 156 ~~v~iwd~--~~~~~~~~--~~-~~~~v~~~~~~~~~~--~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~- 225 (432)
|.+..+.+ .+|+.... .. ...++.-..+...+. .++ ++.-..+|.-+ ++.... ......+ ....|+..
T Consensus 627 G~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~l~~~~v~~~~~F~se~ 704 (1158)
T 3ei3_A 627 GALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-NVNLKEVNYMCPLNSDG 704 (1158)
T ss_dssp SEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-EBSSSCCCEEEEECCSS
T ss_pred CeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-ccChHHhceEeccCccc
Confidence 88765544 44544322 22 344555444544332 222 35555555433 332211 1111222 23445332
Q ss_pred -CCcEEEEeecCCCCcEEEEEccCC-ce-eeeeccCCceeEEEEcCCCCEEEEEcC------------------------
Q 014007 226 -VGSLVLVCPGLQKGQVRVEHYASK-RT-KFIMAHDSRIACFALTQDGQLLATSST------------------------ 278 (432)
Q Consensus 226 -~~~~~~~~~g~~d~~i~i~d~~~~-~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~------------------------ 278 (432)
.+.++++ .++.++|..++.- .. .....-...+..++++|+.+.++.+..
T Consensus 705 ~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1158)
T 3ei3_A 705 YPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS 780 (1158)
T ss_dssp STTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE
T ss_pred CCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh
Confidence 2334333 2456888877542 11 111123456777888876665443321
Q ss_pred -------------------------CCceEEEEECCCCceEEEEEeCCCcCceEEEE---ECCC-CCEEEEEe-------
Q 014007 279 -------------------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLA---FSSN-AQWLAVSS------- 322 (432)
Q Consensus 279 -------------------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~---~s~~-~~~l~~~~------- 322 (432)
-+. |++.|-.+.+.+..+.... ...+.+++ |..+ ..+|++|+
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~-i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e 858 (1158)
T 3ei3_A 781 SSVSSSKLFSSSTAPHETSFGEEVEVHN-LLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 858 (1158)
T ss_dssp EEECCCCCC----------CCCEEEEEE-EEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTC
T ss_pred hcccccccccccccCchhhcCCceeeEE-EEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCC
Confidence 123 7888888888887777543 23445544 4333 46888876
Q ss_pred ---CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEe
Q 014007 323 ---DKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILG 399 (432)
Q Consensus 323 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 399 (432)
..|.|++|++...+ + . +..-...++.|++++-- +|++|+..
T Consensus 859 ~~~~~Gri~vf~v~~~k-L------------------~---------------lv~~~~v~g~v~al~~~-~g~Lla~i- 902 (1158)
T 3ei3_A 859 AEPKQGRIVVFQYSDGK-L------------------Q---------------TVAEKEVKGAVYSMVEF-NGKLLASI- 902 (1158)
T ss_dssp SSCCCEEEEEEEEETTE-E------------------E---------------EEEEEEESSCEEEEEEE-TTEEEEEE-
T ss_pred CCCCceEEEEEEEECCE-E------------------E---------------EEEEEEcCCcCEEEeee-CCEEEEEc-
Confidence 24788888887332 0 0 11122235678777632 45444433
Q ss_pred cCCeEEEEEecC
Q 014007 400 MDGSFYRCQFDP 411 (432)
Q Consensus 400 ~dg~v~iw~~~~ 411 (432)
..+|++|++..
T Consensus 903 -g~~l~vy~l~~ 913 (1158)
T 3ei3_A 903 -NSTVRLYEWTT 913 (1158)
T ss_dssp -TTEEEEEEECT
T ss_pred -CCEEEEEECCC
Confidence 47899999954
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.73 E-value=0.023 Score=50.87 Aligned_cols=229 Identities=12% Similarity=0.050 Sum_probs=121.0
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc--cCcceeEEEEeeeCC----eEEEecCCCCCCCCCCeE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN----ILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~s~~~d~~~~~~~v 158 (432)
-..-..|+|.|+|+++++-..+.|++++ .++......+. .........++++++ +.+.++......-..+.|
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 3456799999999977776665588887 33322212211 123456788999997 444443221000000467
Q ss_pred EEEeCCCCc-----ee-EEeec----CCceEEEEEecCccEEEeC----------------CeEEEEEcCCC--------
Q 014007 159 MIWDDHQSR-----CI-GELSF----RSEVRSVKLRRDRIIVVLE----------------QKIFVYNFADL-------- 204 (432)
Q Consensus 159 ~iwd~~~~~-----~~-~~~~~----~~~v~~~~~~~~~~~~~~d----------------~~i~i~d~~~~-------- 204 (432)
..|+...+. .+ ..+.. ......++|.|||.+.+++ +.|..++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 778766432 11 11221 1234689999999776653 35655654320
Q ss_pred ----eeeEEE-eeccCCcceEEEecCCCcEEEEeecCCCC-------cEEEEEccC-----------------Cceeeee
Q 014007 205 ----KLLHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKG-------QVRVEHYAS-----------------KRTKFIM 255 (432)
Q Consensus 205 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-------~i~i~d~~~-----------------~~~~~~~ 255 (432)
.....+ .++.+ ...++|+++...++++-.| .+. .|.+..-.. .....+
T Consensus 188 ~~~~~~~~i~a~G~rn-p~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~- 264 (352)
T 2ism_A 188 GRRGARPEVYSLGHRN-PQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW- 264 (352)
T ss_dssp TCTTSCTTEEEECCSE-ECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred CCCCCCccEEEEcCCC-cccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence 011111 12222 2468899965566666544 232 233332111 011111
Q ss_pred ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce------EEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 256 AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 256 ~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.+......++| .+|.++++.-..+. |...++..... ...+.. ....+..+++.|||.++++..
T Consensus 265 ~~~~ap~G~~~-~~G~l~v~~~~~~~-v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 265 PQGFPPGNLAF-FRGDLYVAGLRGQA-LLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp TTCCCEEEEEE-ETTEEEEEETTTTE-EEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred CCCCCCcceEE-ECCEEEEEECCCCE-EEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 22234567777 46776666555666 77777654331 122222 225789999999998776654
No 311
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.59 E-value=0.034 Score=49.17 Aligned_cols=230 Identities=10% Similarity=-0.001 Sum_probs=121.1
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc-cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE-RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDD 163 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~ 163 (432)
...+.+|.|++ +..++++..+.|.. ..+.++ ....... ......+..+.+.+++..++.+.. +.|..- .
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------g~v~~S-~ 148 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGSAEMITNV------GAIYRT-K 148 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTEEEEEETT------CCEEEE-S
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCCEEEEeCC------ccEEEE-c
Confidence 44688999986 55566655543332 333222 1111110 012234566766666666665543 544332 1
Q ss_pred CCCceeEEee--cCCceEEEEEecCccEEEe--CCeEEEEEcCCCeeeEEEe-eccCCcceEEEecCCCcEEEEeecCCC
Q 014007 164 HQSRCIGELS--FRSEVRSVKLRRDRIIVVL--EQKIFVYNFADLKLLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQK 238 (432)
Q Consensus 164 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d 238 (432)
..|+.-.... ....+..+.+.+++.+++. ++.++.-+-..++.-..+. .....+..+.+.+++. ++++. .+
T Consensus 149 DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~---~~ 224 (327)
T 2xbg_A 149 DSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIV---NG 224 (327)
T ss_dssp STTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEE---TT
T ss_pred CCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEe---CC
Confidence 2343332232 4567889999999887774 4554443211122222221 2234455677777764 34332 46
Q ss_pred CcEEEEEccCCce-eeee----ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEEC
Q 014007 239 GQVRVEHYASKRT-KFIM----AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFS 312 (432)
Q Consensus 239 ~~i~i~d~~~~~~-~~~~----~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s 312 (432)
|.+++.+.+.+.. ..+. .+...+.++.+.+++.+++++. ++. | ++....++.-..+... .....+.++.|.
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~-i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~ 301 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA-L-LCSQDGGQTWQQDVDVKKVPSNFYKILFF 301 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC-E-EEESSTTSSCEECGGGTTSSSCCCEEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe-E-EEeCCCCcccEEcCccCCCCCCeEEEEEE
Confidence 7777664332211 1111 1234588999998887766654 676 6 4444555544444321 123567889887
Q ss_pred CCCCEEEEEeCCCeEEEEEe
Q 014007 313 SNAQWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 313 ~~~~~l~~~~~dg~i~iwd~ 332 (432)
++++ +++++.+|.|.-++-
T Consensus 302 ~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 302 SPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp ETTE-EEEECSTTEEEEECC
T ss_pred CCCc-eEEEcCCceEEEEcC
Confidence 6555 556667898776654
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.53 E-value=0.037 Score=48.12 Aligned_cols=230 Identities=10% Similarity=0.085 Sum_probs=112.6
Q ss_pred CCCEEEEEc-C------CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-
Q 014007 96 DHGCFAAGT-D------HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR- 167 (432)
Q Consensus 96 ~~~~l~~~~-~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~- 167 (432)
++.+++.|+ . +.+.+||..+.+-.....+. ....-..+....+..++++|..+ ......+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~~~~~d~~~~~~ 90 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASVSLHDRIYVIGGYDG-RSRLSSVECLDYTADED 90 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCBCS-SCBCCCEEEEETTCCTT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCC--hhhccccEEEECCEEEEEcCCCC-CccCceEEEEECCCCCC
Confidence 445666665 2 23888998776644333332 11111222233444455544321 1112579999988765
Q ss_pred --eeEE--eecCCceEEEEEecCccEEEeC--------CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 168 --CIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 168 --~~~~--~~~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
-... +.....-.++... ++.+++.. ..+.+||+.+.+-...-..........+...+ +.++++ +|
T Consensus 91 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~-GG 167 (301)
T 2vpj_A 91 GVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVAS-GVIYCL-GG 167 (301)
T ss_dssp CCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEET-TEEEEE-CC
T ss_pred CeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEEC-CEEEEE-CC
Confidence 2222 2211112222332 44444432 36899998876533221111111112222223 445443 34
Q ss_pred CC----CCcEEEEEccCCceeeeeccCC---ceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCceEEEEEeCCCc
Q 014007 236 LQ----KGQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADR 303 (432)
Q Consensus 236 ~~----d~~i~i~d~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~~~~~~~~~~~ 303 (432)
.. ...+.+||..+..-..+..... .-..+.+ ++++++.|+.+ .. +.+||+.+.+-...-......
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r 244 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTTVTSMTTPR 244 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEEECCCSSCC
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEECCCCCCcc
Confidence 21 2568889988765444322111 1122222 67777887764 35 899999877543321111111
Q ss_pred CceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
.....+.+ ++++++.|+.+ ..+.+||+++.+
T Consensus 245 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 245 CYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11222232 67777777754 457888887654
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.51 E-value=0.048 Score=48.82 Aligned_cols=231 Identities=10% Similarity=0.038 Sum_probs=123.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc--cCcceeEEEEeeeCC----eEEEecCCC--CCCCCCC
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE--RGGGIGVVEMLFRCN----ILALVGGGP--DPQYPLN 156 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~----~~~~~s~~~--d~~~~~~ 156 (432)
-.....|+|.|+|+++++-..+.|++++. .++ .....+. .........++++++ +.+.++... ...-...
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34578999999999777766756888863 333 2112211 123456788999986 554444321 0000003
Q ss_pred eEEEEeCCCC-------cee-EEee--cCCceEEEEEecCccEEEeC----------------CeEEEEEcCCCee----
Q 014007 157 KVMIWDDHQS-------RCI-GELS--FRSEVRSVKLRRDRIIVVLE----------------QKIFVYNFADLKL---- 206 (432)
Q Consensus 157 ~v~iwd~~~~-------~~~-~~~~--~~~~v~~~~~~~~~~~~~~d----------------~~i~i~d~~~~~~---- 206 (432)
.|..|+...+ +.+ ..+. .......|+|.|||.+.++. +.|..++.. ++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCC
Confidence 5777776543 111 1122 12235679999999877642 345555543 321
Q ss_pred ----eEEE-eeccCCcceEEEecCCCcEEEEeecCCCC--cEEEEEccC-----------------CceeeeeccCCcee
Q 014007 207 ----LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKG--QVRVEHYAS-----------------KRTKFIMAHDSRIA 262 (432)
Q Consensus 207 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~--~i~i~d~~~-----------------~~~~~~~~~~~~i~ 262 (432)
...+ .++.++ ..++|+++...++++-.+ .+. .|.+..-.. .....+........
T Consensus 185 pf~~~~i~a~G~rnp-~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~ 262 (354)
T 3a9g_A 185 PFPNSPIWSYGHRNP-QGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS 262 (354)
T ss_dssp SSTTCCEEEECCSCC-CEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred CCCCCcEEEEccCCc-ceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence 1111 223333 468899955566665433 222 233322110 01111111233567
Q ss_pred EEEEc-------CCCCEEEEEcCCCceEEEEECCCC-ceE--EEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 263 CFALT-------QDGQLLATSSTKGTLVRIFNTLDG-TLL--QEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 263 ~~~~s-------p~~~~l~~~~~dg~~i~vwd~~~~-~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.++|. .+|.++++.-..+. |...++... +.. ..+... ....+..+++.|||.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~-v~~~~~~~~g~~~~~~~~~~~-~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSM-LAAVNFGDNMEVRKISTFFKN-VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTE-EEEEEECGGGCEEEEEEECTT-TSCCEEEEEECTTSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCE-EEEEEECCCCcccceeeeccC-CCCCeeEEEECCCCcEEEEEe
Confidence 88883 46777766666667 888888753 332 222211 135789999999998766654
No 314
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.50 E-value=0.0041 Score=64.41 Aligned_cols=233 Identities=13% Similarity=0.163 Sum_probs=145.2
Q ss_pred EEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEee-eCCeEEEecCCCCCCCCCCeEEEEeCCC-Cc
Q 014007 90 HISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF-RCNILALVGGGPDPQYPLNKVMIWDDHQ-SR 167 (432)
Q Consensus 90 ~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~s~~~d~~~~~~~v~iwd~~~-~~ 167 (432)
+.-.+|..+.+|.-....++|||+++........+ ...|+-+.| +++...++|. ..|+-|++.. ..
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~~l~lVT~--------~aVyHW~~~~~s~ 137 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLNTVALVTD--------NAVYHWSMEGESQ 137 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEecCCCeeEEEcC--------CeEEEeccCCCCc
Confidence 34568888888887766699999987766633333 346777777 5566777776 6899999864 24
Q ss_pred eeEEee-c----CCceEEEEEecCccEEEe----------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecC--CCcEE
Q 014007 168 CIGELS-F----RSEVRSVKLRRDRIIVVL----------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQG--VGSLV 230 (432)
Q Consensus 168 ~~~~~~-~----~~~v~~~~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 230 (432)
+++.+. | ...|..-..+++.++++. .|.+.+|..+. +..+.+++|......+.+.-+ ...++
T Consensus 138 P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 138 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLF 216 (1630)
T ss_pred cHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEE
Confidence 444444 3 456777777888887762 57888998764 334455555544433333211 11121
Q ss_pred -EEeecCCCCcEEEEEccCC-----ce-----eeeec---cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEE
Q 014007 231 -LVCPGLQKGQVRVEHYASK-----RT-----KFIMA---HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 231 -~~~~g~~d~~i~i~d~~~~-----~~-----~~~~~---~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~ 296 (432)
++.-....+.++|.++... .. ..+.. ...-..++..++.-..+..-+.-|. |.++|+.++.++..
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~-~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY-IHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCce-EEEEecccchhhhh
Confidence 1111112368888887542 10 01111 1333457777877778888889999 99999999999876
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCC
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGS 338 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 338 (432)
-+. ...+|...+-+....-++.....|.|.--.+.....+
T Consensus 296 ~ri--s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 296 NRI--SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ccc--cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 553 2355555555544344555557888777777766543
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.49 E-value=0.007 Score=54.51 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=90.1
Q ss_pred eCCeEEEEEcCCCeeeEEEeec----cCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-------------eeee
Q 014007 192 LEQKIFVYNFADLKLLHQIETI----ANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------TKFI 254 (432)
Q Consensus 192 ~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-------------~~~~ 254 (432)
.++.||.-++......+.++.. ...+..+.++|+|+.+++. | +..|.|..+..+. .+.+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~--g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty 114 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF--N--DNEIFVMEVPWGYSNVEDVSIQDAFQIFHY 114 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE--C--SSEEEEEECCTTCSCCCCHHHHHTTEEEEE
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe--c--CCeEEEEEecCccccCcccccccccceeEE
Confidence 5888998888755445555543 2256779999999977654 3 5788888877211 1122
Q ss_pred ec------cCCceeEEEEcC---CCCEEEEEcCCCceEEEEECCCCc--eEEEEE-------eCCCcCceEEEEECCCCC
Q 014007 255 MA------HDSRIACFALTQ---DGQLLATSSTKGTLVRIFNTLDGT--LLQEVR-------RGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 255 ~~------~~~~i~~~~~sp---~~~~l~~~~~dg~~i~vwd~~~~~--~~~~~~-------~~~~~~~i~~~~~s~~~~ 316 (432)
.- ...+|..+.||| .+..|++-..|+. ||+||+.... +. .++ .......|.+++|..++-
T Consensus 115 ~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~l 192 (452)
T 3pbp_A 115 SIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGL 192 (452)
T ss_dssp EGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSS
T ss_pred EcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCc
Confidence 21 256799999999 4568999999999 9999998521 11 222 112225789999999887
Q ss_pred EEEEEe--CCCeEEEE
Q 014007 317 WLAVSS--DKGTVHVF 330 (432)
Q Consensus 317 ~l~~~~--~dg~i~iw 330 (432)
.|...+ ..|.|+-.
T Consensus 193 TLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 193 TLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEECTTSCEEEEE
T ss_pred EEEEEecCCCCCEEEE
Confidence 666654 77877654
No 316
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.44 E-value=0.06 Score=48.19 Aligned_cols=192 Identities=11% Similarity=0.075 Sum_probs=106.0
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCc-eeEEee----cCCceEEEEEecC----ccEEEe--C-----
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSR-CIGELS----FRSEVRSVKLRRD----RIIVVL--E----- 193 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~-~~~~~~----~~~~v~~~~~~~~----~~~~~~--d----- 193 (432)
.....++|.+++.++++.. + +.|++++ .+++ .+..+. .......|+++|+ +.+.++ .
T Consensus 29 ~~P~~ia~~pdG~l~V~e~-~-----g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTER-P-----GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEEEEET-T-----TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEEEEeC-C-----CEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 3457888999988777644 3 8999997 4554 222221 2356889999997 444442 2
Q ss_pred ---CeEEEEEcCCC--e-----ee-EEEee-ccCCcceEEEecCCCcEEEEeecC------------CCCcEEEEEccCC
Q 014007 194 ---QKIFVYNFADL--K-----LL-HQIET-IANPKGLCAVSQGVGSLVLVCPGL------------QKGQVRVEHYASK 249 (432)
Q Consensus 194 ---~~i~i~d~~~~--~-----~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~i~d~~~~ 249 (432)
+.|..|+.... . .+ ..+.. ..+....++|.|+|. ++++. |. ..|.|..++.+..
