Query 014013
Match_columns 432
No_of_seqs 188 out of 299
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 01:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4438 Centromere-associated 100.0 7.1E-52 1.5E-56 398.7 47.4 412 1-424 1-441 (446)
2 PF03800 Nuf2: Nuf2 family; I 100.0 5.6E-35 1.2E-39 255.9 7.6 133 2-142 5-138 (146)
3 KOG0995 Centromere-associated 99.3 2.7E-06 5.9E-11 86.8 48.9 399 11-425 76-563 (581)
4 TIGR02169 SMC_prok_A chromosom 98.8 0.0003 6.5E-09 81.3 45.9 61 86-148 120-184 (1164)
5 PRK03918 chromosome segregatio 98.6 0.00099 2.1E-08 75.0 41.9 33 89-127 124-156 (880)
6 PF00038 Filament: Intermediat 98.6 0.00088 1.9E-08 66.0 36.0 283 121-420 5-306 (312)
7 TIGR02169 SMC_prok_A chromosom 98.6 0.00087 1.9E-08 77.5 41.0 19 121-139 178-196 (1164)
8 TIGR02168 SMC_prok_B chromosom 98.6 0.0025 5.4E-08 73.7 44.1 55 88-147 124-185 (1179)
9 COG5185 HEC1 Protein involved 98.6 0.0012 2.7E-08 66.0 37.7 218 11-235 110-371 (622)
10 KOG0995 Centromere-associated 98.5 0.0018 3.8E-08 66.7 40.5 227 3-245 119-387 (581)
11 TIGR02168 SMC_prok_B chromosom 98.5 0.0026 5.6E-08 73.6 43.1 54 370-423 998-1051(1179)
12 TIGR00606 rad50 rad50. This fa 98.5 0.0016 3.5E-08 76.2 40.0 61 142-202 800-862 (1311)
13 COG1196 Smc Chromosome segrega 98.4 0.0082 1.8E-07 69.6 43.8 58 85-148 121-186 (1163)
14 KOG0161 Myosin class II heavy 98.4 0.0058 1.3E-07 72.1 41.2 70 296-369 1074-1143(1930)
15 PRK02224 chromosome segregatio 98.4 0.0075 1.6E-07 68.0 42.1 35 190-224 412-446 (880)
16 COG1340 Uncharacterized archae 98.4 0.0022 4.7E-08 61.4 36.4 78 165-243 44-121 (294)
17 PRK02224 chromosome segregatio 98.4 0.0026 5.7E-08 71.6 37.5 22 102-127 139-160 (880)
18 TIGR00606 rad50 rad50. This fa 98.4 0.012 2.6E-07 69.1 45.4 193 165-361 747-951 (1311)
19 PRK03918 chromosome segregatio 98.4 0.0072 1.6E-07 68.1 40.4 36 358-393 659-694 (880)
20 PF07888 CALCOCO1: Calcium bin 98.3 0.0059 1.3E-07 63.5 38.8 20 86-105 93-112 (546)
21 PRK01156 chromosome segregatio 98.3 0.0057 1.2E-07 69.0 38.3 33 120-153 153-185 (895)
22 KOG0996 Structural maintenance 98.3 0.0045 9.7E-08 68.4 34.3 119 300-422 923-1044(1293)
23 KOG0161 Myosin class II heavy 98.2 0.027 5.9E-07 66.7 43.7 127 296-422 1046-1185(1930)
24 PF10174 Cast: RIM-binding pro 98.2 0.016 3.4E-07 63.4 38.3 148 261-417 462-610 (775)
25 PF00261 Tropomyosin: Tropomyo 98.2 0.0036 7.8E-08 59.3 27.8 101 142-242 2-102 (237)
26 PF00038 Filament: Intermediat 98.2 0.0097 2.1E-07 58.6 33.1 77 152-228 8-85 (312)
27 PHA02562 46 endonuclease subun 98.1 0.0026 5.6E-08 67.9 28.8 97 120-227 154-250 (562)
28 KOG4438 Centromere-associated 98.1 0.013 2.7E-07 58.5 43.0 164 256-420 278-444 (446)
29 PRK04778 septation ring format 98.1 0.023 4.9E-07 60.9 38.8 32 210-241 197-228 (569)
30 PRK01156 chromosome segregatio 98.1 0.041 8.9E-07 62.2 41.8 16 32-47 29-44 (895)
31 KOG0996 Structural maintenance 98.1 0.038 8.2E-07 61.4 36.0 122 122-247 329-451 (1293)
32 KOG4674 Uncharacterized conser 98.0 0.063 1.4E-06 62.9 41.3 74 349-422 289-362 (1822)
33 PRK04863 mukB cell division pr 98.0 0.068 1.5E-06 62.8 39.5 74 74-156 241-315 (1486)
34 PF07888 CALCOCO1: Calcium bin 98.0 0.032 6.9E-07 58.2 40.9 28 25-52 76-104 (546)
35 PF00261 Tropomyosin: Tropomyo 98.0 0.017 3.6E-07 54.8 29.5 49 369-421 187-235 (237)
36 COG1340 Uncharacterized archae 97.9 0.025 5.3E-07 54.4 33.9 123 124-246 17-148 (294)
37 KOG0977 Nuclear envelope prote 97.8 0.023 4.9E-07 59.2 27.0 127 101-231 84-235 (546)
38 PRK11637 AmiB activator; Provi 97.8 0.067 1.5E-06 55.2 32.6 16 139-154 45-60 (428)
39 KOG0250 DNA repair protein RAD 97.7 0.12 2.6E-06 57.4 36.2 23 30-52 66-88 (1074)
40 KOG4674 Uncharacterized conser 97.7 0.19 4.1E-06 59.1 39.9 48 165-212 741-788 (1822)
41 PHA02562 46 endonuclease subun 97.6 0.15 3.3E-06 54.4 30.5 64 161-227 180-243 (562)
42 KOG0612 Rho-associated, coiled 97.5 0.17 3.7E-06 56.7 29.7 60 166-225 469-529 (1317)
43 KOG0933 Structural maintenance 97.5 0.23 5E-06 54.7 31.1 91 315-416 409-505 (1174)
44 KOG0964 Structural maintenance 97.5 0.23 4.9E-06 54.5 33.1 56 165-220 261-316 (1200)
45 COG4942 Membrane-bound metallo 97.5 0.14 3.1E-06 51.7 31.0 13 86-98 15-27 (420)
46 KOG0977 Nuclear envelope prote 97.5 0.2 4.3E-06 52.4 34.6 48 376-423 321-368 (546)
47 KOG0976 Rho/Rac1-interacting s 97.4 0.28 6E-06 52.7 38.8 32 388-419 370-401 (1265)
48 PF10174 Cast: RIM-binding pro 97.4 0.34 7.5E-06 53.2 41.6 57 171-227 109-165 (775)
49 PF12128 DUF3584: Protein of u 97.3 0.55 1.2E-05 54.8 39.6 39 316-354 820-858 (1201)
50 COG2433 Uncharacterized conser 97.2 0.013 2.7E-07 61.0 15.9 44 3-47 269-312 (652)
51 PF12128 DUF3584: Protein of u 97.2 0.79 1.7E-05 53.6 40.8 13 103-115 590-602 (1201)
52 PF14915 CCDC144C: CCDC144C pr 97.1 0.27 5.9E-06 47.1 38.2 271 139-419 4-300 (305)
53 PF05483 SCP-1: Synaptonemal c 97.0 0.59 1.3E-05 49.6 40.7 97 76-178 38-136 (786)
54 PRK04778 septation ring format 97.0 0.65 1.4E-05 49.8 37.3 68 160-227 110-181 (569)
55 PF05701 WEMBL: Weak chloropla 97.0 0.62 1.3E-05 49.4 42.1 114 300-421 325-438 (522)
56 PF11559 ADIP: Afadin- and alp 97.0 0.097 2.1E-06 45.9 17.6 137 87-227 6-149 (151)
57 KOG0250 DNA repair protein RAD 97.0 0.91 2E-05 50.8 39.1 74 316-393 391-464 (1074)
58 TIGR03185 DNA_S_dndD DNA sulfu 97.0 0.78 1.7E-05 50.0 37.3 41 167-207 207-247 (650)
59 PF09726 Macoilin: Transmembra 96.8 1 2.2E-05 49.2 31.1 24 314-337 589-612 (697)
60 PF12718 Tropomyosin_1: Tropom 96.8 0.26 5.6E-06 42.8 18.1 111 144-254 3-116 (143)
61 COG1579 Zn-ribbon protein, pos 96.7 0.56 1.2E-05 44.1 22.5 63 347-409 99-161 (239)
62 PF05622 HOOK: HOOK protein; 96.7 0.00043 9.3E-09 75.9 0.0 70 345-414 602-671 (713)
63 PF06160 EzrA: Septation ring 96.7 1.2 2.7E-05 47.5 40.6 114 314-427 346-463 (560)
64 COG0419 SbcC ATPase involved i 96.6 2 4.4E-05 48.8 38.0 40 118-158 156-195 (908)
65 PF05667 DUF812: Protein of un 96.5 1.5 3.3E-05 47.0 34.5 73 314-390 514-589 (594)
66 KOG0964 Structural maintenance 96.5 1.8 4E-05 47.8 32.4 92 120-218 230-321 (1200)
67 KOG0971 Microtubule-associated 96.5 1.8 3.9E-05 47.4 37.1 61 167-227 274-334 (1243)
68 TIGR02680 conserved hypothetic 96.5 2.9 6.2E-05 49.6 31.8 62 314-375 898-959 (1353)
69 KOG0976 Rho/Rac1-interacting s 96.4 1.8 3.8E-05 46.9 36.2 10 407-416 396-405 (1265)
70 KOG1962 B-cell receptor-associ 96.3 0.35 7.7E-06 44.5 16.5 104 120-228 107-210 (216)
71 KOG4643 Uncharacterized coiled 96.3 2.4 5.3E-05 47.0 38.2 67 169-235 257-325 (1195)
72 COG4942 Membrane-bound metallo 96.2 1.8 3.8E-05 44.0 31.8 73 162-234 38-110 (420)
73 PF05010 TACC: Transforming ac 96.2 1.1 2.3E-05 41.4 30.0 45 316-360 115-159 (207)
74 PF05483 SCP-1: Synaptonemal c 96.1 2.4 5.3E-05 45.2 44.8 50 372-421 425-474 (786)
75 COG1579 Zn-ribbon protein, pos 96.1 1.3 2.8E-05 41.7 24.8 39 371-412 148-186 (239)
76 COG3883 Uncharacterized protei 96.0 1.5 3.2E-05 41.8 26.4 63 179-241 48-110 (265)
77 PF08317 Spc7: Spc7 kinetochor 96.0 1.9 4.1E-05 42.8 33.2 12 87-98 15-26 (325)
78 PF10473 CENP-F_leu_zip: Leuci 95.9 0.95 2.1E-05 39.0 18.2 80 127-206 10-89 (140)
79 KOG0971 Microtubule-associated 95.9 3.5 7.7E-05 45.3 39.5 103 326-428 472-590 (1243)
80 PF05701 WEMBL: Weak chloropla 95.9 3 6.6E-05 44.2 40.9 21 138-158 59-79 (522)
81 COG5185 HEC1 Protein involved 95.9 2.4 5.3E-05 43.1 40.0 129 4-145 154-289 (622)
82 KOG0018 Structural maintenance 95.8 4.3 9.4E-05 45.5 33.1 34 396-429 443-476 (1141)
83 KOG4643 Uncharacterized coiled 95.7 4.5 9.7E-05 45.1 37.2 15 398-412 579-593 (1195)
84 KOG1937 Uncharacterized conser 95.7 2.8 6.1E-05 42.5 40.4 89 13-115 7-97 (521)
85 PRK09039 hypothetical protein; 95.7 1.2 2.5E-05 44.7 18.5 81 315-395 84-167 (343)
86 PF06705 SF-assemblin: SF-asse 95.5 2.4 5.1E-05 40.3 33.5 40 386-425 204-243 (247)
87 KOG0933 Structural maintenance 95.5 5.5 0.00012 44.4 38.1 76 163-241 742-817 (1174)
88 PF09726 Macoilin: Transmembra 95.5 5 0.00011 43.9 30.9 42 160-201 458-499 (697)
89 PF10234 Cluap1: Clusterin-ass 95.4 2.2 4.7E-05 40.9 18.4 31 20-50 2-33 (267)
90 PF12718 Tropomyosin_1: Tropom 95.4 1.6 3.4E-05 37.9 18.8 23 314-336 117-139 (143)
91 KOG0994 Extracellular matrix g 95.4 6.2 0.00013 44.7 39.3 23 164-186 1463-1485(1758)
92 PRK04863 mukB cell division pr 95.4 8.5 0.00018 45.9 42.3 31 123-153 303-333 (1486)
93 PF14915 CCDC144C: CCDC144C pr 95.3 3 6.5E-05 40.2 36.9 168 160-340 61-242 (305)
94 KOG0979 Structural maintenance 95.3 6.5 0.00014 43.9 34.7 65 140-204 635-699 (1072)
95 PRK09039 hypothetical protein; 95.3 3.7 8E-05 41.1 21.5 46 351-396 137-182 (343)
96 PF05266 DUF724: Protein of un 95.2 2.2 4.7E-05 38.9 17.1 130 77-224 44-179 (190)
97 KOG0962 DNA repair protein RAD 95.2 7.9 0.00017 44.7 36.8 38 205-242 879-916 (1294)
98 PF01576 Myosin_tail_1: Myosin 95.2 0.0052 1.1E-07 68.6 0.0 92 135-226 153-244 (859)
99 TIGR03007 pepcterm_ChnLen poly 95.2 4.9 0.00011 42.2 23.4 23 106-132 128-150 (498)
100 PF15070 GOLGA2L5: Putative go 95.0 6.2 0.00013 42.6 36.3 35 124-158 33-67 (617)
101 KOG0963 Transcription factor/C 95.0 5.7 0.00012 42.1 32.4 67 108-178 99-165 (629)
102 PF15619 Lebercilin: Ciliary p 95.0 2.8 6E-05 38.4 25.3 126 120-245 5-134 (194)
103 TIGR03185 DNA_S_dndD DNA sulfu 95.0 6.9 0.00015 42.7 39.9 13 409-421 507-519 (650)
104 PF10473 CENP-F_leu_zip: Leuci 95.0 2.2 4.7E-05 36.8 17.8 64 163-226 25-88 (140)
105 TIGR00634 recN DNA repair prot 94.9 6.6 0.00014 42.1 23.3 51 314-372 324-374 (563)
106 PF06008 Laminin_I: Laminin Do 94.9 3.8 8.2E-05 39.3 32.6 82 169-250 59-141 (264)
107 PF10146 zf-C4H2: Zinc finger- 94.8 2 4.3E-05 40.4 15.9 108 316-428 5-114 (230)
108 KOG0994 Extracellular matrix g 94.7 9.8 0.00021 43.2 37.1 22 399-420 1712-1733(1758)
109 KOG4673 Transcription factor T 94.3 8.8 0.00019 41.1 35.3 78 161-238 401-480 (961)
110 COG3883 Uncharacterized protei 94.3 5.1 0.00011 38.2 24.6 60 175-234 37-96 (265)
111 PF13514 AAA_27: AAA domain 94.3 14 0.0003 43.1 42.9 75 169-243 659-737 (1111)
112 PF09787 Golgin_A5: Golgin sub 94.3 8.6 0.00019 40.7 27.2 16 405-420 338-353 (511)
113 PF01576 Myosin_tail_1: Myosin 94.3 0.012 2.7E-07 65.7 0.0 51 370-420 480-530 (859)
114 COG4026 Uncharacterized protei 94.3 0.69 1.5E-05 42.4 11.0 81 129-209 130-210 (290)
115 KOG4673 Transcription factor T 94.2 9.5 0.00021 40.9 34.9 73 159-231 413-487 (961)
116 PF05622 HOOK: HOOK protein; 94.1 0.037 8E-07 60.9 3.3 14 37-50 70-83 (713)
117 COG0419 SbcC ATPase involved i 94.0 14 0.0003 42.1 44.5 55 175-229 388-442 (908)
118 PF08614 ATG16: Autophagy prot 93.5 0.71 1.5E-05 42.2 10.2 104 122-225 76-179 (194)
119 PF06005 DUF904: Protein of un 93.4 1.7 3.8E-05 32.9 10.3 44 164-207 27-70 (72)
120 smart00787 Spc7 Spc7 kinetocho 93.3 8.9 0.00019 37.8 27.5 12 87-98 11-22 (312)
121 KOG1029 Endocytic adaptor prot 93.1 15 0.00033 39.9 30.9 16 100-115 269-284 (1118)
122 PRK10869 recombination and rep 93.1 14 0.00031 39.5 25.5 25 88-115 121-145 (553)
123 KOG0946 ER-Golgi vesicle-tethe 93.0 16 0.00035 40.0 34.0 12 36-47 542-553 (970)
124 PF05667 DUF812: Protein of un 92.9 16 0.00034 39.4 29.3 38 13-50 70-108 (594)
125 TIGR00634 recN DNA repair prot 92.7 16 0.00035 39.1 24.3 37 165-201 164-200 (563)
126 KOG0612 Rho-associated, coiled 92.6 23 0.0005 40.6 36.9 23 316-338 671-693 (1317)
127 PF14662 CCDC155: Coiled-coil 92.5 7.9 0.00017 35.0 23.4 62 165-226 63-124 (193)
128 KOG1003 Actin filament-coating 92.5 8.1 0.00017 35.0 26.6 72 171-242 48-119 (205)
129 PF15070 GOLGA2L5: Putative go 92.4 18 0.0004 39.1 37.9 26 315-340 198-223 (617)
130 PF05557 MAD: Mitotic checkpoi 92.4 0.037 8.1E-07 61.0 0.0 12 314-325 314-325 (722)
131 COG0497 RecN ATPase involved i 92.4 17 0.00037 38.5 25.4 40 198-237 263-302 (557)
132 PF10481 CENP-F_N: Cenp-F N-te 92.3 4.7 0.0001 38.3 13.5 109 120-228 18-126 (307)
133 KOG1003 Actin filament-coating 92.3 8.6 0.00019 34.8 25.1 60 177-236 5-64 (205)
134 PF09304 Cortex-I_coil: Cortex 92.3 5.4 0.00012 32.5 12.2 72 130-208 5-76 (107)
135 KOG1029 Endocytic adaptor prot 92.1 21 0.00045 39.0 35.4 36 372-407 556-591 (1118)
136 PF04912 Dynamitin: Dynamitin 92.0 15 0.00034 37.3 26.7 36 210-245 208-255 (388)
137 PF04849 HAP1_N: HAP1 N-termin 91.9 4.1 8.8E-05 39.7 13.2 67 149-215 235-301 (306)
138 PRK15422 septal ring assembly 91.9 2.6 5.7E-05 32.2 9.3 47 163-209 26-72 (79)
139 PF08614 ATG16: Autophagy prot 91.8 3.2 6.9E-05 37.9 12.0 101 317-425 93-193 (194)
140 KOG0018 Structural maintenance 91.7 27 0.00059 39.5 31.3 58 165-222 230-287 (1141)
141 TIGR02680 conserved hypothetic 91.6 36 0.00077 40.6 35.4 72 315-386 892-963 (1353)
142 PF06160 EzrA: Septation ring 91.5 22 0.00049 38.0 38.6 55 160-214 106-160 (560)
143 PF05266 DUF724: Protein of un 91.5 11 0.00024 34.4 16.2 119 76-221 65-183 (190)
144 PF09730 BicD: Microtubule-ass 91.3 26 0.00056 38.5 40.9 42 165-206 72-113 (717)
145 PRK10884 SH3 domain-containing 91.0 4.5 9.7E-05 37.4 12.1 73 315-394 96-168 (206)
146 PF04111 APG6: Autophagy prote 91.0 5.2 0.00011 39.5 13.3 89 139-227 48-136 (314)
147 PRK10884 SH3 domain-containing 91.0 5.8 0.00013 36.7 12.7 21 319-339 93-113 (206)
148 COG4372 Uncharacterized protei 90.9 19 0.00041 36.1 33.4 59 163-221 110-168 (499)
149 PLN02939 transferase, transfer 90.8 34 0.00074 38.9 27.6 48 315-362 354-401 (977)
150 PF12325 TMF_TATA_bd: TATA ele 90.8 9 0.00019 32.2 13.5 28 193-220 78-105 (120)
151 PF05557 MAD: Mitotic checkpoi 90.7 3.3 7.1E-05 45.8 12.9 35 373-407 607-641 (722)
152 PF11932 DUF3450: Protein of u 90.1 10 0.00022 36.1 14.2 18 374-391 72-89 (251)
153 KOG4302 Microtubule-associated 90.1 31 0.00068 37.4 23.8 115 130-248 57-172 (660)
154 PF13874 Nup54: Nucleoporin co 90.1 2 4.3E-05 37.2 8.4 43 166-208 48-90 (141)
155 PF06005 DUF904: Protein of un 90.0 5.7 0.00012 30.2 9.7 55 155-209 11-65 (72)
156 KOG0980 Actin-binding protein 89.7 37 0.00081 37.6 31.8 28 194-221 362-389 (980)
157 KOG0979 Structural maintenance 89.6 41 0.00088 37.9 35.1 113 120-234 175-292 (1072)
158 PRK10869 recombination and rep 89.5 33 0.00071 36.7 24.6 21 32-52 28-48 (553)
159 PF11559 ADIP: Afadin- and alp 89.1 14 0.00031 32.1 17.5 39 376-414 112-150 (151)
160 KOG0804 Cytoplasmic Zn-finger 89.1 29 0.00062 35.5 17.4 47 314-360 377-423 (493)
161 PF09304 Cortex-I_coil: Cortex 88.8 12 0.00025 30.6 13.6 62 168-229 8-69 (107)
162 PF05911 DUF869: Plant protein 88.8 44 0.00094 37.2 25.6 48 181-228 594-641 (769)
163 PF15066 CAGE1: Cancer-associa 88.8 31 0.00067 35.4 28.0 40 374-413 487-526 (527)
164 PF03800 Nuf2: Nuf2 family; I 88.6 0.42 9.1E-06 41.6 3.2 38 14-51 90-127 (146)
165 COG3074 Uncharacterized protei 88.6 8.3 0.00018 28.7 9.3 45 164-208 27-71 (79)
166 KOG3091 Nuclear pore complex, 88.6 33 0.00072 35.6 17.6 44 165-208 351-394 (508)
167 PF13851 GAS: Growth-arrest sp 88.4 20 0.00044 32.9 26.1 63 140-202 26-88 (201)
168 PF11932 DUF3450: Protein of u 88.3 13 0.00027 35.4 13.4 57 169-225 49-105 (251)
169 PF07889 DUF1664: Protein of u 88.2 14 0.0003 31.3 11.9 42 351-392 82-123 (126)
170 TIGR01005 eps_transp_fam exopo 88.0 48 0.001 36.8 25.8 21 108-132 163-183 (754)
171 PF14197 Cep57_CLD_2: Centroso 87.4 7.8 0.00017 29.2 8.9 60 167-226 3-62 (69)
172 KOG0999 Microtubule-associated 87.2 42 0.00092 35.3 26.9 56 169-224 100-155 (772)
173 PF15294 Leu_zip: Leucine zipp 87.2 24 0.00051 34.1 14.2 34 165-198 135-168 (278)
174 smart00787 Spc7 Spc7 kinetocho 87.1 33 0.00071 33.9 28.7 29 162-190 63-91 (312)
175 COG1842 PspA Phage shock prote 87.0 25 0.00054 33.0 14.0 79 315-393 55-141 (225)
176 PF15619 Lebercilin: Ciliary p 86.6 25 0.00055 32.1 24.3 56 164-219 21-76 (194)
177 KOG1962 B-cell receptor-associ 86.3 12 0.00027 34.5 11.3 57 347-414 154-210 (216)
178 PRK15422 septal ring assembly 86.2 13 0.00028 28.6 9.4 53 173-225 8-60 (79)
179 PF07106 TBPIP: Tat binding pr 86.1 18 0.00039 32.1 12.3 34 78-112 29-64 (169)
180 PF10498 IFT57: Intra-flagella 85.9 27 0.00059 35.2 14.6 21 32-52 36-58 (359)
181 PF05278 PEARLI-4: Arabidopsis 85.8 34 0.00073 32.8 15.3 54 174-227 205-258 (269)
182 PF05010 TACC: Transforming ac 85.7 29 0.00064 32.0 28.6 25 230-254 67-91 (207)
183 PF11172 DUF2959: Protein of u 85.7 28 0.00061 31.8 18.6 29 398-426 164-192 (201)
184 PF09730 BicD: Microtubule-ass 85.6 62 0.0013 35.6 38.7 87 140-226 33-119 (717)
185 KOG0980 Actin-binding protein 84.9 70 0.0015 35.6 32.5 39 161-199 357-395 (980)
186 KOG1937 Uncharacterized conser 84.8 50 0.0011 33.9 28.1 17 408-424 452-468 (521)
187 PF12329 TMF_DNA_bd: TATA elem 84.6 15 0.00033 28.0 9.4 57 170-226 13-69 (74)
188 TIGR03752 conj_TIGR03752 integ 84.5 12 0.00026 38.7 11.4 73 120-192 59-132 (472)
189 COG3074 Uncharacterized protei 84.5 15 0.00032 27.4 9.3 62 174-235 9-70 (79)
190 COG4026 Uncharacterized protei 84.4 11 0.00024 34.7 10.0 60 165-224 145-204 (290)
191 PF06008 Laminin_I: Laminin Do 84.4 39 0.00085 32.3 30.9 68 174-241 43-110 (264)
192 KOG4809 Rab6 GTPase-interactin 84.0 60 0.0013 34.1 26.2 80 148-234 331-410 (654)
193 PF04111 APG6: Autophagy prote 83.6 15 0.00033 36.2 11.6 64 169-232 64-127 (314)
194 TIGR02449 conserved hypothetic 83.5 14 0.0003 27.5 8.4 48 161-208 13-60 (65)
195 PF09789 DUF2353: Uncharacteri 83.4 49 0.0011 32.6 22.2 35 121-155 10-44 (319)
196 PF00769 ERM: Ezrin/radixin/mo 83.2 43 0.00093 31.8 15.2 15 317-331 187-201 (246)
197 TIGR02977 phageshock_pspA phag 82.9 40 0.00087 31.3 13.9 102 293-394 33-135 (219)
198 PF10481 CENP-F_N: Cenp-F N-te 82.7 46 0.001 31.8 15.4 57 292-348 19-75 (307)
199 COG4372 Uncharacterized protei 82.6 57 0.0012 32.8 32.7 31 196-226 115-145 (499)
200 PF03962 Mnd1: Mnd1 family; I 82.6 38 0.00082 30.8 15.0 29 129-157 71-99 (188)
201 PF07926 TPR_MLP1_2: TPR/MLP1/ 82.6 29 0.00063 29.5 18.9 77 345-421 53-129 (132)
202 PF09728 Taxilin: Myosin-like 82.6 52 0.0011 32.4 37.4 15 379-393 251-265 (309)
203 PF01920 Prefoldin_2: Prefoldi 82.5 24 0.00051 28.3 11.0 75 125-199 3-99 (106)
204 KOG0963 Transcription factor/C 82.4 74 0.0016 34.0 35.4 20 317-336 247-266 (629)
205 PF14992 TMCO5: TMCO5 family 82.4 49 0.0011 31.9 15.5 16 256-271 24-39 (280)
206 PF04012 PspA_IM30: PspA/IM30 81.9 43 0.00093 31.0 16.6 20 315-334 54-73 (221)
207 PF04849 HAP1_N: HAP1 N-termin 81.7 55 0.0012 32.1 28.7 59 277-338 202-260 (306)
208 PF12325 TMF_TATA_bd: TATA ele 81.7 30 0.00066 29.0 14.2 49 345-400 69-117 (120)
209 PF15066 CAGE1: Cancer-associa 81.5 69 0.0015 33.0 26.1 91 150-240 319-412 (527)
210 PF03962 Mnd1: Mnd1 family; I 81.3 26 0.00055 31.9 11.3 45 197-244 103-147 (188)
211 KOG0978 E3 ubiquitin ligase in 80.5 95 0.0021 34.0 38.8 19 121-139 315-333 (698)
212 PF02403 Seryl_tRNA_N: Seryl-t 80.4 30 0.00064 28.1 11.1 29 126-154 28-56 (108)
213 PF14662 CCDC155: Coiled-coil 80.3 46 0.00099 30.2 24.6 41 166-206 12-52 (193)
214 PF10168 Nup88: Nuclear pore c 80.2 1E+02 0.0022 34.2 22.2 40 169-208 579-618 (717)
215 COG1382 GimC Prefoldin, chaper 79.8 35 0.00075 28.6 11.8 84 120-203 13-111 (119)
216 PF10186 Atg14: UV radiation r 79.7 60 0.0013 31.2 18.3 39 171-209 65-103 (302)
217 PF10498 IFT57: Intra-flagella 79.5 73 0.0016 32.1 16.7 44 7-50 69-114 (359)
218 cd00632 Prefoldin_beta Prefold 79.2 32 0.0007 27.9 11.8 33 125-157 4-36 (105)
219 PF12329 TMF_DNA_bd: TATA elem 78.5 27 0.00059 26.6 9.6 56 162-217 12-67 (74)
220 KOG4637 Adaptor for phosphoino 78.2 78 0.0017 31.7 16.8 30 68-97 82-113 (464)
221 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.7 43 0.00093 28.4 17.4 17 205-221 67-83 (132)
222 smart00502 BBC B-Box C-termina 77.6 37 0.00081 27.7 13.8 65 187-251 4-69 (127)
223 PF15450 DUF4631: Domain of un 77.5 98 0.0021 32.5 36.1 20 395-414 453-472 (531)
224 TIGR03007 pepcterm_ChnLen poly 77.4 98 0.0021 32.4 22.7 32 197-228 204-235 (498)
225 PF06705 SF-assemblin: SF-asse 76.4 70 0.0015 30.2 26.7 27 390-416 161-187 (247)
226 PF13851 GAS: Growth-arrest sp 76.0 64 0.0014 29.6 26.6 44 293-336 88-131 (201)
227 PF13870 DUF4201: Domain of un 75.7 59 0.0013 29.0 22.4 68 163-230 43-110 (177)
228 KOG0978 E3 ubiquitin ligase in 75.1 1.4E+02 0.0029 32.9 38.2 26 397-422 559-584 (698)
229 KOG4593 Mitotic checkpoint pro 74.4 1.4E+02 0.003 32.6 33.9 52 191-243 238-289 (716)
230 TIGR02338 gimC_beta prefoldin, 74.3 47 0.001 27.2 12.5 37 121-157 4-40 (110)
231 COG0497 RecN ATPase involved i 74.2 1.3E+02 0.0028 32.2 25.8 40 164-203 159-198 (557)
232 PF07111 HCR: Alpha helical co 73.5 1.4E+02 0.0031 32.5 36.2 57 353-409 551-608 (739)
233 KOG1760 Molecular chaperone Pr 73.4 54 0.0012 27.5 10.7 32 125-156 21-52 (131)
234 PF15254 CCDC14: Coiled-coil d 73.1 1.5E+02 0.0034 32.6 24.8 77 163-248 388-467 (861)
235 PRK09841 cryptic autophosphory 73.0 1.6E+02 0.0034 32.7 18.3 23 107-133 235-257 (726)
236 KOG4196 bZIP transcription fac 72.9 25 0.00054 29.7 7.8 39 165-203 77-115 (135)
237 PHA03011 hypothetical protein; 72.7 31 0.00067 27.7 7.9 60 169-228 57-116 (120)
238 KOG0804 Cytoplasmic Zn-finger 72.5 1.2E+02 0.0026 31.2 17.3 37 317-353 408-444 (493)
239 PF10211 Ax_dynein_light: Axon 72.4 77 0.0017 28.8 12.8 11 36-46 32-42 (189)
240 PF07106 TBPIP: Tat binding pr 71.9 22 0.00048 31.5 8.1 79 163-241 73-154 (169)
241 PRK00409 recombination and DNA 71.7 1.7E+02 0.0036 32.9 16.5 51 164-214 229-280 (782)
242 KOG0962 DNA repair protein RAD 71.6 2.1E+02 0.0046 33.6 37.9 57 163-219 872-928 (1294)
243 KOG1853 LIS1-interacting prote 71.5 94 0.002 29.5 17.7 21 207-227 94-114 (333)
244 PF06156 DUF972: Protein of un 71.5 26 0.00057 28.7 7.7 43 141-183 8-50 (107)
245 KOG2991 Splicing regulator [RN 71.4 95 0.0021 29.5 25.1 67 174-240 106-172 (330)
246 PF09787 Golgin_A5: Golgin sub 71.4 1.4E+02 0.0031 31.5 26.6 68 353-420 276-346 (511)
247 PF02403 Seryl_tRNA_N: Seryl-t 71.4 34 0.00074 27.7 8.6 35 163-197 30-64 (108)
248 PF15290 Syntaphilin: Golgi-lo 71.3 1E+02 0.0022 29.7 13.5 74 298-375 75-148 (305)
249 PF09728 Taxilin: Myosin-like 71.3 1.1E+02 0.0024 30.2 39.2 25 120-144 22-46 (309)
250 PRK11281 hypothetical protein; 71.1 2.1E+02 0.0046 33.4 29.9 56 174-229 126-181 (1113)
251 PF09755 DUF2046: Uncharacteri 70.6 1.1E+02 0.0024 30.0 34.5 17 353-369 231-247 (310)
252 PF13514 AAA_27: AAA domain 70.6 2.2E+02 0.0048 33.3 40.7 17 82-98 581-597 (1111)
253 PF10186 Atg14: UV radiation r 70.0 1.1E+02 0.0023 29.4 20.2 32 168-199 69-100 (302)
254 TIGR00618 sbcc exonuclease Sbc 69.7 2.2E+02 0.0048 33.0 40.2 51 103-158 154-204 (1042)
255 TIGR01069 mutS2 MutS2 family p 69.1 1.7E+02 0.0037 32.8 15.8 50 164-213 224-274 (771)
256 PF08317 Spc7: Spc7 kinetochor 68.8 1.3E+02 0.0027 29.9 30.3 27 137-163 78-104 (325)
257 PF05384 DegS: Sensor protein 68.7 84 0.0018 27.8 19.2 42 261-304 66-107 (159)
258 PF15294 Leu_zip: Leucine zipp 66.8 1.3E+02 0.0028 29.2 19.5 77 167-245 130-206 (278)
259 PF06810 Phage_GP20: Phage min 66.8 73 0.0016 28.0 10.1 31 374-404 53-83 (155)
260 cd09234 V_HD-PTP_like Protein- 66.6 1.4E+02 0.0031 29.6 31.5 24 84-109 29-52 (337)
261 PF13874 Nup54: Nucleoporin co 66.5 51 0.0011 28.4 8.9 103 108-210 18-120 (141)
262 TIGR02894 DNA_bind_RsfA transc 66.4 77 0.0017 27.9 9.8 46 163-208 98-143 (161)
263 KOG0243 Kinesin-like protein [ 66.2 2.5E+02 0.0054 32.3 32.6 268 137-414 407-685 (1041)
264 PF07798 DUF1640: Protein of u 66.0 99 0.0022 27.6 17.1 125 114-245 28-154 (177)
265 PF10267 Tmemb_cc2: Predicted 66.0 1.6E+02 0.0035 30.1 15.4 76 167-245 210-285 (395)
266 KOG2264 Exostosin EXT1L [Signa 65.9 37 0.00081 35.8 9.0 44 173-216 104-147 (907)
267 PF06785 UPF0242: Uncharacteri 65.7 1.5E+02 0.0031 29.4 17.1 48 160-207 132-179 (401)
268 TIGR03017 EpsF chain length de 65.4 1.7E+02 0.0037 30.1 25.2 22 108-133 140-161 (444)
269 PF10267 Tmemb_cc2: Predicted 65.0 1.7E+02 0.0036 29.9 16.2 71 315-385 247-318 (395)
270 PF10205 KLRAQ: Predicted coil 64.9 75 0.0016 25.8 10.4 49 168-216 25-73 (102)
271 PF05700 BCAS2: Breast carcino 64.7 1.2E+02 0.0026 28.2 16.4 63 164-226 145-211 (221)
272 PF06785 UPF0242: Uncharacteri 64.5 1.5E+02 0.0033 29.3 20.0 43 346-391 171-213 (401)
273 KOG0999 Microtubule-associated 64.4 2E+02 0.0043 30.5 32.4 31 197-227 43-73 (772)
274 TIGR02449 conserved hypothetic 64.4 57 0.0012 24.2 9.0 37 349-385 26-62 (65)
275 PF10224 DUF2205: Predicted co 64.3 44 0.00095 25.9 7.1 43 167-209 21-63 (80)
276 PF09789 DUF2353: Uncharacteri 64.0 1.6E+02 0.0034 29.2 23.1 26 396-421 202-227 (319)
277 PRK11546 zraP zinc resistance 63.9 45 0.00097 28.9 7.9 31 371-401 88-118 (143)
278 PRK13169 DNA replication intia 63.5 47 0.001 27.4 7.6 42 140-181 7-48 (110)
279 PF08826 DMPK_coil: DMPK coile 63.5 56 0.0012 23.9 8.2 18 278-295 8-25 (61)
280 PRK11281 hypothetical protein; 63.4 3E+02 0.0065 32.3 29.3 11 382-392 356-366 (1113)
281 PF07111 HCR: Alpha helical co 63.3 2.3E+02 0.0051 30.9 40.6 70 163-232 163-233 (739)
282 PF05529 Bap31: B-cell recepto 62.8 67 0.0014 29.1 9.5 32 353-384 156-187 (192)
283 KOG4360 Uncharacterized coiled 62.4 2.1E+02 0.0045 30.1 13.5 38 167-204 252-289 (596)
284 PF13870 DUF4201: Domain of un 62.2 1.2E+02 0.0025 27.1 22.4 32 190-221 42-73 (177)
285 PF05529 Bap31: B-cell recepto 62.1 1.2E+02 0.0026 27.3 15.2 27 172-198 157-183 (192)
286 PRK11519 tyrosine kinase; Prov 62.0 2.6E+02 0.0056 31.0 19.1 46 86-135 209-259 (719)
287 COG1842 PspA Phage shock prote 61.6 1.4E+02 0.0031 27.9 17.6 18 232-249 27-44 (225)
288 PF10224 DUF2205: Predicted co 61.5 49 0.0011 25.7 6.9 40 188-227 21-60 (80)
289 PRK14127 cell division protein 60.8 34 0.00074 28.2 6.4 59 100-158 5-68 (109)
290 KOG0249 LAR-interacting protei 60.2 2.7E+02 0.0058 30.6 24.6 45 341-385 213-257 (916)
291 PF08232 Striatin: Striatin fa 60.1 93 0.002 26.6 9.3 35 120-154 4-38 (134)
292 PF13863 DUF4200: Domain of un 59.4 1E+02 0.0022 25.6 16.5 7 376-382 85-91 (126)
293 PF05911 DUF869: Plant protein 59.2 3E+02 0.0064 30.8 30.1 49 177-225 510-558 (769)
294 PF13747 DUF4164: Domain of un 59.0 88 0.0019 24.7 10.0 48 190-237 39-86 (89)
295 TIGR03752 conj_TIGR03752 integ 58.4 1E+02 0.0022 32.1 10.6 26 171-196 68-93 (472)
296 PF02845 CUE: CUE domain; Int 58.3 7.5 0.00016 25.9 1.8 19 5-23 11-29 (42)
297 PF10211 Ax_dynein_light: Axon 58.2 1.5E+02 0.0032 27.0 17.1 30 305-334 77-106 (189)
298 KOG0288 WD40 repeat protein Ti 57.8 2.2E+02 0.0049 29.0 16.1 62 168-229 12-73 (459)
299 TIGR03545 conserved hypothetic 57.1 1.8E+02 0.004 31.1 12.8 31 377-407 242-272 (555)
300 PF06428 Sec2p: GDP/GTP exchan 57.0 22 0.00048 28.8 4.6 66 164-229 17-83 (100)
301 PF04102 SlyX: SlyX; InterPro 56.9 67 0.0015 24.0 7.0 44 165-208 7-50 (69)
302 PF07889 DUF1664: Protein of u 56.8 1.2E+02 0.0026 25.7 13.3 34 327-360 51-84 (126)
303 TIGR02231 conserved hypothetic 56.7 1.1E+02 0.0024 32.4 11.3 27 124-150 75-101 (525)
304 PF10212 TTKRSYEDQ: Predicted 56.6 2.6E+02 0.0057 29.5 14.9 45 180-224 470-514 (518)
305 PF09755 DUF2046: Uncharacteri 56.0 2.1E+02 0.0046 28.1 31.4 95 138-232 52-156 (310)
306 PF15290 Syntaphilin: Golgi-lo 55.3 2E+02 0.0044 27.7 13.5 10 213-222 119-128 (305)
307 TIGR01010 BexC_CtrB_KpsE polys 55.3 1.6E+02 0.0036 29.3 11.7 12 228-239 139-150 (362)
308 PLN02678 seryl-tRNA synthetase 55.0 1.3E+02 0.0028 31.4 10.9 31 126-156 32-62 (448)
309 PF04312 DUF460: Protein of un 55.0 11 0.00024 32.3 2.6 46 4-50 58-103 (138)
310 PLN02939 transferase, transfer 54.8 3.8E+02 0.0083 30.8 30.5 44 171-214 137-180 (977)
311 PF02183 HALZ: Homeobox associ 54.6 51 0.0011 22.5 5.4 21 182-202 11-31 (45)
312 COG4477 EzrA Negative regulato 54.4 2.9E+02 0.0063 29.3 39.1 110 139-251 116-237 (570)
313 PF09738 DUF2051: Double stran 53.7 2.3E+02 0.005 27.9 13.4 70 144-213 108-177 (302)
314 PRK05431 seryl-tRNA synthetase 53.6 1.3E+02 0.0028 31.1 10.8 29 127-155 28-56 (425)
315 COG5570 Uncharacterized small 53.4 32 0.00069 24.2 4.2 17 210-226 39-55 (57)
316 PTZ00332 paraflagellar rod pro 53.3 2.9E+02 0.0063 28.9 26.5 26 88-115 78-103 (589)
317 PF05278 PEARLI-4: Arabidopsis 53.1 2.2E+02 0.0047 27.4 19.7 43 349-391 198-240 (269)
318 COG2433 Uncharacterized conser 53.1 3.2E+02 0.007 29.4 18.5 6 129-134 354-359 (652)
319 TIGR02338 gimC_beta prefoldin, 52.1 1.3E+02 0.0028 24.6 10.7 19 171-189 12-30 (110)
320 PF05700 BCAS2: Breast carcino 51.4 2.1E+02 0.0045 26.6 16.3 69 317-392 148-216 (221)
321 PF08172 CASP_C: CASP C termin 51.3 51 0.0011 31.4 6.8 38 169-206 93-130 (248)
322 KOG2391 Vacuolar sorting prote 51.2 71 0.0015 31.6 7.7 50 180-229 229-278 (365)
323 PF03801 Ndc80_HEC: HEC/Ndc80p 50.8 1.1E+02 0.0024 26.8 8.5 97 12-133 43-142 (157)
324 PF00769 ERM: Ezrin/radixin/mo 50.6 2.3E+02 0.0049 26.9 15.0 15 139-153 10-24 (246)
325 PF07462 MSP1_C: Merozoite sur 50.4 36 0.00077 35.8 5.9 33 399-431 538-570 (574)
326 PRK15178 Vi polysaccharide exp 50.3 3.1E+02 0.0068 28.4 12.9 47 116-162 229-277 (434)
327 KOG0982 Centrosomal protein Nu 50.3 3E+02 0.0066 28.3 28.2 27 395-421 462-488 (502)
328 PF07200 Mod_r: Modifier of ru 49.9 1.7E+02 0.0036 25.2 16.0 82 160-243 25-106 (150)
329 PRK09841 cryptic autophosphory 49.4 3.2E+02 0.0068 30.4 13.7 20 79-98 91-110 (726)
330 PF07352 Phage_Mu_Gam: Bacteri 49.3 1.3E+02 0.0027 26.1 8.6 36 385-420 27-62 (149)
331 PF04977 DivIC: Septum formati 49.1 80 0.0017 23.6 6.6 7 230-236 53-59 (80)
332 PRK10698 phage shock protein P 49.0 2.3E+02 0.0049 26.4 23.5 19 230-248 24-43 (222)
333 PF04728 LPP: Lipoprotein leuc 48.9 99 0.0021 22.2 7.8 44 165-208 6-49 (56)
334 KOG3091 Nuclear pore complex, 48.9 3.4E+02 0.0074 28.4 17.0 66 141-206 355-420 (508)
335 PF04949 Transcrip_act: Transc 48.4 1.8E+02 0.004 25.2 14.1 65 345-412 60-127 (159)
336 PF15188 CCDC-167: Coiled-coil 48.0 1.3E+02 0.0029 23.5 8.0 23 197-219 43-65 (85)
337 cd07664 BAR_SNX2 The Bin/Amphi 48.0 2.4E+02 0.0053 26.5 28.4 115 156-286 16-131 (234)
338 TIGR00414 serS seryl-tRNA synt 47.9 1.8E+02 0.0039 29.9 10.8 30 126-155 29-58 (418)
339 PF14282 FlxA: FlxA-like prote 47.1 84 0.0018 25.6 6.7 20 314-333 21-40 (106)
340 PHA03011 hypothetical protein; 47.1 1.5E+02 0.0033 23.9 7.9 51 346-396 66-116 (120)
341 TIGR01010 BexC_CtrB_KpsE polys 46.6 3.1E+02 0.0067 27.3 15.1 43 203-245 213-258 (362)
342 smart00546 CUE Domain that may 46.5 18 0.00039 24.1 2.2 18 5-22 12-29 (43)
