Query 014009
Match_columns 432
No_of_seqs 170 out of 1163
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 03:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gp4_A 6-phosphogluconate dehy 100.0 8E-159 3E-163 1252.5 24.2 418 1-430 178-620 (628)
2 3noj_A 4-carboxy-4-hydroxy-2-o 52.4 18 0.00063 34.3 5.5 104 276-388 56-180 (238)
3 3c8o_A Regulator of ribonuclea 50.0 13 0.00045 33.3 3.9 100 275-382 30-149 (162)
4 1zym_A Enzyme I; phosphotransf 46.2 8.1 0.00028 37.0 2.0 30 368-397 209-238 (258)
5 1j3l_A Demethylmenaquinone met 45.1 13 0.00045 33.4 3.1 100 275-382 29-148 (164)
6 1q5x_A Regulator of RNAse E ac 43.0 9.3 0.00032 34.1 1.7 99 276-382 31-149 (161)
7 1vi4_A Regulator of ribonuclea 42.7 10 0.00036 34.4 2.0 102 276-386 34-155 (174)
8 2pcn_A S-adenosylmethionine:2- 42.0 11 0.00037 33.8 2.0 100 275-382 28-147 (161)
9 2cqg_A TDP-43, TAR DNA-binding 38.4 31 0.0011 26.8 4.0 41 276-317 55-96 (103)
10 1x5o_A RNA binding motif, sing 37.6 29 0.00098 27.6 3.7 40 276-316 64-114 (114)
11 2e28_A Pyruvate kinase, PK; al 37.0 29 0.00099 37.2 4.6 89 274-389 486-582 (587)
12 2fc8_A NCL protein; structure 36.8 27 0.00092 27.1 3.4 40 276-316 52-94 (102)
13 2dnz_A Probable RNA-binding pr 34.6 44 0.0015 25.4 4.3 40 277-317 46-88 (95)
14 1nxj_A Probable S-adenosylmeth 33.5 18 0.00063 33.1 2.1 99 276-382 60-178 (183)
15 2cqa_A RUVB-like 2; TIP48, TIP 33.4 23 0.00077 29.5 2.4 19 370-388 62-80 (95)
16 2fc9_A NCL protein; structure 31.5 39 0.0013 26.1 3.5 39 277-316 52-93 (101)
17 2hi6_A UPF0107 protein AF0055; 29.9 15 0.00051 32.6 0.9 23 367-389 110-132 (141)
18 2ols_A Phosphoenolpyruvate syn 29.5 9.6 0.00033 42.1 -0.6 91 274-392 368-469 (794)
19 2cq0_A Eukaryotic translation 29.3 48 0.0016 25.7 3.7 40 276-316 55-97 (103)
20 3mvn_A UDP-N-acetylmuramate:L- 29.2 39 0.0013 29.3 3.4 32 280-313 118-149 (163)
21 1fjc_A Nucleolin RBD2, protein 28.8 41 0.0014 25.6 3.2 40 276-316 51-93 (96)
22 1x5t_A Splicing factor 3B subu 27.4 54 0.0018 24.9 3.6 40 277-317 47-89 (96)
23 3t05_A Pyruvate kinase, PK; te 26.8 86 0.003 33.7 6.2 88 273-387 504-599 (606)
24 3k4i_A Uncharacterized protein 26.6 66 0.0022 30.5 4.7 84 298-388 80-181 (244)
25 1p27_B RNA-binding protein 8A; 26.4 42 0.0015 26.1 2.9 40 276-316 63-105 (106)
26 2cpe_A RNA-binding protein EWS 25.5 70 0.0024 25.1 4.1 39 277-316 64-105 (113)
27 4g1h_A Sortase family protein; 25.2 28 0.00097 32.5 1.9 38 354-391 112-150 (215)
28 2npt_A Dual specificity mitoge 24.9 22 0.00076 29.7 1.0 36 354-399 45-80 (106)
29 2d9o_A DNAJ (HSP40) homolog, s 24.9 66 0.0022 26.0 3.8 37 277-314 53-90 (100)
30 4g9q_A 4-carboxymuconolactone 23.3 1.6E+02 0.0054 28.4 6.8 125 43-171 99-240 (269)
31 2w1j_A Putative sortase, sorta 22.5 45 0.0015 30.9 2.7 38 354-391 112-150 (212)
32 2dgs_A DAZ-associated protein 22.3 70 0.0024 24.5 3.4 38 277-315 51-90 (99)
33 1t2w_A Sortase; transpeptidase 22.3 63 0.0022 27.6 3.4 52 338-391 40-95 (145)
34 2dgt_A RNA-binding protein 30; 21.7 86 0.003 23.7 3.8 36 278-314 44-82 (92)
35 2jik_A Synaptojanin-2 binding 21.7 40 0.0014 26.3 1.9 60 333-398 19-81 (101)
36 2do4_A Squamous cell carcinoma 21.5 1E+02 0.0035 23.6 4.2 39 277-316 57-98 (100)
37 3ucg_A Polyadenylate-binding p 21.4 61 0.0021 24.1 2.8 41 277-319 47-89 (89)
38 2d9p_A Polyadenylate-binding p 20.9 75 0.0026 24.5 3.4 39 276-315 53-94 (103)
39 2cpi_A CCR4-NOT transcription 20.8 77 0.0026 25.1 3.5 38 276-314 61-101 (111)
40 2cpf_A RNA binding motif prote 20.8 96 0.0033 23.6 3.9 40 276-316 48-90 (98)
41 2cpd_A Apobec-1 stimulating pr 20.4 1E+02 0.0034 23.6 4.0 37 278-315 51-90 (99)
42 3o0p_A Sortase family protein; 20.2 48 0.0017 31.0 2.4 51 341-391 100-154 (216)
43 2hwg_A Phosphoenolpyruvate-pro 20.1 96 0.0033 33.1 4.9 27 369-395 210-236 (575)
No 1
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1
Probab=100.00 E-value=7.5e-159 Score=1252.47 Aligned_cols=418 Identities=30% Similarity=0.512 Sum_probs=378.8
Q ss_pred ChHHHHhHHhc-CCcEEEEcCCCCCCCccCCeecceehHHHHHHHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHH
Q 014009 1 MPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMA 79 (432)
Q Consensus 1 vPG~lMaaar~-niPsi~v~gGpm~~G~~~g~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~ 79 (432)
+|||||||+|+ |||+||||||||++|+++|+++++. ++|++|+||+|||.++|+++|||||+|+|||||||||
T Consensus 178 ~PG~LMaA~r~~niPaIfV~gGpM~~G~~~g~~~~i~------~~~a~G~i~~eel~~~E~~acps~GsC~gmgTANTM~ 251 (628)
T 2gp4_A 178 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIR------QQFAQGKVDRAQLLEAEAQSYHSAGTCTFYGTANSNQ 251 (628)
T ss_dssp THHHHHHHHTTTTSCEEECCCCC-------------------------CCTHHHHHHHTTSSCHHHHHHHHHCC-----C
T ss_pred cHHHHHHHHhcCCCCEEEEeeCCCCCCCCCCceeehH------HHHHcCCCCHHHHHHHHHhcCCCCCccCCcChHHHHH
Confidence 79999999999 7999999999999999999988664 6899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCChhHHHHHHHHHHHHHHHhhCC--CCc-cccccHHHHHHHHHHHHhcCCCCchhhhHHHHH
Q 014009 80 SAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD--LKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIA 156 (432)
Q Consensus 80 ~l~EaLGl~LPgsa~ipA~~~~r~~~a~~ag~~iv~lv~~~--i~p-rdIlT~~af~NAi~v~~A~GGSTN~vlHL~AIA 156 (432)
|++|+|||+||||+++||++++|.++|+++|++||+|++++ +|| |||+|++||+|||+++||+|||||++|||+|||
T Consensus 252 ~l~EaLGl~LPGsa~ipA~~~~R~~la~~ag~~iv~l~~~~~d~~P~~dIlT~~AfeNAi~v~~A~GGSTN~vLHL~AiA 331 (628)
T 2gp4_A 252 LMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAA 331 (628)
T ss_dssp HHHHHTTCSCTTGGGSCTTCHHHHHHHHHHHHHHHHTSTTSSSCCCHHHHSSHHHHHHHHHHHHHTTCCTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCChHHhCCHHHHHHHHHHHhccCccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999955 999 999999999999999999999999999999999
