Query 014009
Match_columns 432
No_of_seqs 170 out of 1163
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 00:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00110 ilvD dihydroxy-acid 100.0 8E-171 2E-175 1332.1 48.1 430 1-431 103-535 (535)
2 PRK00911 dihydroxy-acid dehydr 100.0 2E-169 4E-174 1324.6 47.0 428 1-431 123-550 (552)
3 PF00920 ILVD_EDD: Dehydratase 100.0 1E-171 3E-176 1333.4 17.7 427 1-428 93-521 (521)
4 COG0129 IlvD Dihydroxyacid deh 100.0 4E-167 9E-172 1305.2 46.2 430 1-431 134-571 (575)
5 PRK06131 dihydroxy-acid dehydr 100.0 2E-166 4E-171 1305.5 47.1 425 1-431 125-556 (571)
6 PRK13016 dihydroxy-acid dehydr 100.0 7E-166 2E-170 1300.9 46.6 425 1-431 129-561 (577)
7 PRK13017 dihydroxy-acid dehydr 100.0 3E-165 6E-170 1298.6 47.8 427 1-431 134-577 (596)
8 PRK12448 dihydroxy-acid dehydr 100.0 4E-164 8E-169 1292.0 46.2 430 1-431 125-609 (615)
9 PRK09054 phosphogluconate dehy 100.0 3E-156 6E-161 1231.5 46.9 418 1-430 158-600 (603)
10 TIGR01196 edd 6-phosphoglucona 100.0 3E-156 7E-161 1229.6 46.0 418 1-430 157-599 (601)
11 TIGR03432 yjhG_yagF probable d 100.0 2E-150 4E-155 1190.8 44.7 426 1-431 160-632 (640)
12 PRK08211 putative dehydratase; 100.0 4E-147 8E-152 1164.3 45.1 426 1-431 166-638 (655)
13 KOG2448 Dihydroxy-acid dehydra 100.0 1E-142 3E-147 1065.0 36.4 432 1-432 161-596 (596)
14 PRK09372 ribonuclease activity 89.5 2.7 5.8E-05 39.2 9.3 99 276-382 31-149 (159)
15 PRK08296 hypothetical protein; 88.2 1.3 2.9E-05 49.1 7.4 89 273-389 506-602 (603)
16 PRK12487 ribonuclease activity 85.7 5.8 0.00013 37.2 9.1 102 276-386 31-152 (163)
17 TIGR01935 NOT-MenG RraA famliy 84.4 4.4 9.6E-05 37.4 7.6 99 276-382 27-145 (150)
18 PRK06241 phosphoenolpyruvate s 81.8 1.4 3.1E-05 50.7 4.0 90 272-389 773-869 (871)
19 TIGR02798 ligK_PcmE 4-carboxy- 78.1 14 0.0003 36.2 9.0 103 277-388 49-172 (222)
20 TIGR01418 PEP_synth phosphoeno 69.2 22 0.00049 40.8 9.2 103 274-404 362-474 (782)
21 PF02969 TAF: TATA box binding 66.7 6.6 0.00014 31.7 3.1 58 72-137 3-66 (66)
22 PRK03955 hypothetical protein; 64.5 12 0.00027 33.9 4.8 38 350-389 92-129 (131)
23 cd00377 ICL_PEPM Members of th 64.5 1.1E+02 0.0024 30.0 11.9 52 145-196 158-219 (243)
24 PRK05865 hypothetical protein; 64.1 12 0.00026 43.4 5.8 88 273-389 742-837 (854)
25 PRK09262 hypothetical protein; 63.3 25 0.00053 34.5 7.0 90 289-388 67-174 (225)
26 COG2914 Uncharacterized protei 61.9 7.7 0.00017 33.7 2.8 29 369-402 63-91 (99)
27 TIGR02998 RraA_entero regulato 60.9 18 0.00038 33.9 5.3 100 276-383 31-150 (161)
28 PRK08245 hypothetical protein; 58.5 25 0.00055 34.6 6.2 89 290-388 78-185 (240)
29 PRK06464 phosphoenolpyruvate s 57.5 41 0.00089 38.8 8.5 91 275-393 365-466 (795)
30 PRK06201 hypothetical protein; 56.7 42 0.00091 32.7 7.3 91 288-387 68-175 (221)
31 TIGR03798 ocin_TIGR03798 bacte 53.6 14 0.00031 29.0 2.9 25 147-171 25-49 (64)
32 PRK12764 hypothetical protein; 51.3 22 0.00048 38.8 4.9 89 290-388 336-443 (500)
33 PRK05849 hypothetical protein; 47.2 67 0.0015 37.2 8.1 86 274-388 688-782 (783)
34 PF07862 Nif11: Nitrogen fixat 44.5 19 0.0004 26.6 2.2 46 107-168 3-48 (49)
35 PF06833 MdcE: Malonate decarb 44.3 33 0.0007 34.2 4.4 89 103-203 98-186 (234)
36 PF11720 Inhibitor_I78: Peptid 41.8 15 0.00033 28.7 1.4 29 365-393 23-51 (60)
37 TIGR02369 trimeth_pyl trimethy 35.3 2.1E+02 0.0045 31.5 9.2 120 4-151 231-363 (489)
38 KOG2776 Metallopeptidase [Gene 32.9 28 0.00062 36.8 2.1 27 354-382 88-114 (398)
39 COG1224 TIP49 DNA helicase TIP 32.7 91 0.002 33.5 5.7 151 103-308 44-195 (450)
40 PF13490 zf-HC2: Putative zinc 31.1 67 0.0014 21.9 3.1 26 37-62 3-28 (36)
41 PRK01777 hypothetical protein; 30.8 45 0.00097 28.6 2.7 63 324-401 28-90 (95)
42 PF10683 DBD_Tnp_Hermes: Herme 30.5 69 0.0015 26.2 3.5 36 108-143 15-50 (68)
43 PF04199 Cyclase: Putative cyc 29.9 63 0.0014 29.3 3.6 38 272-310 72-123 (171)
44 PF11213 DUF3006: Protein of u 29.6 55 0.0012 26.3 2.8 28 371-401 34-61 (71)
45 COG0518 GuaA GMP synthase - Gl 29.4 64 0.0014 31.0 3.7 51 14-89 47-100 (198)
46 PRK07028 bifunctional hexulose 28.9 2.1E+02 0.0046 30.2 7.9 101 276-387 262-384 (430)
47 KOG0400 40S ribosomal protein 27.7 46 0.001 30.7 2.3 40 85-127 12-51 (151)
48 PLN00072 3-isopropylmalate iso 27.3 27 0.00058 35.0 0.8 48 368-420 189-240 (246)
49 TIGR02084 leud 3-isopropylmala 25.9 30 0.00065 32.2 0.8 82 298-393 44-130 (156)
50 cd05829 Sortase_E Sortase E (S 25.2 1.4E+02 0.0031 26.9 5.0 55 337-391 36-94 (144)
51 TIGR00566 trpG_papA glutamine 23.0 73 0.0016 29.7 2.8 47 15-88 46-92 (188)
52 COG3848 Phosphohistidine swive 23.0 54 0.0012 29.1 1.8 87 275-386 11-103 (111)
53 PF09851 SHOCT: Short C-termin 22.0 75 0.0016 21.7 2.0 19 42-60 9-27 (31)
54 cd03111 CpaE_like This protein 21.9 97 0.0021 26.1 3.1 48 311-385 5-54 (106)
55 PF08069 Ribosomal_S13_N: Ribo 21.6 42 0.00091 26.8 0.7 26 101-126 24-50 (60)
56 COG3462 Predicted membrane pro 21.0 79 0.0017 28.3 2.4 18 43-60 96-113 (117)
57 cd05828 Sortase_D_4 Sortase D 21.0 1.2E+02 0.0026 26.6 3.6 51 338-392 31-83 (127)
58 PRK04181 4-diphosphocytidyl-2- 20.6 76 0.0017 31.6 2.5 46 134-179 93-143 (257)
59 TIGR02087 LEUD_arch 3-isopropy 20.3 83 0.0018 29.3 2.6 17 371-387 106-122 (154)
60 PRK06354 pyruvate kinase; Prov 20.3 4.7E+02 0.01 29.4 8.8 84 275-387 491-583 (590)
61 cd05794 S1_EF-P_repeat_2 S1_EF 20.3 81 0.0018 24.8 2.1 16 370-385 37-52 (56)
62 TIGR03123 one_C_unchar_1 proba 20.1 48 0.001 34.3 1.0 26 140-167 281-307 (318)
No 1
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=100.00 E-value=8e-171 Score=1332.15 Aligned_cols=430 Identities=53% Similarity=0.918 Sum_probs=422.1
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccC-CeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQ-GHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~-g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+|||+||||||||+||+++ ||+++++++||++|+|++|+||+|||+++|+++|||||+|+|||||||||
T Consensus 103 ~PG~lMaaarlniP~i~v~gGpm~~G~~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~a~ps~GsC~gmgTANTM~ 182 (535)
T TIGR00110 103 TPGMLMAAARLNIPSIFVTGGPMLPGHTKLGKKIDLVSAFEAVGEYAAGKISEEELEEIERSACPGCGSCSGMFTANTMA 182 (535)
T ss_pred cHHHHHHHHhcCCCEEEEeCCCccCCCCCCCCccchhhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCCcccEEHHHHHH
Confidence 69999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHh
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSV 159 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~ea 159 (432)
|++|+|||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||+++||+|||||++|||+|||+|+
T Consensus 183 ~l~EaLGl~LPGsa~ipA~~~~r~~~a~~ag~~iv~l~~~~i~p~dIlT~~a~~NAi~v~~A~GGSTNavlHL~AiA~ea 262 (535)
T TIGR00110 183 CLTEALGLSLPGCSTMLATSAEKKRIAKNSGKRIVELVKKNIKPRDILTKEAFENAITVDMALGGSTNTVLHLLAIANEA 262 (535)
T ss_pred HHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHhCCHHHHHHHHHHhcccCccccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCc
Q 014009 160 GLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDI 239 (432)
Q Consensus 160 gi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~V 239 (432)
||+|||||||+||++||+|++++|||+|+|+|||+|||+|+|||+|.+.|+||+|++|||||||+||+++++..+.|++|
T Consensus 263 Gi~l~lddfd~is~~vP~l~~l~P~G~~~~~d~~~aGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~V 342 (535)
T TIGR00110 263 GVDLSLDDFDRLSRKVPHIASLAPSGKYVMEDLHRAGGIPAVLKELDREGLLHGDTLTVTGKTLGEILEQAPVIPEGQDV 342 (535)
T ss_pred CCCCCHHHHHHHhccCCcceeecCCChhhHHHHHHcCCHHHHHHHHHHCCCcCCCCCCcCCcCHHHHHhcccccCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987643348999
Q ss_pred cCCCCCCCCCCCCEEEeeccCCCCCeEEccccCCC--ceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCC
Q 014009 240 IRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG--LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGP 317 (432)
Q Consensus 240 Ir~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~--~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgP 317 (432)
|||+++||+++|||+||||||||+|||+|+||++. ++|+|||+|||||||+++||++++|++ |||||||||||||+|
T Consensus 343 Ir~~~~P~~~~Ggl~iL~GNLaP~GaViK~sa~~~~~~~~~G~A~VF~see~a~~ai~~g~i~~-gdVvViRyeGPkGgP 421 (535)
T TIGR00110 343 IRPLDNPVHQEGGLAILKGNLAPNGAVVKIAGVDEDMTKFEGPAKVFESEEEALEAILGGKIKE-GDVVVIRYEGPKGGP 421 (535)
T ss_pred ECCccccCCCCCCEEEEecCCCcCCeEEEecccCCcccEEEEeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCCCCCCCC
Confidence 99999999999999999999999999999999754 789999999999999999999999999 999999999999999
Q ss_pred CCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHH
Q 014009 318 GMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEE 397 (432)
Q Consensus 318 GMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~ 397 (432)
||||||.+|++|.++||+++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+++||||||++
T Consensus 422 GMpEml~~t~al~g~glg~~VaLITDGRfSGas~G~~igHVsPEAa~GGpIalv~dGD~I~ID~~~r~l~l~v~~~el~~ 501 (535)
T TIGR00110 422 GMPEMLAPTSAIKGMGLGKSVALITDGRFSGGTRGLCIGHVSPEAAEGGPIALVEDGDIIIIDIPNRKLDLQVSDEELAE 501 (535)
T ss_pred ChhhhcchHHHHHhCCCCCceEEeccCccCCcCCCCEEEEEChhhhcCCcEEEEeCCCEEEEECCCCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCCChHHHHHHHHhCCCcccCcccC
Q 014009 398 RRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 398 R~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
||++|+||++++++|||++|+++|+||++||+++
T Consensus 502 R~~~~~~~~~~~~~G~l~~y~~~v~~A~~Gav~~ 535 (535)
T TIGR00110 502 RRASWKAPEPRYVKGYLAKYAKLVSSADEGAVLD 535 (535)
T ss_pred HHhhcCCCCCCCChHHHHHHHHhCcCHhhCCcCC
Confidence 9999999988899999999999999999999985
No 2
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=1.7e-169 Score=1324.65 Aligned_cols=428 Identities=58% Similarity=0.980 Sum_probs=422.4
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMAS 80 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~~ 80 (432)
+|||||||+|+|||+||||||||+||+|+||++++.++||++|+|++|+||+|||+++|+++|||||+|+||||||||||
T Consensus 123 ~Pg~lMaaarlniPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~ee~~~~e~~a~ps~GsC~~mgTANTM~~ 202 (552)
T PRK00911 123 MPGMLMAAARLNVPSIFVYGGPILPGRLKGKDLTLVSVFEAVGAYAAGKISEEELKEIERNACPGAGSCGGMFTANTMAC 202 (552)
T ss_pred cHHHHHHHHhcCCCEEEEeCCCcCCCCCCCccccHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCcccccchHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHhC
Q 014009 81 AIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVG 160 (432)
Q Consensus 81 l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~eag 160 (432)
++|+|||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||++++|+|||||++|||+|||+|+|
T Consensus 203 l~EaLGm~LPgsa~~pA~~~~r~~~a~~~G~~iv~lv~~~~~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~eaG 282 (552)
T PRK00911 203 LIEALGMSLPGSGTIPAVDAERDELAREAGEAVVELLEKDIKPRDILTREAFENAIAVDMALGGSTNAVLHLLAIAHEAG 282 (552)
T ss_pred HHHHHhCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCChHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCcc
Q 014009 161 LELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240 (432)
Q Consensus 161 i~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~VI 240 (432)
|+|||||||+||++||+|+|++|+|+|+|+|||+|||+|+|||+|.+.|+||+|++|||||||+|||++++. +|++||
T Consensus 283 i~l~l~dfd~is~~vP~l~~~~P~G~~~~~dl~~AGGvpavlk~L~~~glL~~d~~TVtG~Tl~e~l~~~~~--~d~~VI 360 (552)
T PRK00911 283 VDLTLDDFNRISKRTPHLADLKPSGKYVMEDLHEAGGIPAVMKELLDAGLLHGDCLTVTGKTLAENLADAPD--PDQDVI 360 (552)
T ss_pred CCCCHHHHHHHhccCCceeeecCCChHHHHHHHHcCCHHHHHHHHHHCCCcCCCCCCcCCCCHHHHHhcCCC--CCCCeE
Confidence 999999999999999999999999999999999999999999999999999999999999999999998864 489999
Q ss_pred CCCCCCCCCCCCEEEeeccCCCCCeEEccccCCCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCC
Q 014009 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMP 320 (432)
Q Consensus 241 r~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMp 320 (432)
||+++||+++|||+||+|||||+|||+|+||++...|+|||+|||||||+++||++++|++ |||||||||||||+||||
T Consensus 361 r~~~~P~~~~ggl~vL~GNLaP~GaViK~sa~~~~~~~GpA~VF~see~a~~ai~~g~I~~-gdVvViRyeGPkGgPGMp 439 (552)
T PRK00911 361 RPLDNPISPTGGLAILKGNLAPEGAVVKIAGVKPEMFTGPARVFDSEEEAMEAILAGKIKA-GDVVVIRYEGPKGGPGMR 439 (552)
T ss_pred CCccccCCCCCCEEEEecCCCCCceEEEccccCCcceeeeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCCCCCCCCChH
Confidence 9999999999999999999999999999999887779999999999999999999999999 999999999999999999
Q ss_pred CCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHh
Q 014009 321 EMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRR 400 (432)
Q Consensus 321 Eml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~R~~ 400 (432)
|||.+|++|+++||+++|||||||||||+|+|+||||||||||+|||||+|||||+|+||+++|+|+|+||||||++||+
T Consensus 440 Eml~~t~al~g~Gl~~~valITDGRfSG~s~G~~igHvsPEAa~GGpIalv~dGD~I~IDi~~r~l~l~v~~eel~~R~~ 519 (552)
T PRK00911 440 EMLAPTSAIVGAGLGDDVALITDGRFSGGTRGLCVGHVSPEAAVGGPIALVEDGDIITIDAPNRTLDVLVSDEELARRRA 519 (552)
T ss_pred HHhhHHHHHHhCCCCCceEEecccccCccccCCEEEEEChhhcCCCcEEEEeCCCEEEEecCCCEEEEecCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCChHHHHHHHHhCCCcccCcccC
Q 014009 401 KWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 401 ~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
+|++|++++++|||++|+++|+||++||+++
T Consensus 520 ~~~~~~~~~~~G~l~~Y~~~v~~A~~Gav~~ 550 (552)
T PRK00911 520 AWKPPEPKYKRGVLAKYAKLVSSASTGAVTD 550 (552)
T ss_pred hCCCCCCcCChHHHHHHHHhCcCHhcCCcCC
Confidence 9999988899999999999999999999986
No 3
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=100.00 E-value=1.3e-171 Score=1333.44 Aligned_cols=427 Identities=54% Similarity=0.927 Sum_probs=317.7
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMAS 80 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~~ 80 (432)
+|||||||+|+|||+||||||||+||+++|+++++.++||++|+|++|+||+|||+++|+++|||+|+|+||||||||+|