343 PRK10361 DNA recombination pro 46.4 3.7E+02 0.0081 28.2 23.1 46 371-416 146-191 (475)
344 COG4477 EzrA Negative regulato 46.1 3.9E+02 0.0085 28.3 34.9 36 358-393 454-489 (570)
345 PF06810 Phage_GP20: Phage min 46.0 1.9E+02 0.0041 25.4 9.1 49 196-245 19-67 (155)
346 KOG1899 LAR transmembrane tyro 45.9 4.2E+02 0.0092 28.7 20.5 46 170-215 105-150 (861)
347 PF06156 DUF972: Protein of un 45.8 1.6E+02 0.0036 24.1 8.1 30 171-200 10-39 (107)
348 PF05103 DivIVA: DivIVA protei 45.6 6.8 0.00015 33.0 -0.1 34 120-153 25-58 (131)
349 PF12777 MT: Microtubule-bindi 45.4 3.2E+02 0.007 27.2 21.2 67 346-412 244-313 (344)
350 PRK10246 exonuclease subunit S 45.3 5.6E+02 0.012 29.9 41.9 40 117-157 168-207 (1047)
351 PF05377 FlaC_arch: Flagella a 45.3 1.1E+02 0.0024 21.9 6.2 22 164-185 16-37 (55)
352 PRK00846 hypothetical protein; 45.0 1.4E+02 0.0031 22.9 7.8 41 167-207 18-58 (77)
353 PRK02793 phi X174 lysis protei 45.0 1.3E+02 0.0029 22.6 7.1 6 179-184 25-30 (72)
354 cd00014 CH Calponin homology d 45.0 23 0.0005 28.1 3.1 34 90-127 69-104 (107)
355 PRK13729 conjugal transfer pil 45.0 90 0.002 32.5 7.8 6 122-127 54-59 (475)
356 PF12808 Mto2_bdg: Micro-tubul 44.9 1.1E+02 0.0024 21.7 6.0 45 324-368 2-46 (52)
357 TIGR02231 conserved hypothetic 44.9 2.1E+02 0.0045 30.4 11.0 26 129-154 73-98 (525)
358 PRK00295 hypothetical protein; 44.4 1.3E+02 0.0029 22.4 7.4 26 174-199 17-42 (68)
359 PRK00736 hypothetical protein; 44.2 1.3E+02 0.0029 22.4 7.2 40 167-206 10-49 (68)
360 PF08581 Tup_N: Tup N-terminal 44.0 1.5E+02 0.0032 22.9 11.7 41 367-407 34-74 (79)
361 PRK13729 conjugal transfer pil 43.8 96 0.0021 32.3 7.8 7 121-127 61-67 (475)
362 PF10779 XhlA: Haemolysin XhlA 43.5 1.4E+02 0.003 22.4 7.1 11 381-391 36-46 (71)
363 PRK03947 prefoldin subunit alp 43.4 2.1E+02 0.0044 24.3 13.0 35 121-155 7-41 (140)
364 PF07862 Nif11: Nitrogen fixat 43.1 22 0.00048 24.4 2.3 21 10-31 28-48 (49)
365 PF06632 XRCC4: DNA double-str 42.9 3.6E+02 0.0078 27.0 11.9 31 121-151 131-161 (342)
366 PRK00409 recombination and DNA 42.8 4.6E+02 0.0099 29.5 13.6 24 178-201 543-566 (782)
367 PF00435 Spectrin: Spectrin re 42.6 1.5E+02 0.0033 22.6 9.5 57 365-421 48-104 (105)
368 PRK06800 fliH flagellar assemb 42.5 2.6E+02 0.0057 25.3 9.8 37 372-408 73-109 (228)
369 PRK11020 hypothetical protein; 42.1 2E+02 0.0043 23.8 8.1 47 140-186 4-55 (118)
370 PRK04325 hypothetical protein; 42.1 1.5E+02 0.0033 22.5 7.1 7 179-185 26-32 (74)
371 PLN02320 seryl-tRNA synthetase 42.1 2.6E+02 0.0056 29.6 10.8 25 129-153 95-119 (502)
372 TIGR01843 type_I_hlyD type I s 41.0 3.9E+02 0.0084 26.8 23.5 15 169-183 81-95 (423)
373 PRK15396 murein lipoprotein; P 40.9 1.7E+02 0.0036 22.6 7.3 47 162-208 25-71 (78)
374 COG1382 GimC Prefoldin, chaper 40.7 2.2E+02 0.0047 23.9 11.8 19 202-220 75-93 (119)
375 PF13700 DUF4158: Domain of un 40.6 1.3E+02 0.0027 26.5 7.4 93 4-105 11-116 (166)
376 PRK10803 tol-pal system protei 40.1 1.8E+02 0.004 27.8 8.9 42 166-207 58-99 (263)
377 PF12001 DUF3496: Domain of un 40.0 2.2E+02 0.0047 23.6 8.9 34 166-199 4-38 (111)
378 KOG4637 Adaptor for phosphoino 39.8 4.1E+02 0.009 26.8 12.1 70 353-422 155-241 (464)
379 PF14775 NYD-SP28_assoc: Sperm 39.6 93 0.002 22.6 5.1 48 103-154 6-53 (60)
380 KOG4370 Ral-GTPase effector RL 39.6 4.4E+02 0.0096 27.1 16.1 46 70-115 249-294 (514)
381 TIGR01005 eps_transp_fam exopo 39.5 5.7E+02 0.012 28.4 24.7 18 119-136 166-183 (754)
382 KOG2129 Uncharacterized conser 39.3 4.4E+02 0.0096 27.0 24.9 51 317-374 251-301 (552)
383 PF00435 Spectrin: Spectrin re 39.2 1.7E+02 0.0037 22.3 11.0 19 347-365 76-94 (105)
384 TIGR01069 mutS2 MutS2 family p 39.2 3.1E+02 0.0067 30.8 11.6 23 1-23 1-23 (771)
385 PF14712 Snapin_Pallidin: Snap 39.1 1.8E+02 0.004 22.6 10.8 25 195-219 62-86 (92)
386 KOG4098 Molecular chaperone Pr 38.9 2.5E+02 0.0053 24.0 10.8 35 123-157 18-52 (140)
387 PRK15178 Vi polysaccharide exp 38.9 4.7E+02 0.01 27.2 13.6 42 376-417 318-364 (434)
388 KOG4005 Transcription factor X 38.8 3.4E+02 0.0074 25.6 10.8 55 166-220 94-148 (292)
389 PHA03041 virion core protein; 38.6 1.2E+02 0.0027 26.0 6.4 57 370-426 91-147 (153)
390 KOG2189 Vacuolar H+-ATPase V0 38.5 1.1E+02 0.0023 33.8 7.5 90 101-202 35-132 (829)
391 PRK09973 putative outer membra 38.5 1.9E+02 0.0042 22.7 7.4 50 162-211 24-73 (85)
392 PF09403 FadA: Adhesion protei 38.4 2.5E+02 0.0053 23.8 13.2 42 320-361 28-69 (126)
393 KOG4571 Activating transcripti 38.4 2.8E+02 0.0061 26.9 9.5 31 366-396 256-286 (294)
394 PF08172 CASP_C: CASP C termin 38.4 1.4E+02 0.0029 28.5 7.5 59 120-185 79-137 (248)
395 PF10205 KLRAQ: Predicted coil 38.1 2.2E+02 0.0048 23.2 9.7 62 167-228 10-71 (102)
396 PF08647 BRE1: BRE1 E3 ubiquit 38.1 2.1E+02 0.0045 22.8 13.1 16 213-228 54-69 (96)
397 PF14182 YgaB: YgaB-like prote 38.0 1.9E+02 0.0041 22.3 9.6 58 129-186 2-64 (79)
398 PF04728 LPP: Lipoprotein leuc 37.6 1.5E+02 0.0033 21.3 7.9 44 374-417 12-55 (56)
399 PLN02678 seryl-tRNA synthetase 37.3 2E+02 0.0044 29.9 9.2 28 165-192 36-63 (448)
400 smart00540 LEM in nuclear memb 37.1 72 0.0016 21.7 3.9 39 5-50 2-41 (44)
401 PF02181 FH2: Formin Homology 37.0 4.4E+02 0.0095 26.3 14.2 35 8-42 92-131 (370)
402 PRK10361 DNA recombination pro 36.8 5.2E+02 0.011 27.1 22.7 23 394-416 151-177 (475)
403 PF07851 TMPIT: TMPIT-like pro 36.6 3.3E+02 0.0072 27.1 10.1 35 169-203 18-52 (330)
404 PF08581 Tup_N: Tup N-terminal 36.5 2E+02 0.0043 22.2 11.3 43 163-208 33-75 (79)
405 PF12004 DUF3498: Domain of un 36.2 12 0.00026 39.2 0.0 68 321-391 410-477 (495)
406 PF02183 HALZ: Homeobox associ 36.1 1.4E+02 0.003 20.3 6.2 11 188-198 10-20 (45)
407 PF13094 CENP-Q: CENP-Q, a CEN 35.8 3E+02 0.0064 24.0 13.6 29 125-154 19-47 (160)
408 PF05600 DUF773: Protein of un 35.5 5.7E+02 0.012 27.1 12.3 21 66-86 344-368 (507)
409 PF00307 CH: Calponin homology 35.2 23 0.00049 28.2 1.5 36 90-129 70-107 (108)
410 PF06120 Phage_HK97_TLTM: Tail 35.1 4.5E+02 0.0097 25.8 19.0 12 405-416 198-209 (301)
411 TIGR00414 serS seryl-tRNA synt 34.9 2.4E+02 0.0051 29.1 9.2 27 166-192 34-60 (418)
412 PRK12704 phosphodiesterase; Pr 34.4 5.9E+02 0.013 27.1 20.5 13 409-421 194-206 (520)
413 PF13815 Dzip-like_N: Iguana/D 34.3 2.7E+02 0.0058 23.0 9.8 14 100-113 38-51 (118)
414 PF14282 FlxA: FlxA-like prote 34.3 2.5E+02 0.0055 22.8 8.2 19 198-216 52-70 (106)
415 COG0752 GlyQ Glycyl-tRNA synth 34.3 28 0.0006 32.8 2.1 41 31-74 84-124 (298)
416 PF08424 NRDE-2: NRDE-2, neces 33.6 64 0.0014 31.8 4.8 63 26-98 108-170 (321)
417 PF05335 DUF745: Protein of un 33.6 3.7E+02 0.008 24.4 14.1 59 171-229 104-162 (188)
418 PF15272 BBP1_C: Spindle pole 33.3 3.8E+02 0.0083 24.5 20.5 56 196-251 4-60 (196)
419 KOG1853 LIS1-interacting prote 33.2 4.4E+02 0.0095 25.1 21.1 53 315-375 136-188 (333)
420 PRK05431 seryl-tRNA synthetase 32.6 3.2E+02 0.007 28.2 9.8 30 164-193 30-59 (425)
421 PF13166 AAA_13: AAA domain 32.2 7.1E+02 0.015 27.3 26.6 8 412-419 463-470 (712)
422 PF02994 Transposase_22: L1 tr 32.0 1.6E+02 0.0034 29.8 7.3 15 346-360 146-160 (370)
423 PF09744 Jnk-SapK_ap_N: JNK_SA 32.0 3.6E+02 0.0078 23.8 17.6 16 83-98 7-22 (158)
424 PF14630 ORC5_C: Origin recogn 31.6 70 0.0015 30.7 4.5 84 5-95 2-96 (271)
425 PRK10698 phage shock protein P 31.4 4.3E+02 0.0094 24.6 17.5 18 317-334 57-74 (222)
426 KOG0241 Kinesin-like protein [ 31.0 5.1E+02 0.011 29.7 11.0 54 39-98 304-358 (1714)
427 TIGR00219 mreC rod shape-deter 31.0 1.4E+02 0.003 29.0 6.5 16 166-181 70-85 (283)
428 PF11172 DUF2959: Protein of u 30.8 4.3E+02 0.0092 24.3 14.7 37 120-156 64-100 (201)
429 PF12126 DUF3583: Protein of u 30.8 5.2E+02 0.011 25.2 15.6 21 261-281 132-152 (324)
430 PF03999 MAP65_ASE1: Microtubu 30.6 36 0.00079 36.9 2.6 29 389-417 322-350 (619)
431 PF02994 Transposase_22: L1 tr 30.5 1E+02 0.0022 31.2 5.6 12 174-185 110-121 (370)
432 PF15397 DUF4618: Domain of un 30.5 4.9E+02 0.011 24.9 29.0 58 193-250 77-134 (258)
433 cd07673 F-BAR_FCHO2 The F-BAR 30.4 4.9E+02 0.011 24.9 22.2 82 346-430 159-244 (269)
434 PF07139 DUF1387: Protein of u 30.4 5.3E+02 0.012 25.3 13.4 95 268-367 154-259 (302)
435 PRK09343 prefoldin subunit bet 30.2 3.2E+02 0.007 22.7 13.0 32 121-152 8-39 (121)
436 KOG3850 Predicted membrane pro 30.0 6E+02 0.013 25.8 17.1 115 171-290 262-379 (455)
437 KOG4005 Transcription factor X 29.7 4.5E+02 0.0097 24.8 9.0 56 169-224 90-145 (292)
438 PF05615 THOC7: Tho complex su 29.7 3.5E+02 0.0075 22.9 13.6 15 217-231 114-128 (139)
439 cd07665 BAR_SNX1 The Bin/Amphi 29.7 4.8E+02 0.01 24.6 28.8 118 158-291 18-136 (234)
440 TIGR03545 conserved hypothetic 29.3 7.4E+02 0.016 26.6 18.5 112 210-337 190-306 (555)
441 PF11068 YlqD: YlqD protein; 29.1 3.6E+02 0.0079 22.9 10.0 24 315-338 23-46 (131)
442 PRK13182 racA polar chromosome 29.0 3.4E+02 0.0074 24.3 8.1 13 76-88 40-52 (175)
443 TIGR01843 type_I_hlyD type I s 28.9 6E+02 0.013 25.4 25.0 24 172-195 77-100 (423)
444 PF13094 CENP-Q: CENP-Q, a CEN 28.7 3.9E+02 0.0085 23.2 9.8 59 122-180 22-80 (160)
445 KOG2196 Nuclear porin [Nuclear 28.5 5.2E+02 0.011 24.5 18.3 29 194-222 131-159 (254)
446 PF15450 DUF4631: Domain of un 28.1 7.4E+02 0.016 26.2 36.1 42 323-364 391-432 (531)
447 KOG4657 Uncharacterized conser 28.0 5.1E+02 0.011 24.3 15.9 67 169-235 86-152 (246)
448 PF05615 THOC7: Tho complex su 27.8 3.8E+02 0.0081 22.7 12.9 17 82-98 16-32 (139)
449 KOG2629 Peroxisomal membrane a 27.7 5.8E+02 0.013 24.8 14.7 36 9-47 34-71 (300)
450 PHA02119 hypothetical protein 27.4 54 0.0012 24.5 2.2 30 3-33 48-77 (87)
451 PRK10803 tol-pal system protei 27.2 4.5E+02 0.0097 25.1 9.2 34 162-195 68-101 (263)
452 cd07651 F-BAR_PombeCdc15_like 26.8 5.2E+02 0.011 24.0 21.9 12 394-405 186-197 (236)
453 PF05600 DUF773: Protein of un 26.8 7.8E+02 0.017 26.1 14.5 9 39-47 203-211 (507)
454 PRK13182 racA polar chromosome 26.8 3.9E+02 0.0085 23.9 8.1 24 129-152 87-110 (175)
455 KOG4460 Nuclear pore complex, 26.7 8.1E+02 0.018 26.2 20.3 41 169-209 602-642 (741)
456 PF07989 Microtub_assoc: Micro 26.7 2.9E+02 0.0063 21.0 8.1 71 157-227 2-73 (75)
457 PF10482 CtIP_N: Tumour-suppre 26.6 3.7E+02 0.0081 22.3 11.3 48 142-189 15-62 (120)
458 PRK06569 F0F1 ATP synthase sub 26.4 4.5E+02 0.0097 23.1 15.0 6 390-395 121-126 (155)
459 PRK15396 murein lipoprotein; P 26.2 3.1E+02 0.0067 21.2 7.7 45 372-416 32-76 (78)
460 PF12777 MT: Microtubule-bindi 25.8 6.7E+02 0.014 24.9 24.8 73 315-391 231-303 (344)
461 COG0172 SerS Seryl-tRNA synthe 25.6 6.3E+02 0.014 26.2 10.2 22 127-148 29-50 (429)
462 TIGR03798 ocin_TIGR03798 bacte 25.6 60 0.0013 23.7 2.2 24 9-33 25-48 (64)
463 PF12795 MscS_porin: Mechanose 25.5 5.6E+02 0.012 23.9 23.7 30 213-242 33-62 (240)
464 KOG0249 LAR-interacting protei 25.4 9.6E+02 0.021 26.6 23.5 261 159-420 4-278 (916)
465 PF04048 Sec8_exocyst: Sec8 ex 25.1 4.4E+02 0.0094 22.5 11.5 103 83-186 4-131 (142)
466 PF04977 DivIC: Septum formati 25.1 2.3E+02 0.005 21.0 5.6 42 163-204 18-59 (80)
467 PRK14143 heat shock protein Gr 24.9 3.6E+02 0.0078 25.5 7.8 52 161-212 66-117 (238)
468 PRK14154 heat shock protein Gr 24.9 5.6E+02 0.012 23.7 12.3 90 162-251 52-146 (208)
469 PF03961 DUF342: Protein of un 24.9 7.1E+02 0.015 25.8 10.9 78 124-202 331-408 (451)
470 PF08232 Striatin: Striatin fa 24.8 4.4E+02 0.0095 22.4 8.0 64 119-182 6-73 (134)
471 PF13747 DUF4164: Domain of un 24.8 3.5E+02 0.0075 21.3 11.4 82 138-223 5-86 (89)
472 KOG2629 Peroxisomal membrane a 24.7 5.8E+02 0.013 24.9 9.1 71 161-234 121-191 (300)
473 PLN02320 seryl-tRNA synthetase 24.7 5.5E+02 0.012 27.2 9.8 66 162-227 93-167 (502)
474 PRK14160 heat shock protein Gr 24.5 4.4E+02 0.0096 24.4 8.2 58 155-212 54-111 (211)
475 PF08598 Sds3: Sds3-like; Int 24.3 1.3E+02 0.0029 27.3 4.8 106 323-428 2-111 (205)
476 TIGR02209 ftsL_broad cell divi 24.2 2.9E+02 0.0063 20.9 6.1 43 195-237 22-66 (85)
477 PF10779 XhlA: Haemolysin XhlA 24.2 3.1E+02 0.0066 20.4 6.8 51 143-193 1-51 (71)
478 cd07671 F-BAR_PSTPIP1 The F-BA 24.1 6.1E+02 0.013 23.9 23.5 181 101-289 1-207 (242)
479 KOG2176 Exocyst complex, subun 23.9 1E+03 0.023 26.5 13.4 93 192-285 50-153 (800)
480 TIGR03319 YmdA_YtgF conserved 23.9 8.9E+02 0.019 25.7 17.0 117 293-411 27-143 (514)
481 PF07989 Microtub_assoc: Micro 23.8 3.3E+02 0.0072 20.7 8.4 70 138-207 4-74 (75)
482 PRK14153 heat shock protein Gr 23.7 5.7E+02 0.012 23.4 10.5 98 160-275 31-129 (194)
483 PF04012 PspA_IM30: PspA/IM30 23.7 5.7E+02 0.012 23.4 21.1 167 216-384 10-184 (221)
484 PF08657 DASH_Spc34: DASH comp 23.6 4.2E+02 0.0091 25.4 8.1 79 88-181 163-258 (259)
485 TIGR03319 YmdA_YtgF conserved 23.5 9E+02 0.02 25.7 22.7 154 267-420 25-199 (514)
486 KOG1760 Molecular chaperone Pr 23.4 4.5E+02 0.0098 22.1 9.7 70 116-185 19-118 (131)
487 PRK14140 heat shock protein Gr 23.3 4.3E+02 0.0093 24.1 7.7 50 163-212 38-87 (191)
488 PF05531 NPV_P10: Nucleopolyhe 23.2 3.5E+02 0.0075 20.7 7.2 62 267-328 4-65 (75)
489 TIGR02132 phaR_Bmeg polyhydrox 23.1 5.6E+02 0.012 23.1 14.5 126 83-240 54-179 (189)
490 TIGR02977 phageshock_pspA phag 22.7 6.1E+02 0.013 23.4 24.0 185 228-414 22-218 (219)
491 PRK00106 hypothetical protein; 22.6 9.6E+02 0.021 25.6 19.7 133 277-411 32-164 (535)
492 PF00170 bZIP_1: bZIP transcri 22.6 3E+02 0.0066 19.8 9.1 64 347-414 1-64 (64)
493 KOG4348 Adaptor protein CMS/SE 22.5 4.6E+02 0.01 27.1 8.3 60 168-230 568-627 (627)
494 PF06193 Orthopox_A5L: Orthopo 22.5 4.5E+02 0.0097 23.3 7.3 52 374-425 109-160 (166)
495 TIGR03495 phage_LysB phage lys 22.5 5E+02 0.011 22.3 10.3 77 149-225 20-96 (135)
496 PF03961 DUF342: Protein of un 22.4 5.2E+02 0.011 26.8 9.3 65 166-230 331-408 (451)
497 PF05384 DegS: Sensor protein 22.1 5.5E+02 0.012 22.6 20.2 153 174-336 4-157 (159)
498 PF06428 Sec2p: GDP/GTP exchan 22.0 1.1E+02 0.0024 24.8 3.3 83 128-210 2-85 (100)
499 PF04420 CHD5: CHD5-like prote 22.0 3.6E+02 0.0079 23.6 6.9 62 166-227 37-103 (161)
500 PRK14148 heat shock protein Gr 21.9 4.8E+02 0.01 23.9 7.8 52 161-212 39-90 (195)
No 1
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=7.1e-52 Score=398.67 Aligned_cols=412 Identities=24% Similarity=0.351 Sum_probs=324.4
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHHHHH
Q 014013 1 MSKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSV 79 (432)
Q Consensus 1 ms~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~ 79 (432)
|+.|+||+|+++|||.||++|||| ++..+|.+|||++|.++|+.|+ .|||++..+. ++..+.+..+.+||+.|.+|+
T Consensus 1 ~~~~~fP~L~~aEIv~~l~~~~i~-~at~ei~~PTs~~~~~lYe~il~~~mgl~~~~l-~~r~n~~~~~~EN~ei~~~sL 78 (446)
T KOG4438|consen 1 RNAYEFPRLSVAEIVICLKDAQIA-SATEEILTPTSDYVSPLYEVILEYYMGLDEEEL-LQRDNEALEQLENPEIHAESL 78 (446)
T ss_pred CCccccCCCCHHHHHHHHHhcCcc-cchhhccCCCcccchhHHHHHHHHHHhhhHHHH-hhhhHHHHhcccCHHHHHHHH
Confidence 789999999999999999999996 5556699999999999999999 9999984443 444455677889999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 014013 80 QIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELED-------KISQLNAEIAA 152 (432)
Q Consensus 80 ~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~-------~i~~l~~~i~~ 152 (432)
.+..|+++|..||..|||+ ||++.||++|++.||. ++||+++| |+.||++++++.. ....++.++++
T Consensus 79 ~~~~l~ki~~~Fl~~i~v~-dF~~~DLlkPes~Rtq----~~LSavvN-fa~fRe~k~~~~~~~~~q~eslle~~~q~da 152 (446)
T KOG4438|consen 79 QFKLLCKILDMFLMNIGVL-DFSFKDLLKPESSRTQ----RFLSAVVN-FALFREEKMDLYRPFIQQLESLLELRKQLDA 152 (446)
T ss_pred HHHHHHHHHHHHHHhcCcC-CCchhhhcCccHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999999999 99999999 9999999998633 22234444444
Q ss_pred HH----HHHH-------hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHH
Q 014013 153 YN----EVRE-------RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA-LDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 153 ~~----~k~~-------~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e-l~~~l~~~~~~l~~l~~e~ 220 (432)
.. .+.+ ...+.+++++..|++|...|.++...++.+..++.+++..... ....++.+.+.++++++..
T Consensus 153 ~~qq~~~ele~~d~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~ 232 (446)
T KOG4438|consen 153 KYQQALKELERFDEDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENA 232 (446)
T ss_pred HHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2222 3566789999999999999999999999999999999988888 5566778888899999999
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 221 ADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEK----TTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSI 296 (432)
Q Consensus 221 ~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~----~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~ 296 (432)
..|+++||+||++|+..+++|+..+.+ ++.+|+.|+++ .+++..+.-+..|+..+++.+++...+..+.+..
T Consensus 233 ~~LktqIV~sPeKL~~~leemk~~l~k----~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~ 308 (446)
T KOG4438|consen 233 NCLKTQIVQSPEKLKEALEEMKDLLQK----EKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETK 308 (446)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 999999999999999999999998854 45555555443 2344444444557777777777766544443332
Q ss_pred HHHHHHHHHhhcchHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHH
Q 014013 297 EKDYKSLKARLNDDVVLDKSLEA--KLIERQGKVEQLD-ELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKK 373 (432)
Q Consensus 297 e~~~~~~k~~l~~~~~~~~~l~~--ql~~~~~k~~~l~-~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ 373 (432)
-..++..-....-.......+.. ....|.+++-.+. +.....+....++.++..+.++...+.|..++++|+.+...
T Consensus 309 ~v~lke~~~Le~q~e~~~~e~~~lk~~e~~~kqL~~~~kek~~~~Qd~~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~k 388 (446)
T KOG4438|consen 309 VVELKEILELEDQIELNQLELEKLKMFENLTKQLNELKKEKESRRQDLENRKTESVKAMMDDNIEKYNVVRQKRNAKVKK 388 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhccHHHH
Confidence 22222211000000000011111 1234555554444 34445566667778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014013 374 VEAVVTEVDAITS--KTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLL 424 (432)
Q Consensus 374 ie~~~~~i~~ie~--~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~ 424 (432)
++.....+..++. +++..++.|+..+.+|..+|..|..||..|+++|...|
T Consensus 389 ie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AEl~~~m 441 (446)
T KOG4438|consen 389 IEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAELKRIM 441 (446)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999998765
No 2
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=100.00 E-value=5.6e-35 Score=255.89 Aligned_cols=133 Identities=38% Similarity=0.718 Sum_probs=95.3
Q ss_pred CCCCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHHHHHH
Q 014013 2 SKFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQ 80 (432)
Q Consensus 2 s~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~ 80 (432)
++|+||+|+++||++||++||++ +|++||.||||++|++||++|| .++|++.++..+ +.+++.++++||++|.++++
T Consensus 5 ~~~~FP~L~~~eIv~~L~~~~~~-~t~~dl~kPt~e~v~~ly~~~L~~~~g~~~e~~~~-~~~~~~~~~~~pe~~~~~i~ 82 (146)
T PF03800_consen 5 NKYSFPLLSPDEIVNCLQECGIP-VTEEDLKKPTPEFVQKLYERFLETFLGISPEDIEQ-PMFEALESLEYPELHEESIP 82 (146)
T ss_dssp ------S--HHHHHHHHHHHT---HHHHC--G--HHHHHHHHHHHHHHHHT--CGGG---C---TT---S-GGGGTTTHH
T ss_pred ccCCCCCCCHHHHHHHHHHCCCC-cCHHHHcCCCHHHHHHHHHHHHHHHHCcCHHHHhh-hhHHHHhcccchhhHHHHHH
Confidence 36999999999999999999995 9999999999999999999999 999997554443 66778889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 81 IMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDK 142 (432)
Q Consensus 81 ~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~ 142 (432)
+++||++|++||..|||+ |||++||++|+|+||+ ++||++|| |.+||+++....++
T Consensus 83 ~l~l~~~~~~~~~~~gv~-DF~l~Dl~~P~~~R~~----~~LSalIN-F~~Fre~~~~~~~~ 138 (146)
T PF03800_consen 83 LLNLFRHLQKFLKDCGVP-DFSLSDLLKPDPKRTR----RILSALIN-FARFREERMDEYEE 138 (146)
T ss_dssp HHHHHHHHHHHHHHTT------HHHHHS--HHHHH----HHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-CCCHHHhcCCcHHHHH----HHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999 99999999 99999999865443
No 3
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=2.7e-06 Score=86.82 Aligned_cols=399 Identities=15% Similarity=0.193 Sum_probs=191.6
Q ss_pred HHHHHHHHhhcCcC-CCChhhcCCCChhHHHHHHHHHHHHhccCCC---CchhhhcHHHhhcCCC--------------c
Q 014013 11 ATEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHE---DDQGQLDFAALEQLEN--------------P 72 (432)
Q Consensus 11 ~~eIv~~L~~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~~~~~~---~~~~~~~~~~~~~~~~--------------p 72 (432)
.+.|..+|...||+ .++..-+.+|+.--...+|.++..+++-+-+ ....-+.+ .+-++-| |
T Consensus 76 ~~~I~~fL~engf~~~iS~k~l~~PS~KdF~~iFkfLY~~Ldp~y~f~~r~EeEV~~-ilK~L~YPf~~siSs~~a~gsp 154 (581)
T KOG0995|consen 76 IRQIYNFLVENGFSHPISIKLLMKPSVKDFIAIFKFLYGFLDPDYEFPERIEEEVVQ-ILKNLKYPFLLSISSLQAAGSP 154 (581)
T ss_pred HHHHHHHHHHcCCCCChhhhhcCCCccccHHHHHHHHHhccCCCcccchhHHHHHHH-HHHhCCCCcccchhhhccCCCC
Confidence 36789999999993 3899999999999999999988877742111 11111110 1112222 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcc-hhHhhh--hHHHHHHHHHHHHHHHH------------
Q 014013 73 DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRT-EDTKMN--LLRPIAEDLTRLDEQRS------------ 137 (432)
Q Consensus 73 e~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~-~~~~~~--~ls~iin~~~~f~eer~------------ 137 (432)
..+..-++++.+...|-++-...--. . |.-.+- .+..|+ +|.+++.-|..|...-.
T Consensus 155 H~WP~iL~mlhWlvdlI~~~t~~v~~-------~--~l~q~~~ed~~m~k~f~dy~~~~Y~~fl~g~d~~~~~~~Elk~~ 225 (581)
T KOG0995|consen 155 HNWPHILGMLHWLVDLIRINTALVED-------S--PLEQEEAEDKTMNKLFFDYTIRSYTSFLKGEDNSSELEDELKHR 225 (581)
T ss_pred CccHHHHHHHHHHHHHHHHhHHHhhc-------c--chhccchHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHH
Confidence 22333344444444443333322111 0 222221 133333 34455554555553111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 138 ------ELEDKISQLNAEIAAYNEVRE---RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 138 ------~l~~~i~~l~~~i~~~~~k~~---~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+...++.++...+.+.+++. .....++.++.....|+..+.....--.++......+......+...++.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~ 305 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEE 305 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 112233333333333333322 22334455555555555555555555555555555555666666666666
Q ss_pred hHHHHHHHHHHHHHHHhhhh---cCHH----------HHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHH
Q 014013 209 TEFDLVQSVQQNADLRSKIV---QSPE----------KLQRTLEEKKSIRE----EARDAEKLAMQSFQEKTTTLEVYQK 271 (432)
Q Consensus 209 ~~~~l~~l~~e~~~L~~~iv---~SPe----------~Lk~~i~el~~~l~----~l~~~e~~~l~~~q~~~~~l~~~~k 271 (432)
.+.++..++++++.|+..|. =||+ +|++.+.++...+. ++-+.+..+-..|....+.+.-|..
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~ 385 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNS 385 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666651 1232 33333333332221 1111111111133444444444444
Q ss_pred HHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 014013 272 TLKKMSKQS------------------------------AQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKL 321 (432)
Q Consensus 272 ~~~dv~~~~------------------------------~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql 321 (432)
+...|.-.+ ..+..+..++.. .+.+.-.+++.+++....+..+..-+
T Consensus 386 l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~---~~~~~~tLq~~~~~~~~~i~E~~~~l 462 (581)
T KOG0995|consen 386 LIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHE---AENELETLQEHFSNKASTIEEKIQIL 462 (581)
T ss_pred HHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443433331 233333333322 22334444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 014013 322 IERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQE 401 (432)
Q Consensus 322 ~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~ 401 (432)
..++.++..+....+.+.+++..-...++..++.|..+.-... -.-...+-.....+++++.+.+.+....+.++++
T Consensus 463 ~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~---l~~~~~m~~a~~~v~s~e~el~~~~~~~~eer~k 539 (581)
T KOG0995|consen 463 GEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLK---LVLNTSMKEAEELVKSIELELDRMVATGEEERQK 539 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666655555555555444444444444433332221 1112223334455666666666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 014013 402 LASKAEEIVEKFQQYTNSIGTLLP 425 (432)
Q Consensus 402 ~~~~~~~L~~~i~~Y~~~m~~~~~ 425 (432)
++.+...+-..|-..+-.|...|+
T Consensus 540 i~~ql~~~i~~i~~~k~~iqs~le 563 (581)
T KOG0995|consen 540 IAKQLFAVIDQISDFKVSIQSSLE 563 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666555555555544444443
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.80 E-value=0.0003 Score=81.28 Aligned_cols=61 Identities=10% Similarity=0.202 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCCCCCcccccCCCCCcch----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 86 SMVKEVVTTVNCPMNFTLKDLIRPDATRTE----DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA 148 (432)
Q Consensus 86 ~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~----~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~ 148 (432)
..+..++..+|++ .-++.-++-=+..++. .++..+|..+.. +..|..........+.++..
T Consensus 120 ~~~~~~l~~~~~~-~~~~~~~~qg~~~~~~~~~~~~r~~~~~~~~g-~~~~~~~~~~~~~~l~~~~~ 184 (1164)
T TIGR02169 120 SEIHDFLAAAGIY-PEGYNVVLQGDVTDFISMSPVERRKIIDEIAG-VAEFDRKKEKALEELEEVEE 184 (1164)
T ss_pred HHHHHHHHHcCCC-cCcceEEecchHHHHHCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHH
Confidence 4577888888886 3223222211111111 233356666655 66666555554443333333
No 5
>PRK03918 chromosome segregation protein; Provisional
Probab=98.63 E-value=0.00099 Score=74.98 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=17.3
Q ss_pred HHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHH
Q 014013 89 KEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAE 127 (432)
Q Consensus 89 ~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin 127 (432)
.-|...+.|+ .-.+..++.+...|. .+|..+..
T Consensus 124 ~~f~~~~~~~-Qg~~~~~~~~~~~r~-----~~~~~~~~ 156 (880)
T PRK03918 124 HVFLNAIYIR-QGEIDAILESDESRE-----KVVRQILG 156 (880)
T ss_pred HHhceeEEEe-ccchHHHhcCcHHHH-----HHHHHHhC
Confidence 3445556666 555566665334443 45666554
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.60 E-value=0.00088 Score=66.05 Aligned_cols=283 Identities=17% Similarity=0.241 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~-~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
-+..+-++|+.|-+.-..++..+..|..+|..+..+... ....-.-...++..+...|..+......+..++..++.+.
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~ 84 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEEL 84 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHH
Confidence 456777888888888888899999999998888877432 2223455667778888888888888888888888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH---HHHHHHHHHHHHHHHHHHHH---HHHHHHh-H-HHHHHHHH----
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSP---EKLQRTLEEKKSIREEARDA---EKLAMQS-F-QEKTTTLE---- 267 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP---e~Lk~~i~el~~~l~~l~~~---e~~~l~~-~-q~~~~~l~---- 267 (432)
..+..+++........+..++..|+..+-..- ..|...+..|+..+.-++.. |...++. + ...+..++
T Consensus 85 ~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~ 164 (312)
T PF00038_consen 85 EDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRS 164 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeeccccc
Confidence 88888888877777777777777775543221 12222333333322111110 1111111 1 01111111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 268 -VYQKTLKKMSKQSAQMQAILEQVNSAK-S----IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKE 341 (432)
Q Consensus 268 -~~~k~~~dv~~~~~~l~~~~~~~~~~k-e----~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~ 341 (432)
.+..++.+|...+. ..+.+.+ + ...++..++......+.....+...+..+..+++.|...+..++.
T Consensus 165 ~dL~~~L~eiR~~ye------~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~- 237 (312)
T PF00038_consen 165 SDLSAALREIRAQYE------EIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRA- 237 (312)
T ss_dssp --HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccchhhhhhHHHHHH------HHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhcccc-
Confidence 12222333333321 1111111 1 112222222222222222334444444555555555544444322
Q ss_pred HhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 342 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 342 ~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
+...+...+..+...+ ..++...+..+.....++..+..+|+.. ..+.+.+.+-...|...|.-|..=+
T Consensus 238 ---~~~~Le~~l~~le~~~---~~~~~~~~~~i~~le~el~~l~~~~~~~----~~ey~~Ll~~K~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 238 ---KNASLERQLRELEQRL---DEEREEYQAEIAELEEELAELREEMARQ----LREYQELLDVKLALDAEIATYRKLL 306 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---chhhhhhhHHHHHHHH---HHHHHHHHHhhhccchhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2233334444444444 2334444455555555566555555555 4455677788888888888887543
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.59 E-value=0.00087 Score=77.51 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSEL 139 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l 139 (432)
.+..+...+.++......+
T Consensus 178 ~l~~~~~~l~el~~~~~~L 196 (1164)
T TIGR02169 178 ELEEVEENIERLDLIIDEK 196 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444433333
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.57 E-value=0.0025 Score=73.68 Aligned_cols=55 Identities=13% Similarity=0.369 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCC-CCC------cccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 88 VKEVVTTVNCPM-NFT------LKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLN 147 (432)
Q Consensus 88 ~~~~~~~~gv~~-DFt------~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~ 147 (432)
+..++..+|+.. +|+ +..|...+|...+ .++..++. +..|...+....+.+.++.
