RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014009
(432 letters)
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely
alpha-helical, C-terminal domain M beta-sheet
(trefoil-like); 2.49A {Shewanella oneidensis} SCOP:
c.8.2.2 d.334.1.1
Length = 628
Score = 579 bits (1495), Expect = 0.0
Identities = 126/454 (27%), Positives = 213/454 (46%), Gaps = 33/454 (7%)
Query: 1 MPGTIMAMGRL-NRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
+PG ++ + P + V G +K G I F G + Q +
Sbjct: 178 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFA------QGKVDRAQLLEAE 231
Query: 60 LNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM 119
S AG C TAN+ +E MG+ LP SS + +DPL+ ++A K + L +
Sbjct: 232 AQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTEL 291
Query: 120 DLKPR---DIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 176
+ +++ +KS+ N +V ++A GGSTN +H++A AR+ G+ ++ D+F ++SD VP
Sbjct: 292 GTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVP 351
Query: 177 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAK-------- 228
LA + P+G + H GG +I+ LL+ G L D TV G L +
Sbjct: 352 LLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE 411
Query: 229 ----TFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEGSVAKITG--KEGLYFSGPAL 282
P +S +++ ++ P + G +++L+GNL +V K++ + PA+
Sbjct: 412 LRWVDGPTVSLDTEVLTSVATPFQNNGGLKLLKGNLGR--AVIKVSAVQPQHRVVEAPAV 469
Query: 283 VFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMG-AGLGKEVALL 341
V + + + A + + VVV++G+GPK GMPE+ T + G +VAL+
Sbjct: 470 VIDDQNKLDALFKSGALD-RDCVVVVKGQGPKAN-GMPELHKLTPLLGSLQDKGFKVALM 527
Query: 342 TDGRFSGGSHGF-VVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEERRR 400
TDGR SG S H+ PEA DGG I +Q+GD+I +D + + ++D E+ R
Sbjct: 528 TDGRMSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTA 587
Query: 401 KWTPPPNK---VNRGVLYKYIKNVQSASNGCVTD 431
+ + R + N+ S G +
Sbjct: 588 TEIDLRHSRYGMGRELFGVLRSNLSSPETGARST 621
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 2e-10
Identities = 54/288 (18%), Positives = 93/288 (32%), Gaps = 76/288 (26%)
Query: 160 GLEL--SIDEFQKVSDEVPFLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMT 217
G++L + Q V + AD Y + + P L G
Sbjct: 1632 GMDLYKTSKAAQDVWNR----ADNHFKDTYGFSILDIVINNPV------NLTIHFG---G 1678
Query: 218 VTGKTLAEN--AKTFPHLSEGQDIIRPLSNPIKKTGHIQVLRGNLAPEG----------- 264
GK + EN A F + +G+ + I + R +G
Sbjct: 1679 EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS---EKGLLSATQFTQPA 1735
Query: 265 ----SVA--KITGKEGL-----YFSGPALVFEGEESMIAAISEDPMSFKG--KVVVIRGE 311
A + +GL F+G +L GE + +A+++ D MS + +VV RG
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSL---GEYAALASLA-DVMSIESLVEVVFYRGM 1791
Query: 312 -----GPKG--GPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFV--VGHVCPEA 362
P+ G M+ + A +E R + V V +
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 363 QDGGPIGLIQNGDIINID--------VQKRRID-----VQLTDEEMEE 397
Q + GD+ +D ++ ++ID L+ EE+E
Sbjct: 1852 Q------YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 55.8 bits (134), Expect = 2e-08
Identities = 76/452 (16%), Positives = 137/452 (30%), Gaps = 158/452 (34%)
Query: 16 IMVYGGTIKPGHFQGHT--Y--DIVSAFQVYGEYVSGSISDEQRMNVVLNS-CPGAGACG 70
+ ++GG QG+T Y ++ +Q Y V I + L+
Sbjct: 157 VAIFGG-------QGNTDDYFEELRDLYQTYHVLVGDLI---KFSAETLSELIRTTLDAE 206
