Query 014012
Match_columns 432
No_of_seqs 63 out of 65
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 03:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014012.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014012hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ql3a_ a.3.1.1 (A:) Cytochrom 16.2 58 0.0042 24.5 3.7 17 378-394 82-98 (99)
2 d2p8ia1 d.58.55.1 (A:1-115) Pu 16.1 22 0.0016 28.6 1.2 19 383-401 67-85 (115)
3 d1g2ha_ a.4.1.12 (A:) Transcri 13.3 28 0.002 24.4 0.9 18 95-112 44-61 (61)
4 d1vd6a1 c.1.18.3 (A:8-224) Put 9.8 71 0.0052 25.1 2.5 22 384-407 168-189 (217)
5 d1exsa_ b.60.1.1 (A:) beta-Lac 8.1 78 0.0057 24.0 2.0 27 16-42 122-148 (160)
6 d3dhxa1 d.58.18.13 (A:2-100) M 7.5 1.7E+02 0.012 21.6 3.7 25 381-405 74-98 (99)
7 g2vt1.1 d.367.1.1 (A:237-257,B 7.3 92 0.0067 24.0 2.0 32 153-191 70-101 (102)
8 d1beba_ b.60.1.1 (A:) beta-Lac 7.3 80 0.0058 23.6 1.6 29 16-44 118-146 (156)
9 d1ixra2 b.40.4.2 (A:1-62) DNA 7.0 51 0.0037 23.1 0.2 16 388-403 47-62 (62)
10 d1vp2a_ c.51.4.1 (A:) Putative 6.9 81 0.0059 26.3 1.6 8 114-121 69-76 (189)
No 1
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=16.25 E-value=58 Score=24.47 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHhhhC
Q 014012 378 TISFQKRQALVNYFENN 394 (432)
Q Consensus 378 ~~SfqkRQAlVtYLq~N 394 (432)
..+=+.|++++.||+..
T Consensus 82 l~~~~d~~dliaYLks~ 98 (99)
T d1ql3a_ 82 LPKIEDRANLIAYLEGQ 98 (99)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 45789999999999875
No 2
>d2p8ia1 d.58.55.1 (A:1-115) Putative dioxygenase BxeB0224 {Burkholderia xenovorans [TaxId: 36873]}
Probab=16.06 E-value=22 Score=28.61 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhCCCceEEE
Q 014012 383 KRQALVNYFENNRAGITVF 401 (432)
Q Consensus 383 kRQAlVtYLq~N~~GITvf 401 (432)
.-.++|.+|+-||||.||+
T Consensus 67 ~F~~vv~WL~~nRg~LsVl 85 (115)
T d2p8ia1 67 QFADLVGWLTLNHGALDIF 85 (115)
T ss_dssp HHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHHHHHhCCCceEE
Confidence 3457899999999999997
No 3
>d1g2ha_ a.4.1.12 (A:) Transcriptional regulator TyrR, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=13.32 E-value=28 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=14.9
Q ss_pred HHHHHHhhhhhhhcccce
Q 014012 95 ALSFICLSSFVKKYGLRR 112 (432)
Q Consensus 95 avsf~cLS~~~rkyGLRr 112 (432)
.|+--+|.+.++|||+.|
T Consensus 44 gisr~tL~rKlkk~gi~k 61 (61)
T d1g2ha_ 44 GVSHTAIANKLKQYGIGK 61 (61)
T ss_dssp TSCTHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 456678999999999976
No 4
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=9.80 E-value=71 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=18.3
Q ss_pred HHHHHHHhhhCCCceEEEEEeeeh
Q 014012 384 RQALVNYFENNRAGITVFGFTLDR 407 (432)
Q Consensus 384 RQAlVtYLq~N~~GITvfGf~lDR 407 (432)
.+++|..++++ |+.||.||+|-
T Consensus 168 ~~~~v~~~~~~--g~~v~~wTvn~ 189 (217)
T d1vd6a1 168 TEEAVAGWRKR--GLFVVAWTVNE 189 (217)
T ss_dssp CHHHHHHHHHT--TCEEEEECCCC
T ss_pred HHHHHHHHHHC--CCEEEEECCCC
Confidence 46689999876 99999999964
No 5
>d1exsa_ b.60.1.1 (A:) beta-Lactoglobulin {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.14 E-value=78 Score=23.99 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=25.0
