RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014009
(432 letters)
>gnl|CDD|234861 PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.
Length = 552
Score = 735 bits (1901), Expect = 0.0
Identities = 249/431 (57%), Positives = 309/431 (71%), Gaps = 3/431 (0%)
Query: 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
MPG +MA RLN P I VYGG I PG +G +VS F+ G Y +G IS+E+ +
Sbjct: 123 MPGMLMAAARLNVPSIFVYGGPILPGRLKGKDLTLVSVFEAVGAYAAGKISEEELKEIER 182
Query: 61 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
N+CPGAG+CGGM+TANTMA IEA+GMSLP S +IPA D + + R AG+ ++ELL D
Sbjct: 183 NACPGAGSCGGMFTANTMACLIEALGMSLPGSGTIPAVDAERDELAREAGEAVVELLEKD 242
Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
+KPRDI+T+++ NA+ + MALGGSTNAVLHL+AIA G++L++D+F ++S P LAD
Sbjct: 243 IKPRDILTREAFENAIAVDMALGGSTNAVLHLLAIAHEAGVDLTLDDFNRISKRTPHLAD 302
Query: 181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
LKPSGKYVMED+H+ GG PAV++ LL+ G L GDC+TVTGKTLAEN P QD+I
Sbjct: 303 LKPSGKYVMEDLHEAGGIPAVMKELLDAGLLHGDCLTVTGKTLAENLADAP--DPDQDVI 360
Query: 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAISEDPMS 300
RPL NPI TG + +L+GNLAPEG+V KI G + F+GPA VF+ EE + AI +
Sbjct: 361 RPLDNPISPTGGLAILKGNLAPEGAVVKIAGVKPEMFTGPARVFDSEEEAMEAILAGKIK 420
Query: 301 FKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCP 360
G VVVIR EGPKGGPGM EML PTSAI+GAGLG +VAL+TDGRFSGG+ G VGHV P
Sbjct: 421 -AGDVVVIRYEGPKGGPGMREMLAPTSAIVGAGLGDDVALITDGRFSGGTRGLCVGHVSP 479
Query: 361 EAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYIKN 420
EA GGPI L+++GDII ID R +DV ++DEE+ RR W PP K RGVL KY K
Sbjct: 480 EAAVGGPIALVEDGDIITIDAPNRTLDVLVSDEELARRRAAWKPPEPKYKRGVLAKYAKL 539
Query: 421 VQSASNGCVTD 431
V SAS G VTD
Sbjct: 540 VSSASTGAVTD 550
>gnl|CDD|216192 pfam00920, ILVD_EDD, Dehydratase family.
Length = 521
Score = 676 bits (1747), Expect = 0.0
Identities = 237/430 (55%), Positives = 307/430 (71%), Gaps = 3/430 (0%)
Query: 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
+PG +MA RLN P I V GG + PG ++G I F+ G Y +G IS+E+ + +
Sbjct: 93 VPGMLMAAARLNIPSIFVPGGPMLPGKYKGKKISISDVFEAVGAYAAGKISEEELLEIER 152
Query: 61 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
+CPG GACGGM TANTMA EA+G+SLP S++IPA DP +L R AG+ ++EL++ D
Sbjct: 153 AACPGPGACGGMGTANTMACLAEALGLSLPGSATIPAVDPRRLRLAREAGRRIVELVKED 212
Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
LKPRDI+T+K+ NA+V++MA GGSTNAVLHL+AIAR G++L++D+F ++S +VP LAD
Sbjct: 213 LKPRDILTRKAFENAIVVLMATGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLAD 272
Query: 181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDII 240
LKPSGKY+MED+H GG PAV++ LL+ G L GD +TVTG+TL EN P L D+I
Sbjct: 273 LKPSGKYLMEDLHAAGGVPAVMKELLDAGLLHGDALTVTGRTLGENLAEAPILDPDGDVI 332
Query: 241 RPLSNPIKKTGHIQVLRGNLAPEGSVAKITG--KEGLYFSGPALVFEGEESMIAAISEDP 298
RPL NP K G + +L+GNLAP+G+V K++ E F GPA VF+ EE IAAI +D
Sbjct: 333 RPLDNPFKPEGGLAILKGNLAPDGAVIKVSAVSPELRVFEGPARVFDSEEEAIAAI-DDG 391
Query: 299 MSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHV 358
G VVVIR EGPKGGPGMPEML PT+A++GAGLGK+VAL+TDGRFSG S G +GHV
Sbjct: 392 EIEPGDVVVIRYEGPKGGPGMPEMLKPTAALVGAGLGKDVALITDGRFSGASRGPCIGHV 451
Query: 359 CPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKYI 418
PEA GGPI L+++GDII IDV+ R +D+ ++DEE+ RR W PP + RG L KY
Sbjct: 452 SPEAAAGGPIALVRDGDIIEIDVENRTLDLLVSDEELARRRAAWKPPEPRYKRGYLAKYA 511
Query: 419 KNVQSASNGC 428
K V SAS G
Sbjct: 512 KLVGSASEGA 521
>gnl|CDD|223207 COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate
dehydratase [Amino acid transport and metabolism /
Carbohydrate transport and metabolism].
