Query 014013
Match_columns 432
No_of_seqs 188 out of 299
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:55:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_C Kinetochore protein NUF 100.0 9.3E-37 3.2E-41 286.7 12.0 206 1-239 6-218 (250)
2 1c1g_A Tropomyosin; contractIl 98.8 0.00013 4.4E-09 67.9 42.6 67 351-421 216-282 (284)
3 1i84_S Smooth muscle myosin he 98.0 2.8E-05 9.6E-10 88.3 11.8 58 163-220 886-943 (1184)
4 3na7_A HP0958; flagellar bioge 97.1 0.11 3.8E-06 48.4 21.3 34 377-413 155-188 (256)
5 3na7_A HP0958; flagellar bioge 96.9 0.15 5.2E-06 47.4 21.1 113 304-416 52-169 (256)
6 2v71_A Nuclear distribution pr 96.3 0.49 1.7E-05 41.6 22.6 70 129-201 12-81 (189)
7 3u1c_A Tropomyosin alpha-1 cha 96.2 0.21 7.1E-06 39.5 14.1 90 139-228 7-96 (101)
8 3vkg_A Dynein heavy chain, cyt 95.9 2.4 8.2E-05 52.4 27.6 6 42-47 1766-1771(3245)
9 3u59_A Tropomyosin beta chain; 95.9 0.35 1.2E-05 38.2 14.1 90 139-228 7-96 (101)
10 2ve7_C Kinetochore protein NUF 95.6 0.019 6.6E-07 53.3 6.6 35 16-50 99-133 (250)
11 2ve7_A Kinetochore protein HEC 95.5 0.5 1.7E-05 45.3 16.5 166 12-186 19-209 (315)
12 3vkg_A Dynein heavy chain, cyt 95.0 9.9 0.00034 47.2 30.4 14 34-47 1761-1774(3245)
13 2dfs_A Myosin-5A; myosin-V, in 95.0 0.82 2.8E-05 51.2 18.4 53 317-369 989-1041(1080)
14 3ol1_A Vimentin; structural ge 94.2 1.8 6.3E-05 35.1 15.1 109 110-228 10-118 (119)
15 2dfs_A Myosin-5A; myosin-V, in 94.1 1.4 4.9E-05 49.2 17.8 54 193-246 917-970 (1080)
16 3tnu_A Keratin, type I cytoske 93.6 1.6 5.5E-05 36.0 13.0 76 300-375 33-108 (131)
17 2jee_A YIIU; FTSZ, septum, coi 93.6 1 3.6E-05 33.7 10.5 47 162-208 27-73 (81)
18 3o0z_A RHO-associated protein 93.5 3.3 0.00011 35.5 21.6 65 343-407 89-153 (168)
19 3tnu_B Keratin, type II cytosk 93.1 2.3 7.9E-05 34.9 13.2 72 304-375 35-106 (129)
20 2fxo_A Myosin heavy chain, car 92.4 3.9 0.00013 33.5 17.7 91 130-220 9-99 (129)
21 3cvf_A Homer-3, homer protein 92.0 1.9 6.4E-05 32.2 9.9 67 157-223 8-74 (79)
22 2jee_A YIIU; FTSZ, septum, coi 92.0 2.1 7.3E-05 32.0 10.2 48 177-224 14-61 (81)
23 3oja_B Anopheles plasmodium-re 91.8 4.1 0.00014 42.1 16.4 52 169-220 516-567 (597)
24 3q8t_A Beclin-1; autophagy, AT 91.5 4 0.00014 31.7 13.9 84 142-225 12-95 (96)
25 3ol1_A Vimentin; structural ge 91.1 5.2 0.00018 32.3 15.0 94 299-403 21-114 (119)
26 3s4r_A Vimentin; alpha-helix, 91.1 4.3 0.00015 31.3 12.9 33 122-154 11-43 (93)
27 2v71_A Nuclear distribution pr 91.0 7.5 0.00026 34.0 23.8 94 317-414 61-154 (189)
28 1ic2_A Tropomyosin alpha chain 90.8 4 0.00014 30.6 11.0 70 140-209 5-74 (81)
29 3s4r_A Vimentin; alpha-helix, 90.6 4.7 0.00016 31.1 11.5 69 154-224 15-83 (93)
30 3cve_A Homer protein homolog 1 90.4 3.5 0.00012 30.1 9.8 62 162-223 7-68 (72)
31 3i00_A HIP-I, huntingtin-inter 90.0 2.8 9.5E-05 34.0 10.1 92 320-411 16-113 (120)
32 3o0z_A RHO-associated protein 89.4 9.4 0.00032 32.7 21.7 64 340-403 93-160 (168)
33 3ghg_A Fibrinogen alpha chain; 89.4 6.6 0.00023 39.5 14.1 51 341-391 107-157 (562)
34 2ocy_A RAB guanine nucleotide 89.4 8.9 0.00031 32.4 15.7 38 167-204 56-93 (154)
35 2fxo_A Myosin heavy chain, car 89.0 8.3 0.00028 31.5 16.2 29 129-157 29-57 (129)
36 1ic2_A Tropomyosin alpha chain 88.9 5.2 0.00018 29.9 10.3 16 400-415 51-66 (81)
37 3swk_A Vimentin; cytoskeleton, 88.2 6.8 0.00023 29.7 10.6 75 125-199 5-79 (86)
38 3hnw_A Uncharacterized protein 88.1 4.6 0.00016 33.6 10.4 7 174-180 94-100 (138)
39 1fxk_A Prefoldin; archaeal pro 87.9 8.2 0.00028 30.1 11.9 77 122-198 3-101 (107)
40 3ghg_A Fibrinogen alpha chain; 87.8 13 0.00043 37.5 14.8 46 295-340 114-159 (562)
41 3s84_A Apolipoprotein A-IV; fo 87.2 19 0.00064 33.5 26.1 8 171-178 46-53 (273)
42 3hnw_A Uncharacterized protein 86.5 5.3 0.00018 33.2 9.9 49 167-215 80-128 (138)
43 2zqm_A Prefoldin beta subunit 86.2 11 0.00038 29.8 12.9 83 120-202 6-110 (117)
44 3swk_A Vimentin; cytoskeleton, 84.7 11 0.00038 28.5 10.6 35 187-221 46-80 (86)
45 1x79_B RAB GTPase binding effe 84.6 14 0.00047 29.5 12.3 69 154-225 37-105 (112)
46 1deq_A Fibrinogen (alpha chain 83.8 23 0.00079 34.2 14.0 47 342-388 111-157 (390)
47 2e7s_A RAB guanine nucleotide 83.5 7.1 0.00024 32.2 9.0 104 122-225 20-131 (135)
48 3bas_A Myosin heavy chain, str 83.1 13 0.00046 28.2 11.3 38 169-206 42-79 (89)
49 3u1c_A Tropomyosin alpha-1 cha 82.9 15 0.00051 28.6 14.1 91 123-220 5-95 (101)
50 2v4h_A NF-kappa-B essential mo 81.0 19 0.00064 28.4 11.5 91 108-212 15-105 (110)
51 1deq_A Fibrinogen (alpha chain 80.6 33 0.0011 33.1 13.8 43 296-338 118-160 (390)
52 3a7p_A Autophagy protein 16; c 80.4 18 0.00061 30.3 10.5 61 146-206 73-133 (152)
53 2efr_A General control protein 80.3 26 0.00088 29.6 23.2 102 303-415 47-151 (155)
54 3nmd_A CGMP dependent protein 80.3 7.4 0.00025 28.4 7.1 37 189-225 32-68 (72)
55 2w83_C C-JUN-amino-terminal ki 78.9 17 0.00057 26.7 8.6 35 165-199 12-46 (77)
56 3jsv_C NF-kappa-B essential mo 78.5 20 0.0007 27.4 9.5 81 134-218 9-89 (94)
57 3i00_A HIP-I, huntingtin-inter 78.5 15 0.00052 29.6 9.3 25 160-184 38-62 (120)
58 2v4h_A NF-kappa-B essential mo 77.7 24 0.00082 27.8 10.9 29 189-217 75-103 (110)
59 3tnu_B Keratin, type II cytosk 77.6 14 0.00049 30.0 9.2 43 375-417 78-123 (129)
60 3tnu_A Keratin, type I cytoske 76.4 13 0.00044 30.4 8.6 44 375-418 80-126 (131)
61 3u59_A Tropomyosin beta chain; 76.3 25 0.00085 27.3 13.4 59 123-181 5-63 (101)