Query: 71 GMYTANTMASAIEAMGMSL-------------PYSSSIPAEDPLKLDECRLAGKYLLELL 117
++T G+++ Y SIP PL + +LA Y++
Sbjct: 207 KVFTQ----------GLNILEWLENPSNTPDKDYLLSIPISCPL-IGVIQLA-HYVVTAK 254
Query: 118 RMDLKP---RDIITKKSLRNAMVIV---MALGGS----TNAVLHLIAIARSVGLELSIDE 167
+ P R + + + ++ +A S +V I + +G+
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR----- 309
Query: 168 FQKVSDEVPFLADLKPSGKYVMEDVHKIG-GTPAVIRYLLELGFLDGDCM-TVTGKTLAE 225
+ P + L PS ++ED + G P+ M +++ T +
Sbjct: 310 CYEA---YPNTS-LPPS---ILEDSLENNEGVPS--------------PMLSISNLTQEQ 348
Query: 226 --------NAKTFPHLSEGQDIIRPLSNPIKK---TGHIQVLRG-NL------APEGS-V 266
N+ HL G+ + L N K +G Q L G NL AP G
Sbjct: 349 VQDYVNKTNS----HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ 404
Query: 267 AKITGKEGLYFSGPALVF-----------------EGEESMIAAISEDPMSFKG---KVV 306
++I FS L F + + + ++ +SF ++
Sbjct: 405 SRIP------FSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 307 V--------IRGEGPKGGPGMPEMLT-------------PTSAI-MG----AGLGKEVAL 340
V +R + + + T + G +GLG
Sbjct: 459 VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 341 LTDGRFSGGSHGFVVGHVCPEAQDGGPIGLIQ 372
DG G V G + + G Q
Sbjct: 519 NKDGT---GVRVIVAGTL--DINPDDDYGFKQ 545
Score = 34.6 bits (79), Expect = 0.067
Identities = 66/389 (16%), Positives = 112/389 (28%), Gaps = 126/389 (32%)
Query: 88 SLPYSSSIPAED--PLKLDECRLAGKYLL----ELLRMDLKPRDIITKKSLRNA------ 135
LP + A D P E L GK+L + + D + L
Sbjct: 40 ILPEPTEGFAADDEPTTPAE--LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 136 -----MVIVMALGGSTNAVLHLIAIARS--VGLELSIDEFQKVSDEVPFLADLKPSGKYV 188
+ L + ++ + ++ ++ F K S+ L G
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--SALFRAVGEGNA- 154
Query: 189 MEDVHKI----GGTPAVIRYLLEL--------GFLDGDCMTVTGKTLAE----NAKTFPH 232
++ GG Y EL + GD + + +TL+E
Sbjct: 155 -----QLVAIFGGQGNTDDYFEELRDLYQTYHVLV-GDLIKFSAETLSELIRTTLDAEKV 208
Query: 233 LSEGQDIIRPLSNPIKKTGH------------IQVLRGNLAPEGSVAKITGKE----GLY 276
++G +I+ L NP I V++ LA AK+ G Y
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLLGFTPGELRSY 266
Query: 277 FSGPALVFEGEESMIAAI----SEDPMSFKG---KVVVI------RG------------- 310
G +G ++ A+ ++ SF K + + R
Sbjct: 267 LKGATGHSQG---LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 311 --EGPKGGPGMPE-MLTPTSAIMG---AGLGKEVALLTDGRFSGGSH-------G---FV 354
+ + G+P ML +I + V T+ G G V
Sbjct: 324 LEDSLENNEGVPSPML----SISNLTQEQVQDYVN-KTNSHLPAGKQVEISLVNGAKNLV 378
Query: 355 V-GHVCPEAQDG---------GPIGLIQN 373
V G P++ G P GL Q+
Sbjct: 379 VSGP--PQSLYGLNLTLRKAKAPSGLDQS 405
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 55/405 (13%), Positives = 107/405 (26%), Gaps = 136/405 (33%)
Query: 87 MSLPYSSSIPA-EDPLKLD-ECRLAGKYLLELLRMDLKPRDIITKKSLRNAMVIVMALGG 144
Y + ED + +C K + ++ P+ I++K+ + + ++
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDC----KDVQDM------PKSILSKEEIDH----IIMSKD 59
Query: 145 STNAVLHLIAIARSVGLELSIDEFQKVSDEV--PFLAD------LKPSGKYVM--EDVHK 194
+ + L L S E+ + +F + + FL +PS M E +
Sbjct: 60 AVSGTLRLFWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 195 IGGTPAVI---------------RYLLELG-----FLDGDCMTVTGKT-LAENA------ 227
+ V + LLEL +DG + +GKT +A +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKV 176
Query: 228 -KTFPH----LSEGQ-----DIIRPLSN---PIKKTGHIQVLRGNLAPEGSVAKITGKEG 274
L+ ++ L I + + +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 275 LYFSGP---AL-----VFEGEESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPT 326