T Consensus 93 ~Pg~lMaaarlniPsi~v~gGpm~~G~~~G~~~~~~~~~e~~g~~~~G~i~~~el~~~e~~acp~~G~C~~mgTANTM~~ 172 (521)
T PF00920_consen 93 VPGMLMAAARLNIPSIFVYGGPMLPGKYRGERIDITDVFEAVGAYAAGEISEEELEEIECNACPGPGSCAGMGTANTMAC 172 (521)
T ss_dssp CHHHHHHHHTTTS-EEE--------------------------------THHHHHHHTTSS-HHHHHHHHH--------H
T ss_pred cHHHHHHHHHcCCCEEEEecCCCCCCcccccccchhHHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCcCcchhhHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHhC
Q 014009 81 AIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVG 160 (432)
Q Consensus 81 l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~eag 160 (432)
++|||||+|||||++||++++|.++|+++|++||+|+++++|||||||++||+|||+++||+|||||++|||+|||+|+|
T Consensus 173 ~~EaLGmsLPgsa~~pA~~~~r~~~a~~~G~~iv~lv~~~i~prdIlT~~afeNAi~v~~A~GGSTNavlHL~AiA~eag 252 (521)
T PF00920_consen 173 LAEALGMSLPGSATIPAVDSERLRIAREAGRRIVELVEEGIRPRDILTREAFENAIRVDMAIGGSTNAVLHLLAIAREAG 252 (521)
T ss_dssp HHHHTTSS-TTCCCS-TTSHHHHHHHHHHHHHHHHTSSS---HHHHSSHHHHHHHHHHHHHTT--TCHHHHHHHHHHHTT
T ss_pred HHHHHccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHhccCcchHhhHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCcc
Q 014009 161 LELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240 (432)
Q Consensus 161 i~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~VI 240 (432)
|+|||||||+||++||+|++++|+|+|+|+|||+|||+|+|||+|.++|+||+||+|||||||+|||++++..++|++||
T Consensus 253 i~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~aGGvpavmk~L~~~GlL~~d~~TVtG~Tl~e~l~~~~~~~~~~~VI 332 (521)
T PF00920_consen 253 IDLTLDDFDRISRETPVLADLKPSGKYTMEDLHAAGGVPAVMKELLDAGLLHGDALTVTGKTLGENLADAEIKDPDQEVI 332 (521)
T ss_dssp ----HHHHHHHHTT--B-B--GGGSS--HHHHHHHTHHHHHHHHHHHTT-S----EETTEE-GGGGGEEEESS-S-TTTB
T ss_pred CCCCHHHHHHHHHhhhheEEeCCCCccHHHHHHHhcCHHHHHHHhcccccccCCCCccCCCCHHHHHhCCCCCCCCCCEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987555678899
Q ss_pred CCCCCCCCCCCCEEEeeccCCCCCeEEccccC--CCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCC
Q 014009 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGK--EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPG 318 (432)
Q Consensus 241 r~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~--~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPG 318 (432)
||+++|++++|||+||||||||+|||+|+|++ ++++|+|||+|||||||+++||++++|++ |||||||||||||+||
T Consensus 333 ~~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sav~~~~~~~~G~A~VFdsee~a~~ai~~~~i~~-gdVvVIRyeGPkGgPG 411 (521)
T PF00920_consen 333 RPLDNPISPEGGLAVLRGNLAPDGAVVKTSAVSPEMRRFTGPARVFDSEEDAIDAIDDGKIKP-GDVVVIRYEGPKGGPG 411 (521)
T ss_dssp --TTS-SBSS--EEEEEETTEE--EEEE-TTS-GGGSEEEEEEEEESSGGGHHHHHHTTTTSS-SEEEEE-S-SHHHH-S
T ss_pred echhhcCCCCCCEEEeEcCCCCccEEEEccccCCcccEEEEEEEEeCCHHHHHHHHhcCCcCC-CCEEEEeCCCCCcCcC
Confidence 99999999999999999999999999999997 78899999999999999999999999999 9999999999999999
Q ss_pred CCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHH
Q 014009 319 MPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEER 398 (432)
Q Consensus 319 MpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~R 398 (432)
|||||.+|++|.++||+++|||||||||||+|+|+||||||||||+|||||+|||||+|+||+++|+|+|+||+|||++|
T Consensus 412 MpEml~~t~al~g~Glg~~valITDGRfSG~t~G~~vgHvsPEAa~GGpIalV~dGD~I~IDi~~r~l~l~v~deel~~R 491 (521)
T PF00920_consen 412 MPEMLSPTAALVGMGLGKSVALITDGRFSGATRGPCVGHVSPEAAVGGPIALVRDGDRITIDIPNRRLDLLVSDEELARR 491 (521)
T ss_dssp --B--SSHHHHHHHCTT--EEEEESSB-SSS-SS-EEEEEES-GGGT-GGGC--TT-EEEEETTTTEEEE-S-HHHHCC-
T ss_pred chhhhhHHHHHhhCCCCCceeEeecCccCCcccCCEEEEECccccCCCCeEEEcCCCEEEEECCCCEEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCChHHHHHHHHhCCCcccCc
Q 014009 399 RRKWTPPPNKVNRGVLYKYIKNVQSASNGC 428 (432)
Q Consensus 399 ~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA 428 (432)
|++|+||++++.+|||++|+++|+||++||
T Consensus 492 ~~~w~~~~~~~~~G~l~~Y~~~v~~A~~GA 521 (521)
T PF00920_consen 492 RAAWKPPPPKYKRGYLAKYARLVSSASKGA 521 (521)
T ss_dssp ------GGGTSSGGGCHHHHCT---GGGTS
T ss_pred HhhcCCCCCCCChHHHHHHHHhCcchhccC
Confidence 999999999999999999999999999997
No 4
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-167 Score=1305.22 Aligned_cols=430 Identities=51% Similarity=0.856 Sum_probs=420.6
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMAS 80 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~~ 80 (432)
+|||||||+|+|||+||||||||++|++++++..++++||++++|.+|+||+|||+++|+++|||||+|+||||||||||
T Consensus 134 ~PG~lmaa~r~niPaIfv~gGpM~~G~~~~~~~~~~~~~~~~~~~~aG~is~ee~~~~E~~acps~GsC~~mgTAnTm~~ 213 (575)
T COG0129 134 TPGMLMAAARLNIPAIFVSGGPMLAGKVNGEKAGGTSVFEAVGAYAAGKISREELLEIERSACPSPGSCSGMGTANTMNC 213 (575)
T ss_pred cHHHHHHHHhcCCCEEEecCCcCCCCccCCccccchhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCcccccccHhHHHH
Confidence 79999999999999999999999999999898889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHhC
Q 014009 81 AIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVG 160 (432)
Q Consensus 81 l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~eag 160 (432)
++|+|||+||||+++||++++|.++++++|++||+|++++++||||+|++||+|||+++||+|||||++|||+|||||||
T Consensus 214 l~EaLGlsLPgsa~~pa~~~~r~~l~~~ag~~ivel~~~~i~p~~IlT~~AfeNAi~v~~A~GGSTN~vLHLlAiA~~aG 293 (575)
T COG0129 214 LAEALGLSLPGSASIPATSAERKALAREAGRRIVELVEEDIKPRDILTKKAFENAIVVDMATGGSTNAVLHLLAIAREAG 293 (575)
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCHHHccCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcChHHHHHhhcCCCceeeccCCC-hhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCC-CCCC
Q 014009 161 LELSIDEFQKVSDEVPFLADLKPSG-KYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLS-EGQD 238 (432)
Q Consensus 161 i~l~l~dfd~is~~~P~l~~~~P~G-~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~-~d~~ 238 (432)
|+|||||||+||++||+||||+||| +|+|+|||+|||+|+|||+|.+.||||+|++||||+|++|||++++..+ ++++
T Consensus 294 v~ltldD~d~is~~vP~L~~v~Png~~y~~~d~~~AGGvp~v~~~L~~~GLLh~D~~TV~G~Tl~e~l~~~~~~~~~~~~ 373 (575)
T COG0129 294 VDLTLDDFDRISRKVPLLAKVYPNGGKYDMEDFHRAGGVPAVMKELLKAGLLHGDVLTVTGKTLGENLEGAEIRDTPDRD 373 (575)
T ss_pred CCCCHHHHHHHhccCCeEEEecCCCCcccHHHHHHccCHHHHHHHHHHcCCcCCCcceeeCcCHHHHHhhccccCCcchh
Confidence 9999999999999999999999987 9999999999999999999999999999999999999999999987642 3689
Q ss_pred ccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCC
Q 014009 239 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 239 VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGg 316 (432)
||||+++||+++|||+||+|||||+|||+|+||++ .++|+|||+|||||||+++||++|+|++ ||||||||||||||
T Consensus 374 vir~~~~p~~~~GGl~vL~GNLap~gaViK~sav~~~~~~~eGpA~VFds~e~~~~ai~~g~l~~-g~VvVIRyeGPkGg 452 (575)
T COG0129 374 VIRPLDNPFSADGGLAVLKGNLAPDGAVIKTSAVDPEIRVFEGPARVFDSQEDAIKAILDGELKA-GDVVVIRYEGPKGG 452 (575)
T ss_pred hcccCCCCcCCCCCeEEeecccCCCCceEEeeccCchhceEEeeeEEECCHHHHHHHHhcCCCCC-CeEEEEeccCCCCC
Confidence 99999999999999999999999999999999976 6789999999999999999999999999 99999999999999
Q ss_pred CCCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHH
Q 014009 317 PGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEME 396 (432)
Q Consensus 317 PGMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~ 396 (432)
|||||||.+|++|.++||+++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+++||||||+
T Consensus 453 pGMpEml~~t~~L~~~glg~~vaLITDGRfSG~s~g~~igHvsPEAa~GGpIalvrdGD~I~ID~~~~~l~l~vseeEla 532 (575)
T COG0129 453 PGMPEMLKPTSALKGKGLGKKVALITDGRFSGASRGPSIGHVSPEAAEGGPIALVRDGDIIRIDIPNRTLDLLVSEEELA 532 (575)
T ss_pred CCchhhhhhhHHHHhCCCCCceeEecccccCCCCCCCeeeeeChhhhcCCcEEEEecCCEEEEECCCCeeeeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCC----CCCChHHHHHHHHhCCCcccCcccC
Q 014009 397 ERRRKWTPPP----NKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 397 ~R~~~~~~~~----~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
+||++|+++. +++.||||++|+++|+||++||+++
T Consensus 533 ~R~~~~~~~~~~~~~~~~~~~l~~y~~~v~sA~~Gav~~ 571 (575)
T COG0129 533 ARRAEWPAPGDPAWPRYGRGLLAAYRKLVSSADKGAVLD 571 (575)
T ss_pred HHHhhccCccccCCcccchHHHHHHHHhccccccCceec
Confidence 9999998776 7899999999999999999999985
No 5
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=100.00 E-value=1.9e-166 Score=1305.50 Aligned_cols=425 Identities=42% Similarity=0.712 Sum_probs=416.8
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeec-ceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTY-DIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~-~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+|||+||||||||+||+++||++ ++.++||++|+|++|+||+|||+++|+++|||+|+|+|||||||||
T Consensus 125 ~PG~lMaa~rlniPsi~v~gGpm~~G~~~g~~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~a~p~~GsC~gmgTANTM~ 204 (571)
T PRK06131 125 TPALLMGAASVDLPAIVLSGGPMLNGKHKGERLGSGTDVWKYWEELRAGEIDLEEFLEAEAGMARSAGTCNTMGTASTMA 204 (571)
T ss_pred cHHHHHHHHhcCCCEEEEeCCCcCCCCCCCcCcccchhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccchhHHHHH
Confidence 699999999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHh
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSV 159 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~ea 159 (432)
|++|+|||+||||+++||++++|+++|+++|++||+|++++++||||||++||+|||+++||+|||||++|||+|||+|+
T Consensus 205 ~~~EaLGl~LPgsa~~pA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~a~~NAi~v~~A~GGSTNavlHL~AIA~ea 284 (571)
T PRK06131 205 CMAEALGMSLPGNAAIPAVDARRIRMAELTGRRIVEMVHEDLKPSDILTREAFENAIRVNAAIGGSTNAVIHLIAIAGRA 284 (571)
T ss_pred HHHHHHhcCCCcCcCCCCCCHHHHHHHHHHHHHHHHHHhcCCCHHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCc
Q 014009 160 GLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDI 239 (432)
Q Consensus 160 gi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~V 239 (432)
||+|||+|||+||++||+|++++|+|+|+|+|||+|||+|+|||+|.+ +||+|++|||||||+|||++++. +|++|
T Consensus 285 gi~l~l~dfd~is~~vP~l~~l~P~G~~~~~d~~~aGGvp~vlk~L~~--lL~~d~~TVtG~tl~e~l~~~~~--~d~~V 360 (571)
T PRK06131 285 GVELDLDDWDRIGRDVPVLVNLQPSGEYLMEDFYYAGGLPAVLRELGE--LLHLDALTVNGKTLGENLAGAPV--YNDDV 360 (571)
T ss_pred CCCCCHHHHHHHhccCCeeEEecCCCcccHHHHHHccCHHHHHHHHHH--HhcCCCCCcCCCCHHHHHhCCCC--CCCCe
Confidence 999999999999999999999999999999999999999999999998 99999999999999999998753 48999
Q ss_pred cCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCC--CCCcEEEEeCCCCCC
Q 014009 240 IRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMS--FKGKVVVIRGEGPKG 315 (432)
Q Consensus 240 Ir~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~--~~gdVvViRyeGPkG 315 (432)
|||+++||+++|||+||+|||||+|||+|+||++ +++|+|||||||||||+++||++++|+ + |||||||||||||
T Consensus 361 I~~~~~P~~~~Ggl~vL~GNLaP~GaViK~sav~~~~~~~~G~A~VF~see~a~~ai~~g~i~i~~-gdVvVIRyeGPkG 439 (571)
T PRK06131 361 IRPLDNPLKPEGGIAVLRGNLAPDGAVIKPSAASPELLKHEGRAVVFEGYEDYKARIDDPDLDVDE-DTVLVLRNAGPKG 439 (571)
T ss_pred eCChhccCCCCCCeEEeecCCCCCCceeeecccCccccEEEeeeEEECCHHHHHHHHhCCCcCCCC-CeEEEEeCCCCCC
Confidence 9999999999999999999999999999999975 478999999999999999999999965 9 9999999999999
Q ss_pred CCCCCC--CcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHH
Q 014009 316 GPGMPE--MLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDE 393 (432)
Q Consensus 316 gPGMpE--ml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~e 393 (432)
|||||| ||.+|++|+++|| ++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+|+||||
T Consensus 440 gPGMpE~~mL~~t~al~g~Gl-~~vaLITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~r~l~l~vs~~ 518 (571)
T PRK06131 440 YPGMPEVGNMPIPKKLLRQGV-KDMVRISDARMSGTAYGTVVLHVAPEAAAGGPLALVRTGDRIRLDVPARRLDLLVSDE 518 (571)
T ss_pred CCCCccccccccHHHHHhCCC-ceeEEeccCCcCcccCCCeEEEEChhhccCCcEEEEeCCCEEEEecCCCEEEEecCHH
Confidence 999999 9999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHHHhCCCcccCcccC
Q 014009 394 EMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 394 el~~R~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
||++||++|++|++++++|||++|+++|+||++||+++
T Consensus 519 el~~R~~~~~~~~~~~~~G~l~~Y~~~v~sA~~Ga~~~ 556 (571)
T PRK06131 519 ELARRRAAWPPPPPRAERGYQELYRDHVLQADEGCDFD 556 (571)
T ss_pred HHHHHHHhcCCCCCcCCcHHHHHHHHhCcCHhhCCccc
Confidence 99999999999888899999999999999999999986
No 6
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=7.2e-166 Score=1300.94 Aligned_cols=425 Identities=40% Similarity=0.681 Sum_probs=412.4
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeec-ceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTY-DIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~-~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+|||+||||||||+||.++|+++ ++.++||++|+|++|+||+|||+++|+++|||||+|+|||||||||
T Consensus 129 ~Pg~lMaaarlniPsI~v~GG~m~~G~~~g~~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~a~p~~GsC~gmgTANTM~ 208 (577)
T PRK13016 129 TPGLVMGAISMGLPMIYLPAGPMLRGNYRGKVLGSGSDAWKYWDERRAGNITQAEWLEIEGGIARSYGTCMTMGTASTMT 208 (577)
T ss_pred cHHHHHHHHhcCCCEEEEecCCCCCCccCCceechhHHHHHHHHHHHcCCCCHHHHHHHHhccCCCCCcccccCHHHHHH
Confidence 699999999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHh
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSV 159 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~ea 159 (432)
|++|||||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||+++||+|||||++|||+|||+|+
T Consensus 209 ~~~EaLGm~LPGsa~~pA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTNavlHL~AIA~ea 288 (577)
T PRK13016 209 AIAEALGLTLPGASSIPAADANHQRMAALCGRRIVEMVWEDLTPSQILTKAAFENAITVAMATGCSTNAVIHLIAMARRA 288 (577)
T ss_pred HHHHHHhcCCCcCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHHHhcccCccccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHhhcCCCceeeccCCCh-hhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCC
Q 014009 160 GLELSIDEFQKVSDEVPFLADLKPSGK-YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQD 238 (432)
Q Consensus 160 gi~l~l~dfd~is~~~P~l~~~~P~G~-~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~ 238 (432)
||+|||||||+||++||+|++++|+|+ |+|+|||+|||+|+|||+|.+ .||+|++|||||||+|||++++. .|++
T Consensus 289 gv~l~lddfd~is~~vP~l~~l~P~G~~~~~~d~~~AGGvpavmk~L~~--~L~~d~lTVtG~Tl~e~l~~~~~--~d~~ 364 (577)
T PRK13016 289 GVPLSLDDLDRCGRTVPVIANIRPSGKTYLMEDFFYAGGLRALMKQLGD--KLHLDALTVTGKTLGDNLEGAKV--YNDD 364 (577)
T ss_pred CCCCCHHHHHHHhccCcccceecCCCCcccHHHHHHhcCHHHHHHHHHH--HhcCCCCCcCCCCHHHHHcCCCC--CCCC
Confidence 999999999999999999999999999 999999999999999999998 49999999999999999998753 3789
Q ss_pred ccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCC--CCCcEEEEeCCCCC
Q 014009 239 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMS--FKGKVVVIRGEGPK 314 (432)
Q Consensus 239 VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~--~~gdVvViRyeGPk 314 (432)
||||+++||+++|||+||+|||||+|||+|+|+++ +++|+|||+|||||||+++||++++|+ + ||||||||||||
T Consensus 365 VI~~~~~P~~~~Ggl~iL~GNLAP~GaViK~sav~~~~~~~~GpA~VF~see~a~~ai~~g~i~i~~-GdVvVIRyeGPk 443 (577)
T PRK13016 365 VIRPLDNPVYAEGSLAVLRGNLAPDGAVIKPAACDPKFLVHRGPALVFDSYPEMKAAIDDENLDVTP-DHVMVLRNAGPQ 443 (577)
T ss_pred eeCChhcccCCCCCEEEeecCCCCCceEEEecccCCcccEEEeeEEEECCHHHHHHHHhCCCcCCCC-CeEEEEeCCCCC
Confidence 99999999999999999999999999999999975 478999999999999999999999654 9 999999999999
Q ss_pred CCCCCCC--CcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCH
Q 014009 315 GGPGMPE--MLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTD 392 (432)
Q Consensus 315 GgPGMpE--ml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~ 392 (432)
||||||| ||.++.++..+|| ++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++|+|+|+||+
T Consensus 444 GgPGMpE~~ml~~~~~~~~~Gl-~~valITDGRfSG~s~G~~igHVsPEAa~GGPIalV~dGD~I~IDi~~r~L~l~vs~ 522 (577)
T PRK13016 444 GGPGMPEWGMLPIPKKLLKQGV-RDMVRISDARMSGTSYGACVLHVAPEAYVGGPLALVRTGDIIELDVPARRLHLLVSD 522 (577)
T ss_pred CCCCCcccccchhHHHHHHcCC-ceeEEeccCccCCccCCCEEEEEChhhhcCCcEEEEeCCCEEEEEcCCCEEEEecCH
Confidence 9999999 9995555666999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCChHHHHHHHHhCCCcccCcccC
Q 014009 393 EEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 393 eel~~R~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
|||++||++|+||++++++|||++|+++|+||++||+++
T Consensus 523 eel~~R~~~~~~~~~~~~~G~l~~Y~~~v~sA~~Gav~~ 561 (577)
T PRK13016 523 EELARRRAAWQPPERRYERGYGWMFSQHVEQADKGCDFD 561 (577)
T ss_pred HHHHHHHHhcCCCCCcCCcHHHHHHHHhCcCHhhCCccc
Confidence 999999999999988999999999999999999999986
No 7
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=2.9e-165 Score=1298.57 Aligned_cols=427 Identities=39% Similarity=0.649 Sum_probs=416.1
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeec-ceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTY-DIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~-~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+|||+||||||||+||.++|+++ ++.++||++|+|++|+||+|||+++|+++|||||+|+|||||||||
T Consensus 134 ~PG~lMaaarlniP~i~v~GG~m~~G~~~g~~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~gmgTANTM~ 213 (596)
T PRK13017 134 TPACLMAAATVDLPAIVLSGGPMLDGWHEGERVGSGTVIWKARELLAAGEIDYEEFMELVASSAPSVGHCNTMGTASTMN 213 (596)
T ss_pred cHHHHHHHHhcCCCEEEEeCCCcCCCCCCCcCcccchhHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccccHHHHHH
Confidence 699999999999999999999999999999999 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHh
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSV 159 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~ea 159 (432)
|++|||||+||||+++||++++|+++|+++|++||+|+++++|||||||++||+|||+++||+|||||++|||+|||+|+
T Consensus 214 ~l~EaLGm~LPgsa~~pA~~~~r~~~a~~aG~~iv~lv~~~i~p~dIlT~~afeNAi~v~~A~GGSTNavlHL~AIA~ea 293 (596)
T PRK13017 214 ALAEALGMSLPGCAAIPAPYRERGQMAYATGKRIVEMVWEDLKPSDILTREAFENAIVVNSAIGGSTNAPIHLIAIARHA 293 (596)
T ss_pred HHHHHHhCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCChHHhcCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCc
Q 014009 160 GLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDI 239 (432)
Q Consensus 160 gi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~V 239 (432)
||+|||+|||+||++||+|++++|+|+|+|+|||+|||+|+|||+|.++|+||+|++|||||||+|||++++. +|++|
T Consensus 294 gi~l~lddfd~is~~vP~l~~l~PsG~~~m~Dl~~aGGvpavmk~L~~~glL~~d~lTVtG~Tl~e~l~~~~~--~~~~V 371 (596)
T PRK13017 294 GVELSLDDWQRVGEDVPLLVNLQPAGKYLGEDFHRAGGVPAVLAELLRAGLLHGDALTVSGRTIGENIAGAPA--PDRDV 371 (596)
T ss_pred CCCCCHHHHHHHhccCCeeEEecCCCcccHHHHHHCcCHHHHHHHHHHCCCcCCCCCCcCCcCHHHHhccCcC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998753 47899
Q ss_pred cCCCCCCCCCCCCEEEeeccCCCCCeEEccccCCC-c------------eeeeeEEEeCCHHHHHHHHhCCCCCCC-CcE
Q 014009 240 IRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG-L------------YFSGPALVFEGEESMIAAISEDPMSFK-GKV 305 (432)
Q Consensus 240 Ir~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~-~------------~~~GpA~VF~see~a~~ai~~g~i~~~-gdV 305 (432)
|||+++|++++|||+||||||| +|||+|+||++. . +|+|||+|||||||+++||++++|+.+ |||
T Consensus 372 I~p~~~P~~~~ggl~vL~GNLA-~GAViK~sav~~~~~~~~~~~~~~~~~~~GpA~VF~see~a~~ai~~g~i~~~~gdV 450 (596)
T PRK13017 372 IRPYDAPLKERAGFLVLRGNLF-DSAIMKTSVISEEFRERYLSEPGDENAFEGRAVVFDGPEDYHARIDDPALDIDEHCI 450 (596)
T ss_pred cCCccccCCCCCCEEEEEecCc-CCceeEccccCHHHhhhhccccCcCCeEEEeEEEECCHHHHHHHHhCCCCCCCCCeE
Confidence 9999999999999999999999 999999999764 3 799999999999999999999977551 779
Q ss_pred EEEeCCCCCCCCCCCCC--cchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCC
Q 014009 306 VVIRGEGPKGGPGMPEM--LTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQK 383 (432)
Q Consensus 306 vViRyeGPkGgPGMpEm--l~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~ 383 (432)
||||||||||+|||||| |.+|++|+++|| ++|||||||||||+|+|+|||||||||++|||||+|||||+|+||+++
T Consensus 451 vVIRyeGPkGgPGMpEm~~l~~t~al~g~Gl-~~VaLITDGRfSGat~G~~VgHVsPEAa~GGPIalV~dGD~I~IDi~~ 529 (596)
T PRK13017 451 LVIRGAGPVGYPGSAEVVNMQPPAALLKRGI-RSLPCIGDGRQSGTSGSPSILNASPEAAVGGGLALLRTGDRIRIDLNK 529 (596)
T ss_pred EEEeCCCCCCCCCCcchhhchhHHHHHhCCC-CeeEEEcccCCCCccCCCeeEEEChhhccCCcEEEEeCCCEEEEECCC
Confidence 99999999999999998 899999999999 999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCHHHHHHHHhcCCCCCCCCChHHHHHHHHhCCCcccCcccC
Q 014009 384 RRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 384 ~~l~l~v~~eel~~R~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
|+|+|+||||||++||+.|++|++++.+|||++|+++|+||++||+++
T Consensus 530 r~l~l~vsdeEl~~R~~~~~~~~~~~~~G~l~~Y~~~v~sA~~Ga~~~ 577 (596)
T PRK13017 530 RRVDVLVSDEELARRRAALKPPVPPSQTPWQELYRKHVGQLSTGACLE 577 (596)
T ss_pred CEEEEecCHHHHHHHHHhCCCCCCcCCcHHHHHHHHhCcChhcCCccc
Confidence 999999999999999999999988899999999999999999999986
No 8
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=100.00 E-value=3.8e-164 Score=1291.97 Aligned_cols=430 Identities=40% Similarity=0.665 Sum_probs=411.4
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccCCeecc-eehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYD-IVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~g~~~~-~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+|||+||||||||+||.++++..+ -.++|+++++|++|+||+|||+++|+++|||||+|+|||||||||
T Consensus 125 ~PG~lMaaarlniPsi~v~gGpm~~G~~~~~~~g~~~~~~~~~~~~~~G~i~~eel~~~E~~a~p~~GsC~gmgTANTM~ 204 (615)
T PRK12448 125 TPGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKIIKLDLVDAMVAAADPSVSDEDVAQIERSACPTCGSCSGMFTANSMN 204 (615)
T ss_pred hHHHHHHHHhcCCCEEEEeCCCcCCCccccCCCCCCcchHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccCCHHHHHH
Confidence 6999999999999999999999999987433211 134899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhC-------CCCccccccHHHHHHHHHHHHhcCCCCchhhhH
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM-------DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHL 152 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~-------~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL 152 (432)
|++|||||+||||+++||++++|.++|+++|++||+|+++ +++||||||++||+|||+++||+|||||++|||
T Consensus 205 ~l~EaLGl~LPGsa~ipA~~~~r~~~a~~ag~~iv~lv~~~~~~~~~~i~prdIlT~~a~~NAi~v~~A~GGSTNavlHL 284 (615)
T PRK12448 205 CLTEALGLSLPGNGSLLATHADRKQLFLEAGRRIVELAKRYYEQDDESVLPRSIATKAAFENAMTLDIAMGGSTNTVLHL 284 (615)
T ss_pred HHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHcCCHHHHHHHHHHccccCccccHHHHH
Confidence 9999999999999999999999999999999999999994 999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcChHHHHHhhcCCCceeeccCC-ChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCC
Q 014009 153 IAIARSVGLELSIDEFQKVSDEVPFLADLKPS-GKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFP 231 (432)
Q Consensus 153 ~AIA~eagi~l~l~dfd~is~~~P~l~~~~P~-G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~ 231 (432)
+|||+|+||+|||+|||+||++||+||+++|+ |+|+|+|||+|||+|+|||+|.++||||+|++|||||||+|||++++
T Consensus 285 ~AIA~eaGi~l~l~dfd~is~~vP~L~~~~P~~G~~~~~d~~~AGGvpavmkeL~~~glL~~D~~TVtG~Tl~e~l~~~~ 364 (615)
T PRK12448 285 LAAAQEAEVDFTMADIDRLSRKVPCLCKVAPNTQKYHMEDVHRAGGIMGILGELDRAGLLHTDVPTVHGLTLGEALDQWD 364 (615)
T ss_pred HHHHHhcCCCCCHHHHHHHhccCCeeEEecCCCCcccHHHHHHcCCHHHHHHHHHHCCCCCCCCCCcCCcCHHHHHhccc
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999865
Q ss_pred CC-----------------------------------CCCCCccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--C
Q 014009 232 HL-----------------------------------SEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--G 274 (432)
Q Consensus 232 ~~-----------------------------------~~d~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~ 274 (432)
.. .+|++||||+++||+++|||+||+|||||+|||+|+||++ +
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAViK~sav~~~~ 444 (615)
T PRK12448 365 IMRTQDEAVKEFFRAAPGGIRTTVAFSQDCRWDSLDTDRENGCIRSVEHAYSKDGGLAVLYGNIAEDGCIVKTAGVDESI 444 (615)
T ss_pred cccCCchhhhhhhhhcCCCcccccccccccccccccccccCCEECCcccccCCCCCEEEeecCCCCCCeEEEecccCCcc
Confidence 10 1356899999999999999999999999999999999975 4
Q ss_pred ceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcc
Q 014009 275 LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFV 354 (432)
Q Consensus 275 ~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~ 354 (432)
++|+|||+|||||||+++||++++|++ |||||||||||||||||||||.+|++|+++||+++|||||||||||+|+|+|
T Consensus 445 ~~~~GpA~VFdsee~a~~ai~~g~I~~-gdVvVIRyeGPkGgPGMpEml~~t~aL~g~Glg~~VaLITDGRfSGas~G~~ 523 (615)
T PRK12448 445 LKFTGPARVFESQDDAVEAILGGKVKA-GDVVVIRYEGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLS 523 (615)
T ss_pred eEEEEeEEEECCHHHHHHHHhcCCCCC-CeEEEEeCCCCCCCcCHHHHHHHHHHHHhCCCCCceEEecccCcCCcccCCE
Confidence 789999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhc--------CCCC-CCCCChHHHHHHHHhCCCcc
Q 014009 355 VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRK--------WTPP-PNKVNRGVLYKYIKNVQSAS 425 (432)
Q Consensus 355 igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~R~~~--------~~~~-~~~~~~G~l~~Y~~~V~~A~ 425 (432)
||||||||++|||||+|||||+|+||+++|+|+|+||+|||++||++ |+|| ++++.+|||++|+++|+||+
T Consensus 524 igHVsPEAa~GGpIalV~dGD~I~IDi~~r~L~l~vs~eel~~R~~~~~~~~~~~w~~~~~~~~~~g~l~~Y~~~v~~A~ 603 (615)
T PRK12448 524 IGHVSPEAASGGAIGLVEDGDIIEIDIPNRSINLLVSDEELAARRAAQEARGDKAWKPKNRERKVSFALKAYAALATSAD 603 (615)
T ss_pred EEEEChhhccCCcEEEEeCCCEEEEECCCCEEEEeeCHHHHHHHHHhhhccccccCCCCCCCCCcCHHHHHHHHhcccHh
Confidence 99999999999999999999999999999999999999999999999 9987 36677899999999999999
Q ss_pred cCcccC
Q 014009 426 NGCVTD 431 (432)
Q Consensus 426 ~GA~~~ 431 (432)
+||+|+
T Consensus 604 ~Ga~~~ 609 (615)
T PRK12448 604 KGAVRD 609 (615)
T ss_pred cCcccc
Confidence 999986
No 9
>PRK09054 phosphogluconate dehydratase; Validated
Probab=100.00 E-value=2.9e-156 Score=1231.54 Aligned_cols=418 Identities=32% Similarity=0.529 Sum_probs=399.9
Q ss_pred ChHHHHhHHhc-CCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~-niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+ |||+||||||||++|.++||+++ .+++|++|+|++|||.++|+++|||+|+|+|||||||||
T Consensus 158 vPG~lMaA~r~g~lP~ifV~gGpM~~G~~~~e~~~------~~~~~a~G~i~~~el~~~E~~a~ps~GtC~~mgTANTm~ 231 (603)
T PRK09054 158 VPGLLIGALSFGHLPAIFVPAGPMTSGLPNKEKAR------IRQLYAEGKVGRDELLEAESASYHSPGTCTFYGTANSNQ 231 (603)
T ss_pred cHHHHHHHHhcCCCCEEEEeCCCcCCCCCCCccee------hHhHHHcCCCCHHHHHHHHhhcCCCCCcccccChHHHHH
Confidence 79999999999 79999999999999999999874 445899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhC--CCCc-cccccHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM--DLKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIA 156 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~--~i~p-rdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA 156 (432)
|++|+|||+|||||++||++++|.++|+++|++|++|+++ ++|| |||||++||+|||+++||+|||||++|||+|||
T Consensus 232 ~l~EalGl~LPGsa~ipa~~~~R~~la~~ag~~i~~l~~~~~~~~P~~~Ilt~~af~NAi~~~~A~GGSTN~vlHL~AIA 311 (603)
T PRK09054 232 MLMEVMGLHLPGSSFVNPGTPLRDALTREAARRVLRLTALGNDYTPIGEVVDEKAIVNGIVALLATGGSTNHTIHLVAMA 311 (603)
T ss_pred HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhccCCCCchhhCCHHHHHHHHHHHhccCccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 9999 999999999999999999999999999999999
Q ss_pred HHhCCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhc-------
Q 014009 157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKT------- 229 (432)
Q Consensus 157 ~eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~------- 229 (432)
+|+||+|||||||+||++||+|++++|||+|+|+|||+|||+|+|||+|+++||||+|++||||+||+||+++
T Consensus 312 ~~aGi~l~l~dfd~is~~vP~L~~v~P~G~~~~~df~~AGGvp~v~keL~~~GlLh~D~~TVtG~tl~e~~~~~~l~~~~ 391 (603)