62 2v66_B Nuclear distribution pr 76.0 28 0.00095 27.6 15.9 96 315-414 6-101 (111)
63 3qh9_A Liprin-beta-2; coiled-c 76.0 22 0.00074 26.4 10.3 57 166-229 23-79 (81)
64 2b9c_A Striated-muscle alpha t 75.7 34 0.0012 28.6 15.4 98 315-420 41-138 (147)
65 3mq7_A Bone marrow stromal ant 75.5 29 0.00098 27.6 11.8 82 146-230 30-111 (121)
66 2eqb_B RAB guanine nucleotide 74.7 27 0.00093 27.0 13.9 55 124-178 9-63 (97)
67 3etw_A Adhesin A; antiparallel 74.7 31 0.0011 27.7 12.6 47 317-363 7-53 (119)
68 2v66_B Nuclear distribution pr 74.6 30 0.001 27.4 12.6 61 146-206 40-100 (111)
69 4fla_A Regulation of nuclear P 74.5 38 0.0013 28.5 14.5 70 163-232 80-149 (152)
70 3a7p_A Autophagy protein 16; c 74.4 37 0.0013 28.4 11.6 69 353-425 77-145 (152)
71 3mov_A Lamin-B1; LMNB1, B-type 72.7 23 0.00078 27.3 8.6 34 342-375 35-68 (95)
72 3a2a_A Voltage-gated hydrogen 72.2 7.5 0.00026 26.5 4.8 39 189-227 10-48 (58)
73 3cvf_A Homer-3, homer protein 71.9 22 0.00075 26.4 7.9 30 169-198 27-56 (79)
74 1x8y_A Lamin A/C; structural p 71.7 30 0.001 26.0 9.5 23 348-370 32-54 (86)
75 2b9c_A Striated-muscle alpha t 71.6 36 0.0012 28.4 10.3 42 200-241 69-110 (147)
76 3mq9_A Bone marrow stromal ant 70.5 86 0.003 30.9 16.0 23 315-337 400-422 (471)
77 3q8t_A Beclin-1; autophagy, AT 68.9 37 0.0013 26.1 13.2 33 175-207 10-42 (96)
78 2oto_A M protein; helical coil 68.9 50 0.0017 27.6 18.1 57 131-187 26-82 (155)
79 1l8d_A DNA double-strand break 67.8 42 0.0014 26.2 11.3 14 141-154 24-37 (112)
80 1m1j_B Fibrinogen beta chain; 67.7 1E+02 0.0035 30.7 14.9 19 95-115 70-88 (464)
81 1m1j_A Fibrinogen alpha subuni 67.5 1E+02 0.0034 30.5 14.7 43 297-339 117-159 (491)
82 2xnx_M M protein, M1-BC1; cell 67.0 30 0.001 28.7 8.5 56 186-241 69-124 (146)
83 3iv1_A Tumor susceptibility ge 66.7 36 0.0012 25.1 10.1 30 173-202 43-72 (78)
84 1go4_E MAD1 (mitotic arrest de 66.7 30 0.001 26.9 8.0 15 212-226 76-90 (100)
85 3iox_A AGI/II, PA; alpha helix 65.6 1.1E+02 0.0039 30.5 16.3 101 316-420 6-106 (497)
86 3vmx_A Voltage-gated hydrogen 64.2 23 0.00077 23.6 5.8 37 191-227 5-41 (48)
87 3l4q_C Phosphatidylinositol 3- 64.0 69 0.0024 27.4 15.9 62 163-224 90-151 (170)
88 3s9g_A Protein hexim1; cyclin 62.5 51 0.0017 25.3 8.4 8 129-136 19-26 (104)
89 3uux_B Mitochondrial division 62.3 62 0.0021 29.2 10.3 61 120-180 156-216 (242)
90 4dzn_A Coiled-coil peptide CC- 61.5 18 0.00062 21.1 4.3 25 193-217 5-29 (33)
91 3lay_A Zinc resistance-associa 61.3 25 0.00085 30.4 7.4 29 372-400 113-141 (175)
92 3edv_A Spectrin beta chain, br 60.9 1E+02 0.0035 28.4 29.7 29 120-148 39-68 (323)
93 2no2_A HIP-I, huntingtin-inter 60.9 59 0.002 25.5 14.7 25 345-369 48-72 (107)
94 3vem_A Helicase protein MOM1; 60.6 61 0.0021 25.7 10.5 31 383-413 65-95 (115)
95 3mq9_A Bone marrow stromal ant 59.4 1.4E+02 0.0047 29.4 15.9 21 317-337 416-436 (471)
96 2eqb_B RAB guanine nucleotide 58.4 61 0.0021 25.0 12.6 53 129-181 7-59 (97)
97 2efr_A General control protein 58.3 83 0.0028 26.4 21.5 70 143-212 23-92 (155)
98 1kd8_B GABH BLL, GCN4 acid bas 58.2 11 0.00036 23.3 3.1 28 200-227 4-31 (36)
99 3htk_A Structural maintenance 57.6 43 0.0015 23.0 7.6 28 196-223 25-52 (60)
100 2igp_A Retinoblastoma-associat 55.2 23 0.0008 28.5 5.9 81 12-115 21-102 (120)
101 2p2u_A HOST-nuclease inhibitor 54.0 86 0.0029 26.7 9.7 36 385-420 40-75 (171)
102 2j1d_G DAAM1, disheveled-assoc 53.4 1.8E+02 0.0063 29.0 16.8 34 9-42 110-149 (483)
103 3c3f_A Alpha/beta peptide with 53.2 22 0.00076 21.6 3.9 28 199-226 3-30 (34)
104 3iv1_A Tumor susceptibility ge 52.5 68 0.0023 23.7 9.1 18 185-202 41-58 (78)
105 2dq0_A Seryl-tRNA synthetase; 52.3 94 0.0032 30.9 11.0 29 126-154 30-58 (455)
106 1gk4_A Vimentin; intermediate 52.0 71 0.0024 23.7 12.0 24 347-370 29-52 (84)
107 3nmd_A CGMP dependent protein 51.9 65 0.0022 23.4 7.0 29 356-384 24-52 (72)
108 2wq1_A General control protein 51.5 25 0.00085 21.3 3.9 27 200-226 3-29 (33)
109 3jsv_C NF-kappa-B essential mo 50.7 81 0.0028 24.1 9.8 50 176-225 40-89 (94)
110 2yy0_A C-MYC-binding protein; 49.5 22 0.00074 24.3 4.0 17 165-181 22-38 (53)
111 3qne_A Seryl-tRNA synthetase, 48.9 1.1E+02 0.0037 30.8 10.8 27 126-152 32-58 (485)
112 4h22_A Leucine-rich repeat fli 48.4 94 0.0032 24.1 9.5 6 129-134 18-23 (103)
113 3cve_A Homer protein homolog 1 48.2 76 0.0026 23.0 9.7 25 171-195 23-47 (72)
114 1ses_A Seryl-tRNA synthetase; 47.1 97 0.0033 30.5 10.1 27 129-155 30-56 (421)
115 2yy0_A C-MYC-binding protein; 46.8 29 0.00099 23.6 4.3 15 192-206 21-35 (53)
116 1t3j_A Mitofusin 1; coiled coi 46.4 98 0.0034 23.8 8.1 41 379-420 54-94 (96)
117 2oxj_A Hybrid alpha/beta pepti 46.0 33 0.0011 20.8 3.9 28 199-226 3-30 (34)
118 3m48_A General control protein 45.3 27 0.00092 21.2 3.4 27 201-227 4-30 (33)
119 3he5_B Synzip2; heterodimeric 45.3 58 0.002 20.8 6.1 22 206-227 26-47 (52)
120 1x79_B RAB GTPase binding effe 45.1 1.1E+02 0.0039 24.1 12.3 59 318-376 44-102 (112)
121 1m1j_A Fibrinogen alpha subuni 44.6 2.4E+02 0.0083 27.8 16.1 49 344-392 111-159 (491)
122 1wle_A Seryl-tRNA synthetase; 44.3 1.3E+02 0.0046 30.2 10.8 8 132-139 75-82 (501)
123 3efg_A Protein SLYX homolog; x 44.3 80 0.0027 23.2 6.8 47 163-209 15-61 (78)
124 2wuj_A Septum site-determining 44.2 27 0.00092 24.1 3.9 48 101-148 3-55 (57)
125 3m91_A Proteasome-associated A 43.7 72 0.0025 21.5 6.7 26 197-222 23-48 (51)