Q ss_pred HHhCCCcChHHHHHhhcCCCceeeccCCChhhHHHHHhcCChHHHHHHHHHCCCCCCCCCcccCcCHHHHHhcC------
Q 014009 157 RSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTF------ 230 (432)
Q Consensus 157 ~eagi~l~l~dfd~is~~~P~l~~~~P~G~~~~~dl~~AGGvpav~k~L~~~glL~~d~~TVtG~tl~e~l~~~------ 230 (432)
+|+||+|||||||+||++||+||+++|||+|+|+|||+|||+|+|||||.++||||+|++|||||||+||++++
T Consensus 332 ~eaGv~ltldDfd~is~~vP~L~~l~P~G~~~medf~~AGGvpavm~eL~~~GlLh~D~~TVtGktl~e~l~~~~~~~~~ 411 (628)
T 2gp4_A 332 RAAGIIVNWDDFSELSDAVPLLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE 411 (628)
T ss_dssp HHTTCCCCHHHHHHHHTTCCBCBCCGGGSSCCHHHHHHHTHHHHHHHHHHHHTCSCCCCEETTEECGGGGGEEEEEETTE
T ss_pred HHcCCCCCHHHHHHHhccCCCcceeCCCChhHHHHHHHccCHHHHHHHHHHCCCcCCCCCeeCCCCHHHHHhCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999873
Q ss_pred ------CCCCCCCCccCCCCCCCCCCCCEEEeeccCCCCCeEEccccCC--CceeeeeEEEeCCHHHHHHHHhCCCCCCC
Q 014009 231 ------PHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKE--GLYFSGPALVFEGEESMIAAISEDPMSFK 302 (432)
Q Consensus 231 ------~~~~~d~~VIr~~~~P~~~~Ggl~vL~GNLAP~GAVvK~sa~~--~~~~~GpA~VF~see~a~~ai~~g~i~~~ 302 (432)
+..+.|++||||+++||+++|||+||+|||| |||+|+||++ .++|+|||||||||||+++||++|+|++
T Consensus 412 ~~~~~~~~~~~d~~VIrp~~~P~~~~GGl~vL~GNLa--gaViK~sav~~~~~~~~GpArVFdsee~a~~ai~~g~i~~- 488 (628)
T 2gp4_A 412 LRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLG--RAVIKVSAVQPQHRVVEAPAVVIDDQNKLDALFKSGALDR- 488 (628)
T ss_dssp EEEEECCSSCSCTTTBCCSSSCSBSSCCEEEEEETTE--EEEEECTTSCGGGSEEEEEEEEESSGGGHHHHHHTTTTSS-
T ss_pred cccccCCCCCCCCCeeCChhhcCCCCCCEEEEecccc--CEEeEccccCCccceEEeeeEEeCCHHHHHHHHhCCCCCC-
Confidence 2223689999999999999999999999998 7999999975 5679999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcchhHHHH---cCCCCCceEEEcCCCCCCCCCC-cceEEecccccCCCCeEEeecCCEEE
Q 014009 303 GKVVVIRGEGPKGGPGMPEMLTPTSAIM---GAGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIIN 378 (432)
Q Consensus 303 gdVvViRyeGPkGgPGMpEml~~t~al~---g~Gl~~~valITDGRfSGas~G-~~igHVsPEAa~GGpIalV~dGD~I~ 378 (432)
|||||||||||||+ |||||+.+|++|. ++|+ +|||||||||||+|+| +|||||||||++|||||+|||||+|+
T Consensus 489 gdVvVIRyeGPkG~-GMpEml~~T~~l~~L~g~Gl--~VALITDGRfSGaS~gg~~igHVsPEAa~GGpIalV~dGD~I~ 565 (628)
T 2gp4_A 489 DCVVVVKGQGPKAN-GMPELHKLTPLLGSLQDKGF--KVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIR 565 (628)
T ss_dssp SEEEEECSCSHHHH-SCCBCCSSHHHHHHHHHTTC--CEEEEESSBCSSSCCSSCEEEEEESCGGGTCGGGTCCTTCEEE
T ss_pred CeEEEEeCCCCCCC-CchhhhhhhhhHHHHHhCCC--eEEEecccCcCCccCCCCeEEEEChhhhcCCcEEEEeCCCEEE
Confidence 99999999999986 9999999997555 9998 6999999999999995 99999999999999999999999999
Q ss_pred EecCCCEEEEecCHHHHHHHHhcCCCCCC---CCChHHHHHHHHhCCCcccCccc
Q 014009 379 IDVQKRRIDVQLTDEEMEERRRKWTPPPN---KVNRGVLYKYIKNVQSASNGCVT 430 (432)
Q Consensus 379 IDi~~~~l~l~v~~eel~~R~~~~~~~~~---~~~~G~l~~Y~~~V~~A~~GA~~ 430 (432)
||+++|+|+|+||||||++||+.|+||++ ++++|||++|+++|+||++||++
T Consensus 566 IDi~~r~l~l~v~deEla~R~~~~~~~~~~~~~~~~g~l~~y~~~V~sA~~GA~~ 620 (628)
T 2gp4_A 566 VDALTGELSLLVSDTELATRTATEIDLRHSRYGMGRELFGVLRSNLSSPETGARS 620 (628)
T ss_dssp EETTTTEEEECSCHHHHHHCCCCCCCCGGGSSSTTGGGSHHHHHTCCCGGGTSCC
T ss_pred EecCCCEEEEeeCHHHHHHhHhcCCCCcccccCccHHHHHHHHHhCcCHhhCCee
Confidence 99999999999999999999999988765 67899999999999999999987
No 2
>3noj_A 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloac decarboxylase; class II aldolase, A-B-B-A sandwich, metalloprotein, lyase; HET: PG4; 1.82A {Pseudomonas putida}
Probab=52.40 E-value=18 Score=34.31 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=58.2
Q ss_pred eeeeeE---EEeC-CHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC--
Q 014009 276 YFSGPA---LVFE-GEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 349 (432)
Q Consensus 276 ~~~GpA---~VF~-see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa-- 349 (432)
+|-||| ++|. +--...++|+ ...+ |||+||-..|..-.-=+=|++. ...+..|+ .++|+||..-=.
T Consensus 56 ~~~G~A~TV~~~p~dn~~~~~ai~--~~~~-G~VlVvd~~g~~~~A~~G~~la--~~a~~~G~---aGiVidG~vRD~~~ 127 (238)
T 3noj_A 56 SLAGSAVTVLVAPGDNWMFHVAVE--QCRP-GDVLVVSPSSPCTDGYFGDLLA--TSLQARGV---RALIVDAGVRDTQT 127 (238)
T ss_dssp CEEEEEEEEEECTTBCHHHHHHHT--TCCT-TEEEEEEESSCCCSBCCCHHHH--HHHHHTTC---CEEEEEEEECCHHH
T ss_pred eEEEEEEEEEEECCCcHHHHHHHH--hcCC-CCEEEEECCCCCCeEehHHHHH--HHHHHCCC---cEEEeecccCCHHH
Confidence 466665 3442 2234455665 4688 9999998777642222334443 33455675 788999953110
Q ss_pred ----CCCcceEEeccc-------ccCCCCe----EEeecCCEEEEecCCCEEEE
Q 014009 350 ----SHGFVVGHVCPE-------AQDGGPI----GLIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 350 ----s~G~~igHVsPE-------Aa~GGpI----alV~dGD~I~IDi~~~~l~l 388 (432)
..++....++|= ...+-|| ..|+.||.|.=|- ++-+-+
T Consensus 128 l~~~~fPV~a~g~~p~~~~k~~~g~invPV~igGv~V~PGD~V~aD~-dGVvvi 180 (238)
T 3noj_A 128 LRDMGFAVWARAINAQGTVKETLGSVNLPVICGGQLINPGDIVVADD-DGVVVV 180 (238)
T ss_dssp HHHHTCEEEEEEECCCCCBCCSCCEESSCEEETTEEECTTCEEEEET-TEEEEE
T ss_pred HHhCCCCEEEeecCCCCCCCCCeeeeCCCEEECCEEECCCCEEEEcC-CeEEEE
Confidence 011111122221 2345677 7899999999996 555543
No 3
>3c8o_A Regulator of ribonuclease activity A; RRAA, PAO1, RNAse E regulater, hydrolase regulator; HET: PGE PG4; 1.90A {Pseudomonas aeruginosa}
Probab=49.96 E-value=13 Score=33.27 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=60.3
Q ss_pred ceeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC--
Q 014009 275 LYFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 349 (432)
Q Consensus 275 ~~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa-- 349 (432)
.+|-||| ++|++-....++|+. ..+ |||+||-..|....-=+=|++.. +.+.+|+ .++|+||..-=.