T PRK09054 312 RAAGIILTWDDFSDLSDVVPLLARVYPNGPADVNHFQAAGGMAFLIRELLDAGLLHEDVNTVAGFGLRRYTQEPFLEDGE 391 (603)
T ss_pred HHcCCCCCHHHHHHHhccCCcceeecCCCcchHHHHHHccCHHHHHHHHHHCCCcCCCCCCcCCCCHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --CCC---CCCCCCccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCCCC
Q 014009 230 --FPH---LSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFK 302 (432)
Q Consensus 230 --~~~---~~~d~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~~~ 302 (432)
|.. ...|++||||+++||+++|||+||+||| +|||+|+||++ +++|+|||+|||||||+++||++|+|++
T Consensus 392 ~~~~~~~~~~~d~~VIr~~~~P~~~~GGl~vL~GNL--~gaViK~Sav~~e~~~~~GpA~VFdsee~~~~Ai~~g~l~~- 468 (603)
T PRK09054 392 LVWRDGPEESLDDDVLRPVADPFSPDGGLKLLSGNL--GRAVIKVSAVKPEHRVIEAPARVFDSQEEVQAAFKAGELDR- 468 (603)
T ss_pred cccccccCCCCCcCeEcCcccccCCCCCEEEEeccC--cCceeeccccCCcccEEEeeEEEECCHHHHHHHHhCCCCCC-
Confidence 221 2358999999999999999999999999 59999999965 4789999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcchh---HHHHcCCCCCceEEEcCCCCCCCCCC-cceEEecccccCCCCeEEeecCCEEE
Q 014009 303 GKVVVIRGEGPKGGPGMPEMLTPT---SAIMGAGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIIN 378 (432)
Q Consensus 303 gdVvViRyeGPkGgPGMpEml~~t---~al~g~Gl~~~valITDGRfSGas~G-~~igHVsPEAa~GGpIalV~dGD~I~ 378 (432)
||||||||||||| |||||||.+| ++|+++|+ +|||||||||||+|+| +|||||||||++|||||+|||||+|+
T Consensus 469 g~VvViR~eGPkg-~GMpEm~~~Tp~l~~L~~~Gl--~VALITDGRfSGaS~~~~~igHVsPEAa~GGPIAlV~dGD~I~ 545 (603)
T PRK09054 469 DFVVVVRFQGPKA-NGMPELHKLTPPLGVLQDRGF--KVALVTDGRMSGASGKVPAAIHVTPEALDGGPIAKVRDGDIIR 545 (603)
T ss_pred CcEEEEeCCCCCC-CCchhhhcccchhHHHHhCCC--eEEEeccCccCCcCCCCCEEEEEChhhccCCcEEEEeCCCEEE
Confidence 9999999999997 7999999988 66999998 7999999999999977 99999999999999999999999999
Q ss_pred EecCCCEEEEecCHHHHHHHHhcCCCCCC-C--CChHHHHHHHHhCCCcccCccc
Q 014009 379 IDVQKRRIDVQLTDEEMEERRRKWTPPPN-K--VNRGVLYKYIKNVQSASNGCVT 430 (432)
Q Consensus 379 IDi~~~~l~l~v~~eel~~R~~~~~~~~~-~--~~~G~l~~Y~~~V~~A~~GA~~ 430 (432)
||+++|+|+|+||||||++||+.|+++++ + ++||||++|+++|+||++||++
T Consensus 546 iD~~~~~L~v~v~~eEl~~R~~~~~~~~~~~~G~~r~~l~~y~~~V~~A~~GA~~ 600 (603)
T PRK09054 546 LDAETGELEVLVDEAELAAREPAPPDLSANRVGTGRELFAAFRQAVSSAEQGASV 600 (603)
T ss_pred EECCCCEEEEecCHHHHHHHHHhcCCCCccccCccHHHHHHHHHhCcChhcCCcc
Confidence 99999999999999999999999998765 3 3688999999999999999987
No 10
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=100.00 E-value=3e-156 Score=1229.55 Aligned_cols=418 Identities=33% Similarity=0.534 Sum_probs=400.6
Q ss_pred ChHHHHhHHhc-CCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~-niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+ |||+||||||||++|.++|+++++.+ .|++|+||+|||+++|+++|||+|+|+|||||||||
T Consensus 157 vPG~lMaA~r~g~lP~IfV~gGpM~~G~~~g~~~~~~~------~~a~G~i~~eel~~~E~~a~ps~GtC~~mgTANTm~ 230 (601)
T TIGR01196 157 VPGLLIGALSFGHLPAVFVPSGPMVSGIPNKEKAKVRQ------LFAEGKVGREELLKSEMASYHAPGTCTFYGTANSNQ 230 (601)
T ss_pred cHHHHHHHHhcCCCCEEEEeCCCcCCCCCCCceeeehh------hhhcCCCCHHHHHHHHHhcCCCCCcccccChHHHHH
Confidence 79999999999 99999999999999999999885544 699999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCC--CCc-cccccHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD--LKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIA 156 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~--i~p-rdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA 156 (432)
|++|+|||+|||||++||++++|.++|+++|++|++|++++ ++| |||||++||+|||++++|+|||||++|||+|||
T Consensus 231 ~l~EalGl~LPGsa~ipa~~~~r~~la~~ag~~iv~l~~~~~~~~p~~dIlt~~a~~NAi~~~~A~GGSTN~vlHL~AIA 310 (601)
T TIGR01196 231 MMMEFMGLHLPGASFVNPNTPLRDALTREAAKRLARMTGNGGEVLPLGEMIDEKSIVNALVGLMATGGSTNHTMHLVAMA 310 (601)
T ss_pred HHHHHhcCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHhccCCCCChHHhCCHHHHHHHHHHccCCCccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999985 999 999999999999999999999999999999999
Q ss_pred HHhCCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhc-------
Q 014009 157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKT------- 229 (432)
Q Consensus 157 ~eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~------- 229 (432)
+|+||+|||+|||+||++||+|++++|||+|+|+|||+|||+|+|||+|+++||||+|++||||+||+||+++
T Consensus 311 ~~aGi~l~~~dfd~is~~vP~La~v~P~G~~~~~df~~AGGvp~v~keL~~~glLh~D~~TVtG~tl~e~~~~p~l~~~~ 390 (601)
T TIGR01196 311 RAAGIILNWDDFSELSDLVPLLARVYPNGSADVNHFQAAGGLPFLIRELLKAGLLHEDVHTVAGKGLSRYTKEPFLENGQ 390 (601)
T ss_pred HHcCCCCCHHHHHHHhcCCCeEEEecCCCcccHHHHHHccCHHHHHHHHHHCCCcCCCCCCcCCcCHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred --CCC---CCCCCCccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCCCC
Q 014009 230 --FPH---LSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFK 302 (432)
Q Consensus 230 --~~~---~~~d~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~~~ 302 (432)
|.. ...|++||||+++||+++|||+||+|||+ |||+|+|+++ +++|+|||+|||||||+++||++|+|++
T Consensus 391 l~~~~~~~~~~d~~VIr~~~~P~~~~GGl~vL~GNL~--gaViK~sav~~e~~~~~GpA~VFdsee~~~~ai~~g~i~~- 467 (601)
T TIGR01196 391 LVWREAPEHSLDTDILRPVDDPFSANGGLKLLKGNLG--RAVIKISAVKPEHRVIEAPAIVFNDQAEVLAAFKAGELER- 467 (601)
T ss_pred cccccccCCCCCCCEECccccccCCCCCEEEEecccc--CeeeeccccCccceEEEeeEEEECCHHHHHHHHhCCCCCC-
Confidence 522 13589999999999999999999999995 8999999975 4789999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcchh---HHHHcCCCCCceEEEcCCCCCCCCCC-cceEEecccccCCCCeEEeecCCEEE
Q 014009 303 GKVVVIRGEGPKGGPGMPEMLTPT---SAIMGAGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIIN 378 (432)
Q Consensus 303 gdVvViRyeGPkGgPGMpEml~~t---~al~g~Gl~~~valITDGRfSGas~G-~~igHVsPEAa~GGpIalV~dGD~I~ 378 (432)
||||||||||||| |||||||.+| ++|+++|+ +|||||||||||+|+| +|||||||||++|||||+|||||+|+
T Consensus 468 g~VvViR~eGPkg-~GMpEm~~~t~~l~~L~~~Gl--~VALITDGRfSGaS~~g~~igHVsPEAa~GGPIAlV~dGD~I~ 544 (601)
T TIGR01196 468 DFVAVVRFQGPKA-NGMPELHKLTPPLGVLQDRGF--KVALVTDGRMSGASGKVPAAIHVTPEAALGGPIAKIRDGDLIR 544 (601)
T ss_pred CcEEEEeCCCCCC-CCchhhccCCchhHHHHhCCC--eEEEEccCccCCcCCCCCeEEEEChhhhcCCceEEEecCCEEE
Confidence 9999999999998 7999999999 59999998 7999999999999966 99999999999999999999999999
Q ss_pred EecCCCEEEEecCHHHHHHHHhcCCCC-CCCCC--hHHHHHHHHhCCCcccCccc
Q 014009 379 IDVQKRRIDVQLTDEEMEERRRKWTPP-PNKVN--RGVLYKYIKNVQSASNGCVT 430 (432)
Q Consensus 379 IDi~~~~l~l~v~~eel~~R~~~~~~~-~~~~~--~G~l~~Y~~~V~~A~~GA~~ 430 (432)
||+++|+|+|+||+|||++|++.|+++ +++++ ||||++|+++|+||++||+.
T Consensus 545 iD~~~~~L~l~v~~eEl~~R~~~~~~~~~~~~~~grg~l~~y~~~v~~A~~GA~~ 599 (601)
T TIGR01196 545 VDAVNGELNVLVDDAELNAREPETPDLSANSFGCGRELFASLRLNVSSAEEGAMS 599 (601)
T ss_pred EEcCCCEEEEecCHHHHHHHHHhcCCCCccCcCcchHHHHHHHHhCcCHhhCCcc
Confidence 999999999999999999999999984 56676 99999999999999999975
No 11
>TIGR03432 yjhG_yagF probable dehydratase, YjhG/YagF family. This homolog of dihydroxy-acid dehydratases has an odd, sparse distribution. Members are found in two Acidobacteria, two Planctomycetes, Bacillus clausii KSM-K16, and (in two copies each) in strains K12-MG1655 and W3110 of Escherichia coli. The local context is not well conserved, but a few members are adjacent to homologs of the gluconate:H+ symporter (see TIGR00791).
Probab=100.00 E-value=1.7e-150 Score=1190.79 Aligned_cols=426 Identities=36% Similarity=0.577 Sum_probs=403.0
Q ss_pred ChHHHHhHH-hcCCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCC-CCCccchHhhH
Q 014009 1 MPGTIMAMG-RLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAG-ACGGMYTANTM 78 (432)
Q Consensus 1 vPG~lMaaa-r~niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~G-sC~~mgTANTM 78 (432)
+|||||||+ |+|||+||||||||+||+ .|++++ .+|+..++|++|+||+||+.++|+++||||| +|+||||||||
T Consensus 160 ~PgmlMAaa~rlniPsI~V~GGpml~G~-~g~~~~--~~~~~~~~~~~G~is~eel~~~e~~acps~GGsC~~mgTANTM 236 (640)
T TIGR03432 160 LPAMMMALAATHHLPTVLVPGGVTLPPE-VGEDAG--KVQTIGARFSNGEITLEEAAEAGCRACASPGGGCQFLGTAATS 236 (640)
T ss_pred hHHHHHHHHHhCCCCEEEEeCCCcCCCC-CCCcch--HHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccccchHHHH
Confidence 699999998 599999999999999998 577765 3666666799999999999999999999999 99999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHH
Q 014009 79 ASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARS 158 (432)
Q Consensus 79 ~~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~e 158 (432)
||++|||||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||++++|+|||||++|||+|||+|
T Consensus 237 ~~laEALGlsLPgsa~iPA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~AfeNAi~v~~A~GGSTNavLHL~AIA~e 316 (640)
T TIGR03432 237 QVVAEALGLALPHSALAPSGQPIWLDMARRSARAALELSQKGLSTRDILTDKAIENAMVVHAAFGGSTNLLLHIPAIAHA 316 (640)
T ss_pred HHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHHHccccCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCc-ChHHHHHhhcCCCceeeccCCCh--hhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCC--
Q 014009 159 VGLEL-SIDEFQKVSDEVPFLADLKPSGK--YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHL-- 233 (432)
Q Consensus 159 agi~l-~l~dfd~is~~~P~l~~~~P~G~--~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~-- 233 (432)
+||++ ||||||+||++||+|++++|||+ |+|+|||+|||+|+|||+|.+.|+||+|++|||||||+|||++++..
T Consensus 317 aGi~l~tlddfd~is~~vP~L~~l~P~G~~~~~~~d~~~AGGvpaVmk~L~~~GlL~~d~~TVtG~TL~e~l~~~~~~~~ 396 (640)
T TIGR03432 317 AGCRRPTVDDWTRINRKVPRLVDALPNGPVGHPTVRVFLAGGVPEVMLHLRRAGLLHEDVLTVTGETLGENLDWWENSER 396 (640)
T ss_pred cCCCCCCHHHHHHHhcccCceEEeccCCCCCccHHHHHHccCHHHHHHHHHHCCCcCCCCCCcCCcCHHHHHhhcccccc
Confidence 99995 99999999999999999999999 99999999999999999999999999999999999999999987321
Q ss_pred -------------CCCCCccCCCCCCCCC--CCCEEEeeccCCCCCeEEccccCCC--------ceeeeeEEEeCCHHHH
Q 014009 234 -------------SEGQDIIRPLSNPIKK--TGHIQVLRGNLAPEGSVAKITGKEG--------LYFSGPALVFEGEESM 290 (432)
Q Consensus 234 -------------~~d~~VIr~~~~P~~~--~Ggl~vL~GNLAP~GAVvK~sa~~~--------~~~~GpA~VF~see~a 290 (432)
..+++||||+++|+.. +|||+||||||||+|||+|+|+++. .+|+|||||||||||+
T Consensus 397 ~~~~~~~~~~~~~~~~~~VI~~~~~p~~~g~~ggl~vL~GNLAP~GAViK~sav~~~~~~~~~~~~~~GpArVFdsee~a 476 (640)
T TIGR03432 397 RARMKQRLRERDGVDPDDVIMSPAQAKARGLTSTVTFPKGNLAPEGSVIKSTAIDPSVVDEDGVYRHTGPARVFSSEKSA 476 (640)
T ss_pred ccccccccccccCCCCCCeECchhcCCCcCCCcceEEEeccCCCCceEEEecccCchhcccccceEEEEeEEEECCHHHH
Confidence 1267999999999877 7999999999999999999999764 5799999999999999
Q ss_pred HHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEE
Q 014009 291 IAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGL 370 (432)
Q Consensus 291 ~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIal 370 (432)
++||++++|++ ||||||||||||| ||||||+.+|++|.++|+|++|||||||||||+|+|+|||||||||++|||||+
T Consensus 477 ~~AI~~g~I~~-GdVvVIRyeGPkG-~GMpEml~~t~al~g~glG~~VALITDGRFSG~S~G~~IGHVsPEAa~GGPIal 554 (640)
T TIGR03432 477 IAAIKHGKIEA-GDVLVLIGRGPSG-TGMEETYQVTSALKYLSFGKHVALITDARFSGVSTGACIGHVGPEALAGGPIGK 554 (640)
T ss_pred HHHHhCCCCCC-CcEEEEeCCCCCC-CCchhhhcchhhHhhcCCCCeEEEecccCcCCCCCCCEEEEEChhhhCCCcEEE
Confidence 99999999999 9999999999998 799999999999999999999999999999999999999999999999999999
Q ss_pred eecCCEEEEecCCCEEEEe----cC----------HHHHHHHHhc--CCCCCCCCChHHHHHHHHhCCCcc-cCcccC
Q 014009 371 IQNGDIINIDVQKRRIDVQ----LT----------DEEMEERRRK--WTPPPNKVNRGVLYKYIKNVQSAS-NGCVTD 431 (432)
Q Consensus 371 V~dGD~I~IDi~~~~l~l~----v~----------~eel~~R~~~--~~~~~~~~~~G~l~~Y~~~V~~A~-~GA~~~ 431 (432)
|||||+|+||+++|+|+-. ++ +++|++|+.+ |.|++..+.++-|+.|.+.|+... +||+.|
T Consensus 555 VrdGD~I~IDi~~r~l~g~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~l~~~~q~~~~~~~~g~~~d 632 (640)
T TIGR03432 555 VRDGDLIEIIIDRNTLEGTVNLVGTEDGNQLPEEGAAVLAARPLRPDLAPDPALPDDTRLWAALQQVSGGTWGGCVYD 632 (640)
T ss_pred EeCCCEEEEEcCCCeEEEEEEEEecccccCChHHHHHHHhcCCCCccCCCCCCCCcccHHHHHHHHhcCCcccccccc
Confidence 9999999999999997763 23 5678999876 999988899999999999999999 999986
No 12
>PRK08211 putative dehydratase; Provisional
Probab=100.00 E-value=3.8e-147 Score=1164.34 Aligned_cols=426 Identities=35% Similarity=0.561 Sum_probs=394.2
Q ss_pred ChHHHHhHH-hcCCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCC-CCCccchHhhH
Q 014009 1 MPGTIMAMG-RLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAG-ACGGMYTANTM 78 (432)
Q Consensus 1 vPG~lMaaa-r~niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~G-sC~~mgTANTM 78 (432)
+|||||||+ |+|||+||||||||+||+ +|++++ ++|+.+++|++|+||+|||.++|+++|||+| +|+||||||||
T Consensus 166 ~PGmLMAaa~~~niPsI~V~GGpml~G~-~g~~~~--~~~~~~~~~~~G~is~eel~~~e~~acps~GGsC~gmgTANTM 242 (655)
T PRK08211 166 LPAMMMALAGMHDLPTVLVPGGVTLPPT-DGEDAG--KVQTIGARFANGELSLQEAAEAGCRACASPGGGCQFLGTAATS 242 (655)
T ss_pred hHHHHHHHHHcCCCCEEEEeCCCCCCCC-CCCcch--HHHHHHHHHHcCCCCHHHHHHHHHhcCCCCCccccchhhHHHH
Confidence 699999999 669999999999999998 788776 4888888899999999999999999999999 99999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHH
Q 014009 79 ASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARS 158 (432)
Q Consensus 79 ~~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~e 158 (432)
||++|||||+||||+++||++++|+++|+++|++||+|+++|+|||||||++||+|||+++||+|||||++|||+|||+|
T Consensus 243 ~~laEALGlsLPGsa~iPA~~~~r~~~A~~aG~~iv~lv~~~i~prdIlT~~AfeNAi~v~~A~GGSTNavLHL~AIA~e 322 (655)
T PRK08211 243 QVVAEALGLALPHSALAPSGQPIWLEIARRSARAVLELEQKGITTRDILTDKAIENAMVVHAAFGGSTNLLLHIPAIAHA 322 (655)
T ss_pred HHHHHHHhCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHHHccccCccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCc-ChHHHHHhhcCCCceeeccCCCh--hhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCC--
Q 014009 159 VGLEL-SIDEFQKVSDEVPFLADLKPSGK--YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHL-- 233 (432)
Q Consensus 159 agi~l-~l~dfd~is~~~P~l~~~~P~G~--~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~-- 233 (432)
+||+| ||+|||+||++||+|++++|||+ |.|+|||+|||+|+|||+|.+.||||+|++|||||||+|||++++..
