Query 014010
Match_columns 432
No_of_seqs 237 out of 2456
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 03:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 8.5 1.2E+03 0.041 22.0 28.6 52 104-155 132-186 (491)
2 3ouf_A Potassium channel prote 6.1 8.4E+02 0.029 18.5 5.2 35 378-413 46-80 (97)
3 2jln_A MHP1; hydantoin, transp 5.9 1.4E+03 0.046 22.8 8.1 16 134-149 409-424 (501)
4 3eff_K Voltage-gated potassium 5.4 6.1E+02 0.021 20.5 4.2 36 378-414 54-89 (139)
5 3j1r_A Archaeal adhesion filam 4.4 6.2E+02 0.021 15.1 2.4 16 104-119 9-24 (26)
6 2k1a_A Integrin alpha-IIB; sin 4.3 3.1E+02 0.011 18.3 1.1 24 170-193 7-30 (42)
7 3rlb_A THIT; S-component, ECF 4.2 1.4E+03 0.047 20.0 5.8 33 394-430 118-150 (192)
8 3p5n_A RIBU, riboflavin uptake 4.2 1.1E+03 0.037 20.2 5.2 33 394-426 110-142 (189)
9 2l8s_A Integrin alpha-1; trans 4.0 2.9E+02 0.0098 19.6 0.9 24 171-194 7-30 (54)
10 2knc_A Integrin alpha-IIB; tra 3.9 7.9E+02 0.027 17.2 3.1 21 394-414 13-33 (54)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=8.51 E-value=1.2e+03 Score=21.95 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHH---HHhcchhhhhcCCChhHHHHHHHHHHHHHHHHHHHh
Q 014010 104 LPFCTGFAAGCMIWMV---IAEVLPDAFKEASPTPVASAATISVAFMEALSTLFQ 155 (432)
Q Consensus 104 l~~llafAaG~mL~va---~~eLlPea~~~~~~~~~~l~~l~G~~l~~ll~~~l~ 155 (432)
..++.|++.|....++ ..|..|+..+.........+...|.++...+.....
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 4677888888766554 467777655432222234455666666666655443
No 2
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=6.05 E-value=8.4e+02 Score=18.46 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=18.6
Q ss_pred HHhHhhhhhhhhccCcchHHHHHHHHHHHHHHHHHH
Q 014010 378 LPSFGRIVKRAASLDTRKGSCGLIFGVGFATLCLTC 413 (432)
Q Consensus 378 yi~~~ellPe~~~~~~~~~~~~~~~G~~l~~~~l~~ 413 (432)
-+...|+.|..... +.......+.|+.++......
T Consensus 46 TvGyGdi~P~t~~g-r~~~~~~~~~G~~~~~~~i~~ 80 (97)
T 3ouf_A 46 TVGYGDFSPQTDFG-KIFTILYIFIGIGLVFGFIHK 80 (97)
T ss_dssp TCCCCSSCCCSHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCccH-HHHHHHHHHHHHHHHHHHHHH
Confidence 44555777754332 334444556676665555443
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=5.93 E-value=1.4e+03 Score=22.81 Aligned_cols=16 Identities=6% Similarity=-0.097 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 014010 134 TPVASAATISVAFMEA 149 (432)
Q Consensus 134 ~~~~l~~l~G~~l~~l 149 (432)
+....+.++|+++...
T Consensus 409 ~~a~~a~~~G~~~~~~ 424 (501)
T 2jln_A 409 WVALAVYAVALAVSFL 424 (501)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456677777776654
No 4
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=5.42 E-value=6.1e+02 Score=20.45 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=19.0
Q ss_pred HHhHhhhhhhhhccCcchHHHHHHHHHHHHHHHHHHH
Q 014010 378 LPSFGRIVKRAASLDTRKGSCGLIFGVGFATLCLTCT 414 (432)
Q Consensus 378 yi~~~ellPe~~~~~~~~~~~~~~~G~~l~~~~l~~~ 414 (432)
-|...|+.|..... +....+..+.|+.++......+
T Consensus 54 TvGyGd~~P~t~~~-r~~~~~~~~~G~~~~~~~~~~i 89 (139)
T 3eff_K 54 TVGYGDLYPVTLWG-RLVAVVVMVAGITSFGLVTAAL 89 (139)
T ss_dssp TCCCSSSCCCSSHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCCcCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 44555777754322 2344455566666665555443
No 5
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=4.40 E-value=6.2e+02 Score=15.09 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHH
Q 014010 104 LPFCTGFAAGCMIWMV 119 (432)
Q Consensus 104 l~~llafAaG~mL~va 119 (432)
+-++.+.++++++|.=
T Consensus 9 lLIviav~aaVllylW 24 (26)
T 3j1r_A 9 LLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566788888888763
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=4.26 E-value=3.1e+02 Score=18.34 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=17.7
Q ss_pred hhhhhhcccchhhHHHHHHHhhhh
Q 014010 170 FVSLLFGLGPLLGGIVLLAFAHAF 193 (432)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~~~~~ 193 (432)
..++|....+.++|.++..++--.
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~ 30 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLA 30 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888887765443
No 7
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=4.16 E-value=1.4e+03 Score=19.99 Aligned_cols=33 Identities=9% Similarity=0.004 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCc
Q 014010 394 RKGSCGLIFGVGFATLCLTCTKLVCLHTPYCNSAPEA 430 (432)
Q Consensus 394 ~~~~~~~~~G~~l~~~~l~~~~~~~~~~~~~~~~~~~ 430 (432)
....++.++|..+++++-++..++- |-+-|||-
T Consensus 118 ~~~~lg~~ig~~~r~~~~~isgvvf----f~~yaP~g 150 (192)
T 3rlb_A 118 APVLLGTFVAVLLKYFFHFIAGIIF----WSQYAWKG 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----CGGGCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHhhCccc
Confidence 3457788888888888888877744 44446763
No 8
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=4.16 E-value=1.1e+03 Score=20.22 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 014010 394 RKGSCGLIFGVGFATLCLTCTKLVCLHTPYCNS 426 (432)
Q Consensus 394 ~~~~~~~~~G~~l~~~~l~~~~~~~~~~~~~~~ 426 (432)
+...++.++|..+|.++..+..|..+.-.|-+.
T Consensus 110 ~~~~~~~i~G~~~~~i~~~~~n~~~~~ply~~~ 142 (189)
T 3p5n_A 110 KSLITGLIIATIVMTIVLSILNYFVLLPLYGMI 142 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888777776554334443
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.00 E-value=2.9e+02 Score=19.61 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=18.3
Q ss_pred hhhhhcccchhhHHHHHHHhhhhc
Q 014010 171 VSLLFGLGPLLGGIVLLAFAHAFS 194 (432)
Q Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~ 194 (432)
.++|....+.++|.++..++--..
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888988877765544
No 10
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.93 E-value=7.9e+02 Score=17.25 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHHHHHHHHH
Q 014010 394 RKGSCGLIFGVGFATLCLTCT 414 (432)
Q Consensus 394 ~~~~~~~~~G~~l~~~~l~~~ 414 (432)
+....++++|+++.++..+++
T Consensus 13 wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766555444
Done!