T Consensus 30 ~~~~G~A~Tv~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~a~~G~~la~--~a~~~G~---~GiVidG~vRD~~~ 101 (162)
T 3c8o_A 30 DSFGGEIVTIKCFEDNSLVKEQVDK--DGK-GKVLVVDGGGSLRRALLGDMLAE--KAAKNGW---EGIVVYGCIRDVDV 101 (162)
T ss_dssp SCEEEEEEEEECSSCCHHHHHHHTS--CCB-TEEEEEECTTCSSSBSCCHHHHH--HHHHTTB---CEEEEEEEECCHHH
T ss_pred CEEEEEEEEEEEeCCchHHHHHHhc--cCC-CCEEEEECCCCCCccchHHHHHH--HHHHCCC---eEEEecCCCCCHHH
Confidence 3577775 567776777788774 578 99999998777633233344433 3345665 678999843211
Q ss_pred --CCCcce--EEecccc-------cCCCCe----EEeecCCEEEEecC
Q 014009 350 --SHGFVV--GHVCPEA-------QDGGPI----GLIQNGDIINIDVQ 382 (432)
Q Consensus 350 --s~G~~i--gHVsPEA-------a~GGpI----alV~dGD~I~IDi~ 382 (432)
.-++.| .-++|=. ..+-|| ..|+.||.|.=|-+
T Consensus 102 l~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 149 (162)
T 3c8o_A 102 IAQTDLGVQALASHPLKTDKRGIGDLNVAVTFGGVTFRPGEFVYADNN 149 (162)
T ss_dssp HTTSSSEEEEEEECCCBCCCCSCCEESCCEEETTEEECTTSEEEECSS
T ss_pred HhcCCCcEEEeecCCCCCcceeeeeeCCCEEECCEEECCCCEEEEcCC
Confidence 112222 2223322 223454 47999999999974
No 4
>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A
Probab=46.20 E-value=8.1 Score=37.03 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.0
Q ss_pred eEEeecCCEEEEecCCCEEEEecCHHHHHH
Q 014009 368 IGLIQNGDIINIDVQKRRIDVQLTDEEMEE 397 (432)
Q Consensus 368 IalV~dGD~I~IDi~~~~l~l~v~~eel~~ 397 (432)
.-.+++||.|+||-.+|.+-+.-+++++++
T Consensus 209 ~~~~~~G~~v~vDg~~G~v~~~p~~~~~~~ 238 (258)
T 1zym_A 209 TSQVKNDDYLILDAVNNQVYVNPTNEVIDK 238 (258)
T ss_dssp HHHCCTTCEEEECCSSCCEEESCCHHHHHH
T ss_pred HHhCCCCCEEEEECCCCeEEECcCHHHHHH
Confidence 345899999999999999999999988843
No 5
>1j3l_A Demethylmenaquinone methyltransferase; vitamine K2, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Thermus thermophilus} SCOP: c.8.7.1
Probab=45.08 E-value=13 Score=33.36 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=59.9
Q ss_pred ceeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC--
Q 014009 275 LYFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 349 (432)
Q Consensus 275 ~~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa-- 349 (432)
.+|-||| ++|++-....++|+. ..+ |||+||-..|..-.-=+=|++.. ..+.+|+ .++|+||..-=.
T Consensus 29 ~~~~G~A~Tv~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~a~~G~~la~--~a~~~G~---~GiVidG~vRD~~~ 100 (164)
T 1j3l_A 29 ARFAGRVRTLRVFEDNALVRKVLEE--EGA-GQVLFVDGGGSLRTALLGGNLAR--RAWEKGW---AGVVVHGAVRDTEE 100 (164)
T ss_dssp SSEEEEEEEEECSSBCHHHHHHHTS--CCB-TEEEEEECTTCCSSBSCCHHHHH--HHHHTTB---CEEEEESEECCHHH
T ss_pred CEEEEEEEEEEeeCCchHHHHHHhc--cCC-CcEEEEECCCCCCceeehHHHHH--HHHHCCC---eEEEecCcccCHHH
Confidence 3567775 567766677788875 578 99999998777633333344433 3445665 678999843211
Q ss_pred --CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecC
Q 014009 350 --SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQ 382 (432)
Q Consensus 350 --s~G~~i--gHVsPE-------Aa~GGpI----alV~dGD~I~IDi~ 382 (432)
.-++.| .-++|= ...+-|| ..|+.||.|.=|-+
T Consensus 101 i~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 148 (164)
T 1j3l_A 101 LREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADED 148 (164)
T ss_dssp HTTSSSEEEESEECSSBCBCSCCCEESCCEEETTEEECTTCEEEEETT
T ss_pred HhcCCCcEEEeecCCCCCccceeeeeCCCEEECCEEECCCCEEEECCC
Confidence 112222 112221 2234455 47999999999974
No 6
>1q5x_A Regulator of RNAse E activity A; 3-layer sandwich, alpha-beta structure, parallel beta sheet, antiparallel beta sheet, hydrolase inhibitor; 2.00A {Escherichia coli} SCOP: c.8.7.1
Probab=42.98 E-value=9.3 Score=34.09 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=59.3
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
+|-||| ++|++-....++|+ +..+ |||+||-..|+...-=+=|++.. ..+.+|+ .++|+||..-=.
T Consensus 31 ~~~G~A~Tv~~~~dn~~~~~al~--~~~~-G~VlVvd~~g~~~~a~~G~~la~--~a~~~G~---~G~VidG~vRD~~~i 102 (161)
T 1q5x_A 31 SFGGQIITVKCFEDNGLLYDLLE--QNGR-GRVLVVDGGGSVRRALVDAELAR--LAVQNEW---EGLVIYGAVRQVDDL 102 (161)
T ss_dssp SEEEEEEEEECSSBCHHHHHHHT--SCCT-TEEEEEECTTCSSSEEECHHHHH--HHHHTTC---CEEEEEEEECCHHHH
T ss_pred EEEEEEEEEEEeCCcHHHHHHHh--hcCC-CCEEEEECCCCCCceeehHHHHH--HHHHCCC---eEEEecCccCCHHHH
Confidence 466764 55666666777876 5688 99999997776532222244433 3456675 678999843221
Q ss_pred -CCCcce--EEeccccc-------CCCCe----EEeecCCEEEEecC
Q 014009 350 -SHGFVV--GHVCPEAQ-------DGGPI----GLIQNGDIINIDVQ 382 (432)
Q Consensus 350 -s~G~~i--gHVsPEAa-------~GGpI----alV~dGD~I~IDi~ 382 (432)
.-++.| .-++|=.. .+-|| ..|+.||.|.=|-+
T Consensus 103 ~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 149 (161)
T 1q5x_A 103 EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNT 149 (161)
T ss_dssp TTSSSEEEEEEECSSBCBCSCCSEESCCEEETTEEECTTCEEEECSS
T ss_pred hcCCCcEEEeEeccCCCCcCceeeeCCCEEECCEEECCCCEEEEcCC
Confidence 112222 33333221 23444 47999999999874
No 7
>1vi4_A Regulator of ribonuclease acivity A protein 1; structural genomics, unknown function; 1.87A {Vibrio cholerae} SCOP: c.8.7.1
Probab=42.69 E-value=10 Score=34.40 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=60.6
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
+|-||| ++|++-....++|+ +..+ |||+||-..|+.-.-=+=|++. .+.+.+|+ .++|+||..-=.