T Consensus 323 aGi~l~tlddfd~is~~vP~L~~l~P~G~~~~~~~dl~~AGGvpaVmkeL~~~GlL~~d~~TVtG~Tl~e~l~~~~~~~~ 402 (655)
T PRK08211 323 AGCRRPTVDDWTRINRRVPRLVSVLPNGPVYHPTVRAFLAGGVPEVMLHLRALGLLHEDAMTVTGETLGENLDWWEHSER 402 (655)
T ss_pred cCCCCCCHHHHHHHhccCCceeEecCCCCCCchHHHHHhcCCHHHHHHHHHhCCCcCCCCCCcCCCCHHHHHhhcccccc
Confidence 99999 69999999999999999999999 99999999999999999999999999999999999999999987421
Q ss_pred -------------CCCCCccCCCCCCCCC--CCCEEEeeccCCCCCeEEccccCCC--------ceeeeeEEEeCCHHHH
Q 014009 234 -------------SEGQDIIRPLSNPIKK--TGHIQVLRGNLAPEGSVAKITGKEG--------LYFSGPALVFEGEESM 290 (432)
Q Consensus 234 -------------~~d~~VIr~~~~P~~~--~Ggl~vL~GNLAP~GAVvK~sa~~~--------~~~~GpA~VF~see~a 290 (432)
..|++||||+++|+.+ +|||+||+|||||+|||+|+|+++. ++|+|||||||||||+
T Consensus 403 ~~~~~~~~~~~~~~~~~~VI~~~~~p~~~gl~ggl~vL~GNLAP~GAViK~sav~~~~~~~~~~~~~~GpArVF~seeda 482 (655)
T PRK08211 403 RARFRQRLREQDGIDPDDVIMPPAQAKARGLTSTVTFPVGNIAPEGSVIKSTAIDPSVIDEDGVYRHTGRARVFTSEKSA 482 (655)
T ss_pred ccccccccccccCCCCCCeEcchhcCCCcCCCCceEEEeccCCCCCeEEEecccCchhcccccceEEEEeEEEECCHHHH
Confidence 1368999999999888 8999999999999999999999764 5899999999999999
Q ss_pred HHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEE
Q 014009 291 IAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGL 370 (432)
Q Consensus 291 ~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIal 370 (432)
++||++++|++ ||||||||||||| |||||||++|++|.++|+|++|||||||||||+|+|+|||||||||++|||||+
T Consensus 483 ~~AI~~g~I~~-GdVvVIRyeGPkG-~GMpEml~~t~al~g~glG~~VALITDGRFSG~S~G~~IGHVsPEAa~GGPIAl 560 (655)
T PRK08211 483 IAAIKHGEIKA-GDILVLIGGGPSG-TGMEETYQITSALKHLSFGKHVSLITDARFSGVSTGACIGHVGPEALAGGPIGK 560 (655)
T ss_pred HHHHhCCCCCC-CcEEEEeCCCCCC-CCchhhhchhhhHhhcCCCCeEEEeccCCCCCCCCCCEEEEEChhhhcCCcEEE
Confidence 99999999999 9999999999998 699999999999999999999999999999999999999999999999999999
Q ss_pred eecCCEEEEecCCCEEEEecC----------HH----HHHHHHhc--CCC-CCCCCChHHHHHHHHhCCCcccCcccC
Q 014009 371 IQNGDIINIDVQKRRIDVQLT----------DE----EMEERRRK--WTP-PPNKVNRGVLYKYIKNVQSASNGCVTD 431 (432)
Q Consensus 371 V~dGD~I~IDi~~~~l~l~v~----------~e----el~~R~~~--~~~-~~~~~~~G~l~~Y~~~V~~A~~GA~~~ 431 (432)
|||||+|+||+++|+|+=.|+ .| +|++|..+ ..| +.-+..+-+.+..++..+..+.||++|
T Consensus 561 VrdGD~I~IDi~~r~l~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~ 638 (655)
T PRK08211 561 LRDGDLIEIIIDRRTLEGSVNFIGTRDDELTPEEGARILAARPPHPDLAPDPELPDDTRLWAALQSVSGGTWGGCVYD 638 (655)
T ss_pred EeCCCEEEEECCCCEEeeeEEEEEecCcccCHHHHHHHHhcCCCCcccCCCCCCCCchHHHHHHHHhcCCccccceee
Confidence 999999999999999865433 33 45555433 111 111234677788888888999999986
No 13
>KOG2448 consensus Dihydroxy-acid dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-142 Score=1065.02 Aligned_cols=432 Identities=78% Similarity=1.267 Sum_probs=423.7
Q ss_pred ChHHHHhHHhcCCcEEEEcCCCCCCCccC---CeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhh
Q 014009 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQ---GHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANT 77 (432)
Q Consensus 1 vPG~lMaaar~niPsi~v~gGpm~~G~~~---g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANT 77 (432)
+||.+||+.|+|.|+|+||||++.||++. .+.+||.+.|+..|.|-+|+||+|+.+.+-.++||++|+|++||||||
T Consensus 161 mpg~~mamgr~nrpsimvyggti~pgh~~c~~~~~idivsafqsygefisg~i~ee~r~dv~~hacpg~gacggmytant 240 (596)
T KOG2448|consen 161 MPGTIMAMGRLNRPSIMVYGGTIKPGHFQCKTYKIIDIVSAFQSYGEFISGSISEEQRKDVLHHACPGAGACGGMYTANT 240 (596)
T ss_pred CccceehhcccCCCceEEecccccCCCCcccccchhHHHHHHHhhhhhhccccCchHhhhhHhhcCCCCCcccceeehhh
Confidence 69999999999999999999999999874 455789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHH
Q 014009 78 MASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIAR 157 (432)
Q Consensus 78 M~~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~ 157 (432)
|+..+|+|||+||+|+++||.+++|++.|+.+|+.|.++++.||+||||+|++|||||++..||+|||||+||||+||||
T Consensus 241 masaaeamgmtlp~sss~pa~speklaec~~ag~yik~ll~~dikprdi~t~~afenamv~vmalggstnavlhliaia~ 320 (596)
T KOG2448|consen 241 MASAAEAMGMTLPYSSSIPAESPEKLAECRLAGKYIKELLKMDIKPRDIITPKAFENAMVSVMALGGSTNAVLHLIAIAR 320 (596)
T ss_pred HHHHHHHhcCCCCCcccCcCCChHHHHHHHHHHHHHHHHHHcCCChhhccCHHHHhhhhhheeeccCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCC
Q 014009 158 SVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQ 237 (432)
Q Consensus 158 eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~ 237 (432)
.+|++|++|||+++|..||+|++++|+|+|.|+|||..||+|+|+|.|++.||+|+||+||||+||+|||+.++.....|
T Consensus 321 svg~~ltlddfq~vsd~tpfiad~kpsgkyvmedl~~iggtpsvlkyl~e~gl~dg~~mtvtg~tlaenl~~~psl~egq 400 (596)
T KOG2448|consen 321 SVGLELTLDDFQKVSDATPFIADLKPSGKYVMEDLHKIGGTPSVLKYLLELGLMDGDCMTVTGQTLAENLENVPSLTEGQ 400 (596)
T ss_pred hcCceecHHHHhhhccCCcceeccCCcchhHHHHHHHhcCcHHHHHHHHHcCCccCCeeEEecHHHHHHhhcCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred CccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCCCceeeeeEEEeCCHHHHHHHHhCCCCCC-CCcEEEEeCCCCCCC
Q 014009 238 DIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSF-KGKVVVIRGEGPKGG 316 (432)
Q Consensus 238 ~VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~~~~~~GpA~VF~see~a~~ai~~g~i~~-~gdVvViRyeGPkGg 316 (432)
+||||++||++.+|+|+||+|+|||+|+|.|+++++...|+|||||||.|+++++|+..+++++ ++.|||||||||||+
T Consensus 401 eiirplsnpik~~ghlqilrgslap~gsvakitgkeglyf~g~arvfe~e~~fiaalerge~kkgektvvvir~egpkgg 480 (596)
T KOG2448|consen 401 EIIRPLSNPIKETGHLQILRGSLAPDGSVAKITGKEGLYFSGPARVFEGEESFIAALERGEPKKGEKTVVVIRGEGPKGG 480 (596)
T ss_pred hhhhcccCcccccceEEEEecccCCCCceeeeeccccceeccceeeeccchHHHHHHhccCcccCceeEEEEEccCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988 256999999999999
Q ss_pred CCCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHH
Q 014009 317 PGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEME 396 (432)
Q Consensus 317 PGMpEml~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~ 396 (432)
|||||||+|++||+|.|||++|||+|||||||+|+|+.||||+|||++||||+||||||+|+||+.+++||+.||++|++
T Consensus 481 pgmpemlkpssaimgaglgkdvalltdgrfsggshgflighi~peaqeggpiglv~dgd~i~ida~kn~idl~vs~kema 560 (596)
T KOG2448|consen 481 PGMPEMLKPSSAIMGAGLGKDVALLTDGRFSGGSHGFLIGHICPEAQEGGPIGLVKDGDIITIDAGKNRIDLQVSPKEMA 560 (596)
T ss_pred CCCccccCcchhhhccccccceeEeecCcccCCccceeeeeccchhhcCCceEEeecCCEEEEecCCceeeeeeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCChHHHHHHHHhCCCcccCcccCC
Q 014009 397 ERRRKWTPPPNKVNRGVLYKYIKNVQSASNGCVTDE 432 (432)
Q Consensus 397 ~R~~~~~~~~~~~~~G~l~~Y~~~V~~A~~GA~~~~ 432 (432)
+||+.|+.|+.+|.||.|.+|+++|++|++|||+|+
T Consensus 561 ~rr~~w~app~ky~rgtl~kyaknvs~as~gcvtd~ 596 (596)
T KOG2448|consen 561 DRRKKWTAPPYKYNRGTLYKYAKNVSSASDGCVTDE 596 (596)
T ss_pred hhhccccCCCccccchhHHHHHHhhcccccCcccCC
Confidence 999999999999999999999999999999999985
No 14
>PRK09372 ribonuclease activity regulator protein RraA; Provisional
Probab=89.55 E-value=2.7 Score=39.17 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=60.8
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
++-||| +++.+.....++|+ ..++ |||+||-..|..-.-=+=|++.. +.+.+|+ .++|+||..-=.
T Consensus 31 ~~~G~A~TV~~~~d~~~~~~~i~--~~~~-GdVlVid~~g~~~~a~~G~~~~~--~a~~~G~---~G~VidG~vRD~~~i 102 (159)
T PRK09372 31 SFGGPITTVKCFEDNGLVKELLE--EPGE-GRVLVVDGGGSLRRALVGDNLAE--LAVDNGW---EGIVVYGCVRDVDEL 102 (159)
T ss_pred EEEEEEEEEEEeCCcHHHHHHHh--cCCC-CeEEEEECCCCcCcEeehHHHHH--HHHHcCC---eEEEecccccCHHHH
Confidence 455665 45555566677776 4588 99999998775433334455443 3455665 678999864221
Q ss_pred -CCCcce--EEecc-------cccCCCCeE----EeecCCEEEEecC
Q 014009 350 -SHGFVV--GHVCP-------EAQDGGPIG----LIQNGDIINIDVQ 382 (432)
Q Consensus 350 -s~G~~i--gHVsP-------EAa~GGpIa----lV~dGD~I~IDi~ 382 (432)
.-|+.| -.++| ....+-||. .|+.||.|.=|.+
T Consensus 103 ~~~~~Pvfa~g~~p~~~~~~~~~~~n~pV~iggv~V~PGD~I~aD~d 149 (159)
T PRK09372 103 AELDIGIQALAAIPVKSDKEGIGERDVPVNFGGVTFFPGDYLYADND 149 (159)
T ss_pred hhCCCCeEEeeecCCCCCCCCccEecccEEECCEEECCCCEEEEcCC
Confidence 112222 33444 233456776 8999999999955
No 15
>PRK08296 hypothetical protein; Provisional
Probab=88.22 E-value=1.3 Score=49.12 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=58.5
Q ss_pred CCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC-
Q 014009 273 EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG- 349 (432)
Q Consensus 273 ~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa- 349 (432)
..-..+|+++|-.+.+++. ++++ |+|+|.+.--|. + +..+ .+-.++||+ |..|=+
T Consensus 506 s~G~v~G~vrvv~~~~~~~------~~~~-g~ILV~~~tdP~-------~---~~~~-----~~~~GiVte~Gg~~SHaA 563 (603)
T PRK08296 506 SPGVVEGPARVIRSADELS------EVQE-GEILVCPVTSPS-------W---APIF-----AKIKATVTDIGGVMSHAA 563 (603)
T ss_pred CCCeEEEEEEEeCCHHHHH------hccC-ceEEEeCCCCHH-------H---HHHH-----HHheEEEEecCCCcchHH
Confidence 3445799999999988862 4678 999998877665 1 1112 123456776 333322
Q ss_pred ----CCCcc-eEEecccccCCCCeEEeecCCEEEEecCCCEEEEe
Q 014009 350 ----SHGFV-VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQ 389 (432)
Q Consensus 350 ----s~G~~-igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~ 389 (432)
+.|++ |..+ ++....++|||.|+||..+|.+.++
T Consensus 564 IvARe~GIPaVvgv------~~at~~l~dG~~V~vDg~~G~V~il 602 (603)
T PRK08296 564 IVCREYGLPAVVGT------GNATKRIKTGQRLRVDGTKGVVTIL 602 (603)
T ss_pred HHHHHcCCCEEEcC------ccHhhhcCCCCEEEEECCCCEEEEc
Confidence 22333 3222 3456789999999999999999874
No 16
>PRK12487 ribonuclease activity regulator protein RraA; Reviewed
Probab=85.71 E-value=5.8 Score=37.21 Aligned_cols=102 Identities=17% Similarity=0.261 Sum_probs=62.1
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
++-||| +++++.....++++. ..+ |||+||-..|.....=+=|++... .+.+|+ .++|+||..-=.
T Consensus 31 ~~~G~A~TV~~~~d~~~~~~al~~--~~~-GdVlVid~~g~~~~a~~G~~~a~~--a~~~G~---aG~VidG~vRD~~~i 102 (163)
T PRK12487 31 IFWGEIVTVRCFEDNSKVKEVLAQ--DGK-GKVLVVDGGGSCRRALLGDQIAQS--ALDNGW---EGIVINGCVRDVGAL 102 (163)
T ss_pred EEEEEEEEEEeeCCcHHHHHHHhc--CCC-CeEEEEECCCCCCcEeehHHHHHH--HHHCCC---eEEEEeecccCHHHH
Confidence 455654 455666666677665 488 999999887765444555655443 345564 678999864211
Q ss_pred -CCCcc--eEEeccc-------ccCCCCe----EEeecCCEEEEecCCCEE
Q 014009 350 -SHGFV--VGHVCPE-------AQDGGPI----GLIQNGDIINIDVQKRRI 386 (432)
Q Consensus 350 -s~G~~--igHVsPE-------Aa~GGpI----alV~dGD~I~IDi~~~~l 386 (432)
.-|+. .-.++|= ...+.|| ..|+.||+|.-|-+ +-+
T Consensus 103 ~~l~fPVfa~g~~p~~~~~~~~~~~nvPV~iggv~V~PGDiI~aD~d-GVv 152 (163)
T PRK12487 103 STMDLGVKALGASPIKTEKRGQGEVNVTLTMGNVIIEPGDMLYADEN-GIA 152 (163)
T ss_pred hhCCCCeEEeecCCCCCCCCCcceecccEEECCEEECCCCEEEEcCC-CEE
Confidence 11111 1222331 2346677 58999999999954 544
No 17
>TIGR01935 NOT-MenG RraA famliy. This model was initially classified as a "hypothetical equivalog" expressing the tentative hypothesis that all members might have the same function as the E. coli enzyme. Considering the second clade of enterobacterial sequences within this family, that appears to be less tenable. The function of these sequences outside of the narrow RraA equivalog model (TIGR02998) remains obscure. All of these were initially annotated as MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error in the case of the E. coli protein.
Probab=84.36 E-value=4.4 Score=37.40 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=57.3
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
++-||| +++.+.....++|+ ...+ |||+||-..|..-.-=+=|++.. +.+.+|+ .++|+||+.-=.
T Consensus 27 ~i~G~A~TV~~~~d~~~~~~ai~--~~~~-GdVlVid~~g~~~~a~~G~~~~~--~a~~~G~---~G~VidG~vRD~~~i 98 (150)
T TIGR01935 27 AFAGPIVTVKCFEDNSLVREVLE--QPGA-GRVLVVDGGGSLRCALLGDNLAV--LAEENGW---EGVIVNGCVRDVAEL 98 (150)
T ss_pred EEEEEEEEEEEECCcHHHHHHHh--cCCC-CeEEEEECCCCCceEeehHHHHH--HHHHCCC---EEEEEeecccCHHHH
Confidence 455554 45556566677776 4588 99999997765432233344433 3455665 778999864211
Q ss_pred -CCCcce--EEeccc-------ccCCCCeE----EeecCCEEEEecC
Q 014009 350 -SHGFVV--GHVCPE-------AQDGGPIG----LIQNGDIINIDVQ 382 (432)
Q Consensus 350 -s~G~~i--gHVsPE-------Aa~GGpIa----lV~dGD~I~IDi~ 382 (432)
.-|+.| ..++|- ...+-||. .|+.||.|.-|-+
T Consensus 99 ~~~~~Pvfa~g~~p~~~~~~~~~~~nvPV~igGv~V~PGD~IvaD~d 145 (150)
T TIGR01935 99 AGMDLGVKALAAHPRKTEKRGAGEVDVPVTFAGVTFVPGDYLYADED 145 (150)
T ss_pred hhCCCCEEEeeecCCCCCCCcceEecceEEECCEEECCCCEEEEcCC
Confidence 111111 222222 12344665 8999999998865
No 18
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=81.78 E-value=1.4 Score=50.73 Aligned_cols=90 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC
Q 014009 272 KEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG 349 (432)
Q Consensus 272 ~~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa 349 (432)
...-..+|+++|-.+.++. ++.+ |+|+|+++-=|.- +..+.. --++||+ |..|=+
T Consensus 773 ~~~G~v~G~v~v~~~~~~~-------~~~~-g~ILV~~~~~p~~----------~~~~~~-----~~giv~~~Gg~~sH~ 829 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA-------DLEK-GDILVTAFTDPGW----------TPLFVS-----IKGLVTEVGGLMTHG 829 (871)
T ss_pred cCCCeEEEEEEEECCHHHc-------CCCC-CeEEEecCCCHHH----------HHHHHh-----ceEEEEcCCCcchHH
Confidence 3445679999999998873 6788 9999999987731 111111 1455666 222221
Q ss_pred -----CCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEe
Q 014009 350 -----SHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQ 389 (432)
Q Consensus 350 -----s~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~ 389 (432)
..|++..=- .++..-.++|||.|+||..+++|.++
T Consensus 830 aIvare~gIPavv~-----~~~~~~~l~~G~~v~lDg~~G~v~il 869 (871)
T PRK06241 830 AVIAREYGIPAVVG-----VENATKLIKDGQRIRVDGTEGYVEIL 869 (871)
T ss_pred HHHHHhcCCCEEEc-----cccHHhhcCCCCEEEEECCCCEEEEc
Confidence 223332111 13346789999999999999999874
No 19
>TIGR02798 ligK_PcmE 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase. Members of this protein family 4-carboxy-4-hydroxy-2-oxoadipate aldolase, also called 4-oxalocitramalate aldolase. This enzyme of the protocatechuate 4,5-cleavage pathway converts its substrate to pyruvate plus oxaloacetate. Protocatechuate is an intermediate in many pathways for degrading aromatic compounds, including lignin, fluorene, etc. Hara, et al. showed the LigK gene was not only a 4-carboxy-4-hydroxy-2-oxoadipate aldolase but also the enzyme of the following step, oxaloacetate decarboxylase.
Probab=78.10 E-value=14 Score=36.18 Aligned_cols=103 Identities=20% Similarity=0.236 Sum_probs=58.2
Q ss_pred eeeeE---EEeC-CHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 277 FSGPA---LVFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 277 ~~GpA---~VF~-see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
+-||| +++. +.....++|+ ...+ |||+||-..|..-.-=+-|++. .+.+.+|+ .++|+||..-=.