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~-G~~~~~~~~~d~~~~~G~I~ri~~dG~ 179 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITT-GDAADPRLAQDLSSLAGKILRVDEEGR 179 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEEC-CCTTCGGGGTCTTCCSSEEEEECTTSC
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEE-CCCCCCccccCCCCCCeEEEEEcCCCC
Confidence 56778876543 1 11 11221 112335699999984 66554 32 1245666665543
Q ss_pred --------ceeee-eccCCceeEEEEcC-CCCEEEEEcCCC--ceEEEEECCCCc------------------eEEEEEe
Q 014007 250 --------RTKFI-MAHDSRIACFALTQ-DGQLLATSSTKG--TLVRIFNTLDGT------------------LLQEVRR 299 (432)
Q Consensus 250 --------~~~~~-~~~~~~i~~~~~sp-~~~~l~~~~~dg--~~i~vwd~~~~~------------------~~~~~~~ 299 (432)
....+ .++ .....++|+| +|+++++-...+ ..|.+. ..+. .+..+.
T Consensus 180 ~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~- 255 (354)
T 3a9g_A 180 PPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG- 255 (354)
T ss_dssp CCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT-
T ss_pred CCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC-
Confidence 11122 233 2356899999 676555433221 113332 2221 111220
Q ss_pred CCCcCceEEEEEC-------CCCCEEEEEeCCCeEEEEEecCC
Q 014007 300 GADRAEIYSLAFS-------SNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 300 ~~~~~~i~~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
. .......++|. .+|.++++.-..+.|...++...
T Consensus 256 ~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~ 297 (354)
T 3a9g_A 256 S-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDN 297 (354)
T ss_dssp T-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGG
T ss_pred C-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCC
Confidence 1 12457888884 56777766667778888887653
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.26 E-value=0.097 Score=46.78 Aligned_cols=239 Identities=9% Similarity=0.028 Sum_probs=123.6
Q ss_pred CCeEEEEEcCCCC-EEEEEcCCcEEEEEcCCCeeE-EEeec---ccCcceeEEEEeeeCC----eEEEecCCCCCCC--C
Q 014007 86 PTLLHISFNQDHG-CFAAGTDHGFRIYNCDPFREI-FRRDF---ERGGGIGVVEMLFRCN----ILALVGGGPDPQY--P 154 (432)
Q Consensus 86 ~~v~~~~~s~~~~-~l~~~~~~~i~iw~~~~~~~~-~~~~~---~~~~~~~v~~~~~~~~----~~~~~s~~~d~~~--~ 154 (432)
.....|+|.|+|+ ++++-..+.|++++.+. ... ....+ ..........++++|+ +.+.++......- .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 4568999999999 77666565588887432 211 00111 0122345688999984 4444442210000 0
Q ss_pred CCeEEEEeCCCC--c--eeEE-ee-c------CCceEEEEEecCccEEEe--C--------------CeEEEEEcCCCe-
Q 014007 155 LNKVMIWDDHQS--R--CIGE-LS-F------RSEVRSVKLRRDRIIVVL--E--------------QKIFVYNFADLK- 205 (432)
Q Consensus 155 ~~~v~iwd~~~~--~--~~~~-~~-~------~~~v~~~~~~~~~~~~~~--d--------------~~i~i~d~~~~~- 205 (432)
...|..|++..+ . .... +. . ......|.|.|||.+.++ | +.|.-++.. ++
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d-G~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ-GEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT-SCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC-CCC
Confidence 035777766432 1 1111 11 1 122467999999976664 2 356666654 22
Q ss_pred ------------eeEEEe-eccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCC-----------------------
Q 014007 206 ------------LLHQIE-TIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASK----------------------- 249 (432)
Q Consensus 206 ------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~----------------------- 249 (432)
....+. ++.+ ...++|++....++++-.+ .++.=.|.-+..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rn-p~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRN-PQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSE-EEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCCcCCCCCCccEEEEcCcC-ccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 111221 2222 3468888855566655433 2221122211110
Q ss_pred ---------ceeeeeccCCceeEEEEcC-------CCCEEEEEcCCCceEEEEECCCCceEEEEEeC-CCcCceEEEEEC
Q 014007 250 ---------RTKFIMAHDSRIACFALTQ-------DGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG-ADRAEIYSLAFS 312 (432)
Q Consensus 250 ---------~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~-~~~~~i~~~~~s 312 (432)
....+ .+...+..+.|.. +|.++++.-..+. |...++..++.......- .....+..+++.
T Consensus 254 ~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKD-VIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTE-EEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCE-EEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 00111 1223566777763 4677766666666 888887766544332211 112478999999
Q ss_pred CCCCEEEEEe-CCCeEEEEEe
Q 014007 313 SNAQWLAVSS-DKGTVHVFNL 332 (432)
Q Consensus 313 ~~~~~l~~~~-~dg~i~iwd~ 332 (432)
|||.++++.. .+| +||.+
T Consensus 332 pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 332 PDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp TTSCEEEEECSTTE--EEEEE
T ss_pred CCCcEEEEEeCCCC--EEEEE
Confidence 9998666543 345 44444
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.22 E-value=0.21 Score=49.88 Aligned_cols=234 Identities=9% Similarity=0.001 Sum_probs=129.5
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecc------cCcceeEEEEeeeCCeEEEecCCCCCCCCCCeE
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFE------RGGGIGVVEMLFRCNILALVGGGPDPQYPLNKV 158 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v 158 (432)
...|.++.-..+|.+.+.. .+|+..++..+.+......+. .-....|.++....++.+-++.. +-+
T Consensus 323 ~~~v~~i~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~-------~GL 394 (758)
T 3ott_A 323 GNQFYSLFRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIATD-------GSI 394 (758)
T ss_dssp CCBEEEEEECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEET-------TEE
T ss_pred CceEEEEEEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEeC-------CcH
Confidence 3468888888888766554 567777765432111000110 01234577887777765554433 678
Q ss_pred EEEeCCCCceeEEee-------cCCceEEEEEecCccEEE-e-CCeEEEEEcCCC-----eee---EEEeec----cCCc
Q 014007 159 MIWDDHQSRCIGELS-------FRSEVRSVKLRRDRIIVV-L-EQKIFVYNFADL-----KLL---HQIETI----ANPK 217 (432)
Q Consensus 159 ~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~-~-d~~i~i~d~~~~-----~~~---~~~~~~----~~~~ 217 (432)
..||..+++...... ....|.++....++.+.+ + ++-|.++|..+. ... ..+... ...+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i 474 (758)
T 3ott_A 395 NRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFI 474 (758)
T ss_dssp EEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCE
T ss_pred hhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccccccccccee
Confidence 999987765433211 124578888877776555 4 567888886431 111 111111 1234
Q ss_pred ceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeecc----CCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce
Q 014007 218 GLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAH----DSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL 293 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~ 293 (432)
..+....++. +.++. |+ .+-|..+|..++....+... ...+.++....+|.+.+ |+.. . |..||..+++.
T Consensus 475 ~~i~~d~~g~-lWi~~-~t-~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-G-l~~~~~~~~~~ 548 (758)
T 3ott_A 475 NQIIPDNEGN-VWVLL-YN-NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-G-VMRINPKDESQ 548 (758)
T ss_dssp EEEEECTTSC-EEEEE-TT-CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-E-EEEECC--CCC
T ss_pred eeEEEcCCCC-EEEEc-cC-CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-c-eEEEecCCCce
Confidence 4555555554 44321 32 35578888877666554321 24678888888887664 4444 4 88898766543
Q ss_pred EEEEE-eCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 294 LQEVR-RGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 294 ~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.. +. .+.....|.++... +|. |..++..| |..||..+.+
T Consensus 549 ~~-~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~ 588 (758)
T 3ott_A 549 QS-ISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMD 588 (758)
T ss_dssp CB-CCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCC
T ss_pred EE-ecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCce
Confidence 21 11 11112457888764 665 44455555 7788887654
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.1 Score=46.38 Aligned_cols=192 Identities=12% Similarity=0.134 Sum_probs=105.6
Q ss_pred EEEeeeCCeEEEecCC-CCCC------CCCCeEEEEeCCCC-ceeEEeec--------CCceEEEEEec--Ccc--EEEe
Q 014007 133 VEMLFRCNILALVGGG-PDPQ------YPLNKVMIWDDHQS-RCIGELSF--------RSEVRSVKLRR--DRI--IVVL 192 (432)
Q Consensus 133 ~~~~~~~~~~~~~s~~-~d~~------~~~~~v~iwd~~~~-~~~~~~~~--------~~~v~~~~~~~--~~~--~~~~ 192 (432)
-++...+++.++++++ ..|. -.+|.|.++|..+. .....+.. .-....+.+.+ ++. +++.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 3444566777766652 0000 01399999998742 12233331 23677888766 342 3333
Q ss_pred -----CCeEEEEEcCCC-ee---eEEEeec-cCCcceEEEecCCCcEEEEeec---------------CCCCcEEEEEcc
Q 014007 193 -----EQKIFVYNFADL-KL---LHQIETI-ANPKGLCAVSQGVGSLVLVCPG---------------LQKGQVRVEHYA 247 (432)
Q Consensus 193 -----d~~i~i~d~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g---------------~~d~~i~i~d~~ 247 (432)
+..|.+|++... .. +..+... -...+.+.+.++|. +++.... ...|.|..+|.
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 457788776543 22 2223221 12345678888875 2222110 01244444444
Q ss_pred CCceeeeeccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCC-Cce--EEEEEeCCCcCceEEEEECC-CCCEEEEEe
Q 014007 248 SKRTKFIMAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLD-GTL--LQEVRRGADRAEIYSLAFSS-NAQWLAVSS 322 (432)
Q Consensus 248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~-~~~--~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~ 322 (432)
+.+..+...-...+.++|+||++.|+.+. ..+. |+.|++.. ++. ...+. .....-.+++.+ +|.+.+++.
T Consensus 211 -~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~-I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 211 -NDVRVVAEGFDFANGINISPDGKYVYIAELLAHK-IHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp -TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEEEEE
T ss_pred -CeEEEeecCCcccCcceECCCCCEEEEEeCCCCe-EEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEEEec
Confidence 34444444445678999999998877665 4566 99999863 433 22342 236678899999 598877665
Q ss_pred CC-CeEEEEE
Q 014007 323 DK-GTVHVFN 331 (432)
Q Consensus 323 ~d-g~i~iwd 331 (432)
.+ +.|..|+
T Consensus 286 ~~g~~v~~~~ 295 (355)
T 3sre_A 286 PNGMRIFFYD 295 (355)
T ss_dssp SCHHHHHSCC
T ss_pred CCceEEEEEC
Confidence 33 3444443
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.19 E-value=0.097 Score=45.47 Aligned_cols=229 Identities=15% Similarity=0.188 Sum_probs=109.8
Q ss_pred CCEEEEEc-C----CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE
Q 014007 97 HGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE 171 (432)
Q Consensus 97 ~~~l~~~~-~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~ 171 (432)
+.+++.|+ + +.+.+||..+.+-.....+. ....-..+....+..++++| .+.......+.+||..+.+-...
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG-~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELP--SRRCRAGMVYMAGLVFAVGG-FNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCS--SCCBSCEEEEETTEEEEESC-BCSSSBCCCEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCC--cccccceEEEECCEEEEEeC-cCCCccccceEEECCCCCceeeC
Confidence 44555555 2 23888998776644333333 11111122233444445444 33111225789999887653222
Q ss_pred --eecCCceEEEEEecCccEEEe---C-----CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCC----
Q 014007 172 --LSFRSEVRSVKLRRDRIIVVL---E-----QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQ---- 237 (432)
Q Consensus 172 --~~~~~~v~~~~~~~~~~~~~~---d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---- 237 (432)
+.....-.+++.. ++.+++. + ..+.+||+.+.+-... .....+....+....++.++++ +|..
T Consensus 93 ~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~-GG~~~~~~ 169 (302)
T 2xn4_A 93 ANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV-APMNTRRSSVGVGVVGGLLYAV-GGYDVASR 169 (302)
T ss_dssp CCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE-CCCSSCCBSCEEEEETTEEEEE-CCEETTTT
T ss_pred CCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeec-CCCCCcccCceEEEECCEEEEE-eCCCCCCC
Confidence 2222112233333 3443332 1 3588899887653322 1111122111111123445544 3321
Q ss_pred --CCcEEEEEccCCceeeeeccC---CceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 238 --KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 238 --d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
...+.+||..+..-..+.... .....+.+ ++++++.|+.++ . +.+||..+.+-...-..........
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~~~~r~~~~ 246 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQVADMNMCRRNAG 246 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEEECCCSSCCBSCE
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEeeCCCCCCccccCe
Confidence 245888998875544332111 11122222 677888887643 5 8999988765432211110111112
Q ss_pred EEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007 308 SLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS 336 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 336 (432)
.+. -++++++.|+.++ .+.+||+.+.+
T Consensus 247 ~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 247 VCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEE--ETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEE--ECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 222 2677777777543 48889888765
No 321
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.12 E-value=0.11 Score=44.98 Aligned_cols=173 Identities=9% Similarity=0.090 Sum_probs=84.9
Q ss_pred CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC--------CeEEEEEcCCCe---eeEEEeeccCCc-ceEE
Q 014007 156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLK---LLHQIETIANPK-GLCA 221 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~---~~~~~~~~~~~~-~~~~ 221 (432)
..+.+||..+++-... +.....-.++... ++.+++.. ..+.+||+.+.+ -.. +.....+. ...+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCCCccceeE
Confidence 5789999887653221 2211111223333 44444432 368999987755 222 21111111 1122
Q ss_pred EecCCCcEEEEeecCC----CCcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCC-----CceEEEEECCC
Q 014007 222 VSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK-----GTLVRIFNTLD 290 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~ 290 (432)
... ++.++++ +|.. ...+.+||..+..-..+..... .-.+++. -++++++.|+.+ .. +.+||..+
T Consensus 109 ~~~-~~~lyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~-~~~~d~~~ 184 (301)
T 2vpj_A 109 TTL-GDMIYVS-GGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNS-VEKYDPHT 184 (301)
T ss_dssp EEE-TTEEEEE-CCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCC-EEEEETTT
T ss_pred EEE-CCEEEEE-cccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccce-EEEEeCCC
Confidence 222 3445444 3422 2468888987755443322111 1112222 267777777754 34 89999887
Q ss_pred CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 291 GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 291 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 754332111111111222222 66777777653 468888887764
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.08 E-value=0.38 Score=50.20 Aligned_cols=171 Identities=14% Similarity=0.169 Sum_probs=101.8
Q ss_pred CeEEEEeCCCCceeEEee--cCCceEEEEE---ecC-ccEEE--e-----------CCeEEEEEcCCCeeeEEEe-eccC
Q 014007 156 NKVMIWDDHQSRCIGELS--FRSEVRSVKL---RRD-RIIVV--L-----------EQKIFVYNFADLKLLHQIE-TIAN 215 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~--~~~~v~~~~~---~~~-~~~~~--~-----------d~~i~i~d~~~~~~~~~~~-~~~~ 215 (432)
+.|++.|..+.+.+..+. ....+.+++. ..+ ..+++ + .|.|++|++..++.....+ ...+
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g 886 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG 886 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence 458888988888777766 4455666553 222 23444 1 3689999987544322221 2344
Q ss_pred CcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeee-ccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC-CCce
Q 014007 216 PKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIM-AHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL-DGTL 293 (432)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~-~~~~ 293 (432)
++.+++ .-+..+ +++. ...|++|++..+...... .+-..|..+...-.+++++.|..-.. |.++..+ ....
T Consensus 887 ~v~al~--~~~g~L-la~i---g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~S-v~~~~y~~~~~~ 959 (1158)
T 3ei3_A 887 AVYSMV--EFNGKL-LASI---NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRS-VLLLAYKPMEGN 959 (1158)
T ss_dssp CEEEEE--EETTEE-EEEE---TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBC-EEEEEEETTTTE
T ss_pred cCEEEe--eeCCEE-EEEc---CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhhe-EEEEEEEcCCCe
Confidence 554443 333343 4443 489999999875322221 11122333333335778889888777 7765432 2334
Q ss_pred EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 294 LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 294 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
+..+........++++.|-.+ ..++.+..+|.|.++....
T Consensus 960 L~~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 960 FEEIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred EEEEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 445554456678899988655 4677788999999998865
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.99 E-value=0.16 Score=44.35 Aligned_cols=233 Identities=12% Similarity=0.057 Sum_probs=111.1
Q ss_pred cCCCCEEEEEcC-----CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC---CCCCCCCeEEEEeCCC
Q 014007 94 NQDHGCFAAGTD-----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQYPLNKVMIWDDHQ 165 (432)
Q Consensus 94 s~~~~~l~~~~~-----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~~~~~~v~iwd~~~ 165 (432)
.-++.+++.|+. +.+.+||..+.+-.....+. ....-.++....+..++++|.. +.......+.+||..+
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQ--VPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCC--cccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 335566666651 23889998776654333332 1111112223344455554431 2111114689999887
Q ss_pred CceeEE--eecCCceEEEEEecCccEEEe--------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeec
Q 014007 166 SRCIGE--LSFRSEVRSVKLRRDRIIVVL--------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPG 235 (432)
Q Consensus 166 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 235 (432)
.+-... +.....-.+++.. ++.+++. -..+.+||+.+.+-...-..........+... ++.+++. +|
T Consensus 100 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~-GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRIGVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAV-GG 176 (308)
T ss_dssp TEEEECCCCSSCCBTCEEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE-CC
T ss_pred CeEeECCCCCcCccccEEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEE-eC
Confidence 643222 2211111222233 4444443 24688999887643222111111111112222 3455544 34
Q ss_pred CC----CCcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCceEEEEEeCCCc
Q 014007 236 LQ----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADR 303 (432)
Q Consensus 236 ~~----d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~~~~~~~~~~~ 303 (432)
.. ...+.+||..+..-..+... ...-..+.+ ++++++.|+.+ .. +.+||+.+.+-...-......
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEECCCCSSCC
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEECCCCCCCc
Confidence 22 25688899887544333211 111122333 67777787764 45 899998876543221111011
Q ss_pred CceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
.....+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 254 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11222222 66777777643 457888887654
No 324
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.99 E-value=0.24 Score=46.33 Aligned_cols=231 Identities=8% Similarity=-0.018 Sum_probs=132.8
Q ss_pred CCCCEEEEEc-CCc-EEEEEcCCCeeEEEeecccCcceeEEEEeee--CCeEEEecCCCCC----------------CCC
Q 014007 95 QDHGCFAAGT-DHG-FRIYNCDPFREIFRRDFERGGGIGVVEMLFR--CNILALVGGGPDP----------------QYP 154 (432)
Q Consensus 95 ~~~~~l~~~~-~~~-i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~----------------~~~ 154 (432)
-||++|..-. .++ |...+++..+......+. ....+..+.|. |+..+++.++... +|
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iP--n~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y- 216 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVP--NVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY- 216 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE-
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCC--CCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc-
Confidence 3788888877 333 888889888877555554 55566666664 5555555443320 11
Q ss_pred CCeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe------------------------------------------
Q 014007 155 LNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL------------------------------------------ 192 (432)
Q Consensus 155 ~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------------------------------------------ 192 (432)
+.....|..+.+....+...+..-.....+++.+.++
T Consensus 217 -~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~ 295 (638)
T 3sbq_A 217 -TMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL 295 (638)
T ss_dssp -EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC
T ss_pred -eEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE
Confidence 2223334444444333333333333444444444331
Q ss_pred CC-eEEEEEcCC----Ce-eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC------Cce-------ee
Q 014007 193 EQ-KIFVYNFAD----LK-LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS------KRT-------KF 253 (432)
Q Consensus 193 d~-~i~i~d~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~------~~~-------~~ 253 (432)
+| .|.+.|.+. +. ....+....+ -..+.++|||+++++ +|..+.++.++|++. ..+ ..