T Consensus 124 ~~~~l~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~t~~nL~r~~ 185 (1179)
T TIGR02168 124 IQDLFLDTGLGKRSYSIIEQGKISEIIEAKPEERR----AIFEEAAG-ISKYKERRKETERKLERTR 185 (1179)
T ss_pred HHHHHhccCCCcccchheecccHHHHHcCCHHHHH----HHHHHHcc-HHHHHHHHHHHHHHHHHHH
Confidence 567777777761 222 1122222444333 66666665 6666665555444444333
No 9
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.56 E-value=0.0012 Score=65.95 Aligned_cols=218 Identities=14% Similarity=0.131 Sum_probs=115.9
Q ss_pred HHHHHHHHhhcCc--CCCChhhcCCCChhHHHHHHHHHHHHhc-cCCC--CchhhhcHHHhhcCCCc-------------
Q 014013 11 ATEIVTILTETEI--AVITENDLKNPNPDFVSDLYTRLLIFLD-VLHE--DDQGQLDFAALEQLENP------------- 72 (432)
Q Consensus 11 ~~eIv~~L~~~~~--~~~t~~dl~kPt~~~v~~ly~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~p------------- 72 (432)
..+|+.+|-+-|| | ++...+..|+.--.+-||.|+-.+++ .-+. .....+. ..+-.+.||
T Consensus 110 ~~~I~~yL~engfd~p-is~k~l~~PS~k~F~~IFK~LY~~lDp~f~F~~r~E~eV~-~~lKnL~YPfl~sI~kSqlsAI 187 (622)
T COG5185 110 QEEIYDYLKENGFDIP-ISIKFLKQPSQKGFIIIFKWLYLRLDPGFGFTKRIENEVY-QILKNLRYPFLESINKSQLSAI 187 (622)
T ss_pred HHHHHHHHHHcCCCcc-hhHHHhcCCccccHHHHHHHHHhccCCCCCcchhhHHHHH-HHHHhcCCchhhhhhHhHhhcc
Confidence 4689999988766 6 88899999999999999999887664 1111 1111110 122233333
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHH---------------
Q 014013 73 --DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQ--------------- 135 (432)
Q Consensus 73 --e~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~ee--------------- 135 (432)
.....-++++-+...+..-+..|--+ -.|+-- .....|.++. -+|.+++.-|-.|-+.
T Consensus 188 ~ph~Wp~iLgMlhW~V~li~~~~~~~~~-~~tl~q--q~~~e~~Vek--~lfdY~~~~Y~~fl~~~~~~~~~e~Elk~~f 262 (622)
T COG5185 188 GPHNWPKILGMLHWMVRLIIKLDMCLQP-LKTLDQ--QDRYELMVEK--LLFDYFTESYKSFLKLEDNYEPSEQELKLGF 262 (622)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHhh-hchHhh--ccHHHHHHHH--HHHHHHHHHHHHHhcCCCccCchHHHHHHHH
Confidence 22233444444444444444445433 222211 0011122200 2555666556555531
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHh---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 136 ---RSELEDKISQLNAEIAAYNEVRER---ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 136 ---r~~l~~~i~~l~~~i~~~~~k~~~---~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
-..+...++.++.+.+.+..++.+ ....++.++.+...|+.....+..--.++.....++-.....|...++..
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~k 342 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELK 342 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 112344566666666666555543 23345555566666666555555555555555555555555666666666
Q ss_pred HHHHHHHHHHHHHHHhhhh---cCHHHHH
Q 014013 210 EFDLVQSVQQNADLRSKIV---QSPEKLQ 235 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~iv---~SPe~Lk 235 (432)
+.++..++..++.|+.++. -||+..+
T Consensus 343 Eeei~~L~~~~d~L~~q~~kq~Is~e~fe 371 (622)
T COG5185 343 EEEIKALQSNIDELHKQLRKQGISTEQFE 371 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHhcCCCHHHHH
Confidence 6666666666666666652 3554444
No 10
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=0.0018 Score=66.74 Aligned_cols=227 Identities=14% Similarity=0.247 Sum_probs=112.9
Q ss_pred CCCCCCCCHHHHHHHHhhcCcC-CCChhhcCCC-C---hhHHHHHHHHHHHHhccCCCCchhhhcHHHhh--cCCCchhH
Q 014013 3 KFDYPRLSATEIVTILTETEIA-VITENDLKNP-N---PDFVSDLYTRLLIFLDVLHEDDQGQLDFAALE--QLENPDLH 75 (432)
Q Consensus 3 ~~~fP~l~~~eIv~~L~~~~~~-~~t~~dl~kP-t---~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~--~~~~pe~~ 75 (432)
.|-||.==..|++.||.++|.| ..+..-+.-| + -+.|-....|++....+... ..+ .++-.+--
T Consensus 119 ~y~f~~r~EeEV~~ilK~L~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~~t~---------~v~~~~l~q~~~e 189 (581)
T KOG0995|consen 119 DYEFPERIEEEVVQILKNLKYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRINTA---------LVEDSPLEQEEAE 189 (581)
T ss_pred CcccchhHHHHHHHHHHhCCCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHHhHH---------HhhccchhccchH
Confidence 3667755568999999999986 1222233222 2 34555666777733322101 111 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 014013 76 VRSVQIMKLYSMVKEVVTTV-NCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA---EIA 151 (432)
Q Consensus 76 ~~s~~~l~~~~~~~~~~~~~-gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~---~i~ 151 (432)
++++.-+-|-..|+.+...+ |-+ ||+ ++-.-.-.|+. ..+..+.++++++......+.+.+...+. .+.
T Consensus 190 d~~m~k~f~dy~~~~Y~~fl~g~d-~~~--~~~~Elk~~l~----~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~e 262 (581)
T KOG0995|consen 190 DKTMNKLFFDYTIRSYTSFLKGED-NSS--ELEDELKHRLE----KYFTSIANEIEDLKKTNRELEEMINEREKDPGKEE 262 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc-ccc--hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH
Confidence 23333122222233333333 555 643 33344455677 77777888888888877776655553221 222
Q ss_pred HHHHHHHh-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHH
Q 014013 152 AYNEVRER-------ELPLVQEVDAKVKELRQTIQDLNKHQVSLR------------------------TTLNKLKEKTG 200 (432)
Q Consensus 152 ~~~~k~~~-------~~~~i~el~~e~~eLe~~L~~l~~~q~~l~------------------------~~~~~~k~e~~ 200 (432)
-++.+.+. -.+-+.++....+.+...|..++..+.... ++++....+++
T Consensus 263 slre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~ 342 (581)
T KOG0995|consen 263 SLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN 342 (581)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 22222221 111223333333333334444444333333 44555555555
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 245 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l 245 (432)
++...|..++..+..+.+++-.++..+...-+.++..+-++.+.+
T Consensus 343 ~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~ 387 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLI 387 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666666666666665544
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.54 E-value=0.0026 Score=73.58 Aligned_cols=54 Identities=6% Similarity=0.097 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014013 370 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTL 423 (432)
Q Consensus 370 ~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~ 423 (432)
...+.+.+......++.-|.++...+..--......|..+..+|..++..+...
T Consensus 998 l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf~~ 1051 (1179)
T TIGR02168 998 LKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVFPK 1051 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666655555444444567777888888777777653
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=0.0016 Score=76.21 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 142 KISQLNAEIAAYNEVRERE--LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 142 ~i~~l~~~i~~~~~k~~~~--~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
++..++.+++++..+.... ...++++..+...++.++..+......+..+......+...|
T Consensus 800 ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 800 ELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333221 123455555666666555555555444444444444444444
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.44 E-value=0.0082 Score=69.56 Aligned_cols=58 Identities=12% Similarity=0.301 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCCCCCCc--------ccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 85 YSMVKEVVTTVNCPMNFTL--------KDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA 148 (432)
Q Consensus 85 ~~~~~~~~~~~gv~~DFt~--------~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~ 148 (432)
++-+..+|...|+. .=++ ..|+.-.|.-.+ .+|..+.- ...|..++.+.+.++.+...
T Consensus 121 ~~dI~~l~~~~gi~-~~~~~iV~QG~V~~i~~~kp~err----~iiEEaaG-v~~y~~r~~ea~~~L~~~~~ 186 (1163)
T COG1196 121 LKDIQDLLADSGIG-KESYSIVSQGKVEEIINAKPEERR----KLIEEAAG-VSKYKERKEEAERKLERTEE 186 (1163)
T ss_pred HHHHHHHHHhcCCC-CCCCceeecccHHHHHcCCHHHHH----HHHHHHhc-hHHHHHHHHHHHHHHHHHHH
Confidence 44688888888876 1111 133333333333 56666555 56666666655444444333
No 14
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.42 E-value=0.0058 Score=72.09 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHH
Q 014013 296 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 369 (432)
Q Consensus 296 ~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~ 369 (432)
.+-++..+..++.+....+..++.++.+++.++..|.+.++..+..+. +++ +....|..+++.+..+++.
T Consensus 1074 ke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~-K~e---k~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1074 KESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA-KAE---RQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777888888888888888888888776443222 222 2333344555555444444
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=98.42 E-value=0.0075 Score=67.97 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 190 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 190 ~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
..+..+..+...+..++..+...+......+..++
T Consensus 412 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 412 DFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 16
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.41 E-value=0.0022 Score=61.44 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 243 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~ 243 (432)
.++.+...++...+.++......+-.++..++.+..++..++..+-..+..+....+... ..-.|+..|.+.+..+--
T Consensus 44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~-~~~~~~~~ler~i~~Le~ 121 (294)
T COG1340 44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN-LGGRSIKSLEREIERLEK 121 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCCHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555554444443333333333 345677888888777643
No 17
>PRK02224 chromosome segregation protein; Provisional
Probab=98.40 E-value=0.0026 Score=71.61 Aligned_cols=22 Identities=9% Similarity=0.376 Sum_probs=10.6
Q ss_pred CcccccCCCCCcchhHhhhhHHHHHH
Q 014013 102 TLKDLIRPDATRTEDTKMNLLRPIAE 127 (432)
Q Consensus 102 t~~Dl~~P~~~R~~~~~~~~ls~iin 127 (432)
.+..++.-+|..-. .+|..+.+
T Consensus 139 e~~~~l~~~p~~R~----~ii~~l~~ 160 (880)
T PRK02224 139 EVNKLINATPSDRQ----DMIDDLLQ 160 (880)
T ss_pred ChHHHHcCCHHHHH----HHHHHHhC
Confidence 34444443333333 56666654
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=0.012 Score=69.11 Aligned_cols=193 Identities=11% Similarity=0.161 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhHHHHHHHHHHHHHHHhhhh-----cCHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE------KFSQTEFDLVQSVQQNADLRSKIV-----QSPEK 233 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~------~l~~~~~~l~~l~~e~~~L~~~iv-----~SPe~ 233 (432)
..+..+..+++.++..+......+...+..++.+...+.. .+..+..++..++..++.|...+. .+++.
T Consensus 747 p~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~e 826 (1311)
T TIGR00606 747 PELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ 826 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHH
Confidence 3444455555555555555555555555555555544322 112224445555555555544433 35566
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Q 014013 234 LQRTLEEKKSIREEARD-AEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVV 312 (432)
Q Consensus 234 Lk~~i~el~~~l~~l~~-~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~ 312 (432)
|+..+..++..+..+.. .+... ..+..+...+..+.....++... ...+...+......+.++..+...+...+.
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~-~e~e~~~~eI~~Lq~ki~el~~~---klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSE---KLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666555433211 01000 00111111111111101111111 111111222333344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhh
Q 014013 313 LDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 361 (432)
Q Consensus 313 ~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~ 361 (432)
.++.+..++..+...+..+.................++.++..++..+.
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1311)
T TIGR00606 903 EIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951 (1311)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444455555555444444433
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=98.38 E-value=0.0072 Score=68.05 Aligned_cols=36 Identities=14% Similarity=0.292 Sum_probs=16.4
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014013 358 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE 393 (432)
Q Consensus 358 ~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~ 393 (432)
..|..+....+..+..+..+...+..++.++..++.
T Consensus 659 ~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~ 694 (880)
T PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKK 694 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445545544444433
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.34 E-value=0.0059 Score=63.47 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCCCCCccc
Q 014013 86 SMVKEVVTTVNCPMNFTLKD 105 (432)
Q Consensus 86 ~~~~~~~~~~gv~~DFt~~D 105 (432)
+++..--..||+.--|.|.-
T Consensus 93 cYv~~~g~V~G~S~pFqf~~ 112 (546)
T PF07888_consen 93 CYVDQKGEVRGASTPFQFRA 112 (546)
T ss_pred EEECCCccEEEecCCcccCC
Confidence 33344445578776787763
No 21
>PRK01156 chromosome segregation protein; Provisional
Probab=98.33 E-value=0.0057 Score=69.03 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 153 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~ 153 (432)
.+|..+.. +..|......+.+.+..++..+..+
T Consensus 153 ~~ld~~~~-~~~~~~~~~~~~~~~~~~~~ei~~l 185 (895)
T PRK01156 153 KILDEILE-INSLERNYDKLKDVIDMLRAEISNI 185 (895)
T ss_pred HHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666665 5555544444444444444444333
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=0.0045 Score=68.43 Aligned_cols=119 Identities=15% Similarity=0.199 Sum_probs=73.4
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 014013 300 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT 379 (432)
Q Consensus 300 ~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~ 379 (432)
+......+...++.+...+..+.++...+..+++..+.+.. ....+..+..++..+|.+-..-+.+....+..+..
T Consensus 923 i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e----~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~ 998 (1293)
T KOG0996|consen 923 IAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTE----ELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKS 998 (1293)
T ss_pred HHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445444455555555555555555555554443322 22233344455555555555555555666666677
Q ss_pred HHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013 380 EVDAITSKTKFVKE---SGAAKLQELASKAEEIVEKFQQYTNSIGT 422 (432)
Q Consensus 380 ~i~~ie~~~~~~k~---~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~ 422 (432)
.+..+...+++++. .++..+.++..++..+.+.+..|...+.+
T Consensus 999 ~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~~~~~~k~~~~ 1044 (1293)
T KOG0996|consen 999 ELENIKKSENELKAERIDIENKLEAINGELNEIESKIKQPEKELKK 1044 (1293)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhhhhhHHHhhCc
Confidence 77777777777766 57888889999999999999999876654
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.24 E-value=0.027 Score=66.70 Aligned_cols=127 Identities=13% Similarity=0.227 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 014013 296 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK---ERNLKSEDATRAFENVKLEMESKRQDLEARQK 372 (432)
Q Consensus 296 ~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~---~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~ 372 (432)
.+-+++.++..+.+....+..|+.++......+.++..+.+.... .....+.++..++..|.++++.-+..+++.++
T Consensus 1046 le~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek 1125 (1930)
T KOG0161|consen 1046 LEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAER 1125 (1930)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555566666666555555555555444322 33344455555555555555554444444444
Q ss_pred HHHHHHHHHHHHHHhHHHH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013 373 KVEAVVTEVDAITSKTKFV----------KESGAAKLQELASKAEEIVEKFQQYTNSIGT 422 (432)
Q Consensus 373 ~ie~~~~~i~~ie~~~~~~----------k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~ 422 (432)
.......++.++..++.+. ....+.|+..+...++.=..+...++..|-+
T Consensus 1126 ~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~ 1185 (1930)
T KOG0161|consen 1126 QRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRK 1185 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444444444443333322 2345566667776666666666666666543
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.22 E-value=0.016 Score=63.39 Aligned_cols=148 Identities=19% Similarity=0.263 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 261 EKTTTLEVYQKTLKKMSKQSAQMQA-ILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE 339 (432)
Q Consensus 261 ~~~~~l~~~~k~~~dv~~~~~~l~~-~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~ 339 (432)
.....++.+.+-..++...+..++. +++.-..+-........+..........++.|.-.+.....++.++..++...+
T Consensus 462 e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 462 ERQEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4455566666666666666644443 222222222222222222222222233367777778888888888887776621
Q ss_pred HHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 340 KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 417 (432)
Q Consensus 340 ~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~ 417 (432)
...+.+..+..|..++.....+.+.-+.+|+.+.+-+...+.+-... +++|..+..+.....-|+..|.
T Consensus 542 -----~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~k----e~ki~~LekeLek~~~~~~~~~ 610 (775)
T PF10174_consen 542 -----ANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDK----EKKIGELEKELEKAQMHLAKQQ 610 (775)
T ss_pred -----hCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHhccchhhhh
Confidence 11233445555666665556666666666666665555444443333 5555555555444444444443
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.20 E-value=0.0036 Score=59.28 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 142 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 142 ~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
++..++.+++....+.......+..........++++..|++....+...++....+......+|..+............
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666665555555555666666667777777777777777777777777777777777777777777777777
Q ss_pred HHHhhhhcCHHHHHHHHHHHH
Q 014013 222 DLRSKIVQSPEKLQRTLEEKK 242 (432)
Q Consensus 222 ~L~~~iv~SPe~Lk~~i~el~ 242 (432)
.|..+...+-+++...=..++
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ 102 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLK 102 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 777777766666654333333
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.16 E-value=0.0097 Score=58.63 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=44.5
Q ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 152 AYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ-VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 152 ~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q-~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
.++.+...--..|..|+.+|..|+.+|..+.... .........|..+...+...|..+......+..+++++...+.
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~ 85 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELE 85 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHH
Confidence 3444444445567889999999999999988873 3444455666666666666666665555555555555554443
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.15 E-value=0.0026 Score=67.90 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
.+|..+.+ +..|..-.....+.+..++.+++.+..........+ ..+...+..+.... ......++.+.
T Consensus 154 ~il~~l~~-~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i-------~~~~~~i~~~~~~~---~~~i~~l~~e~ 222 (562)
T PHA02562 154 KLVEDLLD-ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQI-------KTYNKNIEEQRKKN---GENIARKQNKY 222 (562)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHH---HHHHHHHHHHH
Confidence 57777766 665554333344444455555444444333322222 22222222222211 23455555555
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
..+......+...+..++.++..+...+
T Consensus 223 ~~l~~~~~~l~~~l~~l~~~i~~l~~~i 250 (562)
T PHA02562 223 DELVEEAKTIKAEIEELTDELLNLVMDI 250 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5555555555555666666665555443
No 28
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=0.013 Score=58.50 Aligned_cols=164 Identities=10% Similarity=0.115 Sum_probs=100.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014013 256 MQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQ-GKVEQLDEL 334 (432)
Q Consensus 256 l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~-~k~~~l~~~ 334 (432)
+.+++.....+..|.+++.+.......++.....+...-+.+.+......++.-. .....+..|+..+. .+..+.+..
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~Le~q~e~~~~e~~~l-k~~e~~~kqL~~~~kek~~~~Qd~ 356 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILELEDQIELNQLELEKL-KMFENLTKQLNELKKEKESRRQDL 356 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666666555555554444333333333443222222111 11245667777666 777777777
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014013 335 QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT--EVDAITSKTKFVKESGAAKLQELASKAEEIVEK 412 (432)
Q Consensus 335 ~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~--~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~ 412 (432)
-+++.+...++++......+..+.+...+....+++...+..+.- ++.....+-...-.+++-+.--+..-.....+.
T Consensus 357 ~~r~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~~y~AE 436 (446)
T KOG4438|consen 357 ENRKTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVELYEAE 436 (446)
T ss_pred HHhhHHHHHHHHHHHHHHhcccchhhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999999999999999999999999988777775544 444444443333334444444444445555556
Q ss_pred HHHHHHHH
Q 014013 413 FQQYTNSI 420 (432)
Q Consensus 413 i~~Y~~~m 420 (432)
...||..+
T Consensus 437 l~~~m~ks 444 (446)
T KOG4438|consen 437 LKRIMIKS 444 (446)
T ss_pred HHHHHHhc
Confidence 66666543
No 29
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.11 E-value=0.023 Score=60.86 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013 210 EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el 241 (432)
...+..++.+...|...+..=|.-+...-..+
T Consensus 197 ~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~ 228 (569)
T PRK04778 197 REILDQLEEELAALEQIMEEIPELLKELQTEL 228 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666665555443333
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=98.06 E-value=0.041 Score=62.19 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=7.2
Q ss_pred CCCChhHHHHHHHHHH
Q 014013 32 KNPNPDFVSDLYTRLL 47 (432)
Q Consensus 32 ~kPt~~~v~~ly~~~l 47 (432)
.=||..==++|+..+.
T Consensus 29 ~G~NGsGKSsileAI~ 44 (895)
T PRK01156 29 TGKNGAGKSSIVDAIR 44 (895)
T ss_pred ECCCCCCHHHHHHHHH
Confidence 3444444444554444
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=0.038 Score=61.45 Aligned_cols=122 Identities=19% Similarity=0.301 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE-VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 200 (432)
Q Consensus 122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~-k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~ 200 (432)
++...++++.+.++...+...+......++.... ..+..+..-..+......++.....+++....+..+.-+.++...
T Consensus 329 ~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK 408 (1293)
T KOG0996|consen 329 LYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLK 408 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444544444444444443333331111 112222233445555566666666666666666666666666666
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 247 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~ 247 (432)
.+..++..+..++...+.++..++ ..|++....+.++...+..
T Consensus 409 ~~~~k~kKleke~ek~~~~~~e~e----~~pe~~~~~i~~~~~ei~~ 451 (1293)
T KOG0996|consen 409 RLTSKIKKLEKEIEKARRKKSELE----KAPEKARIEIQKCQTEIEQ 451 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH----hCchhhHhHHHHHHHHHHH
Confidence 666666666666666666654444 5677777666666655433
No 32
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.02 E-value=0.063 Score=62.87 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013 349 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGT 422 (432)
Q Consensus 349 ~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~ 422 (432)
+......+..+.+...+.+.....-++.......+....+..++..+.........++.+|.+.+..-.+....
T Consensus 289 ~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~ 362 (1822)
T KOG4674|consen 289 WKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSA 362 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 33445556666666666666666667777777777777777888888888888888888888887776666554
No 33
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.01 E-value=0.068 Score=62.82 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 74 LHVRSVQIMKLYSMVKEVVTT-VNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 152 (432)
Q Consensus 74 ~~~~s~~~l~~~~~~~~~~~~-~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~ 152 (432)
-|.-|+.-+...+..+.||+. ||.+-.+...|..++...|-. +| .+.+.++.++.....++...+..+..
T Consensus 241 ~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~-----li----EEAag~r~rk~eA~kkLe~tE~nL~r 311 (1486)
T PRK04863 241 ENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRV-----HL----EEALELRRELYTSRRQLAAEQYRLVE 311 (1486)
T ss_pred HHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHH-----HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777778888877 677644555566555554443 33 33355566555554444444444444
Q ss_pred HHHH
Q 014013 153 YNEV 156 (432)
Q Consensus 153 ~~~k 156 (432)
+...
T Consensus 312 I~di 315 (1486)
T PRK04863 312 MARE 315 (1486)
T ss_pred HHHH
Confidence 4333
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.98 E-value=0.032 Score=58.16 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=15.2
Q ss_pred CCChhhcCCCChhHHHHHHHHHH-HHhcc
Q 014013 25 VITENDLKNPNPDFVSDLYTRLL-IFLDV 52 (432)
Q Consensus 25 ~~t~~dl~kPt~~~v~~ly~~~l-~~~~~ 52 (432)
.|.+..|++|..+|-+-.|..-. .+.|+
T Consensus 76 ~F~ayyLPk~~~e~YqfcYv~~~g~V~G~ 104 (546)
T PF07888_consen 76 QFQAYYLPKDDDEFYQFCYVDQKGEVRGA 104 (546)
T ss_pred EECcccCCCCCCCeEEEEEECCCccEEEe
Confidence 45666666666665554454444 44444
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.98 E-value=0.017 Score=54.76 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 369 ARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 369 ~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
....+.+.....+..++..+..+ +.++......|..+...+..-+++|.
T Consensus 187 eaE~Rae~aE~~v~~Le~~id~l----e~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 187 EAENRAEFAERRVKKLEKEIDRL----EDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555566666666666666 55556666666666666666655553
No 36
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.91 E-value=0.025 Score=54.37 Aligned_cols=123 Identities=22% Similarity=0.301 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 124 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 203 (432)
Q Consensus 124 ~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~ 203 (432)
-+...+..+.+.|..+...+..+....++++.+..+....+.++..+.+++=.++.+++.....+...+..+-.....+.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444667777777777788888888888877777766667777777777777777777766666666666666666666
Q ss_pred HHhh---hhHHHHHHHHHHHHHHHhhhhcC---HH---HHHHHHHHHHHHHH
Q 014013 204 EKFS---QTEFDLVQSVQQNADLRSKIVQS---PE---KLQRTLEEKKSIRE 246 (432)
Q Consensus 204 ~~l~---~~~~~l~~l~~e~~~L~~~iv~S---Pe---~Lk~~i~el~~~l~ 246 (432)
...+ -..-.+..+..++.+|.-...++ |+ ++-..|.+++..+.
T Consensus 97 e~~~~~~~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le 148 (294)
T COG1340 97 EKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELE 148 (294)
T ss_pred HHhhhhhccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 6665 34556777788888887776444 43 34455556655553
No 37
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.81 E-value=0.023 Score=59.24 Aligned_cols=127 Identities=14% Similarity=0.238 Sum_probs=61.0
Q ss_pred CCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhcchhHHH
Q 014013 101 FTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR--------------ERELPLVQE 166 (432)
Q Consensus 101 Ft~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~--------------~~~~~~i~e 166 (432)
=+++++|.-.-...+ +++...-..-+.|.-+-..+.++++.++.........+ ...++.+..
T Consensus 84 s~ik~~ye~El~~ar----~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~ 159 (546)
T KOG0977|consen 84 SGIKAKYEAELATAR----KLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINT 159 (546)
T ss_pred cchhHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHH
Confidence 567777766655555 55555444344444444444444444333333321111 122333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG-----------ALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 231 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~-----------el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP 231 (432)
+..+++.++.++..|+.+...+..++..++.... ....-++++.|....-++++..+..+...+|
T Consensus 160 ~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~ 235 (546)
T KOG0977|consen 160 LKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDT 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc
Confidence 4444455555555555555554444444443221 1222334455666666677777777776666
No 38
>PRK11637 AmiB activator; Provisional
Probab=97.77 E-value=0.067 Score=55.21 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 014013 139 LEDKISQLNAEIAAYN 154 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~ 154 (432)
+.+++.+++.++.+..
T Consensus 45 ~~~~l~~l~~qi~~~~ 60 (428)
T PRK11637 45 NRDQLKSIQQDIAAKE 60 (428)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 39
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.75 E-value=0.12 Score=57.42 Aligned_cols=23 Identities=22% Similarity=-0.003 Sum_probs=14.5
Q ss_pred hcCCCChhHHHHHHHHHHHHhcc
Q 014013 30 DLKNPNPDFVSDLYTRLLIFLDV 52 (432)
Q Consensus 30 dl~kPt~~~v~~ly~~~l~~~~~ 52 (432)
-|.=|+..-=.-|++.+...||.
T Consensus 66 fI~G~NGSGKSAIltAl~lglG~ 88 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTALTLGLGG 88 (1074)
T ss_pred EeecCCCCcHHHHHHHHHHhhcc
Confidence 45556655556677777777764
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.73 E-value=0.19 Score=59.09 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
..+.++...|+.+=.-+......|..++..+-.+...+...+.++.+.
T Consensus 741 ~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~ 788 (1822)
T KOG4674|consen 741 EKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQ 788 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455555555555555555555444444333
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.57 E-value=0.15 Score=54.36 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=34.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
...++.+..+...+..++..++.....+.... ....+.+...+..+......+..++..|+..+
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~---~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i 243 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKN---GENIARKQNKYDELVEEAKTIKAEIEELTDEL 243 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444432 24455666666666666666666666666665
No 42
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.52 E-value=0.17 Score=56.73 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSL-RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l-~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
+++.....++.+..++++.+..+ ..+++.+.....+...++..+...+..+..+.+.++.
T Consensus 469 eL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 469 ELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444322222 2233333333334444444444444444444444433
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.23 Score=54.67 Aligned_cols=91 Identities=15% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK-- 392 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k-- 392 (432)
..++..+.....++++++.++...+-+ ......++.....+.+..+.+++.+++....+..++....
T Consensus 409 ~~~~t~~k~a~~k~e~~~~elk~~e~e-----------~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~l 477 (1174)
T KOG0933|consen 409 SEASTEIKQAKLKLEHLRKELKLREGE-----------LATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEAL 477 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH-----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 334444555666666666665543322 2222334444444555555666666666665555544221
Q ss_pred ----HhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 393 ----ESGAAKLQELASKAEEIVEKFQQY 416 (432)
Q Consensus 393 ----~~~e~ei~~~~~~~~~L~~~i~~Y 416 (432)
...-.-+..+..++..|.+.+.+|
T Consensus 478 ~q~~~~l~~~~~~lk~~~~~l~a~~~~~ 505 (1174)
T KOG0933|consen 478 KQRRAKLHEDIGRLKDELDRLLARLANY 505 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 112233445555555555555444
No 44
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.52 E-value=0.23 Score=54.53 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~ 220 (432)
.....+...+..++.+|+.....+..+.+.++.+-+++..+...++..+..+..++
T Consensus 261 ~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i 316 (1200)
T KOG0964|consen 261 DKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQI 316 (1200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Confidence 44455555555566666555555555555555555555444444444444333333
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.49 E-value=0.14 Score=51.66 Aligned_cols=13 Identities=0% Similarity=0.059 Sum_probs=9.2
Q ss_pred HHHHHHHHHcCCC
Q 014013 86 SMVKEVVTTVNCP 98 (432)
Q Consensus 86 ~~~~~~~~~~gv~ 98 (432)
..+..++..|+++
T Consensus 15 ~~~~~~~l~~~~~ 27 (420)
T COG4942 15 TILLASLLSAAVL 27 (420)
T ss_pred HHHHHHHHHhccc
Confidence 4566777778887
No 46
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.46 E-value=0.2 Score=52.42 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 014013 376 AVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTL 423 (432)
Q Consensus 376 ~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~ 423 (432)
...+.|..|+.++.+-+..|+..+..-..++.+|......-+.+|...
T Consensus 321 ~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq~L 368 (546)
T KOG0977|consen 321 ALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQKL 368 (546)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777776666666666666666666555543
No 47
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=97.40 E-value=0.28 Score=52.71 Aligned_cols=32 Identities=25% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 388 TKFVKESGAAKLQELASKAEEIVEKFQQYTNS 419 (432)
Q Consensus 388 ~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~ 419 (432)
|.+.+++.+.+.+.+...-..+..+|..--+.
T Consensus 370 i~e~k~nve~elqsL~~l~aerqeQidelKn~ 401 (1265)
T KOG0976|consen 370 IQEKKENVEEELQSLLELQAERQEQIDELKNH 401 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666665555555444333
No 48
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.37 E-value=0.34 Score=53.20 Aligned_cols=57 Identities=12% Similarity=0.264 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.......+..+......+..++..+.....++..+++.+..++.....++.+|...+
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L 165 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML 165 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666677777777777777777777788888888888888888888765
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.34 E-value=0.55 Score=54.85 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 014013 316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFE 354 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~ 354 (432)
.++.++..+..++..++.....+....+.+..++.....
T Consensus 820 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~ 858 (1201)
T PF12128_consen 820 ELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELK 858 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333333
No 50
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.013 Score=61.03 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=37.5
Q ss_pred CCCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH
Q 014013 3 KFDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL 47 (432)
Q Consensus 3 ~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l 47 (432)
.+|+--+++.||+.++.++|-|-+-+.|. .|-|++|.+|=..|=
T Consensus 269 ~~S~r~~~~~eVve~I~~lG~PvvVAtDV-tp~P~~V~KiAasf~ 312 (652)
T COG2433 269 LESRRGIDRSEVVEFISELGKPVVVATDV-TPAPETVKKIAASFN 312 (652)
T ss_pred eeccccCCHHHHHHHHHHcCCceEEEccC-CCChHHHHHHHHHcC
Confidence 36788899999999999999986666664 688999999988887
No 51
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.19 E-value=0.79 Score=53.58 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=5.8
Q ss_pred cccccCCCCCcch
Q 014013 103 LKDLIRPDATRTE 115 (432)
Q Consensus 103 ~~Dl~~P~~~R~~ 115 (432)
+.-|-.|+.....
T Consensus 590 L~~I~~pd~~~~e 602 (1201)
T PF12128_consen 590 LSAIDVPDYAASE 602 (1201)
T ss_pred hhhcCCchhhcCh
Confidence 3334356544444
No 52
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.12 E-value=0.27 Score=47.13 Aligned_cols=271 Identities=16% Similarity=0.245 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013 139 LEDKISQLNAEIAAYNEVREREL----PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 214 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~~k~~~~~----~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~ 214 (432)
+.++|.-|+.+|+.++..-...+ ..++-+...|..|+..|+- .-+.++..+..|..+.+.|+..-.-+.+.+.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKL---neE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKL---NEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 46677777777877766433222 2334444555555544431 1234455555555555555555555555555
Q ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014013 215 QSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLK----KMSKQSAQMQAILEQV 290 (432)
Q Consensus 215 ~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~----dv~~~~~~l~~~~~~~ 290 (432)
.-++..++|.+.|..--.+|-+++.+.....+.-.+++.. ||. .-+-...+-. ||+.....-+-++..+
T Consensus 81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlela----fqr---~rdEw~~lqdkmn~d~S~lkd~ne~LsQqL 153 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELA----FQR---ARDEWVRLQDKMNSDVSNLKDNNEILSQQL 153 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH----HHH---HhhHHHHHHHHhcchHHhHHHHhHHHHHHH
Confidence 5566666666666666666666666654322111111111 111 1111111111 2222211111122222
Q ss_pred H----HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHhHHHHHHHHHHHHHHhhHh
Q 014013 291 N----SAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ---LEKERNLKSEDATRAFENVKLEMESK 363 (432)
Q Consensus 291 ~----~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~---~~~~~~~~~~e~~~~~~~l~~e~~~~ 363 (432)
. +....+-.+-.+++.+.+...-+..+++-+.+.+-++..++.-... +-...-.+.+.+..++.+|.++---+
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2222333455557777777766778888888888888777766433 34456667778888899999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----h-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 364 RQDLEARQKKVEAVVTEVDAITSKTKFVKES----G-------AAKLQELASKAEEIVEKFQQYTNS 419 (432)
Q Consensus 364 ~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~----~-------e~ei~~~~~~~~~L~~~i~~Y~~~ 419 (432)
++.++......+...+-|-.|.....+.-.. . +..-+.+..+|.-|...+..|=.+
T Consensus 234 rQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qyEkE 300 (305)
T PF14915_consen 234 RQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQYEKE 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777777777777666655333332 2 223345777888888888877554
No 53
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.04 E-value=0.59 Score=49.56 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 76 VRSVQIMKLYSMVKEVVTT--VNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 153 (432)
Q Consensus 76 ~~s~~~l~~~~~~~~~~~~--~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~ 153 (432)
+.++..++|...+..|... ||+. =++.|.--.+..+.. +++|.+-.+....+-=.-.++..+.+-...+.+-
T Consensus 38 ~~~~qk~n~~~~l~~~~~~~~~~~~--egl~~~~~ense~ms----~LySKL~~EaEKIk~WKv~vesd~~qKErkLqen 111 (786)
T PF05483_consen 38 DPALQKVNFLPMLEQVDNSDSCHYQ--EGLKDSDFENSEPMS----RLYSKLYKEAEKIKKWKVQVESDLKQKERKLQEN 111 (786)
T ss_pred cHHHHHhcchhHHHHhccccchhhh--hccccccccccHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556677887777777766 6543 334444334455566 6777776655555433333344444544444444
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHH
Q 014013 154 NEVRERELPLVQEVDAKVKELRQTI 178 (432)
Q Consensus 154 ~~k~~~~~~~i~el~~e~~eLe~~L 178 (432)
+.-++.....|++|.=.|..|--+|
T Consensus 112 rk~IEaqrKaIqELQf~NE~lSlKL 136 (786)
T PF05483_consen 112 RKIIEAQRKAIQELQFENEKLSLKL 136 (786)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhHHH
Confidence 4444444445555555554444333
No 54
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.03 E-value=0.65 Score=49.79 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=45.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHHHHHHhhh
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF----DLVQSVQQNADLRSKI 227 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~----~l~~l~~e~~~L~~~i 227 (432)
....+.....+...+...|.+|...-...+..+..++..-..+...+....+ .+..+.+..+.+.+..
T Consensus 110 ~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f 181 (569)
T PRK04778 110 IESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEF 181 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH
Confidence 4556677777777888888888888888888888888888877777765533 3444444444444433
No 55
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.02 E-value=0.62 Score=49.37 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=55.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 014013 300 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT 379 (432)
Q Consensus 300 ~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~ 379 (432)
+..++.........+..|..++.....+++-+...-. .....+.++...+.++..+.+....+....+.++.....
T Consensus 325 l~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~----~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~ 400 (522)
T PF05701_consen 325 LERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE----KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKE 400 (522)
T ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333433333333445555555555554444433222 233345566666666666666665555555555555555
Q ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 380 EVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 380 ~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
++......+..+ +..+..+..++......-..-+..|.
T Consensus 401 E~e~~ka~i~t~----E~rL~aa~ke~eaaKasEa~Ala~ik 438 (522)
T PF05701_consen 401 EAEQTKAAIKTA----EERLEAALKEAEAAKASEALALAEIK 438 (522)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555 34444444444444444444444443
No 56
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=97.00 E-value=0.097 Score=45.85 Aligned_cols=137 Identities=21% Similarity=0.301 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCCCccccc---CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 014013 87 MVKEVVTTVNCPMNFTLKDLI---RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPL 163 (432)
Q Consensus 87 ~~~~~~~~~gv~~DFt~~Dl~---~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~ 163 (432)
++..-+...|++.+....|-. .-+..++. +.+..++....+-.+.+..+.+.+..+...++.+....+.....
T Consensus 6 yiN~~L~s~G~~~~~~~~~~~~~~~~~~~~vi----n~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~ 81 (151)
T PF11559_consen 6 YINQQLLSRGYPSDGLLFDSAEESEDNDVRVI----NCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQ 81 (151)
T ss_pred HHHHHHHHCCCCCCCccCcccccccccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 455666677877333333322 22233455 77777777777777778888888888888887777777776677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhh
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT----EFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~----~~~l~~l~~e~~~L~~~i 227 (432)
+.++..++...+.....+......+.......+.+...+...+... .-++-.-..|+++|+.++
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666555433 444555556666666554
No 57
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.99 E-value=0.91 Score=50.78 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014013 316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE 393 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~ 393 (432)
.++.++.+...++..|..+.+..+. -...++.+++.+++++.....++...+..+..+.+.+..+...|..++.
T Consensus 391 ~~~~~~~e~e~k~~~L~~evek~e~----~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 391 ELGSELEERENKLEQLKKEVEKLEE----QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433222 1122223333333333333334433334444444444444444444433
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.98 E-value=0.78 Score=50.01 Aligned_cols=41 Identities=7% Similarity=0.248 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
+..+..+++.++..+......+..+...++.+...+..++.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333333
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.84 E-value=1 Score=49.20 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQQ 337 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~~ 337 (432)
...|-..|.-+|.|-.+|+..+.+
T Consensus 589 ~e~L~~aL~amqdk~~~LE~sLsa 612 (697)
T PF09726_consen 589 TEVLMSALSAMQDKNQHLENSLSA 612 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Confidence 456777778888888888887765
No 60
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.79 E-value=0.26 Score=42.84 Aligned_cols=111 Identities=22% Similarity=0.242 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---HHHHHHH
Q 014013 144 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL---VQSVQQN 220 (432)
Q Consensus 144 ~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l---~~l~~e~ 220 (432)
..|+.+.+....+.......+.++..++..++.+|..|......+..+++.+......+...++...... ..+...+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rri 82 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRI 82 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhH
Confidence 3444555555555555566667777777777777777777777777777777777777777777665433 3456666
Q ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 221 ADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKL 254 (432)
Q Consensus 221 ~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~ 254 (432)
.-|...+..+..+|+...+.+...=.....++|.
T Consensus 83 q~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 83 QLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6666666666666666665554432223334443
No 61
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.69 E-value=0.56 Score=44.10 Aligned_cols=63 Identities=11% Similarity=0.230 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Q 014013 347 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEI 409 (432)
Q Consensus 347 ~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L 409 (432)
..++.+...|..+...+..+++..+..+......+..++..+...+..++.++..+..+-..+
T Consensus 99 ~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 99 QIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444444444444444444444433333
No 62
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.68 E-value=0.00043 Score=75.93 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013 345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~ 414 (432)
.++.++..+..|.........+.......+......|..+|.+....+...+.|.+-|...|-.+.-.++
T Consensus 602 ~lekak~vi~~Ld~k~~~~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k~~~~~EekLi~sa~y~~g~~~~ 671 (713)
T PF05622_consen 602 YLEKAKEVIKTLDPKQNPSSPEIQALKKQLQEKDRRIESLEKELEKSKQMREQEEKLIVSAWYNLGMRLH 671 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHhhccChhccCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333322233333344455556667777777777777777777777777776655554
No 63
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.65 E-value=1.2 Score=47.52 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQQLE---KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 390 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~~~~---~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~ 390 (432)
.+.++.++..+..+...+...+.... ......+.++...+.++..++..+...+...+..=...+..+..+...+..