T Consensus 49 i~G~A~TV~~~~~d~~~~~~ai~--~~~p-GdVlVid~~g~~~~a~~G~~~a--~~a~~~G~---~GiVidG~vRD~~~i 120 (222)
T TIGR02798 49 VCGTAVTVLLQPGDNWMMHVAAE--QIQE-GDVVVAACTAECEDGYFGDLLA--TSFQARGC---RGLIIDAGVRDVRDL 120 (222)
T ss_pred EEEEEEEEEeecCCchHHHHHHH--hCCC-CeEEEEECCCCcceEeehHHHH--HHHHHCCC---eEEEEecccCCHHHH
Confidence 45554 3342 2233556666 4588 9999999777642212234433 34455675 778999864210
Q ss_pred -CCCcce--EEecc-------cccCCCCe----EEeecCCEEEEecCCCEEEE
Q 014009 350 -SHGFVV--GHVCP-------EAQDGGPI----GLIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 350 -s~G~~i--gHVsP-------EAa~GGpI----alV~dGD~I~IDi~~~~l~l 388 (432)
.-|+.| -.++| -...+.|| ..|+.||.|.=|- ++-+-+
T Consensus 121 ~~l~~Pvfa~g~~p~~~~~~~~~~~nvpv~iggv~V~PGD~i~aD~-dGVvvi 172 (222)
T TIGR02798 121 TEMNFPVWSKAIHAKGTVKATLGSVNIPVVCANALVNPGDVVVADD-DGVVVV 172 (222)
T ss_pred hhCCCceEEeecCCCCCCCCCccccCCCEEECCEEECCCCEEEEcC-CcEEEE
Confidence 012221 22222 12456777 5899999999994 465543
No 20
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=69.16 E-value=22 Score=40.77 Aligned_cols=103 Identities=16% Similarity=0.155 Sum_probs=63.6
Q ss_pred CceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC--
Q 014009 274 GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG-- 349 (432)
Q Consensus 274 ~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa-- 349 (432)
.-..+||++|-.+.+|+. ++.+ |+|+|.+.--|. + +..+. +-.++||+ |+.|=+
T Consensus 362 ~G~~~G~v~v~~~~~d~~------~~~~-g~ILV~~~~~p~-------~---~~~l~-----~~~giVte~Gg~tSH~Ai 419 (782)
T TIGR01418 362 PGIASGKVKVIFDLKEMD------KFEE-GDILVTDMTDPD-------W---EPAMK-----RASAIVTNEGGMTCHAAI 419 (782)
T ss_pred CCceEEEEEEeCCHHHHH------hcCC-CeEEEECCCCHH-------H---HHHhH-----hheEEEEcCCCCccHHHH
Confidence 445699999999998862 5677 999999887774 1 11121 23567776 222211
Q ss_pred ---CCCcceEEecccccCCCCeEEeecCCEEEEecCC---CEEEEecCHHHHHHHHhcCCC
Q 014009 350 ---SHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQK---RRIDVQLTDEEMEERRRKWTP 404 (432)
Q Consensus 350 ---s~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~---~~l~l~v~~eel~~R~~~~~~ 404 (432)
+.|++..= -.++..-.+++||.|+||..+ +.+-..-.+.+. .++..|..
T Consensus 420 vAR~lgIPavv-----g~~~~~~~l~~G~~v~vDg~~~~~G~v~~~~~~~~~-~~~~~~~~ 474 (782)
T TIGR01418 420 VARELGIPAVV-----GTGDATKTLKDGMEVTVDCAEGDTGYVYAGKLEHEV-KEVELSNM 474 (782)
T ss_pred HHHhcCCCEEE-----cccchhhcccCCCEEEEEcCCCCCcEEEeCCcHHHH-HHHhhccC
Confidence 12222110 023456789999999999999 999876554332 33444543
No 21
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=66.74 E-value=6.6 Score=31.68 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=38.8
Q ss_pred cchHhhHHHHHHHhcC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCC-----ccccccHHHHHHHHH
Q 014009 72 MYTANTMASAIEAMGM-SLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLK-----PRDIITKKSLRNAMV 137 (432)
Q Consensus 72 mgTANTM~~l~EaLGl-~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~-----prdIlT~~af~NAi~ 137 (432)
.++..|+..++|.+|+ .| .++.-..+|..+=-||-+++++-.+ -|.-||-+-|++|++
T Consensus 3 ~~~~esvk~iAes~Gi~~l--------~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGISNL--------SDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT---B---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 5678899999999999 33 3556667888888888888765432 378899999999975
No 22
>PRK03955 hypothetical protein; Reviewed
Probab=64.48 E-value=12 Score=33.95 Aligned_cols=38 Identities=16% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEe
Q 014009 350 SHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQ 389 (432)
Q Consensus 350 s~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~ 389 (432)
++|..+..+- +.++=+...++|||+|++|-+++++.++
T Consensus 92 s~GaIvAgIP--~V~~~~~~~l~~G~~V~Vdg~~G~V~i~ 129 (131)
T PRK03955 92 ATGAIISGIP--LVDKVDISKLKDGDRVVVDGDEGEVEIL 129 (131)
T ss_pred EeeeeecCCc--eEccccceecCCCCEEEEeCCCCEEEEc
Confidence 5555555431 2334448899999999999999999874
No 23
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=64.47 E-value=1.1e+02 Score=29.96 Aligned_cols=52 Identities=13% Similarity=0.390 Sum_probs=38.6
Q ss_pred CCchhhhHHHHHHHhCCC-------cChHHHHHhhcC--CCceeeccCCCh-hhHHHHHhcC
Q 014009 145 STNAVLHLIAIARSVGLE-------LSIDEFQKVSDE--VPFLADLKPSGK-YVMEDVHKIG 196 (432)
Q Consensus 145 STN~vlHL~AIA~eagi~-------l~l~dfd~is~~--~P~l~~~~P~G~-~~~~dl~~AG 196 (432)
++-..+.-...+.++|-| .+.++|.++.+. .|++.+..|+++ .+.++|.+.|
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG 219 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELG 219 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCC
Confidence 455555566666778766 267889999986 688888888876 6788888776
No 24
>PRK05865 hypothetical protein; Provisional
Probab=64.05 E-value=12 Score=43.44 Aligned_cols=88 Identities=23% Similarity=0.334 Sum_probs=55.2
Q ss_pred CCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC-
Q 014009 273 EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG- 349 (432)
Q Consensus 273 ~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa- 349 (432)
..-..+|+++|-+. ++. .++++ |+|+|.++--|. .+..+. +--++||+ |..|=+
T Consensus 742 s~G~v~G~vrvv~~-~~~------~~~~~-g~ILVa~~tdp~----------~~~~~~-----~a~giVte~Gg~~SH~A 798 (854)
T PRK05865 742 CGGRVRGRVRIVRP-ETI------DDLQP-GEILVAEVTDVG----------YTAAFC-----YAAAVVTELGGPMSHAA 798 (854)
T ss_pred cCCccEEEEEEecH-HHh------hhcCC-CeEEEeCCCCHH----------HHHHHH-----HheEEEeccCCCccHHH
Confidence 34457999999873 332 35788 999999986554 122221 23456776 222221
Q ss_pred ----CCCcc-eEEecccccCCCCeEEeecCCEEEEecCCCEEEEe
Q 014009 350 ----SHGFV-VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQ 389 (432)
Q Consensus 350 ----s~G~~-igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~ 389 (432)
+.|++ |-.+ .+..-.++|||.|+||-.+++|.++
T Consensus 799 IvARe~gIPaVvgv------~~at~~l~dG~~V~vDg~~G~V~~l 837 (854)
T PRK05865 799 VVAREFGFPCVVDA------QGATRFLPPGALVEVDGATGEIHVV 837 (854)
T ss_pred HHHHHcCCCEEEcc------ccHhhcCCCCCEEEEECCCcEEEEe
Confidence 12322 2222 2345679999999999999999985
No 25
>PRK09262 hypothetical protein; Provisional
Probab=63.26 E-value=25 Score=34.47 Aligned_cols=90 Identities=20% Similarity=0.271 Sum_probs=53.6
Q ss_pred HHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCC-----------CCCCCcce-E
Q 014009 289 SMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS-----------GGSHGFVV-G 356 (432)
Q Consensus 289 ~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfS-----------Gas~G~~i-g 356 (432)
-.+++|+ .+.+ ||||||-..|+.-.-=+=|+++ .+.+.+|+ .++|+||..- =.++|++. +
T Consensus 67 ~~~~ai~--~~~p-GdVlVid~~g~~~~a~~Ge~~a--~~a~~~G~---~GiVidG~vRD~~~i~~l~~Pvfa~g~~p~~ 138 (225)
T PRK09262 67 MMHVAVE--QCQP-GDVLVVAPTSPCTDGFFGDLLA--TSLQARGV---RGLVIDAGVRDVRTLTEMGFPVWSRAISAQG 138 (225)
T ss_pred HHHHHHH--ccCC-CCEEEEECCCCCceeeehHHHH--HHHHHCCC---eEEEEeceeCCHHHHhhCCCceEEeecCCCC
Confidence 3455666 4578 9999999877753222334443 34456675 6789998631 11223221 2
Q ss_pred --EecccccCCCCeE----EeecCCEEEEecCCCEEEE
Q 014009 357 --HVCPEAQDGGPIG----LIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 357 --HVsPEAa~GGpIa----lV~dGD~I~IDi~~~~l~l 388 (432)
|..|. ..+-||. .|+.||.|.=|-+ +-+-+
T Consensus 139 ~~~~~~~-~~nvpV~iggv~V~PGD~IvaD~d-GVvvI 174 (225)
T PRK09262 139 TVKATLG-SVNVPVVCAGALVNPGDVVVADDD-GVVVV 174 (225)
T ss_pred CCCCCcc-eecccEEECCEEECCCCEEEEECC-cEEEE
Confidence 22233 3456664 7999999999954 65543
No 26
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.85 E-value=7.7 Score=33.72 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=23.9
Q ss_pred EEeecCCEEEEecCCCEEEEecCHHHHHHHHhcC
Q 014009 369 GLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKW 402 (432)
Q Consensus 369 alV~dGD~I~IDi~~~~l~l~v~~eel~~R~~~~ 402 (432)
..++|||+|+|=-+ |..|+.|+.+||+.-
T Consensus 63 ~~l~dgDRVEIyRP-----LlaDPKE~RR~Ra~~ 91 (99)
T COG2914 63 DELHDGDRVEIYRP-----LLADPKEARRKRAER 91 (99)
T ss_pred ccccCCCEEEEecc-----cccChHHHHHHHHHH
Confidence 45999999999765 678999999888753
No 27
>TIGR02998 RraA_entero regulator of ribonuclease activity A. THIS PROTEIN IS _NOT_ MenG, AKA S-adenosylmethionine: 2-demethylmenaquinone methyltransferase (EC 2.1.-.-). See the references characterizing this as a case of transitive annotation error .
Probab=60.86 E-value=18 Score=33.95 Aligned_cols=100 Identities=17% Similarity=0.196 Sum_probs=59.8
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
+|-||| ++|++.....++|+. ..+ |||+||-..|....-=+=|+++. +.+.+|+ .++|+||..-=.
T Consensus 31 ~~~G~A~TV~~~~d~~~~~~aid~--~~p-GdVlVid~~g~~~~A~~G~~la~--~a~~~G~---aGvVidG~vRD~~~i 102 (161)
T TIGR02998 31 SFGGKVVTVKCFEHNGLINELLEQ--NGT-GRVLVIDGGGSTRRALIDAELAQ--LAANNGW---EGIVVYGAVRQVDAL 102 (161)
T ss_pred EEEEEEEEEEeeCCcHHHHHHHhc--cCC-CeEEEEECCCCCceEeeCHHHHH--HHHHCCC---eEEEEeecccCHHHH
Confidence 355554 566766677777775 488 99999998888744445566543 3345675 678888853110
Q ss_pred -CCCcce--EEeccc-------ccCCCCeE----EeecCCEEEEecCC
Q 014009 350 -SHGFVV--GHVCPE-------AQDGGPIG----LIQNGDIINIDVQK 383 (432)
Q Consensus 350 -s~G~~i--gHVsPE-------Aa~GGpIa----lV~dGD~I~IDi~~ 383 (432)
.-++.| -..+|= ...+-||. .|+.||.|.=|.+.
T Consensus 103 ~~l~~PVfa~g~~p~~~~~~~~g~~nvpV~iggv~V~PGD~IvaD~DG 150 (161)
T TIGR02998 103 EELDIGIQALAAIPVGADEQGIGESDIAVNFAGVTFFPDDYIYADNTG 150 (161)
T ss_pred hhCCCCcEEeeccCCCCCCCCcceeCCCEEECCEEECCCCEEEEcCCc
Confidence 111111 111111 12344554 59999999999764
No 28
>PRK08245 hypothetical protein; Validated
Probab=58.50 E-value=25 Score=34.58 Aligned_cols=89 Identities=24% Similarity=0.274 Sum_probs=53.5
Q ss_pred HHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCC-----------CCCCCcce---
Q 014009 290 MIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS-----------GGSHGFVV--- 355 (432)
Q Consensus 290 a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfS-----------Gas~G~~i--- 355 (432)
.+++|+. ..+ |||+||-..|..-.-=+=|++. .+.+.+|+ .++|+||..- =.++|++.
T Consensus 78 ~~~aid~--~~~-GdVlVid~~g~~~~a~~G~~~~--~~a~~~G~---~G~VidG~vRD~~ei~~~gfPvfarg~~p~~~ 149 (240)
T PRK08245 78 QRAAIET--CPP-GCVLVVDARGDARAGSFGDILC--TRLKKRGV---AGLVTDGGVRDSPGIAALGLPVWCAGPSAPTN 149 (240)
T ss_pred HHHHHhc--cCC-CeEEEEECCCCCCccccHHHHH--HHHHHCCC---eEEEEeeccCCHHHHhhCCCceEecccCCCCC
Confidence 5567765 688 9999999888653222334443 34556675 7789998631 11333322
Q ss_pred -EEecccccCCCCe----EEeecCCEEEEecCCCEEEE
Q 014009 356 -GHVCPEAQDGGPI----GLIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 356 -gHVsPEAa~GGpI----alV~dGD~I~IDi~~~~l~l 388 (432)
++..|. ..+.|| ..|+.||.|.=| .++-+-+
T Consensus 150 ~~~~~~~-~~nvPV~igGv~V~PGD~I~aD-~dGVvvI 185 (240)
T PRK08245 150 LTGLTAV-DINVPIGCGGVAVFPGDIIVAD-DDGVVVI 185 (240)
T ss_pred CCCCceE-eecCCEEECCEEEcCCCEEEEc-CCceEEE
Confidence 123332 334455 469999999999 4565544
No 29
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=57.48 E-value=41 Score=38.83 Aligned_cols=91 Identities=19% Similarity=0.212 Sum_probs=59.4
Q ss_pred ceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC---
Q 014009 275 LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG--- 349 (432)
Q Consensus 275 ~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa--- 349 (432)
-..+||++|..+.+++. ++++ |+|+|.+.-.|. ++ ..+ .+-.++||+ |+.|=+
T Consensus 365 G~~~G~v~v~~~~~~~~------~~~~-g~ILV~~~~~p~-------~~---~~l-----~~~~givt~~Gg~tSH~Ail 422 (795)
T PRK06464 365 GIGSGKVRVILDISEMD------KVQP-GDVLVTDMTDPD-------WE---PVM-----KRASAIVTNRGGRTCHAAII 422 (795)
T ss_pred CceeeEEEEeCCHHHHH------hcCC-CeEEEECCCCHH-------HH---HHH-----HhheEEEEcCCCCcchHHHH
Confidence 34699999999988873 5678 999999887774 21 112 134566776 222221
Q ss_pred --CCCcc-eEEecccccCCCCeEEeecCCEEEE---ecCCCEEEEecCHH
Q 014009 350 --SHGFV-VGHVCPEAQDGGPIGLIQNGDIINI---DVQKRRIDVQLTDE 393 (432)
Q Consensus 350 --s~G~~-igHVsPEAa~GGpIalV~dGD~I~I---Di~~~~l~l~v~~e 393 (432)
+.|++ |..+ ++-.-.+++||.|+| |..++.+-..-++.
T Consensus 423 AR~lgIPavvg~------~~~~~~l~~G~~v~v~~~Dg~~G~v~~~~~~~ 466 (795)
T PRK06464 423 ARELGIPAVVGT------GNATEVLKDGQEVTVSCAEGDTGYVYEGLLEF 466 (795)
T ss_pred HHHcCCCEEEcc------CcccceecCCCEEEEEeccCCCcEEEeCCchh
Confidence 12222 3222 234567999999999 99999998765543
No 30
>PRK06201 hypothetical protein; Validated
Probab=56.74 E-value=42 Score=32.68 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCC-----------CCCCCCcceE
Q 014009 288 ESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRF-----------SGGSHGFVVG 356 (432)
Q Consensus 288 e~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRf-----------SGas~G~~ig 356 (432)
....++|+. +.+ ||||||-..|+...-=+=|++. .+.+.+|+ .++|+||.. -=.++|++.-
T Consensus 68 ~~~~~ai~~--~~p-G~VlVid~~g~~~~a~~G~~~a--~~a~~~G~---~G~VidG~vRD~~~i~~~~fPvfa~g~~p~ 139 (221)
T PRK06201 68 LMIHRALDL--ARP-GDVIVVDGGGDLTNALVGEIML--AIAARRGV---AGVVIDGAVRDVAALREMGFPVFARGVTHR 139 (221)
T ss_pred HHHHHHHhc--cCC-CcEEEEECCCCCCccchhHHHH--HHHHHCCC---eEEEEeeccCCHHHHhhCCCCeEEeccCCC
Confidence 445567764 678 9999998877763322334443 34456675 778999862 1113333221
Q ss_pred Eeccc--ccCCCCeE----EeecCCEEEEecCCCEEE
Q 014009 357 HVCPE--AQDGGPIG----LIQNGDIINIDVQKRRID 387 (432)
Q Consensus 357 HVsPE--Aa~GGpIa----lV~dGD~I~IDi~~~~l~ 387 (432)
+-..+ ...+.||. .|+.||.|.=|- ++-+-
T Consensus 140 ~~~~~~~~~~n~pV~igGv~V~PGD~I~aD~-dGVvv 175 (221)
T PRK06201 140 GPYKDGPGEINVPVAIGGMVIEPGDLIVGDD-DGLVA 175 (221)
T ss_pred CCCCCCccccCccEEECCEEEcCCCEEEEcC-CceEE
Confidence 11111 23466664 699999999994 45543
No 31
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=53.60 E-value=14 Score=28.95 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.4
Q ss_pred chhhhHHHHHHHhCCCcChHHHHHh
Q 014009 147 NAVLHLIAIARSVGLELSIDEFQKV 171 (432)
Q Consensus 147 N~vlHL~AIA~eagi~l~l~dfd~i 171 (432)
+..=.+++||+++|+++|.++|+..