T Consensus 34 ~~~G~A~Tv~~~~dn~~~~~al~--~~~~-G~VlVvd~~g~~~~A~~G~~la--~~a~~~G~---aGiVidG~vRD~~~l 105 (174)
T 1vi4_A 34 AFWGEIVTVRCYHDNSKVRDVLS--QNGK-GKVLVVDGHGSCHKALMGDQLA--ILAIKNDW---EGVIIYGAVRDVVAM 105 (174)
T ss_dssp CEEEEEEEEECSSCCHHHHHHHT--SCCT-TEEEEEECTTCCSSEEECHHHH--HHHHHTTC---CEEEEEEEECCHHHH
T ss_pred EEEEEEEEEEEeCccHHHHHHHh--ccCC-CEEEEEECCCCCCceehHHHHH--HHHHHCCC---eEEEeccccCCHHHH
Confidence 466764 56666677888886 4678 9999999877663222223333 33455675 678999853221
Q ss_pred -CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecCCCEE
Q 014009 350 -SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQKRRI 386 (432)
Q Consensus 350 -s~G~~i--gHVsPE-------Aa~GGpI----alV~dGD~I~IDi~~~~l 386 (432)
.-++.| .-++|= ...+-|| ..|+.||.|.=|-+ +-+
T Consensus 106 ~~~~~pV~a~g~~p~~~~~~~~g~~nvpV~igGv~V~PGD~I~aD~d-GVv 155 (174)
T 1vi4_A 106 SEMDLGIKALGTSPFKTEKRGAGQVNVTLTMQNQIVEPGDYLYADWN-GIL 155 (174)
T ss_dssp TTSSSEEEEEEECSCCCCCCSCCEESCCEEETTEEECTTSEEEEETT-EEE
T ss_pred HhCCCCeEEeecCCCCCCCCCcceeCCCEEECCEEECCCCEEEEcCC-eEE
Confidence 112221 223332 2234455 46999999999984 443
No 8
>2pcn_A S-adenosylmethionine:2-demethylmenaquinone methyltransferase; beta, beta alpha domain; 1.90A {Geobacillus kaustophilus}
Probab=42.04 E-value=11 Score=33.76 Aligned_cols=100 Identities=22% Similarity=0.320 Sum_probs=58.9
Q ss_pred ceeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC--
Q 014009 275 LYFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG-- 349 (432)
Q Consensus 275 ~~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa-- 349 (432)
.+|-||| ++|++-....++|+. ..+ |||+||-..|+...-=+=|++. ...+.+|+ .++|+||..-=.
T Consensus 28 ~~~~G~A~Tv~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~a~~G~~la--~~a~~~G~---~GiVidG~vRD~~~ 99 (161)
T 2pcn_A 28 RMFSGPIATVDVFEDNVLVREALET--VPP-GTVLVVDGKGSRRVALLGDRLA--QIACERGL---AGVIIHGCIRDSAE 99 (161)
T ss_dssp SCEEEEEEEEECSSBCHHHHHHHHH--SCT-TCEEEEECTTCCSSEEECHHHH--HHHHHTTC---CEEEEEEEESCHHH
T ss_pred CEEEEEEEEEEEecCchHHHHHHHh--cCC-CCEEEEECCCCCCceeehHHHH--HHHHHcCC---cEEEecccccCHHH
Confidence 3567775 566666667777774 578 9999999777653222223333 33456675 678999842211
Q ss_pred --CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecC
Q 014009 350 --SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQ 382 (432)
Q Consensus 350 --s~G~~i--gHVsPE-------Aa~GGpI----alV~dGD~I~IDi~ 382 (432)
.-++.| .-++|= ...+-|| ..|+.||.|.=|-+
T Consensus 100 i~~~~~pv~a~g~~p~~~~~~~~g~~nvpV~~gGv~V~PGD~i~aD~d 147 (161)
T 2pcn_A 100 IGAMPIGVMAIGTCPVKSKKEGKGARDVVLEFGGVRWEPGAYVYADAD 147 (161)
T ss_dssp HTTSSSEEEEEEECCSCCBCSCCSEESCCEEETTEEECTTCEEEEETT
T ss_pred HhcCCCcEEEeecCCCCCccceeeeeCCCEEECCEEECCCCEEEECCC
Confidence 112222 222322 2234455 47999999999974
No 9
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=38.37 E-value=31 Score=26.81 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=32.9
Q ss_pred eeeeeEE-EeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCC
Q 014009 276 YFSGPAL-VFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGP 317 (432)
Q Consensus 276 ~~~GpA~-VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgP 317 (432)
+.+|=|- .|+++++|.+|+.++..-. |..|.+++.=|+..+
T Consensus 55 ~~~g~afV~f~~~~~a~~A~~~~~~~~-g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 55 HSKGFGFVRFTEYETQVKVMSQRHMID-GRWCDCKLPNSKQSQ 96 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHHHSCEEET-TEEEEEECCCTTCCC
T ss_pred CccceEEEEECCHHHHHHHHHcCCeeC-CeEEEEEecCCCCcC
Confidence 4567774 4999999999999876555 889999999888543
No 10
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.58 E-value=29 Score=27.55 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=29.8
Q ss_pred eeeeeEEE-eCCHHHHHHHHh--CCC-CC-------CCCcEEEEeCCCCCCC
Q 014009 276 YFSGPALV-FEGEESMIAAIS--EDP-MS-------FKGKVVVIRGEGPKGG 316 (432)
Q Consensus 276 ~~~GpA~V-F~see~a~~ai~--~g~-i~-------~~gdVvViRyeGPkGg 316 (432)
..+|=|-| |+++++|.+|+. +|. |. . +.-+.++|..|++|
T Consensus 64 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~-~~~l~v~~a~p~~G 114 (114)
T 1x5o_A 64 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP-TEPLLCKFSGPSSG 114 (114)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC-SSCBEEEECCCSCC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC-CCceeEEccCCCCC
Confidence 34676754 999999999985 453 32 5 67899999999864
No 11
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=36.95 E-value=29 Score=37.18 Aligned_cols=89 Identities=25% Similarity=0.232 Sum_probs=56.9
Q ss_pred CceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC--
Q 014009 274 GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG-- 349 (432)
Q Consensus 274 ~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa-- 349 (432)
.-..+|+++|-.+.+|++.. +++ |+|+|.+.--|- -+..| . +-.++||+ |+-|=+
T Consensus 486 ~g~~~G~v~v~~~~~~~~~~-----~~~-g~ILVa~~l~Ps----------~~~~l--~---~~~Givt~~Gg~tSHaAI 544 (587)
T 2e28_A 486 RKSAFGKAVVAKTAEEARQK-----MVD-GGILVTVSTDAD----------MMPAI--E---KAAAIITEEGGLTSHAAV 544 (587)
T ss_dssp SCEECCBEEECSSHHHHHHH-----CCT-TCEEEESCCCGG----------GHHHH--T---TCSEEEESSCCTTSHHHH
T ss_pred CCeEEeeEEEeCCHHHHhhc-----CCC-CeEEEECCCCHH----------HHHHH--H---hcEEEEEcCCCCcCHHHH
Confidence 34578999999999887664 467 889998777665 12223 1 33577887 222211
Q ss_pred ---CCCc-ceEEecccccCCCCeEEeecCCEEEEecCCCEEEEe
Q 014009 350 ---SHGF-VVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQ 389 (432)
Q Consensus 350 ---s~G~-~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~ 389 (432)
+.|+ +|--+ ++-...++|||.|+||-.++.+-+.
T Consensus 545 lAR~lgIPaVvG~------~~~~~~l~~G~~v~vDg~~G~V~~~ 582 (587)
T 2e28_A 545 VGLSLGIPVIVGV------ENATTLFKDGQEITVDGGFGAVYRG 582 (587)
T ss_dssp HHHHHTCCEEECC------TTHHHHSCTTCBEEEETTTTEEEES
T ss_pred HHHHcCCCEEEec------ccHHHhCCCCCEEEEECCCCEEEEc
Confidence 1222 23222 2334568999999999999998654
No 12
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.83 E-value=27 Score=27.06 Aligned_cols=40 Identities=35% Similarity=0.349 Sum_probs=31.2
Q ss_pred eeeeeEEE-eCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 276 YFSGPALV-FEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 276 ~~~GpA~V-F~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
..+|=|-| |+++++|.+||. ++..-. |..|.|+|.=|+..