Length = 575
Score = 606 bits (1564), Expect = 0.0
Identities = 220/439 (50%), Positives = 289/439 (65%), Gaps = 9/439 (2%)
Query: 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVL 60
PG +MA RLN P I V GG + G G S F+ G Y +G IS E+ + +
Sbjct: 134 TPGMLMAAARLNIPAIFVSGGPMLAGKVNGEKAGGTSVFEAVGAYAAGKISREELLEIER 193
Query: 61 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
++CP G+C GM TANTM EA+G+SLP S+SIPA + R AG+ ++EL+ D
Sbjct: 194 SACPSPGSCSGMGTANTMNCLAEALGLSLPGSASIPATSAERKALAREAGRRIVELVEED 253
Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
+KPRDI+TKK+ NA+V+ MA GGSTNAVLHL+AIAR G++L++D+F ++S +VP LA
Sbjct: 254 IKPRDILTKKAFENAIVVDMATGGSTNAVLHLLAIAREAGVDLTLDDFDRISRKVPLLAK 313
Query: 181 LKPSG-KYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHL-SEGQD 238
+ P+G KY MED H+ GG PAV++ LL+ G L GD +TVTGKTL EN + + +D
Sbjct: 314 VYPNGGKYDMEDFHRAGGVPAVMKELLKAGLLHGDVLTVTGKTLGENLEGAEIRDTPDRD 373
Query: 239 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITG--KEGLYFSGPALVFEGEESMIAAISE 296
+IRPL NP G + VL+GNLAP+G+V K + E F GPA VF+ +E I AI
Sbjct: 374 VIRPLDNPFSADGGLAVLKGNLAPDGAVIKTSAVDPEIRVFEGPARVFDSQEDAIKAI-L 432
Query: 297 DPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVG 356
D G VVVIR EGPKGGPGMPEML PTSA+ G GLGK+VAL+TDGRFSG S G +G
Sbjct: 433 DGELKAGDVVVIRYEGPKGGPGMPEMLKPTSALKGKGLGKKVALITDGRFSGASRGPSIG 492
Query: 357 HVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPN----KVNRG 412
HV PEA +GGPI L+++GDII ID+ R +D+ +++EE+ RR +W P + + RG
Sbjct: 493 HVSPEAAEGGPIALVRDGDIIRIDIPNRTLDLLVSEEELAARRAEWPAPGDPAWPRYGRG 552
Query: 413 VLYKYIKNVQSASNGCVTD 431
+L Y K V SA G V D
Sbjct: 553 LLAAYRKLVSSADKGAVLD 571
>gnl|CDD|232828 TIGR00110, ilvD, dihydroxy-acid dehydratase. This protein,
dihydroxy-acid dehydratase, catalyzes the fourth step in
valine and isoleucine biosynthesis. It contains a
catalytically essential [4Fe-4S] cluster This model
generates scores of up to 150 bits vs.
6-phosphogluconate dehydratase, a homologous enzyme
[Amino acid biosynthesis, Pyruvate family].
Length = 535
Score = 581 bits (1499), Expect = 0.0
Identities = 230/434 (52%), Positives = 302/434 (69%), Gaps = 4/434 (0%)
Query: 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQ-GHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
PG +MA RLN P I V GG + PGH + G D+VSAF+ GEY +G IS+E+ +
Sbjct: 103 TPGMLMAAARLNIPSIFVTGGPMLPGHTKLGKKIDLVSAFEAVGEYAAGKISEEELEEIE 162
Query: 60 LNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM 119
++CPG G+C GM+TANTMA EA+G+SLP S++ A K + +GK ++EL++
Sbjct: 163 RSACPGCGSCSGMFTANTMACLTEALGLSLPGCSTMLATSAEKKRIAKNSGKRIVELVKK 222
Query: 120 DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLA 179
++KPRDI+TK++ NA+ + MALGGSTN VLHL+AIA G++LS+D+F ++S +VP +A
Sbjct: 223 NIKPRDILTKEAFENAITVDMALGGSTNTVLHLLAIANEAGVDLSLDDFDRLSRKVPHIA 282
Query: 180 DLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDI 239
L PSGKYVMED+H+ GG PAV++ L G L GD +TVTGKTL E + P + EGQD+
Sbjct: 283 SLAPSGKYVMEDLHRAGGIPAVLKELDREGLLHGDTLTVTGKTLGEILEQAPVIPEGQDV 342
Query: 240 IRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEG--LYFSGPALVFEGEESMIAAISED 297
IRPL NP+ + G + +L+GNLAP G+V KI G + F GPA VFE EE + AI
Sbjct: 343 IRPLDNPVHQEGGLAILKGNLAPNGAVVKIAGVDEDMTKFEGPAKVFESEEEALEAI-LG 401
Query: 298 PMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGH 357
+G VVVIR EGPKGGPGMPEML PTSAI G GLGK VAL+TDGRFSGG+ G +GH
Sbjct: 402 GKIKEGDVVVIRYEGPKGGPGMPEMLAPTSAIKGMGLGKSVALITDGRFSGGTRGLCIGH 461
Query: 358 VCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNRGVLYKY 417
V PEA +GGPI L+++GDII ID+ R++D+Q++DEE+ ERR W P + +G L KY
Sbjct: 462 VSPEAAEGGPIALVEDGDIIIIDIPNRKLDLQVSDEELAERRASWKAPEPRYVKGYLAKY 521
Query: 418 IKNVQSASNGCVTD 431
K V SA G V D
Sbjct: 522 AKLVSSADEGAVLD 535
>gnl|CDD|235708 PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.