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4466789999999999999999863
No 32
>PRK12764 hypothetical protein; Provisional
Probab=51.31 E-value=22 Score=38.76 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=54.9
Q ss_pred HHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCC--------CC---CCCcce-EE
Q 014009 290 MIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS--------GG---SHGFVV-GH 357 (432)
Q Consensus 290 a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfS--------Ga---s~G~~i-gH 357 (432)
.+++|+ .+++ ||||||-..|....-=+=|++.. +.+.+|+ .++|+||..- |. ++|++. +|
T Consensus 336 ~~~aid--~~~p-GdVlVId~~g~~~~a~~Gel~a~--~a~~~G~---~G~ViDG~vRD~~ei~~lg~PVfarg~~p~~~ 407 (500)
T PRK12764 336 QKRAFD--SVNP-GEVLVIEARGEKGTGTLGDILAL--RAQVRGA---AGVVTDGGVRDYAAVAELGLPVFFAGPHPAVL 407 (500)
T ss_pred HHHHHh--cCCC-CeEEEEECCCCCCeEchHHHHHH--HHHHCCC---eEEEEeecccCHHHHHhCCCCeEEeecCCCCC
Confidence 446664 4688 99999998887743334455543 3455675 7899999751 11 222221 11
Q ss_pred ---ecccccCCCCe----EEeecCCEEEEecCCCEEEE
Q 014009 358 ---VCPEAQDGGPI----GLIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 358 ---VsPEAa~GGpI----alV~dGD~I~IDi~~~~l~l 388 (432)
..| ...+.|| ..|+.||+|.=| .++-+-+
T Consensus 408 ~~~~~~-~~~nvpV~~gGv~V~PGDiIvaD-~dGVvvI 443 (500)
T PRK12764 408 GRRHVP-WDVDITVACGGATVQPGDVIVGD-DDGVVVI 443 (500)
T ss_pred CcCccc-ceeCCcEEECCEEEcCCCEEEEc-CCcEEEE
Confidence 012 2356677 579999999999 4555543
No 33
>PRK05849 hypothetical protein; Provisional
Probab=47.17 E-value=67 Score=37.20 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=52.9
Q ss_pred CceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC--
Q 014009 274 GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG-- 349 (432)
Q Consensus 274 ~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa-- 349 (432)
.-+.+|+++|-++.+ + ...+ |+|||+++--|- + +. |--.+ -.++||+ |..|=+
T Consensus 688 ~g~v~g~v~v~~~~~-------~-~~~~-G~Ilv~~~tdPg-------~---~~-lf~~~---i~g~Vte~Gg~~SH~AI 744 (783)
T PRK05849 688 QKRVEATVADLDNDN-------D-DDLE-GKIVCIENADPG-------Y---DW-LFTKG---IAGLITCYGGANSHMAI 744 (783)
T ss_pred CCEEEEEEEEecChh-------h-cCCC-CCEEEeCCCCcc-------c---hH-HHhhh---eeEEEEcCCCcccHHHH
Confidence 445899999988762 1 3347 999999998774 1 11 11111 2456776 222211
Q ss_pred ---CCCcc-eEEecccccCCCC-eEEeecCCEEEEecCCCEEEE
Q 014009 350 ---SHGFV-VGHVCPEAQDGGP-IGLIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 350 ---s~G~~-igHVsPEAa~GGp-IalV~dGD~I~IDi~~~~l~l 388 (432)
+.|++ |.- .|+- ...+++||.|+||..++++.+
T Consensus 745 ~ARe~gIPavvg------~~~~~~~~~~~g~~v~vDg~~G~v~i 782 (783)
T PRK05849 745 RAAELGLPAVIG------VGEELFEKWLKAKRILLDCASQRIEI 782 (783)
T ss_pred HHHHcCCCEEEc------cCcchhhhccCCCEEEEECCCCEEEe
Confidence 22332 111 2344 667999999999999999875
No 34
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=44.49 E-value=19 Score=26.60 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHhCCCcChHHH
Q 014009 107 RLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEF 168 (432)
Q Consensus 107 ~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~eagi~l~l~df 168 (432)
.+..++.++.++.+ .+|+.-+.. +...=.+++||++.|+++|.+||
T Consensus 3 ~~~l~~Fl~~~~~d---------~~l~~~l~~-------~~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 3 IESLKAFLEKVKSD---------PELREQLKA-------CQNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHHHHHhcC---------HHHHHHHHh-------cCCHHHHHHHHHHcCCCCCHHHh
Confidence 34455666666644 444444432 23445778999999999999887
No 35
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=44.28 E-value=33 Score=34.20 Aligned_cols=89 Identities=21% Similarity=0.303 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHhCCCcChHHHHHhhcCCCceeecc
Q 014009 103 LDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLK 182 (432)
Q Consensus 103 ~~~a~~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~eagi~l~l~dfd~is~~~P~l~~~~ 182 (432)
...||.+|..++.|+-..=--.-.|+-.=.-|.| .|+=|..=+++.+.++||=- .+++++.+++++.+|..+
T Consensus 98 ~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl---~AL~ga~i~vM~~~s~ARVT--k~~ve~Le~la~s~PvfA--- 169 (234)
T PF06833_consen 98 YALARLAGHPVIGLVYGKAMSGAFLAHGLQANRL---IALPGAMIHVMGKPSAARVT--KRPVEELEELAKSVPVFA--- 169 (234)
T ss_pred HHHHHHcCCCeEEEEecccccHHHHHHHHHhcch---hcCCCCeeecCChHHhHHHh--hcCHHHHHHHhhcCCCcC---
Confidence 4455555555555543221112222222223333 45558888888999988854 678899999999999875
Q ss_pred CCChhhHHHHHhcCChHHHHH
Q 014009 183 PSGKYVMEDVHKIGGTPAVIR 203 (432)
Q Consensus 183 P~G~~~~~dl~~AGGvpav~k 203 (432)
|.++.|++-|++..++.
T Consensus 170 ----~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 170 ----PGIENYAKLGALDELWD 186 (234)
T ss_pred ----CCHHHHHHhccHHHHhc
Confidence 56899999999988654
No 36
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=41.82 E-value=15 Score=28.65 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=26.6
Q ss_pred CCCeEEeecCCEEEEecCCCEEEEecCHH
Q 014009 365 GGPIGLIQNGDIINIDVQKRRIDVQLTDE 393 (432)
Q Consensus 365 GGpIalV~dGD~I~IDi~~~~l~l~v~~e 393 (432)
..+.-.|+.||.++-|....||++.+|++
T Consensus 23 ~~~~Rvi~Pg~~vTmDyr~dRLnv~~D~~ 51 (60)
T PF11720_consen 23 AETVRVIRPGDAVTMDYRPDRLNVEVDDD 51 (60)
T ss_pred ccceEEeCCCCcCcccCCCCcEEEEECCC
Confidence 67888999999999999999999999864
No 37
>TIGR02369 trimeth_pyl trimethylamine:corrinoid methyltransferase. This model represents a distinct subfamily of pfam06253. All members here are trimethylamine:corrinoid methyltransferases that contain a critical pyrrolysine residue incorporated during translation via a special tRNA for a TAG (amber) codon. Known members so far are from the genus Methanosarcina. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with dimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates trimethylamine, leaving dimethylamine, and methylates the prosthetic group of its small cognate corrinoid protein, MttC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.
Probab=35.28 E-value=2.1e+02 Score=31.55 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=73.0
Q ss_pred HHHhHHhcCCcEEEEc---CCCCCCCccCCeeccee-hHHHHHHHHhcCCCCHHHHHH--HHHhcCCCCCCCCccchHhh
Q 014009 4 TIMAMGRLNRPGIMVY---GGTIKPGHFQGHTYDIV-SAFQVYGEYVSGSISDEQRMN--VVLNSCPGAGACGGMYTANT 77 (432)
Q Consensus 4 ~lMaaar~niPsi~v~---gGpm~~G~~~g~~~~~~-~~~e~~g~~~~G~i~~eel~~--~e~~acp~~GsC~~mgTANT 77 (432)
.||..+|.|+|.++.+ +|-|.| +++. .+-+..- |-|-- +-+-..||+-.+-|-+|.|+
T Consensus 231 ~l~~~a~~gqpv~v~p~~laGAtaP-------vT~AGalaq~~A---------E~Lagivl~Qli~PGaPviyG~~~s~~ 294 (489)
T TIGR02369 231 VIIKGARFGMPVNVLSMAMSGGSSP-------VYLAGTLVTHNA---------EVLAGITLAQLTVPGAKVWYGSSTTTF 294 (489)
T ss_pred HHHHHHHcCCcEEecchhccCCCcc-------hhHHHHHHHHHH---------HHHHHHHHHHhcCCCCcEEeCCCccce
Confidence 4789999999999876 566665 2321 2222222 22322 33445565555555555544
Q ss_pred -HHHHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHH-----hhCCCCccccccH-HHHHHHHHHHHhcCCCCchhh
Q 014009 78 -MASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEL-----LRMDLKPRDIITK-KSLRNAMVIVMALGGSTNAVL 150 (432)
Q Consensus 78 -M~~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~l-----v~~~i~prdIlT~-~af~NAi~v~~A~GGSTN~vl 150 (432)
|. |++..-.+|+-..+...+|+-.-.+ .--+++-+++.+- ..+|.++...+|.=+..|.+.
T Consensus 295 dMr------------sGa~~~GtPE~~l~~~~~~QlAr~ygLP~rs~gg~tdsK~~D~QAg~E~~~sl~~a~laGaN~i~ 362 (489)
T TIGR02369 295 DLK------------KGTAPVGSPELGLISAAVAKLAQFYGLPAFVAGTOADAKIPDNQAGHEKTMTCFLPALAGANTIY 362 (489)
T ss_pred ecC------------CCCCCCCChHHHHHHHHHHHHHHHcCCCccccCCCcccCCcchHHHHHHHHHHHHHHhcCcccee
Confidence 43 4455555666655555554433222 2245677888875 468999999999888899988
Q ss_pred h
Q 014009 151 H 151 (432)
Q Consensus 151 H 151 (432)
|
T Consensus 363 ~ 363 (489)
T TIGR02369 363 G 363 (489)
T ss_pred c
Confidence 7
No 38
>KOG2776 consensus Metallopeptidase [General function prediction only]
Probab=32.86 E-value=28 Score=36.80 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=23.2
Q ss_pred ceEEecccccCCCCeEEeecCCEEEEecC
Q 014009 354 VVGHVCPEAQDGGPIGLIQNGDIINIDVQ 382 (432)
Q Consensus 354 ~igHVsPEAa~GGpIalV~dGD~I~IDi~ 382 (432)
|++|.||+.-+- =..+|+||++-||+-
T Consensus 88 cv~h~sPlksd~--~~~Lk~GDvVKIdLG 114 (398)
T KOG2776|consen 88 CVCHFSPLKSDA--DYTLKEGDVVKIDLG 114 (398)
T ss_pred eeeccCcCCCCC--cccccCCCEEEEEee
Confidence 889999998773 467899999999975
No 39
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=32.72 E-value=91 Score=33.52 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCc-cccccHHHHHHHHHHHHhcCCCCchhhhHHHHHHHhCCCcChHHHHHhhcCCCceeec
Q 014009 103 LDECRLAGKYLLELLRMDLKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADL 181 (432)
Q Consensus 103 ~~~a~~ag~~iv~lv~~~i~p-rdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA~eagi~l~l~dfd~is~~~P~l~~~ 181 (432)
...||+|+--||+|++++-.. |-| +++=.=||--+.--++||+|+| ..|| .+.+
T Consensus 44 Q~~AReAaGvIv~mik~gk~aGrgi------------Li~GppgTGKTAlA~gIa~eLG------------~dvP-F~~i 98 (450)
T COG1224 44 QEEAREAAGVIVKMIKQGKMAGRGI------------LIVGPPGTGKTALAMGIARELG------------EDVP-FVAI 98 (450)
T ss_pred hHHHHHhhhHHHHHHHhCcccccEE------------EEECCCCCcHHHHHHHHHHHhC------------CCCC-ceee
Q ss_pred cCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcCCCCCCCCCccCCCCCCCCCCCCEEEeeccCC
Q 014009 182 KPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLA 261 (432)
Q Consensus 182 ~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~~~~~~d~~VIr~~~~P~~~~Ggl~vL~GNLA 261 (432)
.-+--|..+ ..=..++++.|++ ++-|-=|-..|..+.-- -.--|+--.+|+++.+-.
T Consensus 99 sgsEiYS~E----~kKTE~L~qa~Rr-------aIGvrikE~reV~EGeV----~~l~i~~~~~p~~~y~~~-------- 155 (450)
T COG1224 99 SGSEIYSLE----VKKTEALTQALRR-------AIGVRIKETREVYEGEV----VELEIRRARNPLNPYGKV-------- 155 (450)
T ss_pred ccceeeeec----ccHHHHHHHHHHH-------hhceEeeeeeEEEEEEE----EEEEEeeccCCCCCcccc--------
Q ss_pred CCCeEEccccCCCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEE
Q 014009 262 PEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVI 308 (432)
Q Consensus 262 P~GAVvK~sa~~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvVi 308 (432)
|.++.+..-..++. +.|+=-++..+-+..-+|.. ||||.|
T Consensus 156 ~~~~~i~LkT~d~~------k~~~lg~~i~~ql~~~~V~~-GDVI~I 195 (450)
T COG1224 156 PSGAIITLKTKDEE------KTLRLGPEIAEQLVKEGVEE-GDVIYI 195 (450)
T ss_pred ccceEEEEEecccc------eEeecCHHHHHHHHHhCccc-CCEEEE
No 40
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=31.14 E-value=67 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=19.7
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHhc
Q 014009 37 SAFQVYGEYVSGSISDEQRMNVVLNS 62 (432)
Q Consensus 37 ~~~e~~g~~~~G~i~~eel~~~e~~a 62 (432)
++.+.+..|..|+++.++..++|.+.
T Consensus 3 ~~~~~l~~y~dg~L~~~~~~~~~~HL 28 (36)
T PF13490_consen 3 EVRELLSAYLDGELSPEERARLEAHL 28 (36)
T ss_dssp --HHHHHHHHCT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 56788899999999999999999863
No 41
>PRK01777 hypothetical protein; Validated
Probab=30.81 E-value=45 Score=28.59 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=36.4
Q ss_pred chhHHHHcCCCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHHhc
Q 014009 324 TPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRK 401 (432)
Q Consensus 324 ~~t~al~g~Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~R~~~ 401 (432)
+.-.+|...|+-....=| .+|-..-|+--=|++++. .|+|||+|+|=-+ |.+|+.|..++|++
T Consensus 28 Tv~dal~~sgi~~~~pei---~~~~~~vgI~Gk~v~~d~-------~L~dGDRVeIyrP-----L~~DPk~~Rr~ra~ 90 (95)
T PRK01777 28 TVEEAIRASGLLELRTDI---DLAKNKVGIYSRPAKLTD-------VLRDGDRVEIYRP-----LLADPKELRRKRAE 90 (95)
T ss_pred cHHHHHHHcCCCccCccc---ccccceEEEeCeECCCCC-------cCCCCCEEEEecC-----CCCCHHHHHHHHHH
Confidence 344777777764442101 001011111123666554 5889999999665 56889988877764
No 42
>PF10683 DBD_Tnp_Hermes: Hermes transposase DNA-binding domain ; InterPro: IPR018473 This domain confers specific DNA-binding on Hermes transposase [].; PDB: 2BW3_B.
Probab=30.52 E-value=69 Score=26.25 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhCCCCccccccHHHHHHHHHHHHhcC
Q 014009 108 LAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALG 143 (432)
Q Consensus 108 ~ag~~iv~lv~~~i~prdIlT~~af~NAi~v~~A~G 143 (432)
++.+++++++-+|+||-+|++-+-|.|=+..++.+|
T Consensus 15 ~~~~k~~qw~v~dcRpfsiv~gsGfk~la~~li~IG 50 (68)
T PF10683_consen 15 EATDKCTQWCVKDCRPFSIVSGSGFKKLAQFLINIG 50 (68)
T ss_dssp HHHHHHHHHHHHCT--GGGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcceeeccccHHHHHHHHHHHh
Confidence 345677788888999999999999999887776665
No 43
>PF04199 Cyclase: Putative cyclase; InterPro: IPR007325 Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form a part of the active site.; PDB: 2B0A_A 3KRV_A 1R61_A.
Probab=29.87 E-value=63 Score=29.31 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCCceeeeeEEEeCCHH------------HHHHHHh--CCCCCCCCcEEEEeC
Q 014009 272 KEGLYFSGPALVFEGEE------------SMIAAIS--EDPMSFKGKVVVIRG 310 (432)
Q Consensus 272 ~~~~~~~GpA~VF~see------------~a~~ai~--~g~i~~~gdVvViRy 310 (432)
.....|-|||+|+|-.. +..++.+ ..+|++ ||+|+||-
T Consensus 72 ~pl~~~~g~~vviD~~~~~~~~~~~It~~dl~~~~~~~~~~i~~-gdivlirT 123 (171)
T PF04199_consen 72 IPLERFIGPAVVIDVSHDKQPPGEAITAEDLEAAWEAQGVEIRP-GDIVLIRT 123 (171)
T ss_dssp SSCCCCEEEEEEEETTT------SEE-HHHHTT------S---T-TSEEEEE-
T ss_pred hhhhhccCcEEEEeccccccCCCceEcHHHHHhhhcccccccCC-CcEEEEEC
Confidence 34556889999988555 2333333 237889 99999985
No 44
>PF11213 DUF3006: Protein of unknown function (DUF3006); InterPro: IPR021377 This family of proteins has no known function.
Probab=29.57 E-value=55 Score=26.26 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=18.9
Q ss_pred eecCCEEEEecCCCEEEEecCHHHHHHHHhc
Q 014009 371 IQNGDIINIDVQKRRIDVQLTDEEMEERRRK 401 (432)
Q Consensus 371 V~dGD~I~IDi~~~~l~l~v~~eel~~R~~~ 401 (432)
++.||++.| ...-.+.+++++=++|++.
T Consensus 34 ~keGDvl~i---~~~~~~~~d~eeT~~r~~~ 61 (71)
T PF11213_consen 34 AKEGDVLEI---GEDGSIEIDPEETEARRKE 61 (71)
T ss_pred CCcccEEEE---CCCceEEECHHHHHHHHHH
Confidence 568998888 3333455677877777754
No 45
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=29.45 E-value=64 Score=30.96 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=33.9
Q ss_pred cEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCC---CCCCCCccchHhhHHHHHHHhcCCC
Q 014009 14 PGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCP---GAGACGGMYTANTMASAIEAMGMSL 89 (432)
Q Consensus 14 Psi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp---~~GsC~~mgTANTM~~l~EaLGl~L 89 (432)
=.|+|+||||-. + ..+.-...+...+.+..-| --|.|-| ||.|+++||=..