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555442 244445555566666666666666666666555555556666666666666
Q ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 014013 391 VKESGAAK-LQELASKAEEIVEKFQQYTNSIGTLLPVT 427 (432)
Q Consensus 391 ~k~~~e~e-i~~~~~~~~~L~~~i~~Y~~~m~~~~~~~ 427 (432)
++...++- +=.+=..|......+..++..+...|+.+
T Consensus 426 ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~ 463 (560)
T PF06160_consen 426 IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQV 463 (560)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65443311 00112445555555555555555555443
No 64
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.56 E-value=2 Score=48.78 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=22.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 118 KMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE 158 (432)
Q Consensus 118 ~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~ 158 (432)
+-.++..|.+ +..|..-...+-+.+..++..++.+.....
T Consensus 156 r~~il~~l~~-l~~~e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 156 RKEILDELFG-LEKYEKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3367777776 666555555555555555555555554444
No 65
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.53 E-value=1.5 Score=46.98 Aligned_cols=73 Identities=10% Similarity=0.186 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQQLEKE---RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKF 390 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~---~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~ 390 (432)
.+.||..++.+..++.+--.-++.+-=. ...-...+-+.+..+.+.+..+....+..+. +..+|..++.+|..
T Consensus 514 Tr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~La~lh~~c~~Li~~v~~tG~----~~rEirdLe~qI~~ 589 (594)
T PF05667_consen 514 TRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLLASLHENCSQLIETVEETGT----ISREIRDLEEQIDT 589 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHH
Confidence 5667777777777776654444443111 2222333444567777777777666554332 34445544444443
No 66
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=1.8 Score=47.81 Aligned_cols=92 Identities=21% Similarity=0.319 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
+.+..+++++.++.+.+...-.+-.++..+++ .....+..+..+..+|+..|..|+....++.++..+.-+++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~-------~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k 302 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALD-------KVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK 302 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55556666566665555544333222222222 12334455666667777777777776666666666666666
Q ss_pred HHHHHHhhhhHHHHHHHHH
Q 014013 200 GALDEKFSQTEFDLVQSVQ 218 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~ 218 (432)
..+.-++.++..++..-.+
T Consensus 303 t~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 303 TKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred hhhhhhhHHHHHHhhhhhh
Confidence 6666666666666554433
No 67
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.49 E-value=1.8 Score=47.42 Aligned_cols=61 Identities=10% Similarity=0.220 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
+.+....|+.+|..-+..-.....-.++++.+..++.+-++=+.....-++...+.|+-.+
T Consensus 274 im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~ev 334 (1243)
T KOG0971|consen 274 IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEV 334 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555556666666666655544333333333333344333
No 68
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.47 E-value=2.9 Score=49.56 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 375 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie 375 (432)
...++.++.....++..+...+.....+...++++++..++.+..++....++.......+.
T Consensus 898 ~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~ 959 (1353)
T TIGR02680 898 AAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARG 959 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666655444455555555555555555555554444444333333
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.45 E-value=1.8 Score=46.86 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 014013 407 EEIVEKFQQY 416 (432)
Q Consensus 407 ~~L~~~i~~Y 416 (432)
..+.+||-.|
T Consensus 396 delKn~if~~ 405 (1265)
T KOG0976|consen 396 DELKNHIFRL 405 (1265)
T ss_pred HHHHHhhhhh
Confidence 3344444333
No 70
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=96.32 E-value=0.35 Score=44.55 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
=+|+=++.++-.+-.+.-.+++. .....+...++...+.... +.+++..+.+++..+.....+...+++......
T Consensus 107 LFL~lvI~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~ 181 (216)
T KOG1962|consen 107 LFLSLVIRRLHTLLRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKV 181 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555554443333332 2222233333332222111 778888889999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
..+..+.+.+..+..++-.+..+|+.+|.
T Consensus 182 ~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 182 DALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998875
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.31 E-value=2.4 Score=47.01 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF--SQTEFDLVQSVQQNADLRSKIVQSPEKLQ 235 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l--~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk 235 (432)
.+..-++.++.+|++.-..|-++..-++++...+..+= .+++.++..+++.+..|+..--+.-.++-
T Consensus 257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kte 325 (1195)
T KOG4643|consen 257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTE 325 (1195)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 33444566666666666666666666666666666555 45566677777777777666555444433
No 72
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.17 E-value=1.8 Score=44.03 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 234 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L 234 (432)
.++.+...++..++.+|..-.+.+..|...+..++.+...+...|.+....+..+++.|+.+...+...+..-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456677777777888888888888888888888888888888888888888888888877777776666554
No 73
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=96.16 E-value=1.1 Score=41.43 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 014013 316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM 360 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~ 360 (432)
.|...+.....++..++.+..++...+..+++.+...++.++..+
T Consensus 115 ~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~ 159 (207)
T PF05010_consen 115 TLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKH 159 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445556666666666666666666666666666666665555
No 74
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.12 E-value=2.4 Score=45.16 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
...+.+......-+.++..+-...+++|+.+...+..+...=..|...+.
T Consensus 425 k~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVe 474 (786)
T PF05483_consen 425 KQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVE 474 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33555555566666666677777777777777777776666666655443
No 75
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.09 E-value=1.3 Score=41.74 Aligned_cols=39 Identities=28% Similarity=0.308 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014013 371 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEK 412 (432)
Q Consensus 371 ~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~ 412 (432)
+..+..+..+...+.++...++.... ..+...|+++..+
T Consensus 148 e~e~~~i~e~~~~~~~~~~~L~~~l~---~ell~~yeri~~~ 186 (239)
T COG1579 148 EEEVAEIREEGQELSSKREELKEKLD---PELLSEYERIRKN 186 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHhc
Confidence 33444555556666666667766666 5566677777655
No 76
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=1.5 Score=41.82 Aligned_cols=63 Identities=17% Similarity=0.350 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013 179 QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241 (432)
Q Consensus 179 ~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el 241 (432)
..+......|-..+..+..+..++..++.+....+..++++|+.|+..|+.=-+.|+.....|
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444455555555556666666665555555555444444
No 77
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.98 E-value=1.9 Score=42.79 Aligned_cols=12 Identities=0% Similarity=0.136 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCC
Q 014013 87 MVKEVVTTVNCP 98 (432)
Q Consensus 87 ~~~~~~~~~gv~ 98 (432)
+++.||..+||.
T Consensus 15 sL~~FL~~~~I~ 26 (325)
T PF08317_consen 15 SLQDFLNMTGIR 26 (325)
T ss_pred CHHHHHHHhCce
Confidence 478999999997
No 78
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.95 E-value=0.95 Score=39.03 Aligned_cols=80 Identities=21% Similarity=0.389 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 127 EDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 127 n~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
+++-+-+.+...+.+.+..|+.+++.............+...+.+..|+.++..+......+..++..+..++..+...+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555444443333222222333334444444444444444444444444444444443333
No 79
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.91 E-value=3.5 Score=45.29 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHhhH--
Q 014013 326 GKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK-------KVEAVVTEVDAITSKTKFVKESGA-- 396 (432)
Q Consensus 326 ~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~-------~ie~~~~~i~~ie~~~~~~k~~~e-- 396 (432)
..++.+++-.+++.+.+.+-.-+++..++.++.-+.++.+.++..+. -|-.++..+..+..++.++++.-.
T Consensus 472 ~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 472 GDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33445555566666666666666777777666666555555544322 233445566666666666554222
Q ss_pred -HHH------HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 014013 397 -AKL------QELASKAEEIVEKFQQYTNSIGTLLPVTE 428 (432)
Q Consensus 397 -~ei------~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~ 428 (432)
.+. +-...-|-...+.-+.|-.-+..-+..+|
T Consensus 552 eees~q~~s~~~et~dyk~~fa~skayaraie~QlrqiE 590 (1243)
T KOG0971|consen 552 EEESQQPPSVDPETFDYKIKFAESKAYARAIEMQLRQIE 590 (1243)
T ss_pred HHHhcCCCCCchhhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 111 11223345555555555555554444443
No 80
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.87 E-value=3 Score=44.21 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014013 138 ELEDKISQLNAEIAAYNEVRE 158 (432)
Q Consensus 138 ~l~~~i~~l~~~i~~~~~k~~ 158 (432)
.+..++..-+.-+++++.+++
T Consensus 59 ~~l~ELe~akr~veel~~kLe 79 (522)
T PF05701_consen 59 QALSELESAKRTVEELKLKLE 79 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566555443
No 81
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.87 E-value=2.4 Score=43.15 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHhhcCcC---CCChhhcCCCChh---HHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHH
Q 014013 4 FDYPRLSATEIVTILTETEIA---VITENDLKNPNPD---FVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHV 76 (432)
Q Consensus 4 ~~fP~l~~~eIv~~L~~~~~~---~~t~~dl~kPt~~---~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~ 76 (432)
|.|.--=..|+++||..+..| .++...|.--+|. .+-+.+-|.+ .+-.. +-+.+ +.- .+..-+--|+..
T Consensus 154 f~F~~r~E~eV~~~lKnL~YPfl~sI~kSqlsAI~ph~Wp~iLgMlhW~V~li~~~--~~~~~-~~~-tl~qq~~~e~~V 229 (622)
T COG5185 154 FGFTKRIENEVYQILKNLRYPFLESINKSQLSAIGPHNWPKILGMLHWMVRLIIKL--DMCLQ-PLK-TLDQQDRYELMV 229 (622)
T ss_pred CCcchhhHHHHHHHHHhcCCchhhhhhHhHhhccCCcchHHHHHHHHHHHHHHHHH--HHHHh-hhc-hHhhccHHHHHH
Confidence 444444468999999998775 5677777655554 3444455555 21110 00000 000 011000112334
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 77 RSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQ 145 (432)
Q Consensus 77 ~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~ 145 (432)
+..-+=.|...-..||. |-+ |. .|.-+-+.-.+-.+...|-+.++++..+...+++.+..
T Consensus 230 ek~lfdY~~~~Y~~fl~--~~~-~~------~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e 289 (622)
T COG5185 230 EKLLFDYFTESYKSFLK--LED-NY------EPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQE 289 (622)
T ss_pred HHHHHHHHHHHHHHHhc--CCC-cc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444454455554 223 22 23322111111145556667777777777766655443
No 82
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=4.3 Score=45.50 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 014013 396 AAKLQELASKAEEIVEKFQQYTNSIGTLLPVTEI 429 (432)
Q Consensus 396 e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~~ 429 (432)
-.+.+.+...|....+....|..++...+.++..
T Consensus 443 ~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 443 KHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred hhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3455677777777777777777777766655543
No 83
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.73 E-value=4.5 Score=45.07 Aligned_cols=15 Identities=7% Similarity=0.195 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 398 KLQELASKAEEIVEK 412 (432)
Q Consensus 398 ei~~~~~~~~~L~~~ 412 (432)
+.+..-+.+..|.-|
T Consensus 579 elkk~idaL~alrrh 593 (1195)
T KOG4643|consen 579 ELKKYIDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 84
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=2.8 Score=42.49 Aligned_cols=89 Identities=13% Similarity=0.151 Sum_probs=56.4
Q ss_pred HHHHHHhhcCcCCCCh-hhcCCCChhHHHHHHHHHHHHhccCCCCchhhhcHHHhhcCCCchhHHHHHH-HHHHHHHHHH
Q 014013 13 EIVTILTETEIAVITE-NDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQ-IMKLYSMVKE 90 (432)
Q Consensus 13 eIv~~L~~~~~~~~t~-~dl~kPt~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~-~l~~~~~~~~ 90 (432)
=|...|...|. +|.+ +++.-=||+.|..+..+||...+-+..... . | ++.++++ -+++...+..
T Consensus 7 iimh~lrq~g~-sipp~~~lseFTteqvveavvrcL~~Idps~q~~~-----------s-~-llp~am~~Rfrla~siAq 72 (521)
T KOG1937|consen 7 IIMHALRQLGC-SIPPFEDLSEFTTEQVVEAVVRCLWKIDPSKQTIS-----------S-Y-LLPKAMTTRFRLANSIAQ 72 (521)
T ss_pred HHHHHHHHcCC-CCCCchhHhhcCHHHHHHHHHHHHHhcCccccccc-----------c-c-cCchHHHHHHHHHHHHHH
Confidence 47778888888 4666 899999999999999999955441101000 0 0 1122222 1334444445
Q ss_pred HHHHcCCCCCCCcccccCCCCCcch
Q 014013 91 VVTTVNCPMNFTLKDLIRPDATRTE 115 (432)
Q Consensus 91 ~~~~~gv~~DFt~~Dl~~P~~~R~~ 115 (432)
-..+.|++.|.++.-.+.|...=+|
T Consensus 73 ~ckdlgyrgD~gyqtfLypn~~dlR 97 (521)
T KOG1937|consen 73 YCKDLGYRGDTGYQTFLYPNINDLR 97 (521)
T ss_pred HHHHcCCCcccchhheecCCcccHH
Confidence 5556688778888888888877666
No 85
>PRK09039 hypothetical protein; Validated
Probab=95.67 E-value=1.2 Score=44.66 Aligned_cols=81 Identities=12% Similarity=0.184 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEK---ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~---~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~ 391 (432)
..++.++...+....+|+.....+.. ....+...+...+.+++..|.+..++....+.+|+.++.++..++..++..
T Consensus 84 ~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 84 ANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333322 445566666677777777777777777777777777777777777777666
Q ss_pred HHhh
Q 014013 392 KESG 395 (432)
Q Consensus 392 k~~~ 395 (432)
+...
T Consensus 164 e~~~ 167 (343)
T PRK09039 164 EKRD 167 (343)
T ss_pred HHHH
Confidence 5543
No 86
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.50 E-value=2.4 Score=40.34 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=34.6
Q ss_pred HhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013 386 SKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLP 425 (432)
Q Consensus 386 ~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~ 425 (432)
.+++.++.+...|.++=......++..++.|+..|-..|.
T Consensus 204 ~Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~yt~~lQ~~L~ 243 (247)
T PF06705_consen 204 EEIAALKNALALESQEREQSDDDIVQALNHYTKALQDGLR 243 (247)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 4555899999999999999999999999999998876654
No 87
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=5.5 Score=44.45 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el 241 (432)
.++++..+..+++++|.+....+..-...+..+.....+.. .+-+..+..+..++..++.++..|...+++...+-
T Consensus 742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~---~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~ 817 (1174)
T KOG0933|consen 742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAK---ANRERRLKDLEKEIKTAKQRAEESSKELEKRENEY 817 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556555555555544444433333322221 22244445555555555555555555555444443
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.47 E-value=5 Score=43.95 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=26.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 201 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e 201 (432)
....+.++..+|+.|+.++..|.+....=......+..+..+
T Consensus 458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~e 499 (697)
T PF09726_consen 458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAE 499 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888888877555444443333333333
No 89
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=95.45 E-value=2.2 Score=40.92 Aligned_cols=31 Identities=16% Similarity=0.347 Sum_probs=27.1
Q ss_pred hcCcC-CCChhhcCCCChhHHHHHHHHHHHHh
Q 014013 20 ETEIA-VITENDLKNPNPDFVSDLYTRLLIFL 50 (432)
Q Consensus 20 ~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~ 50 (432)
.+|+| .|+.+.+..|+-+.|-.|..|++.-+
T Consensus 2 ~LGypr~iSmenFrtPNF~LVAeiL~WLv~ry 33 (267)
T PF10234_consen 2 ALGYPRLISMENFRTPNFELVAEILRWLVKRY 33 (267)
T ss_pred CCCCCCCCcHHHcCCCChHHHHHHHHHHHHHc
Confidence 46776 68999999999999999999999555
No 90
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.44 E-value=1.6 Score=37.93 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQ 336 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~ 336 (432)
+..|..+...|..++..+..++.
T Consensus 117 v~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 117 VKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 35555555555555555544443
No 91
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.42 E-value=6.2 Score=44.65 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQV 186 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~ 186 (432)
..+.++.|++|+.-+..++.-+.
T Consensus 1463 ~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1463 RSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555666666666666655443
No 92
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.36 E-value=8.5 Score=45.88 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAY 153 (432)
Q Consensus 123 s~iin~~~~f~eer~~l~~~i~~l~~~i~~~ 153 (432)
...-..+.++.....++...+..|+.+....
T Consensus 303 e~tE~nL~rI~diL~ELe~rL~kLEkQaEkA 333 (1486)
T PRK04863 303 AAEQYRLVEMARELAELNEAESDLEQDYQAA 333 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444433
No 93
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=95.29 E-value=3 Score=40.22 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=100.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHhhhhcCHH
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS-------QTEFDLVQSVQQNADLRSKIVQSPE 232 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~-------~~~~~l~~l~~e~~~L~~~iv~SPe 232 (432)
....+.-|.++|.-|.++|..=+.....+..+++.+..+.+......+ +++..+.+.+.|.-.|+..+..+..
T Consensus 61 y~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S 140 (305)
T PF14915_consen 61 YNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVS 140 (305)
T ss_pred HhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHH
Confidence 344667888899999999988888888999999999888877776554 4567777888888888888888877
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 233 KLQRTLEEKKSIREEA----RDAEKL---AMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKA 305 (432)
Q Consensus 233 ~Lk~~i~el~~~l~~l----~~~e~~---~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~ 305 (432)
.|+...+=|+..|+.. ..++-. .-++++.++-.++.+.+ |+...-.. .+++++-...-++
T Consensus 141 ~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Qr---dL~Qtq~q----------~KE~e~m~qne~~ 207 (305)
T PF14915_consen 141 NLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQR---DLSQTQCQ----------IKEIEHMYQNEQD 207 (305)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----------HHHHHHHHHhHHH
Confidence 7776666666655321 111110 01234444444443333 33333222 2333333333344
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 306 RLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK 340 (432)
Q Consensus 306 ~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~ 340 (432)
+++.....-..++.+|.+++..--=|+.+++.-..
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333355666666666666666666555433
No 94
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.26 E-value=6.5 Score=43.92 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 204 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~ 204 (432)
++.+..+.++++.....+...+..++....++......+..+++....+...+..++.+...+..
T Consensus 635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~ 699 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN 699 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444455555554444444444445555555555666666666666666666566555544443
No 95
>PRK09039 hypothetical protein; Validated
Probab=95.26 E-value=3.7 Score=41.09 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013 351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 396 (432)
Q Consensus 351 ~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e 396 (432)
..+..|+.+++.+...++..+..++..+.+......+|.++....+
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444544555555543333
No 96
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=95.22 E-value=2.2 Score=38.90 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--
Q 014013 77 RSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDE---QRSELEDKISQLNAEIA-- 151 (432)
Q Consensus 77 ~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~e---er~~l~~~i~~l~~~i~-- 151 (432)
-++|++.-|..+-.-+..++++ |.. ..|....+-+..|.. .-..+..++..|-.--+
T Consensus 44 ~A~Glm~~f~~l~e~v~~l~id-d~~-----------------~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~ 105 (190)
T PF05266_consen 44 MAVGLMVTFANLAEKVKKLQID-DSR-----------------SSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQ 105 (190)
T ss_pred HHHHHHHHHHHHHHHHHHcccC-CcH-----------------HHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhH
Confidence 4677888888888888888888 531 333333333333332 11122333333221111
Q ss_pred -HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 152 -AYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 152 -~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
.+...+...+..+.+...+..+++..+.++......+......++..+......|..+......+++++.+.+
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222223333344455555555555555555555555555554444444444444444444444433
No 97
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.21 E-value=7.9 Score=44.68 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=19.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 014013 205 KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK 242 (432)
Q Consensus 205 ~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~ 242 (432)
++.+++..+..+..++..+.+.+..+-+++.+...++.
T Consensus 879 ~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~ 916 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELE 916 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHH
Confidence 33344555555555555555555555555554444443
No 98
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.20 E-value=0.0052 Score=68.62 Aligned_cols=92 Identities=18% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013 135 QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 214 (432)
Q Consensus 135 er~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~ 214 (432)
.+..+...++.+...++.+...+...+..+..++..+.++..++.+..+....+......+..++.++...+++....+.
T Consensus 153 ~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~ 232 (859)
T PF01576_consen 153 EKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLS 232 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666555555555555666666677777777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHHhh
Q 014013 215 QSVQQNADLRSK 226 (432)
Q Consensus 215 ~l~~e~~~L~~~ 226 (432)
.+......|.++
T Consensus 233 ~l~r~k~~L~~q 244 (859)
T PF01576_consen 233 QLQREKSSLESQ 244 (859)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 665544444433
No 99
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.20 E-value=4.9 Score=42.21 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=14.0
Q ss_pred ccCCCCCcchhHhhhhHHHHHHHHHHH
Q 014013 106 LIRPDATRTEDTKMNLLRPIAEDLTRL 132 (432)
Q Consensus 106 l~~P~~~R~~~~~~~~ls~iin~~~~f 132 (432)
...|+|.... .+..+++..|...
T Consensus 128 ~~~~dP~~Aa----~i~n~l~~~yi~~ 150 (498)
T TIGR03007 128 YEDKDPELAK----DVVQTLLTIFVEE 150 (498)
T ss_pred eeCCCHHHHH----HHHHHHHHHHHHh
Confidence 3457776666 6666666655444
No 100
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.05 E-value=6.2 Score=42.59 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 124 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE 158 (432)
Q Consensus 124 ~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~ 158 (432)
.+..+...+.+++......+..|...+.+++....
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444556677777777777777777777766554
No 101
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.03 E-value=5.7 Score=42.05 Aligned_cols=67 Identities=16% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 014013 108 RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 178 (432)
Q Consensus 108 ~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L 178 (432)
-|+|.-.. .-...+.+....-..++..+...+..++.++.+.+.+.....+..+.+......+...+
T Consensus 99 aPDP~pll----~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~i 165 (629)
T KOG0963|consen 99 APDPVPLL----ASAAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFI 165 (629)
T ss_pred CCCCchHH----HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 57775544 33333333232223344444445555555555555444433333333333333333333
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.01 E-value=2.8 Score=38.36 Aligned_cols=126 Identities=22% Similarity=0.317 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
+++|+=.-++..+..+-.++..++.++..+..-++.-.......+...+....+|-.-|...+.....+...+..++...
T Consensus 5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~ 84 (194)
T PF15619_consen 5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE 84 (194)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555566666666666666666666666665555555556667777777777778888888888888888888888
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhh----cCHHHHHHHHHHHHHHH
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKIV----QSPEKLQRTLEEKKSIR 245 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv----~SPe~Lk~~i~el~~~l 245 (432)
..+..++.+....+..+..++..|+..+. ..-++|.+.++.+...+
T Consensus 85 r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 85 RELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL 134 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 88888888888888888888888877543 33466666666655544
No 103
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.98 E-value=6.9 Score=42.74 Aligned_cols=13 Identities=8% Similarity=0.112 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHh
Q 014013 409 IVEKFQQYTNSIG 421 (432)
Q Consensus 409 L~~~i~~Y~~~m~ 421 (432)
|...+..+...|.
T Consensus 507 le~~~~~~f~~l~ 519 (650)
T TIGR03185 507 LEEEITKSFKKLM 519 (650)
T ss_pred HHHHHHHHHHHHh
Confidence 4444455555553
No 104
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.95 E-value=2.2 Score=36.84 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
.|..++++....+.....+...-+.-.+....++.+...+...+..+...+..+..+...|...
T Consensus 25 ~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 25 HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444555555555555555556666666666666666555433
No 105
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.90 E-value=6.6 Score=42.10 Aligned_cols=51 Identities=12% Similarity=0.177 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK 372 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~ 372 (432)
+..+-.....++.++..+...-. ..+++..++..++.++......+...++
T Consensus 324 ~e~l~~~~~~l~~eL~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 324 VEEVLEYAEKIKEELDQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555544433222 3444555566666666655555554433
No 106
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.90 E-value=3.8 Score=39.33 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-hhhcCHHHHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS-KIVQSPEKLQRTLEEKKSIREE 247 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~-~iv~SPe~Lk~~i~el~~~l~~ 247 (432)
.+...|..+.......-..+.........+...+...+..+...+..+-.+...+.. --..++..|.+.+.+-...+.+
T Consensus 59 ~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~e 138 (264)
T PF06008_consen 59 QDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEE 138 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444455555555555555555555555555554 3356778888888887777755
Q ss_pred HHH
Q 014013 248 ARD 250 (432)
Q Consensus 248 l~~ 250 (432)
+..
T Consensus 139 mr~ 141 (264)
T PF06008_consen 139 MRK 141 (264)
T ss_pred HHh
Confidence 543
No 107
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.78 E-value=2 Score=40.36 Aligned_cols=108 Identities=16% Similarity=0.232 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014013 316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 395 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~ 395 (432)
.+..+...+.+-..++...++....+. ..+.+.+..++.|..|+..-..++.....+|..++..|+..+.+....
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~---- 79 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKR---- 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344455555555556655555555555 477778888888888888888888777777777777777666555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccccccc
Q 014013 396 AAKLQELASKAEEIVEKFQQYTNS-IG-TLLPVTE 428 (432)
Q Consensus 396 e~ei~~~~~~~~~L~~~i~~Y~~~-m~-~~~~~~~ 428 (432)
...+..++.+|..|.++|+.-..+ ++ ..++.++
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~ 114 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLE 114 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 677788889999999999988888 43 2444444
No 108
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.71 E-value=9.8 Score=43.17 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014013 399 LQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 399 i~~~~~~~~~L~~~i~~Y~~~m 420 (432)
++.++.+|..=...+..|-.++
T Consensus 1712 l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1712 LKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred HHHHHHHHhhhhHHHHHHHHHh
Confidence 3444444444444444444443
No 109
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.34 E-value=8.8 Score=41.10 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE--KFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 238 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~--~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i 238 (432)
.+...+...++..|+.+...+-+...+++.+.+.++.+.+...- .|.+....|..+..|-++|..++.+-..-++...
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLR 480 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLR 480 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34446666777778888777777777777777777766544332 4556677777888888888877776666555433
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.29 E-value=5.1 Score=38.23 Aligned_cols=60 Identities=15% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013 175 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 234 (432)
Q Consensus 175 e~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L 234 (432)
..+|.++...+..+..+++.+..+..++..++.++...+.++.+++..|+..|-...+.+
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666666666666666666665555554433333
No 111
>PF13514 AAA_27: AAA domain
Probab=94.28 E-value=14 Score=43.10 Aligned_cols=75 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh----hcCHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI----VQSPEKLQRTLEEKKS 243 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i----v~SPe~Lk~~i~el~~ 243 (432)
..-..+-............+...+..+......+...+..+...+..........-..+ .-+|..+...+..+..
T Consensus 659 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~ 737 (1111)
T PF13514_consen 659 EEAEALLEEWEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEE 737 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 33333334444444444455555555555555666666666666665555555333333 2367777776655544
No 112
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.26 E-value=8.6 Score=40.69 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 014013 405 KAEEIVEKFQQYTNSI 420 (432)
Q Consensus 405 ~~~~L~~~i~~Y~~~m 420 (432)
++..+...+..|-.++
T Consensus 338 e~~l~~~el~~~~ee~ 353 (511)
T PF09787_consen 338 ELRLYYQELYHYREEL 353 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444444
No 113
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.26 E-value=0.012 Score=65.67 Aligned_cols=51 Identities=18% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 370 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 370 ~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
....+......+-.++..+..++..|+.++..=..++..+......-+.+|
T Consensus 480 ~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~l 530 (859)
T PF01576_consen 480 AEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESL 530 (859)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHH
Confidence 333333344444445555555555555555555545544444433333333
No 114
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=94.26 E-value=0.69 Score=42.44 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
|..+++.+.++..+++++..+..++.....+.+..+++++.+.+.|+.+...|+.....+..++..++.+-.+|...++-
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El 209 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVEL 209 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccc
Confidence 55666666666666666666655555555555555555556666666666666665556666666666666666555543
Q ss_pred h
Q 014013 209 T 209 (432)
Q Consensus 209 ~ 209 (432)
.
T Consensus 210 ~ 210 (290)
T COG4026 210 P 210 (290)
T ss_pred h
Confidence 3
No 115
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.18 E-value=9.5 Score=40.86 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=40.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH
Q 014013 159 RELPLVQEVDAKVKELRQTIQDLNKHQVS-LRT-TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP 231 (432)
Q Consensus 159 ~~~~~i~el~~e~~eLe~~L~~l~~~q~~-l~~-~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP 231 (432)
..+..++-+-.+.+.|+.+++.+++.... +-. ++.+..+.++.+...=+.+......-..-|.+|++++-.+.
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~e 487 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAE 487 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 34445555556666666666666554442 222 33444444444544445555555555666778888777765
No 116
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.10 E-value=0.037 Score=60.88 Aligned_cols=14 Identities=7% Similarity=0.190 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHh
Q 014013 37 DFVSDLYTRLLIFL 50 (432)
Q Consensus 37 ~~v~~ly~~~l~~~ 50 (432)
.-+..||..+..|+
T Consensus 70 ~NLk~l~~~i~~yy 83 (713)
T PF05622_consen 70 SNLKKLLRNIKSYY 83 (713)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44567777777544
No 117
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.98 E-value=14 Score=42.06 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 175 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 175 e~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
...+..+......+...+..+.....+....+.++...+......+..+...+..
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444433
No 118
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.54 E-value=0.71 Score=42.23 Aligned_cols=104 Identities=21% Similarity=0.317 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 201 (432)
Q Consensus 122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e 201 (432)
+..+..+++.++..+..+...+..+..++..+..+.......+..+..++..|+.++..+.............++.+...
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~ 155 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA 155 (194)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 202 LDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 202 l~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
+.-.++.++..+..++.|...|=.
T Consensus 156 L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665543
No 119
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.41 E-value=1.7 Score=32.94 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
++++..+|..|..+...|...-..+..+......+...+..++.
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444444555555555555544443
No 120
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.35 E-value=8.9 Score=37.80 Aligned_cols=12 Identities=0% Similarity=0.136 Sum_probs=10.4
Q ss_pred HHHHHHHHcCCC
Q 014013 87 MVKEVVTTVNCP 98 (432)
Q Consensus 87 ~~~~~~~~~gv~ 98 (432)
+++.||.++||.
T Consensus 11 sL~dFL~~t~I~ 22 (312)
T smart00787 11 SLQDFLNMTGIR 22 (312)
T ss_pred cHHHHHHHcCce
Confidence 578999999997
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=15 Score=39.92 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=8.4
Q ss_pred CCCcccccCCCCCcch
Q 014013 100 NFTLKDLIRPDATRTE 115 (432)
Q Consensus 100 DFt~~Dl~~P~~~R~~ 115 (432)
--.--.+..|...+.+
T Consensus 269 ~tlP~E~Vpp~~r~~r 284 (1118)
T KOG1029|consen 269 KTLPPELVPPSFRSSR 284 (1118)
T ss_pred CCCChhhcCccccccc
Confidence 3334456666655555
No 122
>PRK10869 recombination and repair protein; Provisional
Probab=93.12 E-value=14 Score=39.48 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=12.2
Q ss_pred HHHHHHHcCCCCCCCcccccCCCCCcch
Q 014013 88 VKEVVTTVNCPMNFTLKDLIRPDATRTE 115 (432)
Q Consensus 88 ~~~~~~~~gv~~DFt~~Dl~~P~~~R~~ 115 (432)
...++...|-+ + -.-|++|...|-.
T Consensus 121 ~~~li~ihgQ~-~--~~~ll~~~~~~~l 145 (553)
T PRK10869 121 GQLLIQIHGQH-A--HQLLLKPEHQKTL 145 (553)
T ss_pred HHhhhheeCcC-h--HHHhcCHHHHHHH
Confidence 34444555655 3 2344566655443
No 123
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.04 E-value=16 Score=39.95 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHH
Q 014013 36 PDFVSDLYTRLL 47 (432)
Q Consensus 36 ~~~v~~ly~~~l 47 (432)
-..|+++...+|
T Consensus 542 e~viqgl~A~lL 553 (970)
T KOG0946|consen 542 EQVIQGLCAFLL 553 (970)
T ss_pred HHHHHHHHHHHH
Confidence 456677776666
No 124
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.87 E-value=16 Score=39.37 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=22.9
Q ss_pred HHHHHHhhcCc-CCCChhhcCCCChhHHHHHHHHHHHHh
Q 014013 13 EIVTILTETEI-AVITENDLKNPNPDFVSDLYTRLLIFL 50 (432)
Q Consensus 13 eIv~~L~~~~~-~~~t~~dl~kPt~~~v~~ly~~~l~~~ 50 (432)
.|+..+.++|+ ..+.-..+.=|+..-++.||.+++.-+
T Consensus 70 ~lA~~~k~lGy~~digyq~fLYp~e~~~R~ll~fLiekL 108 (594)
T PF05667_consen 70 SLAQACKELGYRGDIGYQTFLYPNEKDLRRLLMFLIEKL 108 (594)
T ss_pred HHHHHHHHcCCCCCCcchhhccCChHHHHHHHHHHHHHC
Confidence 34555566666 245555666666666777766666544
No 125
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=92.72 E-value=16 Score=39.11 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 201 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e 201 (432)
..+..+...++.+|.++.........+++.++.+..+
T Consensus 164 ~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 164 RELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444333
No 126
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.59 E-value=23 Score=40.58 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014013 316 SLEAKLIERQGKVEQLDELQQQL 338 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~ 338 (432)
.+..++..|+..++++.......
T Consensus 671 ~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 671 KLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444433
No 127
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.52 E-value=7.9 Score=35.03 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
..+..++.+|+.-+..+...-..+.+....+..+.+.|..++..+...-..+..+.+.|+.+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 33455566666666666666666666666666666666666666655555555555555444
No 128
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.47 E-value=8.1 Score=35.01 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKK 242 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~ 242 (432)
.+.++.....+...-..+...+.+.+.--.+...+.++....++=+..+.++...+.......+...-++++
T Consensus 48 ~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~ 119 (205)
T KOG1003|consen 48 MKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLR 119 (205)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555555555555556666666666666666665555555555554444443
No 129
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.43 E-value=18 Score=39.05 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEK 340 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~ 340 (432)
+.|..++..++.++..++++++.+..
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K~q 223 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELKSQ 223 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 46677777777777777777666644
No 130
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.42 E-value=0.037 Score=60.97 Aligned_cols=12 Identities=25% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 014013 314 DKSLEAKLIERQ 325 (432)
Q Consensus 314 ~~~l~~ql~~~~ 325 (432)
...|+..+..|.
T Consensus 314 ~~~Le~el~sW~ 325 (722)
T PF05557_consen 314 NEKLEDELNSWE 325 (722)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 131
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.37 E-value=17 Score=38.55 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=20.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHH
Q 014013 198 KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 237 (432)
Q Consensus 198 e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~ 237 (432)
....+...+++.-..+..+..++...-+.+--+|.+|...
T Consensus 263 ~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v 302 (557)
T COG0497 263 KLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEV 302 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3344444444555555555555555555555555555533
No 132
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.28 E-value=4.7 Score=38.29 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
..+..|-..+.+|..++..-+-.++.+++.+..-+.+.+........|..+|..|-.....+.+....+..++.-.....
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 44555555566777777666666666666666666666666666666777777777777777777777777777777777
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
.-+...+......+..+.+++.++++.+.
T Consensus 98 ~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777666654
No 133
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=92.26 E-value=8.6 Score=34.84 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 014013 177 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 236 (432)
Q Consensus 177 ~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~ 236 (432)
.+..+++....+..+.+....+...+..+|.+++..-.+....+.-|..+..+..+++..
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~ 64 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEA 64 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 444555555556666666666666666666666555554444444445454555444443
No 134
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.25 E-value=5.4 Score=32.50 Aligned_cols=72 Identities=17% Similarity=0.350 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 130 ~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+|...++++...+..|+..++..+..+ .++..+.+.|++.+..|..+..+....+.++..+..++...++.
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~-------~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQ-------GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556665555555554332 23344445555555555555555555555555555444444443
No 135
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=21 Score=38.97 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013 372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~ 407 (432)
++++....+|+....++.++++.+...+-+.+..|.
T Consensus 556 kE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 556 KETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555777766666655555444
No 136
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=92.03 E-value=15 Score=37.28 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCH------------HHHHHHHHHHHHHH
Q 014013 210 EFDLVQSVQQNADLRSKIVQSP------------EKLQRTLEEKKSIR 245 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~iv~SP------------e~Lk~~i~el~~~l 245 (432)
-..+..+...+..|++-|=.+| .-|...+..|...+
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~l 255 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQL 255 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHH
Confidence 3456666666677766664433 35666777776554
No 137
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=91.93 E-value=4.1 Score=39.74 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014013 149 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 215 (432)
Q Consensus 149 ~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~ 215 (432)
+|..+...+......++++..++.+|...|...+..|..|..++.+++.+..+...-+.+...++..
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~ 301 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKT 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444445566777778888888888888888888877777776666655555554444433
No 138
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.86 E-value=2.6 Score=32.24 Aligned_cols=47 Identities=23% Similarity=0.365 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
.|+++...|..|..+...+......+..+...++.+...+..+|..+
T Consensus 26 EieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777777766667777777777777777776666544
No 139
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.81 E-value=3.2 Score=37.91 Aligned_cols=101 Identities=16% Similarity=0.327 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 396 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e 396 (432)
+..++.....+++.++..+.. ....+..++.....|+..+..+..++..++.-++.+.+++..+..+...+ +
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~----~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~----e 164 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSE----KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML----E 164 (194)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred ccccccccccccchhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 444455555555555444433 33445556666666667777777777777777777777777777777766 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013 397 AKLQELASKAEEIVEKFQQYTNSIGTLLP 425 (432)
Q Consensus 397 ~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~ 425 (432)
..+..+..+...|+.-.=.|+..=+..|+
T Consensus 165 ~k~~~l~~En~~Lv~Rwm~~k~~eAe~mN 193 (194)
T PF08614_consen 165 EKLRKLEEENRELVERWMQRKAQEAERMN 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77778888888887776666655444443
No 140
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.73 E-value=27 Score=39.49 Aligned_cols=58 Identities=10% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNAD 222 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~ 222 (432)
.....++..+.+++..+......-..++...+.+...+...+......+...+..+..
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~e 287 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAE 287 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444444444444444444444443333
No 141
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.62 E-value=36 Score=40.62 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS 386 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~ 386 (432)
...+..+...+.++..+..++...........+++.+++.+++.++.....++.............+...+.
T Consensus 892 ~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~ 963 (1353)
T TIGR02680 892 REAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEE 963 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555544443355555555555555555444444444444444444443333
No 142
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=91.48 E-value=22 Score=38.04 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=38.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 214 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~ 214 (432)
....+..+..+...+...|.+|...-...+..+..++..-..+...+....+...
T Consensus 106 ~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G 160 (560)
T PF06160_consen 106 IEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYG 160 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4556677777777777777777777777777777777777777777665544433
No 143
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.48 E-value=11 Score=34.39 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 76 VRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 155 (432)
Q Consensus 76 ~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~ 155 (432)
+++...+.-+..+-.-|..-|++ +. ...+.| +++..+...+....+....+..++.+...
T Consensus 65 dd~~~~f~~~~~tl~~LE~~GFn---------------V~----~l~~RL-~kLL~lk~~~~~~~e~~k~le~~~~~~~~ 124 (190)
T PF05266_consen 65 DDSRSSFESLMKTLSELEEHGFN---------------VK----FLRSRL-NKLLSLKDDQEKLLEERKKLEKKIEEKEA 124 (190)
T ss_pred CCcHHHHHHHHHHHHHHHHcCCc---------------cH----HHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666667777776 22 233333 33777777777666666666666555522
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 156 VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 156 k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
.-.+++....+|+.+|.++++....+....+....+...+....+.++..+..++.+-.
T Consensus 125 -------~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 125 -------ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred -------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777777777777777777777777777777777777777666665543
No 144
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.31 E-value=26 Score=38.45 Aligned_cols=42 Identities=19% Similarity=0.377 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
+.++.+...|+.+|++++-.-..+-.+|.++.+++-.|...+
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444433
No 145
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.02 E-value=4.5 Score=37.37 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 394 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~ 394 (432)
..++.++..++.++..+..+.+....+.+.+.+.....+.+|+++...+..+++ ....+++.++.+.+.++..
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~-------~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLI-------VAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444444444444444445555555444444 3444444444444455443
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.99 E-value=5.2 Score=39.51 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013 139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 218 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~ 218 (432)
+..++..++.+...+.......+...+++.++...++.+...++......-..++.+.-+..+.......+...+.-+..
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455556666666666666666666666667777777777777777777777777777
Q ss_pred HHHHHHhhh
Q 014013 219 QNADLRSKI 227 (432)
Q Consensus 219 e~~~L~~~i 227 (432)
..++|+..-
T Consensus 128 ~L~~L~ktN 136 (314)
T PF04111_consen 128 QLDRLRKTN 136 (314)
T ss_dssp HHHCHHT--
T ss_pred HHHHHHhcC
Confidence 777777643
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.99 E-value=5.8 Score=36.66 Aligned_cols=21 Identities=10% Similarity=0.336 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014013 319 AKLIERQGKVEQLDELQQQLE 339 (432)
Q Consensus 319 ~ql~~~~~k~~~l~~~~~~~~ 339 (432)
.++..++.+++.++.++....
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 148
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.92 E-value=19 Score=36.10 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
+.+....+.+..+.++..+++.......+...+.+.-..+..++..+......+..+..
T Consensus 110 El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 110 ELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555556666555555555555555555555555555554444444443
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=90.79 E-value=34 Score=38.86 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMES 362 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~ 362 (432)
..+|.++..+..+++.-..++...-+-...-+++.+..+..|++|-..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 445555555555555555555555555556666666666666665543
No 150
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.77 E-value=9 Score=32.18 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013 193 NKLKEKTGALDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 193 ~~~k~e~~el~~~l~~~~~~l~~l~~e~ 220 (432)
.++..+.+.+..-+.+....+.+++..+
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 151
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.72 E-value=3.3 Score=45.81 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013 373 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407 (432)
Q Consensus 373 ~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~ 407 (432)
++.....++...+.++.-+++-|...+......+.