126 1x8y_A Lamin A/C; structural p 43.7 89 0.0031 23.3 7.2 42 166-207 32-73 (86)
127 1kd8_A GABH AIV, GCN4 acid bas 43.5 18 0.00063 22.3 2.5 27 201-227 5-31 (36)
128 2k48_A Nucleoprotein; viral pr 43.3 1.1E+02 0.0039 23.7 7.7 38 199-236 37-74 (107)
129 4emc_A Monopolin complex subun 43.0 1.4E+02 0.0048 25.8 9.0 50 346-395 15-64 (190)
130 3c3g_A Alpha/beta peptide with 42.8 41 0.0014 20.3 3.9 27 200-226 3-29 (33)
131 1go4_E MAD1 (mitotic arrest de 42.7 1.2E+02 0.004 23.6 8.7 23 391-413 69-91 (100)
132 1m1j_B Fibrinogen beta chain; 42.1 2.7E+02 0.0093 27.7 16.8 17 139-155 98-114 (464)
133 1deb_A APC protein, adenomatou 41.9 75 0.0026 21.2 6.7 35 164-198 12-46 (54)
134 1u4q_A Spectrin alpha chain, b 41.5 2.1E+02 0.0071 26.1 29.6 51 197-247 149-199 (322)
135 1deb_A APC protein, adenomatou 41.4 77 0.0026 21.1 6.5 40 186-225 6-45 (54)
136 1wle_A Seryl-tRNA synthetase; 41.2 1.4E+02 0.0048 30.1 10.4 31 164-194 72-102 (501)
137 3hhm_B NISH2 P85alpha; PI3KCA, 41.2 2.5E+02 0.0086 27.0 17.1 77 163-239 199-278 (373)
138 1otr_A Protein CUE2; protein-p 40.9 16 0.00056 24.5 2.3 18 5-22 14-31 (49)
139 2e7s_A RAB guanine nucleotide 40.9 1.5E+02 0.0051 24.3 8.6 33 317-352 65-97 (135)
140 1ci6_A Transcription factor AT 40.8 60 0.0021 22.7 5.4 19 165-183 33-51 (63)
141 2ocy_A RAB guanine nucleotide 40.2 1.6E+02 0.0056 24.6 18.7 67 299-368 59-125 (154)
142 2l5g_B Putative uncharacterize 39.6 74 0.0025 20.4 5.1 29 364-392 8-36 (42)
143 2ve7_A Kinetochore protein HEC 39.6 2.3E+02 0.0078 26.5 11.1 44 4-47 62-111 (315)
144 4emc_A Monopolin complex subun 39.5 1.9E+02 0.0064 25.0 9.5 40 161-200 19-58 (190)
145 1m1j_C Fibrinogen gamma chain; 38.1 3E+02 0.01 26.9 14.0 15 316-330 109-123 (409)
146 1cii_A Colicin IA; bacteriocin 37.8 3.1E+02 0.011 27.1 12.9 48 148-195 356-403 (602)
147 2no2_A HIP-I, huntingtin-inter 37.2 1.5E+02 0.005 23.2 15.5 66 320-385 30-95 (107)
148 2xzr_A Immunoglobulin-binding 36.9 1.4E+02 0.0047 22.8 15.9 45 174-218 60-104 (114)
149 4eah_A Formin-like protein 3, 36.8 2E+02 0.0069 27.9 10.5 34 9-42 104-142 (402)
150 1uo4_A General control protein 36.4 45 0.0015 20.3 3.4 27 200-226 4-30 (34)
151 3kbt_A Beta-I spectrin, spectr 36.3 2.5E+02 0.0086 25.6 26.9 57 316-372 260-317 (326)
152 2lf0_A Uncharacterized protein 36.1 1.6E+02 0.0056 23.4 7.8 48 140-187 9-61 (123)
153 2w83_C C-JUN-amino-terminal ki 36.1 1.3E+02 0.0043 22.0 10.0 31 184-214 17-47 (77)
154 3lss_A Seryl-tRNA synthetase; 35.5 2.2E+02 0.0076 28.5 10.7 27 126-152 36-62 (484)
155 3ra3_B P2F; coiled coil domain 34.8 42 0.0014 18.8 2.9 23 194-216 4-26 (28)
156 2bni_A General control protein 34.7 46 0.0016 20.3 3.3 26 200-225 4-29 (34)
157 4etp_A Kinesin-like protein KA 34.5 90 0.0031 30.5 7.5 38 166-203 21-58 (403)
158 2avr_X Adhesion A; antiparalle 34.3 1.8E+02 0.006 23.2 12.6 37 320-356 10-46 (119)
159 2e50_A Protein SET; histone ch 34.3 1.6E+02 0.0054 26.2 8.5 50 376-425 30-79 (225)
160 3qne_A Seryl-tRNA synthetase, 33.4 1.5E+02 0.0052 29.7 9.1 23 167-189 38-60 (485)
161 3he5_A Synzip1; heterodimeric 33.2 93 0.0032 19.7 6.5 18 210-227 30-47 (49)
162 2lw1_A ABC transporter ATP-bin 33.0 1.5E+02 0.0052 22.0 8.4 41 206-246 24-70 (89)
163 3swy_A Cyclic nucleotide-gated 32.6 98 0.0033 20.3 5.0 23 169-191 5-27 (46)
164 2dq3_A Seryl-tRNA synthetase; 32.4 1.1E+02 0.0036 30.2 7.7 33 125-157 28-60 (425)
165 2dq0_A Seryl-tRNA synthetase; 32.2 1.5E+02 0.0052 29.4 8.9 29 165-193 34-62 (455)
166 3m9b_A Proteasome-associated A 32.1 53 0.0018 29.9 4.9 22 202-223 73-94 (251)
167 4ani_A Protein GRPE; chaperone 31.8 2.7E+02 0.0092 24.6 9.5 37 163-199 60-96 (213)
168 3viq_B Mating-type switching p 31.3 1.2E+02 0.0042 22.6 6.0 41 201-241 5-47 (85)
169 2lw1_A ABC transporter ATP-bin 31.1 1.5E+02 0.0051 22.1 6.7 53 366-418 23-77 (89)
170 3s84_A Apolipoprotein A-IV; fo 31.0 3.1E+02 0.011 25.1 28.4 38 165-202 18-56 (273)
171 3u06_A Protein claret segregat 30.1 1.1E+02 0.0038 30.0 7.3 21 187-207 21-41 (412)
172 3ra3_A P1C; coiled coil domain 29.8 67 0.0023 18.0 3.2 20 167-186 5-24 (28)
173 3mov_A Lamin-B1; LMNB1, B-type 29.7 1.9E+02 0.0063 22.1 8.1 36 167-202 42-77 (95)
174 1ik9_A DNA repair protein XRCC 28.9 3E+02 0.01 24.2 11.0 8 120-127 125-132 (213)
175 1t2k_D Cyclic-AMP-dependent tr 28.8 1.4E+02 0.0049 20.5 8.8 42 366-411 16-57 (61)
176 1wt6_A Myotonin-protein kinase 28.8 1.8E+02 0.006 21.5 9.1 27 170-196 39-65 (81)
177 1jcd_A Major outer membrane li 28.7 1.4E+02 0.0046 20.2 7.3 41 166-206 8-48 (52)
178 2hy6_A General control protein 28.6 76 0.0026 19.3 3.5 25 201-225 5-29 (34)
179 3ci9_A Heat shock factor-bindi 27.4 1.4E+02 0.0047 19.8 5.1 38 391-428 7-44 (48)
180 1ses_A Seryl-tRNA synthetase; 26.4 1.5E+02 0.005 29.2 7.5 27 164-190 30-56 (421)
181 3hhm_B NISH2 P85alpha; PI3KCA, 26.4 4.4E+02 0.015 25.3 14.8 51 177-227 199-249 (373)
182 4fi5_A Nucleoprotein; structur 26.3 2.4E+02 0.0081 22.2 7.4 35 201-235 26-60 (113)
183 3hd7_B Syntaxin-1A; membrane p 25.8 2.3E+02 0.0079 21.9 10.3 31 163-193 15-45 (109)
184 2lnh_A N-WAsp, neural wiskott- 25.8 45 0.0015 23.7 2.6 31 11-44 24-55 (65)
185 2es9_A Putative cytoplasmic pr 25.3 31 0.0011 26.3 1.8 36 11-47 38-79 (115)
186 3efg_A Protein SLYX homolog; x 24.8 2.1E+02 0.007 20.9 6.7 22 167-188 12-33 (78)
187 3vp9_A General transcriptional 24.5 1.4E+02 0.0049 22.6 5.4 37 372-408 50-86 (92)
