RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014009
(432 letters)
>d2gp4a2 d.334.1.1 (A:1-418) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 418
Score = 231 bits (591), Expect = 2e-72
Identities = 73/267 (27%), Positives = 124/267 (46%), Gaps = 22/267 (8%)
Query: 1 MPGTIM-AMGRLNRPGIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEQRMNVV 59
+PG ++ A+ + P + V G +K G I F + Q +
Sbjct: 158 VPGLLIGALSFGHLPMLFVPAGPMKSGIPNKEKARIRQQFAQG------KVDRAQLLEAE 211
Query: 60 LNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSIPAEDPLKLDECRLAGKYLLELLRM 119
S AG C TAN+ +E MG+ LP SS + +DPL+ ++A K + L +
Sbjct: 212 AQSYHSAGTCTFYGTANSNQLMLEVMGLQLPGSSFVNPDDPLREALNKMAAKQVCRLTEL 271
Query: 120 ---DLKPRDIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELSIDEFQKVSDEVP 176
+++ +KS+ N +V ++A GGSTN +H++A AR+ G+ ++ D+F ++SD VP
Sbjct: 272 GTQYSPIGEVVNEKSIVNGIVALLATGGSTNLTMHIVAAARAAGIIVNWDDFSELSDAVP 331
Query: 177 FLADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLAENAKT------- 229
LA + P+G + H GG +I+ LL+ G L D TV G L +
Sbjct: 332 LLARVYPNGHADINHFHAAGGMAFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE 391
Query: 230 -----FPHLSEGQDIIRPLSNPIKKTG 251
P +S +++ ++ P + G
Sbjct: 392 LRWVDGPTVSLDTEVLTSVATPFQNNG 418
>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 190
Score = 160 bits (405), Expect = 9e-48
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 253 IQVLRGNLAPEGSVAKITG--KEGLYFSGPALVFEGEESMIAAISEDPMSFKGKVVVIRG 310
+++L+GNL +V K++ + PA+V + + + A + + VVV++G
Sbjct: 2 LKLLKGNLGR--AVIKVSAVQPQHRVVEAPAVVIDDQNKLDALF-KSGALDRDCVVVVKG 58
Query: 311 EGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGF-VVGHVCPEAQDGGPIG 369
+GPK G +VAL+TDGR SG S H+ PEA DGG I
Sbjct: 59 QGPKANGMPELHKLTPLLGSLQDKGFKVALMTDGRMSGASGKVPAAIHLTPEAIDGGLIA 118
Query: 370 LIQNGDIINIDVQKRRIDVQLTDEEMEERRRKWTPPPNK---VNRGVLYKYIKNVQSASN 426
+Q+GD+I +D + + ++D E+ R + + R + N+ S
Sbjct: 119 KVQDGDLIRVDALTGELSLLVSDTELATRTATEIDLRHSRYGMGRELFGVLRSNLSSPET 178
Query: 427 GCVTD 431
G +
Sbjct: 179 GARST 183
>d1cx1a_ b.18.1.14 (A:) Cellulose-binding domain of cellulase C
{Cellulomonas fimi [TaxId: 1708]}
Length = 153
Score = 31.0 bits (69), Expect = 0.15
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 332 AGLGKEVALLTDGRFSGGSHG-FVVGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQL 390
A L EV LL F+ + G P DG + G D V +
Sbjct: 1 ASLDSEVELLPHTSFAESLGPWSLYGTSEPVFADGRMCVDLPGGQGNPWDAGLVYNGVPV 60
Query: 391 TD 392
+
Sbjct: 61 GE 62
>d2h3ja1 b.34.1.2 (A:1-75) Hypothetical protein PA4359 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 75
Score = 28.9 bits (65), Expect = 0.20
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 178 LADLKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
++ L+PS Y + + + L +G L G + V
Sbjct: 1 MSALQPSRSYRITGYSP-AISNGYRQRLFSMGLLPGAALRVVRI 43
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 29.0 bits (63), Expect = 1.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 21 GTIKPGH-FQGHTYDIVSAFQVYGEY-VSGS 49
G +K +GH +++ Q G VSGS
Sbjct: 4 GELKSPKVLKGHDDHVITCLQFCGNRIVSGS 34
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA
{Klebsiella pneumoniae [TaxId: 573]}
Length = 75
Score = 26.2 bits (58), Expect = 2.3
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 181 LKPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGK 221
P + + + +PA + LL LG L G V
Sbjct: 3 FTPDSAWKITGFSR-DISPAYRQKLLSLGMLPGSSFHVVRV 42
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 304
Score = 27.9 bits (61), Expect = 2.4
Identities = 19/103 (18%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 125 DIITKKSLRNAMVIVMALGGSTNAVLHLIAIARSVGLELS--IDEFQKVSDE-VPFLADL 181
D+I + ++++ A+G +TN +L A S G+ + I+E + + + + +L
Sbjct: 25 DLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKEL 84
Query: 182 KPSGKYVMEDVHKIGGTPAVIRYLLELGFLDGDCMTVTGKTLA 224
++ + ++ I + EL D + G+ L+
Sbjct: 85 NIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLS 127
>d1p5ta_ b.55.1.2 (A:) Docking protein 1, Dok1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 26.4 bits (58), Expect = 2.6
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 106 CRLAGKYLLELLRMDLKPRDIITKKSLRNAMV 137
C L G Y+L + L + + + ++
Sbjct: 18 CGLQGSYILRVEAEKLTLLTLGAQSQILEPLL 49
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693
{Streptococcus mutans [TaxId: 1309]}
Length = 84
Score = 25.5 bits (56), Expect = 4.4
Identities = 3/28 (10%), Positives = 15/28 (53%)
Query: 372 QNGDIINIDVQKRRIDVQLTDEEMEERR 399
+ + +V+ ++L ++++++ R
Sbjct: 48 SQEEKEHFEVESNGKHLELINDKVKDGR 75
>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 141
Score = 26.1 bits (56), Expect = 4.9
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 355 VGHVCPEAQDGGPIGLIQNGDIINIDVQKRRIDVQLTDEEMEER 398
+G + +D G+I D++ + L E+ +E+
Sbjct: 104 IGSLLILNKDNTIRGIITERDLL------IALHHILVMEKFKEK 141
>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica
napus) [TaxId: 3708]}
Length = 297
Score = 26.3 bits (56), Expect = 8.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 298 PMSFKGKVVVIRGEGPKGGPG 318
P+ +GK I G G G
Sbjct: 3 PIDLRGKRAFIAGIADDNGYG 23
>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of
estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 302
Score = 26.1 bits (57), Expect = 8.8
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 298 PMSFKGKVVVIRG 310
P+ F G+VV++ G
Sbjct: 2 PLRFDGRVVLVTG 14
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 26.0 bits (56), Expect = 9.0
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 285 EGEESMIAAISEDPMSFK 302
+G + +++E P +
Sbjct: 13 DGINQVQCSVAEYPEAIT 30
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha,
eIF2alpha, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 86
Score = 24.6 bits (53), Expect = 10.0
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 348 GGSHGFVVGHVCPEAQDGGPIGLIQNGD-----IINIDVQKRRIDVQL 390
G ++ + LI+ G +I +D +K ID+
Sbjct: 37 NNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSK 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.401
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,641,778
Number of extensions: 80024
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 29
Length of query: 432
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,199,356
Effective search space: 412578464
Effective search space used: 412578464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)