Query 014010
Match_columns 432
No_of_seqs 237 out of 2456
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 03:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014010.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014010hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 4.2 2.9E+02 0.021 17.2 2.6 17 366-382 18-35 (45)
2 d1v54d_ f.23.1.1 (D:) Mitochon 2.3 9.4E+02 0.068 18.2 4.5 16 378-393 58-73 (144)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 1.7 7.5E+02 0.055 13.5 2.4 14 105-118 13-26 (32)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 1.6 2.1E+03 0.15 18.4 9.3 21 277-297 180-200 (472)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 1.6 8.8E+02 0.064 13.8 3.1 18 397-414 6-23 (34)
6 d1l7va_ f.22.1.1 (A:) ABC tran 1.4 2.1E+03 0.16 17.6 8.3 48 76-124 60-107 (324)
7 d2r6gf1 e.70.1.1 (F:13-260) Ma 1.3 2E+03 0.15 17.3 7.3 20 99-118 25-44 (248)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 1.3 1.4E+03 0.11 15.1 4.9 34 379-413 55-88 (103)
9 d2np5a2 a.121.1.1 (A:78-195) T 1.1 9.5E+02 0.069 16.5 2.3 15 16-30 71-85 (118)
10 d1flca2 c.23.10.2 (A:1-150,A:3 1.1 5.7E+02 0.041 21.4 0.9 11 414-424 172-182 (271)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.21 E-value=2.9e+02 Score=17.20 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhh-HHhHh
Q 014010 366 LDHVMVFACGGL-LPSFG 382 (432)
Q Consensus 366 ~~~~la~aaG~~-yi~~~ 382 (432)
..+...+++|.| ||...
T Consensus 18 ~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 18 AGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhheeC
Confidence 445667778888 98865
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.26 E-value=9.4e+02 Score=18.20 Aligned_cols=16 Identities=6% Similarity=-0.051 Sum_probs=11.7
Q ss_pred HHhHhhhhhhhhccCc
Q 014010 378 LPSFGRIVKRAASLDT 393 (432)
Q Consensus 378 yi~~~ellPe~~~~~~ 393 (432)
|+++.+-.||......
T Consensus 58 risF~~t~ae~~~p~g 73 (144)
T d1v54d_ 58 RLKFKESFAEMNRSTN 73 (144)
T ss_dssp HHHCSSCHHHHTCCCS
T ss_pred HHHhccccccccCCCC
Confidence 7888888888765533
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.72 E-value=7.5e+02 Score=13.48 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHH
Q 014010 105 PFCTGFAAGCMIWM 118 (432)
Q Consensus 105 ~~llafAaG~mL~v 118 (432)
+...+++.|++..+
T Consensus 13 alffgiavgiifai 26 (32)
T d2e74e1 13 ALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhheeeE
Confidence 44555556655544
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=1.59 E-value=2.1e+03 Score=18.40 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhhHHHHHh
Q 014010 277 SFLSCGAVALHALAEGLALGV 297 (432)
Q Consensus 277 ~~~l~~al~lH~~~EGlaiG~ 297 (432)
.++.++++.+=++|||+.+-+
T Consensus 180 ~~~~ai~l~V~~iPEgLp~~v 200 (472)
T d1wpga4 180 YFKIAVALAVAAIPEGLPAVI 200 (472)
T ss_dssp HHHHHHHHHHHHSCTTHHHHH
T ss_pred HHHHHHHHHHHhChhhHHHHH
Confidence 355667777788888888765
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.56 E-value=8.8e+02 Score=13.75 Aligned_cols=18 Identities=11% Similarity=0.121 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014010 397 SCGLIFGVGFATLCLTCT 414 (432)
Q Consensus 397 ~~~~~~G~~l~~~~l~~~ 414 (432)
+.+.+.|..++.+.-.++
T Consensus 6 lv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeee
Confidence 456788888877765554
No 6
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=1.37 E-value=2.1e+03 Score=17.63 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=29.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhcc
Q 014010 76 MLWSIITSLPQPIVAVPSFICADAFNKFLPFCTGFAAGCMIWMVIAEVL 124 (432)
Q Consensus 76 ~l~~~l~~l~t~lGalig~~~~~~~~~~l~~llafAaG~mL~va~~eLl 124 (432)
.+.+.+.|.+..+.+.+--... .|+-.-+.++|+.+|.-+.++..-++
T Consensus 60 ~l~a~l~Ga~La~sG~~lQ~~~-rNpLA~P~ilGissGA~l~~v~~~~~ 107 (324)
T d1l7va_ 60 TLAVLLVGAALAISGAVMQALF-ENPLAEPGLLGVSNGAGVGLIAAVLL 107 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TCTTCCTTTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCCCchHHHhhhHHHHHHHHHHHh
Confidence 4445555555555554444333 25566778888888888877775554
No 7
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=1.35 E-value=2e+03 Score=17.26 Aligned_cols=20 Identities=5% Similarity=0.069 Sum_probs=10.0
Q ss_pred hhhhhhhHHHHHHHHHHHHH
Q 014010 99 AFNKFLPFCTGFAAGCMIWM 118 (432)
Q Consensus 99 ~~~~~l~~llafAaG~mL~v 118 (432)
..+.+...++......+.|+
T Consensus 25 ~~~~~~a~~~~~~~~~~~~v 44 (248)
T d2r6gf1 25 QGEYLFAITTLILSSAGLYI 44 (248)
T ss_dssp GGCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHheEEE
Confidence 34445555555555554444
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.27 E-value=1.4e+03 Score=15.07 Aligned_cols=34 Identities=9% Similarity=0.029 Sum_probs=17.7
Q ss_pred HhHhhhhhhhhccCcchHHHHHHHHHHHHHHHHHH
Q 014010 379 PSFGRIVKRAASLDTRKGSCGLIFGVGFATLCLTC 413 (432)
Q Consensus 379 i~~~ellPe~~~~~~~~~~~~~~~G~~l~~~~l~~ 413 (432)
+...|+.|..... +....+..+.|+.++.+....
T Consensus 55 vGYGDi~P~t~~g-r~~~~~~~~~Gi~~~~~~~~~ 88 (103)
T d1r3jc_ 55 VGYGDLYPVTLWG-RCVAVVVMVAGITSFGLVTAA 88 (103)
T ss_dssp CCCSSSCCCSHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccccCChhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3334777754332 233455566676666554443
No 9
>d2np5a2 a.121.1.1 (A:78-195) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=1.15 E-value=9.5e+02 Score=16.52 Aligned_cols=15 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHhhhHHHHHH
Q 014010 16 IGIMTLHSFGEGSGV 30 (432)
Q Consensus 16 ~ial~lHs~~eGlai 30 (432)
..+..+|++.||+.+
T Consensus 71 ~~A~~L~aliDGL~~ 85 (118)
T d2np5a2 71 TRAALLLATVDGLAL 85 (118)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHH
No 10
>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of haemagglutinin-esterase-fusion glycoprotein HEF1 {Influenza C virus [TaxId: 11552]}
Probab=1.14 E-value=5.7e+02 Score=21.39 Aligned_cols=11 Identities=45% Similarity=0.966 Sum_probs=0.0
Q ss_pred HHHhhhcCCCC
Q 014010 414 TKLVCLHTPYC 424 (432)
Q Consensus 414 ~~~~~~~~~~~ 424 (432)
++.+|+-.|||
T Consensus 172 ~a~AC~q~PYC 182 (271)
T d1flca2 172 VDQACLSTPGC 182 (271)
T ss_dssp HHHHHHTSTTE
T ss_pred HHHHhccCCeE
Done!