188 3m91_A Proteasome-associated A 24.2 1.7E+02 0.0057 19.7 6.8 27 166-192 20-46 (51)
189 1gu4_A CAAT/enhancer binding p 24.2 2.1E+02 0.0073 20.9 7.1 16 216-231 62-77 (78)
190 2r2v_A GCN4 leucine zipper; co 23.9 1.3E+02 0.0044 18.3 3.9 23 202-224 6-28 (34)
191 2i1j_A Moesin; FERM, coiled-co 23.9 79 0.0027 32.5 5.2 15 316-330 515-529 (575)
192 1gu4_A CAAT/enhancer binding p 23.6 2.2E+02 0.0075 20.8 9.2 28 161-188 42-69 (78)
193 3haj_A Human pacsin2 F-BAR; pa 23.3 5.5E+02 0.019 25.3 18.9 159 109-271 74-245 (486)
194 3lss_A Seryl-tRNA synthetase; 23.2 3.4E+02 0.012 27.1 9.5 29 165-193 40-68 (484)
195 1gk4_A Vimentin; intermediate 23.1 2.3E+02 0.0078 20.9 11.5 42 165-206 29-70 (84)
196 3uun_A Dystrophin; triple heli 22.9 2.4E+02 0.0083 21.1 13.3 14 351-364 85-98 (119)
197 2a3d_A Protein (de novo three- 22.4 68 0.0023 21.9 2.8 44 374-417 28-71 (73)
198 2z5i_A TM, general control pro 22.4 1.4E+02 0.0047 20.1 4.4 40 204-243 5-44 (52)
199 3he5_B Synzip2; heterodimeric 22.4 1.6E+02 0.0054 18.8 6.0 15 175-189 9-23 (52)
200 2ic6_A Nucleocapsid protein; h 22.4 2.3E+02 0.008 20.7 7.6 37 200-236 8-44 (78)
201 1t6f_A Geminin; coiled-coil, c 22.2 1.5E+02 0.005 18.3 4.3 24 200-223 10-33 (37)
202 1zhc_A Hypothetical protein HP 22.0 1.5E+02 0.0052 21.5 5.0 48 160-208 15-62 (76)
203 2pjw_V Vacuolar protein sortin 21.2 2.7E+02 0.0092 21.0 6.8 55 374-428 35-89 (91)
204 1lq7_A Alpha3W; three helix bu 21.1 1.5E+02 0.0053 19.8 4.3 16 194-209 29-44 (67)
205 3f1i_H Hepatocyte growth facto 21.0 2.8E+02 0.0096 21.1 8.8 21 345-365 73-93 (98)
206 3r4h_A Coiled coil helix CC-TE 20.9 1.4E+02 0.0047 17.5 3.6 25 193-217 5-29 (34)
207 2w6a_A ARF GTPase-activating p 20.5 2.2E+02 0.0075 19.7 7.4 34 157-190 22-55 (63)
208 3vem_A Helicase protein MOM1; 20.3 3.2E+02 0.011 21.5 10.1 19 350-368 67-85 (115)
209 3obv_E Protein diaphanous homo 20.2 6.3E+02 0.021 24.8 14.8 34 9-42 100-138 (457)
210 3tnf_B LIDA, RAS-related prote 20.1 3.5E+02 0.012 24.9 7.9 59 169-244 18-76 (384)
No 1
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=100.00 E-value=9.3e-37 Score=286.68 Aligned_cols=206 Identities=19% Similarity=0.258 Sum_probs=156.0
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCcC-----CCChhhc-CCCChhHHHHHHHHHH-HHhccCCCCchhhhcHHHhhcCCCch
Q 014013 1 MSKFDYPRLSATEIVTILTETEIA-----VITENDL-KNPNPDFVSDLYTRLL-IFLDVLHEDDQGQLDFAALEQLENPD 73 (432)
Q Consensus 1 ms~~~fP~l~~~eIv~~L~~~~~~-----~~t~~dl-~kPt~~~v~~ly~~~l-~~~~~~~~~~~~~~~~~~~~~~~~pe 73 (432)
||+|+||+|+++|||+||++|||+ +||++|| .||||++|++||++|| .+||++.++.. ++ +....++||+
T Consensus 6 ms~~~FP~L~~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Ptp~~v~~iy~~~l~~~~g~~~e~~~-~~--~~~~~~~~pe 82 (250)
T 2ve7_C 6 METLSFPRYNVAEIVIHIRNKILTGADGKNLTKNDLYPNPKPEVLHMIYMRALQIVYGIRLEHFY-MM--PVNSGVMYPH 82 (250)
T ss_dssp ---CCCCCCCHHHHHHHHHHHTCCHHHHHTCCGGGTSSSCCHHHHHHHHHHHHHHHHCCCSGGGS-CC--CSSCCCSCGG
T ss_pred cccCCCCCCCHHHHHHHHHHcCCCCccccCCCHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHh-cc--chhhcccChh
Confidence 899999999999999999999995 5899999 8999999999999999 89999866543 22 2335678999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccccCCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 74 LHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLIRPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAY 153 (432)
Q Consensus 74 ~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~ 153 (432)
+|.+|+++++||++|++||..|||+ |||++||++|+|+||+ ++||++|| |.+||+++... ++++
T Consensus 83 l~~~si~~l~~~r~l~~~l~~~gv~-DFtl~DL~kP~~~Rt~----~iLSalIN-F~~FRE~~~~~----------~~e~ 146 (250)
T 2ve7_C 83 LMEGFLPFSNLVTHLDSFLPICRVN-DFETADILCPKAKRTS----RFLSGIIN-FIHFREACRET----------YMEF 146 (250)
T ss_dssp GGTTTHHHHHHHHHHHHHHHHTTCC-CCCHHHHHSCCHHHHH----HHHHHHHH-HHHHHHHHHHH----------HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCC-CCcHhHhcCCchHHHH----HHHHHHHH-HHHHHHHHHHH----------HHHH
Confidence 9999999999999999999999999 9999999999999999 99999999 99999999865 3344
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHH
Q 014013 154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEK 233 (432)
Q Consensus 154 ~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~ 233 (432)
-.+.+....+++++..++++++++|.+++....+.. ..+.-....+.++...+.+++-...++|+.
T Consensus 147 ~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~--------------te~~p~~k~~~qly~~vt~i~w~~~~~~~~ 212 (250)
T 2ve7_C 147 LWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT--------------TVTIPSAVYVAQLYHQVSKIEWEYECEPGM 212 (250)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHSCC---------------------------CTTTHHHHHHHHHHHCCEECSCCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhhhHHHHHHHHHHHHHhhceeecccCcch
Confidence 444445555666777777777777766666544333 333333444555667777777777778877
Q ss_pred HHHHHH
Q 014013 234 LQRTLE 239 (432)
Q Consensus 234 Lk~~i~ 239 (432)
+++.+.
T Consensus 213 i~g~~~ 218 (250)
T 2ve7_C 213 VKGIHH 218 (250)
T ss_dssp EEEEC-
T ss_pred hceeee
Confidence 776553
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.76 E-value=0.00013 Score=67.87 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 351 RAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIG 421 (432)
Q Consensus 351 ~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~ 421 (432)
..+..+...+..+...+......+......+..+...+..+ ..++..+...+..+...+..+.+.|.