Length = 571
Score = 399 bits (1027), Expect = e-135
Identities = 182/442 (41%), Positives = 260/442 (58%), Gaps = 23/442 (5%)
Query: 2 PGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVS---AFQVYGEYVSGSISDEQRMNV 58
P +M ++ P I++ GG + G +G + S ++ + E +G I E+ +
Sbjct: 126 PALLMGAASVDLPAIVLSGGPMLNGKHKGE--RLGSGTDVWKYWEELRAGEIDLEEFLEA 183
Query: 59 VLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLR 118
AG C M TA+TMA EA+GMSLP +++IPA D ++ L G+ ++E++
Sbjct: 184 EAGMARSAGTCNTMGTASTMACMAEALGMSLPGNAAIPAVDARRIRMAELTGRRIVEMVH 243
Query: 119 MDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFL 178
DLKP DI+T+++ NA+ + A+GGSTNAV+HLIAIA G+EL +D++ ++ +VP L
Sbjct: 244 EDLKPSDILTREAFENAIRVNAAIGGSTNAVIHLIAIAGRAGVELDLDDWDRIGRDVPVL 303
Query: 179 ADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQD 238
+L+PSG+Y+MED + GG PAV+R L EL L D +TV GKTL EN P D
Sbjct: 304 VNLQPSGEYLMEDFYYAGGLPAVLRELGEL--LHLDALTVNGKTLGENLAGAP--VYNDD 359
Query: 239 IIRPLSNPIKKTGHIQVLRGNLAPEGSVAK--ITGKEGLYFSGPALVFEGEESMIAAISE 296
+IRPL NP+K G I VLRGNLAP+G+V K E L G A+VFEG E A I +
Sbjct: 360 VIRPLDNPLKPEGGIAVLRGNLAPDGAVIKPSAASPELLKHEGRAVVFEGYEDYKARIDD 419
Query: 297 -----DPMSFKGKVVVIRGEGPKGGPGMPE--MLTPTSAIMGAGLGKEVALLTDGRFSGG 349
D + V+V+R GPKG PGMPE + ++ G+ K++ ++D R SG
Sbjct: 420 PDLDVDEDT----VLVLRNAGPKGYPGMPEVGNMPIPKKLLRQGV-KDMVRISDARMSGT 474
Query: 350 SHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKV 409
++G VV HV PEA GGP+ L++ GD I +DV RR+D+ ++DEE+ RR W PPP +
Sbjct: 475 AYGTVVLHVAPEAAAGGPLALVRTGDRIRLDVPARRLDLLVSDEELARRRAAWPPPPPRA 534
Query: 410 NRGVLYKYIKNVQSASNGCVTD 431
RG Y +V A GC D
Sbjct: 535 ERGYQELYRDHVLQADEGCDFD 556
>gnl|CDD|237272 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional.
Length = 596
Score = 350 bits (900), Expect = e-115
Identities = 169/452 (37%), Positives = 251/452 (55%), Gaps = 29/452 (6%)
Query: 1 MPGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTY----DIVSAFQVYGEYVSGSISDEQRM 56
P +MA ++ P I++ GG + G +G I A + +G I E+ M
Sbjct: 134 TPACLMAAATVDLPAIVLSGGPMLDGWHEGERVGSGTVIWKARE---LLAAGEIDYEEFM 190
Query: 57 NVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLEL 116
+V +S P G C M TA+TM + EA+GMSLP ++IPA + GK ++E+
Sbjct: 191 ELVASSAPSVGHCNTMGTASTMNALAEALGMSLPGCAAIPAPYRERGQMAYATGKRIVEM 250
Query: 117 LRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 176
+ DLKP DI+T+++ NA+V+ A+GGSTNA +HLIAIAR G+ELS+D++Q+V ++VP
Sbjct: 251 VWEDLKPSDILTREAFENAIVVNSAIGGSTNAPIHLIAIARHAGVELSLDDWQRVGEDVP 310
Query: 177 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEG 236
L +L+P+GKY+ ED H+ GG PAV+ LL G L GD +TV+G+T+ EN P +
Sbjct: 311 LLVNLQPAGKYLGEDFHRAGGVPAVLAELLRAGLLHGDALTVSGRTIGENIAGAP--APD 368
Query: 237 QDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKIT--------------GKEGLYFSGPAL 282
+D+IRP P+K+ VLRGNL + ++ K + G E F G A+
Sbjct: 369 RDVIRPYDAPLKERAGFLVLRGNLF-DSAIMKTSVISEEFRERYLSEPGDENA-FEGRAV 426
Query: 283 VFEGEESMIAAISEDPMSFKGK-VVVIRGEGPKGGPGMPE--MLTPTSAIMGAGLGKEVA 339
VF+G E A I + + ++VIRG GP G PG E + P +A++ G+ + +
Sbjct: 427 VFDGPEDYHARIDDPALDIDEHCILVIRGAGPVGYPGSAEVVNMQPPAALLKRGI-RSLP 485
Query: 340 LLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERR 399
+ DGR SG S + + PEA GG + L++ GD I ID+ KRR+DV ++DEE+ RR
Sbjct: 486 CIGDGRQSGTSGSPSILNASPEAAVGGGLALLRTGDRIRIDLNKRRVDVLVSDEELARRR 545
Query: 400 RKWTPPPNKVNRGVLYKYIKNVQSASNGCVTD 431
PP Y K+V S G +
Sbjct: 546 AALKPPVPPSQTPWQELYRKHVGQLSTGACLE 577
>gnl|CDD|237104 PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.