T Consensus 296 ~g~gv~ViD~~~~~~~~~~~~~~iP~pks-PHGv~vsPDGkyi~v--~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a 372 (638)
T 3sbq_A 296 GDSKTPVLDGRKKDGKDSKFTRYVPVPKN-PHGCNTSSDGKYFIA--AGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG 372 (638)
T ss_dssp TTCCCCEEECSCBTTBCCSSEEEEEESSS-CCCEEECTTSCEEEE--ECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred CCCCeeEEccccccccCCceEEEEeCCCC-CcceeeCCCCCEEEE--cCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence 11 345555443 21 2222332222 346899999997654 567899999999985 111 11
Q ss_pred eeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC----------ceEEEEEeCCCcCceEEEEE------CCCCCE
Q 014007 254 IMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----------TLLQEVRRGADRAEIYSLAF------SSNAQW 317 (432)
Q Consensus 254 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----------~~~~~~~~~~~~~~i~~~~~------s~~~~~ 317 (432)
...-.-.....+|.++|....+...|.. |..|++... ..+.++..+ ..+-.+.- .+||++
T Consensus 373 e~e~GlGPlHt~Fd~~G~aYTtlfidSq-vvkWni~~a~~~~~g~~~~~v~~k~dv~---YqpGH~~~~~get~~~dGk~ 448 (638)
T 3sbq_A 373 EPELGLGPLHTTFDGRGNAYTTLFIDSQ-VVKWNMEEAVRAYKGEKVNYIKQKLDVH---YQPGHLHASLCETNEADGKW 448 (638)
T ss_dssp CCBCCSCEEEEEECSSSEEEEEETTTTE-EEEEEHHHHHHHHTTCCCCCEEEEEECS---SCEEEEEETTTTSTTCCSCE
T ss_pred eccCCCcccEEEECCCCceEeeeeecce-EEEEeccHHHHHhcCccCCeeeeccccc---cCCcccccCCCccCCCCccE
Confidence 1122345678899999976777778998 999998653 456666643 23333433 578888
Q ss_pred EEEEe---CCCe----------EEEEEecCCC
Q 014007 318 LAVSS---DKGT----------VHVFNLKVNS 336 (432)
Q Consensus 318 l~~~~---~dg~----------i~iwd~~~~~ 336 (432)
|++.. .|+. -.++|+...+
T Consensus 449 lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 449 LVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 88875 3443 3677775544
No 325
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.98 E-value=0.16 Score=44.23 Aligned_cols=160 Identities=9% Similarity=0.039 Sum_probs=90.7
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEEe----C-------------CeEEEEEcCCCeeeEEEeeccCCcc
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVVL----E-------------QKIFVYNFADLKLLHQIETIANPKG 218 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----d-------------~~i~i~d~~~~~~~~~~~~~~~~~~ 218 (432)
+.|+..+..... ...+.. .. +--+++++.++.. + ..|+..++..++. ..+.. . .
T Consensus 37 ~~ly~~~~dg~~-~~~l~~-~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~--~--~ 107 (302)
T 3s25_A 37 GRLYAMNIDGSN-IHKLSN-DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDP--D--P 107 (302)
T ss_dssp TEEEEEETTSCS-CEEEEE-EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEEC--S--C
T ss_pred ceEEEEcCCCCC-CEEccC-Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeec--C--C
Confidence 667766643322 333321 11 2344677766662 2 3577777765542 22321 1 2
Q ss_pred eEEEecCCCcEEEEe-ecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCCCceEEE
Q 014007 219 LCAVSQGVGSLVLVC-PGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLDGTLLQE 296 (432)
Q Consensus 219 ~~~~~~~~~~~~~~~-~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~~~~~~~ 296 (432)
...++++++.++++. ....+..|...+++......+..+.. ..++++++.|+-.+. ... |.+-++..+... .
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~-Iy~~~l~g~~~~-~ 181 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQ-LYRYDTASQSEA-L 181 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCC-EEEEETTTTEEE-E
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCce-EEEEECCCCCEE-E
Confidence 347888999887763 11245667777777766666655533 456788888876655 556 888887665544 3
Q ss_pred EEeCCCcCceEEEEECCCCCEEEEEeCC--CeEEEEEecCC
Q 014007 297 VRRGADRAEIYSLAFSSNAQWLAVSSDK--GTVHVFNLKVN 335 (432)
Q Consensus 297 ~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~ 335 (432)
+.. .... ..++|++.+|+-.... ..|..-++...
T Consensus 182 l~~----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 182 FYD----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp EEC----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred EeC----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 332 1222 3456999988876643 34555555543
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.93 E-value=0.18 Score=44.94 Aligned_cols=48 Identities=4% Similarity=-0.071 Sum_probs=26.4
Q ss_pred CcEEEEEccCCceeeeeccC--Cce-eEEEEcCCCCEEEEEcC------CCceEEEEEC
Q 014007 239 GQVRVEHYASKRTKFIMAHD--SRI-ACFALTQDGQLLATSST------KGTLVRIFNT 288 (432)
Q Consensus 239 ~~i~i~d~~~~~~~~~~~~~--~~i-~~~~~sp~~~~l~~~~~------dg~~i~vwd~ 288 (432)
..+.+||..+..-..+.... ..- .+++.. ++++++.|+. ... +.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~-v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDA-VFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCC-EEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCc-eEEEEe
Confidence 57889998875544332211 111 233322 6667777764 234 777886
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.84 E-value=0.21 Score=43.40 Aligned_cols=227 Identities=10% Similarity=0.056 Sum_probs=111.9
Q ss_pred CEEEEEc---CCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEE--e
Q 014007 98 GCFAAGT---DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGE--L 172 (432)
Q Consensus 98 ~~l~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~--~ 172 (432)
.+++.|+ .+.+.+||..+.+-.....+. ..... ..+....+..++++|.. ......+.+||..+++-... +
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~-~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPF-EKRRD-AACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCS-CCCBS-CEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCC-cccce-eEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCC
Confidence 3555665 234899998876654333333 11111 22222344455554432 11226799999887753322 2
Q ss_pred ecCCceEEEEEecCccEEEe---C------CeEEEEEcCCCeeeEEEeeccCCc-ceEEEecCCCcEEEEeecCC-----
Q 014007 173 SFRSEVRSVKLRRDRIIVVL---E------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGLQ----- 237 (432)
Q Consensus 173 ~~~~~v~~~~~~~~~~~~~~---d------~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~----- 237 (432)
.....-.+++.. ++.+++. + ..+.+||+.+.+-... .....+. ...+... ++.++++ +|..
T Consensus 89 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~~ 164 (306)
T 3ii7_A 89 PTPRDSLAACAA-EGKIYTSGGSEVGNSALYLFECYDTRTESWHTK-PSMLTQRCSHGMVEA-NGLIYVC-GGSLGNNVS 164 (306)
T ss_dssp SSCCBSCEEEEE-TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEE-CCCSSCCBSCEEEEE-TTEEEEE-CCEESCTTT
T ss_pred CccccceeEEEE-CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeC-CCCcCCcceeEEEEE-CCEEEEE-CCCCCCCCc
Confidence 221111222233 4444442 2 3588999887653322 1111111 1122222 3445544 3321
Q ss_pred ---CCcEEEEEccCCceeeeeccCCc--eeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCceEEEEEeCCCcCceE
Q 014007 238 ---KGQVRVEHYASKRTKFIMAHDSR--IACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 238 ---d~~i~i~d~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
...+.+||..+..-..+...... -.++... ++++++.|+.+ .. +.+||+.+.+-...-..........
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDN-VEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCC-EEEEETTTTEEEECCCCSCCBSCCE
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCce-EEEeeCCCCcEEECCCCCCCcccee
Confidence 35588999888654444321111 1122222 67777777654 34 8999988765332211111111223
Q ss_pred EEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 308 SLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
.+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 3333 67788888744 468888887764
No 328
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.73 E-value=0.26 Score=42.93 Aligned_cols=173 Identities=8% Similarity=0.011 Sum_probs=83.9
Q ss_pred CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC------------CeEEEEEcCCCeeeEEEeeccCCcceEE
Q 014007 156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE------------QKIFVYNFADLKLLHQIETIANPKGLCA 221 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 221 (432)
..+.+||..+++-... +.....-.+++.. ++.+++.. +.+.+||+.+.+-...-..........+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 5789999877653222 1111111223333 44444432 2488899877643221111111111122
Q ss_pred EecCCCcEEEEeecCC----CCcEEEEEccCCceeeeeccC---CceeEEEEcCCCCEEEEEcCC-----CceEEEEECC
Q 014007 222 VSQGVGSLVLVCPGLQ----KGQVRVEHYASKRTKFIMAHD---SRIACFALTQDGQLLATSSTK-----GTLVRIFNTL 289 (432)
Q Consensus 222 ~~~~~~~~~~~~~g~~----d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~ 289 (432)
... ++.++++ +|.. ...+.+||..+..-..+.... ..-..+.+ ++++++.|+.+ .. +.+||+.
T Consensus 118 ~~~-~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~ 192 (308)
T 1zgk_A 118 GVI-DGHIYAV-GGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNS-AECYYPE 192 (308)
T ss_dssp EEE-TTEEEEE-CCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCC-EEEEETT
T ss_pred EEE-CCEEEEE-cCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCce-EEEEeCC
Confidence 222 3445443 3321 246888898875443332111 11122222 67777777754 34 8899987
Q ss_pred CCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 290 DGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 290 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 193 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 193 RNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 7653322111111111222333 66777777654 468888887754
No 329
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.48 E-value=0.39 Score=41.90 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=84.6
Q ss_pred CeEEEEeCCCCceeE-EeecC-CceEEEEEecCccEEEeCC--------------eEEEEEcCCCeeeEEEeeccCCcce
Q 014007 156 NKVMIWDDHQSRCIG-ELSFR-SEVRSVKLRRDRIIVVLEQ--------------KIFVYNFADLKLLHQIETIANPKGL 219 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~-~~~~~-~~v~~~~~~~~~~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (432)
..+.+||..+++-.. .+... ..........++.+++..| .+.+||..+.+-.. +.....+...
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCcchhc
Confidence 469999988876432 11111 1222222233444444222 27888988765322 2111111111
Q ss_pred EEEecCCCcEEEEeecC-------CCCcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcC-C-----CceEE
Q 014007 220 CAVSQGVGSLVLVCPGL-------QKGQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSST-K-----GTLVR 284 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~-------~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~-d-----g~~i~ 284 (432)
.+....++.++++ +|. ....+.+||..+..-..+..... .-.+++. -++++++.|+. + .. +.
T Consensus 92 ~~~~~~~~~lyv~-GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~-~~ 168 (315)
T 4asc_A 92 FGLGEALNSIYVV-GGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNK-MC 168 (315)
T ss_dssp CEEEEETTEEEEE-CCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCC-EE
T ss_pred eeEEEECCEEEEE-eCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccce-EE
Confidence 1222224455544 341 12568889988754433321111 1112222 36677777776 2 35 89
Q ss_pred EEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCC
Q 014007 285 IFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKG-----TVHVFNLKVNS 336 (432)
Q Consensus 285 vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 336 (432)
+||..+.+-...-...........+.+ ++++++.|+.++ .+.+||+.+.+
T Consensus 169 ~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 169 VYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 999887643321111101111222222 677777777543 57888887654
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.43 E-value=0.47 Score=42.30 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=75.8
Q ss_pred eEEEEeeeCCeE-EEecCCCCCCCCCCeEEEEeCCCCcee---EEe----e-cCCceEEEEEecC----ccEEEe-----
Q 014007 131 GVVEMLFRCNIL-ALVGGGPDPQYPLNKVMIWDDHQSRCI---GEL----S-FRSEVRSVKLRRD----RIIVVL----- 192 (432)
Q Consensus 131 ~v~~~~~~~~~~-~~~s~~~d~~~~~~~v~iwd~~~~~~~---~~~----~-~~~~v~~~~~~~~----~~~~~~----- 192 (432)
....|+|.+++. ++++.. . |.|++++. .++.. ..+ . .......|+++|+ +.+.++
T Consensus 19 ~P~~i~~~pdG~~l~V~e~-~-----G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLR-G-----GELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp SEEEEEECSTTCCEEEEET-T-----TEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred CcEEEEEcCCCCEEEEEeC-C-----ceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 457889999998 776654 4 89999984 33321 111 1 2345789999995 443332
Q ss_pred -----CCeEEEEEcCCC--e--eeEE-Eeec------cCCcceEEEecCCCcEEEEeecCC------------CCcEEEE
Q 014007 193 -----EQKIFVYNFADL--K--LLHQ-IETI------ANPKGLCAVSQGVGSLVLVCPGLQ------------KGQVRVE 244 (432)
Q Consensus 193 -----d~~i~i~d~~~~--~--~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~g~~------------d~~i~i~ 244 (432)
...|..|++... + ..+. +... .+....++|.|+| .++++. |.. .|.|.-+
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~-Gd~~~~~~~q~~~~~~g~I~ri 169 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIAL-GENNQRPTAQDLDKLQGKLVRL 169 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEE-CCTTCGGGGGCTTSCTTEEEEE
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEE-CCCCCCCccCCCCCCCeEEEEE
Confidence 125666666432 1 1111 1111 1223569999998 566654 321 2567777
Q ss_pred EccCC-------------ceeee-eccCCceeEEEEcC-CCCEEEE
Q 014007 245 HYASK-------------RTKFI-MAHDSRIACFALTQ-DGQLLAT 275 (432)
Q Consensus 245 d~~~~-------------~~~~~-~~~~~~i~~~~~sp-~~~~l~~ 275 (432)
+.+.. ....+ .++ .....++|+| +|+++++
T Consensus 170 ~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 170 TDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp ETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence 76643 11122 123 3467899999 5655444
No 331
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.033 Score=49.16 Aligned_cols=135 Identities=10% Similarity=0.129 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCeeeEEEeecc-CCcceEEEe----cCCCcEEEEeecCCCCcEEEEEccCCceeeeec-----cCCcee
Q 014007 193 EQKIFVYNFADLKLLHQIETIA-NPKGLCAVS----QGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMA-----HDSRIA 262 (432)
Q Consensus 193 d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~-----~~~~i~ 262 (432)
||.|+-+|..+|+.+..++... .+. +... +.+...+++. ...||.|..++..++..+.-.. ...++.
T Consensus 19 dG~l~Ald~~tG~~~W~~~~~~~~p~--~~~~~~~~~~~~~~~vv~-p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~ 95 (339)
T 2be1_A 19 EGGLHAVDRRNGHIIWSIEPENFQPL--IEIQEPSRLETYETLIIE-PFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLH 95 (339)
T ss_dssp TSCEEEEETTTTEEEEEECGGGSCCS--EECCCSCTTTSSEEEEEC-CSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEE
T ss_pred CCeEEEEECCCCcEEEEecCCccCCc--EEecCCccccCCcEEEEE-ECCCCEEEEEECCCCcEEeeeccccceeccccc
Confidence 9999999999999988886541 111 1111 1122344332 2368999999987653321111 111221
Q ss_pred E---EEE-c----CCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCce-----EEEEEC-----CCCCEEEEEeCC
Q 014007 263 C---FAL-T----QDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEI-----YSLAFS-----SNAQWLAVSSDK 324 (432)
Q Consensus 263 ~---~~~-s----p~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i-----~~~~~s-----~~~~~l~~~~~d 324 (432)
. ... . ..+..+++|+.++. +.-.|+++|+.+.++........+ .+.... ..+..|+.+..+
T Consensus 96 ~~~~pvv~~~~~~~~~g~Vy~Gs~~g~-l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~ 174 (339)
T 2be1_A 96 LKTNIVVNDSGKIVEDEKVYTGSMRTI-MYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTI 174 (339)
T ss_dssp EECC----------CCEEEEECEEEEE-EEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEE
T ss_pred cCCCceeecccccccCCEEEEEecCCE-EEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecce
Confidence 1 000 0 13557889999999 999999999999988743211110 011110 123456667666
Q ss_pred CeEEEEE
Q 014007 325 GTVHVFN 331 (432)
Q Consensus 325 g~i~iwd 331 (432)
..+.+.+
T Consensus 175 y~v~~~~ 181 (339)
T 2be1_A 175 FELGIHS 181 (339)
T ss_dssp EECEECC
T ss_pred EEEEEEC
Confidence 6666666
No 332
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.24 E-value=0.51 Score=40.79 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=83.0
Q ss_pred CeEEEEeCCCCceeEE--eecCCceEEEEEecCccEEEeC--------CeEEEEEcCCCeeeEEEeeccCCcceEEEecC
Q 014007 156 NKVMIWDDHQSRCIGE--LSFRSEVRSVKLRRDRIIVVLE--------QKIFVYNFADLKLLHQIETIANPKGLCAVSQG 225 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (432)
..+..||+.+.+-... +.....-.+++.. ++.+++.. ..+.+||..+.+-...-..........+...
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 5688999887653222 1111111223333 44444431 3588999887653222111111111122222
Q ss_pred CCcEEEEeecCCC----CcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCC-------CceEEEEECCCCc
Q 014007 226 VGSLVLVCPGLQK----GQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTK-------GTLVRIFNTLDGT 292 (432)
Q Consensus 226 ~~~~~~~~~g~~d----~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~d-------g~~i~vwd~~~~~ 292 (432)
++.++++ +|... ..+.+||..+..-..+..... .-.+++. -++++++.|+.+ .. +.+||..+.+
T Consensus 108 ~~~iyv~-GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~-~~~yd~~~~~ 184 (302)
T 2xn4_A 108 NGLLYAV-GGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLST-VECYNATTNE 184 (302)
T ss_dssp TTEEEEE-EEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCC-EEEEETTTTE
T ss_pred CCEEEEE-cCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccE-EEEEeCCCCc
Confidence 3445444 34221 357788887755443322111 1112222 266777777642 34 8899988765
Q ss_pred eEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 293 LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 293 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 185 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 185 WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 4332111111111222222 66777777654 368888887654
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.23 E-value=0.6 Score=41.49 Aligned_cols=140 Identities=14% Similarity=0.051 Sum_probs=63.4
Q ss_pred CeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC-----CCCcEEEEEc--cCCceeeeecc---CCceeE
Q 014007 194 QKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL-----QKGQVRVEHY--ASKRTKFIMAH---DSRIAC 263 (432)
Q Consensus 194 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~d~~i~i~d~--~~~~~~~~~~~---~~~i~~ 263 (432)
..+.+||+.+.+-...-..........+....++.++++ +|. ....+.+||+ .+..-..+... ......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~-GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLI-NGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEE-CCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEE-eeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 478999988765333211111111112222234455544 332 1345777877 33332222211 111111
Q ss_pred EEEcCCCCEEEEEcCC----------------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 264 FALTQDGQLLATSSTK----------------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 264 ~~~sp~~~~l~~~~~d----------------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
.+...++++++.|+.+ .. +.+||+.+.+-...-........-..+. .++++++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYS-TDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEEC-CEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceee-EEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEe
Confidence 1222367777777742 24 7899988765433222111111222222 477888888
Q ss_pred eCCC------eEEEEEecCCCC
Q 014007 322 SDKG------TVHVFNLKVNSG 337 (432)
Q Consensus 322 ~~dg------~i~iwd~~~~~~ 337 (432)
+.++ .|.++++++++.