T Consensus 216 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~L~ 282 (284)
T 1c1g_A 216 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL----EDELYAQKLKYKAISEELDHALNDMT 282 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444444444444 44555666666666666666555543
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.96 E-value=2.8e-05 Score=88.31 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~ 220 (432)
.+..+..+...++..+.........+...+..+..+...+..++.++...+.....++
T Consensus 886 ~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l 943 (1184)
T 1i84_S 886 KHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943 (1184)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333333333333444444444444444444444443333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.05 E-value=0.11 Score=48.38 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014013 377 VVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKF 413 (432)
Q Consensus 377 ~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i 413 (432)
+..++..+..+...+...+. ..+...|.++....
T Consensus 155 ~~~e~~~l~~~r~~l~~~i~---~~lL~~Yerir~~~ 188 (256)
T 3na7_A 155 IKETQQIIFKKKEDLVEKTE---PKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTSC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhC
Confidence 33444444444445555555 56777788887653
No 5
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.93 E-value=0.15 Score=47.42 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=57.6
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 014013 304 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQ-----LEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 378 (432)
Q Consensus 304 k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~-----~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~ 378 (432)
+..+.+....+..++..+.....++.+.+.++.. --......++.+..++..+..+...+...++..+..++...
T Consensus 52 ~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~ 131 (256)
T 3na7_A 52 EEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLK 131 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444444444321 11233334445555555555555555556665666666666
Q ss_pred HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 379 TEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQY 416 (432)
Q Consensus 379 ~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y 416 (432)
..+..++......+......+..+..+...|......+
T Consensus 132 ~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l 169 (256)
T 3na7_A 132 KEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666555555544433
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.34 E-value=0.49 Score=41.60 Aligned_cols=70 Identities=20% Similarity=0.281 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGA 201 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~e 201 (432)
+..+++.-......+.+++.+++++..--.+ ...++++++..++..+..|......+..++..++.+...
T Consensus 12 ~~ywk~~~~~~~q~~~~le~El~EFqesSrE---LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 12 TAYWKELSMKYKQSFQEARDELVEFQEGSRE---LEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555555555555432211 112344444444555555544444444444444444333
No 7
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.17 E-value=0.21 Score=39.54 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013 139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 218 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~ 218 (432)
+..++..|+.+.+....+.......+.....++..++.++..|++....+..+++.+.........+++........+..
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ 86 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAES 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666777788888888999999999999999999999999999999999988888888888
Q ss_pred HHHHHHhhhh
Q 014013 219 QNADLRSKIV 228 (432)
Q Consensus 219 e~~~L~~~iv 228 (432)
++..|..+|.
T Consensus 87 ev~~L~Rriq 96 (101)
T 3u1c_A 87 EVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887763
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.88 E-value=2.4 Score=52.43 Aligned_cols=6 Identities=33% Similarity=0.600 Sum_probs=2.4
Q ss_pred HHHHHH
Q 014013 42 LYTRLL 47 (432)
Q Consensus 42 ly~~~l 47 (432)
+|..|+
T Consensus 1766 l~~~Fi 1771 (3245)
T 3vkg_A 1766 LYKYFT 1771 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=95.85 E-value=0.35 Score=38.19 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013 139 LEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 218 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~ 218 (432)
+..++..|+.+.+....+.......+.....++..++.++..+++....+..+++.+.........+++........+..
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~ 86 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEA 86 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666777778888888899999999999999999999999999999999999888898899
Q ss_pred HHHHHHhhhh
Q 014013 219 QNADLRSKIV 228 (432)
Q Consensus 219 e~~~L~~~iv 228 (432)
++..|..+|.
T Consensus 87 evasLnRriq 96 (101)
T 3u59_A 87 EVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887763
No 10
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=95.59 E-value=0.019 Score=53.35 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=22.5
Q ss_pred HHHhhcCcCCCChhhcCCCChhHHHHHHHHHHHHh
Q 014013 16 TILTETEIAVITENDLKNPNPDFVSDLYTRLLIFL 50 (432)
Q Consensus 16 ~~L~~~~~~~~t~~dl~kPt~~~v~~ly~~~l~~~ 50 (432)
..+..||+++||-.||.+|+|.-+..+...++.|+
T Consensus 99 ~~l~~~gv~DFtl~DL~kP~~~Rt~~iLSalINF~ 133 (250)
T 2ve7_C 99 SFLPICRVNDFETADILCPKAKRTSRFLSGIINFI 133 (250)
T ss_dssp HHHHHTTCCCCCHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcHhHhcCCchHHHHHHHHHHHHHH
Confidence 34555666667777777777776666666666554
No 11
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=95.52 E-value=0.5 Score=45.31 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCcC-CCChhhcCCCChhHHHHHHHHHHHHhccC----CCCchhhhcHHHhhcCCCc--------------
Q 014013 12 TEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVL----HEDDQGQLDFAALEQLENP-------------- 72 (432)
Q Consensus 12 ~eIv~~L~~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~~~~----~~~~~~~~~~~~~~~~~~p-------------- 72 (432)
.+|..+|...|++ .+|...|..||.--...||.+++.+++-. ......-++ +.+-.+.||
T Consensus 19 ~~i~~fL~~~~~~~~is~k~L~~Pt~KdF~~if~fL~~~idp~~~~~~~k~eeev~-~~lK~L~YP~~isKS~L~a~g~p 97 (315)
T 2ve7_A 19 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVP-RIFKDLGYPFALSKSSMYTVGAP 97 (315)
T ss_dssp HHHHHHHHHTTCSSCCCTGGGSSCCHHHHHHHHHHHHTTTSTTCCCCSSCHHHHHH-HHHHHTTCSSCCCHHHHHTTTST
T ss_pred HHHHHHHHhcCCCCCCCcccCCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHH-HHHHHcCCCceeCHHHhcCCCCC
Confidence 6788889998985 39999999999999999999998666511 001111111 122333333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccc---CC---CCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 73 DLHVRSVQIMKLYSMVKEVVTTVNCPMNFTLKDLI---RP---DATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQL 146 (432)
Q Consensus 73 e~~~~s~~~l~~~~~~~~~~~~~gv~~DFt~~Dl~---~P---~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l 146 (432)
.....-++.|.+..-+.++...+... +-.+.|=. .+ +..-.. -++.++..-|..|-.......+.-.++
T Consensus 98 HsWp~~Lg~L~WLvel~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~----~~~~y~~~~Y~~fl~~~d~~~~~~~e~ 172 (315)
T 2ve7_A 98 HTWPHIVAALVWLIDCIKIHTAMKES-SPLFDDGQPWGEETEDGIMHNK----LFLDYTIKCYESFMSGADSFDEMNAEL 172 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHC-C---------CCBCTTSCBSHH----HHHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhc-cccccchhcccccccccchHHH----HHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence 22344566666666655555443111 11111100 00 011122 366677776777766442222222233
Q ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 147 NAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQV 186 (432)
Q Consensus 147 ~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~ 186 (432)
...+.+.. ......++.+.++++.|+.++.+|.+...
T Consensus 173 ~~~~~~~~---n~~~~eie~L~~~~~~L~eEi~~Le~~~e 209 (315)
T 2ve7_A 173 QSKLKDLF---NVDAFKLESLEAKNRALNEQIARLEQERS 209 (315)
T ss_dssp HHHHHHHH---TCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 22345667777777777777777755433
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.05 E-value=9.9 Score=47.19 Aligned_cols=14 Identities=7% Similarity=0.157 Sum_probs=10.0
Q ss_pred CChhHHHHHHHHHH
Q 014013 34 PNPDFVSDLYTRLL 47 (432)
Q Consensus 34 Pt~~~v~~ly~~~l 47 (432)
||++-+-..|..-+
T Consensus 1761 dt~~~l~~~Fi~rv 1774 (3245)
T 3vkg_A 1761 DSEEELYKYFTSQV 1774 (3245)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 57777777777665
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.00 E-value=0.82 Score=51.17 Aligned_cols=53 Identities=9% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEA 369 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~ 369 (432)
|+..+..+...++++.+..+.+++......++++.++..|+.+...+.+..+.
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~ 1041 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433333333344445555555555444444443
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.22 E-value=1.8 Score=35.07 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 110 DATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLR 189 (432)
Q Consensus 110 ~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~ 189 (432)
.|.++..-+...++.+-..+.....++..+...++.++...++++.+-+........+++++..|+..+....=....|.