T Consensus 607 e~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~ 641 (722)
T PF05557_consen 607 EIAELKAELASAEKRNQRLKEVFKAKSQEFREAVY 641 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544444433
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.13 E-value=10 Score=36.11 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 014013 374 VEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~ 391 (432)
++...+.++..+.+++++
T Consensus 72 ~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 72 NEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 153
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.11 E-value=31 Score=37.38 Aligned_cols=115 Identities=17% Similarity=0.186 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 130 ~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
+.+...+..+...|...++++.++-..+.............-.-|+..+..+......++..+++-+.+..++..+++.+
T Consensus 57 e~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l 136 (660)
T KOG4302|consen 57 EEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKL 136 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566677777777777665543321111111111225666666667777777777777777766666666666
Q ss_pred HHHHHHHHHHHHHHHhhhhcCHHHHH-HHHHHHHHHHHHH
Q 014013 210 EFDLVQSVQQNADLRSKIVQSPEKLQ-RTLEEKKSIREEA 248 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~iv~SPe~Lk-~~i~el~~~l~~l 248 (432)
...+..- ..+-..+..++..|- ..+++++..|.++
T Consensus 137 ~~~l~g~----~~~~~~~~~D~~dlsl~kLeelr~~L~~L 172 (660)
T KOG4302|consen 137 CEELGGP----EDLPSFLIADESDLSLEKLEELREHLNEL 172 (660)
T ss_pred HHHhcCC----ccCCcccccCcccccHHHHHHHHHHHHHH
Confidence 5555543 233344445555544 5666666666443
No 154
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=90.11 E-value=2 Score=37.20 Aligned_cols=43 Identities=16% Similarity=0.436 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
......+.+..++..+.+........+.+++.+..+|..++-.
T Consensus 48 ~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~ 90 (141)
T PF13874_consen 48 QHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLR 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555444445555555555555555444443
No 155
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.97 E-value=5.7 Score=30.16 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 155 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 155 ~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
.+.......|..|..++.+|+.+-..+......|..+...++.+.+.+..+|..+
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666666666666666666666666666666655555443
No 156
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.67 E-value=37 Score=37.63 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 194 KLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 194 ~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
.++.....+...+.+......+...+.+
T Consensus 362 q~~~ql~~le~~~~e~q~~~qe~~~e~e 389 (980)
T KOG0980|consen 362 QYENQLLALEGELQEQQREAQENREEQE 389 (980)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444444444544444444444444
No 157
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.60 E-value=41 Score=37.95 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK-----HQVSLRTTLNK 194 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~-----~q~~l~~~~~~ 194 (432)
.++.+... +..+++....++.....-...+..++.......+.|+-+.. .......|.-+.. .......+++.
T Consensus 175 ~ll~~h~e-L~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~re-r~~~~~~Ie~l~~k~~~v~y~~~~~ey~~ 252 (1072)
T KOG0979|consen 175 ELLQYHIE-LMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRE-RERKKSKIELLEKKKKWVEYKKHDREYNA 252 (1072)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccchHhhhHHHHH
Confidence 67777777 88888888888776666666666665555555554444322 2222333332211 12233455555
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013 195 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 234 (432)
Q Consensus 195 ~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L 234 (432)
++..+..++..+..+...+..+...+..|++.+...-.++
T Consensus 253 ~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~ 292 (1072)
T KOG0979|consen 253 YKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKI 292 (1072)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHH
Confidence 5555555555555555555444444444444333333333
No 158
>PRK10869 recombination and repair protein; Provisional
Probab=89.50 E-value=33 Score=36.73 Aligned_cols=21 Identities=14% Similarity=-0.156 Sum_probs=9.8
Q ss_pred CCCChhHHHHHHHHHHHHhcc
Q 014013 32 KNPNPDFVSDLYTRLLIFLDV 52 (432)
Q Consensus 32 ~kPt~~~v~~ly~~~l~~~~~ 52 (432)
+=||..==..|...+-..+|.
T Consensus 28 tGetGaGKS~ildAi~~llG~ 48 (553)
T PRK10869 28 TGETGAGKSIAIDALGLCLGG 48 (553)
T ss_pred ECCCCCChHHHHHHHHHHhCC
Confidence 445533334444444455564
No 159
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.12 E-value=14 Score=32.06 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013 376 AVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 376 ~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~ 414 (432)
....++..+...+...+..|+.|++.-+.+|.+|..++.
T Consensus 112 ~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334456666677778999999999999999999988753
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.11 E-value=29 Score=35.54 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 014013 314 DKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEM 360 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~ 360 (432)
.+.+++++.+++.++.++.++....++.+....++...-...+++.-
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35566666677777777766666655555544444444444343333
No 161
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.77 E-value=12 Score=30.60 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 168 ~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
.+...++...|..|....+........+..++..|...+..+...-....+.+..|++.|..
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~e 69 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDE 69 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555444444445555555555555555555555555555555555543
No 162
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=88.76 E-value=44 Score=37.16 Aligned_cols=48 Identities=17% Similarity=0.247 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 181 LNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 181 l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
+......+..+...+........++++.....+.++++.+..|++++.
T Consensus 594 l~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~ 641 (769)
T PF05911_consen 594 LEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELE 641 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444555555555555555555555554
No 163
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.75 E-value=31 Score=35.45 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014013 374 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 413 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i 413 (432)
-+....+.-.+..+-+..+.....|-+++...|.+|+++|
T Consensus 487 Ke~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 487 KETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 3334445555666666777777778888888888888876
No 164
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=88.63 E-value=0.42 Score=41.56 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHHHHhc
Q 014013 14 IVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFLD 51 (432)
Q Consensus 14 Iv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l~~~~ 51 (432)
+...+..||+++||-.||.+|+|.-+..+...++.|+-
T Consensus 90 ~~~~~~~~gv~DF~l~Dl~~P~~~R~~~~LSalINF~~ 127 (146)
T PF03800_consen 90 LQKFLKDCGVPDFSLSDLLKPDPKRTRRILSALINFAR 127 (146)
T ss_dssp HHHHHHHTT-----HHHHHS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999999997763
No 165
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.58 E-value=8.3 Score=28.70 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
|+++..+|..|.++...+.....++..+-+.+|.+...+..+|..
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555555554443
No 166
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=33 Score=35.56 Aligned_cols=44 Identities=11% Similarity=0.334 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+-.-+++.+.+++.+|++.+......+.++|.+..+|..+|-.
T Consensus 351 ~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLR 394 (508)
T KOG3091|consen 351 KQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILR 394 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555555555555444443
No 167
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=88.36 E-value=20 Score=32.90 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
.+.|..|..+|.+++.+.......+.++..+|..|...|..+......|...+..+...+..+
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L 88 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888999999999999988888888888777777666543
No 168
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.31 E-value=13 Score=35.44 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
.+...|..++..++++...+....+.+.........++.+++..+.++..-...|.+
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333
No 169
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.24 E-value=14 Score=31.33 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014013 351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK 392 (432)
Q Consensus 351 ~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k 392 (432)
+.....++++..++.+.+..+.+++.+..-+..|+.+|..+.
T Consensus 82 ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 82 EISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444566666666666666666777777777777766653
No 170
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.04 E-value=48 Score=36.83 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=12.6
Q ss_pred CCCCCcchhHhhhhHHHHHHHHHHH
Q 014013 108 RPDATRTEDTKMNLLRPIAEDLTRL 132 (432)
Q Consensus 108 ~P~~~R~~~~~~~~ls~iin~~~~f 132 (432)
.|+|.+.. .+...+++.|...
T Consensus 163 ~~dP~~Aa----~iaN~la~~Y~~~ 183 (754)
T TIGR01005 163 SEDPKLAA----AIPDAIAAAYIAG 183 (754)
T ss_pred cCCHHHHH----HHHHHHHHHHHHH
Confidence 46666655 6666666655543
No 171
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.42 E-value=7.8 Score=29.16 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
+++.+..|...|..+.+...........+..+.......|..+-..+..++.+++.|+..
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777777777777777777777777777777777777776655
No 172
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.24 E-value=42 Score=35.28 Aligned_cols=56 Identities=25% Similarity=0.260 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
+.-..+-.+|.+|.....+++.++...+.++..+...-.++...-..+..+.-+|+
T Consensus 100 akE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr 155 (772)
T KOG0999|consen 100 AKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLR 155 (772)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 33333444444444444555555555555555554444444333333333333343
No 173
>PF15294 Leu_zip: Leucine zipper
Probab=87.16 E-value=24 Score=34.06 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK 198 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e 198 (432)
..+..+|+.|+.+|..+.........+..++...
T Consensus 135 ~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~ 168 (278)
T PF15294_consen 135 DRLQEENEKLKERLKSLEKQATSALDEKSKLEAQ 168 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555554444444444443333333
No 174
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=87.07 E-value=33 Score=33.85 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRT 190 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~ 190 (432)
|..+-..--+++|...|.+=+....++..
T Consensus 63 P~LElY~~sC~EL~~~I~egr~~~~~~E~ 91 (312)
T smart00787 63 PLLELYQFSCKELKKYISEGRDLFKEIEE 91 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445566666666655554444433
No 175
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.99 E-value=25 Score=32.97 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQ--------QLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITS 386 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~--------~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~ 386 (432)
+.+++++...+.....|+.+.. .+.++.-.+...+......++..+.....-.+..+..+..+..+|..++.
T Consensus 55 k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 55 KQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666533 23334444455555555555555555555555555555555555555555
Q ss_pred hHHHHHH
Q 014013 387 KTKFVKE 393 (432)
Q Consensus 387 ~~~~~k~ 393 (432)
++..++.
T Consensus 135 ~~~~l~a 141 (225)
T COG1842 135 KKEALKA 141 (225)
T ss_pred HHHHHHH
Confidence 5554443
No 176
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.64 E-value=25 Score=32.12 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 219 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e 219 (432)
+.++...++++..+..-|+..|......+..+....++|-.-|.....++-.++..
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~ 76 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRER 76 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555555544444444433333333333
No 177
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.26 E-value=12 Score=34.54 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013 347 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 347 ~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~ 414 (432)
....+....|+.+.+....+.+..+.+++...++.+ .. ..|.+.+..+|++|.++|.
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e-------~~----~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE-------GL----QDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hc----ccHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555555555554444444 55 5666777777888887764
No 178
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=86.24 E-value=13 Score=28.56 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 173 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 173 eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
.|++++...-....=|.-+++++|.++..+......+...-..+.++...|+.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555544444444444444443
No 179
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.08 E-value=18 Score=32.11 Aligned_cols=34 Identities=6% Similarity=0.097 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHH--cCCCCCCCcccccCCCCC
Q 014013 78 SVQIMKLYSMVKEVVTT--VNCPMNFTLKDLIRPDAT 112 (432)
Q Consensus 78 s~~~l~~~~~~~~~~~~--~gv~~DFt~~Dl~~P~~~ 112 (432)
.++--.+-+.|-.+... |-+. +|+=.=+|.|...
T Consensus 29 ~~~K~~v~k~Ld~L~~~g~i~~K-~~GKqkiY~~~Q~ 64 (169)
T PF07106_consen 29 KVGKTAVQKALDSLVEEGKIVEK-EYGKQKIYFANQD 64 (169)
T ss_pred hccHHHHHHHHHHHHhCCCeeee-eecceEEEeeCcc
Confidence 44445555555555555 3333 6666666666553
No 180
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=85.86 E-value=27 Score=35.15 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=13.4
Q ss_pred CCCChhHH--HHHHHHHHHHhcc
Q 014013 32 KNPNPDFV--SDLYTRLLIFLDV 52 (432)
Q Consensus 32 ~kPt~~~v--~~ly~~~l~~~~~ 52 (432)
.||..+|. ..|..|++..+|.
T Consensus 36 ~Np~eQF~~F~~L~~WL~~~~g~ 58 (359)
T PF10498_consen 36 TNPGEQFYYFTSLCAWLISKAGR 58 (359)
T ss_pred CCchHHHHHHHHHHHHHHHhcCC
Confidence 36776664 4566677777774
No 181
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.84 E-value=34 Score=32.81 Aligned_cols=54 Identities=11% Similarity=0.313 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.+.++..+.....+...++.+++.+..++..+|.+++..-..+...+..++++|
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV 258 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKV 258 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444455555555555555555555554444444444443
No 182
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=85.75 E-value=29 Score=32.03 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 230 SPEKLQRTLEEKKSIREEARDAEKL 254 (432)
Q Consensus 230 SPe~Lk~~i~el~~~l~~l~~~e~~ 254 (432)
++..+.+.+.+.....+++...|++
T Consensus 67 ~~~~i~~~~~erdq~~~dL~s~E~s 91 (207)
T PF05010_consen 67 SEAEIQKLLKERDQAYADLNSLEKS 91 (207)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444554544444444444443
No 183
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=85.72 E-value=28 Score=31.77 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014013 398 KLQELASKAEEIVEKFQQYTNSIGTLLPV 426 (432)
Q Consensus 398 ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~ 426 (432)
-|..+..+|..|.+.|..-+..|...|.+
T Consensus 164 AI~sL~~e~~~~~~di~~Li~~m~~sI~e 192 (201)
T PF11172_consen 164 AIASLQGEFSSIESDISQLIKEMERSIAE 192 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666665544
No 184
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.56 E-value=62 Score=35.61 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 014013 140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 219 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e 219 (432)
..+|..++.++...+..........+.+...+.++......+......|+.++.++|.+-..+.....+++.+-..+...
T Consensus 33 ~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 33 QQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555555555555555555556666777777777777777777888888888888888888888888888777777777
Q ss_pred HHHHHhh
Q 014013 220 NADLRSK 226 (432)
Q Consensus 220 ~~~L~~~ 226 (432)
+..|+.-
T Consensus 113 vs~Lk~s 119 (717)
T PF09730_consen 113 VSVLKQS 119 (717)
T ss_pred HHHHHHh
Confidence 7777654
No 185
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.94 E-value=70 Score=35.64 Aligned_cols=39 Identities=10% Similarity=0.222 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
...+.+....+..++-++.+-.+.-.+-+.+-+.++.+.
T Consensus 357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~el 395 (980)
T KOG0980|consen 357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNEL 395 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655554444444444444333
No 186
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.77 E-value=50 Score=33.86 Aligned_cols=17 Identities=6% Similarity=0.202 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhccc
Q 014013 408 EIVEKFQQYTNSIGTLL 424 (432)
Q Consensus 408 ~L~~~i~~Y~~~m~~~~ 424 (432)
++-..|+.|-+++...|
T Consensus 452 kllt~iH~nc~ei~E~i 468 (521)
T KOG1937|consen 452 KLLTRIHLNCMEILEMI 468 (521)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566655555443
No 187
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=84.58 E-value=15 Score=27.97 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 170 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 170 e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
.+..|-.+-..|......+...+..++....++...+..+...+..+..+++.|+..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555555555555555555555443
No 188
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.54 E-value=12 Score=38.66 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQE-VDAKVKELRQTIQDLNKHQVSLRTTL 192 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~e-l~~e~~eLe~~L~~l~~~q~~l~~~~ 192 (432)
+.+..++.+.-.++.+...+...+..|..+.+.++.+......+|++ +.++..++..+...|+..+.++...+
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l 132 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLI 132 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777788887888888888888888777665555555533 33334444444444444433333333
No 189
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.49 E-value=15 Score=27.45 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 235 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk 235 (432)
|+.++...-....=+.-+++++|++++.+.....++......+..+.+.|+..-..=.++|+
T Consensus 9 LE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 9 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555555555555555555555555555443333333333
No 190
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.44 E-value=11 Score=34.75 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
+++.+++.+|-.++.++....+++...++.+..++..|...+..+--.+..++...+.|.
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 334444444444444444444444444444444444333333333333333333333333
No 191
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.43 E-value=39 Score=32.31 Aligned_cols=68 Identities=24% Similarity=0.321 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el 241 (432)
.+..+..+......+..+.+.+..+..........+......+.+....|...|...-..+...++++
T Consensus 43 ~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~ 110 (264)
T PF06008_consen 43 QKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQV 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666666666666666666666666666655555555444444
No 192
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.95 E-value=60 Score=34.12 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 148 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 148 ~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.+|+.++..+......|..+.++..+-++.+..++..-.+|.+...+ +..+|.+++-.+..-+.+|.++.+++
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk-------~ds~Lk~leIalEqkkEec~kme~qL 403 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK-------RDSKLKSLEIALEQKKEECSKMEAQL 403 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555666666666666666666655555554433 34456677777777788888888877
Q ss_pred hcCHHHH
Q 014013 228 VQSPEKL 234 (432)
Q Consensus 228 v~SPe~L 234 (432)
+.--..+
T Consensus 404 kkAh~~~ 410 (654)
T KOG4809|consen 404 KKAHNIE 410 (654)
T ss_pred HHHHHhh
Confidence 6554433
No 193
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.63 E-value=15 Score=36.21 Aligned_cols=64 Identities=14% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 232 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe 232 (432)
++..+|+.+-.++.+....+..+...++.+-...-...+.....+.+..++...+..++...-+
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444445555555555666666666655544433
No 194
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.50 E-value=14 Score=27.46 Aligned_cols=48 Identities=13% Similarity=0.229 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
-..++++..+|..|.+++..+......+....+....+...|..+|-.
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344566667777777777766666666666666666666666555543
No 195
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=83.36 E-value=49 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 155 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~ 155 (432)
-+.-+..+++.++.+|....-..++|+.....++.
T Consensus 10 AL~IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKk 44 (319)
T PF09789_consen 10 ALLILSQELEKCQSERDQYKLMAEQLQERYQALKK 44 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666655555555544444433
No 196
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.16 E-value=43 Score=31.82 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 317 LEAKLIERQGKVEQL 331 (432)
Q Consensus 317 l~~ql~~~~~k~~~l 331 (432)
|+.||..+...+..+
T Consensus 187 lq~QL~~L~~EL~~~ 201 (246)
T PF00769_consen 187 LQEQLKELKSELEQL 201 (246)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 197
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=82.93 E-value=40 Score=31.32 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHH
Q 014013 293 AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDEL-QQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQ 371 (432)
Q Consensus 293 ~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~-~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~ 371 (432)
.++++..+...+..+...-...+.+++++...+..+..|..+ ..++..-...-..++=.+..........+....+...
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~ 112 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVE 112 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHh
Q 014013 372 KKVEAVVTEVDAITSKTKFVKES 394 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~ 394 (432)
..++.+...+..++.++..++..
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 198
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=82.69 E-value=46 Score=31.84 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 014013 292 SAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSED 348 (432)
Q Consensus 292 ~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e 348 (432)
+..+++.++..++..-....-++..|++.|.....+.+.-......+.+++..-++.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~ 75 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMES 75 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 334444444444444333444456666666666666666666666655555544433
No 199
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.64 E-value=57 Score=32.83 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 196 KEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 196 k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
..++.....++..+...+....++..++..+
T Consensus 115 r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q 145 (499)
T COG4372 115 RQEREAVRQELAAARQNLAKAQQELARLTKQ 145 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444443
No 200
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.62 E-value=38 Score=30.79 Aligned_cols=29 Identities=34% Similarity=0.510 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
+..+..+...+..++..++..++.....+
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r 99 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGR 99 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444445555555555444333
No 201
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=82.61 E-value=29 Score=29.48 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
++.+.-..+..++.++.....++.......+.........+..-..-+..++.++..+...+..|..+=..-++.|.
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566777788888887777777777777777788777778888888889999988888888887666666553
No 202
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.59 E-value=52 Score=32.40 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHHHHH
Q 014013 379 TEVDAITSKTKFVKE 393 (432)
Q Consensus 379 ~~i~~ie~~~~~~k~ 393 (432)
+.+..+|.+....+.
T Consensus 251 Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 251 KKIKKLEKENQTWKS 265 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 203
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=82.46 E-value=24 Score=28.31 Aligned_cols=75 Identities=24% Similarity=0.411 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-------------------chhHHHHHHHHHHHHHHHHHHH
Q 014013 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER---E-------------------LPLVQEVDAKVKELRQTIQDLN 182 (432)
Q Consensus 125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~---~-------------------~~~i~el~~e~~eLe~~L~~l~ 182 (432)
++++|..++.+...+...+..+..++.++.....+ . ...+..+..+.+.++.++..+.
T Consensus 3 ~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~ 82 (106)
T PF01920_consen 3 LQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLE 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777767777776666666554332 1 1123556666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014013 183 KHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 183 ~~q~~l~~~~~~~k~e~ 199 (432)
+....+...+.+++...
T Consensus 83 ~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 83 KQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666655555443
No 204
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=82.44 E-value=74 Score=34.03 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQ 336 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~ 336 (432)
-+..+..+++..+.|++++.
T Consensus 247 aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 247 AQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666655544
No 205
>PF14992 TMCO5: TMCO5 family
Probab=82.36 E-value=49 Score=31.93 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=7.3
Q ss_pred HHhHHHHHHHHHHHHH
Q 014013 256 MQSFQEKTTTLEVYQK 271 (432)
Q Consensus 256 l~~~q~~~~~l~~~~k 271 (432)
++.++++...++++.+
T Consensus 24 L~ki~~~E~~iq~Le~ 39 (280)
T PF14992_consen 24 LQKIQEKEGAIQSLER 39 (280)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 206
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=81.94 E-value=43 Score=30.98 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDEL 334 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~ 334 (432)
..+++++......+..|..+
T Consensus 54 ~~le~~~~~~~~~~~~~~~~ 73 (221)
T PF04012_consen 54 KRLERKLDEAEEEAEKWEKQ 73 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 207
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.69 E-value=55 Score=32.05 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 277 SKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQL 338 (432)
Q Consensus 277 ~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~ 338 (432)
..|++++.....++..+.+ .+......+.....+|..|..+++.++.+...+--..+.+
T Consensus 202 ~dcv~QL~~An~qia~Lse---ELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 202 LDCVKQLSEANQQIASLSE---ELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHhhhcchhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3345555444444444333 2333333344444456777777777777766665444443
No 208
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.67 E-value=30 Score=29.03 Aligned_cols=49 Identities=12% Similarity=0.242 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Q 014013 345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQ 400 (432)
Q Consensus 345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~ 400 (432)
....++..+.+|...|.....=..++..++ .++...+.++|.=|-..|+
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~E~v-------eEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKSEEV-------EELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 445555666666666665555555444444 4444444477666654444
No 209
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=81.51 E-value=69 Score=33.04 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 150 IAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK---HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 150 i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~---~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
+..++.........|+.|+..|--|+.++.+|.- .|..+..-+++++....+|...-..+-.+...+..-..+|+.-
T Consensus 319 L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~ 398 (527)
T PF15066_consen 319 LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEA 398 (527)
T ss_pred HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHH
Confidence 3333333344566778888888888888887754 3445666777777777777776666666555555555555555
Q ss_pred hhcCHHHHHHHHHH
Q 014013 227 IVQSPEKLQRTLEE 240 (432)
Q Consensus 227 iv~SPe~Lk~~i~e 240 (432)
+...--.|+....+
T Consensus 399 la~tqk~LqEsr~e 412 (527)
T PF15066_consen 399 LANTQKHLQESRNE 412 (527)
T ss_pred HHHHHHHHHHHHhh
Confidence 54444444444433
No 210
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.32 E-value=26 Score=31.90 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q 014013 197 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 244 (432)
Q Consensus 197 ~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~ 244 (432)
.+...+..++.++...+..+..+.. .+...+|+.+.....+....
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~---~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE---KYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHH
Confidence 5556667777777777777776665 55567898887666555443
No 211
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=80.47 E-value=95 Score=33.99 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSEL 139 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l 139 (432)
.++.+..++..+..+...+
T Consensus 315 ~~e~l~~~~~~~~~~~~~~ 333 (698)
T KOG0978|consen 315 DLESLLDKIQDLISQEAEL 333 (698)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444455555444444
No 212
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.37 E-value=30 Score=28.11 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 126 AEDLTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 126 in~~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
+.++..+..++..+...++.++.+-..+.
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~s 56 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELS 56 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344455555555555444444433333
No 213
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=80.34 E-value=46 Score=30.24 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
.|..-|+.|..+-..|+.....+...-..+..+...+...+
T Consensus 12 dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~ 52 (193)
T PF14662_consen 12 DLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQL 52 (193)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333444433333333
No 214
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.24 E-value=1e+02 Score=34.18 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+..++++++..+......+...+++.....+.|..++..
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~ 618 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDR 618 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444443
No 215
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=35 Score=28.58 Aligned_cols=84 Identities=18% Similarity=0.334 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcchhHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE---------------RELPLVQEVDAKVKELRQTIQDLNKH 184 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~---------------~~~~~i~el~~e~~eLe~~L~~l~~~ 184 (432)
..|.-+.+++..+-.++..++..+......++++..--. .-...+.+|..+..-|+-++..|.++
T Consensus 13 ~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQ 92 (119)
T COG1382 13 AQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQ 92 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666677777666666666555532110 12224477778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014013 185 QVSLRTTLNKLKEKTGALD 203 (432)
Q Consensus 185 q~~l~~~~~~~k~e~~el~ 203 (432)
...+...+++++.....+.
T Consensus 93 e~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 93 EEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888877777765554
No 216
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.74 E-value=60 Score=31.21 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
...++.++..+......+...+...+.+..++...+...
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 217
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=79.48 E-value=73 Score=32.10 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHhhcCcC-CCChhhcCCCChhHHHHHHHHHH-HHh
Q 014013 7 PRLSATEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLL-IFL 50 (432)
Q Consensus 7 P~l~~~eIv~~L~~~~~~-~~t~~dl~kPt~~~v~~ly~~~l-~~~ 50 (432)
|.-...-|+..|..+|+| +|.+.-|..=..+.|-.|.-.+. ..+
T Consensus 69 Pn~~~~~Il~~lr~~g~~~df~p~kLk~G~Ge~vc~VLd~Lad~AL 114 (359)
T PF10498_consen 69 PNATISNILDELRKLGVPVDFPPSKLKQGSGEHVCYVLDQLADEAL 114 (359)
T ss_pred HHHHHHHHHHHHHccCCCCCCChHHhhCCCCHHHHHHHHHHHHHHH
Confidence 445566788888999985 88888888888888888877776 444
No 218
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=79.21 E-value=32 Score=27.87 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
++..|..++.....+...+..+...+.++....
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~ 36 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKAL 36 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777666666666666666655554433
No 219
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.47 E-value=27 Score=26.57 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 217 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~ 217 (432)
..|.+|..+-+.|...-..++.....|+............+..+++.....+..++
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444443
No 220
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=78.19 E-value=78 Score=31.71 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=21.2
Q ss_pred cCCCchhHHHHHHHHHHHHH--HHHHHHHcCC
Q 014013 68 QLENPDLHVRSVQIMKLYSM--VKEVVTTVNC 97 (432)
Q Consensus 68 ~~~~pe~~~~s~~~l~~~~~--~~~~~~~~gv 97 (432)
++.+|..|..-+.++.+|+. +..+-..+.|
T Consensus 82 GF~d~ltf~SVVelIn~yr~~SL~~yN~~LDv 113 (464)
T KOG4637|consen 82 GFSDPLTFNSVVELINHYRNESLAQYNPKLDV 113 (464)
T ss_pred CCCCchhhHHHHHHHHHHhhhHHHhhCcccce
Confidence 44578888888999999997 4444444444
No 221
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.69 E-value=43 Score=28.44 Aligned_cols=17 Identities=0% Similarity=0.106 Sum_probs=6.2
Q ss_pred HhhhhHHHHHHHHHHHH
Q 014013 205 KFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 205 ~l~~~~~~l~~l~~e~~ 221 (432)
.+.++...+..++.+.+
T Consensus 67 e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 67 ELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 222
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=77.64 E-value=37 Score=27.71 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH-HHHHHH
Q 014013 187 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR-EEARDA 251 (432)
Q Consensus 187 ~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l-~~l~~~ 251 (432)
.+...+..++.....+...+..+......+.......+..|...-+.|...+++.+..+ ..+...
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~ 69 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQ 69 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666777777777777888888888888888888888877655 444443
No 223
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=77.49 E-value=98 Score=32.47 Aligned_cols=20 Identities=5% Similarity=0.159 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 014013 395 GAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 395 ~e~ei~~~~~~~~~L~~~i~ 414 (432)
-+.+|.++..++..+.+.+.
T Consensus 453 R~~eV~~vRqELa~lLssvQ 472 (531)
T PF15450_consen 453 REREVGAVRQELATLLSSVQ 472 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555543
No 224
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=77.44 E-value=98 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.322 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 197 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 197 ~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
.+...+..++..+...+..+......|+.++.
T Consensus 204 ~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 204 SEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444555555555555555555555555544
No 225
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=76.43 E-value=70 Score=30.25 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=12.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 390 FVKESGAAKLQELASKAEEIVEKFQQY 416 (432)
Q Consensus 390 ~~k~~~e~ei~~~~~~~~~L~~~i~~Y 416 (432)
.+...++.|...-+..|+.|.+++..+
T Consensus 161 ~l~~~i~~Ek~~Re~~~~~l~~~le~~ 187 (247)
T PF06705_consen 161 RLQEKIEKEKNTRESKLSELRSELEEV 187 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555544443
No 226
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=76.00 E-value=64 Score=29.61 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 293 AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQ 336 (432)
Q Consensus 293 ~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~ 336 (432)
+..++..++.+...+.+..+....|..+...++.....|..+..
T Consensus 88 L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 88 LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555444444433
No 227
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.70 E-value=59 Score=29.01 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 230 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~S 230 (432)
..+++..+|..+..+|.+-+.....+...+...-.-.+-...++..+......+..++......+..-
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~ 110 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKL 110 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888877777776666666666666666666666665555555555444433
No 228
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=75.06 E-value=1.4e+02 Score=32.86 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 014013 397 AKLQELASKAEEIVEKFQQYTNSIGT 422 (432)
Q Consensus 397 ~ei~~~~~~~~~L~~~i~~Y~~~m~~ 422 (432)
+.+.++......|..+...+...|..
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555443
No 229
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.38 E-value=1.4e+02 Score=32.58 Aligned_cols=52 Identities=23% Similarity=0.185 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 014013 191 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 243 (432)
Q Consensus 191 ~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~ 243 (432)
+...+......-...+..+...+.....+.+.++..-+++| -|+..++.+.+
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~-~LqeE~e~Lqs 289 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLREELATLRENRETVG-LLQEELEGLQS 289 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH
Confidence 34444444444444555556666666666666666666555 34444444443
No 230
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.29 E-value=47 Score=27.21 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
.+..+++.|..++.+...+...+..+..++.++..-.
T Consensus 4 ~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~ 40 (110)
T TIGR02338 4 QVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKAL 40 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777666666666666665544
No 231
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.20 E-value=1.3e+02 Score=32.18 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 203 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~ 203 (432)
+......++.+..+|..+.........+.+-++-+..++.
T Consensus 159 ~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele 198 (557)
T COG0497 159 YQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELE 198 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666555555555555554443
No 232
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=73.49 E-value=1.4e+02 Score=32.47 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=30.1
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Q 014013 353 FENVKLEMESKRQDLEARQKKVE-AVVTEVDAITSKTKFVKESGAAKLQELASKAEEI 409 (432)
Q Consensus 353 ~~~l~~e~~~~~~e~~~~~~~ie-~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L 409 (432)
+.....+-..++++....+...+ ....++..+++...+--...|+.++.+..+..+-
T Consensus 551 lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKa 608 (739)
T PF07111_consen 551 LQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKA 608 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455554444444 3445666666666666666666666665555543
No 233
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=73.37 E-value=54 Score=27.49 Aligned_cols=32 Identities=19% Similarity=0.464 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 156 (432)
Q Consensus 125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k 156 (432)
-+|+|+++..+...+.+.|...+.+++.+...
T Consensus 21 ~iN~Fsrl~~R~~~lk~dik~~k~~~enledA 52 (131)
T KOG1760|consen 21 NINEFSRLNSRKDDLKADIKEAKTEIENLEDA 52 (131)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777677766666666666665543
No 234
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=73.05 E-value=1.5e+02 Score=32.63 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC---HHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS---PEKLQRTLE 239 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~S---Pe~Lk~~i~ 239 (432)
.++-|+.+|..|+.+|+-|+.+..+ .++.+-...-.+..+++..+..-.--|+.++..| -+-|+...+
T Consensus 388 A~QplrsENaqLrRrLrilnqqlre---------qe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kne 458 (861)
T PF15254_consen 388 AMQPLRSENAQLRRRLRILNQQLRE---------QEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNE 458 (861)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHH---------HHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 3588899999999999988876654 1222222233456777888777777777777544 355555556
Q ss_pred HHHHHHHHH
Q 014013 240 EKKSIREEA 248 (432)
Q Consensus 240 el~~~l~~l 248 (432)
+|-..++..
T Consensus 459 ellk~~e~q 467 (861)
T PF15254_consen 459 ELLKVIENQ 467 (861)
T ss_pred HHHHHHHHH
Confidence 665555333
No 235
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.03 E-value=1.6e+02 Score=32.72 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=16.5
Q ss_pred cCCCCCcchhHhhhhHHHHHHHHHHHH
Q 014013 107 IRPDATRTEDTKMNLLRPIAEDLTRLD 133 (432)
Q Consensus 107 ~~P~~~R~~~~~~~~ls~iin~~~~f~ 133 (432)
..|+|.+.. .++.++++.|....
T Consensus 235 ~~~dP~~Aa----~ilN~la~~Yi~~~ 257 (726)
T PRK09841 235 TGDDPQLIT----RILNSIANNYLQQN 257 (726)
T ss_pred eCCCHHHHH----HHHHHHHHHHHHHH
Confidence 468888888 78888777676543
No 236
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=72.89 E-value=25 Score=29.66 Aligned_cols=39 Identities=31% Similarity=0.483 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 203 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~ 203 (432)
.+|++++..|.+++..|......+.-+++.|+..-..+.
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888888888777777665553
No 237
>PHA03011 hypothetical protein; Provisional
Probab=72.75 E-value=31 Score=27.68 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
++..++...+.+|..+...+-.++.-+..+...+..-+.+-...+..++.++++|+..+.
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 445556666667777777777777777777777777777888888888888888887764
No 238
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.51 E-value=1.2e+02 Score=31.19 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAF 353 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~ 353 (432)
|..-..-|..++..++++.+........++.+++.++
T Consensus 408 l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 408 LIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666666655555554444444443
No 239
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=72.38 E-value=77 Score=28.81 Aligned_cols=11 Identities=27% Similarity=0.081 Sum_probs=4.6
Q ss_pred hhHHHHHHHHH
Q 014013 36 PDFVSDLYTRL 46 (432)
Q Consensus 36 ~~~v~~ly~~~ 46 (432)
..-|..+-+++
T Consensus 32 R~dVi~L~e~L 42 (189)
T PF10211_consen 32 RQDVIQLQEWL 42 (189)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 240
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=71.91 E-value=22 Score=31.54 Aligned_cols=79 Identities=29% Similarity=0.385 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT--GALDEKFSQTEFDLVQSVQQNADLRSKI-VQSPEKLQRTLE 239 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~--~el~~~l~~~~~~l~~l~~e~~~L~~~i-v~SPe~Lk~~i~ 239 (432)
.+..+..++..|+.++..++.....+..++..+.... .++...+.++..++..+......|++-. .-||+.+.....
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~ 152 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEK 152 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 3455555566666666666666666666555555443 4455555555555555555555555422 235655554443
Q ss_pred HH
Q 014013 240 EK 241 (432)
Q Consensus 240 el 241 (432)
+.
T Consensus 153 ~~ 154 (169)
T PF07106_consen 153 EY 154 (169)
T ss_pred HH
Confidence 33
No 241
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=71.75 E-value=1.7e+02 Score=32.88 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKH-QVSLRTTLNKLKEKTGALDEKFSQTEFDLV 214 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~-q~~l~~~~~~~k~e~~el~~~l~~~~~~l~ 214 (432)
+.++..+..+++.++.+.... ...+...+............-+..+.+.+.
T Consensus 229 ~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a 280 (782)
T PRK00409 229 VVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFA 280 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555443 446666666666666666666666655444
No 242
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=71.61 E-value=2.1e+02 Score=33.62 Aligned_cols=57 Identities=14% Similarity=0.290 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQ 219 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e 219 (432)
.+.+.-+....++..+.++......+...+..+.+...-+...++.+.....++..+
T Consensus 872 ~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~ 928 (1294)
T KOG0962|consen 872 KIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNE 928 (1294)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHH
Confidence 334444555666666666666666666666666666555555555554444444444
No 243
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.52 E-value=94 Score=29.46 Aligned_cols=21 Identities=43% Similarity=0.365 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 014013 207 SQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 207 ~~~~~~l~~l~~e~~~L~~~i 227 (432)
+.+.-.+..+..-++.|+.||
T Consensus 94 s~Leddlsqt~aikeql~kyi 114 (333)
T KOG1853|consen 94 SQLEDDLSQTHAIKEQLRKYI 114 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 244
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=71.49 E-value=26 Score=28.74 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Q 014013 141 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNK 183 (432)
Q Consensus 141 ~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~ 183 (432)
+.+.++..++..+..........+.++..+|..|+-+...|..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444444433333333
No 245
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=71.44 E-value=95 Score=29.49 Aligned_cols=67 Identities=18% Similarity=0.260 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 240 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~e 240 (432)
|...|..|+..+..+.......+.+-+-+.-++...+.++.+....|..|+++...+.-.|.+.+-|
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llD 172 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLD 172 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhC
Confidence 4455666666666666666666666777788888888888888888888888887777777766644
No 246
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=71.41 E-value=1.4e+02 Score=31.54 Aligned_cols=68 Identities=18% Similarity=0.295 Sum_probs=29.9
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 014013 353 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEI---VEKFQQYTNSI 420 (432)
Q Consensus 353 ~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L---~~~i~~Y~~~m 420 (432)
+..|+.|...+..++...+.+++....++...+.+.......+....+.+...+... ...+..|..+|
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el 346 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQEL 346 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444 22344444444
No 247
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.40 E-value=34 Score=27.73 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE 197 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~ 197 (432)
.+-.+..+...+..++..++..+..+...+...+.
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34455555555555555555555555554444443
No 248
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=71.35 E-value=1e+02 Score=29.74 Aligned_cols=74 Identities=22% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013 298 KDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 375 (432)
Q Consensus 298 ~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie 375 (432)
..+|.....+.++.-+|..|..||...+ +.|-+.-=. +-+++--..++++.+.+|++.++.++.-+..+++-|.
T Consensus 75 akLkes~~~l~dRetEI~eLksQL~RMr---EDWIEEECH-RVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 75 AKLKESENRLHDRETEIDELKSQLARMR---EDWIEEECH-RVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Confidence 3444455555555555555555554332 122111000 2344555667778888888888888777777655544
No 249
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=71.31 E-value=1.1e+02 Score=30.15 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKIS 144 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~ 144 (432)
..+..|+++|+.+-.++..+...+.
T Consensus 22 eK~~~L~kk~~ell~e~k~~~k~~~ 46 (309)
T PF09728_consen 22 EKLEALCKKYAELLEEMKRLQKQLK 46 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777666555543333
No 250
>PRK11281 hypothetical protein; Provisional
Probab=71.06 E-value=2.1e+02 Score=33.40 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
|++.|.++...+.+.......+..+...+..+.+.....+.+.......++.++..
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555555555555555555554433
No 251
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=70.60 E-value=1.1e+02 Score=29.97 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=6.9
Q ss_pred HHHHHHHhhHhhHHHHH
Q 014013 353 FENVKLEMESKRQDLEA 369 (432)
Q Consensus 353 ~~~l~~e~~~~~~e~~~ 369 (432)
+..|++|+..+++.+..
T Consensus 231 I~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444433333
No 252
>PF13514 AAA_27: AAA domain
Probab=70.57 E-value=2.2e+02 Score=33.34 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHcCCC
Q 014013 82 MKLYSMVKEVVTTVNCP 98 (432)
Q Consensus 82 l~~~~~~~~~~~~~gv~ 98 (432)
=.+......++..||+|
T Consensus 581 ~~~~~~W~~~~~~~g~p 597 (1111)
T PF13514_consen 581 AALEAAWAALWAAAGLP 597 (1111)
T ss_pred HHHHHHHHHHHhhcCCC
Confidence 34555566677778866
No 253
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=69.98 E-value=1.1e+02 Score=29.44 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 168 ~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
..++..++..+..+++.....+..+.+++...
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 254
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.72 E-value=2.2e+02 Score=33.04 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=27.6
Q ss_pred cccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 103 LKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE 158 (432)
Q Consensus 103 ~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~ 158 (432)
|.++++.+| +++..+|..+.. ...|..--..+.+....+...++.+.....
T Consensus 154 ~~~fl~a~~----~eR~~il~~l~g-~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~ 204 (1042)
T TIGR00618 154 FAQFLKAKS----KEKKELLMNLFP-LDQYTQLALMEFAKKKSLHGKAELLTLRSQ 204 (1042)
T ss_pred hHHHHhCCH----HHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444 334478888876 666554444445555555555555555443
No 255
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.12 E-value=1.7e+02 Score=32.79 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKH-QVSLRTTLNKLKEKTGALDEKFSQTEFDL 213 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~-q~~l~~~~~~~k~e~~el~~~l~~~~~~l 213 (432)
+-++..+..+++.+..+.... ...|...+............-+..+.+..