T Consensus 52 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 52 SSKGFGFVDFNSEEDAKAAKEAMEDGEID-GNKVTLDWAKPKGE 94 (102)
T ss_dssp SEEEEEEEECSSHHHHHHHHHHHTTCEET-TEECEEEECCCCCS
T ss_pred CcCcEEEEEECCHHHHHHHHHHhCCCeEC-CeEEEEEEecCCCC
Confidence 35677755 999999999996 676556 88999998877743
No 13
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.65 E-value=44 Score=25.37 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=30.6
Q ss_pred eeeeE-EEeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCCC
Q 014009 277 FSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGGP 317 (432)
Q Consensus 277 ~~GpA-~VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkGgP 317 (432)
.+|=| +.|+++++|.+|+. ++..-. |..|.|++.=|+..+
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELA-GRPMRVGHVTERLDG 88 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSS-SSCCEEEESSCCCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEEcccccCC
Confidence 45666 45999999999996 776666 888888888777443
No 14
>1nxj_A Probable S-adenosylmethionine:2- demethylmenaquinone methyltransferase; beta/BETA/alpha domain, structural genomics, PSI; HET: TLA; 1.90A {Mycobacterium tuberculosis} SCOP: c.8.7.1
Probab=33.52 E-value=18 Score=33.06 Aligned_cols=99 Identities=21% Similarity=0.299 Sum_probs=58.0
Q ss_pred eeeeeE---EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC---
Q 014009 276 YFSGPA---LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG--- 349 (432)
Q Consensus 276 ~~~GpA---~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa--- 349 (432)
+|-||| ++|++-....++|+. ..+ |||+||-..|+...-=+=|++.. ..+.+|+ .++|+||..-=.
T Consensus 60 ~~~G~A~TV~~~~dn~~~~~al~~--~~~-G~VlVvd~~g~~~~A~~G~~la~--~a~~~G~---aGiVidG~vRD~~ei 131 (183)
T 1nxj_A 60 QFAGPISTVRCFQDNALLKSVLSQ--PSA-GGVLVIDGAGSLHTALVGDVIAE--LARSTGW---TGLIVHGAVRDAAAL 131 (183)
T ss_dssp CEEEEEEEEECSSBCHHHHHHHHS--CCS-SCEEEEECTTCCSSEEECHHHHH--HHHHHTC---CEEEEEEEESCHHHH
T ss_pred EEEEEEEEEEEeCCchHHHHHHHh--cCC-CCEEEEECCCCCCceeeHHHHHH--HHHHCCC---cEEEeccccCCHHHH
Confidence 466764 456666677778874 588 99999998776632222344433 3344565 678999843211
Q ss_pred -CCCcce--EEeccc-------ccCCCCe----EEeecCCEEEEecC
Q 014009 350 -SHGFVV--GHVCPE-------AQDGGPI----GLIQNGDIINIDVQ 382 (432)
Q Consensus 350 -s~G~~i--gHVsPE-------Aa~GGpI----alV~dGD~I~IDi~ 382 (432)
.-++.| .-++|= ...+-|| ..|+.||.|.=|-+
T Consensus 132 ~~l~fPV~a~g~~p~~~~~~~~g~~nvPV~igGv~V~PGD~I~aD~d 178 (183)
T 1nxj_A 132 RGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDD 178 (183)
T ss_dssp TTSSSEEEEEEECCSBCBCSCCSEESCCEEETTEEECTTSEEEECSS
T ss_pred hcCCCcEEEeeeCCCCCCCCccceeCCCEEECCEEECCCCEEEECCC
Confidence 112222 222221 2234455 47999999998874
No 15
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=33.36 E-value=23 Score=29.53 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=16.6
Q ss_pred EeecCCEEEEecCCCEEEE
Q 014009 370 LIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 370 lV~dGD~I~IDi~~~~l~l 388 (432)
.|+.||+|.||...+++.-
T Consensus 62 kV~~GDVI~Id~~sG~V~k 80 (95)
T 2cqa_A 62 KVQAGDVITIDKATGKISK 80 (95)
T ss_dssp TCCTTSEEEEETTTTEEEE
T ss_pred CceeCCEEEEEccCCEEEE
Confidence 3789999999999999864
No 16
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.54 E-value=39 Score=26.12 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=30.0
Q ss_pred eeeeE-EEeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 277 FSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 277 ~~GpA-~VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
.+|=| +.|+++++|.+||. ++..-. |..|.|++.-|+..
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIE-GRAIRLELQGPRGS 93 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEET-TEEEEEEECSSCCC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeC-CeEEEEEEcCCCCC
Confidence 45666 45999999999997 665555 88999998877743
No 17
>2hi6_A UPF0107 protein AF0055; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Archaeoglobus fulgidus} SCOP: c.8.2.3
Probab=29.91 E-value=15 Score=32.57 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=20.4
Q ss_pred CeEEeecCCEEEEecCCCEEEEe
Q 014009 367 PIGLIQNGDIINIDVQKRRIDVQ 389 (432)
Q Consensus 367 pIalV~dGD~I~IDi~~~~l~l~ 389 (432)
|+..+++||.|+||.+++.+.+.
T Consensus 110 ~~~~i~~G~~v~vd~~~G~v~v~ 132 (141)
T 2hi6_A 110 FFEAVKTGDRVVVNADEGYVELI 132 (141)
T ss_dssp HHHHCCTTSEEEEETTTTEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCEEEEe
Confidence 55778999999999999999874
No 18
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=29.46 E-value=9.6 Score=42.08 Aligned_cols=91 Identities=23% Similarity=0.313 Sum_probs=40.8
Q ss_pred CceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC--
Q 014009 274 GLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG-- 349 (432)
Q Consensus 274 ~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa-- 349 (432)
.-..+|+++|..+.+|+ . ++++ |+|+|.+.--|-=-|+| .+-.++||+ |+-|=+
T Consensus 368 ~g~~~G~v~~~~~~~~~-~-----~~~~-g~ILv~~~~~p~~~~~~---------------~~~~givt~~Gg~tSHaAi 425 (794)
T 2ols_A 368 QKVGQGKVRLIKDASEM-D-----SVEA-GDVLVTDMTDPDWEPVM---------------KRASAIVTNRGGRTCHAAI 425 (794)
T ss_dssp CCCCCBCBC---------------------CEEEESCCCGGGSHHH---------------HTCSEEEESSCCTTCHHHH
T ss_pred CCcceEEEEEecCHHHH-H-----hcCC-CeEEEECCCCHHHHHHH---------------hhCcEEEEcCCCcccHHHH
Confidence 33468999865555553 2 3567 88999887776421111 122455665 221111
Q ss_pred ---CCCc-ceEEecccccCCCCeEEeecCCEEEE---ecCCCEEEEecCH
Q 014009 350 ---SHGF-VVGHVCPEAQDGGPIGLIQNGDIINI---DVQKRRIDVQLTD 392 (432)
Q Consensus 350 ---s~G~-~igHVsPEAa~GGpIalV~dGD~I~I---Di~~~~l~l~v~~ 392 (432)
+.|+ ||--+ ++-...+++||.|+| |-.++.+-+.-++
T Consensus 426 var~~giP~vvg~------~~~~~~~~~G~~v~v~c~Dg~~G~v~~g~~~ 469 (794)
T 2ols_A 426 IARELGIPAVVGC------GNATELLKNGQEVTVSCAEGDTGFIYAGLLD 469 (794)
T ss_dssp HTTC---CEEECC------TTHHHHSCSSCCEECCCC--CCCBCEECC--
T ss_pred HHhHCCCCEEEcC------cchhhcccCCCEEEEEecCCCcceEEeCCch
Confidence 1122 22211 122345899999999 9999998776554
No 19
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.33 E-value=48 Score=25.70 Aligned_cols=40 Identities=18% Similarity=0.080 Sum_probs=31.1
Q ss_pred eeeeeEE-EeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 276 YFSGPAL-VFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 276 ~~~GpA~-VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
..+|=|- .|+++++|.+||. ++..-. |..|.|+|.=|+..