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSC
T ss_pred eeCCCCCEeeeEEEEEEcCcEe
Confidence 7542 466678887763
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.17 E-value=0.58 Score=40.76 Aligned_cols=228 Identities=12% Similarity=0.115 Sum_probs=106.9
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCC-----CCCCCCCCeEEEEeCCCCceeEE--
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGG-----PDPQYPLNKVMIWDDHQSRCIGE-- 171 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-----~d~~~~~~~v~iwd~~~~~~~~~-- 171 (432)
+++.|+ +.+.+||..+.+-.. ..+.......-.++....+..++++|. .........+.+||..+++-...
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344554 568899988776543 333211122223333344455555552 11000012388899887653221
Q ss_pred eecCCceEEEEEecCccEEEeC-----------CeEEEEEcCCCeeeEEEeeccCCc-ceEEEecCCCcEEEEeecC-C-
Q 014007 172 LSFRSEVRSVKLRRDRIIVVLE-----------QKIFVYNFADLKLLHQIETIANPK-GLCAVSQGVGSLVLVCPGL-Q- 237 (432)
Q Consensus 172 ~~~~~~v~~~~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~- 237 (432)
+.....-.+++.. ++.+++.. ..+.+||+.+.+-.. +.....+. ...+... ++.+++. +|. .
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~ 160 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE-SDPLPYVVYGHTVLSH-MDLVYVI-GGKGSD 160 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTEEEEE-CCBCTT
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeE-CCCCCCcccceeEEEE-CCEEEEE-eCCCCC
Confidence 1111111222333 44444322 358899988764322 11111111 1222223 3345443 342 1
Q ss_pred ---CCcEEEEEccCCceeeeeccCC---ceeEEEEcCCCCEEEEEcCCCc----eEEEEECCCCceEEEEEeCCCcCceE
Q 014007 238 ---KGQVRVEHYASKRTKFIMAHDS---RIACFALTQDGQLLATSSTKGT----LVRIFNTLDGTLLQEVRRGADRAEIY 307 (432)
Q Consensus 238 ---d~~i~i~d~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~----~i~vwd~~~~~~~~~~~~~~~~~~i~ 307 (432)
-..+.+||..+..-..+..... .-.++.+ ++++++.|+.++. .+.+||..+.+-...-..........
T Consensus 161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 2468889988754433322111 1122222 6777888876542 28899988775433211111111122
Q ss_pred EEEECCCCCEEEEEeCC--------------CeEEEEEecCCC
Q 014007 308 SLAFSSNAQWLAVSSDK--------------GTVHVFNLKVNS 336 (432)
Q Consensus 308 ~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 336 (432)
.+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 2233 66777777653 246778877654
No 335
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.87 E-value=0.099 Score=42.59 Aligned_cols=103 Identities=17% Similarity=0.112 Sum_probs=62.4
Q ss_pred CCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCceeeeeccCCc--------eeEEEEcCCCCEEEEEcCCCceEEEE
Q 014007 215 NPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKRTKFIMAHDSR--------IACFALTQDGQLLATSSTKGTLVRIF 286 (432)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~--------i~~~~~sp~~~~l~~~~~dg~~i~vw 286 (432)
..+..++|+|++. ++.+ .+|.+.-.+..+.....+.+.... -.++.|.|+|.+.++ .||. |+-+
T Consensus 41 ~~~~~laf~P~G~-LYaV----~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~-iyr~ 112 (236)
T 1tl2_A 41 SNFKFLFLSPGGE-LYGV----LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDK-LYKA 112 (236)
T ss_dssp TTCSEEEECTTSC-EEEE----ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTE-EEEE
T ss_pred ccceeEEECCCcc-EEEE----eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCE-EEEe
Confidence 3567899999776 4433 356666666544222222111222 378999999987777 5688 8877
Q ss_pred ECCCCceE------EEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEE
Q 014007 287 NTLDGTLL------QEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVH 328 (432)
Q Consensus 287 d~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 328 (432)
+-.+...- .++-.. .=..+..|.|.|+|.+.++. |+.++
T Consensus 113 ~pP~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 113 SPPQSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp SCCCSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CCCcCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe--CCcEE
Confidence 75332111 122211 11468999999999987776 77754
No 336
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.73 E-value=0.047 Score=44.49 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=65.2
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCce------EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEe
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTL------LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNL 332 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~ 332 (432)
..+..++|+|+|.+.++ .+|. ++-.+..+... -..+-...- ..-..+.|.|+|.+.++ .||.|+-++-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~-Ly~~~~~t~~~~~W~~s~t~IG~~Gw-~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDK-IYKGTPPTHDNDNWMGRAKKIGNGGW-NQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTE-EEEESCCCSTTCCHHHHCEEEECSCG-GGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCe-EEEECCCCCCcccccccccEeccccc-ccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 36779999999986666 6777 77666544211 122221111 12478999999998877 5698876664
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEE
Q 014007 333 KVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYR 406 (432)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~i 406 (432)
.+.... .+...-.+.-...| ..+..|.|.|+|.+-++. ||.++-
T Consensus 115 P~~~~~-------------------~Wl~~a~~vg~~gw---------~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 115 PQSDTD-------------------NWIARATEVGSGGW---------SGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp CCSTTC-------------------CHHHHSEEEECSSG---------GGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred CcCCCC-------------------ceeccccEeccCCC---------CceEEEEECCCceEEEEe--CCcEEe
Confidence 332210 00000000000011 347889999999987766 887554
No 337
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.61 E-value=1.1 Score=39.59 Aligned_cols=231 Identities=10% Similarity=0.022 Sum_probs=122.0
Q ss_pred cCCCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEEcCCCeeEEEeecc---cCcceeEEEEeeeCC----eEEEec--CCC
Q 014007 80 TSSSPPPTLLHISFNQDHGCFAAGT-DHGFRIYNCDPFREIFRRDFE---RGGGIGVVEMLFRCN----ILALVG--GGP 149 (432)
Q Consensus 80 ~~~~~~~~v~~~~~s~~~~~l~~~~-~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~----~~~~~s--~~~ 149 (432)
+....-.....|+|.|||++|++-. .+.|++++.+.++......+. .........++++|+ +.+.++ ...
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3334455778999999999888877 445888875544432222221 134567889999884 444332 223
Q ss_pred CCCCCCCeEEEEeCCCC----------cee-EEee--cCCceEEEEEecCccEEEe--C--------------CeEEEEE
Q 014007 150 DPQYPLNKVMIWDDHQS----------RCI-GELS--FRSEVRSVKLRRDRIIVVL--E--------------QKIFVYN 200 (432)
Q Consensus 150 d~~~~~~~v~iwd~~~~----------~~~-~~~~--~~~~v~~~~~~~~~~~~~~--d--------------~~i~i~d 200 (432)
+ +.|.-|.+..+ +.+ ..+. .......|.|.|||.+.++ | |.|.-++
T Consensus 106 ~-----~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 106 D-----NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp S-----EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred C-----CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence 3 67777766542 111 1122 1234567999999976664 1 4455555
Q ss_pred cCCCee--------eEEE-eeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccCCc-------------------ee
Q 014007 201 FADLKL--------LHQI-ETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYASKR-------------------TK 252 (432)
Q Consensus 201 ~~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-------------------~~ 252 (432)
.. ++. ...+ .++.++ ..++|+|++. ++++-.| .++.-.|.-+..+. +.
T Consensus 181 ~d-G~ip~~nPf~~~~i~a~G~RNp-~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~ 256 (347)
T 3das_A 181 PD-GEPAPGNPFPGSPVYSYGHRNV-QGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVA 256 (347)
T ss_dssp TT-SSBCTTCSSTTCCEEEBCCSBC-CEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSE
T ss_pred CC-CCccCCCCCCCCeEEeeCCCCc-ceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcE
Confidence 43 220 1111 233333 3688888754 4443322 33322232222211 11
Q ss_pred eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceE---EEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 253 FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLL---QEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 253 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.+..+......++|. +|..++..-..+. |....+.....+ ..+-.. ....+..++..|||.++++..
T Consensus 257 ~~~~~~~ap~G~~~~-~g~~~~~~l~~~~-l~~v~~~~~~~~~~~e~~l~~-~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 257 QWSTDEASPSGIAYA-EGSVWMAGLRGER-LWRIPLKGTAAAADPQAFLEG-EYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EECTTTCCEEEEEEE-TTEEEEEESTTCS-EEEEEEETTEESSCCEEESTT-TSSCEEEEEEEETTEEEEEEC
T ss_pred ecCCCCCCCcceEEE-cCceeeccccCCE-EEEEEecCCceecceEEeecC-CCCCccEEEECCCCcEEEEEc
Confidence 111122345667775 4655555555555 666666544321 122211 235789999999998766654
No 338
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.097 Score=46.16 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=58.8
Q ss_pred EEEEc-CCcEEEEEcCCCeeEEEeecccCcceeEEEEee---eCCeEEEecC-CCCCCCCCCeEEEEeCCCCceeEEeec
Q 014007 100 FAAGT-DHGFRIYNCDPFREIFRRDFERGGGIGVVEMLF---RCNILALVGG-GPDPQYPLNKVMIWDDHQSRCIGELSF 174 (432)
Q Consensus 100 l~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~s~-~~d~~~~~~~v~iwd~~~~~~~~~~~~ 174 (432)
+++++ |+.|.-+|.++++........ .......... ..++..++.. ..| |.|+.++..+|.....+..
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~d-----G~l~a~~~~~G~~~~~~~~ 85 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGD-----GNIYYFNAHQGLQKLPLSI 85 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTT-----TEEEEEETTTEEEEEEEEH
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCC-----CEEEEEECCCCcEEeeecc
Confidence 34444 555777777777666543331 1112222110 1133344333 456 9999999988866555541
Q ss_pred -----CCceEE---EEE------ecCccEEE--eCCeEEEEEcCCCeeeEEEee
Q 014007 175 -----RSEVRS---VKL------RRDRIIVV--LEQKIFVYNFADLKLLHQIET 212 (432)
Q Consensus 175 -----~~~v~~---~~~------~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~ 212 (432)
..++.. ..+ +.++.+++ .++.+...|+.+|+.+..+..
T Consensus 86 ~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 86 RQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 222221 001 14555555 388999999999999988754
No 339
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.59 E-value=1.1 Score=39.54 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=105.0
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCce--eEEee-----cCCceEEEEEecC----ccEEEe-----C
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRC--IGELS-----FRSEVRSVKLRRD----RIIVVL-----E 193 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~--~~~~~-----~~~~v~~~~~~~~----~~~~~~-----d 193 (432)
..-+.|+|.+++.++++--.. |.|++++...++. +..+. .......|+++|+ +.+.++ +
T Consensus 32 ~~P~~ia~~pdG~llVter~~-----G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDE-----ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTT-----CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCceEEEEcCCCcEEEEEecC-----CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 455789999999888887645 8999998665543 22221 3456889999985 433331 4
Q ss_pred CeEEEEEcCCC----------eee-EEEee-ccCCcceEEEecCCCcEEEEeecC------------CCCcEEEEEccCC
Q 014007 194 QKIFVYNFADL----------KLL-HQIET-IANPKGLCAVSQGVGSLVLVCPGL------------QKGQVRVEHYASK 249 (432)
Q Consensus 194 ~~i~i~d~~~~----------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~------------~d~~i~i~d~~~~ 249 (432)
+.|.-|.+..+ +.+ ..+.. ..+....+.|.|+| .+++.. |. ..|.|.-++.+..
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~dG~ 184 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGT-GESGDTGLSQDRKSLGGKILRMTPDGE 184 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEEC-BCTTCGGGTTCTTCSTTCEEEECTTSS
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEE-CCCCCCccccCCCCCCCEEEEEeCCCC
Confidence 56766765541 111 11211 12234569999998 466654 31 2356655565543
Q ss_pred --------ceeee-eccCCceeEEEEcCCCCEEEEEc-CCCceEEEEECCCCc------------------eEEEEEeCC
Q 014007 250 --------RTKFI-MAHDSRIACFALTQDGQLLATSS-TKGTLVRIFNTLDGT------------------LLQEVRRGA 301 (432)
Q Consensus 250 --------~~~~~-~~~~~~i~~~~~sp~~~~l~~~~-~dg~~i~vwd~~~~~------------------~~~~~~~~~ 301 (432)
....+ .+|. ....++|+|+|.+.++-. .++. =.|--+..+. .+..+..
T Consensus 185 ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~-deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-- 260 (347)
T 3das_A 185 PAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTW-DELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-- 260 (347)
T ss_dssp BCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSC-EEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT--
T ss_pred ccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCC-ceeeEEcCCCEecCCcccCCCCCccccCCcEecCC--
Confidence 11122 2343 356899999887665532 2222 2222222221 1222221
Q ss_pred CcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 302 DRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 302 ~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
+......|+|. +|..+...-..+.|....+...
T Consensus 261 ~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 261 DEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp TTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred CCCCCcceEEE-cCceeeccccCCEEEEEEecCC
Confidence 11345677775 4555555555566666666543
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.37 E-value=1.2 Score=38.54 Aligned_cols=157 Identities=8% Similarity=-0.008 Sum_probs=89.2
Q ss_pred CeEEEEeCCCCceeEEeecCCceEEEEEecCccEEE-eC----C--eEEEEEcCCCeeeEEEeeccCCcceEEEecCCCc
Q 014007 156 NKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV-LE----Q--KIFVYNFADLKLLHQIETIANPKGLCAVSQGVGS 228 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~d----~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (432)
..|+..++..++... +. ... +..+++++..++ .+ + .|+..++. +.....+..+. + ..++++++.
T Consensus 88 ~~Iy~i~~dg~~~~~-l~-~~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~--~--~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTV-LD-PDP--CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHY--L--FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEE-EE-CSC--EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSC--C--CCSEEETTE
T ss_pred CeEEEEeCCCCcceE-ee-cCC--ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCC--c--eEeeEECCE
Confidence 578888877665322 22 122 225667776666 23 3 56666765 33344443332 2 457889998
Q ss_pred EEEEeecCCCCcEEEEEccCCceeeeeccCCceeEEEEcCCCCEEEEEcCC--CceEEEEECCCCceEEEEEeCCCcCce
Q 014007 229 LVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGQLLATSSTK--GTLVRIFNTLDGTLLQEVRRGADRAEI 306 (432)
Q Consensus 229 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--g~~i~vwd~~~~~~~~~~~~~~~~~~i 306 (432)
++... .....|.+.++.++..+.+.. +... ..++|++.+|+-.... .. |..-++.... ...+.. ..+
T Consensus 159 iy~t~--~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~-I~~~~ldG~~-~~~Lt~----~~~ 227 (302)
T 3s25_A 159 FYYNN--PKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNA-IVHVNINNPN-PVVLTE----ANI 227 (302)
T ss_dssp EEEEC--TTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTE-EEEECSSSCC-CEECSC----SCE
T ss_pred EEEEe--CCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcE-EEEEECCCCC-eEEEeC----CCc
Confidence 87654 246788888888766555532 2222 3466988888765543 24 6666665444 333331 233
Q ss_pred EEEEECCCCCEEEEEeC--CCeEEEEEecC
Q 014007 307 YSLAFSSNAQWLAVSSD--KGTVHVFNLKV 334 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~--dg~i~iwd~~~ 334 (432)
..|+|++++|.-+.. .+.|..-++..
T Consensus 228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp --EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred --ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 347788888876643 34555555543
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.27 E-value=1.2 Score=41.07 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=39.6
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeC------CCcCceEEEEECCC---CCEEEEE
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRG------ADRAEIYSLAFSSN---AQWLAVS 321 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~------~~~~~i~~~~~s~~---~~~l~~~ 321 (432)
.....|+|.|+|+++++-...+. |++++..+++........ ........|+|+|+ +.+|..+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~-I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~ 97 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGK-ILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS 97 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCE-EEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEcCCCE-EEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence 45679999999997776555457 888876556543222211 02356789999995 4444444
No 342
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.18 E-value=1.4 Score=38.25 Aligned_cols=175 Identities=12% Similarity=0.145 Sum_probs=82.4
Q ss_pred CeEEEEeCCCCceeE-Eeec-CCceEEEEEecCccEEEeCC--------------eEEEEEcCCCeeeEEEeeccCCcce
Q 014007 156 NKVMIWDDHQSRCIG-ELSF-RSEVRSVKLRRDRIIVVLEQ--------------KIFVYNFADLKLLHQIETIANPKGL 219 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~~d~--------------~i~i~d~~~~~~~~~~~~~~~~~~~ 219 (432)
..+..||..+++-.. .+.. ...........++.+++..| .+.+||..+.+-.. +.....+...
T Consensus 24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-LPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-CSCBSSCBCS
T ss_pred cceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-CCCCCccccc
Confidence 358899988776433 1111 11112222233444444322 17788887754322 1111111111
Q ss_pred EEEecCCCcEEEEeecCC--C----CcEEEEEccCCceeeeeccCCc--eeEEEEcCCCCEEEEEcC------CCceEEE
Q 014007 220 CAVSQGVGSLVLVCPGLQ--K----GQVRVEHYASKRTKFIMAHDSR--IACFALTQDGQLLATSST------KGTLVRI 285 (432)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~--d----~~i~i~d~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~------dg~~i~v 285 (432)
.+....++.++++ +|.. . ..+.+||..+..-..+.....+ -.+++. .++++++.|+. -.. +.+
T Consensus 103 ~~~~~~~~~iyv~-GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~-~~~ 179 (318)
T 2woz_A 103 FGLGEVDDKIYVV-AGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNR-VFI 179 (318)
T ss_dssp CEEEEETTEEEEE-EEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCC-EEE
T ss_pred cceEEECCEEEEE-cCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccce-EEE
Confidence 1122223455544 3422 1 3577888877544433221111 112222 36777777764 235 899
Q ss_pred EECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC-----CeEEEEEecCCC
Q 014007 286 FNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK-----GTVHVFNLKVNS 336 (432)
Q Consensus 286 wd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 336 (432)
||..+.+-...-...........+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 99887754322111111111222222 66777777643 357788887765
No 343
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.37 E-value=4.3 Score=39.88 Aligned_cols=196 Identities=13% Similarity=0.080 Sum_probs=97.1
Q ss_pred CCCCEEEEEcC-----CcEEEEEcCCCeeEEEe-e-----cccCcceeEEEEeee--CCeEEEecCCCCCCCCCCeEEEE
Q 014007 95 QDHGCFAAGTD-----HGFRIYNCDPFREIFRR-D-----FERGGGIGVVEMLFR--CNILALVGGGPDPQYPLNKVMIW 161 (432)
Q Consensus 95 ~~~~~l~~~~~-----~~i~iw~~~~~~~~~~~-~-----~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~~~~~~v~iw 161 (432)
-++.+++.|+. +.+.+||..+.+-.... . +. ....-.++... .+..++++|.....-....+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p--~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVP--VARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCC--CCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCC--ccccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence 45677777762 23888998766544333 2 11 11112233333 44444444432211112568999
Q ss_pred eCCCCceeE--EeecCCceEEEEEecCccEEEeCC-----eEEEEEcCCCeeeEEEe---e--ccCCcceEEEecCCCcE
Q 014007 162 DDHQSRCIG--ELSFRSEVRSVKLRRDRIIVVLEQ-----KIFVYNFADLKLLHQIE---T--IANPKGLCAVSQGVGSL 229 (432)
Q Consensus 162 d~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~ 229 (432)
|..+.+-.. .+.....-.+++...++.+++..| .+.+||+.+.+-...-. . .......+.+..+.+.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 988764322 222222222333323565555433 69999998765322111 0 11111224444443455
Q ss_pred EEEeecCC------CCcEEEEEccCCc------eeeeec---cCCceeEEEEcCCCCEEEEEcCC--------CceEEEE
Q 014007 230 VLVCPGLQ------KGQVRVEHYASKR------TKFIMA---HDSRIACFALTQDGQLLATSSTK--------GTLVRIF 286 (432)
Q Consensus 230 ~~~~~g~~------d~~i~i~d~~~~~------~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d--------g~~i~vw 286 (432)
++. +|.. ...+.+||+.+.. -..+.. ....-.++....++++++.|+.+ .. |.+|
T Consensus 554 yv~-GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~y 631 (695)
T 2zwa_A 554 IIL-GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISL 631 (695)
T ss_dssp EEE-CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEE
T ss_pred EEE-CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEE
Confidence 554 3421 2458889988866 222222 11111233333347788888743 45 8999
Q ss_pred ECCCCceE
Q 014007 287 NTLDGTLL 294 (432)
Q Consensus 287 d~~~~~~~ 294 (432)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99877544
No 344
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.97 E-value=2.7 Score=36.15 Aligned_cols=190 Identities=12% Similarity=0.059 Sum_probs=93.1
Q ss_pred CCCEEEEEc-C----CcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeE
Q 014007 96 DHGCFAAGT-D----HGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIG 170 (432)
Q Consensus 96 ~~~~l~~~~-~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~ 170 (432)
++.+++.|+ + +.+.+||..+.+-.....+. ....-..+....+..++++|..........+.+||..+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP--TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS--SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC--ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 566777766 2 33888998777654444443 1111122222344455554432112223579999988775332
Q ss_pred E--eecCCceEEEEEecCccEEEe------------CCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecC
Q 014007 171 E--LSFRSEVRSVKLRRDRIIVVL------------EQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGL 236 (432)
Q Consensus 171 ~--~~~~~~v~~~~~~~~~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 236 (432)
. +.....-.++... ++.+++. -..+.+||+.+.+-.. +.....+....+....++.++++ +|.