Length = 615
Score = 344 bits (884), Expect = e-113
Identities = 186/492 (37%), Positives = 255/492 (51%), Gaps = 70/492 (14%)
Query: 2 PGTIMAMGRLNRPGIMVYGGTIKPG----HFQGHTYDIVSAFQVYGEYVSGSISDEQRMN 57
PG +MA RLN P + V GG ++ G + D+V A V S+SDE
Sbjct: 126 PGMLMAALRLNIPVVFVSGGPMEAGKTKLSDKIIKLDLVDAM-VAA--ADPSVSDEDVAQ 182
Query: 58 VVLNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPA--EDPLKLDECRLAGKYLLE 115
+ ++CP G+C GM+TAN+M EA+G+SLP + S+ A D +L AG+ ++E
Sbjct: 183 IERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSLLATHADRKQLFL--EAGRRIVE 240
Query: 116 LLRM-------DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEF 168
L + + PR I TK + NAM + +A+GGSTN VLHL+A A+ ++ ++ +
Sbjct: 241 LAKRYYEQDDESVLPRSIATKAAFENAMTLDIAMGGSTNTVLHLLAAAQEAEVDFTMADI 300
Query: 169 QKVSDEVPFLADLKPS-GKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAE-- 225
++S +VP L + P+ KY MEDVH+ GG ++ L G L D TV G TL E
Sbjct: 301 DRLSRKVPCLCKVAPNTQKYHMEDVHRAGGIMGILGELDRAGLLHTDVPTVHGLTLGEAL 360
Query: 226 -----------NAKTFPHLSEG---------QD-------------IIRPLSNPIKKTGH 252
K F + G QD IR + + K G
Sbjct: 361 DQWDIMRTQDEAVKEFFRAAPGGIRTTVAFSQDCRWDSLDTDRENGCIRSVEHAYSKDGG 420
Query: 253 IQVLRGNLAPEGSVAKITG--KEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRG 310
+ VL GN+A +G + K G + L F+GPA VFE ++ + AI + G VVVIR
Sbjct: 421 LAVLYGNIAEDGCIVKTAGVDESILKFTGPARVFESQDDAVEAILGGKVK-AGDVVVIRY 479
Query: 311 EGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGL 370
EGPKGGPGM EML PTS + GLGK AL+TDGRFSGG+ G +GHV PEA GG IGL
Sbjct: 480 EGPKGGPGMQEMLYPTSYLKSKGLGKACALITDGRFSGGTSGLSIGHVSPEAASGGAIGL 539
Query: 371 IQNGDIINIDVQKRRIDVQLTDEEMEERRRK--------WTPPPNKVNRGV---LYKYIK 419
+++GDII ID+ R I++ ++DEE+ RR W P + R V L Y
Sbjct: 540 VEDGDIIEIDIPNRSINLLVSDEELAARRAAQEARGDKAWKPKNRE--RKVSFALKAYAA 597
Query: 420 NVQSASNGCVTD 431
SA G V D
Sbjct: 598 LATSADKGAVRD 609
>gnl|CDD|237271 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional.
Length = 577
Score = 335 bits (861), Expect = e-110
Identities = 169/437 (38%), Positives = 256/437 (58%), Gaps = 18/437 (4%)
Query: 2 PGTIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVS-AFQVYGEYVSGSISDEQRMNVVL 60
PG +M + P I + G + G+++G S A++ + E +G+I+ + + +
Sbjct: 130 PGLVMGAISMGLPMIYLPAGPMLRGNYRGKVLGSGSDAWKYWDERRAGNITQAEWLEIEG 189
Query: 61 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMD 120
G C M TA+TM + EA+G++LP +SSIPA D L G+ ++E++ D
Sbjct: 190 GIARSYGTCMTMGTASTMTAIAEALGLTLPGASSIPAADANHQRMAALCGRRIVEMVWED 249
Query: 121 LKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLAD 180
L P I+TK + NA+ + MA G STNAV+HLIA+AR G+ LS+D+ + VP +A+
Sbjct: 250 LTPSQILTKAAFENAITVAMATGCSTNAVIHLIAMARRAGVPLSLDDLDRCGRTVPVIAN 309
Query: 181 LKPSGK-YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAEN---AKTFPHLSEG 236
++PSGK Y+MED GG A+++ L + L D +TVTGKTL +N AK +
Sbjct: 310 IRPSGKTYLMEDFFYAGGLRALMKQLGDK--LHLDALTVTGKTLGDNLEGAKVYND---- 363
Query: 237 QDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITGKEGLYF--SGPALVFEGEESMIAAI 294
D+IRPL NP+ G + VLRGNLAP+G+V K + + GPALVF+ M AAI
Sbjct: 364 -DVIRPLDNPVYAEGSLAVLRGNLAPDGAVIKPAACDPKFLVHRGPALVFDSYPEMKAAI 422
Query: 295 SEDPMSFKGK-VVVIRGEGPKGGPGMPE--MLTPTSAIMGAGLGKEVALLTDGRFSGGSH 351
++ + V+V+R GP+GGPGMPE ML ++ G+ +++ ++D R SG S+
Sbjct: 423 DDENLDVTPDHVMVLRNAGPQGGPGMPEWGMLPIPKKLLKQGV-RDMVRISDARMSGTSY 481
Query: 352 GFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNKVNR 411
G V HV PEA GGP+ L++ GDII +DV RR+ + ++DEE+ RR W PP + R
Sbjct: 482 GACVLHVAPEAYVGGPLALVRTGDIIELDVPARRLHLLVSDEELARRRAAWQPPERRYER 541
Query: 412 GVLYKYIKNVQSASNGC 428
G + + ++V+ A GC
Sbjct: 542 GYGWMFSQHVEQADKGC 558
>gnl|CDD|236189 PRK08211, PRK08211, putative dehydratase; Provisional.