T Consensus 10 ~~~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE 89 (119)
T 3ol1_A 10 HMSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLE 89 (119)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 34555511223334444444555556666777788888888888877665444444443333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014013 190 TTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIV 228 (432)
Q Consensus 190 ~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv 228 (432)
..++.++. ++.|....-.+|+..|+++|.
T Consensus 90 ~~iesL~e----------El~FLKk~heeEl~eLq~qi~ 118 (119)
T 3ol1_A 90 RKVESLQE----------EIAFLKKLHEEEIQELQAQIQ 118 (119)
T ss_dssp HHHHHHHH----------HHHHHHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 33322222 234444445667777776653
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.15 E-value=1.4 Score=49.19 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHH
Q 014013 193 NKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIRE 246 (432)
Q Consensus 193 ~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~ 246 (432)
..++..+..|..++.++...+...+.+...|...+..-.+.+...+.+|+..++
T Consensus 917 ~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~ 970 (1080)
T 2dfs_A 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970 (1080)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344455666677777777777666667666666655444555555555544443
No 16
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.61 E-value=1.6 Score=36.04 Aligned_cols=76 Identities=12% Similarity=0.150 Sum_probs=42.8
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013 300 YKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 375 (432)
Q Consensus 300 ~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie 375 (432)
+...+..+.+....+..|+..+..+..+...|+..+..........+..++..+..|..+...+..+++..-.+..
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666667777777777666666666666655556656666666666666666666555555444444
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.60 E-value=1 Score=33.71 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
-.++++..+|..|.++..++......+..+...++.+...+..+|..
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555443
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.50 E-value=3.3 Score=35.52 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=31.8
Q ss_pred hHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Q 014013 343 NLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAE 407 (432)
Q Consensus 343 ~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~ 407 (432)
...+.++..++..|..+.+...........+.-.....+..+|.+.+.+.-+..-+++.+...|.
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~e 153 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 33444556666666666655554444444444444455555555444443333344444444443
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.09 E-value=2.3 Score=34.92 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=40.7
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013 304 KARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 375 (432)
Q Consensus 304 k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie 375 (432)
+..+++....+..|+..+..+..+...|+..+..........+..++.++..|..+......+++..-.+..
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444444455666666666666666666655555555555566666666666666655555555444444
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.40 E-value=3.9 Score=33.53 Aligned_cols=91 Identities=10% Similarity=0.155 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 130 TRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 130 ~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
++..++.....+.+..+...+......+.........+..+...|...|..-..........+..+...+.+|..+|.++
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444544444444444444333344444444444444444444444444444555555555555555554
Q ss_pred HHHHHHHHHHH
Q 014013 210 EFDLVQSVQQN 220 (432)
Q Consensus 210 ~~~l~~l~~e~ 220 (432)
...+......+
T Consensus 89 ~~rleeeee~~ 99 (129)
T 2fxo_A 89 NKRLEDEEEMN 99 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 21
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.03 E-value=1.9 Score=32.23 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014013 157 RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 223 (432)
Q Consensus 157 ~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L 223 (432)
.+.....++.++.+|..|+.++..++.....-..+...++.+...+...|.-.-+++..+++..++|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3445567788888999999999999988888888888888888777777777777777777777665
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.98 E-value=2.1 Score=32.02 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 177 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 177 ~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
++..+-....-+.-+++++|.++..+....+++......+..++..|+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333333333333444443333333333333333333333333
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.83 E-value=4.1 Score=42.08 Aligned_cols=52 Identities=10% Similarity=0.071 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~ 220 (432)
.+.+.++.++....+...+....++.++.+..++..++++....+.+++++.
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 516 ERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 3333333333333333333334444444444444444444444444333333
No 24
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=91.45 E-value=4 Score=31.68 Aligned_cols=84 Identities=13% Similarity=0.179 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 142 KISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 142 ~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
.+..+..+=..+.......+..-..+..++..++.+...+...-..+-.+++.++-+..++...+.++...+.-.....+
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444555666666666666666666667777777777777777777777777777777777
Q ss_pred HHHh
Q 014013 222 DLRS 225 (432)
Q Consensus 222 ~L~~ 225 (432)
+|+.
T Consensus 92 kL~K 95 (96)
T 3q8t_A 92 KLKK 95 (96)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 7764
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.14 E-value=5.2 Score=32.35 Aligned_cols=94 Identities=14% Similarity=0.222 Sum_probs=52.3
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHH
Q 014013 299 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVV 378 (432)
Q Consensus 299 ~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~ 378 (432)
.+..++..+...+.....+..++..++.-++.++.+.+.... +...+...+..|+..++.. --..-..+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~----~r~~~E~di~~lrK~lD~~-------~l~r~dLE 89 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML----QREEAENTLQSFRQDVDNA-------SLARLDLE 89 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHhhhcccHH-------HHHHHHHH
Confidence 344555555555555556666666666666666665543211 1112222333333333222 22222356
Q ss_pred HHHHHHHHhHHHHHHhhHHHHHHHH
Q 014013 379 TEVDAITSKTKFVKESGAAKLQELA 403 (432)
Q Consensus 379 ~~i~~ie~~~~~~k~~~e~ei~~~~ 403 (432)
.++..+..++.-+|..|+.|+..+.
T Consensus 90 ~~iesL~eEl~FLKk~heeEl~eLq 114 (119)
T 3ol1_A 90 RKVESLQEEIAFLKKLHEEEIQELQ 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788899999998888765
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=91.05 E-value=4.3 Score=31.30 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
+..+-++|+.|-+.-..++..+..|..++..+.
T Consensus 11 mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 11 LQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666665555555555555555444
No 27
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.04 E-value=7.5 Score=34.03 Aligned_cols=94 Identities=10% Similarity=0.027 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGA 396 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e 396 (432)
|+.+...+...++.|+.+......+...-+..++..+..|+.....+...+-..+...+..+........-..+ ++
T Consensus 61 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD----~e 136 (189)
T 2v71_A 61 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED----FE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH----HH
Confidence 33444444444444444444444444434444445555555544444433333333333333333322222223 34
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014013 397 AKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 397 ~ei~~~~~~~~~L~~~i~ 414 (432)
...+.+...-.-|.+.+.
T Consensus 137 ~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 137 QRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 28
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.77 E-value=4 Score=30.56 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 140 EDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
..++..|+.+.+....+.......+.+.......++.++..|++....+..+++.+..+......+|+..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666555555555556666666777777777777777777777777777777666666654
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.64 E-value=4.7 Score=31.12 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=40.1
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 154 ~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
+.+.+.--..|..|++.|..|+.++..+..... .....-|...+..+...|..+...-..+.-++++|.
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444567788889999998888765432 233344555555555555555555555555444433
No 30
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.42 E-value=3.5 Score=30.15 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014013 162 PLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADL 223 (432)
Q Consensus 162 ~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L 223 (432)
..++.++.+|..|+.++..++.....-..+....+.+...+...|.-.-+++..+++..++|
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 34567777888888888888887777777777777777777666666666667666666654
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=90.03 E-value=2.8 Score=34.04 Aligned_cols=92 Identities=9% Similarity=0.080 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH
Q 014013 320 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV------KE 393 (432)
Q Consensus 320 ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~------k~ 393 (432)
.+..|...++.|+..++....++...+..++.++..|..+.+.-+..+.....+.+.+..+...++....+. -.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~ 95 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLS 95 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344566666666666666677777788888888888888887766555554555555555555443322211 12
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014013 394 SGAAKLQELASKAEEIVE 411 (432)
Q Consensus 394 ~~e~ei~~~~~~~~~L~~ 411 (432)
+.+..-+..+..|.+|..
T Consensus 96 e~E~kAqa~Eerf~KLKe 113 (120)
T 3i00_A 96 EIERKAQANEQRYSKLKE 113 (120)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455666666543
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=89.43 E-value=9.4 Score=32.66 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=50.2
Q ss_pred HHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHhhHHHHHHHH
Q 014013 340 KERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT----SKTKFVKESGAAKLQELA 403 (432)
Q Consensus 340 ~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie----~~~~~~k~~~e~ei~~~~ 403 (432)
.+...++..+...++.++.-+..+..++......+-..+++..+++ .++..++..++.|+.+=.