L S P L V + A + + K+++ T
Sbjct: 237 LLKSKPYENCLLVLLNVQNAK-----AW--NAFNLSCKILLT---------------TRF 274
Query: 327 SAI---MGAGLGKEVALLTDGRFSGGSHGF-----------VVGHVC----PEAQDGGP- 367
+ + A ++L S + E P
Sbjct: 275 KQVTDFLSAATTTHISL------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 368 -IGLI-----------QNGDIINIDVQKRRIDVQLTDEEMEERRR 400
+ +I N +N D I+ L E E R+
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding,
prokaryotic SH3 stenotrophomonus maltophilia, metal
transport; 1.70A {Stenotrophomonas maltophilia}
Length = 85
Score = 32.3 bits (74), Expect = 0.047
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L++L V+E V + A+ R L ELGF+ G+ + + K
Sbjct: 4 LSELPLHTSAVVESVQDLHANDAIARRLRELGFVKGEEVRMVAK 47
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.21
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 30/55 (54%)
Query: 245 NPIKKTGHIQVLRGNL---APEGSVAKITGKEGLYFSGPALVFEGEESMIAAISE 296
+KK L+ +L A + S PAL I A E
Sbjct: 20 QALKK------LQASLKLYADD--------------SAPALA-------IKATME 47
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT,
structural genomics, PSI-2, protein structure
initiative; NMR {Chlorobaculum tepidum}
Length = 105
Score = 30.4 bits (69), Expect = 0.34
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L++LK + V + PAV R L++LG + G + V
Sbjct: 3 LSELKAGDRAE---VTSVAAEPAVRRRLMDLGLVRGAKLKVLRF 43
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; NMR {Clostridium thermocellum atcc 27405}
Length = 81
Score = 29.2 bits (66), Expect = 0.48
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L D K V K+ GT A+ R ++++G G + +
Sbjct: 4 LRDAKCGQTVK---VVKLHGTGALKRRIMDMGITRGCEIYIRKV 44
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Clostridium acetobutylicum}
Length = 86
Score = 29.2 bits (66), Expect = 0.53
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L +++ K V I V R ++++G + G + + GK
Sbjct: 7 LNEVEIKSKVK---VIGIVPESKVRRKIMDMGIVRGTEIYIEGK 47
>2k5i_A Iron transport protein; iron(II) transport protein A, FEOA, ,
structural genomic, structural genomics, PSI-2; NMR
{Clostridium thermocellum}
Length = 162
Score = 29.9 bits (67), Expect = 0.85
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
L+ L P + ++ + + L+ +GF+ G+ + +
Sbjct: 3 LSRLVPGVPAR---IKRLEVSGELHEKLVGMGFVPGEEIEIVQV 43
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 30.7 bits (69), Expect = 1.2
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 104 DECRLAGKYLLELLRMDLKPRDI--IT-----KKSLRNAMVIVMALGGSTNAVLHLIAIA 156
E K +LL+ KP I IT + L M +L + + IA
Sbjct: 654 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLH---TKLYQEVEIA 710
Query: 157 RSVGLELSIDEFQ 169
S+D FQ
Sbjct: 711 -------SVDAFQ 716
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD,
hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A*
2gk7_A 2xzo_A* 2xzp_A
Length = 624
Score = 30.6 bits (69), Expect = 1.2
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 17/73 (23%)
Query: 104 DECRLAGKYLLELLRMDLKPRDI--IT-----KKSLRNAMVIVMALGGSTNAVLHLIAIA 156
E K +LL+ KP I IT + L M +L + + IA
Sbjct: 478 TEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTK---LYQEVEIA 534
Query: 157 RSVGLELSIDEFQ 169
S+D FQ
Sbjct: 535 -------SVDAFQ 540
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.3