Length = 655
Score = 234 bits (598), Expect = 2e-70
Identities = 152/422 (36%), Positives = 226/422 (53%), Gaps = 45/422 (10%)
Query: 1 MPGTIMAM-GRLNRPGIMVYGG-TIKP--GHFQGHTYDIVSAFQVYGEYVSGSISDEQRM 56
+P +MA+ G + P ++V GG T+ P G G I + + +G +S ++
Sbjct: 166 LPAMMMALAGMHDLPTVLVPGGVTLPPTDGEDAGKVQTIGA------RFANGELSLQEAA 219
Query: 57 NVVLNSC--PGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLL 114
+C PG G C + TA T EA+G++LP+S+ P+ P+ L+ R + + +L
Sbjct: 220 EAGCRACASPGGG-CQFLGTAATSQVVAEALGLALPHSALAPSGQPIWLEIARRSARAVL 278
Query: 115 ELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLEL-SIDEFQKVSD 173
EL + + RDI+T K++ NAMV+ A GGSTN +LH+ AIA + G ++D++ +++
Sbjct: 279 ELEQKGITTRDILTDKAIENAMVVHAAFGGSTNLLLHIPAIAHAAGCRRPTVDDWTRINR 338
Query: 174 EVPFLADLKPSGK--YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFP 231
VP L + P+G + GG P V+ +L LG L D MTVTG+TL EN +
Sbjct: 339 RVPRLVSVLPNGPVYHPTVRAFLAGGVPEVMLHLRALGLLHEDAMTVTGETLGENLDWWE 398
Query: 232 HLSE----------GQDIIRP---LSNPIKK-----TGHIQVLRGNLAPEGSVAKIT--- 270
H SE QD I P + P + T + GN+APEGSV K T
Sbjct: 399 H-SERRARFRQRLREQDGIDPDDVIMPPAQAKARGLTSTVTFPVGNIAPEGSVIKSTAID 457
Query: 271 ----GKEGLYF-SGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTP 325
++G+Y +G A VF E+S IAAI + G ++V+ G GP G GM E
Sbjct: 458 PSVIDEDGVYRHTGRARVFTSEKSAIAAIKHGEIK-AGDILVLIGGGPS-GTGMEETYQI 515
Query: 326 TSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRR 385
TSA+ GK V+L+TD RFSG S G +GHV PEA GGPIG +++GD+I I + +R
Sbjct: 516 TSALKHLSFGKHVSLITDARFSGVSTGACIGHVGPEALAGGPIGKLRDGDLIEIIIDRRT 575
Query: 386 ID 387
++
Sbjct: 576 LE 577
>gnl|CDD|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated.
Length = 603
Score = 225 bits (577), Expect = 9e-68
Identities = 132/367 (35%), Positives = 195/367 (53%), Gaps = 51/367 (13%)
Query: 65 GAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM--DLK 122
G C TAN+ +E MG+ LP SS + PL+ R A + +L L + D
Sbjct: 217 SPGTCTFYGTANSNQMLMEVMGLHLPGSSFVNPGTPLRDALTREAARRVLRLTALGNDYT 276
Query: 123 P-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADL 181
P +++ +K++ N +V ++A GGSTN +HL+A+AR+ G+ L+ D+F +SD VP LA +
Sbjct: 277 PIGEVVDEKAIVNGIVALLATGGSTNHTIHLVAMARAAGIILTWDDFSDLSDVVPLLARV 336
Query: 182 KPSGKYVMEDV---HKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQ- 237
P+G DV GG +IR LL+ G L D TV G L + P L +G+
Sbjct: 337 YPNGP---ADVNHFQAAGGMAFLIRELLDAGLLHEDVNTVAGFGLRRYTQE-PFLEDGEL 392
Query: 238 ------------DIIRPLSNPIKKTGHIQVLRGNLAPEG-SVAKITG--KEGLYFSGPAL 282
D++RP+++P G +++L GNL G +V K++ E PA
Sbjct: 393 VWRDGPEESLDDDVLRPVADPFSPDGGLKLLSGNL---GRAVIKVSAVKPEHRVIEAPAR 449
Query: 283 VFEGEESMIAAISEDPMSFK-GK-----VVVIRGEGPKGGPGMPEM--LTPT-SAIMGAG 333
VF+ +E + AA FK G+ VVV+R +GPK GMPE+ LTP + G
Sbjct: 450 VFDSQEEVQAA-------FKAGELDRDFVVVVRFQGPKAN-GMPELHKLTPPLGVLQDRG 501
Query: 334 LGKEVALLTDGRFSGGSHGFV--VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 391
+VAL+TDGR SG S G V HV PEA DGGPI +++GDII +D + ++V +
Sbjct: 502 F--KVALVTDGRMSGAS-GKVPAAIHVTPEALDGGPIAKVRDGDIIRLDAETGELEVLVD 558
Query: 392 DEEMEER 398
+ E+ R
Sbjct: 559 EAELAAR 565
>gnl|CDD|163260 TIGR03432, yjhG_yagF, putative dehydratase, YjhG/YagF family. This
homolog of dihydroxy-acid dehydratases has an odd,
sparse distribution. Members are found in two
Acidobacteria, two Planctomycetes, Bacillus clausii
KSM-K16, and (in two copies each) in strains K12-MG1655
and W3110 of Escherichia coli. The local context is not
well conserved, but a few members are adjacent to
homologs of the gluconate:H+ symporter (see TIGR00791)
[Unknown function, Enzymes of unknown specificity].