T Consensus 133 ~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~i~v~-GG~ 209 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCPMIEARKNHGLVFVKDKIFAV-GGQ 209 (306)
T ss_dssp ECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEETTEEEEE-CCE
T ss_pred CCCCcCCcceeEEEEE-CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCCccchhhcceEEEECCEEEEE-eCC
Confidence 2 2212122223333 4444442 2348899988764322 22111111111111123445544 342
Q ss_pred C----CCcEEEEEccCCceeeeecc---CCceeEEEEcCCCCEEEEEcCC-----CceEEEEECCCCce
Q 014007 237 Q----KGQVRVEHYASKRTKFIMAH---DSRIACFALTQDGQLLATSSTK-----GTLVRIFNTLDGTL 293 (432)
Q Consensus 237 ~----d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----g~~i~vwd~~~~~~ 293 (432)
. -..+.+||..+..-..+... .....++.+ ++++++.|+.+ .. +.+||..+.+-
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-~~~yd~~~~~W 275 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGH-ILEYNTETDKW 275 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCE-EEEEETTTTEE
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeee-EEEEcCCCCeE
Confidence 1 24688899887554433211 112223333 67788888754 34 88999877643
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.93 E-value=5.2 Score=39.26 Aligned_cols=178 Identities=8% Similarity=0.049 Sum_probs=88.6
Q ss_pred CeEEEEeCCCCceeEEe--------ecCCceEEEEEec-CccEEEeC---------CeEEEEEcCCCeeeEEEeeccCCc
Q 014007 156 NKVMIWDDHQSRCIGEL--------SFRSEVRSVKLRR-DRIIVVLE---------QKIFVYNFADLKLLHQIETIANPK 217 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~-~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~ 217 (432)
..+.+||..+++-...- .....-.+++... ++.+++.. +.+.+||+.+.+-...-.......
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 57899998877533222 1111223344442 55544421 358899988754322111111111
Q ss_pred ceEEEecCCCcEEEEeecCC-CCcEEEEEccCCceeeeec------cCCceeEEEEcCC-CCEEEEEcC--C-----Cce
Q 014007 218 GLCAVSQGVGSLVLVCPGLQ-KGQVRVEHYASKRTKFIMA------HDSRIACFALTQD-GQLLATSST--K-----GTL 282 (432)
Q Consensus 218 ~~~~~~~~~~~~~~~~~g~~-d~~i~i~d~~~~~~~~~~~------~~~~i~~~~~sp~-~~~l~~~~~--d-----g~~ 282 (432)
...+..-.++.+++. +|.. ++.+.+||..+..-..+.. ....-.++.+..+ +++++.|+. + ..
T Consensus 492 ~h~~~~~~~~~iyv~-GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~- 569 (695)
T 2zwa_A 492 RHSACSLPDGNVLIL-GGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK- 569 (695)
T ss_dssp SCEEEECTTSCEEEE-CCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE-
T ss_pred cceEEEEcCCEEEEE-CCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc-
Confidence 122222124445544 3422 2278999988855433321 1112233555554 677777776 2 34
Q ss_pred EEEEECCCCce-----EEEEEeC--CCcCceEEEEECCCCCEEEEEeC--------CCeEEEEEecCCC
Q 014007 283 VRIFNTLDGTL-----LQEVRRG--ADRAEIYSLAFSSNAQWLAVSSD--------KGTVHVFNLKVNS 336 (432)
Q Consensus 283 i~vwd~~~~~~-----~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~--------dg~i~iwd~~~~~ 336 (432)
+.+||+.+.+. ...+... ....... ++...++++++.|+. ...|.+||+.+.+
T Consensus 570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp EEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred EEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 88999988771 2222211 0111122 223233777777773 3458888887765
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.72 E-value=4.6 Score=37.95 Aligned_cols=187 Identities=10% Similarity=0.047 Sum_probs=108.0
Q ss_pred CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee--cCCceEEEEEe--cCccEEEe----------CCeE---------
Q 014007 140 NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS--FRSEVRSVKLR--RDRIIVVL----------EQKI--------- 196 (432)
Q Consensus 140 ~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~--~~~~~~~~----------d~~i--------- 196 (432)
+|+++...+.. ...|...++...++.+.++ ....+.++++- |+..+++. ||..
T Consensus 141 DGrylfiNdka----n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y 216 (638)
T 3sbq_A 141 DGKYLFINDKA----NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSY 216 (638)
T ss_dssp EEEEEEEEETT----TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEE
T ss_pred eeEEEEEecCC----CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhc
Confidence 56666655432 2788888998888776666 67788888886 56555552 3321
Q ss_pred ---EEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCC------------C----------------------
Q 014007 197 ---FVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQK------------G---------------------- 239 (432)
Q Consensus 197 ---~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------------~---------------------- 239 (432)
...|..+.+...++.. ......+...+++.+.+..|-.++. .
T Consensus 217 ~~f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~ 295 (638)
T 3sbq_A 217 TMYNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL 295 (638)
T ss_dssp EEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC
T ss_pred eEEEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE
Confidence 1122223333222222 1122234555666554433321111 1
Q ss_pred ---cEEEEEccC----C-ceeeeeccCCceeEEEEcCCCCEEEEEcC-CCceEEEEECCC------Cce-------EEEE
Q 014007 240 ---QVRVEHYAS----K-RTKFIMAHDSRIACFALTQDGQLLATSST-KGTLVRIFNTLD------GTL-------LQEV 297 (432)
Q Consensus 240 ---~i~i~d~~~----~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~~i~vwd~~~------~~~-------~~~~ 297 (432)
.|.+.|.+. + ....+..-......+.++|||+++++++. +.+ +.++|++. .+. ....
T Consensus 296 ~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLspt-vtV~d~~k~~~~~~~k~~~~~~~~~ae~ 374 (638)
T 3sbq_A 296 GDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPT-CSMIAIDKLPDLFAGKLADPRDVIVGEP 374 (638)
T ss_dssp TTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred CCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCe-EEEEEeehhhhhhhccccCcccceEeec
Confidence 244444433 1 11122233345678899999999888765 556 99999873 121 2233
Q ss_pred EeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 298 RRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 298 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
. -.......+|.++|....+---|..|.-|++...
T Consensus 375 e---~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 375 E---LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp B---CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred c---CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 3 2246788999999955555568999999999764
No 347
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.67 E-value=3.2 Score=35.97 Aligned_cols=229 Identities=12% Similarity=0.091 Sum_probs=104.2
Q ss_pred EEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCC---CCC--CCCCeEEEEeCCCCceeEE--
Q 014007 99 CFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGP---DPQ--YPLNKVMIWDDHQSRCIGE-- 171 (432)
Q Consensus 99 ~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~---d~~--~~~~~v~iwd~~~~~~~~~-- 171 (432)
+++.|+ ..+.+||..+.+-.. ..+.......-.++....+..++++|.. +.. .....+.+||..+.+-...
T Consensus 18 i~~~GG-~~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVND-TAAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECS-SEEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhccc-cceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 344444 347889987766543 2221011222233444445556665521 100 0012388899877643222
Q ss_pred eecCCceEEEEEecCccEEEe--C-------CeEEEEEcCCCeeeEEEeeccCCcc-eEEEecCCCcEEEEeecCC----
Q 014007 172 LSFRSEVRSVKLRRDRIIVVL--E-------QKIFVYNFADLKLLHQIETIANPKG-LCAVSQGVGSLVLVCPGLQ---- 237 (432)
Q Consensus 172 ~~~~~~v~~~~~~~~~~~~~~--d-------~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~---- 237 (432)
+.....-.+++...+..+++. + ..+.+||+.+.+-... .....+.. ..+... ++.+++. +|..
T Consensus 96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~-~~~iyv~-GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEV-KNLPIKVYGHNVISH-NGMIYCL-GGKTDDKK 172 (318)
T ss_dssp BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEE-CCCSSCEESCEEEEE-TTEEEEE-CCEESSSC
T ss_pred CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeEC-CCCCCcccccEEEEE-CCEEEEE-cCCCCCCC
Confidence 222112223333333333331 1 2588889877643322 11111111 122223 3445443 3421
Q ss_pred -CCcEEEEEccCCceeeeeccCC--ceeEEEEcCCCCEEEEEcCCC-----ceEEEEECCCCceEEEEEeCCCcCceEEE
Q 014007 238 -KGQVRVEHYASKRTKFIMAHDS--RIACFALTQDGQLLATSSTKG-----TLVRIFNTLDGTLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 238 -d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg-----~~i~vwd~~~~~~~~~~~~~~~~~~i~~~ 309 (432)
...+.+||..+..-..+..... .-.+++. -++++++.|+.++ . +.+||+.+.+-...-...........+
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~~~~~p~~r~~~~~~ 250 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSAS-VEAFDLKTNKWEVMTEFPQERSSISLV 250 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEE-EEEEETTTCCEEECCCCSSCCBSCEEE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccce-EEEEECCCCeEEECCCCCCcccceEEE
Confidence 3468899988765443322111 1112222 2677777776543 3 778998876543221111011111222
Q ss_pred EECCCCCEEEEEeCC--------------CeEEEEEecCCC
Q 014007 310 AFSSNAQWLAVSSDK--------------GTVHVFNLKVNS 336 (432)
Q Consensus 310 ~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 336 (432)
. -++++++.|+.+ ..+.+||+.+.+
T Consensus 251 ~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 251 S--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp E--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred E--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2 256777776643 346777776654
No 348
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=92.81 E-value=5.9 Score=36.53 Aligned_cols=108 Identities=12% Similarity=0.052 Sum_probs=61.4
Q ss_pred CCCeEEEEEcCCCCEEEEEcCCc-EEEEEcCCCeeEEEeeccc-----CcceeEEEEeeeC----CeEEEecCCC-----
Q 014007 85 PPTLLHISFNQDHGCFAAGTDHG-FRIYNCDPFREIFRRDFER-----GGGIGVVEMLFRC----NILALVGGGP----- 149 (432)
Q Consensus 85 ~~~v~~~~~s~~~~~l~~~~~~~-i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~~~~~s~~~----- 149 (432)
-.....|+|.|+|+++++-..++ |++++...+.......+.. ........++++| ++.+.++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 44667999999999888877665 7777654444332233321 1346678999998 4554444321
Q ss_pred -CCC-CCCCeEEEEeCCCC-------ceeE-Eee--cCCceEEEEEecCccEEEe
Q 014007 150 -DPQ-YPLNKVMIWDDHQS-------RCIG-ELS--FRSEVRSVKLRRDRIIVVL 192 (432)
Q Consensus 150 -d~~-~~~~~v~iwd~~~~-------~~~~-~~~--~~~~v~~~~~~~~~~~~~~ 192 (432)
+.. -....|..|+...+ +.+. .+. .......|+|.|||.+.++
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 000 00035666665322 1111 122 1245788999999987663
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.23 E-value=14 Score=34.19 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=59.8
Q ss_pred cceEEEecCCC-cEEEEeecCCCCcEEEEEccCCc----eeeee---------ccCCceeEEEEcCC----CCEEEEEcC
Q 014007 217 KGLCAVSQGVG-SLVLVCPGLQKGQVRVEHYASKR----TKFIM---------AHDSRIACFALTQD----GQLLATSST 278 (432)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~~~~~----~~~~~---------~~~~~i~~~~~sp~----~~~l~~~~~ 278 (432)
-..+++.|++. .++++- ..|.|++++.+... +..+. ........|+|+|+ +.+.++-+.
T Consensus 16 P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp EEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred ceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34788999986 455543 67899999754321 11111 11456889999996 444443222
Q ss_pred --C----------CceEEEEECCC----------CceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007 279 --K----------GTLVRIFNTLD----------GTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (432)
Q Consensus 279 --d----------g~~i~vwd~~~----------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 324 (432)
+ .. |.-|.+.. .+.+..+...........|.|.|||.+.++.++.
T Consensus 93 ~~~~~~~~~~~~~~~-v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILR-VVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEE-EEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceE-EEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 13 44465542 1233344322122346899999999877776643
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=88.77 E-value=13 Score=33.27 Aligned_cols=137 Identities=9% Similarity=0.090 Sum_probs=76.5
Q ss_pred eEEEEEcCCC--eeeEEEeeccC------CcceEEEe---cC---CCcEEEEeecCCCCcEEEEEccCCceeeeec----
Q 014007 195 KIFVYNFADL--KLLHQIETIAN------PKGLCAVS---QG---VGSLVLVCPGLQKGQVRVEHYASKRTKFIMA---- 256 (432)
Q Consensus 195 ~i~i~d~~~~--~~~~~~~~~~~------~~~~~~~~---~~---~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~---- 256 (432)
+|.+||+.+. +.++.+..... ....+.+. +. ++..+.++ ....+.|.|+|+.++....+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYIt-D~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYIT-NFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEE-ETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEE-cCCCCcEEEEECCCCcEEEEccCCCc
Confidence 4556666666 66655543211 22344554 11 12232332 2345677788877654333221
Q ss_pred ---------------cCCceeEEEEcCC----CCEEEEEcCCCceEEEEECCC-----C---ceEEEEEeCCCcCceEEE
Q 014007 257 ---------------HDSRIACFALTQD----GQLLATSSTKGTLVRIFNTLD-----G---TLLQEVRRGADRAEIYSL 309 (432)
Q Consensus 257 ---------------~~~~i~~~~~sp~----~~~l~~~~~dg~~i~vwd~~~-----~---~~~~~~~~~~~~~~i~~~ 309 (432)
-...|..|+++|+ ++.|.-....+. ++|.+.+ . ..++.+-.......-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELKQKGGKLNPELLGNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhhCcchhhceEEeeecCCCCCcceE
Confidence 0246888999998 788887777764 5665432 1 222222211111234456
Q ss_pred EEC-CCCCEEEEEeCCCeEEEEEecC
Q 014007 310 AFS-SNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 310 ~~s-~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
++. .+|.++++--..+.|..|+..+
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 775 6787777777889999999875
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.40 E-value=16 Score=32.75 Aligned_cols=59 Identities=7% Similarity=0.068 Sum_probs=30.7
Q ss_pred ceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCCCc---CceEEEEECCC-CCEEEEE
Q 014007 260 RIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADR---AEIYSLAFSSN-AQWLAVS 321 (432)
Q Consensus 260 ~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~---~~i~~~~~s~~-~~~l~~~ 321 (432)
.+.+|.++|+ ...|.++... . |...+ ..++.-..+...... ..+..+.++|. ...|..+
T Consensus 233 ~~~~i~~~~~~~~~l~vg~~~-g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 233 DPHCVVQHPAAPDILYQQNHC-G-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp CEEEEEECSSSTTEEEEEETT-E-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ceeEEEECCCCCCEEEEEcCC-e-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 4889999985 3566666544 4 55554 234433332211111 23567888763 3334443
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.21 E-value=10 Score=38.74 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=31.4
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCC
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSAR 340 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 340 (432)
..+.+++..++..++++-+.|+++|||++.+++++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 3577788888889999999999999999999886544
No 353
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=86.89 E-value=13 Score=35.55 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=42.1
Q ss_pred eeEEEEcCCCCEEEEEcCC------------CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 261 IACFALTQDGQLLATSSTK------------GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 261 i~~~~~sp~~~~l~~~~~d------------g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
.-.|+|+|.|++++.-..+ .. +.+.+..+++..+.+... ....++.++|+||++.|.+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~-~~~~~~~~g~~~rf~~~P-~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccce-EEEEeCCCCeEEEEEeCC-CCccCcCeeECCCCCEEEEE
Confidence 4679999999866654322 23 556666677776656543 56789999999999887665
No 354
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.94 E-value=15 Score=31.17 Aligned_cols=222 Identities=13% Similarity=0.014 Sum_probs=111.4
Q ss_pred CeEEEEEcCCCCEEEEEcCCcEEEEEcCCCeeEEEeecccCcceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC
Q 014007 87 TLLHISFNQDHGCFAAGTDHGFRIYNCDPFREIFRRDFERGGGIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS 166 (432)
Q Consensus 87 ~v~~~~~s~~~~~l~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~ 166 (432)
.|..|+.... ..++.. ++.|..|-.+.....-.. . .....|..++......+++. | |.|+.|-....