T Consensus 224 ~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~ 274 (771)
T TIGR01069 224 IVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQ 274 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556655555555443332 33555555555555444444444444433
No 256
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.77 E-value=1.3e+02 Score=29.86 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchh
Q 014013 137 SELEDKISQLNAEIAAYNEVRERELPL 163 (432)
Q Consensus 137 ~~l~~~i~~l~~~i~~~~~k~~~~~~~ 163 (432)
.++...|.+.+.-+.++........|.
T Consensus 78 ~EL~~~I~egr~~~~~~E~~~~~~nPp 104 (325)
T PF08317_consen 78 RELKKYISEGRQIFEEIEEETYESNPP 104 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 345556666666666666666555554
No 257
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=68.73 E-value=84 Score=27.78 Aligned_cols=42 Identities=10% Similarity=0.260 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 261 EKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLK 304 (432)
Q Consensus 261 ~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k 304 (432)
.+...+..|.. .||......-..++.++...++-++++...+
T Consensus 66 eVS~~f~~ysE--~dik~AYe~A~~lQ~~L~~~re~E~qLr~rR 107 (159)
T PF05384_consen 66 EVSRNFDRYSE--EDIKEAYEEAHELQVRLAMLREREKQLRERR 107 (159)
T ss_pred HHHhhhcccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433 4666666666666666666555555553333
No 258
>PF15294 Leu_zip: Leucine zipper
Probab=66.79 E-value=1.3e+02 Score=29.16 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 245 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l 245 (432)
+..++..|..+...|+.....+.......-.++..+...|.++.......+.. ..+ .--.+++..|...+..++..+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k-~~~-~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGK-KDL-SFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc-cccccchhhHHHHHHHHHHHH
Confidence 77788888888888888888888888888888888888887777633322211 000 112455555666666666554
No 259
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.78 E-value=73 Score=27.98 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHH
Q 014013 374 VEAVVTEVDAITSKTKFVKESGAAKLQELAS 404 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~ 404 (432)
++.+..+|..|+.+....+..|++++..+..
T Consensus 53 ~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~ 83 (155)
T PF06810_consen 53 NEELKKQIEELQAKNKTAKEEYEAKLAQMKK 83 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666665544
No 260
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=66.60 E-value=1.4e+02 Score=29.64 Aligned_cols=24 Identities=0% Similarity=-0.147 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCCCCCCcccccCC
Q 014013 84 LYSMVKEVVTTVNCPMNFTLKDLIRP 109 (432)
Q Consensus 84 ~~~~~~~~~~~~gv~~DFt~~Dl~~P 109 (432)
....+..||..+++| . ++-++-.|
T Consensus 29 ~~~~l~~~L~slnLP-~-~~~~~~~~ 52 (337)
T cd09234 29 KDEELDQFLSSLQLD-P-LNVMDMDG 52 (337)
T ss_pred HHHHHHHHHHhcCCC-h-hhhhccCC
Confidence 334578888889998 6 55566565
No 261
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=66.55 E-value=51 Score=28.38 Aligned_cols=103 Identities=14% Similarity=0.233 Sum_probs=31.5
Q ss_pred CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 108 RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS 187 (432)
Q Consensus 108 ~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~ 187 (432)
+|+|.++.=--+.-|..+..+...-.+.-......+..+...++.+..........+.++..+..+|..++..+-..+.-
T Consensus 18 nPdP~~~~Pv~i~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~ei 97 (141)
T PF13874_consen 18 NPDPSRLIPVPIIGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEI 97 (141)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcCeeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999888111112233333332222233333445555555555553333345556667777777777777666666665
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhH
Q 014013 188 LRTTLNKLKEKTGALDEKFSQTE 210 (432)
Q Consensus 188 l~~~~~~~k~e~~el~~~l~~~~ 210 (432)
++..--.+..+-..|..+++.+.
T Consensus 98 lr~~g~~l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 98 LRNRGYALSPEEEELRKRLEALE 120 (141)
T ss_dssp HHH--------------------
T ss_pred HHHcCCCCCHHHHHHHHHHHHHH
Confidence 55443344444444444444433
No 262
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.35 E-value=77 Score=27.94 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
....+..+|+.|+.++.+|......|..+...+..+...+......
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555544444444444443333
No 263
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.15 E-value=2.5e+02 Score=32.29 Aligned_cols=268 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 137 SELEDKISQLNAEIAAYNEVR---------ERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 137 ~~l~~~i~~l~~~i~~~~~k~---------~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
.++..+|.+|...+...+.|. -..+...+.....+++++.+|..+.+....+...+-..-..+..+..++.
T Consensus 407 Kd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~ 486 (1041)
T KOG0243|consen 407 KDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKE 486 (1041)
T ss_pred HHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 208 QTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAIL 287 (432)
Q Consensus 208 ~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~ 287 (432)
.++..+.....++..++..+.+.-..|+....-.+....--..+.+++ -.....++.... |++...+.+....
T Consensus 487 ~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a----~~l~~~~~~s~~---d~s~l~~kld~~~ 559 (1041)
T KOG0243|consen 487 KLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRA----TKLRRSLEESQD---DLSSLFEKLDRKD 559 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHHhhhhh
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHH
Q 014013 288 EQVNSAKSIEKDYKSLKARLND-DVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQD 366 (432)
Q Consensus 288 ~~~~~~ke~e~~~~~~k~~l~~-~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e 366 (432)
..-...+.+.... ...+.. .......+......+...+.....+..........-.+....++...+.-|.+....
T Consensus 560 ~~~d~n~~~~~~~---~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~ 636 (1041)
T KOG0243|consen 560 RLDDDNQEVIDDF---QSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLES 636 (1041)
T ss_pred ccccccHHHHHHH---hhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHH
Q ss_pred HHHHHHHHH-HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013 367 LEARQKKVE-AVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 367 ~~~~~~~ie-~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~ 414 (432)
......... ........|...+.....+.+.-+..+......+...+.
T Consensus 637 ~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~ 685 (1041)
T KOG0243|consen 637 LQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNIS 685 (1041)
T ss_pred HHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
No 264
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.99 E-value=99 Score=27.63 Aligned_cols=125 Identities=19% Similarity=0.225 Sum_probs=0.0
Q ss_pred chhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 114 TEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTL 192 (432)
Q Consensus 114 ~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~-~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~ 192 (432)
++ ..++.-...+..-...+.+++...-..+..+.+++..... .......+..++..|+.++..++. .+..+.
T Consensus 28 l~----~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~---~L~~ei 100 (177)
T PF07798_consen 28 LR----EVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ---ELREEI 100 (177)
T ss_pred HH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 014013 193 NKLKEKTG-ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 245 (432)
Q Consensus 193 ~~~k~e~~-el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l 245 (432)
..++.+.. ++..+-.............+..+..+|......|+..|+..+-.+
T Consensus 101 ~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 101 NKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 265
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.99 E-value=1.6e+02 Score=30.06 Aligned_cols=76 Identities=14% Similarity=0.207 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 245 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l 245 (432)
.......+..+|.+++..+..+...++.++.. +...+.-+...+.+-+-..++|+.++...-+--+..|..|+..|
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~---~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeL 285 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQ---YQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQEL 285 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666677777777777777777777664 23333444444555555566666666666666677777766665
No 266
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=65.91 E-value=37 Score=35.78 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 014013 173 ELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 216 (432)
Q Consensus 173 eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l 216 (432)
+|.++|.+++..++++...+...+.+...|+..++..+-.+.++
T Consensus 104 el~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 104 ELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333333333333333333333334444444443333333
No 267
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.73 E-value=1.5e+02 Score=29.43 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
.+..+..+..+|..++-.|..+.....+...+...+..+..+......
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq 179 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQ 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666665555555555555444444444444333
No 268
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=65.38 E-value=1.7e+02 Score=30.06 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=12.1
Q ss_pred CCCCCcchhHhhhhHHHHHHHHHHHH
Q 014013 108 RPDATRTEDTKMNLLRPIAEDLTRLD 133 (432)
Q Consensus 108 ~P~~~R~~~~~~~~ls~iin~~~~f~ 133 (432)
.|+|.+.. .++..+++.|....
T Consensus 140 ~~dp~~A~----~i~n~~~~~y~~~~ 161 (444)
T TIGR03017 140 GVDPRFAA----TVANAFAQAYIDTN 161 (444)
T ss_pred CCCHHHHH----HHHHHHHHHHHHHH
Confidence 35555555 66666665555443
No 269
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.03 E-value=1.7e+02 Score=29.93 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHH-HHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA-RQKKVEAVVTEVDAIT 385 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~-~~~~ie~~~~~i~~ie 385 (432)
.-+...|.+-.-+.++|+++++...+-....+..++..++...+..+=...||.+ ...-+|.....|.+||
T Consensus 247 ~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 247 QFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444556666677777777777766666544444444444333322222333332 3334555566666666
No 270
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.89 E-value=75 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 014013 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQS 216 (432)
Q Consensus 168 ~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l 216 (432)
.+.+..|...|.........+..+.+.+.-++..|..+++.+.+++...
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777788888777788888888888888888888888887777743
No 271
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=64.72 E-value=1.2e+02 Score=28.19 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 164 VQEVDAKVKELRQTIQDLNK----HQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~----~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
+..++.+...++.++..++. .|.....++..+..+-.++..+.-+++..+..++.++..|+..
T Consensus 145 ~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 145 LKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544 4555566666666666667666667777777777666666543
No 272
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=64.54 E-value=1.5e+02 Score=29.28 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013 346 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 346 ~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~ 391 (432)
.+|+.+...+|.+||-.-. .+....++.....|.++|++.+++
T Consensus 171 LaE~layqq~L~~eyQatf---~eq~~ml~kRQ~yI~~LEsKVqDL 213 (401)
T PF06785_consen 171 LAEALAYQQELNDEYQATF---VEQHSMLDKRQAYIGKLESKVQDL 213 (401)
T ss_pred HHHHHHHHHHHHHHhhccc---ccchhhhHHHHHHHHHHHHHHHHH
Confidence 4444555555656653211 111222333344455555554444
No 273
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.43 E-value=2e+02 Score=30.55 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 197 EKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 197 ~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.++..|..++++++..+..++.|++.++.-+
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal 73 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEAL 73 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555554443
No 274
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=64.36 E-value=57 Score=24.24 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 349 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 385 (432)
Q Consensus 349 ~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie 385 (432)
++.....+..|...+....+..+.+|+........+|
T Consensus 26 Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 26 LRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3344555556666665555555555555544444333
No 275
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.34 E-value=44 Score=25.91 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
+..+...|+..|..|-........+.+.++.++.-|..-|..+
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555554444444444
No 276
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.96 E-value=1.6e+02 Score=29.20 Aligned_cols=26 Identities=15% Similarity=0.425 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 396 AAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 396 e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
...+..+..+.+.+.+.+..|-+.+.
T Consensus 202 ~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 202 KERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888889999999999998777
No 277
>PRK11546 zraP zinc resistance protein; Provisional
Probab=63.94 E-value=45 Score=28.90 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Q 014013 371 QKKVEAVVTEVDAITSKTKFVKESGAAKLQE 401 (432)
Q Consensus 371 ~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~ 401 (432)
+..|..+.++|..|..++.+.+..+..++.+
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777777777766666554
No 278
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=63.52 E-value=47 Score=27.45 Aligned_cols=42 Identities=14% Similarity=0.089 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 014013 140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 181 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l 181 (432)
.+.+.++..++..+-.........+.++..+|..|+-+-..|
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~L 48 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKL 48 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444333333333333333333334444443333333
No 279
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.48 E-value=56 Score=23.92 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014013 278 KQSAQMQAILEQVNSAKS 295 (432)
Q Consensus 278 ~~~~~l~~~~~~~~~~ke 295 (432)
..|.--+.+.+++++++.
T Consensus 8 ~EirakQ~~~eEL~kvk~ 25 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKS 25 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555566655444
No 280
>PRK11281 hypothetical protein; Provisional
Probab=63.38 E-value=3e+02 Score=32.25 Aligned_cols=11 Identities=0% Similarity=0.268 Sum_probs=6.4
Q ss_pred HHHHHhHHHHH
Q 014013 382 DAITSKTKFVK 392 (432)
Q Consensus 382 ~~ie~~~~~~k 392 (432)
+.+..+|++++
T Consensus 356 ~~l~~~iAdlr 366 (1113)
T PRK11281 356 EGLADRIADLR 366 (1113)
T ss_pred chHHHHHHHHH
Confidence 44556666655
No 281
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=63.25 E-value=2.3e+02 Score=30.95 Aligned_cols=70 Identities=21% Similarity=0.341 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh-hcCHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI-VQSPE 232 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i-v~SPe 232 (432)
.+..+.....+|+..|..+.........++.....+...|...|......+..-...+..|+.|| .+-|.
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~ 233 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPP 233 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCc
Confidence 34566677777777777777777667777777777888888888888888888788888888888 44443
No 282
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.85 E-value=67 Score=29.07 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=17.0
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 014013 353 FENVKLEMESKRQDLEARQKKVEAVVTEVDAI 384 (432)
Q Consensus 353 ~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~i 384 (432)
.+.+.+|++.+..+++.++.+++...++++.+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555533
No 283
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=62.42 E-value=2.1e+02 Score=30.09 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 204 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~ 204 (432)
+.-+++++..-|...+..+.++..++.++..+..+...
T Consensus 252 ~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~ 289 (596)
T KOG4360|consen 252 LRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQ 289 (596)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433333
No 284
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=62.16 E-value=1.2e+02 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 190 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 190 ~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
.++..++.++..+..+|++-..++..++..+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~ 73 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIG 73 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888888777776665543
No 285
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.07 E-value=1.2e+02 Score=27.32 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 172 KELRQTIQDLNKHQVSLRTTLNKLKEK 198 (432)
Q Consensus 172 ~eLe~~L~~l~~~q~~l~~~~~~~k~e 198 (432)
+.+..++.+++++......+.+.++++
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ 183 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQ 183 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333333333
No 286
>PRK11519 tyrosine kinase; Provisional
Probab=61.98 E-value=2.6e+02 Score=31.02 Aligned_cols=46 Identities=9% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCC---CCCCcc--cccCCCCCcchhHhhhhHHHHHHHHHHHHHH
Q 014013 86 SMVKEVVTTVNCP---MNFTLK--DLIRPDATRTEDTKMNLLRPIAEDLTRLDEQ 135 (432)
Q Consensus 86 ~~~~~~~~~~gv~---~DFt~~--Dl~~P~~~R~~~~~~~~ls~iin~~~~f~ee 135 (432)
..+..+...+.|. ++=++- -...|+|.+.. .++.++++.|....-+
T Consensus 209 ~~~~~l~~~l~V~~~~k~S~ii~Is~~~~dP~~Aa----~iaN~l~~~Yi~~~~~ 259 (719)
T PRK11519 209 GMINNLQNNLTVTENGKDTGVLSLTYTGEDREQIR----DILNSITRNYLEQNIE 259 (719)
T ss_pred HHHHHHHhcceEEecCCCceEEEEEEEcCCHHHHH----HHHHHHHHHHHHHHHH
Confidence 4455566665553 111111 23467787777 7777777766555443
No 287
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=61.60 E-value=1.4e+02 Score=27.93 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014013 232 EKLQRTLEEKKSIREEAR 249 (432)
Q Consensus 232 e~Lk~~i~el~~~l~~l~ 249 (432)
.-|..+|.++...+.++.
T Consensus 27 ~~l~Q~ird~~~~l~~ar 44 (225)
T COG1842 27 KMLEQAIRDMESELAKAR 44 (225)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445666777776664433
No 288
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=61.47 E-value=49 Score=25.67 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 188 LRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 188 l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
+..+...++.....|..+++....+-..+.++..-|+.||
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI 60 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYI 60 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555577777776666
No 289
>PRK14127 cell division protein GpsB; Provisional
Probab=60.83 E-value=34 Score=28.18 Aligned_cols=59 Identities=17% Similarity=0.308 Sum_probs=40.0
Q ss_pred CCCcccccCCCCCcch-----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 100 NFTLKDLIRPDATRTE-----DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE 158 (432)
Q Consensus 100 DFt~~Dl~~P~~~R~~-----~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~ 158 (432)
.+|..||.+-+.++.. ++-=.+|..|+..|..|..+...+.+++..++.+++++..+..
T Consensus 5 ~LTp~DI~~KeF~~~~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 5 KLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCCHHHHhhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566666666654333 3334677788877888888888887777777777777766544
No 290
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=60.23 E-value=2.7e+02 Score=30.64 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=32.0
Q ss_pred HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 341 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 385 (432)
Q Consensus 341 ~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie 385 (432)
.+.++.+.+....+.++..++.+.++.++.+..++.+..+++.++
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455556666777777888887787777777787777777666
No 291
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=60.13 E-value=93 Score=26.59 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
.++..+-.+|.+|.-+|..++-+-.+|+..|..+.
T Consensus 4 GVl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LE 38 (134)
T PF08232_consen 4 GVLHFLQTEWHRFERDRNQWEIERAEMKARIAFLE 38 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45666777788887777776555444444444443
No 292
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=59.43 E-value=1e+02 Score=25.55 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014013 376 AVVTEVD 382 (432)
Q Consensus 376 ~~~~~i~ 382 (432)
.+..++.
T Consensus 85 ~l~~~l~ 91 (126)
T PF13863_consen 85 KLKAELE 91 (126)
T ss_pred HHHHHHH
Confidence 3333333
No 293
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=59.21 E-value=3e+02 Score=30.83 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 177 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 177 ~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
++.++......+......+-..++.+...+.++...+..+-..+..|..
T Consensus 510 kIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD 558 (769)
T PF05911_consen 510 KISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD 558 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH
Confidence 3344444444444444554555555555666665555555555444444
No 294
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.04 E-value=88 Score=24.71 Aligned_cols=48 Identities=13% Similarity=0.249 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHH
Q 014013 190 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 237 (432)
Q Consensus 190 ~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~ 237 (432)
.++..+......|..+|.........++.-+..+..+++...+.++..
T Consensus 39 ~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~v 86 (89)
T PF13747_consen 39 EEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAV 86 (89)
T ss_pred HHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444455555555444444443
No 295
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.44 E-value=1e+02 Score=32.05 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLK 196 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k 196 (432)
.++++.++..+...-..+..+-++++
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 296
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=58.30 E-value=7.5 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHhhcCc
Q 014013 5 DYPRLSATEIVTILTETEI 23 (432)
Q Consensus 5 ~fP~l~~~eIv~~L~~~~~ 23 (432)
-||.+++..|..||..++.
T Consensus 11 mFP~~~~~~I~~~L~~~~~ 29 (42)
T PF02845_consen 11 MFPDLDREVIEAVLQANNG 29 (42)
T ss_dssp HSSSS-HHHHHHHHHHTTT
T ss_pred HCCCCCHHHHHHHHHHcCC
Confidence 5999999999999988765
No 297
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=58.18 E-value=1.5e+02 Score=26.97 Aligned_cols=30 Identities=10% Similarity=-0.053 Sum_probs=13.7
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 305 ARLNDDVVLDKSLEAKLIERQGKVEQLDEL 334 (432)
Q Consensus 305 ~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~ 334 (432)
-.+.++|..+..+-.....+-..+..+-+.
T Consensus 77 i~C~ERGlLL~rvrde~~~~l~~y~~l~~s 106 (189)
T PF10211_consen 77 IDCPERGLLLLRVRDEYRMTLDAYQTLYES 106 (189)
T ss_pred hCcHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444444444444444444443
No 298
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=57.80 E-value=2.2e+02 Score=29.01 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 168 ~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
.++...+..+|..-.+.+..+.++...+..+-..+..++...+.++.+++.|...|...-|.
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555556666666666666666666666666666777777777666666555
No 299
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.11 E-value=1.8e+02 Score=31.14 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013 377 VVTEVDAITSKTKFVKESGAAKLQELASKAE 407 (432)
Q Consensus 377 ~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~ 407 (432)
+....+.+...+++++.+-+..++.+...|.
T Consensus 242 l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 242 LQNDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence 3444455555555666666666666665543
No 300
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=56.99 E-value=22 Score=28.79 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 164 VQEVDAKVKELRQTI-QDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 164 i~el~~e~~eLe~~L-~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
...+..+..+|.+.| .+.|+--..-+.+...+..+...+..++.+....+..+..++..|+..+..
T Consensus 17 ~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~ 83 (100)
T PF06428_consen 17 KEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMES 83 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555 444444444445555555666666666666666666666666666555444
No 301
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=56.86 E-value=67 Score=23.96 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+|+....-.+..|.+|+.........++.+......|..++.+
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444443
No 302
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=56.84 E-value=1.2e+02 Score=25.65 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHh
Q 014013 327 KVEQLDELQQQLEKERNLKSEDATRAFENVKLEM 360 (432)
Q Consensus 327 k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~ 360 (432)
+++++-+.+..-+++..+|++.+-.++++..+-.
T Consensus 51 ql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~ 84 (126)
T PF07889_consen 51 QLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEIS 84 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333333333333333344444444444333333
No 303
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.73 E-value=1.1e+02 Score=32.37 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 124 PIAEDLTRLDEQRSELEDKISQLNAEI 150 (432)
Q Consensus 124 ~iin~~~~f~eer~~l~~~i~~l~~~i 150 (432)
.+-+++..++.+...+.+++..++..+
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 304
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.63 E-value=2.6e+02 Score=29.47 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 180 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 180 ~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
.++..+.+|......|..+...|.+-|..+...+..-..+|+.|+
T Consensus 470 ~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 470 NISRLQDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666777777888888888888877777777777776
No 305
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=56.00 E-value=2.1e+02 Score=28.12 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 138 ELEDKISQLNAEIAAYNEVRERELPL-VQEVDAKVKELRQTIQDLNKH--------QVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 138 ~l~~~i~~l~~~i~~~~~k~~~~~~~-i~el~~e~~eLe~~L~~l~~~--------q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+.+.+..++...-.+..+.+..+.. .+.|..+++.|+.+-..|-.. -..|...+..+..++.++...++.
T Consensus 52 ~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~ 131 (310)
T PF09755_consen 52 HLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQ 131 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444433322 244555555555444444211 124556677777777777777774
Q ss_pred -hHHHHHHHHHHHHHHHhhhhcCHH
Q 014013 209 -TEFDLVQSVQQNADLRSKIVQSPE 232 (432)
Q Consensus 209 -~~~~l~~l~~e~~~L~~~iv~SPe 232 (432)
-.+.+..+...+.+|......-+.
T Consensus 132 EqE~~V~kL~k~i~~Le~e~~~~q~ 156 (310)
T PF09755_consen 132 EQEYLVNKLQKKIERLEKEKSAKQE 156 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456677777777777765544443
No 306
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.35 E-value=2e+02 Score=27.74 Aligned_cols=10 Identities=10% Similarity=0.136 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 014013 213 LVQSVQQNAD 222 (432)
Q Consensus 213 l~~l~~e~~~ 222 (432)
+.+++.||..
T Consensus 119 LKEARkEIkQ 128 (305)
T PF15290_consen 119 LKEARKEIKQ 128 (305)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 307
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.27 E-value=1.6e+02 Score=29.34 Aligned_cols=12 Identities=17% Similarity=0.152 Sum_probs=5.5
Q ss_pred hcCHHHHHHHHH
Q 014013 228 VQSPEKLQRTLE 239 (432)
Q Consensus 228 v~SPe~Lk~~i~ 239 (432)
-.+|+.-.....
T Consensus 139 ~~dP~~A~~ian 150 (362)
T TIGR01010 139 AFDAEEAQKINQ 150 (362)
T ss_pred ecCHHHHHHHHH
Confidence 345555443333
No 308
>PLN02678 seryl-tRNA synthetase
Probab=55.02 E-value=1.3e+02 Score=31.36 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 126 AEDLTRLDEQRSELEDKISQLNAEIAAYNEV 156 (432)
Q Consensus 126 in~~~~f~eer~~l~~~i~~l~~~i~~~~~k 156 (432)
+.++..+.+++..+..+++.++.+...+...
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~ 62 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKE 62 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666665555444433
No 309
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=55.01 E-value=11 Score=32.29 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHHHHh
Q 014013 4 FDYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL 50 (432)
Q Consensus 4 ~~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l~~~ 50 (432)
+|+-.++..||+..+.++|-|-+-..|.. |.|++|.+|=..|=..+
T Consensus 58 ~S~R~~~~~evi~~I~~~G~PviVAtDV~-p~P~~V~Kia~~f~A~l 103 (138)
T PF04312_consen 58 KSSRNMSRSEVIEWISEYGKPVIVATDVS-PPPETVKKIARSFNAVL 103 (138)
T ss_pred EeecCCCHHHHHHHHHHcCCEEEEEecCC-CCcHHHHHHHHHhCCcc
Confidence 46677999999999999999866666755 55999999888776333
No 310
>PLN02939 transferase, transferring glycosyl groups
Probab=54.83 E-value=3.8e+02 Score=30.79 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 214 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~ 214 (432)
++..+..|.-|+......-.+++++-.++..|..++.-++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (977)
T PLN02939 137 IQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLS 180 (977)
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 33334444444444444444444444444444444444433333
No 311
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.60 E-value=51 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014013 182 NKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 182 ~~~q~~l~~~~~~~k~e~~el 202 (432)
+.....|..+++.+..++..|
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L 31 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKL 31 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443333333333
No 312
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=54.37 E-value=2.9e+02 Score=29.26 Aligned_cols=110 Identities=19% Similarity=0.230 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------
Q 014013 139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ---------- 208 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~---------- 208 (432)
++..+.++...+.++...-+.....+......-.+|+..+..-.....+ .+..+.++...+...++.
T Consensus 116 iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge---~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ 192 (570)
T COG4477 116 IEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGE---AAPELEKKLENIEEELSQFVELTSSGDY 192 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 4445555555555554433334444444444444454444443333332 222223333333333322
Q ss_pred --hHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 014013 209 --TEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDA 251 (432)
Q Consensus 209 --~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~ 251 (432)
+..-+.++......|++++-+-|.-+...-.++=.++++|++.
T Consensus 193 ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~G 237 (570)
T COG4477 193 IEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAG 237 (570)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 2444677788888888888888877765544444444444433
No 313
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.72 E-value=2.3e+02 Score=27.86 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014013 144 SQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL 213 (432)
Q Consensus 144 ~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l 213 (432)
..+.-+++-++.+.++.+..+-++..++.+.-..+..++.....+..++..++.+......-|.+.+.-+
T Consensus 108 ~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVl 177 (302)
T PF09738_consen 108 SALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVL 177 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeee
Confidence 3444455555555554444444444444444444444444444555555555555544444444443333
No 314
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.64 E-value=1.3e+02 Score=31.09 Aligned_cols=29 Identities=38% Similarity=0.629 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 127 EDLTRLDEQRSELEDKISQLNAEIAAYNE 155 (432)
Q Consensus 127 n~~~~f~eer~~l~~~i~~l~~~i~~~~~ 155 (432)
+++..+..++..+..+++.++.+...+..
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk 56 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSK 56 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555444433
No 315
>COG5570 Uncharacterized small protein [Function unknown]
Probab=53.40 E-value=32 Score=24.17 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 014013 210 EFDLVQSVQQNADLRSK 226 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~ 226 (432)
......++.+|++|+++
T Consensus 39 KRrKL~lKeeIEkLka~ 55 (57)
T COG5570 39 KRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 33334445555555543
No 316
>PTZ00332 paraflagellar rod protein; Provisional
Probab=53.33 E-value=2.9e+02 Score=28.94 Aligned_cols=26 Identities=12% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHHHHHcCCCCCCCcccccCCCCCcch
Q 014013 88 VKEVVTTVNCPMNFTLKDLIRPDATRTE 115 (432)
Q Consensus 88 ~~~~~~~~gv~~DFt~~Dl~~P~~~R~~ 115 (432)
+.++|..||++ .+-+.||+|+.+-+-
T Consensus 78 ~~~lm~~C~L~--ms~r~l~~~e~~~~~ 103 (589)
T PTZ00332 78 LAKLMRVCGLE--MSQRELYRPEDKPQF 103 (589)
T ss_pred HHHHHHHccch--hhHHHhcCccccccH
Confidence 68999999996 999999999855444
No 317
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=53.11 E-value=2.2e+02 Score=27.43 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013 349 ATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 349 ~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~ 391 (432)
..+++...+.+.+....++.+.+.++..+..++.++...+..+
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344554555555555555555555555555554444444333
No 318
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.05 E-value=3.2e+02 Score=29.41 Aligned_cols=6 Identities=0% Similarity=-0.103 Sum_probs=2.9
Q ss_pred HHHHHH
Q 014013 129 LTRLDE 134 (432)
Q Consensus 129 ~~~f~e 134 (432)
|..|..
T Consensus 354 Y~~yk~ 359 (652)
T COG2433 354 YLAYKP 359 (652)
T ss_pred HHHHHH
Confidence 555544
No 319
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=52.11 E-value=1.3e+02 Score=24.55 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLR 189 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~ 189 (432)
.+.+..++..+......+.
T Consensus 12 ~q~~q~~~~~l~~q~~~le 30 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVE 30 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 320
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=51.44 E-value=2.1e+02 Score=26.65 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK 392 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k 392 (432)
++..+..+...++.+...- +..-.++..++..|...........-..+..+..++.+|..+..+....+
T Consensus 148 le~~l~~~k~~ie~vN~~R-------K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 148 LEKELAKLKKEIEEVNRER-------KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444443333 33333344555555555555544444444444445555554444444443
No 321
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.32 E-value=51 Score=31.40 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
.+|.+||.++.........++.+++.++.++-.|-.++
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666666665554444
No 322
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.23 E-value=71 Score=31.63 Aligned_cols=50 Identities=24% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 180 DLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 180 ~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
.+...|+.+....++++.-+++|...++.++.+...+...++=|.+.+..
T Consensus 229 ~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 229 RLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33334444444444444444444444455555555555555555554443
No 323
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=50.81 E-value=1.1e+02 Score=26.83 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=53.7
Q ss_pred HHHHHHHhhcCc-C-CCChhhcCCCChhHHHHHHHHHHHHhccCCCCchhhhcHHHhhcCCCchhHHHHHHHHHHHHHHH
Q 014013 12 TEIVTILTETEI-A-VITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVK 89 (432)
Q Consensus 12 ~eIv~~L~~~~~-~-~~t~~dl~kPt~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~~l~~~~~~~ 89 (432)
..|..+|...|+ + .++...|..||.--...||..++..++.. . .+ ..-+++- +-
T Consensus 43 ~~I~~fL~~~~~~~~~is~k~l~~Pt~kdf~~I~~fL~~~idp~-~------~~--------~~k~eee---------v~ 98 (157)
T PF03801_consen 43 RKIYEFLSEHGFESHPISPKTLKSPTQKDFVEIFNFLFRQIDPN-F------KF--------GKKFEEE---------VP 98 (157)
T ss_dssp HHHHHHHHHTT--SS---TTTTSS--HHHHHHHHHHHHHTTSTT------------------SSTHHHH---------HH
T ss_pred HHHHHHHHHcCCCCccccccccCCCCHHHHHHHHHHHHHHhCCC-C------Cc--------CcCHHHH---------HH
Confidence 578888888888 2 48999999999999999998888666521 1 11 0011111 12
Q ss_pred HHHHHcCCCC-CCCcccccCCCCCcchhHhhhhHHHHHHHHHHHH
Q 014013 90 EVVTTVNCPM-NFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLD 133 (432)
Q Consensus 90 ~~~~~~gv~~-DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~ 133 (432)
.+|+.+|+|- .+|=.=|..|.+..+--..+..|.=+++ +..+.
T Consensus 99 ~~lK~L~YP~~~isKS~L~a~gs~hsWP~lL~~L~WLv~-l~~~~ 142 (157)
T PF03801_consen 99 FLLKALGYPFATISKSSLQAPGSPHSWPHLLGALHWLVE-LIKYE 142 (157)
T ss_dssp HHHHHTT-SS----HHHHHSTTSTTTHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHhCCCccccCHHHccCCCCcccHHHHHHHHHHHHH-HHHHH
Confidence 5778889883 3355678888887755222244444455 44443
No 324
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.59 E-value=2.3e+02 Score=26.90 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 139 LEDKISQLNAEIAAY 153 (432)
Q Consensus 139 l~~~i~~l~~~i~~~ 153 (432)
++.++.+++.+....
T Consensus 10 le~rL~q~eee~~~a 24 (246)
T PF00769_consen 10 LEERLRQMEEEMRRA 24 (246)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 325
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=50.44 E-value=36 Score=35.75 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccC
Q 014013 399 LQELASKAEEIVEKFQQYTNSIGTLLPVTEIES 431 (432)
Q Consensus 399 i~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~~~~ 431 (432)
+..|..+|+.|.+.++.|...+..+|.-|.||-
T Consensus 538 Lnsiqk~YesLv~kv~~yt~nLk~~inNcqiEK 570 (574)
T PF07462_consen 538 LNSIQKEYESLVNKVNTYTENLKKFINNCQIEK 570 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 478899999999999999999999999999974
No 326
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=50.28 E-value=3.1e+02 Score=28.41 Aligned_cols=47 Identities=9% Similarity=0.220 Sum_probs=27.0
Q ss_pred hHhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 014013 116 DTKMNLLRPIAE--DLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP 162 (432)
Q Consensus 116 ~~~~~~ls~iin--~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~ 162 (432)
+.++|-++.-.. ....-+++-...+.++...+..+-.++++....+|
T Consensus 229 E~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP 277 (434)
T PRK15178 229 EQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDP 277 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCh
Confidence 666787777653 12222334444556666667777777766554444
No 327
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.26 E-value=3e+02 Score=28.25 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 395 GAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 395 ~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
+..++..+..+-..++=.++.||+.+.
T Consensus 462 sqdeLmqafqeqeeiNfRL~~yid~ii 488 (502)
T KOG0982|consen 462 SQDELMQAFQEQEEINFRLKFYIDFII 488 (502)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHhHHH
Confidence 445555555555666666677877665
No 328
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=49.90 E-value=1.7e+02 Score=25.17 Aligned_cols=82 Identities=28% Similarity=0.387 Sum_probs=53.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHH
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLE 239 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~ 239 (432)
.-|.+..+......+......+-+.-.++...+..++.+.......+..+........++...+ .-.-||+.|...+.
T Consensus 25 ~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l--~~~~s~~~l~~~L~ 102 (150)
T PF07200_consen 25 SLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL--SSNYSPDALLARLQ 102 (150)
T ss_dssp GGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHHHHHHH
Confidence 4555666777777777777777777667777777777777777777777777777777766666 44567887777665
Q ss_pred HHHH
Q 014013 240 EKKS 243 (432)
Q Consensus 240 el~~ 243 (432)
....
T Consensus 103 ~~~~ 106 (150)
T PF07200_consen 103 AAAS 106 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 329
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=49.40 E-value=3.2e+02 Score=30.37 Aligned_cols=20 Identities=10% Similarity=0.315 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHcCCC
Q 014013 79 VQIMKLYSMVKEVVTTVNCP 98 (432)
Q Consensus 79 ~~~l~~~~~~~~~~~~~gv~ 98 (432)
+.++.-...+.+....+++.
T Consensus 91 ieiLkSr~v~~~VV~~L~L~ 110 (726)
T PRK09841 91 IQLLQSRMILGKTIAELNLR 110 (726)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 34444445555666655553
No 330
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=49.34 E-value=1.3e+02 Score=26.10 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 385 TSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 385 e~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
..+|+.+++.++.++..+...-..|.+.+..|...-
T Consensus 27 ~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 62 (149)
T PF07352_consen 27 NDEIARIKEWYEAEIAPLQNRIEYLEGLLQAYAEAN 62 (149)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 456668888888888999999999999999997653
No 331
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.10 E-value=80 Score=23.64 Aligned_cols=7 Identities=14% Similarity=0.757 Sum_probs=3.8
Q ss_pred CHHHHHH
Q 014013 230 SPEKLQR 236 (432)
Q Consensus 230 SPe~Lk~ 236 (432)
||+.+..
T Consensus 53 ~~~~ie~ 59 (80)
T PF04977_consen 53 DPDYIEK 59 (80)
T ss_pred CHHHHHH
Confidence 5655543
No 332
>PRK10698 phage shock protein PspA; Provisional
Probab=48.98 E-value=2.3e+02 Score=26.44 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=12.3
Q ss_pred CHH-HHHHHHHHHHHHHHHH
Q 014013 230 SPE-KLQRTLEEKKSIREEA 248 (432)
Q Consensus 230 SPe-~Lk~~i~el~~~l~~l 248 (432)
+|+ -|...+.+|...+.++
T Consensus 24 DP~k~l~q~i~em~~~l~~~ 43 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEV 43 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 677 5666667777666444
No 333
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.88 E-value=99 Score=22.24 Aligned_cols=44 Identities=16% Similarity=0.387 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+|..+++.|..++..|......++.+....+.+......+|..
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444455555555555444444443
No 334
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.86 E-value=3.4e+02 Score=28.43 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 141 DKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 141 ~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
.+|+.+...+.++........+.|.++..++.+|..+|..+=..|+-++..=-.++..-++|..++
T Consensus 355 ~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kl 420 (508)
T KOG3091|consen 355 IRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKL 420 (508)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHH
Confidence 345555555555552233456677888888888888888877777766543323333333333333
No 335
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=48.38 E-value=1.8e+02 Score=25.23 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---HHHHHHHHHHHHHHHHH
Q 014013 345 KSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG---AAKLQELASKAEEIVEK 412 (432)
Q Consensus 345 ~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~---e~ei~~~~~~~~~L~~~ 412 (432)
+.++..+++..++++.+.+. +..+++++.++++|+.+..++.-+...+ +.|.+.+...|+.....
T Consensus 60 rveEetkrLa~ireeLE~l~---dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 60 RVEEETKRLAEIREELEVLA---DPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555665555554322 1223344444444444444444443332 44555555555544433
No 336
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=47.99 E-value=1.3e+02 Score=23.54 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 014013 197 EKTGALDEKFSQTEFDLVQSVQQ 219 (432)
Q Consensus 197 ~e~~el~~~l~~~~~~l~~l~~e 219 (432)
.++..+...+...+.++..+.++
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 44444444444444444444443
No 337
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=47.98 E-value=2.4e+02 Score=26.51 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013 156 VRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 235 (432)
Q Consensus 156 k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk 235 (432)
+-.+.++-..+...++..|+..|+.+.+.-..+.....++-.-..+.-.-+..+... | .|| .|-
T Consensus 16 k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~------E---------~~~-~ls 79 (234)
T cd07664 16 KMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNS------E---------DHT-ALS 79 (234)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------c---------ccc-hHH
Confidence 334455666777788888888888888877777766655544444333333222210 1 112 355
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 236 RTLEEKKSIREEARDA-EKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAI 286 (432)
Q Consensus 236 ~~i~el~~~l~~l~~~-e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~ 286 (432)
+.+..+...-..++.+ ++.+.+.+-.....++-|.++..-|..++.....+
T Consensus 80 ~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~ 131 (234)
T cd07664 80 RALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKC 131 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554433333333 22222333344456666666666665555444433
No 338
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=47.89 E-value=1.8e+02 Score=29.91 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 126 AEDLTRLDEQRSELEDKISQLNAEIAAYNE 155 (432)
Q Consensus 126 in~~~~f~eer~~l~~~i~~l~~~i~~~~~ 155 (432)
+.++..+..++..+..+++.++.+...+..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk 58 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSK 58 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666665555555555444433
No 339
>PF14282 FlxA: FlxA-like protein
Probab=47.13 E-value=84 Score=25.64 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014013 314 DKSLEAKLIERQGKVEQLDE 333 (432)
Q Consensus 314 ~~~l~~ql~~~~~k~~~l~~ 333 (432)
+..|+.|+..++.++..|..
T Consensus 21 I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 21 IEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 45566666666666655544
No 340
>PHA03011 hypothetical protein; Provisional
Probab=47.10 E-value=1.5e+02 Score=23.87 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013 346 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 396 (432)
Q Consensus 346 ~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e 396 (432)
.+++..+++.|-.||.-+.-++..-..-+..--.++-.+..+|+.+|++..
T Consensus 66 ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 66 LDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 344556666666777666555555444455555566666666666666543
No 341
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=46.62 E-value=3.1e+02 Score=27.33 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhhc-CHH--HHHHHHHHHHHHH
Q 014013 203 DEKFSQTEFDLVQSVQQNADLRSKIVQ-SPE--KLQRTLEEKKSIR 245 (432)
Q Consensus 203 ~~~l~~~~~~l~~l~~e~~~L~~~iv~-SPe--~Lk~~i~el~~~l 245 (432)
...+.++...+..++.+...++.+.-. +|. .++..+..+...+
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQI 258 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHH
Confidence 334555555555566666666555544 554 3444445554444
No 342
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=46.46 E-value=18 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHhhcC
Q 014013 5 DYPRLSATEIVTILTETE 22 (432)
Q Consensus 5 ~fP~l~~~eIv~~L~~~~ 22 (432)
-||.++...|..||..++
T Consensus 12 mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 12 MFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HCCCCCHHHHHHHHHHcC
Confidence 599999999999999764
No 343
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=46.37 E-value=3.7e+02 Score=28.19 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 371 QKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 416 (432)
Q Consensus 371 ~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y 416 (432)
+..++.+..++..++.+-..-......+|+.+...-.+|......-
T Consensus 146 ~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 146 REQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555655555555554444433
No 344
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.08 E-value=3.9e+02 Score=28.34 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014013 358 LEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE 393 (432)
Q Consensus 358 ~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~ 393 (432)
.....+..+++++...|+.+...++..+..|+.+..