Q ss_pred ccccccchhHHHHHHHHHhhhheecCC
Q 014012 16 LSRSISHAQDELHSFRSYLKWMCVDQS 42 (432)
Q Consensus 16 ~~r~~s~~~deLr~fr~~L~w~~ldqS 42 (432)
|+|+.....+.++.|+..++-+|+|-+
T Consensus 122 lsR~~~~~~~~~~~f~~~~~~~g~~~~ 148 (160)
T d1exsa_ 122 LARTLEVDDQIREKFEDALKTLSVPMR 148 (160)
T ss_dssp EESSSCCCHHHHHHHHHHHTTSSSCEE
T ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCce
Confidence 799999999999999999999999753
No 6
>d3dhxa1 d.58.18.13 (A:2-100) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=7.50 E-value=1.7e+02 Score=21.56 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhhCCCceEEEEEee
Q 014012 381 FQKRQALVNYFENNRAGITVFGFTL 405 (432)
Q Consensus 381 fqkRQAlVtYLq~N~~GITvfGf~l 405 (432)
=++.|+...||+.+.--+.|-|+++
T Consensus 74 ~~~i~~al~~L~~~~v~vEvlgyV~ 98 (99)
T d3dhxa1 74 QQDTQAAIAWLQEHHVKVEVLGYVL 98 (99)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEEeeeec
Confidence 4678888999999999999999987
No 7
>g2vt1.1 d.367.1.1 (A:237-257,B:258-338) Surface presentation of antigens protein SpaS {Shigella flexneri [TaxId: 623]}
Probab=7.31 E-value=92 Score=24.05 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=18.9
Q ss_pred HhhhheeeeeccccCCccccccchhhHHHHHHHHHHHHH
Q 014012 153 SAYKIWWYASGASQIPFLGNVYLSDTVACIMELCSWLYR 191 (432)
Q Consensus 153 ~a~ki~w~~~v~~~~P~~~~~~~~~~v~~~~~l~SW~Yr 191 (432)
+|+..|.-.-....||. .....++++.+|+||
T Consensus 70 LAr~L~~~~~ig~~IP~-------ely~aVAeIL~~v~~ 101 (102)
T g2vt1.1 70 LARKLYKTHTKYSFVDF-------EHLDEVLRLIVWLEQ 101 (102)
T ss_dssp HHHHHHHHCCSSEECCT-------TTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCH-------HHHHHHHHHHHHHHh
Confidence 34444433334444554 444557889999997
No 8
>d1beba_ b.60.1.1 (A:) beta-Lactoglobulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.29 E-value=80 Score=23.59 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=26.6
Q ss_pred ccccccchhHHHHHHHHHhhhheecCCCc
Q 014012 16 LSRSISHAQDELHSFRSYLKWMCVDQSNC 44 (432)
Q Consensus 16 ~~r~~s~~~deLr~fr~~L~w~~ldqSs~ 44 (432)
+.|.+....+.++.|+..++-+|+|.+..
T Consensus 118 lsR~p~l~~e~~~~f~~~~~~~g~~~~~i 146 (156)
T d1beba_ 118 LVRTPEVDDEALEKFDKALKALPMHIRLS 146 (156)
T ss_dssp EESSSSCCHHHHHHHHHHHTTSCCCEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHcCCCHHHc
Confidence 79999999999999999999999997754
No 9
>d1ixra2 b.40.4.2 (A:1-62) DNA helicase RuvA subunit, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=6.99 E-value=51 Score=23.15 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=13.3
Q ss_pred HHHhhhCCCceEEEEE
Q 014012 388 VNYFENNRAGITVFGF 403 (432)
Q Consensus 388 VtYLq~N~~GITvfGf 403 (432)
-||++-...++++|||
T Consensus 47 ~t~~~vrED~~~LyGF 62 (62)
T d1ixra2 47 HTHLLLKEEGLSLYGF 62 (62)
T ss_dssp EECCCCCSSCCCEEEE
T ss_pred EEEEEEecCCCCccCC
Confidence 4677888889999998
No 10
>d1vp2a_ c.51.4.1 (A:) Putative inosine/xanthosine triphosphate pyrophosphatase TM0159 {Thermotoga maritima [TaxId: 2336]}
Probab=6.94 E-value=81 Score=26.27 Aligned_cols=8 Identities=25% Similarity=0.264 Sum_probs=3.3
Q ss_pred ecccccCc
Q 014012 114 LFLDKLCD 121 (432)
Q Consensus 114 LflD~l~~ 121 (432)
|++|.|.+
T Consensus 69 L~v~aL~g 76 (189)
T d1vp2a_ 69 LVIYSLGG 76 (189)
T ss_dssp EEEGGGTT
T ss_pred EEeehhhh
Confidence 34444433
Done!