T Consensus 25 ~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p-~--~~~~~i~~ia~G~~hs~~l~---~-----G~v~~wG~n~~ 91 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMP-A--ATQSGVDAIAAGNYHSLALK---D-----GEVIAWGGNED 91 (282)
T ss_dssp SCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCC-G--GGGSCCCEEEECSSEEEEEE---T-----TEEEEEECCTT
T ss_pred CCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCC-c--cCCCCEEEEEeCCCEEEEEE---C-----CEEEEeeCCCC
Confidence 4555554433 223333 555777765432221101 1 12335667776666666663 5 89999975542
Q ss_pred ceeEEe-ecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEE
Q 014007 167 RCIGEL-SFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEH 245 (432)
Q Consensus 167 ~~~~~~-~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d 245 (432)
..+..- .....|..++...+..+++.+|.|+.|-......+-.-...... ...++.-..+.+ +. .||.|..|-
T Consensus 92 Gqlg~P~~~~~~v~~ia~G~~hs~al~~G~v~~wG~n~~gqlg~~~~~~~~--i~~i~~G~~~~~-~l---~~G~v~~wG 165 (282)
T 3qhy_B 92 GQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSG--VTALDGGVYTAL-AV---KNGGVIAWG 165 (282)
T ss_dssp STTCCCGGGSSSEEEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGGSS--EEEEEECSSEEE-EE---ETTEEEEEE
T ss_pred CCCCCCcccCCCeEEEECcCCEEEEEeCCeEEEecCCCCCcCCCCccCCCC--eEEEEcccCEEE-EE---ECCEEEEec
Confidence 211111 13457888887777655555999999976542211110011112 233333333333 32 268888886
Q ss_pred ccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCC
Q 014007 246 YAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDK 324 (432)
Q Consensus 246 ~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 324 (432)
... +.+..-......|..|+.-.+ ..++. .||. |+.|=......+. +... ....|..++-.... .++.. |
T Consensus 166 ~n~~gqlg~p~~~~~~v~~i~~G~~-hs~al--~~G~-v~~wG~n~~gqlg-~p~~-~~~~v~~i~~G~~h-~~al~--~ 236 (282)
T 3qhy_B 166 DNYFGQTTVPAEAQSGVDDVAGGIF-HSLAL--KDGK-VIAWGDNRYKQTT-VPTE-ALSGVSAIASGEWY-SLALK--N 236 (282)
T ss_dssp CCTTSTTSCCGGGGSSEEEEEECSS-EEEEE--ETTE-EEEEECCTTSTTC-CCGG-GGSSCCEEEECSSC-EEEEE--T
T ss_pred CCCCCCCCCceecCCCeEEEEecCC-EEEEE--ECCe-EEEEECCCCCCCC-CCcc-cCCCceEEEcCCCE-EEEEE--C
Confidence 554 222111112345777765433 23333 5888 9999654321111 1100 12356777665433 33333 9
Q ss_pred CeEEEEEecCCC
Q 014007 325 GTVHVFNLKVNS 336 (432)
Q Consensus 325 g~i~iwd~~~~~ 336 (432)
|.|+.|-.....
T Consensus 237 g~v~~wG~n~~g 248 (282)
T 3qhy_B 237 GKVIAWGSSRTA 248 (282)
T ss_dssp TEEEEESTTCCC
T ss_pred CEEEEecCCCCc
Confidence 999999765543
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.43 E-value=20 Score=30.43 Aligned_cols=184 Identities=12% Similarity=0.005 Sum_probs=95.8
Q ss_pred eeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEe-ecCCceEEEEEecCccEEEeCCeEEEEEcCCCeeeE
Q 014007 130 IGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGEL-SFRSEVRSVKLRRDRIIVVLEQKIFVYNFADLKLLH 208 (432)
Q Consensus 130 ~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 208 (432)
..|..++......++++ | |.|+.|-......+..- .....|..++......+++.||.|+.|-....-.+-
T Consensus 24 ~~i~~ia~G~~h~~~l~---~-----G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg 95 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK---G-----GKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTT 95 (282)
T ss_dssp SSCCEEEECSSEEEEEE---T-----TEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTC
T ss_pred CCCcEEEeCCCeEEEEE---C-----CEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCC
Confidence 35666666666555554 4 89999975543222111 134467778777666665578999999865421111
Q ss_pred EEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-CceeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEE
Q 014007 209 QIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRTKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFN 287 (432)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd 287 (432)
.-......+ ..++--..+.+ +. . +|.|+.|-... +.+-.-......|..++.-.+- .+.-. ||. |+.|-
T Consensus 96 ~P~~~~~~v--~~ia~G~~hs~-al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~-v~~wG 165 (282)
T 3qhy_B 96 VPAEARSGV--DAIAAGAWASY-AL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGG-VIAWG 165 (282)
T ss_dssp CCGGGSSSE--EEEEEETTEEE-EE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTE-EEEEE
T ss_pred CCcccCCCe--EEEECcCCEEE-EE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCE-EEEec
Confidence 000011122 23333223332 22 3 68888886554 2221111223456666654332 22233 788 99997
Q ss_pred CCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 288 TLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
......+. +... ....|..++...+. .++. .||.|+.|-.....
T Consensus 166 ~n~~gqlg-~p~~-~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~g 209 (282)
T 3qhy_B 166 DNYFGQTT-VPAE-AQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYK 209 (282)
T ss_dssp CCTTSTTS-CCGG-GGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTS
T ss_pred CCCCCCCC-Ccee-cCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCC
Confidence 54321111 1110 12467777765432 3333 59999999776544
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.06 E-value=31 Score=31.74 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=54.1
Q ss_pred eEEEEeeeCCeE--EEecCCCCCCCCCCeEEEEeCCCC---ceeEEee---c-------CCceEEEEEecC----c-cEE
Q 014007 131 GVVEMLFRCNIL--ALVGGGPDPQYPLNKVMIWDDHQS---RCIGELS---F-------RSEVRSVKLRRD----R-IIV 190 (432)
Q Consensus 131 ~v~~~~~~~~~~--~~~s~~~d~~~~~~~v~iwd~~~~---~~~~~~~---~-------~~~v~~~~~~~~----~-~~~ 190 (432)
.-+.|+|.|++. ++++-. . |.|++++.... ..+..+. . ......|+++|+ + .|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er-~-----G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv 88 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEK-E-----GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYV 88 (463)
T ss_dssp SEEEEECCSSSSCCEEEEET-T-----TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEE
T ss_pred CceEEEECCCCCeEEEEEeC-C-----ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEE
Confidence 457889999984 666543 4 89999974322 1222221 1 356789999997 3 333
Q ss_pred E-e---C----------CeEEEEEcCC----------CeeeEEEee--ccCCcceEEEecCCCcEEEEe
Q 014007 191 V-L---E----------QKIFVYNFAD----------LKLLHQIET--IANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 191 ~-~---d----------~~i~i~d~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 233 (432)
+ + + ..|.-|.+.. .+.+..+.. ..+....+.|.||| .+++..
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~ 156 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIIL 156 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEE
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEe
Confidence 3 2 1 1455566542 123333321 12334579999998 566654
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=81.43 E-value=29 Score=30.94 Aligned_cols=206 Identities=8% Similarity=0.053 Sum_probs=117.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEc---C----------C-c--EEEEEcCCC--eeEEEeeccc---CcceeEEEEeee---C
Q 014007 84 PPPTLLHISFNQDHGCFAAGT---D----------H-G--FRIYNCDPF--REIFRRDFER---GGGIGVVEMLFR---C 139 (432)
Q Consensus 84 ~~~~v~~~~~s~~~~~l~~~~---~----------~-~--i~iw~~~~~--~~~~~~~~~~---~~~~~v~~~~~~---~ 139 (432)
+--.|..+...+++++-+.-+ + . . |.+||+.+. +.+....+.. .....+..+.+. +
T Consensus 85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~ 164 (381)
T 3q6k_A 85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANP 164 (381)
T ss_dssp SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCT
T ss_pred ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccC
Confidence 455789999999888655432 1 1 1 889999998 7775555531 123456677666 1
Q ss_pred -----CeEEEecCCCCCCCCCCeEEEEeCCCCceeEEeecCCceEEEEEecCc-cEEEeCCeEEEEEcCCCeeeEEEeec
Q 014007 140 -----NILALVGGGPDPQYPLNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR-IIVVLEQKIFVYNFADLKLLHQIETI 213 (432)
Q Consensus 140 -----~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~ 213 (432)
++.+.++-... ..|.++|+.+++.-+.+. .. +.|+. ..+..+|.-..|
T Consensus 165 ~~~c~~~~aYItD~~~-----~gLIVydl~~~~swRv~~-~~------~~pd~~~~~~i~G~~~~~-------------- 218 (381)
T 3q6k_A 165 KGDCSETFVYITNFLR-----GALFIYDHKKQDSWNVTH-PT------FKAERPTKFDYGGKEYEF-------------- 218 (381)
T ss_dssp TTTSCSEEEEEEETTT-----TEEEEEETTTTEEEEEEC-GG------GSCCSCEEEEETTEEEEE--------------
T ss_pred CCCCCccEEEEEcCCC-----CcEEEEECCCCcEEEEcc-CC------CccccCcceEECCEEeEe--------------
Confidence 45556665555 899999999988766553 21 23431 112234432211
Q ss_pred cCCcceEEEecC----CCcEEEEeecCCCCcEEEEEccC---------CceeeeeccC---CceeEEEEc-CCCCEEEEE
Q 014007 214 ANPKGLCAVSQG----VGSLVLVCPGLQKGQVRVEHYAS---------KRTKFIMAHD---SRIACFALT-QDGQLLATS 276 (432)
Q Consensus 214 ~~~~~~~~~~~~----~~~~~~~~~g~~d~~i~i~d~~~---------~~~~~~~~~~---~~i~~~~~s-p~~~~l~~~ 276 (432)
...+..++++|+ ++.+++.. - ... ++|.+.+ ..++.+ +.. ..-..+++. .+|.++++-
T Consensus 219 ~~Gi~gIaLsp~~~~~~~~LYf~p-l-ss~--~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~ 293 (381)
T 3q6k_A 219 KAGIFGITLGDRDSEGNRPAYYLA-G-SAI--KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAE 293 (381)
T ss_dssp CCCEEEEEECCCCTTSCCEEEEEE-S-SCS--EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEE
T ss_pred ccCceEEEecCCcCCCCeEEEEEE-C-CCC--cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEe
Confidence 234567888887 66666653 1 122 3343332 112222 222 233456675 678777777
Q ss_pred cCCCceEEEEECCC-C---ceEEEEEeCCCcCceEEEEECCCCCEEEEE
Q 014007 277 STKGTLVRIFNTLD-G---TLLQEVRRGADRAEIYSLAFSSNAQWLAVS 321 (432)
Q Consensus 277 ~~dg~~i~vwd~~~-~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 321 (432)
-.... |..|+..+ . +....+.....-..+..+.+..+|.+.+..
T Consensus 294 ~~~~a-I~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 294 ANTKQ-VSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp SSSSE-EEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred ccCCe-EEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 77777 99999765 1 223333322222457778777776655444
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=80.65 E-value=25 Score=29.72 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=49.3
Q ss_pred CCceeEEEEcC-CCCEEEEEcCCCceEEEEECCCCc------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 258 DSRIACFALTQ-DGQLLATSSTKGTLVRIFNTLDGT------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 258 ~~~i~~~~~sp-~~~~l~~~~~dg~~i~vwd~~~~~------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
...|..+.... +..+++..+.+|. |+-..+.... ....++ ....+..+........|+..+..|.++.+
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~-iKr~~l~~~~~~~~G~~~i~lk---egD~l~~~~~~~~~~~ill~T~~G~~~r~ 142 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGY-VKKIPLAEFEYKAQGMPIIKLT---EGDEVVSIASSVDETHILLFTKKGRVARF 142 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSE-EEEEEGGGTTTCSTTEECSCCC---TTCCEEEEEECCSSCEEEEEETTSEEEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCE-EEEEEHHHhhhhcCCeEEEecC---CCCEEEEEEEeCCCCEEEEEECCCEEEEE
Confidence 45566654421 4678999999999 9988875532 111222 23456666666566688888999999988
Q ss_pred EecCCC
Q 014007 331 NLKVNS 336 (432)
Q Consensus 331 d~~~~~ 336 (432)
+...-.
T Consensus 143 ~~~eip 148 (276)
T 3no0_A 143 SVREVP 148 (276)
T ss_dssp EGGGSC
T ss_pred EhhhCC
Confidence 876543
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=76.58 E-value=60 Score=31.83 Aligned_cols=176 Identities=9% Similarity=0.027 Sum_probs=93.1
Q ss_pred CeEEEEeCCCCceeEE-ee--cCC------ceEEEEEecCccEEE-e------------CCeEEEEEcCCCe--eeEEEe
Q 014007 156 NKVMIWDDHQSRCIGE-LS--FRS------EVRSVKLRRDRIIVV-L------------EQKIFVYNFADLK--LLHQIE 211 (432)
Q Consensus 156 ~~v~iwd~~~~~~~~~-~~--~~~------~v~~~~~~~~~~~~~-~------------d~~i~i~d~~~~~--~~~~~~ 211 (432)
..++++|+.+++.+.. +. .+. ....++|..+..+++ . ...|+.|.+-+.. -...+.
T Consensus 156 ~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~ 235 (711)
T 4hvt_A 156 MFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFE 235 (711)
T ss_dssp EEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEE
T ss_pred eEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEec
Confidence 6799999999987632 22 011 113447765444444 2 2468888876632 223344
Q ss_pred eccCCcc-eEEEecCCCc----EEEEee-cCCCCcEEEEEccC--CceeeeeccCCceeEEEEcCCCCEEEEE-------
Q 014007 212 TIANPKG-LCAVSQGVGS----LVLVCP-GLQKGQVRVEHYAS--KRTKFIMAHDSRIACFALTQDGQLLATS------- 276 (432)
Q Consensus 212 ~~~~~~~-~~~~~~~~~~----~~~~~~-g~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~------- 276 (432)
.....+. ....+.+++. +++..+ +.....+.+.+... +....+..... ..+..+.++.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 313 (711)
T 4hvt_A 236 VPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD--ATLQGSFKEYVFWLLRSDWKFK 313 (711)
T ss_dssp CCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT--CEEEEEETTEEEEECSSCEEET
T ss_pred cCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc--ceEeeeECCEEEEEECcccccc
Confidence 3333332 2344566664 233322 22335666666653 33333322221 122344566655532
Q ss_pred ---cCCCceEEEEECCCC-------ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe--EEEEEecCC
Q 014007 277 ---STKGTLVRIFNTLDG-------TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT--VHVFNLKVN 335 (432)
Q Consensus 277 ---~~dg~~i~vwd~~~~-------~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~ 335 (432)
...+. |...|+.++ .....+-.+.....+..+.|..+ .++++...++. |+++|+.++
T Consensus 314 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 314 SHNIKAGS-LVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENE 382 (711)
T ss_dssp TEEECTTC-EEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETT
T ss_pred cccCCCCe-EEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCC
Confidence 13566 888998764 22333232223457888999876 56667767764 667776655
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=75.95 E-value=15 Score=37.57 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=34.1
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
.+.+++..++..++++-+.|++ +|+|++.+++++.+...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIEL 275 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEEEC
T ss_pred eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeeecc
Confidence 4667778888889999999999 99999999999988753
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=74.82 E-value=20 Score=34.85 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=47.1
Q ss_pred CceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEeCCCcCceEEEEECC---C-------CCEEEEEe--CCCe
Q 014007 259 SRIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSS---N-------AQWLAVSS--DKGT 326 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~---~-------~~~l~~~~--~dg~ 326 (432)
..|.++.+ +..+|++-+.|.+ +|+||+++++++.+............ ...| . +.++++-. .+|.
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~-LRiWsL~t~~lv~t~DL~~~~~~~~s-~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~ 297 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCH-LKIWDLTSFTLIQDYDMVSQSDSDPS-HFRKVEAVGEYLSLYNNTLVTLLPLENGL 297 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCE-EEEEETTTTEEEEEEETTTTSCCCSS-CCCCCCSCCCCEEESSSEEEEEETTTTCE
T ss_pred ceEEEecc--CCcEEEEEEcCCe-EEEEEcCCCceEEeeccccCcccccc-ccCcccCcchhHhheeeEEEEEecCCCCe
Confidence 34666655 4679999999999 99999999999988875211100000 0111 1 24555433 5789
Q ss_pred EEEEEecCCC
Q 014007 327 VHVFNLKVNS 336 (432)
Q Consensus 327 i~iwd~~~~~ 336 (432)
.++|.+....
T Consensus 298 Fk~~~l~~~~ 307 (729)
T 3f7f_A 298 FQMGTLLVDS 307 (729)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEEEEcC
Confidence 9999996543
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=73.77 E-value=20 Score=33.86 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=43.3
Q ss_pred CceeEEEEcCCCCEEEEEcC------------CCceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCCEEEEEe
Q 014007 259 SRIACFALTQDGQLLATSST------------KGTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQWLAVSS 322 (432)
Q Consensus 259 ~~i~~~~~sp~~~~l~~~~~------------dg~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 322 (432)
.....|.|+++|.+.+.... ... |..++..++++...+... ....++.++|+||++.|.++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~-v~~~dp~tGel~~fl~~P-~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQ-MLCADPATGEIRRFMVGP-IGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCE-EEEECTTTCCEEEEEECC-TTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCce-EEEEeCCCCeEEEEEeCC-CCccccCCEECCCCCEEEEEE
Confidence 34678999999987773221 124 677777778776655432 336799999999999887763
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=66.02 E-value=1e+02 Score=30.15 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=119.8
Q ss_pred eEEEE-EcCCCCEEEEEc-CCc-----EEEEEcCCCeeEEEeecc-cCcc-----eeEEEEeeeCCeEEEecCCCC----
Q 014007 88 LLHIS-FNQDHGCFAAGT-DHG-----FRIYNCDPFREIFRRDFE-RGGG-----IGVVEMLFRCNILALVGGGPD---- 150 (432)
Q Consensus 88 v~~~~-~s~~~~~l~~~~-~~~-----i~iw~~~~~~~~~~~~~~-~~~~-----~~v~~~~~~~~~~~~~s~~~d---- 150 (432)
...+. ++|++++++.+- ++| ++++|+.+++.+. -.+. .... .....++|..+..++++....
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~-~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK-NGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT-TCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC-CCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34455 899999877653 222 8999998876542 1121 0000 011122444333344432111
Q ss_pred --CCCCCCeEEEEeCCCCc--eeEEee--cCCceEEEEEecCccE-----EEe------CCeEEEEEcCC--CeeeEEEe
Q 014007 151 --PQYPLNKVMIWDDHQSR--CIGELS--FRSEVRSVKLRRDRII-----VVL------EQKIFVYNFAD--LKLLHQIE 211 (432)
Q Consensus 151 --~~~~~~~v~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~-----~~~------d~~i~i~d~~~--~~~~~~~~ 211 (432)
..| +..|+.|.+.+.. -...+. ...--.+...++++.+ ++. ...+++.+... ++ +..+.
T Consensus 210 ~~~~~-~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 287 (711)
T 4hvt_A 210 TSSLY-PNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKIN 287 (711)
T ss_dssp CTTSS-BCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECC
T ss_pred CcCCC-CCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEee
Confidence 111 2679999877653 223343 2222233445566552 332 24567777653 33 22232
Q ss_pred eccCCcceEEEecCCCcEEEEeec--------CCCCcEEEEEccCC--------ceeeeec--cCCceeEEEEcCCCCEE
Q 014007 212 TIANPKGLCAVSQGVGSLVLVCPG--------LQKGQVRVEHYASK--------RTKFIMA--HDSRIACFALTQDGQLL 273 (432)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~g--------~~d~~i~i~d~~~~--------~~~~~~~--~~~~i~~~~~sp~~~~l 273 (432)
.... . .+.... +..+++.... ...+.|.+.|+... ..+.+.. ....+..+.+..+ .++
T Consensus 288 ~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~ 363 (711)
T 4hvt_A 288 MPSD-A-TLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVF 363 (711)
T ss_dssp SCTT-C-EEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEE
T ss_pred cCCc-c-eEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEE
Confidence 2221 1 222333 3344443211 14678999998763 2233222 3446778888876 566
Q ss_pred EEEcCCCc-eEEEEECCCCc-eEEE-EEeCCCcCceEEEEECCCCCE-EEEEe---CCCeEEEEEec
Q 014007 274 ATSSTKGT-LVRIFNTLDGT-LLQE-VRRGADRAEIYSLAFSSNAQW-LAVSS---DKGTVHVFNLK 333 (432)
Q Consensus 274 ~~~~~dg~-~i~vwd~~~~~-~~~~-~~~~~~~~~i~~~~~s~~~~~-l~~~~---~dg~i~iwd~~ 333 (432)
++...++. .|.++|+.+++ .... +... ..+.+....+++++.. +++.+ .-+.+..+|+.
