BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014012
         (432 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
 pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
          Length = 555

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 368 SNLIPAYAYSTISFQKRQALVNYFENNRAGITVFGFTLDRSTLHTIFGIQLSLVL 422
           +N+   Y  +T + Q RQAL  +F+N   G+ +  FT   S+L     + + ++L
Sbjct: 26  NNISLVYGENTEAIQDRQALKEFFKNT-YGLPIISFTEGESSLSFSKALNIGIIL 79


>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 180 ACIMELCSWLYRTTVIFLVCVLFRLVCHLQILRLLDFAQVFQTDSDVDSVLAEHLRIRKH 239
           ACI  L + L+R   I L+    ++V  L  ++LL FA ++Q    V  V A  LR  K 
Sbjct: 328 ACITALLTVLFREQ-IALLYTENQVVVALA-MQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385

Query: 240 LRIISHRYRAFI-LWFLIMVTG 260
           +  I H  R FI  W L + TG
Sbjct: 386 MTAIFH--RTFISYWVLGLPTG 405


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.139    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,030,706
Number of Sequences: 62578
Number of extensions: 384040
Number of successful extensions: 658
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 658
Number of HSP's gapped (non-prelim): 2
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (25.0 bits)