Length = 640
Score = 220 bits (562), Expect = 2e-65
Identities = 150/418 (35%), Positives = 220/418 (52%), Gaps = 37/418 (8%)
Query: 1 MPGTIMAM-GRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
+P +MA+ + P ++V GG P G V + + +G I+ E+
Sbjct: 160 LPAMMMALAATHHLPTVLVPGGVTLPPE-VGEDAGKVQT--IGARFSNGEITLEEAAEAG 216
Query: 60 LNSC--PGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELL 117
+C PG G C + TA T EA+G++LP+S+ P+ P+ LD R + + LEL
Sbjct: 217 CRACASPGGG-CQFLGTAATSQVVAEALGLALPHSALAPSGQPIWLDMARRSARAALELS 275
Query: 118 RMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLEL-SIDEFQKVSDEVP 176
+ L RDI+T K++ NAMV+ A GGSTN +LH+ AIA + G ++D++ +++ +VP
Sbjct: 276 QKGLSTRDILTDKAIENAMVVHAAFGGSTNLLLHIPAIAHAAGCRRPTVDDWTRINRKVP 335
Query: 177 FLADLKPSGK--YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAEN-------- 226
L D P+G + V GG P V+ +L G L D +TVTG+TL EN
Sbjct: 336 RLVDALPNGPVGHPTVRVFLAGGVPEVMLHLRRAGLLHEDVLTVTGETLGENLDWWENSE 395
Query: 227 -AKTFPHLSEGQDIIRP---LSNPIKK-----TGHIQVLRGNLAPEGSVAKIT------- 270
+D + P + +P + T + +GNLAPEGSV K T
Sbjct: 396 RRARMKQRLRERDGVDPDDVIMSPAQAKARGLTSTVTFPKGNLAPEGSVIKSTAIDPSVV 455
Query: 271 GKEGLYF-SGPALVFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAI 329
++G+Y +GPA VF E+S IAAI + G V+V+ G GP G GM E TSA+
Sbjct: 456 DEDGVYRHTGPARVFSSEKSAIAAIKHGKIE-AGDVLVLIGRGPSGT-GMEETYQVTSAL 513
Query: 330 MGAGLGKEVALLTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRID 387
GK VAL+TD RFSG S G +GHV PEA GGPIG +++GD+I I + + ++
Sbjct: 514 KYLSFGKHVALITDARFSGVSTGACIGHVGPEALAGGPIGKVRDGDLIEIIIDRNTLE 571
>gnl|CDD|130264 TIGR01196, edd, 6-phosphogluconate dehydratase. A close homolog,
designated MocB (mannityl opine catabolism), is found in
a mannopine catabolism region of a plasmid of
Agrobacterium tumefaciens. However, it is not essential
for mannopine catabolism, branches within the cluster of
6-phosphogluconate dehydratases (with a short branch
length) in a tree rooted by the presence of other
dehydyatases. It may represent an authentic
6-phosphogluconate dehydratase, redundant with the
chromosomal copy shown to exist in plasmid-cured
strains. This model includes mocB above the trusted
cutoff, although the designation is somewhat tenuous
[Energy metabolism, Entner-Doudoroff].
Length = 601
Score = 200 bits (509), Expect = 6e-58
Identities = 147/427 (34%), Positives = 217/427 (50%), Gaps = 48/427 (11%)
Query: 1 MPG-TIMAMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
+PG I A+ + P + V G + G + Q++ E G + E+ +
Sbjct: 157 VPGLLIGALSFGHLPAVFVPSGPMVSGI---PNKEKAKVRQLFAE---GKVGREELLKSE 210
Query: 60 LNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM 119
+ S G C TAN+ +E MG+ LP +S + PL+ R A K L +
Sbjct: 211 MASYHAPGTCTFYGTANSNQMMMEFMGLHLPGASFVNPNTPLRDALTREAAKRLARMTGN 270
Query: 120 --DLKP-RDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 176
++ P ++I +KS+ NA+V +MA GGSTN +HL+A+AR+ G+ L+ D+F ++SD VP
Sbjct: 271 GGEVLPLGEMIDEKSIVNALVGLMATGGSTNHTMHLVAMARAAGIILNWDDFSELSDLVP 330
Query: 177 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEG 236
LA + P+G + GG P +IR LL+ G L D TV GK L+ K P L G
Sbjct: 331 LLARVYPNGSADVNHFQAAGGLPFLIRELLKAGLLHEDVHTVAGKGLSRYTKE-PFLENG 389
Query: 237 Q-------------DIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITG--KEGLYFSGPA 281
Q DI+RP+ +P G +++L+GNL +V KI+ E PA
Sbjct: 390 QLVWREAPEHSLDTDILRPVDDPFSANGGLKLLKGNLGR--AVIKISAVKPEHRVIEAPA 447
Query: 282 LVFEGEESMIAAISEDPMSFKGK------VVVIRGEGPKGGPGMPEM--LTPTSAIMGAG 333
+VF + ++AA FK V V+R +GPK GMPE+ LTP ++
Sbjct: 448 IVFNDQAEVLAA-------FKAGELERDFVAVVRFQGPKAN-GMPELHKLTPPLGVL-QD 498
Query: 334 LGKEVALLTDGRFSGGSHGFVVG--HVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLT 391
G +VAL+TDGR SG S G V HV PEA GGPI I++GD+I +D ++V +
Sbjct: 499 RGFKVALVTDGRMSGAS-GKVPAAIHVTPEAALGGPIAKIRDGDLIRVDAVNGELNVLVD 557
Query: 392 DEEMEER 398
D E+ R
Sbjct: 558 DAELNAR 564
>gnl|CDD|217849 pfam04023, FeoA, FeoA domain. This family includes FeoA a small
protein, probably involved in Fe2+ transport. This
presumed short domain is also found at the C-terminus of
a variety of metal dependent transcriptional regulators.
This suggests that this domain may be metal-binding. In
most cases this is likely to be either iron or
manganese.