T Consensus 55 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 55 QSKGFAFISFHRREDAARAIAGVSGFGYD-HLILNVEWAKPSTN 97 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHTTTCEET-TEECEEEESSCCCC
T ss_pred ceeeEEEEEECCHHHHHHHHHHcCCCeeC-CcEEEEEECCCCCC
Confidence 3567664 5999999999997 665556 88999999887753
No 20
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=29.18 E-value=39 Score=29.27 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=26.6
Q ss_pred eEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCC
Q 014009 280 PALVFEGEESMIAAISEDPMSFKGKVVVIRGEGP 313 (432)
Q Consensus 280 pA~VF~see~a~~ai~~g~i~~~gdVvViRyeGP 313 (432)
++.+|++.+++++.+.+ ..++ ||+|++..-|-
T Consensus 118 ~~~~~~d~~eai~~~~~-~~~~-gDvVLv~Gsg~ 149 (163)
T 3mvn_A 118 PAISADDVDELVMRIVQ-QAKP-NDHILIMSNGA 149 (163)
T ss_dssp CEEEESSHHHHHHHHHH-HCCT-TCEEEEECSSC
T ss_pred CeEEECCHHHHHHHHHH-hCCC-CCEEEEECCCC
Confidence 68899999999988765 4688 99999987664
No 21
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=28.82 E-value=41 Score=25.64 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=31.2
Q ss_pred eeeeeEEE-eCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 276 YFSGPALV-FEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 276 ~~~GpA~V-F~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
..+|=|-| |+++++|.+|+. +|..-. |..|.|++.-|++.
T Consensus 51 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 51 KSKGIAYIEFKSEADAEKNLEEKQGAEID-GRSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHTTEEEET-TEEEEEEECSSSCC
T ss_pred CcceEEEEEECCHHHHHHHHHHhCCCEEC-CeEEEEEEcCCCCC
Confidence 45677755 999999999997 554445 88999999988753
No 22
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.38 E-value=54 Score=24.88 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=29.9
Q ss_pred eeeeE-EEeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCCC
Q 014009 277 FSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGGP 317 (432)
Q Consensus 277 ~~GpA-~VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkGgP 317 (432)
.+|=| +.|+++++|.+|+. ++..-. |..|.|++.=|+..+
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQYLC-NRPITVSYAFKKDSK 89 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCEET-TEECEEEESCCCCCC
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEEC-CEEEEEEEecccCCC
Confidence 34555 45999999999997 565555 889999998777543
No 23
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=26.77 E-value=86 Score=33.74 Aligned_cols=88 Identities=23% Similarity=0.228 Sum_probs=57.0
Q ss_pred CCceeeeeEEEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcC--CCCCCC-
Q 014009 273 EGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTD--GRFSGG- 349 (432)
Q Consensus 273 ~~~~~~GpA~VF~see~a~~ai~~g~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITD--GRfSGa- 349 (432)
..-..+|+++|-++.+|++ .++.+ |+|+|.+.--|- + +..| . +-.++||+ |+-|=+
T Consensus 504 ~~G~v~G~v~vv~~~~da~-----~~~~~-g~ILVa~~l~Ps-------~---~~~l-~----~v~GiVte~Gg~tSHaA 562 (606)
T 3t05_A 504 GRGSVVGTTLVAETVKDLE-----GKDLS-DKVIVTNSIDET-------F---VPYV-E----KALGLITEENGITSPSA 562 (606)
T ss_dssp SSCEEEEEEEECSSGGGGS-----SSCCS-SEEEEESCCCTT-------T---HHHH-T----TSSEEEESSCCSSSHHH
T ss_pred ccceEEEEEEEECChHHHh-----hcCCC-CeEEEECCCCHH-------H---HHHH-H----hhEEEEecCCCcccHHH
Confidence 3456799999999988763 35778 999999887765 1 1222 1 23567776 343322
Q ss_pred ----CCCcc-eEEecccccCCCCeEEeecCCEEEEecCCCEEE
Q 014009 350 ----SHGFV-VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRID 387 (432)
Q Consensus 350 ----s~G~~-igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~ 387 (432)
+.|++ |--+ ++-...++|||.|+||-.++.+-
T Consensus 563 IlAR~lgIPaVvG~------~~a~~~l~~G~~V~vDg~~G~V~ 599 (606)
T 3t05_A 563 IVGLEKGIPTVVGV------EKAVKNISNNVLVTIDAAQGKIF 599 (606)
T ss_dssp HHHHHTTCCEEECC------TTHHHHSCSSCEEEEETTTTEEE
T ss_pred HHHhhCCCCEEEec------ccHHhhCCCCCEEEEECCCCEEE
Confidence 22433 2222 23345689999999999999874
No 24
>3k4i_A Uncharacterized protein; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; 1.69A {Pseudomonas syringae PV}
Probab=26.56 E-value=66 Score=30.54 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=49.7
Q ss_pred CCCCCCcEEEEeCCCCCCCCCCCCCcchhHHHHcCCCCCceEEEcCCCCCCC----CCCcce--EEeccc--------cc
Q 014009 298 PMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGG----SHGFVV--GHVCPE--------AQ 363 (432)
Q Consensus 298 ~i~~~gdVvViRyeGPkGgPGMpEml~~t~al~g~Gl~~~valITDGRfSGa----s~G~~i--gHVsPE--------Aa 363 (432)
...+ |||+||-..|....-=+=|++.. ..+..|+ .++|+||..-=. .-++.| .-++|= ..
T Consensus 80 ~~~~-GdVlVvd~~g~~~~A~~G~lla~--~a~~~G~---aGvVidG~vRD~~ei~~~~fPV~a~g~~p~~~~~~~~~g~ 153 (244)
T 3k4i_A 80 QVPS-GSVIVSSNSGRHDCTVWGDIMTH--FALANGI---KGTVIDGVARDIDTVINCNYPLFSRGRFMQSAKNRTQLKA 153 (244)
T ss_dssp GCCT-TEEEEEECTTCSSSBSCCHHHHH--HHHHHTC---CEEEEESBBSCHHHHHHTTCCEEESCBCCCCSTTTEEEEE
T ss_pred cCCC-CeEEEEECCCCCCeEehHHHHHH--HHHHCCC---eEEEeCCccCCHHHHHhCCCCEEEeecCCCCCCCccccce
Confidence 3578 99999998776533234444433 3345565 678999964211 011111 222221 13
Q ss_pred CCCCe----EEeecCCEEEEecCCCEEEE
Q 014009 364 DGGPI----GLIQNGDIINIDVQKRRIDV 388 (432)
Q Consensus 364 ~GGpI----alV~dGD~I~IDi~~~~l~l 388 (432)
.+-|| ..|+.||+|.=|- ++-+-+
T Consensus 154 ~nvPV~igGv~V~PGD~V~aD~-dGVVvi 181 (244)
T 3k4i_A 154 VQVPLVIDGITIQPGDLMVCDG-SGCVVV 181 (244)
T ss_dssp ESSCEEETTEEECTTCEEEEET-TEEEEE
T ss_pred ecccEEECCEEECCCCEEEEcC-CeEEEE
Confidence 46677 6899999999996 565543
No 25
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=26.40 E-value=42 Score=26.07 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred eeeeeEEE-eCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 276 YFSGPALV-FEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 276 ~~~GpA~V-F~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
..+|=|-| |+++++|.+|+. +|..-. |..|.|++.=|++.
T Consensus 63 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~~~~~ 105 (106)
T 1p27_B 63 YLKGYTLVEYETYKEAQAAMEGLNGQDLM-GQPISVDWCFVRGP 105 (106)
T ss_dssp SEEEEEEEEESCHHHHHHHHHHHTTCBSS-SSBCEEEESEESSC
T ss_pred ceeeEEEEEECCHHHHHHHHHHhcCCEEC-CcEEEEEeecCCCC
Confidence 45677755 999999999996 676556 88889998877753
No 26
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.54 E-value=70 Score=25.14 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=30.9
Q ss_pred eeeeEE-EeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 277 FSGPAL-VFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 277 ~~GpA~-VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
.+|=|- .|+++++|.+||. ++..-. |..|.|++.=|+..