T Consensus 364 ~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 364 LATYDNVVAKVVTFTLENEQWTKPVVLKLP-YQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEETTEEEEEEECEETTEECCCEEECCC-STTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECCEEEEEEEECCCCceEEEeccCCC-CCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 66666663 16777776664 2233 3221 2245666777777654 34333 34678888775
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.48 E-value=9.1 Score=40.08 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=33.0
Q ss_pred ceeEEEEcCCCCEEEEEcCCCceEEEEECCCCceEEEEEe
Q 014007 260 RIACFALTQDGQLLATSSTKGTLVRIFNTLDGTLLQEVRR 299 (432)
Q Consensus 260 ~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~ 299 (432)
.+.+++..++..++++-+.|++ +|+|++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~-LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCE-EEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCE-EEEEECCCCCeEEeech
Confidence 3455666778889999999999 99999999999988764
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.59 E-value=95 Score=26.91 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=62.7
Q ss_pred CCcEEEEeecCCCCcEEEEEccCCc------ee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECC--CC----
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYASKR------TK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTL--DG---- 291 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~~~------~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~--~~---- 291 (432)
...+++++ .+|.++...+..-. .. .+.. ...+..+........|+..+..|. +..+... .-
T Consensus 109 e~~~v~~T---~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~-~~rf~~~~~eip~~g 183 (327)
T 3uc1_A 109 APYLVLAT---RNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQ-SIRFSATDEALRPMG 183 (327)
T ss_dssp SSEEEEEE---TTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSE-EEEEECCTTTSCCCC
T ss_pred CCEEEEEc---CCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCe-EEEEECcccccCcCC
Confidence 44455554 78998888765411 11 1223 334444444445567778888888 7777665 21
Q ss_pred c---eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 292 T---LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 292 ~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+ =+..+... ....|.++...+++.+|+..+..|.++.-.+....
T Consensus 184 r~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~ 230 (327)
T 3uc1_A 184 RATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYP 230 (327)
T ss_dssp TTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSC
T ss_pred cCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHcc
Confidence 1 01111111 23567777666667789999999999988877654
No 366
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=56.98 E-value=22 Score=22.18 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCCEEEEEecCCeEEEEEecCCCCCcceEee
Q 014007 391 QKNTVVILGMDGSFYRCQFDPVNGGEMTQLE 421 (432)
Q Consensus 391 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~ 421 (432)
..+.++... ||.|+||.+|+.+++ +.+++
T Consensus 28 e~nhFgv~e-~g~iKIykyde~tNe-I~LkK 56 (72)
T 3kvp_A 28 EHNHFGVME-DGYIKIYEYNESRNE-VKLKK 56 (72)
T ss_dssp STTEEEEEE-TTEEEEEEEETTTTE-EEEEE
T ss_pred cCCEEEEEe-CCEEEEEEeCCCCCe-EEEEE
Confidence 556777777 999999999998764 43333
No 367
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=53.82 E-value=1.2e+02 Score=26.90 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=79.5
Q ss_pred ceEEEEEecCccEEE-eCCeEEEEEcCCC-e----------eeEEEeec-cCCcceEEEecCCCcEEEEeecCCCCcEEE
Q 014007 177 EVRSVKLRRDRIIVV-LEQKIFVYNFADL-K----------LLHQIETI-ANPKGLCAVSQGVGSLVLVCPGLQKGQVRV 243 (432)
Q Consensus 177 ~v~~~~~~~~~~~~~-~d~~i~i~d~~~~-~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 243 (432)
.+..++......+++ .||.|+.|-.... + ....+... ...+..++++.-..+.+++. .+|.|+.
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~---~~G~v~~ 130 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS---SEGEVYS 130 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEE---TTSCEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEc---CCCCEEE
Confidence 455565544444444 4899999964431 1 11111111 11233355655555554443 6899999
Q ss_pred EEccC-Cc-----------eeeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCC-Cc--------eEE-EEEeC
Q 014007 244 EHYAS-KR-----------TKFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLD-GT--------LLQ-EVRRG 300 (432)
Q Consensus 244 ~d~~~-~~-----------~~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~-~~--------~~~-~~~~~ 300 (432)
|-... +. ...+.. ....|..|+. ...+.+.-..+|. |+.|-... ++ ... .....
T Consensus 131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~--G~~hs~alt~~G~-v~~wG~n~~GqLG~~~~~~~~~p~~v~~ 207 (389)
T 3kci_A 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAA--GGAHSACVTAAGD-LYTWGKGRYGRLGHSDSEDQLKPKLVEA 207 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE--CSSEEEEEETTSC-EEEEECCGGGTTCSSSCCCEEEEEECGG
T ss_pred EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEe--CcCeEEEEeCCCe-EEEeCCCCCCCcCCCCCcccccceEecc
Confidence 96543 11 111111 1224555554 3445566677888 99996432 11 111 11111
Q ss_pred CCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 301 ADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 301 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
.....|..++......+.+.-..||.|+.|-.....
T Consensus 208 ~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp GTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred cCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 112357777765433556666789999999776543
No 368
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=51.23 E-value=50 Score=31.99 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=38.4
Q ss_pred EEEEEcCCCceEEEEECCCCc-------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 272 LLATSSTKGTLVRIFNTLDGT-------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 272 ~l~~~~~dg~~i~vwd~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
.+..|+.+|.++++.-..... .+.++.......+|..|.++++.++|.+++.++.++|
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 567788999844554433221 3334444334578999999999999999998775544
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=49.53 E-value=63 Score=30.82 Aligned_cols=18 Identities=11% Similarity=0.128 Sum_probs=15.8
Q ss_pred CCceEEEEccCCCEEEEE
Q 014007 381 GSPYIVAFGHQKNTVVIL 398 (432)
Q Consensus 381 ~~v~~~~~s~~~~~l~~~ 398 (432)
..++.++|+||++.|++.
T Consensus 531 aE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 531 CEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEEECTTSSEEEEE
T ss_pred ccCcCeeECCCCCEEEEE
Confidence 579999999999998875
No 370
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=47.99 E-value=1.5e+02 Score=26.48 Aligned_cols=188 Identities=9% Similarity=0.070 Sum_probs=95.5
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC-c------------eeEEeecCCceEEEEEecCccEEE-eCCeE
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS-R------------CIGELSFRSEVRSVKLRRDRIIVV-LEQKI 196 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~-~------------~~~~~~~~~~v~~~~~~~~~~~~~-~d~~i 196 (432)
.|..++......++++.+ |.|+.|-.... + .-..+.....|..++......+++ .||.|
T Consensus 76 ~v~~va~G~~h~~~l~~~-------G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v 148 (423)
T 3mvd_K 76 DAVDISAGGMHNLVLTKS-------GDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRV 148 (423)
T ss_dssp SEEEEEECSSEEEEEETT-------SCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CceEEeeCCCeEEEEeCC-------CeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeE
Confidence 466776666666666554 88999964321 1 001112345677777666555555 38999
Q ss_pred EEEEc--CC-Ceee--------EEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cce-------------
Q 014007 197 FVYNF--AD-LKLL--------HQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT------------- 251 (432)
Q Consensus 197 ~i~d~--~~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~------------- 251 (432)
+.|-. .. +++- ..... ......+.++.-..+.+++. .+|.|+.|-... +.+
T Consensus 149 ~~wG~~~n~~GqlG~~~~~~~~~p~~~-~~~~~i~~va~G~~hs~alt---~~G~v~~wG~n~~GqLG~~~~~~~~~~~~ 224 (423)
T 3mvd_K 149 FAWGSFRDSHGNMGLTIDGNKRTPIDL-MEGTVCCSIASGADHLVILT---TAGKVFTVGCAEQGQLGRLSERSISGEGR 224 (423)
T ss_dssp EEEECEECSSSEEESBTTBCEEEEEES-STTCCEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTSSCCTTTTTSCST
T ss_pred EEEeCCCCCCCCcCcCCCCCCceeeEe-cCCCcEEEEecCCCeEEEEe---cCCeEEEeeCCcCCccCCCcccccccccc
Confidence 99985 22 2211 11111 11223344444444444443 689999996433 110
Q ss_pred ---------eee-eccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-----------ceEEEEEeCCCcCceEEEE
Q 014007 252 ---------KFI-MAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-----------TLLQEVRRGADRAEIYSLA 310 (432)
Q Consensus 252 ---------~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-----------~~~~~~~~~~~~~~i~~~~ 310 (432)
..+ ......|..++.. ....++.-..++. |+.|-.... ......... ...|..|+
T Consensus 225 ~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~~g~-v~~wG~n~~gqlg~~~~~~~~~~~p~~~~--~~~v~~ia 300 (423)
T 3mvd_K 225 RGKRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQTQV-IWATGLNNFKQLAHETKGKEFALTPIKTE--LKDIRHIA 300 (423)
T ss_dssp TTTTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETTTCC-EEEEEECTTCTTSSCCTTCSEEEEEEEEC--CCSEEEEE
T ss_pred cccccccCCeEEeecCCccEEEEEEC-CcEEEEEECCCCe-EEEEeCCCCCcCCCCCCCCceeeeeEEcC--CCCeEEEE
Confidence 111 1112344555443 2223333367888 888864321 111111111 24566666
Q ss_pred ECCCCCEEEEEeCCCeEEEEEecCC
Q 014007 311 FSSNAQWLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 311 ~s~~~~~l~~~~~dg~i~iwd~~~~ 335 (432)
-. ..+.+.-..||.|+.|-....
T Consensus 301 ~G--~~ht~alt~~G~v~~wG~n~~ 323 (423)
T 3mvd_K 301 GG--QHHTVILTTDLKCSVVGRPEY 323 (423)
T ss_dssp EC--SSEEEEEETTCCEEEEECCGG
T ss_pred cc--cCeEEEEeCCCcEEEEECCCC
Confidence 53 344555567999999976543
No 371
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=47.89 E-value=61 Score=30.69 Aligned_cols=57 Identities=5% Similarity=-0.032 Sum_probs=40.9
Q ss_pred ceEEEEEecCccEEE-eCC--------------eEEEEEcCCCeeeEEEeec-cCCcceEEEecCCCcEEEEe
Q 014007 177 EVRSVKLRRDRIIVV-LEQ--------------KIFVYNFADLKLLHQIETI-ANPKGLCAVSQGVGSLVLVC 233 (432)
Q Consensus 177 ~v~~~~~~~~~~~~~-~d~--------------~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 233 (432)
....|.|.++|.+.+ +|+ .|..++..+++....+... ....+.++|+||++.++++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356789999988777 554 5777777677765555432 23467899999999988776
No 372
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=45.45 E-value=1.4e+02 Score=25.12 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=62.3
Q ss_pred CCcEEEEeecCCCCcEEEEEccCCc-----ee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-------
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYASKR-----TK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------- 291 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~~~-----~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------- 291 (432)
...+++++ .+|.++...+..-. .. .+. ....+..+........|+..+.+|. +..+....-
T Consensus 80 ~~~~v~~T---~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~-~~r~~~~eip~~gR~a 154 (276)
T 3no0_A 80 GNRLLLAT---KKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGR-VARFSVREVPPSTPGA 154 (276)
T ss_dssp CSEEEEEE---TTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSE-EEEEEGGGSCBCCTTC
T ss_pred CCEEEEEe---CCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCE-EEEEEhhhCCCcCCCC
Confidence 34445544 78888888765421 11 122 2344555555555567888888888 777765321
Q ss_pred ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 292 TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 292 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+=+..+... ....|..+....++..++..+..|.++...+....
T Consensus 155 ~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 155 RGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIP 198 (276)
T ss_dssp CCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSC
T ss_pred CCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcc
Confidence 111112111 23456666555667788899999999999887654
No 373
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.90 E-value=1.8e+02 Score=28.91 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=37.9
Q ss_pred CCceeEEEEcCC-CCEEEEEcCCCceEEEEECCCCceEEEEEeCC-----CcCceEEEEECCCC-CEEEEE
Q 014007 258 DSRIACFALTQD-GQLLATSSTKGTLVRIFNTLDGTLLQEVRRGA-----DRAEIYSLAFSSNA-QWLAVS 321 (432)
Q Consensus 258 ~~~i~~~~~sp~-~~~l~~~~~dg~~i~vwd~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~-~~l~~~ 321 (432)
...|.+|+++|. ...++++...+. |...+ ..|+.-..+.... ....+.+|+++|.. ..++.+
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~gg-v~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~ 82 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGG-AYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLA 82 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSC-EEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCC-EEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEE
Confidence 468999999985 456677777777 76665 3454433332211 12369999999843 344444
No 374
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=43.69 E-value=48 Score=30.79 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=42.9
Q ss_pred ceeEEEEcC----CC--CEEEEEcCCCceEEEEECCCCc-------eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCe
Q 014007 260 RIACFALTQ----DG--QLLATSSTKGTLVRIFNTLDGT-------LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGT 326 (432)
Q Consensus 260 ~i~~~~~sp----~~--~~l~~~~~dg~~i~vwd~~~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 326 (432)
..++|+... ++ ..+..|+.+|.+.++.-...+. .+.++.......+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 346665543 23 3467788999844444332221 2334443223468999999999999999998876
Q ss_pred EEE
Q 014007 327 VHV 329 (432)
Q Consensus 327 i~i 329 (432)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.29 E-value=1.1e+02 Score=32.08 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=28.8
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCCceeEEee
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQSRCIGELS 173 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~~~~~~~~ 173 (432)
.+.+++..++..++++-+.| +++|+|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D-----~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLD-----YKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTT-----CEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCC-----CEEEEEECCCCCeEEeec
Confidence 34455555666677777777 999999999999988765
No 376
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=36.16 E-value=1.1e+02 Score=21.41 Aligned_cols=26 Identities=8% Similarity=0.072 Sum_probs=15.5
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecC
Q 014007 307 YSLAFSSNAQWLAVSSDKGTVHVFNLKV 334 (432)
Q Consensus 307 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 334 (432)
..+.+..+|.+++... ++.+ +|.-.+
T Consensus 59 ~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 59 CFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp CEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred EEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 4567777787766532 4443 676554
No 377
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=34.74 E-value=2.5e+02 Score=25.01 Aligned_cols=192 Identities=9% Similarity=0.076 Sum_probs=97.3
Q ss_pred ceeEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC------c--ee---EEee--cCCceEEEEEecCccEEE-eCC
Q 014007 129 GIGVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS------R--CI---GELS--FRSEVRSVKLRRDRIIVV-LEQ 194 (432)
Q Consensus 129 ~~~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~------~--~~---~~~~--~~~~v~~~~~~~~~~~~~-~d~ 194 (432)
...|..++...+..++++.+. +.|+.|-.... . .. ..+. ....|..++......+++ .+|
T Consensus 67 ~~~i~~va~G~~ht~al~~~g------g~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G 140 (406)
T 4d9s_A 67 GHQIVSVTCGADHTVAYSQSG------MEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEG 140 (406)
T ss_dssp TSCEEEEEECSSEEEEEETTT------TEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTS
T ss_pred CCCEEEEEeCcceEEEEECCC------CEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCC
Confidence 346777776666665555431 58999964321 1 01 1111 233677777765555544 389
Q ss_pred eEEEEEcCCC-ee----------eEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cce-----------
Q 014007 195 KIFVYNFADL-KL----------LHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KRT----------- 251 (432)
Q Consensus 195 ~i~i~d~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~~----------- 251 (432)
.|+.|-.... ++ ...+.. ........++....+.++++ .+|.|+.|-... +.+
T Consensus 141 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~hs~alt---~~G~v~~wG~n~~GqlG~g~~~~~~~p 216 (406)
T 4d9s_A 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQA-FEGIRIKMVAAGAEHTAAVT---EDGDLYGWGWGRYGNLGLGDRTDRLVP 216 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGG-GTTCCEEEEEECSSEEEEEE---TTSCEEEEECCTTSTTCSSSSCCEEEE
T ss_pred cEEEeCCCCCccCCCCCCCCcccceEecc-cCCCcEEEEecCCCeEEEEe---CCCCEEEeeCCCCCCCCCCCCCCcCcc
Confidence 9999975431 11 111111 11223344444444444443 689999996543 110
Q ss_pred eeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-c--------e--EEEEEeCCCcCceEEEEECCCCCEEE
Q 014007 252 KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-T--------L--LQEVRRGADRAEIYSLAFSSNAQWLA 319 (432)
Q Consensus 252 ~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~--------~--~~~~~~~~~~~~i~~~~~s~~~~~l~ 319 (432)
..+.. ....|..++. ...+.+.-..+|. |+.|-.... + . ...+.. .....|..++-. ..+.+
T Consensus 217 ~~v~~~~~~~i~~va~--G~~ht~~l~~~G~-v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~v~~i~~G--~~hs~ 290 (406)
T 4d9s_A 217 ERVTSTGGEKMSMVAC--GWRHTISVSYSGA-LYTYGWSKYGQLGHGDLEDHLIPHKLEA-LSNSFISQISGG--WRHTM 290 (406)
T ss_dssp EECCCSTTCCEEEEEE--CSSEEEEEETTCC-EEEEECCTTSTTCSSSCCCEEEEEECGG-GTTSCEEEEEEC--SSEEE
T ss_pred EEecccCCceEEEEEE--CCCcEEEEcCCCC-EEEeeCCCCCCCCCCCCcCccccEEecc-cCCCCEEEEEec--CCEEE
Confidence 11111 1234555554 3344555667888 888864321 1 1 111111 112346666653 34445
Q ss_pred EEeCCCeEEEEEecCCC
Q 014007 320 VSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 320 ~~~~dg~i~iwd~~~~~ 336 (432)
.-..||.|+.|-....-
T Consensus 291 alt~~G~v~~wG~n~~G 307 (406)
T 4d9s_A 291 ALTSDGKLYGWGWNKFG 307 (406)
T ss_dssp EEETTSCEEEEECCTTS
T ss_pred EEcCCCeEEEeeCCCCC
Confidence 55689999999876544
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=34.45 E-value=1.9e+02 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCEEEEE-cCCcEEEEEcCCCeeEEEeec
Q 014007 86 PTLLHISFNQDHGCFAAG-TDHGFRIYNCDPFREIFRRDF 124 (432)
Q Consensus 86 ~~v~~~~~s~~~~~l~~~-~~~~i~iw~~~~~~~~~~~~~ 124 (432)
..|.++.+. ..+|++- -|+.+|+|++.+++......+
T Consensus 222 ~~Is~~~~~--~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEET--TTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEeccC--CcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 457766664 4565554 488899999999988766666
No 379
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=32.43 E-value=1.2e+02 Score=28.52 Aligned_cols=69 Identities=20% Similarity=0.210 Sum_probs=42.1
Q ss_pred ceeEEEEcCC--CCEEEEEcCCCceEEEEECCCC----ceEEEEEeCCCcCceE-EEEECCCCCEEEEEeCCCeEEE
Q 014007 260 RIACFALTQD--GQLLATSSTKGTLVRIFNTLDG----TLLQEVRRGADRAEIY-SLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 260 ~i~~~~~sp~--~~~l~~~~~dg~~i~vwd~~~~----~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~i~i 329 (432)
..++|+.... -..+..|+.+|. |.-..+... ..+..+.......+|. .|.+++++.+|++++.++.++|
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~-l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGK-LKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSE-EEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCe-EEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 3555555442 345777889998 443334322 2344444332245775 8999999999999987765444
No 380
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=31.73 E-value=2.7e+02 Score=24.54 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=94.7
Q ss_pred eEEEEeeeCCeEEEecCCCCCCCCCCeEEEEeCCCC--------ceeE---Eee--cCCceEEEEEecCccEE-E--eCC
Q 014007 131 GVVEMLFRCNILALVGGGPDPQYPLNKVMIWDDHQS--------RCIG---ELS--FRSEVRSVKLRRDRIIV-V--LEQ 194 (432)
Q Consensus 131 ~v~~~~~~~~~~~~~s~~~d~~~~~~~v~iwd~~~~--------~~~~---~~~--~~~~v~~~~~~~~~~~~-~--~d~ 194 (432)
.+..++......++++.+ |.|+.|-.... .... .+. ....+..++++...... + .||
T Consensus 54 ~i~~i~~G~~~~~~l~~~-------G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G 126 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTAD-------GKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEG 126 (389)
T ss_dssp CEEEEEEETTEEEEEETT-------SCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTS
T ss_pred ceEEEEeCCCeEEEEcCC-------CcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCC
Confidence 456666555555555544 88999964321 1111 111 22334445555433222 2 389
Q ss_pred eEEEEEcCCC-e----------eeEEEeeccCCcceEEEecCCCcEEEEeecCCCCcEEEEEccC-Cc-----------e
Q 014007 195 KIFVYNFADL-K----------LLHQIETIANPKGLCAVSQGVGSLVLVCPGLQKGQVRVEHYAS-KR-----------T 251 (432)
Q Consensus 195 ~i~i~d~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~-~~-----------~ 251 (432)
.|+.|-.... + ....+.. ......+.++--..+.+++. .+|.|+.|-... +. .