Identities = 4/21 (19%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 382 QKRRIDVQLTDEEMEERRRKW 402
Q++R+ D + ++W
Sbjct: 94 QRKRLQEL--DAASKVMEQEW 112
>1tyy_A Putative sugar kinase; ribokinase fold, alpha/beta, transferase;
2.60A {Salmonella typhimurium LT2} SCOP: c.72.1.1 PDB:
1tz3_A* 1tz6_A*
Length = 339
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 20/88 (22%)
Query: 138 IVMALGGSTNAVLHLIAIARSVGLELSID------------EFQKVSDEVPFLAD-LKPS 184
I + + A L R G + D E ++ LA K S
Sbjct: 150 IGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTDEIPELIARSAALASICKVS 209
Query: 185 GKYVMEDVHKIGGTP---AVIRYLLELG 209
+++ ++ G YL +LG
Sbjct: 210 ----ADELCQLSGASHWQDARYYLRDLG 233
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 19/47 (40%)
Query: 295 SEDPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALL 341
S+ + + G+V V+ T A GAGLG+E ALL
Sbjct: 11 SDGKLRYDGRVAVV-----------------TGA--GAGLGREYALL 38
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 29.7 bits (67), Expect = 1.9
Identities = 39/171 (22%), Positives = 52/171 (30%), Gaps = 30/171 (17%)
Query: 65 GAGACGGMYTA-NTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRMDLKP 123
GAG G + A M + + +S + P K DE A + LE R +P
Sbjct: 145 GAGGVGDIVWAPEVMDALLAREDLSGTLYFEVLNPFPDKADEVFAAARTHLERWRRLERP 204
Query: 124 RDIITKKSLRNAMVIVMALGG------STNAVLHLIAIARSVGLELSI------DEFQKV 171
+ + L S + L A GL L I E +
Sbjct: 205 G-------------LRLGLSPHTPFTVSHRLMRLLSDYAAGEGLPLQIHVAEHPTELEMF 251
Query: 172 SDEVPFLADLKPSGKYVMEDVHKIGGTPAV----IRYLLELGFLDGDCMTV 218
L D + Y IG P +RYL ELG L V
Sbjct: 252 RTGGGPLWDNRMPALYPHTLAEVIGREPGPDLTPVRYLDELGVLAARPTLV 302
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta-
transcription regulator, metal binding protein; HET:
GOL; 2.00A {Thermococcus thioreducens}
Length = 77
Score = 27.2 bits (61), Expect = 2.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTV 218
L+++ P G + V I G + L+ +G G + V
Sbjct: 7 LSEMGP-GDKGI--VVNILGGHNARQKLVSMGLTPGATIQV 44
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 29.5 bits (66), Expect = 2.6
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 104 DECRLAGKYLLELLRMDLKPRDI--IT-----KKSLRNAMVIVMALGGSTNAVLHLIAIA 156
E + + +L R +KP I IT + + M + +L + + +A
Sbjct: 656 IEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKD---LYIKVEVA 712
Query: 157 RSVGLELSIDEFQ 169
S+D FQ
Sbjct: 713 -------SVDAFQ 718
>3s6b_A Methionine aminopeptidase; malaria, proteolysis, "PITA bread" fold,
structur genomics, structural genomics consortium, SGC,
hydrolase; 1.95A {Plasmodium falciparum}
Length = 368
Score = 29.2 bits (66), Expect = 2.8
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 371 IQNGDIINIDV 381
+++GDIINID+
Sbjct: 184 LKSGDIINIDI 194
>3hj6_A Fructokinase, FRK; fructose, transferase, carbohydrate ME; 2.80A
{Halothermothrix orenii}
Length = 327
Score = 29.1 bits (66), Expect = 3.0
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 20/88 (22%)
Query: 138 IVMALGGSTNAVLHLIAIARSVGLELSID------------EFQKVSDEVPFLADL-KPS 184
+++ + + + AR G + D + V +E+ AD KPS
Sbjct: 153 FILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPS 212
Query: 185 GKYVMEDVHKIGGTP---AVIRYLLELG 209
++D + G ++ LELG
Sbjct: 213 ----LDDARHLFGPDSPENYVKRYLELG 236
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 29.2 bits (66), Expect = 3.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 21 GTIKPGH-FQGHTYDIVSAFQVYGEY-VSGS 49
