BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014009
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GP4|A Chain A, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
pdb|2GP4|B Chain B, Structure Of [fes]cluster-free Apo Form Of
6-phosphogluconate Dehydratase From Shewanella
Oneidensis
Length = 628
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 181/380 (47%), Gaps = 27/380 (7%)
Query: 40 QVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAED 99
++ ++ G + Q + S AG C TAN+ +E G+ LP SS + +D
Sbjct: 212 RIRQQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQLXLEVXGLQLPGSSFVNPDD 271
Query: 100 PLKLDECRLAGKYLLELLRMDLKPR---DIITKKSLRNAMVIVMALGGSTNAVLHLIAIA 156
PL+ + A K + L + + +++ +KS+ N +V ++A GGSTN H++A A
Sbjct: 272 PLREALNKXAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTXHIVAAA 331
Query: 157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCM 216
R+ G+ ++ D+F ++SD VP LA + P+G + H GG +I+ LL+ G L D
Sbjct: 332 RAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGXAFLIKELLDAGLLHEDVN 391
Query: 217 TVTGKTLAENAKTFPHLSEGQ-------------DIIRPLSNPIKKTGHIQVLRGNLAPE 263
TV G L + P L +G+ +++ ++ P + G +++L+GNL
Sbjct: 392 TVAGYGLRRYTQE-PKLLDGELRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR- 449
Query: 264 GSVAKITGKEGLY--FSGPALVFEGEESMIAAISEDPMSFKGKVVVIRXXXXXXXXXXXX 321
+V K++ + + PA+V + + + A + VVV
Sbjct: 450 -AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANGXPELH 508
Query: 322 XLTPTSAIMGA--GLGKEVALLTDGRXXXXXXXX-XXXXXCPEAQDGGPIGLIQNGDIIN 378
LTP ++G+ G +VAL TDGR PEA DGG I +Q+GD+I
Sbjct: 509 KLTP---LLGSLQDKGFKVALXTDGRXSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIR 565
Query: 379 IDVQKRRIDVQLTDEEMEER 398
+D + + ++D E+ R
Sbjct: 566 VDALTGELSLLVSDTELATR 585
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 189 MEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
E VH+ V++Y+ E F + D K + ENAK FP + G++I+
Sbjct: 18 WEAVHEYTSDSDVMKYIPEGVFTEEDTRNFVNKNMGENAKNFPVILIGENIL 69
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 202 IRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLA 261
IR+L ELG L+ + + E KTFP E +DII + +K + RG+
Sbjct: 375 IRHLRELG-LEVPLSEIVALHIKELHKTFPEFKEMEDIILEMIELEEKKYAETLRRGSDL 433
Query: 262 PEGSVAKITGK 272
+AK+ K
Sbjct: 434 VRREIAKLKKK 444
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 239 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAA 293
++R ++N +++ I + G+ + E +A I F G V+E ++++IAA
Sbjct: 121 VVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAA 175
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 239 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAA 293
++R ++N +++ I + G+ + E +A I F G V+E ++++IAA
Sbjct: 121 VVRRINNALQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIAA 175
>pdb|1BK4|A Chain A, Crystal Structure Of Rabbit Liver
Fructose-1,6-Bisphosphatase At 2.3 Angstrom Resolution
Length = 337
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 172 SDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFP 231
+D+ PF D+ ++VME+ K GGT + + L L C V + A
Sbjct: 1 ADKAPFDTDISTMTRFVMEEGRKAGGTGEMTQLLNSL------CTAVKAISTAVRKAGIA 54
Query: 232 HL 233
HL
Sbjct: 55 HL 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,252,000
Number of Sequences: 62578
Number of extensions: 496416
Number of successful extensions: 1292
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1285
Number of HSP's gapped (non-prelim): 7
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)