Length = 74
Score = 33.0 bits (76), Expect = 0.036
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L++L P + + P ++R LLELG + G +TV K
Sbjct: 3 LSELPPGESARIVRIR--DDDPELLRRLLELGLVPGTEVTVVRK 44
>gnl|CDD|214896 smart00899, FeoA, This entry represents the core domain of the
ferrous iron (Fe2+) transport protein FeoA found in
bacteria. This domain also occurs at the C-terminus in
related proteins. The transporter Feo is composed of
three proteins: FeoA a small, soluble SH3-domain protein
probably located in the cytosol; FeoB, a large protein
with a cytosolic N-terminal G-protein domain and a
C-terminal integral inner-membrane domain containing two
'Gate' motifs which likely functions as the Fe2+
permease; and FeoC, a small protein apparently
functioning as an [Fe-S]-dependent transcriptional
repressor. Feo allows the bacterial cell to acquire iron
from its environment.
Length = 72
Score = 32.2 bits (74), Expect = 0.072
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L++LKP K + + P ++R LLELG + G +TV K
Sbjct: 3 LSELKPGEKARIVRIR--DEDPELLRRLLELGLVPGTEVTVLRK 44
>gnl|CDD|185097 PRK15175, PRK15175, Vi polysaccharide export protein VexA;
Provisional.
Length = 355
Score = 32.8 bits (74), Expect = 0.37
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 87 MSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGG-- 144
+ +PY+ +IP LD +LA + L R+ L P+ I+T + AMV V G
Sbjct: 113 VQVPYAGTIPVSG---LDVTQLADEIKKRLSRVVLNPQVIVTLTARTGAMVTVEGSGKTG 169
Query: 145 ------STNAVLHLIAIARSV 159
S N + HL+A A +V
Sbjct: 170 RYPLEQSMNRLSHLLATAVAV 190
>gnl|CDD|219733 pfam08163, NUC194, NUC194 domain. This is domain B in the
catalytic subunit of DNA-dependent protein kinases.
Length = 394
Score = 30.9 bits (70), Expect = 1.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 296 EDPMSFKGKVVVIR---GEGPKGGPGMPEMLTPTSAIMGAGLGKEV 338
E P+ K K V IR + P+ L+ S ++ + L +EV
Sbjct: 183 EVPLERKKKYVAIRKEARDAGNSASDSPKYLSSQSYLVDSSLSEEV 228
>gnl|CDD|131893 TIGR02846, spore_sigmaK, RNA polymerase sigma-K factor. The
sporulation-specific transcription factor sigma-K (also
called sigma-27) is expressed in the mother cell
compartment of endospore-forming bacteria such as
Bacillus subtilis. Like its close homolog sigma-E
(sigma-29) (see TIGR02835), also specific to the mother
cell compartment, it must be activated by a proteolytic
cleavage. Note that in Bacillus subtilis (and apparently
also Clostridium tetani), but not in other endospore
forming species such as Bacillus anthracis, the sigK
gene is generated by a non-germline (mother cell only)
chromosomal rearrangement that recombines coding regions
for the N-terminal and C-terminal regions of sigma-K
[Transcription, Transcription factors, Cellular
processes, Sporulation and germination].
Length = 227
Score = 29.7 bits (67), Expect = 2.2
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 92 SSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLH 151
+ S P PL +E + KYL L D + R+++ +++LR IV + V
Sbjct: 23 NGSFP--QPLSEEEEK---KYLDRLKEGDEEARNVLIERNLRLVAHIVKKFSNTGEDVDD 77
Query: 152 LIAIARSVGLELSIDEF 168
LI+I ++GL +ID F
Sbjct: 78 LISIG-TIGLIKAIDSF 93
>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and
metabolism].
Length = 447
Score = 29.9 bits (68), Expect = 2.5
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 125 DIITK--KSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLK 182
DI+ + + +V+V A+GG T+ L+A+A Q+ D L
Sbjct: 24 DIVKEDSEEGVKVVVVVSAMGGVTD---LLVALAEGAESGRDAVAEQRHRDIASELILDP 80
Query: 183 PSGKYVMEDVHKIGGTPAVIRYLLEL 208
+ E + + I L E+
Sbjct: 81 FIAARLAEVIAEFKKVLLGIALLGEV 106
>gnl|CDD|199882 cd02851, E_set_GO_C, C-terminal Early set domain associated with
the catalytic domain of galactose oxidase. E or
"early" set domains are associated with the catalytic
domain of galactose oxidase at the C-terminal end.
Galactose oxidase is an extracellular monomeric enzyme
which catalyzes the stereospecific oxidation of a broad
range of primary alcohol substrates and possesses a
unique mononuclear copper site essential for catalyzing
a two-electron transfer reaction during the oxidation
of primary alcohols to corresponding aldehydes. The
second redox active center necessary for the reaction
was found to be situated at a tyrosine residue. The
C-terminal domain of galactose oxidase may be related
to the immunoglobulin and/or fibronectin type III
superfamilies. These domains are associated with
different types of catalytic domains at either the
N-terminal or C-terminal end and may be involved in
homodimeric/tetrameric/dodecameric interactions.
Members of this family include members of the alpha
amylase family, sialidase, galactose oxidase,
cellulase, cellulose, hyaluronate lyase, chitobiase,
and chitinase, among others.