G +K +GH +++ Q G VSGS
Sbjct: 106 GELKSPKVLKGHDDHVITCLQFCGNRIVSGS 136
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89,
PSI-2, protein structure initiative; NMR {Pseudomonas
aeruginosa} SCOP: b.34.1.2
Length = 75
Score = 26.8 bits (60), Expect = 3.2
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
++ L+PS Y + + + L +G L G + V
Sbjct: 1 MSALQPSRSYRITGY-SPAISNGYRQRLFSMGLLPGAALRVVRI 43
>3pka_A Methionine aminopeptidase; hydrolase-hydrolase inhibitor complex;
HET: Y02; 1.25A {Mycobacterium tuberculosis} PDB:
3pkb_A* 3pkc_A* 3pkd_A* 3pke_A* 3iu7_A* 3iu8_A* 3iu9_A*
1y1n_A 1yj3_A
Length = 285
Score = 28.7 bits (65), Expect = 3.3
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 371 IQNGDIINIDV 381
I +GDI+NIDV
Sbjct: 122 ITDGDIVNIDV 132
>2b3h_A Methionine aminopeptidase 1; hydrolase, metalloprotease, pitab;
HET: GOL; 1.10A {Homo sapiens} PDB: 2b3k_A 2b3l_A
2gz5_A* 2nq6_A* 2nq7_A* 2g6p_A*
Length = 329
Score = 28.8 bits (65), Expect = 3.4
Identities = 6/11 (54%), Positives = 10/11 (90%)
Query: 371 IQNGDIINIDV 381
+Q GDI+N+D+
Sbjct: 156 LQEGDIVNVDI 166
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 3.5
Identities = 30/147 (20%), Positives = 47/147 (31%), Gaps = 28/147 (19%)
Query: 70 GGMYTANTMASAIEAMG--------MSL-------PYSSSIPAEDPLKLDECRLAG---- 110
G M N +A IE MG M+ P + + P+ D L G
Sbjct: 677 GLMSANNIIAEGIEKMGVRTFSQKEMAFNLLGLLTPEVVELCQKSPVMAD---LNGGLQF 733
Query: 111 ----KYLLELLRMDLKPRDIITKK-SLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSI 165
K LR +L + K S+ A+ + G S +A + I ++L
Sbjct: 734 VPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPRANIQLDF 793
Query: 166 DEFQKVSDEVPFLADLKPSGKYVMEDV 192
E + + G +E V
Sbjct: 794 PELKPYKQVKQIAPA-ELEGLLDLERV 819
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 28.5 bits (64), Expect = 4.0
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 19/45 (42%)
Query: 297 DPMSFKGKVVVIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALL 341
P+ F G+VV++ T A G GLG+ AL
Sbjct: 3 SPLRFDGRVVLV-----------------TGA--GGGLGRAYALA 28
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 28.6 bits (64), Expect = 4.3
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 354 VVGHVCPEAQDGGPIGLIQNGDIINIDV 381
V H P D I ++ GD++ ID+
Sbjct: 92 CVCHFSPLKSDQDYI--LKEGDLVKIDL 117
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical
domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Length = 182
Score = 27.9 bits (62), Expect = 4.6
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 376 IINIDVQKRRIDV---QLTDEEMEERRRKWTPPPNKVNRGVL 414
+I +D +K ID+ +++ EE + K+ +K +L
Sbjct: 72 VIRVDKEKGYIDLSKRRVSPEEAIKCEDKF--TKSKTVYSIL 111
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 28.3 bits (63), Expect = 5.1
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 41 VYGEYVSGSISDEQRMNVVLNSCPGAGACGGMYTANTMASAIEAMGMSL 89
+ Y+ S E+ L G + T + AI A ++L
Sbjct: 49 LLNTYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSS-AILATILAL 96
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane
protein, heme protein, iron sulfur PROT cytochrome B,
oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus
gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A*
1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A*
3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A*
3aec_A* ...