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777777777788888888888888 889999999998887643
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.41 E-value=6.6 Score=39.49 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=26.9
Q ss_pred HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014013 341 ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFV 391 (432)
Q Consensus 341 ~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~ 391 (432)
...+.-+++++++..|+.++.....-+...+..|+....+|..||..|+-.
T Consensus 107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556665665555554444445555555555555555555443
No 34
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.40 E-value=8.9 Score=32.37 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDE 204 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~ 204 (432)
...+...|...+.+-.............+..+..+|..
T Consensus 56 ~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTa 93 (154)
T 2ocy_A 56 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 93 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444443
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.05 E-value=8.3 Score=31.53 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
+..-...|..++.....+..+..++....
T Consensus 29 l~k~e~~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 29 LEKSEARRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555444433
No 36
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.95 E-value=5.2 Score=29.90 Aligned_cols=16 Identities=6% Similarity=0.214 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 014013 400 QELASKAEEIVEKFQQ 415 (432)
Q Consensus 400 ~~~~~~~~~L~~~i~~ 415 (432)
+.++..+......+..
T Consensus 51 q~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 51 KGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 37
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=88.23 E-value=6.8 Score=29.71 Aligned_cols=75 Identities=16% Similarity=0.337 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
+-+.+..+..++..+...++.++..+++++.|-+.+......++++...|+..+-.+.=....|...++.++.+.
T Consensus 5 Lr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 5 LRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666667777777777777776655555555555555555555544444444444444444443
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.13 E-value=4.6 Score=33.57 Aligned_cols=7 Identities=14% Similarity=0.401 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 014013 174 LRQTIQD 180 (432)
Q Consensus 174 Le~~L~~ 180 (432)
|+.+|..
T Consensus 94 lK~el~~ 100 (138)
T 3hnw_A 94 LKHELIA 100 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 39
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=87.94 E-value=8.2 Score=30.11 Aligned_cols=77 Identities=12% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------chhHHHHHHHHHHHHHHHH
Q 014013 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE----------------------LPLVQEVDAKVKELRQTIQ 179 (432)
Q Consensus 122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~----------------------~~~i~el~~e~~eLe~~L~ 179 (432)
+...+|+|.++..+...+...+..+..++.++.....+. ......+..+.+.++..+.
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888888888888877777776544321 1122455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014013 180 DLNKHQVSLRTTLNKLKEK 198 (432)
Q Consensus 180 ~l~~~q~~l~~~~~~~k~e 198 (432)
.+.+....+...+.+++..
T Consensus 83 ~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444433
No 40
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.76 E-value=13 Score=37.49 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 295 SIEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK 340 (432)
Q Consensus 295 e~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~ 340 (432)
++++.+..++.++++.=.+++.|+..|..+..++++|+-.+..+-+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665556677777777777777777777766444
No 41
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=87.25 E-value=19 Score=33.48 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014013 171 VKELRQTI 178 (432)
Q Consensus 171 ~~eLe~~L 178 (432)
.++++.+|
T Consensus 46 le~lr~~L 53 (273)
T 3s84_A 46 LRELQQRL 53 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=86.55 E-value=5.3 Score=33.22 Aligned_cols=49 Identities=10% Similarity=0.238 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQ 215 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~ 215 (432)
+..+++++..++..|+....++...++..+.+..++..++..+...+.+
T Consensus 80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444433333333
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=86.20 E-value=11 Score=29.82 Aligned_cols=83 Identities=13% Similarity=0.222 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------chhHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERE----------------------LPLVQEVDAKVKELRQT 177 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~----------------------~~~i~el~~e~~eLe~~ 177 (432)
.-+..++++|.++..+...+...+..+..++.++.....+. ...+..|..+.+.++..
T Consensus 6 ~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~ 85 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888777776654321 11235556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 178 IQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 178 L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
+..+.+....+...+.+++....++
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665555555554433
No 44
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=84.68 E-value=11 Score=28.50 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 014013 187 SLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNA 221 (432)
Q Consensus 187 ~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~ 221 (432)
.+..++..++.....+.-.-.+++..+..+..|+.
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~ 80 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334434443333333333333334444444433
No 45
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.58 E-value=14 Score=29.46 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 154 NEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 154 ~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
..+.++..+.|..|....+.-+..|.+|.+.+...... ...+...|...-+.+...+.++..+++.|..
T Consensus 37 ~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~---vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 37 KQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRD---VQEQMAVLMQSREQVSEELVRLQKDNDSLQG 105 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 34556677888888888888888888888877665544 4566677777777888888888888888873
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.82 E-value=23 Score=34.18 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=27.2
Q ss_pred HhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 014013 342 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKT 388 (432)
Q Consensus 342 ~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~ 388 (432)
..+..++++.++.-|+..+..-...+...+..|+....+|..||..|
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555556666666666666666666
No 47
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.55 E-value=7.1 Score=32.17 Aligned_cols=104 Identities=16% Similarity=0.222 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014013 122 LRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRER-------ELPLVQEVDAKVKELRQTIQD-LNKHQVSLRTTLN 193 (432)
Q Consensus 122 ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~-------~~~~i~el~~e~~eLe~~L~~-l~~~q~~l~~~~~ 193 (432)
.+.-+..|..++.+...+...+..+..++..+...... .+.....+..+..+|.+.|-+ .|+--..-+.+..
T Consensus 20 ~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~ 99 (135)
T 2e7s_A 20 QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKY 99 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666665555433333333333333333333 333334444444444444322 2222233344555
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 194 KLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 194 ~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
.+..+...+..++.+....+..+..+...|+.
T Consensus 100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666655555555543
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.10 E-value=13 Score=28.20 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
..+..|.++...|..+..........+...+.+|...|
T Consensus 42 ~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l 79 (89)
T 3bas_A 42 EQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEV 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 49
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=82.95 E-value=15 Score=28.65 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 123 s~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
.+|..+...++.+.....++...++..+.....+....+..+..|..++..++.++..+... +...+....+.
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~-------L~ea~~kLee~ 77 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEE-------LHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 44555555666666666666666666655555555444444445545555444444444333 33333333333
Q ss_pred HHHhhhhHHHHHHHHHHH
Q 014013 203 DEKFSQTEFDLVQSVQQN 220 (432)
Q Consensus 203 ~~~l~~~~~~l~~l~~e~ 220 (432)
.......+..+..+...+
T Consensus 78 ek~~~~aE~ev~~L~Rri 95 (101)
T 3u1c_A 78 EENAAKAESEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 50
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=80.99 E-value=19 Score=28.44 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=54.0
Q ss_pred CCCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 108 RPDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS 187 (432)
Q Consensus 108 ~P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~ 187 (432)
-|.+.++. .. ++..+...-...++.+...+..+++++........ ....+.-|+++..-...-...
T Consensus 15 ~~~~~~~~----~~------ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~----~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 15 VPRGSHMA----SM------QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp CCTTCCSS----CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHhh----HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcc
Confidence 46666666 33 14444444455555555566666666654443211 223466777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 188 LRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 188 l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
-++..+++..++.+|..++..+...
T Consensus 81 ERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 81 ERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHH
Confidence 7777777777777776666554433
No 51
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.61 E-value=33 Score=33.09 Aligned_cols=43 Identities=9% Similarity=0.104 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 296 IEKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQL 338 (432)
Q Consensus 296 ~e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~ 338 (432)
+++.+.-++.++++.=..++.|+.-+..+..++++|+..++-.
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544456777777888888888887777443
No 52
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=80.39 E-value=18 Score=30.33 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 146 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 146 l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
|+.++..+..+.......+.+...-++.+..++..|+-+...+......++.++..|..+.
T Consensus 73 L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 73 LQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444555555555555555555555555665555554443
No 53
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=80.28 E-value=26 Score=29.61 Aligned_cols=102 Identities=23% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHH
Q 014013 303 LKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEK---ERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVT 379 (432)
Q Consensus 303 ~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~---~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~ 379 (432)
+...+...|.+++.|+..-.....+-...++++..+.. ++..|.+.+.+....|..++ +..+..+.....
T Consensus 47 LEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~i-------d~lEd~L~~~Ke 119 (155)
T 2efr_A 47 LEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI-------DDLEDELYAQKL 119 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 33344444455555655555555444444444433321 22223333333333222222 222233333333
Q ss_pred HHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 014013 380 EVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQ 415 (432)
Q Consensus 380 ~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~ 415 (432)
+...+..++... -.++..+...||.|.+.|..