Length = 103
Score = 28.0 bits (63), Expect = 3.2
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 12 NRPGIMVYGGTIKPGH-----FQGHTYDIVSAFQVYGEYVSGSISDEQRMNVVLNSCPGA 66
RP I T+ G G IV V +V+ S + QR+ + + G
Sbjct: 5 PRPTITSAPKTVGYGQTFTVTVSGPGGGIVRVTLVRPGFVTHSFNMGQRLVKLPVTGSGG 64
Query: 67 GACGGMYTANTMASA 81
T +A
Sbjct: 65 ---DYTVTVTAPPNA 76
>gnl|CDD|235243 PRK04181, PRK04181, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 257
Score = 29.2 bits (66), Expect = 3.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 143 GGSTNAVLHLIAIARSVGLELSIDEF----QKVSDEVPF 177
GGS++A L+ + + L+LS++E KV +V F
Sbjct: 103 GGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGADVAF 141
>gnl|CDD|235689 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 29.6 bits (67), Expect = 3.6
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 26/90 (28%)
Query: 66 AGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDP---------------LKLDECRLAG 110
G G +Y T A ++ G+++ Y + IP +D L + R G
Sbjct: 196 TGGAGRLYGFTTYAHSVTGDGLAIAYRAGIPLKDMEFVQFHPTGLVPSGILITEAARGEG 255
Query: 111 KYLLELL-----------RMDLKPRDIITK 129
YL+ +M+L PRD++++
Sbjct: 256 GYLINKEGERFMKRYAPQKMELAPRDVVSR 285
>gnl|CDD|225351 COG2746, COG2746, Aminoglycoside N3'-acetyltransferase [Defense
mechanisms].
Length = 251
Score = 28.9 bits (65), Expect = 4.2
Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 126 IITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVPFLADLKPSG 185
+ K N V + LG +N LHL EL F+ V L D
Sbjct: 140 PLGKLYDLNGKV--LLLGVDSNTTLHLA--------ELRAKVFKGVVVSGTNLVDGARVW 189
Query: 186 KYVME 190
YV E
Sbjct: 190 VYVRE 194
>gnl|CDD|180266 PRK05803, PRK05803, sporulation sigma factor SigK; Reviewed.
Length = 233
Score = 28.4 bits (64), Expect = 6.9
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 92 SSSIPAEDPLKLDECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGGSTNAVLH 151
++S P PL +E R KYL + D + R+I+ +++LR IV + V
Sbjct: 24 NNSFP--QPLSEEEER---KYLELMKEGDEEARNILIERNLRLVAHIVKKFENTGEDVDD 78
Query: 152 LIAIARSVGLELSIDEFQK 170
LI+I ++GL +I+ F
Sbjct: 79 LISIG-TIGLIKAIESFDA 96
>gnl|CDD|236147 PRK08071, PRK08071, L-aspartate oxidase; Provisional.
Length = 510
Score = 28.8 bits (65), Expect = 6.9
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 57 NVVLNSCPGAGACGGMYTANTMASAIEAMGMSLPY 91
VVL +G CGG+Y + I G+++ Y
Sbjct: 181 YVVL----ASGGCGGLYAFTSNDKTITGDGLAMAY 211
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 28.5 bits (64), Expect = 7.4
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 26/89 (29%)
Query: 67 GACGGMYTANTMASAIEAMGMSLPYSSSIPAEDP---------------LKLDECRLAGK 111
G G +Y T A GM++ + +P +D L + CR G
Sbjct: 165 GGYGRIYKTTTNAHINTGDGMAMALRAGVPLKDMEFVQFHPTGLYPSGILITEGCRGEGG 224
Query: 112 YLLELL-----------RMDLKPRDIITK 129
YL+ +M+L PRD++++
Sbjct: 225 YLVNKNGERFMERYAPEKMELAPRDVVSR 253
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 28.5 bits (64), Expect = 7.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 181 LKPSGKYV-MEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKT 229
L P +Y M +V+ I A+ +L + GF+D + V+ TL E +T
Sbjct: 230 LVPGDRYAQMRNVYFIPSAAALKNWLEKCGFVDVRIVDVSVTTLEEQRRT 279
>gnl|CDD|227117 COG4776, Rnb, Exoribonuclease II [Transcription].
Length = 645
Score = 28.6 bits (64), Expect = 8.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 370 LIQNGDIINIDVQKRRIDVQLTDEEM 395
L + G++++I + RRI ++ +E M
Sbjct: 369 LGEKGEVLDIVAEPRRIANRIVEESM 394
>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 122
Score = 27.2 bits (61), Expect = 8.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 393 EEMEERRRKWTPP 405
EM +R+RKW P
Sbjct: 97 PEMHQRKRKWFSP 109
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 28.0 bits (63), Expect = 8.7
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 61 NSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAE 98
+ C G CG +AN A ++G S +++P
Sbjct: 24 SGCSGCSCCGA--SANDAADPSTSLGYSEEELAAVPEG 59
>gnl|CDD|238188 cd00308, enolase_like, Enolase-superfamily, characterized by the
presence of an enolate anion intermediate which is
generated by abstraction of the alpha-proton of the
carboxylate substrate by an active site residue and is
stabilized by coordination to the essential Mg2+ ion.
Enolase superfamily contains different enzymes, like
enolases, glutarate-, fucanate- and galactonate
dehydratases, o-succinylbenzoate synthase, N-acylamino
acid racemase, L-alanine-DL-glutamate epimerase,
mandelate racemase, muconate lactonizing enzyme and
3-methylaspartase.
Length = 229
Score = 28.1 bits (63), Expect = 8.8
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 154 AIARSVGLELSIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIR 203
A+ R G+ ++ DE D+ +L + + ++GG R
Sbjct: 139 ALRRRTGIPIAADESVTTVDDALEALELG-AVDILQIKPTRVGGLTESRR 187
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.137 0.401
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,634,920
Number of extensions: 2294274
Number of successful extensions: 2353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2287
Number of HSP's successfully gapped: 44
Length of query: 432
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 332
Effective length of database: 6,502,202
Effective search space: 2158731064
Effective search space used: 2158731064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)