T Consensus 454 ~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~ 489 (570)
T COG4477 454 HEIQDLMKELSEVPINMEAVSALVDIATEDMNTLED 489 (570)
T ss_pred hHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555544
No 345
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=46.05 E-value=1.9e+02 Score=25.39 Aligned_cols=49 Identities=22% Similarity=0.312 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH
Q 014013 196 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR 245 (432)
Q Consensus 196 k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l 245 (432)
+.+...+...+..+...+......+..|+. -+.+.+.|+..|++++...
T Consensus 19 K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~-~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 19 KAKVDKVKEERDNLKTQLKEADKQIKDLKK-SAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHH
Confidence 333333344444455555555555566665 3677788888888877655
No 346
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.92 E-value=4.2e+02 Score=28.69 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014013 170 KVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 215 (432)
Q Consensus 170 e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~ 215 (432)
++.+++.+|..|....+.|.-.+.-+..+..+-..+|.++++.|..
T Consensus 105 ~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~ 150 (861)
T KOG1899|consen 105 EYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEE 150 (861)
T ss_pred cchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666666554
No 347
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=45.77 E-value=1.6e+02 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.374 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTG 200 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~ 200 (432)
...+++.|..+.....+|...+..+-++++
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~ 39 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENA 39 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333333333333
No 348
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=45.61 E-value=6.8 Score=33.00 Aligned_cols=34 Identities=32% Similarity=0.648 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 153 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~ 153 (432)
.+|..+...+..|..+...+...+..++..+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5666666666666666555555554444444333
No 349
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.41 E-value=3.2e+02 Score=27.18 Aligned_cols=67 Identities=13% Similarity=0.235 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Q 014013 346 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVD---AITSKTKFVKESGAAKLQELASKAEEIVEK 412 (432)
Q Consensus 346 ~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~---~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~ 412 (432)
+.++..++..|+.+|.....+....+.+++....++. .+-.....-+..-...+..+......|.+.
T Consensus 244 l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~GD 313 (344)
T PF12777_consen 244 LAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLVGD 313 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccHHH
Confidence 3334444555555555544444444444433322222 222222333333344444444444444443
No 350
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=45.33 E-value=5.6e+02 Score=29.89 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=22.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 117 TKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 117 ~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
++-.+|..|.+ ...|..=...+.++.......+..+....
T Consensus 168 eR~~il~~l~g-~~~y~~~~~~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 168 ERAELLEELTG-TEIYGQISAMVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred HHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33367888776 66665433444455555555555555554
No 351
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=45.32 E-value=1.1e+02 Score=21.87 Aligned_cols=22 Identities=9% Similarity=0.406 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQ 185 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q 185 (432)
+..+.++|+++...+..+++..
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 352
>PRK00846 hypothetical protein; Provisional
Probab=45.01 E-value=1.4e+02 Score=22.94 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
|+.+..-.+.-|.+||..........+.++....-+..++.
T Consensus 18 LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 18 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444433333
No 353
>PRK02793 phi X174 lysis protein; Provisional
Probab=45.01 E-value=1.3e+02 Score=22.64 Aligned_cols=6 Identities=33% Similarity=0.567 Sum_probs=2.1
Q ss_pred HHHHHH
Q 014013 179 QDLNKH 184 (432)
Q Consensus 179 ~~l~~~ 184 (432)
.+|++.
T Consensus 25 e~Ln~~ 30 (72)
T PRK02793 25 EELNVT 30 (72)
T ss_pred HHHHHH
Confidence 333333
No 354
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=45.00 E-value=23 Score=28.15 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=27.2
Q ss_pred HHHHHcCCCCC-CCccccc-CCCCCcchhHhhhhHHHHHH
Q 014013 90 EVVTTVNCPMN-FTLKDLI-RPDATRTEDTKMNLLRPIAE 127 (432)
Q Consensus 90 ~~~~~~gv~~D-Ft~~Dl~-~P~~~R~~~~~~~~ls~iin 127 (432)
+++..+||+.. |+..||+ +|+++.+. ..+..+..
T Consensus 69 ~~~~~~gi~~~~~~~~Dl~~~~n~~~vl----~~l~~l~~ 104 (107)
T cd00014 69 NFAEKLGVPVVNFDAEDLVEDGDEKLVL----GLLWSLIR 104 (107)
T ss_pred HHHHHcCCceeccCHHHHhhCCCceeeH----HHHHHHHH
Confidence 44445899844 9999999 99999999 88877765
No 355
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.96 E-value=90 Score=32.50 Aligned_cols=6 Identities=0% Similarity=0.385 Sum_probs=2.7
Q ss_pred HHHHHH
Q 014013 122 LRPIAE 127 (432)
Q Consensus 122 ls~iin 127 (432)
+.++|+
T Consensus 54 ~~~vV~ 59 (475)
T PRK13729 54 MTGVVD 59 (475)
T ss_pred ccceec
Confidence 344554
No 356
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=44.93 E-value=1.1e+02 Score=21.65 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHH
Q 014013 324 RQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLE 368 (432)
Q Consensus 324 ~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~ 368 (432)
|..++..|+.++...++.+..--..++..+.+|..|-..+..+++
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666665555554455556666666666655555444
No 357
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.92 E-value=2.1e+02 Score=30.35 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
...++++...+++++..++.+++.+.
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~ 98 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALK 98 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 358
>PRK00295 hypothetical protein; Provisional
Probab=44.38 E-value=1.3e+02 Score=22.39 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
.+..|.+||....+....+..+....
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 359
>PRK00736 hypothetical protein; Provisional
Probab=44.22 E-value=1.3e+02 Score=22.38 Aligned_cols=40 Identities=28% Similarity=0.513 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
|+.+..-.+..|.+||....+....+..+..+...|..++
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444443333333333
No 360
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.96 E-value=1.5e+02 Score=22.91 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013 367 LEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407 (432)
Q Consensus 367 ~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~ 407 (432)
+...-.+++.+...+-.+|..-..+|..||.||..+..+..
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677788888888888888888888887766543
No 361
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.81 E-value=96 Score=32.33 Aligned_cols=7 Identities=0% Similarity=-0.088 Sum_probs=3.1
Q ss_pred hHHHHHH
Q 014013 121 LLRPIAE 127 (432)
Q Consensus 121 ~ls~iin 127 (432)
.|...++
T Consensus 61 ~FddkVn 67 (475)
T PRK13729 61 TFDDKVR 67 (475)
T ss_pred hhHHHHH
Confidence 3444445
No 362
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.52 E-value=1.4e+02 Score=22.35 Aligned_cols=11 Identities=0% Similarity=0.241 Sum_probs=4.5
Q ss_pred HHHHHHhHHHH
Q 014013 381 VDAITSKTKFV 391 (432)
Q Consensus 381 i~~ie~~~~~~ 391 (432)
+.+++.++.++
T Consensus 36 i~~~~~~l~~I 46 (71)
T PF10779_consen 36 IKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 363
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.39 E-value=2.1e+02 Score=24.33 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNE 155 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~ 155 (432)
-+..+...+..+..+-..+...+..+...+.++..
T Consensus 7 ~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~ 41 (140)
T PRK03947 7 ELEELAAQLQALQAQIEALQQQLEELQASINELDT 41 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555554443
No 364
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=43.09 E-value=22 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=19.4
Q ss_pred CHHHHHHHHhhcCcCCCChhhc
Q 014013 10 SATEIVTILTETEIAVITENDL 31 (432)
Q Consensus 10 ~~~eIv~~L~~~~~~~~t~~dl 31 (432)
++.+++..-++.|+ .||++||
T Consensus 28 ~~~e~~~lA~~~Gy-~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGY-DFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCC-CCCHHHh
Confidence 78999999999999 7999987
No 365
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=42.89 E-value=3.6e+02 Score=27.01 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIA 151 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~ 151 (432)
+|..++..+.++.+....+....++|+.++.
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~ 161 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEAN 161 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444444444444333
No 366
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.83 E-value=4.6e+02 Score=29.50 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 178 IQDLNKHQVSLRTTLNKLKEKTGA 201 (432)
Q Consensus 178 L~~l~~~q~~l~~~~~~~k~e~~e 201 (432)
+.++.+...++....+++++++..
T Consensus 543 ~~e~~~~~~~l~~~~~~l~~~~~~ 566 (782)
T PRK00409 543 LKEAEKLKEELEEKKEKLQEEEDK 566 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 367
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=42.59 E-value=1.5e+02 Score=22.58 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 365 QDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 365 ~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
.++...+..++.+......+...-..-...+...+..+...|..|...+..+...+.
T Consensus 48 ~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~Le 104 (105)
T PF00435_consen 48 EEIESRQERLESLNEQAQQLIDSGPEDSDEIQEKLEELNQRWEALCELVEERRQKLE 104 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344444444555555555443322333345566777777777777777777766553
No 368
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=42.47 E-value=2.6e+02 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Q 014013 372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE 408 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~ 408 (432)
.+.+.+...+.....+|..-+..|++|.+.+......
T Consensus 73 ~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~ 109 (228)
T PRK06800 73 ADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTE 109 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555566668888888888877665544
No 369
>PRK11020 hypothetical protein; Provisional
Probab=42.15 E-value=2e+02 Score=23.82 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 140 EDKISQLNAEIAAYNEVRER-----ELPLVQEVDAKVKELRQTIQDLNKHQV 186 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~-----~~~~i~el~~e~~eLe~~L~~l~~~q~ 186 (432)
..+|.+|...+|.++.+... +.+.+.+...+...|..+|..++..|.
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666555432 345667888888888888888877665
No 370
>PRK04325 hypothetical protein; Provisional
Probab=42.08 E-value=1.5e+02 Score=22.46 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 014013 179 QDLNKHQ 185 (432)
Q Consensus 179 ~~l~~~q 185 (432)
.+|+...
T Consensus 26 e~LN~vv 32 (74)
T PRK04325 26 DGLNATV 32 (74)
T ss_pred HHHHHHH
Confidence 3333333
No 371
>PLN02320 seryl-tRNA synthetase
Probab=42.05 E-value=2.6e+02 Score=29.57 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAY 153 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~ 153 (432)
+..+.+++..+..+++.++.+...+
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~ 119 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAV 119 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 372
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.96 E-value=3.9e+02 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNK 183 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~ 183 (432)
.+...++.++..+..
T Consensus 81 ~~l~~l~~~~~~l~a 95 (423)
T TIGR01843 81 ADAAELESQVLRLEA 95 (423)
T ss_pred hHHHHHHHHHHHHHH
Confidence 333444444444333
No 373
>PRK15396 murein lipoprotein; Provisional
Probab=40.90 E-value=1.7e+02 Score=22.61 Aligned_cols=47 Identities=11% Similarity=0.360 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
+.+++|..+++.|..+...+......++......+.+-.....+|..
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn 71 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDN 71 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666665555555555555544
No 374
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.72 E-value=2.2e+02 Score=23.88 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=7.5
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 014013 202 LDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 202 l~~~l~~~~~~l~~l~~e~ 220 (432)
|..+++.++..+..+...-
T Consensus 75 L~er~E~Le~ri~tLekQe 93 (119)
T COG1382 75 LEERKETLELRIKTLEKQE 93 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444333333
No 375
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=40.61 E-value=1.3e+02 Score=26.47 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHhhcCcCCCChhhc------CCCChh---HHHHHHHHHH-HHhccCCCCchhh-hcHHHhhcCCC-
Q 014013 4 FDYPRLSATEIVTILTETEIAVITENDL------KNPNPD---FVSDLYTRLL-IFLDVLHEDDQGQ-LDFAALEQLEN- 71 (432)
Q Consensus 4 ~~fP~l~~~eIv~~L~~~~~~~~t~~dl------~kPt~~---~v~~ly~~~l-~~~~~~~~~~~~~-~~~~~~~~~~~- 71 (432)
|++|.|+..|+..++. +|.+|+ ..|..- .|+--|-+.. .|++.. .++... +.+ ....+..
T Consensus 11 ~~~P~l~~~el~~~ft------Ls~~d~~~i~~~r~~~~rlgfalqL~~fr~~g~f~~~~-~~~p~~~i~~-va~ql~~~ 82 (166)
T PF13700_consen 11 YSLPRLSEEELIRYFT------LSPEDLELINSRRGPANRLGFALQLGYFRALGRFPDDP-EDIPKADIEY-VAKQLGLP 82 (166)
T ss_pred cCCCCCCHHHHHHHhC------CCHHHHHHHhcccCCccchhHHHHHHHHhccccccccc-ccCCHHHHHH-HHHHhCCc
Confidence 7899999999998864 566655 123221 2333333333 333211 111111 111 2222322
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccc
Q 014013 72 -PDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKD 105 (432)
Q Consensus 72 -pe~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~D 105 (432)
+++-.-+..--.-+++...++.-+|+. .|+-.|
T Consensus 83 ~~~~~~y~~r~~T~~~h~~~I~~~lg~r-~~~~~~ 116 (166)
T PF13700_consen 83 PSDLSSYAQRSRTRYRHRAEIREYLGYR-PFDESD 116 (166)
T ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhCcc-cCchhH
Confidence 221112223467788999999999998 888766
No 376
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.11 E-value=1.8e+02 Score=27.80 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
++...++.|+.++..|+...+.+.-+++.++++..++-..|.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333
No 377
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=40.04 E-value=2.2e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSL-RTTLNKLKEKT 199 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l-~~~~~~~k~e~ 199 (432)
|++-.+++|+.+|..++..|... ..++++|++--
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly 38 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLY 38 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHH
Confidence 34455677777777777655555 66666666543
No 378
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=39.75 E-value=4.1e+02 Score=26.81 Aligned_cols=70 Identities=11% Similarity=0.279 Sum_probs=36.6
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHH
Q 014013 353 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKE-----------------SGAAKLQELASKAEEIVEKFQQ 415 (432)
Q Consensus 353 ~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~-----------------~~e~ei~~~~~~~~~L~~~i~~ 415 (432)
++.+.++|...++|+..++-.++.+..-++.-|.++..... +.++++..+..-|..+.+.|..
T Consensus 155 ~er~~~~y~~~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~e 234 (464)
T KOG4637|consen 155 YERLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRREQGSQGNSEKEIGRIANNYDKLKSRIRE 234 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCchHHHHHHHHhhhHHHHHHHHH
Confidence 44444555555555555555555444444433333322211 3456667777777777776666
Q ss_pred HHHHHhc
Q 014013 416 YTNSIGT 422 (432)
Q Consensus 416 Y~~~m~~ 422 (432)
.++++..
T Consensus 235 i~~sl~~ 241 (464)
T KOG4637|consen 235 IHDSLTR 241 (464)
T ss_pred HHHHHHh
Confidence 6665543
No 379
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=39.59 E-value=93 Score=22.63 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=24.4
Q ss_pred cccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 103 LKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 103 ~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
+.+++.|++-|+- +.|.....+|-..-.+|..+..+...|+.+..+++
T Consensus 6 ~~~vip~~~~~~W----~~L~~~l~rY~~vL~~R~~l~~e~~~L~~qN~eLr 53 (60)
T PF14775_consen 6 LANVIPDEKIRLW----DALENFLKRYNKVLLDRAALIQEKESLEQQNEELR 53 (60)
T ss_pred HhhcCChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555 55555445555555566655555554444444443
No 380
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=39.59 E-value=4.4e+02 Score=27.12 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=30.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcch
Q 014013 70 ENPDLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE 115 (432)
Q Consensus 70 ~~pe~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~ 115 (432)
.-|.....-+++.+|+.+|+.+|.+.....=|+-.-=++|.-.=|.
T Consensus 249 lspt~q~s~r~l~al~~h~q~lf~~v~l~~~~~p~~at~P~lp~t~ 294 (514)
T KOG4370|consen 249 LSPTEQESKRGLQALGLHLQTLFEMVRLMVCFSPLHATRPFLPITV 294 (514)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhheeeeeeccccccCCCCCCch
Confidence 4466667778899999999999998655434444344456543333
No 381
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=39.50 E-value=5.7e+02 Score=28.36 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 014013 119 MNLLRPIAEDLTRLDEQR 136 (432)
Q Consensus 119 ~~~ls~iin~~~~f~eer 136 (432)
...-..|.|.++..+-+.
T Consensus 166 P~~Aa~iaN~la~~Y~~~ 183 (754)
T TIGR01005 166 PKLAAAIPDAIAAAYIAG 183 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467788899888887664
No 382
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=39.34 E-value=4.4e+02 Score=27.01 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKV 374 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~i 374 (432)
+..-+..++..+++++..+.+-+..+..+ +.++++|-...+.+.++.++..
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aqk~~~ek-------~~qy~~Ee~~~reen~rlQrkL 301 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQKSYQEK-------LMQYRAEEVDHREENERLQRKL 301 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHH
Confidence 33445566677777777766666665533 3344444444444554444433
No 383
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=39.23 E-value=1.7e+02 Score=22.25 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhHhhH
Q 014013 347 EDATRAFENVKLEMESKRQ 365 (432)
Q Consensus 347 ~e~~~~~~~l~~e~~~~~~ 365 (432)
..++.++..|...+..+..
T Consensus 76 ~~i~~~~~~l~~~w~~l~~ 94 (105)
T PF00435_consen 76 DEIQEKLEELNQRWEALCE 94 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 384
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.20 E-value=3.1e+02 Score=30.76 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=14.5
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCc
Q 014013 1 MSKFDYPRLSATEIVTILTETEI 23 (432)
Q Consensus 1 ms~~~fP~l~~~eIv~~L~~~~~ 23 (432)
|...++-.|..+.|...|..+-.
T Consensus 1 m~~~~l~~Lef~~i~~~l~~~~~ 23 (771)
T TIGR01069 1 MREKDLIKLEFDKVKENLLKQTF 23 (771)
T ss_pred CChhhHHhcCHHHHHHHHHHHcC
Confidence 44444556777778777776533
No 385
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.13 E-value=1.8e+02 Score=22.58 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q 014013 195 LKEKTGALDEKFSQTEFDLVQSVQQ 219 (432)
Q Consensus 195 ~k~e~~el~~~l~~~~~~l~~l~~e 219 (432)
|..+...+..++..+...+..++..
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R 86 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKR 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 386
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=38.92 E-value=2.5e+02 Score=23.96 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 123 s~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
..+++.|..+|.+...+..++..|+...+++..-+
T Consensus 18 ~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi 52 (140)
T KOG4098|consen 18 QAVVAKYNALRSELQQIASKITDLEMDLREHKLVI 52 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46778899999999999999999999888886644
No 387
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=38.86 E-value=4.7e+02 Score=27.15 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHH
Q 014013 376 AVVTEVDAITSKTKFVKESGAA-----KLQELASKAEEIVEKFQQYT 417 (432)
Q Consensus 376 ~~~~~i~~ie~~~~~~k~~~e~-----ei~~~~~~~~~L~~~i~~Y~ 417 (432)
....+|..|+.+|+..+...-. -......+|..|.-....--
T Consensus 318 ~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe 364 (434)
T PRK15178 318 RLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAK 364 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443321 23445566666665554433
No 388
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=38.82 E-value=3.4e+02 Score=25.56 Aligned_cols=55 Identities=25% Similarity=0.312 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~ 220 (432)
+++.++.+|..+-..|......|+.....+-.++.++...++.+...+.++++.+
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~ 148 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQ 148 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHH
Confidence 3333334444444444444444444445555555555555555555555554443
No 389
>PHA03041 virion core protein; Provisional
Probab=38.59 E-value=1.2e+02 Score=26.04 Aligned_cols=57 Identities=9% Similarity=0.314 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 014013 370 RQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPV 426 (432)
Q Consensus 370 ~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~ 426 (432)
+...++.+.++.+.|..++..++...+.=|..|-.....=..+|+..|+++.++++-
T Consensus 91 ~~~s~~ei~kE~esIKdeT~sLQ~es~~LV~DIs~AkdtTfdAiNaiM~dL~kkfQ~ 147 (153)
T PHA03041 91 RSISIEEIIKELESIKDETSSLQNESDSLVDDISTAKDTTFDAINAIMKDLKKKFQL 147 (153)
T ss_pred hhccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHhcc
Confidence 445567888889999999999999999999999999999999999999999998763
No 390
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=38.53 E-value=1.1e+02 Score=33.83 Aligned_cols=90 Identities=22% Similarity=0.374 Sum_probs=56.3
Q ss_pred CCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hcchhHHHHHHHHH
Q 014013 101 FTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRE--------RELPLVQEVDAKVK 172 (432)
Q Consensus 101 Ft~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~--------~~~~~i~el~~e~~ 172 (432)
..++|| +|+-.-+. +.+ +|+..|.. +++.++.=++.+|........ .....+.++++...
T Consensus 35 vqFrDL-N~~v~afQ----R~f---v~evrRcd----emeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~ 102 (829)
T KOG2189|consen 35 VQFRDL-NPDVSAFQ----RKF---VNEVRRCD----EMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLE 102 (829)
T ss_pred eEeeeC-CCccCHHH----HHH---HHHHHHHH----HHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHH
Confidence 567887 77765555 433 34444442 233334444444433222111 11235688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 173 ELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 173 eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
++++++.+++....+++..+.++++-+.-+
T Consensus 103 klE~el~eln~n~~~L~~n~~eL~E~~~vl 132 (829)
T KOG2189|consen 103 KLESELRELNANKEALKANYNELLELKYVL 132 (829)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888887766444
No 391
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=38.53 E-value=1.9e+02 Score=22.66 Aligned_cols=50 Identities=16% Similarity=0.347 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEF 211 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~ 211 (432)
+.+++|..+++.|..+...+......++......+.+-.+..++|....|
T Consensus 24 ~kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~~ 73 (85)
T PRK09973 24 QKVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQDY 73 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 45666666666666666666666666677777777777777777766554
No 392
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.42 E-value=2.5e+02 Score=23.82 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhh
Q 014013 320 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEME 361 (432)
Q Consensus 320 ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~ 361 (432)
++..+..+++.|...-.+.-.+.++..+.+.+.+..+++-+.
T Consensus 28 ~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~ 69 (126)
T PF09403_consen 28 ELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYA 69 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333444444444455544444443
No 393
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=38.40 E-value=2.8e+02 Score=26.95 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013 366 DLEARQKKVEAVVTEVDAITSKTKFVKESGA 396 (432)
Q Consensus 366 e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e 396 (432)
+.+...++.+.+..++..++.+|+-+|..+.
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555677777777777778776654
No 394
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.37 E-value=1.4e+02 Score=28.51 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQ 185 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q 185 (432)
.+|.-|...-+|||.+..++++++......+..++ .+++.+.++|-.|-.+++=+..-.
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~-------~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLR-------REVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCc
Confidence 57777778889999998888888877777655554 456778888888888887665443
No 395
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=38.09 E-value=2.2e+02 Score=23.16 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
+.+.+..|+.-..+=......|...+.........+...++.+.|.-..+...++.|+..+.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555555555555555555555555555555555444443
No 396
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=38.08 E-value=2.1e+02 Score=22.83 Aligned_cols=16 Identities=6% Similarity=-0.014 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhhh
Q 014013 213 LVQSVQQNADLRSKIV 228 (432)
Q Consensus 213 l~~l~~e~~~L~~~iv 228 (432)
...+..+...|...+.
T Consensus 54 ~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 54 KDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444443333
No 397
>PF14182 YgaB: YgaB-like protein
Probab=38.04 E-value=1.9e+02 Score=22.33 Aligned_cols=58 Identities=10% Similarity=0.313 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNEVRE-----RELPLVQEVDAKVKELRQTIQDLNKHQV 186 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~~-----~~~~~i~el~~e~~eLe~~L~~l~~~q~ 186 (432)
|.++-.+.+...+++--|+++++.+..--. ..++....+..++..++.+|.++.+...
T Consensus 2 F~~LV~eQm~tMD~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 2 FDKLVSEQMKTMDKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888888888888887754211 1223334445555555555555554444
No 398
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.64 E-value=1.5e+02 Score=21.26 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 374 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 417 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~ 417 (432)
|..+..+++.|..+++.++.+...-..++...-.+|-..+..|.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY~ 55 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSYK 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 34445556666666666655555555555555666666666663
No 399
>PLN02678 seryl-tRNA synthetase
Probab=37.31 E-value=2e+02 Score=29.89 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTL 192 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~ 192 (432)
-++..+..++..++..++..++.+...+
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 400
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=37.12 E-value=72 Score=21.70 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=31.0
Q ss_pred CCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH-HHh
Q 014013 5 DYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFL 50 (432)
Q Consensus 5 ~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l-~~~ 50 (432)
.|..|+..|+..-|..+|++ . =|=.+.-+.+|++=| ..+
T Consensus 2 d~~~LSd~eL~~~L~~~G~~-~------gPIt~sTR~vy~kkL~~~~ 41 (44)
T smart00540 2 DVDRLSDAELRAELKQYGLP-P------GPITDTTRKLYEKKLRKLR 41 (44)
T ss_pred chhHcCHHHHHHHHHHcCCC-C------CCcCcchHHHHHHHHHHHH
Confidence 46789999999999999995 2 255677788999888 554
No 401
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=36.96 E-value=4.4e+02 Score=26.27 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHhhcCcCCCChhhcC-----CCChhHHHHH
Q 014013 8 RLSATEIVTILTETEIAVITENDLK-----NPNPDFVSDL 42 (432)
Q Consensus 8 ~l~~~eIv~~L~~~~~~~~t~~dl~-----kPt~~~v~~l 42 (432)
.+++.+|+..|..++...++.+.|. =||++-+..+
T Consensus 92 ~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l 131 (370)
T PF02181_consen 92 KLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEAL 131 (370)
T ss_dssp TS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHH
T ss_pred CCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHH
Confidence 5799999999999987567877773 6888888877
No 402
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.81 E-value=5.2e+02 Score=27.13 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=11.1
Q ss_pred hhHHHHHHHH----HHHHHHHHHHHHH
Q 014013 394 SGAAKLQELA----SKAEEIVEKFQQY 416 (432)
Q Consensus 394 ~~e~ei~~~~----~~~~~L~~~i~~Y 416 (432)
.|...|..++ .+|..|.++|+.-
T Consensus 151 ~f~~~v~~~~~~~~~~~~~L~~qi~~L 177 (475)
T PRK10361 151 GFRRQVQDSFGKEAQERHTLAHEIRNL 177 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 3455666665543
No 403
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.60 E-value=3.3e+02 Score=27.07 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 203 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~ 203 (432)
..+....+++.++.+.|..-...+..-+.+..++.
T Consensus 18 ethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~ 52 (330)
T PF07851_consen 18 ETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELK 52 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433333333333
No 404
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=36.53 E-value=2e+02 Score=22.22 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
.+..-.++...++..+-+|...+..+...| .+++..|...|+.
T Consensus 33 ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~Y---EeEI~rLr~eLe~ 75 (79)
T PF08581_consen 33 KINSQIQEMQQIRQKVYELEQAHRKMKQQY---EEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 344444566666777777777666666554 4455555555443
No 405
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=36.25 E-value=12 Score=39.20 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013 321 LIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 321 l~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~ 391 (432)
+.+++.+++.=++++.+.+.+....|..+..++-...+|+ ++|..+.+.-++.+.+-|++=+..|+.+
T Consensus 410 l~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeEL---rre~~~m~~~~~~kqrii~aQ~~~i~~L 477 (495)
T PF12004_consen 410 LLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEEL---RREHAEMQAVLDHKQRIIDAQEKRIAAL 477 (495)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhh---hhhHHHHhcccccchHHHHHhhhhcccc
Confidence 5567777777776677766666666666665553333332 3333333444444444444444444444
No 406
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.14 E-value=1.4e+02 Score=20.35 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 014013 188 LRTTLNKLKEK 198 (432)
Q Consensus 188 l~~~~~~~k~e 198 (432)
|...++.++.+
T Consensus 10 LK~~yd~Lk~~ 20 (45)
T PF02183_consen 10 LKASYDSLKAE 20 (45)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 407
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.79 E-value=3e+02 Score=23.99 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
..+ |..+-.....++..+......++.+.
T Consensus 19 ~~~-~e~ll~~~~~LE~qL~~~~~~l~lLq 47 (160)
T PF13094_consen 19 SFD-YEQLLDRKRALERQLAANLHQLELLQ 47 (160)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 55555555555444444334333333
No 408
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.47 E-value=5.7e+02 Score=27.13 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=9.9
Q ss_pred hhcCCCch----hHHHHHHHHHHHH
Q 014013 66 LEQLENPD----LHVRSVQIMKLYS 86 (432)
Q Consensus 66 ~~~~~~pe----~~~~s~~~l~~~~ 86 (432)
..-++||+ +.++-.-+-.|++
T Consensus 344 ~tlLe~~~~R~~fldeL~EL~aFL~ 368 (507)
T PF05600_consen 344 LTLLENPETRNQFLDELLELEAFLK 368 (507)
T ss_pred hhhcCCHhHHHHHHHHHHHHHHHHH
Confidence 33446664 2344444555554
No 409
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=35.17 E-value=23 Score=28.21 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=27.4
Q ss_pred HHHHH-cCCCCCCCccccc-CCCCCcchhHhhhhHHHHHHHH
Q 014013 90 EVVTT-VNCPMNFTLKDLI-RPDATRTEDTKMNLLRPIAEDL 129 (432)
Q Consensus 90 ~~~~~-~gv~~DFt~~Dl~-~P~~~R~~~~~~~~ls~iin~~ 129 (432)
+++.. +|++..++..||+ .|++..+. ..+..+.+.|
T Consensus 70 ~~~~~~lg~~~~~~~~dl~~~~~~~~vl----~~l~~l~~~~ 107 (108)
T PF00307_consen 70 EAAEKKLGIPPLLSPEDLVEKGDEKSVL----SFLWQLFRYF 107 (108)
T ss_dssp HHHHHHTTSSCTS-HHHHHSTT-HHHHH----HHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHCcCHHHHH----HHHHHHHHHH
Confidence 46666 8999778999999 99888888 8888887654
No 410
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=35.12 E-value=4.5e+02 Score=25.84 Aligned_cols=12 Identities=8% Similarity=-0.000 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 014013 405 KAEEIVEKFQQY 416 (432)
Q Consensus 405 ~~~~L~~~i~~Y 416 (432)
+|..|..-.+..
T Consensus 198 ef~~l~~l~n~~ 209 (301)
T PF06120_consen 198 EFNRLMGLGNQL 209 (301)
T ss_pred HHHHHHHHHHHH
Confidence 355554443333
No 411
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.91 E-value=2.4e+02 Score=29.08 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTL 192 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~ 192 (432)
.+..+..++..++..|+..++.+..++
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444433333
No 412
>PRK12704 phosphodiesterase; Provisional
Probab=34.35 E-value=5.9e+02 Score=27.05 Aligned_cols=13 Identities=8% Similarity=0.110 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHh
Q 014013 409 IVEKFQQYTNSIG 421 (432)
Q Consensus 409 L~~~i~~Y~~~m~ 421 (432)
|...+..|-.++.
T Consensus 194 ~~~a~qr~a~~~~ 206 (520)
T PRK12704 194 LAQAIQRCAADHV 206 (520)
T ss_pred HHHHHHhhcchhh
Confidence 5666666655543
No 413
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.31 E-value=2.7e+02 Score=23.03 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=6.0
Q ss_pred CCCcccccCCCCCc
Q 014013 100 NFTLKDLIRPDATR 113 (432)
Q Consensus 100 DFt~~Dl~~P~~~R 113 (432)
.||+.||......+
T Consensus 38 ~vtf~~l~~e~~~~ 51 (118)
T PF13815_consen 38 NVTFCDLENEDCQH 51 (118)
T ss_pred hcceeccChhhccC
Confidence 34444444443333
No 414
>PF14282 FlxA: FlxA-like protein
Probab=34.31 E-value=2.5e+02 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 014013 198 KTGALDEKFSQTEFDLVQS 216 (432)
Q Consensus 198 e~~el~~~l~~~~~~l~~l 216 (432)
....|...|..+...|..+
T Consensus 52 q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344443333333
No 415
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=34.29 E-value=28 Score=32.79 Aligned_cols=41 Identities=29% Similarity=0.484 Sum_probs=27.9
Q ss_pred cCCCChhHHHHHHHHHHHHhccCCCCchhhhcHHHhhcCCCchh
Q 014013 31 LKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDL 74 (432)
Q Consensus 31 l~kPt~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~~~~~pe~ 74 (432)
|.||+|+-++.||-.=|..+|+.. ..+.++| .-++-++|.+
T Consensus 84 ilKPsP~NiQeLYL~SL~~lGid~--~~HDIRF-VEDnWE~PTl 124 (298)
T COG0752 84 IIKPSPDNIQELYLGSLEALGIDP--LEHDIRF-VEDNWENPTL 124 (298)
T ss_pred EecCCCccHHHHHHHHHHHcCCCh--hhcceee-eccCCCCCcc
Confidence 579999999999999999999742 2333444 2233345533
No 416
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.63 E-value=64 Score=31.81 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=41.1
Q ss_pred CChhhcCCCChhHHHHHHHHHHHHhccCCCCchhhhcHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHcCCC
Q 014013 26 ITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCP 98 (432)
Q Consensus 26 ~t~~dl~kPt~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~~l~~~~~~~~~~~~~gv~ 98 (432)
++..++...+-+.|..+|..+|..+....... ....++...-...++.+|..|+.|+..||..
T Consensus 108 ~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~----------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 108 FRQSNFASFTVSDVRDVYEKCLRALSRRRSGR----------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHhhccc----------cccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 45667778888889999999994443221111 0011222333445689999999999999986
No 417
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.58 E-value=3.7e+02 Score=24.44 Aligned_cols=59 Identities=8% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
.......+..|+.........+.....--......|.+....+...+..++.|..++..
T Consensus 104 a~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~ 162 (188)
T PF05335_consen 104 AQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQA 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444455555555444444433
No 418
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=33.32 E-value=3.8e+02 Score=24.53 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHH-HHHHHH
Q 014013 196 KEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIR-EEARDA 251 (432)
Q Consensus 196 k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l-~~l~~~ 251 (432)
..+--+|.++|..-+..+..+.+.+..=...+..-|..++..=..|+..+ .+|+++
T Consensus 4 t~eY~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~ElI~ELkqs 60 (196)
T PF15272_consen 4 TSEYLELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQELINELKQS 60 (196)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666776666666666666666666666666665544 445544
No 419
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=33.19 E-value=4.4e+02 Score=25.14 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 375 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie 375 (432)
..+..+|+..-++..-|+-.+..++.-.. -+..|+.|-..++++++.+.++.+
T Consensus 136 eDfeqrLnqAIErnAfLESELdEke~lle--------svqRLkdEardlrqelavr~kq~E 188 (333)
T KOG1853|consen 136 EDFEQRLNQAIERNAFLESELDEKEVLLE--------SVQRLKDEARDLRQELAVRTKQTE 188 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566666666666666666555433222 345566666666667666555433
No 420
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.63 E-value=3.2e+02 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLN 193 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~ 193 (432)
+-++..+..++..++..|+..+..+...+.
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555444443
No 421
>PF13166 AAA_13: AAA domain
Probab=32.17 E-value=7.1e+02 Score=27.27 Aligned_cols=8 Identities=0% Similarity=0.115 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014013 412 KFQQYTNS 419 (432)
Q Consensus 412 ~i~~Y~~~ 419 (432)
.|+.+...
T Consensus 463 ~iN~~L~~ 470 (712)
T PF13166_consen 463 RINEELKR 470 (712)
T ss_pred HHHHHHHH
Confidence 33333333
No 422
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=32.00 E-value=1.6e+02 Score=29.83 Aligned_cols=15 Identities=0% Similarity=0.138 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q 014013 346 SEDATRAFENVKLEM 360 (432)
Q Consensus 346 ~~e~~~~~~~l~~e~ 360 (432)
+.++..++..+...+
T Consensus 146 i~e~Eeris~lEd~~ 160 (370)
T PF02994_consen 146 IDELEERISELEDRI 160 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHH
Confidence 333333333333333
No 423
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.96 E-value=3.6e+02 Score=23.78 Aligned_cols=16 Identities=0% Similarity=-0.014 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHcCCC
Q 014013 83 KLYSMVKEVVTTVNCP 98 (432)
Q Consensus 83 ~~~~~~~~~~~~~gv~ 98 (432)
.+|+-+.+++..+|.+
T Consensus 7 ~Ig~EfE~lId~~G~e 22 (158)
T PF09744_consen 7 SIGKEFERLIDRYGEE 22 (158)
T ss_pred HHHHHHHHHHHHhChh
Confidence 3566677888888864
No 424
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=31.62 E-value=70 Score=30.70 Aligned_cols=84 Identities=20% Similarity=0.419 Sum_probs=49.3
Q ss_pred CCCCCCHHHHHHHHhhcCcCCCChhhcCCCChhHHHHHHHHHH-HHhccCCC---CchhhhcH------HH-hhcCCCch
Q 014013 5 DYPRLSATEIVTILTETEIAVITENDLKNPNPDFVSDLYTRLL-IFLDVLHE---DDQGQLDF------AA-LEQLENPD 73 (432)
Q Consensus 5 ~fP~l~~~eIv~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l-~~~~~~~~---~~~~~~~~------~~-~~~~~~pe 73 (432)
-||.++.+|++..|..-.-+ .+..+..+....+|.+|+ .+++.... .+...+.. +. ++.+.++.
T Consensus 2 ~Fp~Ys~~e~~~IL~~~~~~-----~~~~~~~~~~~~ly~~f~~~i~~~~~~~~~rdl~eL~~i~~~lwp~y~~Pi~~g~ 76 (271)
T PF14630_consen 2 YFPPYSKDELLEILSLDQPS-----ELPDLPDDIDRELYNQFVNLILDSFYSYTGRDLNELRHIAAKLWPKYVEPILEGE 76 (271)
T ss_pred cCCCCCHHHHHHHHhhCCCc-----ccccccchHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhhhcccC
Confidence 49999999999999975432 112566788888998888 66653211 11111111 11 12222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHc
Q 014013 74 LHVRSVQIMKLYSMVKEVVTTV 95 (432)
Q Consensus 74 ~~~~s~~~l~~~~~~~~~~~~~ 95 (432)
. +......+|+....+|...
T Consensus 77 ~--~~~~~~~L~~~~~~~~~~~ 96 (271)
T PF14630_consen 77 I--DPSDFSKLYRAIRPLFRSA 96 (271)
T ss_pred C--ChhHHHHHHHHHHHHHHHH
Confidence 2 2344577888877777774
No 425
>PRK10698 phage shock protein PspA; Provisional
Probab=31.38 E-value=4.3e+02 Score=24.55 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014013 317 LEAKLIERQGKVEQLDEL 334 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~ 334 (432)
+++++...+.....|..+
T Consensus 57 ~er~~~~~~~~~~~~e~k 74 (222)
T PRK10698 57 LTRRIEQAEAQQVEWQEK 74 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 426
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=31.03 E-value=5.1e+02 Score=29.73 Aligned_cols=54 Identities=15% Similarity=-0.015 Sum_probs=35.9
Q ss_pred HHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHcCCC
Q 014013 39 VSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKEVVTTVNCP 98 (432)
Q Consensus 39 v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~~l~~~~~~~~~~~~~gv~ 98 (432)
=-.+.+|+| .-+|+...++.-...-|+. |.|++++.-++.--..+++....-|+
T Consensus 304 rDSVLTwLLkD~LGGNsrTvMiatvSPaA------dnyeeTlStLRYadrAkrIvN~avvN 358 (1714)
T KOG0241|consen 304 RDSVLTWLLKDNLGGNSRTVMIATVSPAA------DNYEETLSTLRYADRAKRIVNHAVVN 358 (1714)
T ss_pred hhHHHHHHHHhhcCCCceeEEEEEecccc------cchHHHHHHHHHHHHHHHhhcccccc
Confidence 346888999 8888754443211111222 67899999998888888887776665
No 427
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.99 E-value=1.4e+02 Score=28.99 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDL 181 (432)
Q Consensus 166 el~~e~~eLe~~L~~l 181 (432)
++.+||++|+.++.++
T Consensus 70 ~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 70 NLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555544
No 428
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.80 E-value=4.3e+02 Score=24.29 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEV 156 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k 156 (432)
..+..+..+|..-+..-..+.++|+.++..-+.+...
T Consensus 64 ~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~E 100 (201)
T PF11172_consen 64 DKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDE 100 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565666666666666666666666655555443
No 429
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=30.79 E-value=5.2e+02 Score=25.24 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014013 261 EKTTTLEVYQKTLKKMSKQSA 281 (432)
Q Consensus 261 ~~~~~l~~~~k~~~dv~~~~~ 281 (432)
+.+..++-|..-+.|+..||.
T Consensus 132 V~td~F~E~k~rLQ~L~scIt 152 (324)
T PF12126_consen 132 VRTDGFDEFKARLQDLVSCIT 152 (324)
T ss_pred eecccHHHHHHHHHHHHHHHh
Confidence 455667777776777777775
No 430
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=30.61 E-value=36 Score=36.95 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=10.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 389 KFVKESGAAKLQELASKAEEIVEKFQQYT 417 (432)
Q Consensus 389 ~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~ 417 (432)
.++-+.|+.||..+...|..-...+..|-
T Consensus 322 E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~ 350 (619)
T PF03999_consen 322 EELLELHEEEIERLKEEYESRKPILELVE 350 (619)
T ss_dssp -------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888777666665553
No 431
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=30.50 E-value=1e+02 Score=31.19 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHH
Q 014013 174 LRQTIQDLNKHQ 185 (432)
Q Consensus 174 Le~~L~~l~~~q 185 (432)
+..++..+++.+
T Consensus 110 lkkEie~IKk~q 121 (370)
T PF02994_consen 110 LKKEIENIKKNQ 121 (370)
T ss_dssp --------H---
T ss_pred HHHHHHHHhhhH
Confidence 333344343333
No 432
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=30.48 E-value=4.9e+02 Score=24.93 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHH
Q 014013 193 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 250 (432)
Q Consensus 193 ~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~ 250 (432)
++.....+.|..++..++..+..+..++.-|..|--..------.|..|...+..++.