T Consensus 64 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~-g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 64 PKGDATVSYEDPPTAKAAVEWFDGKDFQ-GSKLKVSLARKKPP 105 (113)
T ss_dssp BCSEEEEEBSSHHHHHHHHHHHTTCEET-TEECEEECSSCCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHcCCCccC-CCEEEEEECCCCCC
Confidence 456664 4999999999996 776666 88999999877743
No 27
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=25.21 E-value=28 Score=32.50 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.2
Q ss_pred ceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 014009 354 VVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 391 (432)
Q Consensus 354 ~igHVs-PEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~ 391 (432)
..||.. |-+..=.+|..++.||.|.|....++..-.|+
T Consensus 112 IaGHr~~~~~~~F~~L~~lk~GD~I~v~~~~~~~~Y~V~ 150 (215)
T 4g1h_A 112 LTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVV 150 (215)
T ss_dssp EECCSCCSSCCTTTTGGGCCTTCEEEEECSSCEEEEEEE
T ss_pred EEEecCCCCCchhccHhhCCCCCEEEEEECCEEEEEEEe
Confidence 348986 65555668889999999999999998776654
No 28
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=24.93 E-value=22 Score=29.74 Aligned_cols=36 Identities=36% Similarity=0.421 Sum_probs=23.3
Q ss_pred ceEEecccccCCCCeEEeecCCEEEEecCCCEEEEecCHHHHHHHH
Q 014009 354 VVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERR 399 (432)
Q Consensus 354 ~igHVsPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~~eel~~R~ 399 (432)
.|+.|-|||-.---=--=++||+|++ =|||||++=.
T Consensus 45 ~I~~vmP~aT~TAFeYEDE~gDRITV----------RSDeE~kAMl 80 (106)
T 2npt_A 45 VIGQVLPEATTTAFEYEDEDGDRITV----------RSDEEMKAML 80 (106)
T ss_dssp HHHHHSTTSCCSEEEEECTTSCEEEE----------CSHHHHHHHH
T ss_pred HHHHhCccceeeeeeeccccCCeeEE----------cchHHHHHHH
Confidence 46788898865322223467888775 3788887643
No 29
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.87 E-value=66 Score=25.96 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=28.7
Q ss_pred eeeeE-EEeCCHHHHHHHHhCCCCCCCCcEEEEeCCCCC
Q 014009 277 FSGPA-LVFEGEESMIAAISEDPMSFKGKVVVIRGEGPK 314 (432)
Q Consensus 277 ~~GpA-~VF~see~a~~ai~~g~i~~~gdVvViRyeGPk 314 (432)
.+|=| +.|+++++|.+||....-.. |..|.|.|.-|+
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~~~-g~~l~V~~a~~~ 90 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVGLV-DNPLKISWLEGQ 90 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCBCS-SSBCEEECSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCCC-CCeEEEEEccCC
Confidence 34555 56999999999999865445 778888888776
No 30
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.77A {Sinorhizobium meliloti}
Probab=23.26 E-value=1.6e+02 Score=28.40 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=67.7
Q ss_pred HHHhcCCCCHHHHHHHHHhcCCCCCCCCccchHhhHHHHHHHhcCCCCCC---CCCCCCChhHHH--HHH----------
Q 014009 43 GEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYS---SSIPAEDPLKLD--ECR---------- 107 (432)
Q Consensus 43 g~~~~G~i~~eel~~~e~~acp~~GsC~~mgTANTM~~l~EaLGl~LPgs---a~ipA~~~~r~~--~a~---------- 107 (432)
+++..| +|.+|++++=-.+++-+|--..+.-.+..+-+.+--|+..|-- ...+-...++.. ...
T Consensus 99 ~Al~~G-~T~~EI~Evl~q~~~Y~G~P~a~~a~~~~~ev~~erGi~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~a 177 (269)
T 4g9q_A 99 QALENG-VKPSEISETITHLAYYSGWGKAMATVGPVSEAFAKRGIGQDQLAAVESTPLPLDEEAEAQRATTVGNQFGSVA 177 (269)
T ss_dssp HHHHTT-CCHHHHHHHHHHHHHHTCHHHHHTTHHHHHHHHHHTTCCGGGSCCSSCCCCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHcC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCCCccccCcccccchhHHHHHHHHHHHHHHHHHhC
Confidence 467777 9999999998888887764444433344444444457765422 222221111111 111
Q ss_pred -HHHHHHHHHhhCCCCccccccHHHHH-HHHHHHHhcCCCCchhhhHHHHHHHhCCCcChHHHHHh
Q 014009 108 -LAGKYLLELLRMDLKPRDIITKKSLR-NAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKV 171 (432)
Q Consensus 108 -~ag~~iv~lv~~~i~prdIlT~~af~-NAi~v~~A~GGSTN~vlHL~AIA~eagi~l~l~dfd~i 171 (432)
+-.+.+.+.+.-++=.|+-|+.+.=+ =.|.++.|+|...-.-.|+- .|...| +|-+++.++
T Consensus 178 P~~~~~~~~~~fGdi~~r~~L~~k~ReLitia~l~a~g~~~ql~~Hi~-~Al~~G--~T~eEi~Ev 240 (269)
T 4g9q_A 178 PGLVQYTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVEQITFHLN-KALDNG--LSEEQAAEV 240 (269)
T ss_dssp HHHHHHHHHHTTTTGGGCTTSCHHHHHHHHHHHHHHTTCGGGHHHHHH-HHHHTT--CCHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHhccCccHhHHHHHHHHHHHHCCChHHHHHHHH-HHHHcC--CCHHHHHHH
Confidence 11222333333344444545543322 35677888887766667764 566677 677777665
No 31
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Probab=22.54 E-value=45 Score=30.93 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=29.4
Q ss_pred ceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 014009 354 VVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 391 (432)
Q Consensus 354 ~igHVs-PEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~ 391 (432)
..||.. +-+..=..|..++.||.|.|....++..-.|+
T Consensus 112 IaGH~~~~~~~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~ 150 (212)
T 2w1j_A 112 ITAHTGLPTAKMFTDLTKLKVGDKFYVHNIKEVMAYQVD 150 (212)
T ss_dssp EECCSSCSSCCTTGGGGGCCTTCEEEEECSSCEEEEEEE
T ss_pred EEEecCCCCCccccCHhhCccCCEEEEEECCEEEEEEEE
Confidence 349986 64444467788999999999999888877664
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.31 E-value=70 Score=24.50 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=29.0
Q ss_pred eeeeE-EEeCCHHHHHHHHh-CCCCCCCCcEEEEeCCCCCC
Q 014009 277 FSGPA-LVFEGEESMIAAIS-EDPMSFKGKVVVIRGEGPKG 315 (432)
Q Consensus 277 ~~GpA-~VF~see~a~~ai~-~g~i~~~gdVvViRyeGPkG 315 (432)
.+|=| +.|+++++|.+|+. ++..-. |..|.|++.=|+.
T Consensus 51 ~~g~afV~f~~~~~a~~A~~~~~~~~~-g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVNMHFHDIM-GKKVEVKRAEPRD 90 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHCCCBSS-SCBCEEEECCCCC
T ss_pred CCceEEEEECCHHHHHHHHHhCCCEEC-CeEEEEEECCCCc
Confidence 45666 44999999999997 554445 8888888887773
No 33
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=22.26 E-value=63 Score=27.64 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=36.3
Q ss_pred eEEEcCCCCCCCCCCcc--eEEe--cccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 014009 338 VALLTDGRFSGGSHGFV--VGHV--CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 391 (432)
Q Consensus 338 valITDGRfSGas~G~~--igHV--sPEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~ 391 (432)
++-...+-+-| .|-+ .||. .+-...=..|..++.||.|.|....++..-.|+
T Consensus 40 ~g~~~~t~~pG--~gn~viaGH~~~~~~~~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~ 95 (145)
T 1t2w_A 40 VSFAEENESLD--DQNISIAGHTFIDRPNYQFTNLKAAKKGSMVYFKVGNETRKYKMT 95 (145)
T ss_dssp EEESSTTCCTT--SSEEEEEEECCTTSTTSTTTTGGGCCTTCEEEEEETTEEEEEEEE
T ss_pred cEEecCCCCCC--CceEEEEEecCCCCCCcccCChhhCCCCCEEEEEECCEEEEEEEE
Confidence 44455555666 2433 3999 444444467889999999999998888777664
No 34
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.70 E-value=86 Score=23.67 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=27.7
Q ss_pred eeeEEE-eCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCC
Q 014009 278 SGPALV-FEGEESMIAAIS--EDPMSFKGKVVVIRGEGPK 314 (432)
Q Consensus 278 ~GpA~V-F~see~a~~ai~--~g~i~~~gdVvViRyeGPk 314 (432)
++-|-| |+++++|.+|+. ++..-. |..|.|++.-|+
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~~~ 82 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQ-GKRMHVQLSTSR 82 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEET-TEEEEEEESSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeC-CcEEEEEEccCC
Confidence 345544 999999999995 665556 889999998665
No 35
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=21.66 E-value=40 Score=26.30 Aligned_cols=60 Identities=23% Similarity=0.384 Sum_probs=35.7
Q ss_pred CCCCceEEEcCCCCCCCCCCcceEEecccccCCCCeE---EeecCCEEEEecCCCEEEEecCHHHHHHH
Q 014009 333 GLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIG---LIQNGDIINIDVQKRRIDVQLTDEEMEER 398 (432)
Q Consensus 333 Gl~~~valITDGRfSGas~G~~igHVsPEAa~GGpIa---lV~dGD~I~IDi~~~~l~l~v~~eel~~R 398 (432)
|+|.++.--.|-.+.....|+.|.+|.|. +|-+ .++.||+|. -++...++ ..+.+++.+.