T Consensus 127 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i~~va~G~~hs~alt---~~G~v~~wG~n~~GqLG~~~~~~~~~p 202 (389)
T 3kci_A 127 EVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEVVDVAAGGAHSACVT---AAGDLYTWGKGRYGRLGHSDSEDQLKP 202 (389)
T ss_dssp CEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCEEEEEECSSEEEEEE---TTSCEEEEECCGGGTTCSSSCCCEEEE
T ss_pred CEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeEEEEEeCcCeEEEEe---CCCeEEEeCCCCCCCcCCCCCcccccc
Confidence 9999964321 1 1111111 11223444544444444443 689999996543 11 1
Q ss_pred eeeec-cCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-c----------eEEEEEeCCCcCceEEEEECCCCCEEE
Q 014007 252 KFIMA-HDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG-T----------LLQEVRRGADRAEIYSLAFSSNAQWLA 319 (432)
Q Consensus 252 ~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~-~----------~~~~~~~~~~~~~i~~~~~s~~~~~l~ 319 (432)
..+.. ....|..++......+.+.-..||. |+.|-.... + ....+.. .....|..++... .+.+
T Consensus 203 ~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~-v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~~~~~v~~v~~G~--~hs~ 278 (389)
T 3kci_A 203 KLVEALQGHRVVDIACGSGDAQTLCLTDDDT-VWSWGDGDYGKLGRGGSDGCKVPMKIDS-LTGLGVVKVECGS--QFSV 278 (389)
T ss_dssp EECGGGTTSCEEEEEECCSSCEEEEEETTTE-EEEEECCGGGTTSSSSCCCEEEEEECGG-GTTSCEEEEEEET--TEEE
T ss_pred eEecccCCCeEEEEEEcCCCcEEEEEccCCE-EEEEeCCCCCCCCCCCCCCccccEEecc-cCCCcEEEEeCCC--CEEE
Confidence 11111 2234666665433345666678888 999964321 1 1111111 1112466666533 3444
Q ss_pred EEeCCCeEEEEEecCCC
Q 014007 320 VSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 320 ~~~~dg~i~iwd~~~~~ 336 (432)
.-..+|.|+.|-.....
T Consensus 279 alt~~G~v~~wG~n~~G 295 (389)
T 3kci_A 279 ALTKSGAVYTWGKGDYH 295 (389)
T ss_dssp EEETTSCEEEEECCGGG
T ss_pred EEeCCCeEEEEeCCCCC
Confidence 55689999999876543
No 381
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=31.40 E-value=3.4e+02 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=38.0
Q ss_pred EEEEECCCCceEEEEEeCCCc---CceEEEE-ECC--CC--CEEEEEeCCCeEEEEEecCCC
Q 014007 283 VRIFNTLDGTLLQEVRRGADR---AEIYSLA-FSS--NA--QWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 283 i~vwd~~~~~~~~~~~~~~~~---~~i~~~~-~s~--~~--~~l~~~~~dg~i~iwd~~~~~ 336 (432)
|+|.|+.+|.++.++...... ..+..+. +.. || .++..|...|.|.-+|+....
T Consensus 225 Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~ 286 (570)
T 3hx6_A 225 LLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGK 286 (570)
T ss_dssp EEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSS
T ss_pred EEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCC
Confidence 999999999999988753211 2233333 223 33 478899999999999997755
No 382
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=30.09 E-value=2.6e+02 Score=23.86 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCceEEEEECCCCce-----EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCC
Q 014007 269 DGQLLATSSTKGTLVRIFNTLDGTL-----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEP 343 (432)
Q Consensus 269 ~~~~l~~~~~dg~~i~vwd~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 343 (432)
+..+|+..+.+|. ++...+..... +..+... ....+..+....+...++..+.+|.+..+.+..-.......
T Consensus 113 ~~~~ll~~T~~G~-~kr~~l~~~~~~r~~G~~~i~L~-~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~- 189 (312)
T 1suu_A 113 DDAYLLLTTASGK-IARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT- 189 (312)
T ss_dssp TTCEEEEEETTSE-EEEEEGGGGCC----CEECBCCC-TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB-
T ss_pred CCCEEEEEeCCCe-EEEEEHHHhhccCCCcEEEEecC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC-
Confidence 4567888899998 88887743211 1112211 23456666555556678888899999999887643211100
Q ss_pred CCCCCCCCCCCCceeEeecccceeecceeeEEEEe-cCCCceEEEEccCCCEEEEEecCCeEEEEEecC
Q 014007 344 RSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRL-VEGSPYIVAFGHQKNTVVILGMDGSFYRCQFDP 411 (432)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~~~~ 411 (432)
.. ...++. ..+.|..+..-.++..|++.+..|......++.
T Consensus 190 -------------------------~G--v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 190 -------------------------QG--VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp -------------------------CC--EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred -------------------------CC--eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 00 000111 123444444444566788899999988877744
No 383
>4a54_B DCP2, mRNA decapping complex subunit 2; RNA binding protein-hydrolase complex; NMR {Schizosaccharomyces pombe}
Probab=28.92 E-value=49 Score=18.20 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=9.9
Q ss_pred cccccCCCCCCCCCCCC
Q 014007 3 ALSAYSSPWPEPTPDPN 19 (432)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (432)
|.|..+.|+|...|.|+
T Consensus 30 apsdlatpqpstfpqpp 46 (52)
T 4a54_B 30 APSDLATPQPSTFPQPP 46 (52)
T ss_dssp CSCSSSCCCCCCCCCCS
T ss_pred CcccccCCCCCCCCCCC
Confidence 45566666666655444
No 384
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=28.82 E-value=2.8e+02 Score=23.88 Aligned_cols=123 Identities=18% Similarity=0.199 Sum_probs=70.1
Q ss_pred CceeEE-EEcC--CCCEEEEEcCCCceEEEEECCCCce-----EEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEE
Q 014007 259 SRIACF-ALTQ--DGQLLATSSTKGTLVRIFNTLDGTL-----LQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVF 330 (432)
Q Consensus 259 ~~i~~~-~~sp--~~~~l~~~~~dg~~i~vwd~~~~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iw 330 (432)
..|.++ .+.. +..+++..+.+|. |+--.+..... +..+... ....+..+........|+..+..|.+..+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~-iKr~~l~~~~~~~r~G~~~i~lk-e~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGL-VKKSKLTDFDSNRSGGIVAVNLR-DNDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSE-EEEEEGGGGCCCCSSCEESCBCC-TTCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCE-EEEeEHHHhhccccCceEEEEEC-CCCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345444 3332 5778999999999 99887654221 1112211 23455555555556678888899999988
Q ss_pred Eec--CCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCceEEEEccCCCEEEEEecCCeEEEEE
Q 014007 331 NLK--VNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSPYIVAFGHQKNTVVILGMDGSFYRCQ 408 (432)
Q Consensus 331 d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~iw~ 408 (432)
.+. .-...... .. +.. ...+. ..+.|.++...+++..|+.++..|.++.-.
T Consensus 173 ~~~~~eip~~gr~-------------a~----Gv~---------~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 173 SATDEALRPMGRA-------------TS----GVQ---------GMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp ECCTTTSCCCCTT-------------SB----CEE---------SSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred ECcccccCcCCcC-------------CC----Cee---------eecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 887 32211100 00 000 00011 223455555555567888999999988866
Q ss_pred ec
Q 014007 409 FD 410 (432)
Q Consensus 409 ~~ 410 (432)
++
T Consensus 226 l~ 227 (327)
T 3uc1_A 226 IE 227 (327)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.54 E-value=2.5e+02 Score=23.16 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=45.7
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCceeEeecccceeecceeeEEEEecCCCc
Q 014007 304 AEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNSGSARSEPRSTSDPTLPTSSLSFIKGVLPKYFSSEWSVAQFRLVEGSP 383 (432)
Q Consensus 304 ~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 383 (432)
..|.++....++.+|+.++..|.++...+........- ......++. .+.+
T Consensus 84 e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~----------------------------G~~~i~L~~-~d~l 134 (256)
T 1zvt_A 84 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA----------------------------GKALITLPE-NAHV 134 (256)
T ss_dssp CCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTT----------------------------CEECBCCCT-TCCB
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcC----------------------------ceEEEEECC-CCEE
Confidence 45666654345677888999999999988765321100 000001111 1233
Q ss_pred eEEEEc-cCCCEEEEEecCCeEEEEEec
Q 014007 384 YIVAFG-HQKNTVVILGMDGSFYRCQFD 410 (432)
Q Consensus 384 ~~~~~s-~~~~~l~~~~~dg~v~iw~~~ 410 (432)
-.+... .++..|+..+.+|.+..+..+
T Consensus 135 v~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 135 MPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp CCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred EEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 334344 345678888999988887764
No 386
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.69 E-value=2.3e+02 Score=26.98 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=37.0
Q ss_pred CEEEEEcCCCceEEEEECCCC----c-eEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEE
Q 014007 271 QLLATSSTKGTLVRIFNTLDG----T-LLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHV 329 (432)
Q Consensus 271 ~~l~~~~~dg~~i~vwd~~~~----~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 329 (432)
..+..|+.+|.+.++.....+ . .+.++.......+|..|.++++...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 356778889983344433322 1 1223322123467999999999999999887765554
No 387
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=24.60 E-value=2.8e+02 Score=26.81 Aligned_cols=69 Identities=19% Similarity=0.329 Sum_probs=43.9
Q ss_pred eeEEEEc----CCCC---EEEEEcCCCceEEEEECCCCc-eEEEEEeCCCcCceEEEEECCCC--CEEEEEeCCCeEEE
Q 014007 261 IACFALT----QDGQ---LLATSSTKGTLVRIFNTLDGT-LLQEVRRGADRAEIYSLAFSSNA--QWLAVSSDKGTVHV 329 (432)
Q Consensus 261 i~~~~~s----p~~~---~l~~~~~dg~~i~vwd~~~~~-~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i 329 (432)
.+.|+.. .+++ .++.|+.+|.++++-...... .+.++..-....+|..|.++++. .+|++++.++.++|
T Consensus 399 ~T~iaVd~v~~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 399 YTQIVVDRTQALDGTVYDVMFVSTDRGALHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEETTSEEEEEEECSSSEEEEEEEECCTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred eEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCceEEEEecccCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 4566653 3443 677889999844554544432 33333332234688899999988 89999988776554
No 388
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.10 E-value=4.8e+02 Score=24.65 Aligned_cols=150 Identities=13% Similarity=0.158 Sum_probs=86.7
Q ss_pred eEEEEeCCCCceeEEeec---CCce---------------EEEEEecCc---cEEEe-----CCeEEEEEcCCCeeeEEE
Q 014007 157 KVMIWDDHQSRCIGELSF---RSEV---------------RSVKLRRDR---IIVVL-----EQKIFVYNFADLKLLHQI 210 (432)
Q Consensus 157 ~v~iwd~~~~~~~~~~~~---~~~v---------------~~~~~~~~~---~~~~~-----d~~i~i~d~~~~~~~~~~ 210 (432)
.+.++|=.+|+.+.++.. .+.+ .++++. || .+++. ...|..||.+.+++...+
T Consensus 230 yL~vfdG~TG~~l~~~~~~p~rg~~~~WGD~ygnR~drf~~~vayL-DG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W 308 (591)
T 2zux_A 230 YLTVFQGSTGKELVTANFEPARGNVSDWGDSYGNRVDRFLAGIAYL-DGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLW 308 (591)
T ss_dssp EEEEEETTTCCEEEEEECSSCCCCGGGGTCSSSSGGGCEEEEEECT-TSSSCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred EEEEEeCCCCCEEecccCCCCCCcccccccccccccccceeeEEEC-CCCCceEEEeccccceeEEEEEECCCCceEEEE
Confidence 588999889988877662 2222 222221 22 12222 235888998887664444
Q ss_pred eecc-------------CCcceEEEecCCCcEEEEeec--CCCCcEEEEEccCCceeeeeccCCceeEEEEcCC--CCEE
Q 014007 211 ETIA-------------NPKGLCAVSQGVGSLVLVCPG--LQKGQVRVEHYASKRTKFIMAHDSRIACFALTQD--GQLL 273 (432)
Q Consensus 211 ~~~~-------------~~~~~~~~~~~~~~~~~~~~g--~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~sp~--~~~l 273 (432)
.... +......+.-||..-++..+. ..||++ +|... .+|...+....|.|+ |..+
T Consensus 309 ~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~~iD~dG~~-L~st~-------~gHGDa~hv~dldP~r~GlEv 380 (591)
T 2zux_A 309 TLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSMAVDHDGKG-MYSTG-------LGHGDALHTGDLDPGRPGLEV 380 (591)
T ss_dssp EEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTEEECTTSCE-EEECS-------CCCCSCEEEECCCTTSSSCEE
T ss_pred EecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeeeEECCCCCE-eeeCC-------CCCCCeeEEeecCCCCCCcEE
Confidence 3222 233344556666655443100 123333 33321 378888888999987 4466
Q ss_pred EEEcCC----CceEEEEECCCCceEEEEEeCCCcCceEEEEECCCCC
Q 014007 274 ATSSTK----GTLVRIFNTLDGTLLQEVRRGADRAEIYSLAFSSNAQ 316 (432)
Q Consensus 274 ~~~~~d----g~~i~vwd~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 316 (432)
+.+.++ .. ..+.|.++|+.+.......+.+......|.|+..
T Consensus 381 ~~~~E~~~~~~G-~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~p 426 (591)
T 2zux_A 381 FQVHEDKNAKYG-LSFRDAATGKILWGVYAGKDVGRGMAADIDPRYP 426 (591)
T ss_dssp EEECCCTTSSCS-EEEEETTTCCEEEEECCSSCCCCEEEECCCTTSS
T ss_pred EEEecCCCCCCc-cEEEECCCCcEEEEcCCCCCCCceeEEecCCCCC
Confidence 666664 13 6789999999998876543445556666777633
No 389
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=22.43 E-value=3.7e+02 Score=23.06 Aligned_cols=104 Identities=15% Similarity=0.188 Sum_probs=59.0
Q ss_pred CCcEEEEeecCCCCcEEEEEccC----C---cee--eeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC-----
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYAS----K---RTK--FIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG----- 291 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~----~---~~~--~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~----- 291 (432)
+..+++++ .+|.++...+.. . -.. .+.. ...+-.+........|+..+.+|. +..+....-
T Consensus 106 ~~~ll~~T---~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~-~irf~~~ev~~~gR 180 (323)
T 1wp5_A 106 NGYFLFVT---RNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGY-ALWFDESEVSIVGV 180 (323)
T ss_dssp SCEEEEEE---TTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSE-EEEEEGGGSCBCCS
T ss_pred CceEEEEe---CCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCc-EEEEEHHHCcccCC
Confidence 34455554 789999887753 1 111 1222 244555544445556778888888 777765421
Q ss_pred --ceEEEEEeCCCcCceEEEEECCCCC-EEEEEeCCCeEEEEEecCC
Q 014007 292 --TLLQEVRRGADRAEIYSLAFSSNAQ-WLAVSSDKGTVHVFNLKVN 335 (432)
Q Consensus 292 --~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 335 (432)
+-++-+... ....|.++..-+++. .|++.+..|..+..++...
T Consensus 181 ~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~ 226 (323)
T 1wp5_A 181 RAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEF 226 (323)
T ss_dssp SCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred CCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHc
Confidence 112222211 234566665434444 7888888998888887664
No 390
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=22.43 E-value=3.6e+02 Score=22.93 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=63.1
Q ss_pred CCcEEEEeecCCCCcEEEEEccCCc--------eeeeeccCCceeEEEEcCCCCEEEEEcCCCceEEEEECCCC------
Q 014007 226 VGSLVLVCPGLQKGQVRVEHYASKR--------TKFIMAHDSRIACFALTQDGQLLATSSTKGTLVRIFNTLDG------ 291 (432)
Q Consensus 226 ~~~~~~~~~g~~d~~i~i~d~~~~~--------~~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~~i~vwd~~~~------ 291 (432)
...+++++ .+|.++...+..-. ...+.. ...+-.+....+...++..+.+|. +..+....-
T Consensus 114 ~~~ll~~T---~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~-~~r~~~~ev~~~gR~ 188 (312)
T 1suu_A 114 DAYLLLTT---ASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGS-AFIFNSRDVRLTNRG 188 (312)
T ss_dssp TCEEEEEE---TTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSE-EEEEEGGGSCBCCTT
T ss_pred CCEEEEEe---CCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCc-EEEEEHHHccccCCC
Confidence 44555554 67888887764411 111222 445555555444567888888888 777776431
Q ss_pred -ceEEEEEeCCCcCceEEEEECCCCCEEEEEeCCCeEEEEEecCCC
Q 014007 292 -TLLQEVRRGADRAEIYSLAFSSNAQWLAVSSDKGTVHVFNLKVNS 336 (432)
Q Consensus 292 -~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 336 (432)
+=+..+... ....|..+..-.++..|++.+..|..+..++....
T Consensus 189 ~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~ 233 (312)
T 1suu_A 189 TQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKIS 233 (312)
T ss_dssp BCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSC
T ss_pred CCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhc
Confidence 112222211 23456666655566778888999999999887653
No 391
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=20.70 E-value=1.3e+02 Score=23.00 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=22.2
Q ss_pred ceEEEEccCCCEEEEEecCCeEEEEEecCCCC
Q 014007 383 PYIVAFGHQKNTVVILGMDGSFYRCQFDPVNG 414 (432)
Q Consensus 383 v~~~~~s~~~~~l~~~~~dg~v~iw~~~~~~~ 414 (432)
+.=+.|.|++.+.+.+...| ..-++|...+
T Consensus 112 lEp~eF~p~~~w~a~~~esG--~f~dvDLse~ 141 (164)
T 1zso_A 112 IELIDFFPSNNFIVEDTKGK--LYYDVNLSDQ 141 (164)
T ss_dssp EEEEEECCCSCEEEEETTSC--EEEEECCTTS
T ss_pred eeeEEEecCCcEEEEECCCC--cEEeeecCCC
Confidence 34589999999999888788 4446666554
Done!