T Consensus 77 ek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~ 134 (258)
T PF15397_consen 77 EKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKD 134 (258)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666667777777777776653322212245555555544443
No 433
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=30.42 E-value=4.9e+02 Score=24.92 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHh
Q 014013 346 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF----QQYTNSIG 421 (432)
Q Consensus 346 ~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i----~~Y~~~m~ 421 (432)
++-+..+.....++|.......+..+. .-..++..+....+++.+..=.-++.+...|....+.+ ..-.++|.
T Consensus 159 leK~~~k~~ka~~~Y~~~v~~l~~~~~---~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir 235 (269)
T cd07673 159 IEKAAVKSKKATESYKLYVEKYALAKA---DFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFI 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 333445555556666555555554333 34566777777777777777777777877887777766 33456666
Q ss_pred ccccccccc
Q 014013 422 TLLPVTEIE 430 (432)
Q Consensus 422 ~~~~~~~~~ 430 (432)
..|+.|+++
T Consensus 236 ~~le~~d~~ 244 (269)
T cd07673 236 NNMANTTVE 244 (269)
T ss_pred HHHHhCCHH
Confidence 777777653
No 434
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=30.40 E-value=5.3e+02 Score=25.28 Aligned_cols=95 Identities=9% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q 014013 268 VYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSE 347 (432)
Q Consensus 268 ~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~ 347 (432)
++.+-.+|+++|..-|.-+..-+. .++...++..+....+. ..-|..+.+.+-..+.++....-..-..++.+.+
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lk--ee~d~S~k~ik~~F~~l---~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAe 228 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLK--EEMDSSIKKIKQTFAEL---QSCLMDREVALLAEMDKVKAEAMEILDARQKKAE 228 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-----------HHHHHHHhhHhhHHH
Q 014013 348 DATRA-----------FENVKLEMESKRQDL 367 (432)
Q Consensus 348 e~~~~-----------~~~l~~e~~~~~~e~ 367 (432)
++++. +.+|+.++..-.-+|
T Consensus 229 eLkrltd~A~~MsE~Ql~ELRadIK~fvs~r 259 (302)
T PF07139_consen 229 ELKRLTDRASQMSEEQLAELRADIKHFVSER 259 (302)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHhhhh
No 435
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.22 E-value=3.2e+02 Score=22.73 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 121 LLRPIAEDLTRLDEQRSELEDKISQLNAEIAA 152 (432)
Q Consensus 121 ~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~ 152 (432)
.+...++.|..+......+......+..++.+
T Consensus 8 ~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e 39 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLERLLQQKSQIDLELRE 39 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333333333
No 436
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=29.97 E-value=6e+02 Score=25.78 Aligned_cols=115 Identities=20% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARD 250 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~ 250 (432)
.+.+-.+|.+.++.|..+...++.+|.. ++..+.=+...+.+-+-..++|+.++..=-+--+..|..|+. +-..-
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~---~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKq--Elasm 336 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQ---IKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQ--ELASM 336 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHH
Q ss_pred HHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 251 AEKLAMQS---FQEKTTTLEVYQKTLKKMSKQSAQMQAILEQV 290 (432)
Q Consensus 251 ~e~~~l~~---~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~ 290 (432)
.||.+-|+ ++..+..+++|.--...|.-..-+.|..+.++
T Consensus 337 eervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~ 379 (455)
T KOG3850|consen 337 EERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLEG 379 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 437
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=29.72 E-value=4.5e+02 Score=24.81 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
++..+++.++.+|...-..|..+-+.+...+..|..+-.++...+..++++...|+
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 33444444444444444444444444444444444444444444444444443333
No 438
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=29.69 E-value=3.5e+02 Score=22.91 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhcCH
Q 014013 217 VQQNADLRSKIVQSP 231 (432)
Q Consensus 217 ~~e~~~L~~~iv~SP 231 (432)
+.+.+.|-..|...|
T Consensus 114 k~eyd~La~~I~~~p 128 (139)
T PF05615_consen 114 KEEYDALAKKINSQP 128 (139)
T ss_pred HHHHHHHHHHHhcCC
Confidence 335555555555555
No 439
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=29.68 E-value=4.8e+02 Score=24.56 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=63.6
Q ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHH
Q 014013 158 ERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRT 237 (432)
Q Consensus 158 ~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~ 237 (432)
.+.++-..+...++..|+..|..|.+.-..+.....++-.-..+.-.-+..+... + ..+ .|-+.
T Consensus 18 ~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~----E---------~~~---~Ls~a 81 (234)
T cd07665 18 NESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSS----E---------DNT---ALSRA 81 (234)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c---------cch---hHHHH
Confidence 3445556777788888888888888887777776665555544443333322111 0 111 23334
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 238 LEEKKSIREEARDA-EKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVN 291 (432)
Q Consensus 238 i~el~~~l~~l~~~-e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~ 291 (432)
+..+...-..+..+ ++.+.+.+-.....++-|.+++.-|..++.....+-....
T Consensus 82 ls~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~ 136 (234)
T cd07665 82 LSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQ 136 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322222222 3333344445556677777777777777755555444433
No 440
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.30 E-value=7.4e+02 Score=26.61 Aligned_cols=112 Identities=15% Similarity=0.222 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 210 EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 289 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~ 289 (432)
...+...++.++.|+..-+.+|..+.+..+++.....+.++ ..+.+..+..++......+..--.+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~--------------~~~~i~~~~~~l~~~~~~~~~~~~~ 255 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKA--------------DKQKIKSAKNDLQNDKKQLKADLAE 255 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55666667777777777788898888777766554433221 1111122222333333333322222
Q ss_pred HHHHHHHHHHHHHHHHhhc--chH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 290 VNSAKSIEKDYKSLKARLN--DDV---VLDKSLEAKLIERQGKVEQLDELQQQ 337 (432)
Q Consensus 290 ~~~~ke~e~~~~~~k~~l~--~~~---~~~~~l~~ql~~~~~k~~~l~~~~~~ 337 (432)
+.+.. +.+.++++..+. .-+ +-.-.+...+..|-.+.-.|-++..-
T Consensus 256 lk~ap--~~D~~~L~~~~~~~~~~~~~~~~~L~g~~i~~~~~~~~~~y~~~~p 306 (555)
T TIGR03545 256 LKKAP--QNDLKRLENKYAIKSGDLKNFAVDLFGPEIRKYLQKFLKYYDQAEP 306 (555)
T ss_pred HHhcc--HhHHHHHHHHhCCCcccHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Confidence 22211 224444443332 111 11334567777887777777766444
No 441
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=29.12 E-value=3.6e+02 Score=22.95 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQL 338 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~ 338 (432)
..++.++..+...+++|+-+..+.
T Consensus 23 ~~l~~~i~~~d~el~QLefq~kr~ 46 (131)
T PF11068_consen 23 QELQEQIQQLDQELQQLEFQGKRM 46 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444443
No 442
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.02 E-value=3.4e+02 Score=24.33 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 014013 76 VRSVQIMKLYSMV 88 (432)
Q Consensus 76 ~~s~~~l~~~~~~ 88 (432)
.+.+..+.|.+++
T Consensus 40 ~~dl~~L~~I~~l 52 (175)
T PRK13182 40 EEDLQLLEYVKSQ 52 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555433
No 443
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=28.87 E-value=6e+02 Score=25.43 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 172 KELRQTIQDLNKHQVSLRTTLNKL 195 (432)
Q Consensus 172 ~eLe~~L~~l~~~q~~l~~~~~~~ 195 (432)
..+..++..+......+......+
T Consensus 77 ~~~~~~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 77 TDVEADAAELESQVLRLEAEVARL 100 (423)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555554443
No 444
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=28.73 E-value=3.9e+02 Score=23.21 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 014013 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQD 180 (432)
Q Consensus 122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~ 180 (432)
++.+.+.-..+...-......+..|+.++.......+.+...++++....+.+..++.+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555534344333334455566666666666555555555555554444444444443
No 445
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=28.48 E-value=5.2e+02 Score=24.51 Aligned_cols=29 Identities=10% Similarity=-0.104 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014013 194 KLKEKTGALDEKFSQTEFDLVQSVQQNAD 222 (432)
Q Consensus 194 ~~k~e~~el~~~l~~~~~~l~~l~~e~~~ 222 (432)
++..+.+-+.....+++..+..++...+.
T Consensus 131 rLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 131 RLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333333333333444444444433333
No 446
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.15 E-value=7.4e+02 Score=26.23 Aligned_cols=42 Identities=12% Similarity=0.132 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhh
Q 014013 323 ERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKR 364 (432)
Q Consensus 323 ~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~ 364 (432)
+|......+-+.+...+.+....+.+.+.+++.|..++..+.
T Consensus 391 e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~vs 432 (531)
T PF15450_consen 391 EWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEVS 432 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344444444444444444444455555555554444444433
No 447
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.98 E-value=5.1e+02 Score=24.28 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 235 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk 235 (432)
++.-.+++++..++...+.++.....++.++.....=|.+....+........+-+..-.+-|+++.
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~~~~Ka~e~~~kRkQdsa~~~e~a~ 152 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQALSKAKENAGKRKQDSADIHEAAS 152 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 3334444444444444444444444444444444444444433333333333333334444454443
No 448
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=27.77 E-value=3.8e+02 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.175 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHcCCC
Q 014013 82 MKLYSMVKEVVTTVNCP 98 (432)
Q Consensus 82 l~~~~~~~~~~~~~gv~ 98 (432)
-.|-+.+.+|+..|...
T Consensus 16 r~l~~l~k~~~~~~~~~ 32 (139)
T PF05615_consen 16 RPLKRLLKRFLKWCNLS 32 (139)
T ss_pred hhHHHHHHHHHHHHhhh
Confidence 45677777777777665
No 449
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.68 E-value=5.8e+02 Score=24.85 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=22.3
Q ss_pred CCHHHHHHHHhhcCcCCCChhhcCC--CChhHHHHHHHHHH
Q 014013 9 LSATEIVTILTETEIAVITENDLKN--PNPDFVSDLYTRLL 47 (432)
Q Consensus 9 l~~~eIv~~L~~~~~~~~t~~dl~k--Pt~~~v~~ly~~~l 47 (432)
|+..||-.++..-|+ ..+|..+ |++..|...|-.++
T Consensus 34 LT~eEI~eAfk~~gi---~~~d~s~~~p~~~~~~~~~p~~~ 71 (300)
T KOG2629|consen 34 LTEEEIQEAFKRDGI---PAQDVSKQIPTANQVVSGGPPLL 71 (300)
T ss_pred CCHHHHHHHHHhcCC---ccccccccCCCcccccCCCchhh
Confidence 678888888888665 3455653 55555544444444
No 450
>PHA02119 hypothetical protein
Probab=27.35 E-value=54 Score=24.47 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCCCCCCHHHHHHHHhhcCcCCCChhhcCC
Q 014013 3 KFDYPRLSATEIVTILTETEIAVITENDLKN 33 (432)
Q Consensus 3 ~~~fP~l~~~eIv~~L~~~~~~~~t~~dl~k 33 (432)
.+-||-.-+.+||.+|+.+|. .+.-+..+|
T Consensus 48 ~~kfp~i~~~divdylr~lgy-~~~~~s~rn 77 (87)
T PHA02119 48 VAKFPAIMPKDIVDYLRSLGY-DAKSDSFRN 77 (87)
T ss_pred cccCCccccHHHHHHHHHccc-hhccccccC
Confidence 357999999999999999998 455444443
No 451
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=27.19 E-value=4.5e+02 Score=25.11 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKL 195 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~ 195 (432)
..|..|++.++++..+|..+.+.|..+-.+++..
T Consensus 68 ~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 68 SDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777776653
No 452
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=26.83 E-value=5.2e+02 Score=24.01 Aligned_cols=12 Identities=0% Similarity=-0.166 Sum_probs=4.4
Q ss_pred hhHHHHHHHHHH
Q 014013 394 SGAAKLQELASK 405 (432)
Q Consensus 394 ~~e~ei~~~~~~ 405 (432)
.++.++..+...
T Consensus 186 ~~~~~~~~~~~~ 197 (236)
T cd07651 186 IWNREWKAALDD 197 (236)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 453
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.80 E-value=7.8e+02 Score=26.07 Aligned_cols=9 Identities=11% Similarity=0.445 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 014013 39 VSDLYTRLL 47 (432)
Q Consensus 39 v~~ly~~~l 47 (432)
...+|.+|.
T Consensus 203 aie~Y~~f~ 211 (507)
T PF05600_consen 203 AIEYYQAFV 211 (507)
T ss_pred HHHHHHHHH
Confidence 334455555
No 454
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=26.77 E-value=3.9e+02 Score=23.93 Aligned_cols=24 Identities=13% Similarity=0.416 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAA 152 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~ 152 (432)
++-|.+.+..+.+++++|+..++.
T Consensus 87 ~~lLe~~~~~l~~ri~eLe~~l~~ 110 (175)
T PRK13182 87 FEQLEAQLNTITRRLDELERQLQQ 110 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555444333
No 455
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=8.1e+02 Score=26.21 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
++...++++...+.+.+..|...+++.+...+.|..++..+
T Consensus 602 Q~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 602 QDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666777777777777777777777777777666654
No 456
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=26.67 E-value=2.9e+02 Score=21.03 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 157 RERELPLVQEVDAKVKELRQTIQDLNKHQVSL-RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 157 ~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l-~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
..+.+..+..|..+|=.|+=+|.-|...+... ......+-.++.+++..+.++..++.+.+..+..+...+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 457
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=26.63 E-value=3.7e+02 Score=22.29 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 142 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLR 189 (432)
Q Consensus 142 ~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~ 189 (432)
++..++..+.+++..+-.+..+++++-..|+.|+..-+.|+.....+.
T Consensus 15 ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 15 EVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred HHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 444555566666655655555667777777766666666655554444
No 458
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=26.39 E-value=4.5e+02 Score=23.12 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=2.2
Q ss_pred HHHHhh
Q 014013 390 FVKESG 395 (432)
Q Consensus 390 ~~k~~~ 395 (432)
..+.++
T Consensus 121 ~~~~~~ 126 (155)
T PRK06569 121 QFRTNK 126 (155)
T ss_pred HHHHhH
Confidence 333333
No 459
>PRK15396 murein lipoprotein; Provisional
Probab=26.18 E-value=3.1e+02 Score=21.16 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 416 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y 416 (432)
.++..+..+++.+...++.++.+.+.-..++...=.+|-..+..|
T Consensus 32 sqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444555555555555665555544445555555555555555
No 460
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=25.76 E-value=6.7e+02 Score=24.91 Aligned_cols=73 Identities=21% Similarity=0.314 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~ 391 (432)
...+.+|...+.++..++..+..++...... ......|..+.......+.....-+..+.++-..+...+..+
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~----~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l 303 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEA----QKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEEL 303 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHH
Confidence 3344444444444444444444443333321 122223333333333333444444444455555555555555
No 461
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.62 E-value=6.3e+02 Score=26.17 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014013 127 EDLTRLDEQRSELEDKISQLNA 148 (432)
Q Consensus 127 n~~~~f~eer~~l~~~i~~l~~ 148 (432)
.++..+.+++..+..+.+.|+.
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~ 50 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQA 50 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 462
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.58 E-value=60 Score=23.74 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCHHHHHHHHhhcCcCCCChhhcCC
Q 014013 9 LSATEIVTILTETEIAVITENDLKN 33 (432)
Q Consensus 9 l~~~eIv~~L~~~~~~~~t~~dl~k 33 (432)
.++.+++...++.|| .||.++|..
T Consensus 25 ~~~e~~~~lA~~~Gf-~ft~~el~~ 48 (64)
T TIGR03798 25 EDPEDRVAIAKEAGF-EFTGEDLKE 48 (64)
T ss_pred CCHHHHHHHHHHcCC-CCCHHHHHH
Confidence 468999999999999 799999964
No 463
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=25.47 E-value=5.6e+02 Score=23.91 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhhhhcCHHHHHHHHHHHH
Q 014013 213 LVQSVQQNADLRSKIVQSPEKLQRTLEEKK 242 (432)
Q Consensus 213 l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~ 242 (432)
+.......+.++..|.+.|..++....++.
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~ 62 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELE 62 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444566666777777777777776666653
No 464
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=25.42 E-value=9.6e+02 Score=26.61 Aligned_cols=261 Identities=11% Similarity=0.144 Sum_probs=0.0
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHH
Q 014013 159 RELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTL 238 (432)
Q Consensus 159 ~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i 238 (432)
+..+..+...-+-.....++..+.-.-..+.........+...-......+...+...........++|++...++-...
T Consensus 4 e~qel~~~~~~e~~~~~~q~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaq 83 (916)
T KOG0249|consen 4 ELQELLEKQQHEQAQSKEQLAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNAQ 83 (916)
T ss_pred chHHHHHHHHHHHhhcccccCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhcc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Q 014013 239 ------EEKKSIREEARDAEKLAMQSFQEKTTTL-EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDV 311 (432)
Q Consensus 239 ------~el~~~l~~l~~~e~~~l~~~q~~~~~l-~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~ 311 (432)
.++...+++-...-...+.-..++...+ ..+.-+...+...+. ...+-+-...+..--+.+........+..
T Consensus 84 re~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al~~aee~~~~~e 162 (916)
T KOG0249|consen 84 RESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAALTKAEEHSGNIE 162 (916)
T ss_pred CCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHHHHHHHhhccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 014013 312 VLDKSLEAKLIERQGKVEQLDELQQQLEK-------ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAI 384 (432)
Q Consensus 312 ~~~~~l~~ql~~~~~k~~~l~~~~~~~~~-------~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~i 384 (432)
--+..+..++.+....+++++...+-... ....+.+.+.++.-+..+..+.+.++.+...+.++..+..-+.+
T Consensus 163 er~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl 242 (916)
T KOG0249|consen 163 ERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKL 242 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 385 TSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 385 e~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
...+..++.....=.......-.++..|+..|....
T Consensus 243 ~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~~~~~e~~ 278 (916)
T KOG0249|consen 243 RTDIEDLRGELDQLRRSSLEKEQELRDHLRTYAERR 278 (916)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHH
No 465
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=25.11 E-value=4.4e+02 Score=22.54 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccccCCCCCcch-------------------------hHhhhhHHHHHHHHHHHHHHHH
Q 014013 83 KLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTE-------------------------DTKMNLLRPIAEDLTRLDEQRS 137 (432)
Q Consensus 83 ~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~-------------------------~~~~~~ls~iin~~~~f~eer~ 137 (432)
..+..+..-+..+.-+ ||+.-++.=.--+.+- ++++.-|...|..|......-.
T Consensus 4 ~~l~~I~~~W~~~~~~-~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~ 82 (142)
T PF04048_consen 4 EVLNEIKDEWPFMLTD-DFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSIS 82 (142)
T ss_pred HHHHHHHHHHHHHhcC-CCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 138 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 186 (432)
Q Consensus 138 ~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~ 186 (432)
...+++..++..+...+.......+.+.++..+....+.-|.-|.....
T Consensus 83 ~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~ 131 (142)
T PF04048_consen 83 ESQERIRELKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEE 131 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.06 E-value=2.3e+02 Score=21.02 Aligned_cols=42 Identities=19% Similarity=0.453 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 204 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~ 204 (432)
...++..+..+++.++..++.....+..+.+.++.....+..
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~ 59 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEK 59 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
No 467
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.90 E-value=3.6e+02 Score=25.52 Aligned_cols=52 Identities=12% Similarity=0.296 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
...+..+..++..++.++.+++..+..+.++++.++.+...=...+......
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~ 117 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKC 117 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 468
>PRK14154 heat shock protein GrpE; Provisional
Probab=24.87 E-value=5.6e+02 Score=23.71 Aligned_cols=90 Identities=6% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS-----QTEFDLVQSVQQNADLRSKIVQSPEKLQR 236 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~-----~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~ 236 (432)
|.++.+..+..+++.++.+++.....+.++++.++.+...-...+. .+-..+..+-...++.-.....+.+.++.
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~ 131 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPASEDPQVKS 131 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccchhHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 237 TLEEKKSIREEARDA 251 (432)
Q Consensus 237 ~i~el~~~l~~l~~~ 251 (432)
.++-+.....++...
T Consensus 132 l~eGvemi~k~l~~v 146 (208)
T PRK14154 132 MRDGMSLTLDLLHNT 146 (208)
T ss_pred HHHHHHHHHHHHHHH
No 469
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=24.86 E-value=7.1e+02 Score=25.75 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 124 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 124 ~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
.+..++..+..+...+...+..++..+..+..... ....-.........+......+.....++..++..++......
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 470
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=24.78 E-value=4.4e+02 Score=22.44 Aligned_cols=64 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 014013 119 MNLLRPIAEDLTRLDE----QRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLN 182 (432)
Q Consensus 119 ~~~ls~iin~~~~f~e----er~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~ 182 (432)
|++|..=-.+|++.+. +|.++.++|..|+.+......-......+|.-|+--++....+...+.
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
No 471
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.78 E-value=3.5e+02 Score=21.30 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 014013 138 ELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSV 217 (432)
Q Consensus 138 ~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~ 217 (432)
.+.+-+.+|...|+.+.......-...... .+++.++..|......|..+++....+.+.|..--.++...+..+-
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 014013 218 QQNADL 223 (432)
Q Consensus 218 ~e~~~L 223 (432)
..|..+
T Consensus 81 e~Ir~v 86 (89)
T PF13747_consen 81 ETIRAV 86 (89)
T ss_pred HHHHHH
No 472
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.70 E-value=5.8e+02 Score=24.85 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKL 234 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~L 234 (432)
+....+|.....++...+..+...+.+++.....-+. ++...|.++...++.+...++++++.|..-+..|
T Consensus 121 e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lv 191 (300)
T KOG2629|consen 121 EADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLV 191 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
No 473
>PLN02320 seryl-tRNA synthetase
Probab=24.66 E-value=5.5e+02 Score=27.18 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLN---------KLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~---------~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
..+-++..+...+..++..++..+..+...+. +++++...+.+++..++..+..+..++..+-..|
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 474
>PRK14160 heat shock protein GrpE; Provisional
Probab=24.53 E-value=4.4e+02 Score=24.44 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 155 EVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 155 ~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
.+.......+..+.+++..++.++.+++.....+.++++.++.+...=...+......
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e 111 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACE 111 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF08598 Sds3: Sds3-like; InterPro: IPR013907 Repression of gene transcription is mediated by histone deacetylases containing repressor-co-repressor complexes, which are recruited to promoters of target genes via interactions with sequence-specific transcription factors. The co-repressor complex contains a core of at least seven proteins []. This entry represents the conserved region found in Sds3, Dep1 and BRMS1-homologue p40 proteins. ; PDB: 2XUS_A.
Probab=24.31 E-value=1.3e+02 Score=27.27 Aligned_cols=106 Identities=8% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHH-HhhHhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHhhHHHH
Q 014013 323 ERQGKVEQLDEL-QQQLEKERNLKSEDATRAFENVKL-EMESKRQDLEARQKKVE-AVVTEVDAITSKTKFVKESGAAKL 399 (432)
Q Consensus 323 ~~~~k~~~l~~~-~~~~~~~~~~~~~e~~~~~~~l~~-e~~~~~~e~~~~~~~ie-~~~~~i~~ie~~~~~~k~~~e~ei 399 (432)
+...++..++.+ ..-+..-...++..+...+..+.. .+.+....+...+...+ .+..--...+.++..++..|+.|.
T Consensus 2 ~~~~~l~~le~~F~~~Rd~lY~e~l~~L~~el~~l~~~t~pe~l~~l~~l~~~rd~~l~~a~~~~~~~l~~i~~~~~~e~ 81 (205)
T PF08598_consen 2 EALDDLAKLEKQFAELRDQLYRERLAQLQQELEQLQEGTHPEYLRRLQDLEERRDERLRVAEILREYRLESIEREYEAER 81 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH---------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHhccccccc
Q 014013 400 QELASKAEEIVEKFQ-QYTNSIGTLLPVTE 428 (432)
Q Consensus 400 ~~~~~~~~~L~~~i~-~Y~~~m~~~~~~~~ 428 (432)
..++.+|......+. .+++++..++-.++
T Consensus 82 ~~a~~e~~~~~~~lre~l~~~l~ek~~~L~ 111 (205)
T PF08598_consen 82 QQAEQEYESEKRELRERLLEELEEKRRRLE 111 (205)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.22 E-value=2.9e+02 Score=20.93 Aligned_cols=43 Identities=12% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh--hcCHHHHHHH
Q 014013 195 LKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI--VQSPEKLQRT 237 (432)
Q Consensus 195 ~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i--v~SPe~Lk~~ 237 (432)
.+.....+...+..+...+..++.+.+.|+..+ ..||+++.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~ 66 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
No 477
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.19 E-value=3.1e+02 Score=20.43 Aligned_cols=51 Identities=8% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 143 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLN 193 (432)
Q Consensus 143 i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~ 193 (432)
+..++..+..+..+.......+..++......+..+..++.....+.....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 478
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=24.14 E-value=6.1e+02 Score=23.90 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhcchh
Q 014013 101 FTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQ-----------------LNAEIAAYNEVRERELPL 163 (432)
Q Consensus 101 Ft~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~-----------------l~~~i~~~~~k~~~~~~~ 163 (432)
||...=|.|...|+. +=....-. +..|..+|..++..-.. +....+.+....+.....
T Consensus 1 ~~~~~G~~~l~~r~~----~g~~~c~e-l~~f~keRa~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~ 75 (242)
T cd07671 1 FTLNTGYEILLQRLL----DGRKMCKD-VEELLKQRAQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNS 75 (242)
T ss_pred CCcccchHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHH
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh-----hcCHHHH
Q 014013 164 V----QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI-----VQSPEKL 234 (432)
Q Consensus 164 i----~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i-----v~SPe~L 234 (432)
- ..+..+...+..=....++....+....+++..-.......+..........=.+........ ..+|..+
T Consensus 76 H~~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~kel 155 (242)
T cd07671 76 HIQLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQS 155 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 235 QRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQ 289 (432)
Q Consensus 235 k~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~ 289 (432)
...-..++.....+...+...-.++......-..+.. ++..+....|+++++
T Consensus 156 eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~---~~~~~~~~~Q~lEee 207 (242)
T cd07671 156 EKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWET---EHILTCEVFQLQEDD 207 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
No 479
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.93 E-value=1e+03 Score=26.54 Aligned_cols=93 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 014013 192 LNKLKEKTGALDEKFSQT-----------EFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQ 260 (432)
Q Consensus 192 ~~~~k~e~~el~~~l~~~-----------~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q 260 (432)
+++++.....-..+|+.+ -.++..++.+..+|++.+..+--+|+..=.++-...+++.++-... .++.
T Consensus 50 ~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~-rnit 128 (800)
T KOG2176|consen 50 MEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS-RNIT 128 (800)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-hhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 261 EKTTTLEVYQKTLKKMSKQSAQMQA 285 (432)
Q Consensus 261 ~~~~~l~~~~k~~~dv~~~~~~l~~ 285 (432)
.-+..+..|..+++=.++|-.++..
T Consensus 129 ~ai~~l~~Cl~vLEl~sK~~e~~s~ 153 (800)
T KOG2176|consen 129 EAIELLTLCLPVLELYSKLQEQMSE 153 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.90 E-value=8.9e+02 Score=25.70 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 014013 293 AKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQK 372 (432)
Q Consensus 293 ~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~ 372 (432)
+.+.+.+.+.....-........ .....+....+...+..++..-.....++..-..++..-.+..+.....++.++.
T Consensus 27 l~~Ae~eAe~i~keA~~eAke~~--ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~ 104 (514)
T TIGR03319 27 LGSAEELAKRIIEEAKKEAETLK--KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEE 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Q 014013 373 KVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE 411 (432)
Q Consensus 373 ~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~ 411 (432)
.++.....+...+.++..+......-+.....+.+++.+
T Consensus 105 ~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 105 NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 481
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=23.84 E-value=3.3e+02 Score=20.72 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 138 ELEDKISQLNAEIAAYNEVRERELPLVQEV-DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 138 ~l~~~i~~l~~~i~~~~~k~~~~~~~i~el-~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
+.+..|+.|+.+.-.++-++--.+...... ...+.++-.+..+|+-...++..++..++.....+...++
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 482
>PRK14153 heat shock protein GrpE; Provisional
Probab=23.69 E-value=5.7e+02 Score=23.37 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCH-HHHHHHH
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSP-EKLQRTL 238 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SP-e~Lk~~i 238 (432)
..+.+..+..++..++.++.+++.....+.++++.++.+. ..+++.+..+-+++- ..|-..+
T Consensus 31 ~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~-----------------~kE~e~~~~~a~~~~~~~LLpv~ 93 (194)
T PRK14153 31 EEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRT-----------------AREMEENRKFVLEQVLLDLLEVT 93 (194)
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014013 239 EEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKK 275 (432)
Q Consensus 239 ~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~d 275 (432)
+.+...+......+... .=++-+.-.+..|.+++.+
T Consensus 94 DnLerAl~~~~~~~~~~-~l~~Gvemi~k~~~~vL~k 129 (194)
T PRK14153 94 DNFERALESARTAEDMN-SIVEGIEMVSKQFFSILEK 129 (194)
T ss_pred hHHHHHHhcccccchHH-HHHHHHHHHHHHHHHHHHH
No 483
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.67 E-value=5.7e+02 Score=23.37 Aligned_cols=167 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH-
Q 014013 216 SVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQS-----AQMQAILEQ- 289 (432)
Q Consensus 216 l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~-----~~l~~~~~~- 289 (432)
++..+..+-..+..-..-|...|.+|...+..+...--..+..-......++.+.....+...-. ..-+++...
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~a 89 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREA 89 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHhHHHHHHHHHHHHHHhhHhhHHH
Q 014013 290 VNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQL--EKERNLKSEDATRAFENVKLEMESKRQDL 367 (432)
Q Consensus 290 ~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~--~~~~~~~~~e~~~~~~~l~~e~~~~~~e~ 367 (432)
+......+..+..++..+......+..|..++..+..++..++.+...+ +.....-.......+..+. ........
T Consensus 90 l~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~--~~~a~~~~ 167 (221)
T PF04012_consen 90 LQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFS--VSSAMDSF 167 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--ccchHHHH
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014013 368 EARQKKVEAVVTEVDAI 384 (432)
Q Consensus 368 ~~~~~~ie~~~~~i~~i 384 (432)
++.+.++......+...
T Consensus 168 er~e~ki~~~ea~a~a~ 184 (221)
T PF04012_consen 168 ERMEEKIEEMEARAEAS 184 (221)
T ss_pred HHHHHHHHHHHHHHHHH
No 484
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.62 E-value=4.2e+02 Score=25.39 Aligned_cols=79 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-----
Q 014013 88 VKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP----- 162 (432)
Q Consensus 88 ~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~----- 162 (432)
|.-+-.-|+++ |-| ..+ ..+..+..+|..+..+...+++++..-+.+++.+.........
T Consensus 163 L~~ae~L~~vY----------P~~-ga~----eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~ 227 (259)
T PF08657_consen 163 LRGAEKLCNVY----------PLP-GAR----EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEES 227 (259)
T ss_pred HHHHHHHHHhC----------CCh-HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccc
Q ss_pred ------------hHHHHHHHHHHHHHHHHHH
Q 014013 163 ------------LVQEVDAKVKELRQTIQDL 181 (432)
Q Consensus 163 ------------~i~el~~e~~eLe~~L~~l 181 (432)
.|+.=+.++.+|+.++.+|
T Consensus 228 ~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 228 EESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhc
No 485
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=23.54 E-value=9e+02 Score=25.65 Aligned_cols=154 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 267 EVYQKTLKKMSKQS--AQMQAILEQVNSAKSIEKDYKSLKARLNDD----VVLDKSLEAKLIERQGKVEQLDELQQQLEK 340 (432)
Q Consensus 267 ~~~~k~~~dv~~~~--~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~----~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~ 340 (432)
..+..+..+....+ ...++-........+.+.++...+..+... ...+...+.+|......+.+-.+.++.+..
T Consensus 25 ~~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~ 104 (514)
T TIGR03319 25 KKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEE 104 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013 341 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAV-------------VTEVDAITSKTKFVKESGAAKLQELASKAE 407 (432)
Q Consensus 341 ~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~-------------~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~ 407 (432)
....+..++..+..++..-......-+.+.....+.. ..--..+..+++.+-..++.+.+.-.....
T Consensus 105 ~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a 184 (514)
T TIGR03319 105 NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKA 184 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H--HHHHHHHHHHHH
Q 014013 408 E--IVEKFQQYTNSI 420 (432)
Q Consensus 408 ~--L~~~i~~Y~~~m 420 (432)
+ |...|..|-.++
T Consensus 185 ~~i~~~aiqr~a~~~ 199 (514)
T TIGR03319 185 KEILATAIQRYAGDH 199 (514)
T ss_pred HHHHHHHHHhccchh
No 486
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.42 E-value=4.5e+02 Score=22.15 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=0.0
Q ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHhcchhHH
Q 014013 116 DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY------------------------------NEVRERELPLVQ 165 (432)
Q Consensus 116 ~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~------------------------------~~k~~~~~~~i~ 165 (432)
..+++.||.+.++...|..+-......+..|....+++ ....+.....+.
T Consensus 19 Qq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~ 98 (131)
T KOG1760|consen 19 QQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIE 98 (131)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDLNKHQ 185 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q 185 (432)
.++++.....+++.+|+...
T Consensus 99 ~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 99 ELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 487
>PRK14140 heat shock protein GrpE; Provisional
Probab=23.25 E-value=4.3e+02 Score=24.08 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
.++++.+++.+++.++.+++.....+.++++.++.+...=...+......
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~ 87 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQ 87 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.19 E-value=3.5e+02 Score=20.73 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 014013 267 EVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKV 328 (432)
Q Consensus 267 ~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~ 328 (432)
.+|..+..||...-.+..+++..+..++.-...+..+..+++.....+..++.+....+.-+
T Consensus 4 NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 4 NILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 489
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.05 E-value=5.6e+02 Score=23.07 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 014013 83 KLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELP 162 (432)
Q Consensus 83 ~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~ 162 (432)
.|...+.+++....+| ++ +.+++|-+.-..++.+++.++..+++..........
T Consensus 54 afnE~MekYLe~lNlP---------------Sr-----------~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~e 107 (189)
T TIGR02132 54 ALNDTTGNYLEQVNVP---------------TK-----------EDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQE 107 (189)
T ss_pred HHHHHHHHHHHhCCCC---------------CH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEE 240 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~e 240 (432)
.--.+..++..+++.|..|...-..+-.-++.-..-..+++.-|.. .++..-+.|+.++....+.+-..+.+
T Consensus 108 q~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (189)
T TIGR02132 108 QAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQK------QIKTQGEQLQAQLLEKQEALAAKLKA 179 (189)
T ss_pred hCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH------HHhhhHHHHHHHHHHHHHHHHHHhhh
No 490
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.72 E-value=6.1e+02 Score=23.37 Aligned_cols=185 Identities=9% Similarity=0.100 Sum_probs=0.0
Q ss_pred hcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 228 VQSPE-KLQRTLEEKKSIREEARDAEKLAMQSFQEKTTTLEVYQKTLKKMSKQS-AQMQAILEQVNSAKSIEKDYKSLKA 305 (432)
Q Consensus 228 v~SPe-~Lk~~i~el~~~l~~l~~~e~~~l~~~q~~~~~l~~~~k~~~dv~~~~-~~l~~~~~~~~~~ke~e~~~~~~k~ 305 (432)
+.+|+ -|...+.+|...+.+++..--.++.+-......+..+.....+...-- .-++.=.+.+. ++.-........
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLA--r~Al~~k~~~~~ 99 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLA--RAALIEKQKAQE 99 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHH
Q ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 306 RLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 385 (432)
Q Consensus 306 ~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie 385 (432)
.....+.++..+..++..+..++..|+.++...+..........+.--...+-....-.-....--...+.++.++..++
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~e 179 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELE 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHh----hHHHHHH------HHHHHHHHHHHHH
Q 014013 386 SKTKFVKES----GAAKLQE------LASKAEEIVEKFQ 414 (432)
Q Consensus 386 ~~~~~~k~~----~e~ei~~------~~~~~~~L~~~i~ 414 (432)
......... .+.++.. +..+...|...++
T Consensus 180 a~aea~~~~~~~~l~~~l~~l~~~~~vd~eLa~LK~~~~ 218 (219)
T TIGR02977 180 AQAESYDLGRKPSLEDEFAELEADDEIERELAALKAKMK 218 (219)
T ss_pred HHHHHhhccCCCCHHHHHHHhcCCChHHHHHHHHHhhhC
No 491
>PRK00106 hypothetical protein; Provisional
Probab=22.64 E-value=9.6e+02 Score=25.64 Aligned_cols=133 Identities=14% Similarity=0.151 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 014013 277 SKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENV 356 (432)
Q Consensus 277 ~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l 356 (432)
...+.++..-..-..-+++.+.+.+.............. .....+....+...+...++.-.....++..-..++..-
T Consensus 32 ~~~~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~--ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qR 109 (535)
T PRK00106 32 AAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALK--KELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTER 109 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Q 014013 357 KLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE 411 (432)
Q Consensus 357 ~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~ 411 (432)
.+..+.....++.++..++.....+...+.+....+..++.-+.....+.+++.+
T Consensus 110 EE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~ 164 (535)
T PRK00106 110 ATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAA 164 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 492
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.60 E-value=3e+02 Score=19.81 Aligned_cols=64 Identities=13% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 014013 347 EDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 347 ~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~ 414 (432)
+...............-...|.++...++.+...+..++.+-..+ ..++..+..++..|.+.++
T Consensus 1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L----~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEEL----KKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcc
No 493
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=22.54 E-value=4.6e+02 Score=27.06 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC
Q 014013 168 DAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 230 (432)
Q Consensus 168 ~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~S 230 (432)
.+-.++|++++.+|.-..++|..++ +.+...|...|++-...-.+++.|+++|+.-+..|
T Consensus 568 k~s~delr~qi~el~~ive~lk~~~---~kel~kl~~dleeek~mr~~lemei~~lkka~~s~ 627 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKKDH---GKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVLSS 627 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhhcC
No 494
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=22.51 E-value=4.5e+02 Score=23.34 Aligned_cols=52 Identities=8% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013 374 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLP 425 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~ 425 (432)
+..+.++...|..++.++..++..=+..|....+.=.++|+.-|.++.++++
T Consensus 109 ~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~fq 160 (166)
T PF06193_consen 109 KDNIIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKKFQ 160 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 495
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=22.50 E-value=5e+02 Score=22.28 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 149 EIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 149 ~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
+...+....+.....+......+..+...|..+...-..-...-..+..........+..-+..+.++..|.+.|+.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 496
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=22.36 E-value=5.2e+02 Score=26.75 Aligned_cols=65 Identities=25% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcC
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKE-------------KTGALDEKFSQTEFDLVQSVQQNADLRSKIVQS 230 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~-------------e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~S 230 (432)
++..+.+.|..++..++.....+...+..++. ....+......+...+..+..+...|+..+..+
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 497
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.05 E-value=5.5e+02 Score=22.64 Aligned_cols=153 Identities=10% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEK 253 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~ 253 (432)
++.-+..+.....++-.-.+....+...+...|.++...+..+-.++++|...--.+--+|- +.+.........+-
T Consensus 4 i~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~----eVS~~f~~ysE~di 79 (159)
T PF05384_consen 4 IKKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLA----EVSRNFDRYSEEDI 79 (159)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhcccCHHHH
Q ss_pred HH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Q 014013 254 LA-MQSFQEKTTTLEVYQKTLKKMSKQSAQMQAILEQVNSAKSIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLD 332 (432)
Q Consensus 254 ~~-l~~~q~~~~~l~~~~k~~~dv~~~~~~l~~~~~~~~~~ke~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~ 332 (432)
+. -......+-.+..+.. .-...-...+++...+.+++++ +.......+..|+-+.-|...+......++.++
T Consensus 80 k~AYe~A~~lQ~~L~~~re---~E~qLr~rRD~LErrl~~l~~t---ierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 80 KEAYEEAHELQVRLAMLRE---REKQLRERRDELERRLRNLEET---IERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHH
Q 014013 333 ELQQ 336 (432)
Q Consensus 333 ~~~~ 336 (432)
.+..
T Consensus 154 ~~q~ 157 (159)
T PF05384_consen 154 QKQQ 157 (159)
T ss_pred Hhhh
No 498
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=22.00 E-value=1.1e+02 Score=24.79 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 128 DLTRLDEQRSELEDKISQLNAEIAAYNEVR-ERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 128 ~~~~f~eer~~l~~~i~~l~~~i~~~~~k~-~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
.+..=+..|..++.....+..+++++.... ++....|..-..+...++.+...|.+........++.+..+...|+.-+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhH
Q 014013 207 SQTE 210 (432)
Q Consensus 207 ~~~~ 210 (432)
..+.
T Consensus 82 ~~~~ 85 (100)
T PF06428_consen 82 ESME 85 (100)
T ss_dssp TT--
T ss_pred HHcc
No 499
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=21.99 E-value=3.6e+02 Score=23.65 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLR-----TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~-----~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
....+..+|+.++.++++++..+. +.+.++..+.+.+..+++.+.......+...+..-.++
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.92 E-value=4.8e+02 Score=23.86 Aligned_cols=52 Identities=6% Similarity=0.199 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
...++.+..++..++.++.+++.....+.++++.++.+...=...+......
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~ 90 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIE 90 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!