T Consensus 19 ~lG~~l~~g~~~~~~~~~~gv~V~~V~~~----spA~~aG~L~~GD~I~-~vng~~v~-~~~~~~~~~~ 81 (101)
T 2jik_A 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKEN----GAAALDGRLQEGDKIL-SVNGQDLK-NLLHQDAVDL 81 (101)
T ss_dssp CCCEEEEECTTSCSBTTBCCEEEEEECTT----SHHHHHCCCCTTCEEE-EETTEECS-SCCHHHHHHH
T ss_pred CCCEEEeccccCCCccCCCCEEEEEECCC----CHHHHCCCCCCCCEEE-EECCEECC-CCCHHHHHHH
Confidence 55566655445444445678999999874 3332 389999984 45554443 2344554433
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.49 E-value=1e+02 Score=23.59 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.7
Q ss_pred eeeeEE-EeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 277 FSGPAL-VFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 277 ~~GpA~-VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
.+|=|- -|+++++|.+|+. ++..-. |..|.|++.=|+..
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 57 PKGLAYVEYENESQASQAVMKMDGMTIK-ENIIKVAISNSGPS 98 (100)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEESS-SCEEEEEECCCCSC
T ss_pred EEeEEEEEECCHHHHHHHHHHhCCCEEC-CEEEEEEECCCCCC
Confidence 456664 4999999999985 565555 88899998877743
No 37
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=21.36 E-value=61 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=28.9
Q ss_pred eeeeEE-EeCCHHHHHHHHh-CCCCCCCCcEEEEeCCCCCCCCCC
Q 014009 277 FSGPAL-VFEGEESMIAAIS-EDPMSFKGKVVVIRGEGPKGGPGM 319 (432)
Q Consensus 277 ~~GpA~-VF~see~a~~ai~-~g~i~~~gdVvViRyeGPkGgPGM 319 (432)
.+|=|- .|+++++|.+|+. ++..-. |..|.|++.=|+ -|||
T Consensus 47 ~~g~afV~f~~~~~a~~a~~~~g~~~~-g~~l~V~~a~~~-~pg~ 89 (89)
T 3ucg_A 47 PKGFAYIEFSDKESVRTSLALDESLFR-GRQIKVIPKRTN-RPGI 89 (89)
T ss_dssp CCEEEEEEESSTHHHHHHGGGTTCEET-TEECEEEETTTT-SCC-
T ss_pred cceEEEEEECCHHHHHHHHhcCCCEEC-CcEEEEEEccCC-CCCC
Confidence 355564 4999999999984 333444 788888888776 5776
No 38
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.88 E-value=75 Score=24.51 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=30.5
Q ss_pred eeeeeE-EEeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCC
Q 014009 276 YFSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKG 315 (432)
Q Consensus 276 ~~~GpA-~VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkG 315 (432)
..+|=| +.|++.++|.+|+. ++..-. |..|.|+|.=|+-
T Consensus 53 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 53 RSKGFGFVCFSSPEEATKAVTEMNGRIVA-TKPLYVALAQRKE 94 (103)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTCBSS-SSBCEEEECSSCC
T ss_pred CcCEEEEEEECCHHHHHHHHHHhCCCEeC-CcEEEEEEecccc
Confidence 356666 45999999999996 776666 8899999887763
No 39
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.79 E-value=77 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=30.3
Q ss_pred eeeeeE-EEeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCC
Q 014009 276 YFSGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPK 314 (432)
Q Consensus 276 ~~~GpA-~VF~see~a~~ai~--~g~i~~~gdVvViRyeGPk 314 (432)
+.+|=| +.|+++++|.+||. +|..-. |-.|.|.+.=||
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~-gr~l~V~~a~~k 101 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVD-GRTLKASLGTTK 101 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEET-TEEEEEESCCCC
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEEC-CEEEEEEecccc
Confidence 345777 45999999999998 565555 889999998887
No 40
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.76 E-value=96 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=31.0
Q ss_pred eeeeeEEE-eCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCCC
Q 014009 276 YFSGPALV-FEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKGG 316 (432)
Q Consensus 276 ~~~GpA~V-F~see~a~~ai~--~g~i~~~gdVvViRyeGPkGg 316 (432)
..+|=|-| |+++++|.+|+. ++..-. |..|.|++.=|+-.
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVD-GHKLEVRISERATK 90 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEET-TEECEEECSSCSSC
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeC-CeEEEEEEccCCCC
Confidence 45677754 999999999998 666556 88999998877643
No 41
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.40 E-value=1e+02 Score=23.63 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=29.3
Q ss_pred eeeE-EEeCCHHHHHHHHh--CCCCCCCCcEEEEeCCCCCC
Q 014009 278 SGPA-LVFEGEESMIAAIS--EDPMSFKGKVVVIRGEGPKG 315 (432)
Q Consensus 278 ~GpA-~VF~see~a~~ai~--~g~i~~~gdVvViRyeGPkG 315 (432)
+|=| +.|++.++|.+|+. ++..-. |..|.|++.-|+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~-g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 51 RDYAFVHFSNREDAVEAMKALNGKVLD-GSPIEVTLAKPVD 90 (99)
T ss_dssp SSEEEEEESSHHHHHHHHHHHSSEEET-TEEEEEECCCCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCCCEeC-CcEEEEEECCCCC
Confidence 4555 45999999999996 665556 8899999988874
No 42
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=20.17 E-value=48 Score=30.95 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=36.3
Q ss_pred EcCCCCC-CCCCC--cceEEec-ccccCCCCeEEeecCCEEEEecCCCEEEEecC
Q 014009 341 LTDGRFS-GGSHG--FVVGHVC-PEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 391 (432)
Q Consensus 341 ITDGRfS-Gas~G--~~igHVs-PEAa~GGpIalV~dGD~I~IDi~~~~l~l~v~ 391 (432)
..++-|- |+..| +..||.. +-+..=.+|..++.||.|.|....+++.-.|+
T Consensus 100 ~~gt~~P~gG~~gn~VIaGHr~~~~~~~F~~L~~Lk~GD~I~v~~~~~~~~Y~V~ 154 (216)
T 3o0p_A 100 LEGTSLPIGGNSTHTVITAHSGIPDKELFSNLKKLKKGDKFYIQNIKETIAYQVD 154 (216)
T ss_dssp CTTSCCSSCCTTEEEEEECCSCCTTCCTTTTGGGCCTTCEEEEECSSCEEEEEEE
T ss_pred ecCCcCCCCCCCceEEEEeecCCCCCcccccHhhCCcCCEEEEEECCEEEEEEEe
Confidence 3444443 33444 2349986 66666678899999999999999998877665
No 43
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=20.12 E-value=96 Score=33.05 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.7
Q ss_pred EEeecCCEEEEecCCCEEEEecCHHHH
Q 014009 369 GLIQNGDIINIDVQKRRIDVQLTDEEM 395 (432)
Q Consensus 369 alV~dGD~I~IDi~~~~l~l~v~~eel 395 (432)
-.+++||.|+||-.++.+-+.-+++++
T Consensus 210 ~~~~~G~~v~vDg~~G~V~~~p~~~~~ 236 (575)
T 2hwg_A 210 SQVKNDDYLILDAVNNQVYVNPTNEVI 236 (575)
T ss_dssp HHCCTTCEEEEETTTTEEEESCCHHHH
T ss_pred hhCCCCCEEEEECCCCEEEeCCchhhH
Confidence 458999999999999999998887665
Done!