T Consensus 47 ~giIlsGgp~sv--~-----------------~~~~w~~~~~~~i~~~~~p~~pvLGIC~G------~Ql~A~~lGg~V 100 (198)
T COG0518 47 DGIIISGGPMSV--Y-----------------DEDPWLPREKDLIKDAGVPGKPVLGICLG------HQLLAKALGGKV 100 (198)
T ss_pred CEEEEcCCCCCC--c-----------------cccccchhHHHHHHHhCCCCCCEEEEChh------HHHHHHHhCCEE
Confidence 368999999633 2 1111235566677777777 5577766 799999998543
No 46
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=28.91 E-value=2.1e+02 Score=30.17 Aligned_cols=101 Identities=22% Similarity=0.236 Sum_probs=57.8
Q ss_pred eeeeeEE---EeC-CHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCC----
Q 014009 276 YFSGPAL---VFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFS---- 347 (432)
Q Consensus 276 ~~~GpA~---VF~-see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfS---- 347 (432)
++-|||+ ++. +.....++|+. ..+ |||+||-. |....-=+-|+++ .+.+.+|+ .++|+||+.-
T Consensus 262 ~~~G~A~Tv~~~~~d~~~~~~~~~~--~~~-G~VlVi~~-~~~~~a~~G~~~~--~~a~~~G~---~G~VidG~vRD~~~ 332 (430)
T PRK07028 262 KMVGKAVTVQTFAGDWAKPVEAIDV--AKP-GDVIVIYN-SSKDIAPWGELAT--LSCLNKGI---AGVVIDGAVRDVDE 332 (430)
T ss_pred eEEEEEEEEEeeCCCcHHHHHHHhc--CCC-CeEEEEEC-CCCCceeecHHHH--HHHHHCCC---eEEEEeeccCCHHH
Confidence 5677764 333 23334566664 588 99999988 5442212223332 33455675 7899999743
Q ss_pred ----CC---CCCcceEE---ecccccCCCCeE----EeecCCEEEEecCCCEEE
Q 014009 348 ----GG---SHGFVVGH---VCPEAQDGGPIG----LIQNGDIINIDVQKRRID 387 (432)
Q Consensus 348 ----Ga---s~G~~igH---VsPEAa~GGpIa----lV~dGD~I~IDi~~~~l~ 387 (432)
|. ++|++..+ ..| ...+.||. .|+.||.|.=| ..+-+-
T Consensus 333 i~~~~~pv~~~g~~p~~~~~~~~-~~~nvpv~~ggv~V~pGD~i~aD-~dGvvv 384 (430)
T PRK07028 333 IRKLGFPVFARAIVPNAGEPKGF-GEINAEIVCGGQTVRPGDWIIGD-ENGVVV 384 (430)
T ss_pred HhhCCCCeEeeecCCCCCCCCCc-cccCCCEEECCEEECCCCEEEEc-CCceEE
Confidence 11 33333211 112 23455664 69999999999 455543
No 47
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=46 Score=30.68 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=30.5
Q ss_pred hcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCCCCccccc
Q 014009 85 MGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDII 127 (432)
Q Consensus 85 LGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~i~prdIl 127 (432)
.|=+||..-++|+.- ...+.+.-++|+.|.++|++|+||=
T Consensus 12 s~SAlPY~r~~PtWl---K~~~ddvkeqI~K~akKGltpsqIG 51 (151)
T KOG0400|consen 12 SGSALPYRRSVPTWL---KLTADDVKEQIYKLAKKGLTPSQIG 51 (151)
T ss_pred ccCccccccCCcHHH---hcCHHHHHHHHHHHHHcCCChhHce
Confidence 355678887777654 3445667789999999999999983
No 48
>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional
Probab=27.32 E-value=27 Score=35.04 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=30.6
Q ss_pred eEEeecCCEEEEecCCCEEEEecCHHHHHHHHhcCCCCCCC----CChHHHHHHHHh
Q 014009 368 IGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNK----VNRGVLYKYIKN 420 (432)
Q Consensus 368 IalV~dGD~I~IDi~~~~l~l~v~~eel~~R~~~~~~~~~~----~~~G~l~~Y~~~ 420 (432)
...+++||.|+||+++++|..+.+.+++.-+ |.... ...|++..+++.
T Consensus 189 ~e~i~~Gd~i~VDl~~~~v~n~t~g~~~~~~-----p~~~~~~Il~aGGl~~y~r~~ 240 (246)
T PLN00072 189 CEECKTGDVVTVELGNSVLINHTTGKEYKLK-----PIGDAGPVIDAGGIFAYARKT 240 (246)
T ss_pred HHhcCCCCEEEEECCCCEEEECCCCeEEEec-----CCHHHHHHHHcCCHHHHHHhh
Confidence 3457899999999999998766554433211 11111 136888877764
No 49
>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.
Probab=25.89 E-value=30 Score=32.25 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=45.1
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCC--C-CCCCCcceEEecccccCCCCeEEee
Q 014009 298 PMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRF--S-GGSHGFVVGHVCPEAQDGGPIGLIQ 372 (432)
Q Consensus 298 ~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRf--S-Gas~G~~igHVsPEAa~GGpIalV~ 372 (432)
++++ |||||-...==.|. -||. ..-+|+..|+.- +|.- +|. . --+.|+.+. .+|+.. ..++
T Consensus 44 ~~~~-g~iiVaG~NFG~GS--SRE~--A~~al~~~Gi~a---VIA~SFarIf~rN~iN~GLp~~-~~~~~~-----~~l~ 109 (156)
T TIGR02084 44 KVKE-GDIIVAGENFGCGS--SREH--APIAIKASGISC---VIAKSFARIFYRNAINIGLPIV-ESEEAV-----DEIE 109 (156)
T ss_pred hcCC-CCEEEccCcccCCC--cHHH--HHHHHHHhCCCE---EEEehHHHHHHhhhhhCCCCee-cCHHHH-----HHhC
Confidence 4678 88888642211111 1442 223577777622 2221 111 1 115566543 566544 3478
Q ss_pred cCCEEEEecCCCEEEEecCHH
Q 014009 373 NGDIINIDVQKRRIDVQLTDE 393 (432)
Q Consensus 373 dGD~I~IDi~~~~l~l~v~~e 393 (432)
+||.|+||++++++.-....+
T Consensus 110 ~gd~i~idl~~~~v~~~~~g~ 130 (156)
T TIGR02084 110 EGDEVEVDLEKGIIKNLTKGK 130 (156)
T ss_pred CCCEEEEECCCCEEEEecCCE
Confidence 999999999999986554443
No 50
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=25.19 E-value=1.4e+02 Score=26.89 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=35.6
Q ss_pred ceEEEcCCCCCCCCCCcc-eEEec-c-cccCCCCeEEeecCCEEEEec-CCCEEEEecC
Q 014009 337 EVALLTDGRFSGGSHGFV-VGHVC-P-EAQDGGPIGLIQNGDIINIDV-QKRRIDVQLT 391 (432)
Q Consensus 337 ~valITDGRfSGas~G~~-igHVs-P-EAa~GGpIalV~dGD~I~IDi-~~~~l~l~v~ 391 (432)
.++...++=+-|..+=++ .||.. . ..+.-..|..|+.||.|.|.- ..++..-.|+
T Consensus 36 ~~g~~~~~~~pG~~Gn~viaGH~~~~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~ 94 (144)
T cd05829 36 QAGWYAGGPKPGEKGTAVLAGHVDSRGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVD 94 (144)
T ss_pred eeeEeCCCCCCCCCCCEEEEEecCCCCCChhhcchhcCCCCCEEEEEECCCCEEEEEEe
Confidence 455555555556433333 39973 2 345567899999999999999 4555555544
No 51
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=23.00 E-value=73 Score=29.73 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHHHHHHHhcCC
Q 014009 15 GIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMS 88 (432)
Q Consensus 15 si~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~~l~EaLGl~ 88 (432)
.|+++|||+-|.... ...+-++++ ..-.|--|.|-| ||.+++++|-+
T Consensus 46 ~iilsgGpg~p~~~~--------------------~~~~~i~~~-~~~~PvLGIC~G------~Qll~~~~GG~ 92 (188)
T TIGR00566 46 LIVISPGPCTPNEAG--------------------ISLEAIRHF-AGKLPILGVCLG------HQAMGQAFGGD 92 (188)
T ss_pred EEEEcCCCCChhhcc--------------------hhHHHHHHh-ccCCCEEEECHH------HHHHHHHcCCE
Confidence 599999999874311 013333333 234677788887 69999999943
No 52
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=22.99 E-value=54 Score=29.12 Aligned_cols=87 Identities=24% Similarity=0.345 Sum_probs=47.7
Q ss_pred ceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhH---HHHc--CCCCCceEEEcCCCCCCC
Q 014009 275 LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTS---AIMG--AGLGKEVALLTDGRFSGG 349 (432)
Q Consensus 275 ~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~---al~g--~Gl~~~valITDGRfSGa 349 (432)
-...|+++|=+|-+|+.+ |.+. |.|+|..--. .||..... +|.- .||-..-|+| |-
T Consensus 11 gsv~G~~~vA~~~~~~~~-----k~~~-g~iLv~~std-------~d~v~~~eKa~aiItee~glTshaAVv------gl 71 (111)
T COG3848 11 GSVSGRAVVADSGKEAEQ-----KFEE-GVILVTPSTD-------ADFVPALEKAAAIITEEGGLTSHAAVV------GL 71 (111)
T ss_pred cceeeEEEEccCHhHhhC-----Cccc-CcEEEeccCC-------hhhHHHHHhhheeEeccCCccccceee------Ee
Confidence 346899999999988744 4556 7777753221 12332211 1111 2333333322 22
Q ss_pred CCCcce-EEecccccCCCCeEEeecCCEEEEecCCCEE
Q 014009 350 SHGFVV-GHVCPEAQDGGPIGLIQNGDIINIDVQKRRI 386 (432)
Q Consensus 350 s~G~~i-gHVsPEAa~GGpIalV~dGD~I~IDi~~~~l 386 (432)
+-|+++ .-+ -.--.+++||++|+||...+.+
T Consensus 72 ~LgvPvIvG~------~~at~~i~dG~~vTvD~~rG~V 103 (111)
T COG3848 72 ELGVPVIVGV------KKATQLIRDGAIVTVDAQRGVV 103 (111)
T ss_pred ecCCcEEEEe------cchhhhccCCCEEEEecccceE
Confidence 334432 211 1234679999999999998865
No 53
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.03 E-value=75 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.4
Q ss_pred HHHHhcCCCCHHHHHHHHH
Q 014009 42 YGEYVSGSISDEQRMNVVL 60 (432)
Q Consensus 42 ~g~~~~G~i~~eel~~~e~ 60 (432)
-..|.+|.||++|+.+.-.
T Consensus 9 ~~l~~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 9 KELYDKGEISEEEYEQKKA 27 (31)
T ss_pred HHHHHcCCCCHHHHHHHHH
Confidence 3469999999999987644
No 54
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=21.92 E-value=97 Score=26.05 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCC-cchhHHHHcCCCCCceEEE-cCCCCCCCCCCcceEEecccccCCCCeEEeecCCEEEEecCCCE
Q 014009 311 EGPKGGPGMPEM-LTPTSAIMGAGLGKEVALL-TDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRR 385 (432)
Q Consensus 311 eGPkGgPGMpEm-l~~t~al~g~Gl~~~valI-TDGRfSGas~G~~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~ 385 (432)
-+.|||.|=.=. .....++..+. |++|.|+ +|=++|. |.|.||.+...
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~-~~~~~l~d~d~~~~~--------------------------D~IIiDtpp~~ 54 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEA-GRRVLLVDLDLQFGD--------------------------DYVVVDLGRSL 54 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcC-CCcEEEEECCCCCCC--------------------------CEEEEeCCCCc
Confidence 578887664332 22334555551 4799999 9988875 99999999864
No 55
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=21.57 E-value=42 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=19.5
Q ss_pred hHHHH-HHHHHHHHHHHhhCCCCcccc
Q 014009 101 LKLDE-CRLAGKYLLELLRMDLKPRDI 126 (432)
Q Consensus 101 ~r~~~-a~~ag~~iv~lv~~~i~prdI 126 (432)
.+..+ +.+.-+.|++|.++|++|++|
T Consensus 24 ~W~~~~~~eVe~~I~klakkG~tpSqI 50 (60)
T PF08069_consen 24 SWLKYSPEEVEELIVKLAKKGLTPSQI 50 (60)
T ss_dssp TT--S-HHHHHHHHHHHCCTTHCHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHcCCCHHHh
Confidence 34443 366778999999999999987
No 56
>COG3462 Predicted membrane protein [Function unknown]
Probab=21.01 E-value=79 Score=28.30 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=15.2
Q ss_pred HHHhcCCCCHHHHHHHHH
Q 014009 43 GEYVSGSISDEQRMNVVL 60 (432)
Q Consensus 43 g~~~~G~i~~eel~~~e~ 60 (432)
..|++|+||+||+..+-+
T Consensus 96 ER~AkGEItEEEY~r~~~ 113 (117)
T COG3462 96 ERYAKGEITEEEYRRIIR 113 (117)
T ss_pred HHHhcCCCCHHHHHHHHH
Confidence 469999999999987654
No 57
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=20.95 E-value=1.2e+02 Score=26.59 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=36.4
Q ss_pred eEEEcCCCCCCCCCCcc--eEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCH
Q 014009 338 VALLTDGRFSGGSHGFV--VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTD 392 (432)
Q Consensus 338 valITDGRfSGas~G~~--igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~ 392 (432)
++..-+.-+-|. .|-+ .||.. ..=+.|..++.||.|.+.-.+++.+-.|++
T Consensus 31 ~g~~~~~~~pg~-~gn~vIaGH~~---~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~~ 83 (127)
T cd05828 31 PGHLAGSALPGE-GGNIVIAGHRD---THFRFLGELEPGDIITLQTLGGTYTYRVTS 83 (127)
T ss_pred CEEEcCCCCCCC-CCcEEEEEeCc---hhhhChhcCCCCCEEEEEECCEEEEEEEee
Confidence 444444444443 3444 39997 556789999999999999998888877654
No 58
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=20.59 E-value=76 Score=31.56 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=34.8
Q ss_pred HHHHHHHhcC-CCCchhhhHHHHHHHhCCCcChHHHHH----hhcCCCcee
Q 014009 134 NAMVIVMALG-GSTNAVLHLIAIARSVGLELSIDEFQK----VSDEVPFLA 179 (432)
Q Consensus 134 NAi~v~~A~G-GSTN~vlHL~AIA~eagi~l~l~dfd~----is~~~P~l~ 179 (432)
+-|=+-.-+| ||+|++-=|.++.+-.+..++.++.-+ |+..||+..
T Consensus 93 K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGaDvPffl 143 (257)
T PRK04181 93 KNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAFFI 143 (257)
T ss_pred eCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCccEEe
Confidence 3344444555 589999999999999999999888655 677789864
No 59
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=20.33 E-value=83 Score=29.26 Aligned_cols=17 Identities=29% Similarity=0.675 Sum_probs=15.7
Q ss_pred eecCCEEEEecCCCEEE
Q 014009 371 IQNGDIINIDVQKRRID 387 (432)
Q Consensus 371 V~dGD~I~IDi~~~~l~ 387 (432)
+++||.|+||++++++.
T Consensus 106 i~~gd~i~vdl~~~~v~ 122 (154)
T TIGR02087 106 IKDGDEVTVDLETGEIR 122 (154)
T ss_pred CCCCCEEEEECCCCEEE
Confidence 57999999999999987
No 60
>PRK06354 pyruvate kinase; Provisional
Probab=20.28 E-value=4.7e+02 Score=29.45 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=53.2
Q ss_pred ceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCCCC---
Q 014009 275 LYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSH--- 351 (432)
Q Consensus 275 ~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGas~--- 351 (432)
-..+||+++-.+.+++ .++.+ ++|+|.+.--|. ++. +. ..-.++||+-- |-+||
T Consensus 491 G~~~G~v~~~~~~~~~------~~~~~-~~ILV~~~~~P~-------~~~----~~----~~~~GiVt~~G-g~tSH~AI 547 (590)
T PRK06354 491 KSVSGKARVAKTAAEV------AKVNE-GDILVTPSTDAD-------MIP----AI----EKAAAIITEEG-GLTSHAAV 547 (590)
T ss_pred ccccceEEEeCChHhh------ccCCC-CeEEEeCCCCHH-------HHH----hH----HhcEEEEEecC-CCcchHHH
Confidence 3468999999998874 35677 999999887763 211 11 23456777611 11233
Q ss_pred -----Ccc-eEEecccccCCCCeEEeecCCEEEEecCCCEEE
Q 014009 352 -----GFV-VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRID 387 (432)
Q Consensus 352 -----G~~-igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~ 387 (432)
|.+ |.- . ++....+++||.|++|-.++.+.
T Consensus 548 vAR~lgIPaVvg-~-----~~~~~~l~~G~~v~vDg~~G~V~ 583 (590)
T PRK06354 548 VGLRLGIPVIVG-V-----KNATSLIKDGQIITVDAARGVVY 583 (590)
T ss_pred HHHhcCCCEEEe-c-----cchhhccCCCCEEEEECCCCEEE
Confidence 222 211 1 22346789999999999999874
No 61
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P
Probab=20.26 E-value=81 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.609 Sum_probs=13.9
Q ss_pred EeecCCEEEEecCCCE
Q 014009 370 LIQNGDIINIDVQKRR 385 (432)
Q Consensus 370 lV~dGD~I~IDi~~~~ 385 (432)
+|+.||.|.||-..++
T Consensus 37 FI~~Gd~I~V~T~~g~ 52 (56)
T cd05794 37 FIKEGEKIKVDTRTGE 52 (56)
T ss_pred eecCCCEEEEECCCCc
Confidence 6899999999988765
No 62
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=20.07 E-value=48 Score=34.28 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.4
Q ss_pred HhcCCCCchhhhHHHHHHHhCCC-cChHH
Q 014009 140 MALGGSTNAVLHLIAIARSVGLE-LSIDE 167 (432)
Q Consensus 140 ~A~GGSTN~vlHL~AIA~eagi~-l~l~d 167 (432)
++.||.= -+|...+|++.|++ +++++
T Consensus 281 v~~gGaG--~~~a~~lA~~lg~~~v~~~~ 307 (318)
T TIGR03123 281 VVAAGAG--EFLAKEAAARLGRECIDVDE 307 (318)
T ss_pred eEEecch--HHHHHHHHHHcCCCeecHHH
Confidence 6777765 78999999999986 55544
Done!