Length = 621
Score = 28.1 bits (63), Expect = 7.0
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 26/87 (29%)
Query: 67 GACGGMYTANTMASAIEAMGMSLPYSSSIPAEDP---------------LKLDECRLAGK 111
G G Y + T A G ++ + +P +D L + CR G
Sbjct: 214 GGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGCLITEGCRGEGG 273
Query: 112 YLL-----------ELLRMDLKPRDII 127
L+ + DL RD++
Sbjct: 274 ILINSQGERFMERYAPVAKDLASRDVV 300
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} SCOP: d.127.1.1 PDB: 2gg0_A* 2gg3_A* 2gg5_A*
2gg7_A* 2gg8_A* 2gg9_A* 2ggb_A* 2ggc_A 2q93_A* 2q95_A*
2q96_A* 1xnz_A* 1mat_A* 2bb7_A* 2evc_A* 2evm_A* 2evo_A*
3mat_A* 1yvm_A* 2mat_A ...
Length = 263
Score = 27.5 bits (62), Expect = 7.1
Identities = 7/11 (63%), Positives = 11/11 (100%)
Query: 371 IQNGDIINIDV 381
+++GDI+NIDV
Sbjct: 87 LKDGDIVNIDV 97
>3mx6_A Methionine aminopeptidase; seattle structural genomics center for
infectious disease, S aminopeptidase, protease,
epidermic typhus; 1.70A {Rickettsia prowazekii} PDB:
3mr1_A
Length = 262
Score = 27.5 bits (62), Expect = 8.0
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 371 IQNGDIINIDV 381
++NGDI+NIDV
Sbjct: 89 LKNGDIVNIDV 99
>3ljs_A Fructokinase; fructokianse, PSI2, NYSGXRC, structural genomics,
protein structure initiative; 1.97A {Xylella fastidiosa
TEMECULA1} PDB: 3lki_A*
Length = 338
Score = 27.6 bits (62), Expect = 8.1
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 22/90 (24%)
Query: 138 IVMALGGSTNAVLHLIAIARSVGLELSID------------EFQKVSDEVPFLAD-LKPS 184
M + A++ G +S D + LAD +K S
Sbjct: 138 NSMTDADIAEVTFEGMRRAQAAGAIVSFDLNFRPMLWPNGENPASRLWKGLSLADVVKLS 197
Query: 185 GKYVMEDVHKIGGTP-----AVIRYLLELG 209
E++ + T AVI+ L +
Sbjct: 198 ----SEELDYLANTLAADANAVIQQLWQGR 223
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water
structu transferase; HET: GTX; 1.30A {Homo sapiens}
SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A*
1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A*
3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A*
1xwg_A 3l0h_A* 1ags_A* ...
Length = 221
Score = 27.5 bits (61), Expect = 8.2
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 187 YVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKTFPHLSEGQDIIRPLSN 245
V D K+ T A++ Y+ L GK + E A ++ D+ +
Sbjct: 56 MVEIDGMKLVQTRAILNYIASKYNLY-------GKDIKERALIDMYIEGIADLGEMILL 107
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif,
SAM, NAD, phosphoserine,
transferase/oxidoreductase/lyase complex; HET: SEP PGE
SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11
c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Length = 457
Score = 27.6 bits (62), Expect = 8.5
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 273 EGLYFSG-PALVFEG-----EESMIAAISEDPMSFKGKVVVIRGEGPKGGPGMPEMLT 324
E + + A + + +P+ +G+VV++ G GPG +LT
Sbjct: 180 EKFFVNDRLAQSLANADEKAVNATTERLFSEPLDHRGEVVLV---G--AGPGDAGLLT 232
>1qxy_A Methionyl aminopeptidase; PITA bread fold, hydrolase; HET: M2C;
1.04A {Staphylococcus aureus} SCOP: d.127.1.1 PDB:
1qxw_A* 1qxz_A*
Length = 252
Score = 27.5 bits (62), Expect = 8.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 371 IQNGDIINIDV 381
I+ GD++NIDV
Sbjct: 84 IREGDLVNIDV 94
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Saccharomyces
cerevisiae} PDB: 2a1a_A* 1q46_A
Length = 175
Score = 27.0 bits (60), Expect = 9.8
Identities = 6/30 (20%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 376 IINIDVQKRRIDV---QLTDEEMEERRRKW 402
++ +D +K ID+ +++ E++ + K+
Sbjct: 72 VLRVDKEKGYIDLSKRRVSSEDIIKCEEKY 101
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.401
Gapped
Lambda K H
0.267 0.0819 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,921,713
Number of extensions: 455257
Number of successful extensions: 1560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 59
Length of query: 432
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 336
Effective length of database: 4,021,377
Effective search space: 1351182672
Effective search space used: 1351182672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)