T Consensus 120 k~~~i~~eLd~t----l~el~~~~~~~~~~~~~~~~ 151 (155)
T 2efr_A 120 KYKAISEEMKQL----EDKVEELLSKNYHLENEVAR 151 (155)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHhcccchHHHHHHHHH
Confidence 333333333333 34455556666666665543
No 54
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.27 E-value=7.4 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 189 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 189 ~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
.+++......+.++..+|.+....+..++.+++++++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444555566666666666666677777777766
No 55
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=78.86 E-value=17 Score=26.66 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
+.+..+|.+|-..-..|+-....|-+.++++..++
T Consensus 12 EnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~ 46 (77)
T 2w83_C 12 ENLILENTQLLETKNALNIVKNDLIAKVDELTCEK 46 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33344444443333333333333333333333333
No 56
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.47 E-value=20 Score=27.41 Aligned_cols=81 Identities=20% Similarity=0.147 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 014013 134 EQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDL 213 (432)
Q Consensus 134 eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l 213 (432)
......++-+...+..|++++....... .....+.-|++...-...-...-++..+++..++.+|...+..+...+
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~----~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~ 84 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHK----IVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3334444455555666666665433222 222455667777777777777777777777777777766666555554
Q ss_pred HHHHH
Q 014013 214 VQSVQ 218 (432)
Q Consensus 214 ~~l~~ 218 (432)
..+..
T Consensus 85 ~~L~~ 89 (94)
T 3jsv_C 85 NKLKV 89 (94)
T ss_dssp C----
T ss_pred HHHHH
Confidence 44443
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.46 E-value=15 Score=29.62 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKH 184 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~ 184 (432)
..+.|.++...+..|+.+|.+-+..
T Consensus 38 ~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 38 SQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655544
No 58
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=77.75 E-value=24 Score=27.82 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 014013 189 RTTLNKLKEKTGALDEKFSQTEFDLVQSV 217 (432)
Q Consensus 189 ~~~~~~~k~e~~el~~~l~~~~~~l~~l~ 217 (432)
+.++..=......+..+++++...+..+.
T Consensus 75 ~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 75 KADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 33333333444444444444433333333
No 59
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.60 E-value=14 Score=30.03 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHH
Q 014013 375 EAVVTEVDAITSKTKFVKESGAA---KLQELASKAEEIVEKFQQYT 417 (432)
Q Consensus 375 e~~~~~i~~ie~~~~~~k~~~e~---ei~~~~~~~~~L~~~i~~Y~ 417 (432)
......+..++.++..++...+. |.+.+.+-...|.-.|.-|.
T Consensus 78 ~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYR 123 (129)
T 3tnu_B 78 KDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYR 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666555442 33445555555666666664
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.42 E-value=13 Score=30.42 Aligned_cols=44 Identities=5% Similarity=0.123 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 014013 375 EAVVTEVDAITSKTKFVKESGAA---KLQELASKAEEIVEKFQQYTN 418 (432)
Q Consensus 375 e~~~~~i~~ie~~~~~~k~~~e~---ei~~~~~~~~~L~~~i~~Y~~ 418 (432)
......+..++.++..++...+. |.+.+.+-...|.-.|.-|..
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666555443 344455555566666666653
No 61
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.30 E-value=25 Score=27.28 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 014013 123 RPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 181 (432)
Q Consensus 123 s~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l 181 (432)
.+|-.+...++.+.....++...++..+..........+..+..+...+..++..+...
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666655555444444444444444444444444433
No 62
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=75.99 E-value=28 Score=27.65 Aligned_cols=96 Identities=10% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 394 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~ 394 (432)
+.|+.+...+...++.|+.++.....++...+..++..+..|+.....+...+...+...+.++..-. -+..--+.
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R----~t~~SLeD 81 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR----ATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH----HHHhhHHH
Confidence 34555555556666666666666666666566666666666666665544333332222222222222 22233344
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 014013 395 GAAKLQELASKAEEIVEKFQ 414 (432)
Q Consensus 395 ~e~ei~~~~~~~~~L~~~i~ 414 (432)
++...+.+...-..|.+.+.
T Consensus 82 ~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 82 FEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443
No 63
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=75.98 E-value=22 Score=26.41 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhc
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQ 229 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~ 229 (432)
.+..+++.|+-++.++.....+....+..-| ..|..+...+..-..++.+|+++++.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK-------~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK-------AEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3444445555555555544444444444444 44444555555555666666666653
No 64
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=75.74 E-value=34 Score=28.57 Aligned_cols=98 Identities=23% Similarity=0.321 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKES 394 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~ 394 (432)
+.|+.+-..-..++..|+.++.. +....+++-.++.++..-+..+..++++...+.+....++..++.++..+
T Consensus 41 k~lE~r~~~deEr~~~lE~qLke----ak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~--- 113 (147)
T 2b9c_A 41 KVIESRAQKDEEKMEIQEIQLKE----AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV--- 113 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHhhhcccHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44444444555555555555442 22333344444554444444555555555666666666666666666555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 395 GAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 395 ~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
-+.++.+...-.+-...-..|-..|
T Consensus 114 -~~nlKsLE~~eekas~rE~~yee~I 138 (147)
T 2b9c_A 114 -TNNLKSLEDKVEELLSKNYHLENEV 138 (147)
T ss_dssp -HHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred -HHHHHhhHHhHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=75.53 E-value=29 Score=27.60 Aligned_cols=82 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 146 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 146 l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
|+.++.....-....+........-+..|..-|.+.+... ...+.++..++..|..+|.++..++.+++.+...|..
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q ss_pred hhhcC
Q 014013 226 KIVQS 230 (432)
Q Consensus 226 ~iv~S 230 (432)
+|..+
T Consensus 107 r~~~~ 111 (121)
T 3mq7_A 107 RIADK 111 (121)
T ss_dssp HHC--
T ss_pred Hhhhc
No 66
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.73 E-value=27 Score=26.95 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 014013 124 PIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTI 178 (432)
Q Consensus 124 ~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L 178 (432)
.+..++..+..+...+..++..|...+.+-+..+...+.....+..+..+|.+.|
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333333344444444444333
No 67
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=74.70 E-value=31 Score=27.68 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHh
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESK 363 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~ 363 (432)
+..++..+...++.|...-++.=...++..+.+.++++....-+..+
T Consensus 7 i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i 53 (119)
T 3etw_A 7 LVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNEL 53 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666665555554455556666666666555555444
No 68
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=74.60 E-value=30 Score=27.43 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 146 LNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 146 l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
|+.++..++.........+.+++..|+.|+..-+........+...++..-+++.=|...|
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El 100 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESEL 100 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444444444444444444443333333
No 69
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=74.53 E-value=38 Score=28.48 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPE 232 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe 232 (432)
.+.-+...|..|++++.+.+.....|..-...++....+.+..+++....+.++.+-..+|++.+..-|+
T Consensus 80 A~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPD 149 (152)
T 4fla_A 80 ACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSLPD 149 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 3456778899999999999999999999999999999999999999999999999999999999888775
No 70
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=74.41 E-value=37 Score=28.39 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=35.5
Q ss_pred HHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013 353 FENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLP 425 (432)
Q Consensus 353 ~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~ 425 (432)
+..++..+..+..++..+.+.++.+.+++..+..+...+ +.....+..++..|+.-.=.|+..=+.+|+
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l----E~kl~kLq~EN~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL----QQKLSDLKKEHSQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444555555555555555555555 555666666666666555444444444443
No 71
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.73 E-value=23 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=16.4
Q ss_pred HhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 014013 342 RNLKSEDATRAFENVKLEMESKRQDLEARQKKVE 375 (432)
Q Consensus 342 ~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie 375 (432)
....++..+..+..+..+......+++..-.+..
T Consensus 35 ~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 35 LAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555544333333
No 72
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=72.22 E-value=7.5 Score=26.49 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 189 RTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 189 ~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
...+.++|+-+..|..++.++++...+-.+|+++|..-+
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888999999999999999999999998755
No 73
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.87 E-value=22 Score=26.39 Aligned_cols=30 Identities=3% Similarity=0.268 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEK 198 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e 198 (432)
..+..++..|.+-+..+..+..++..+-+.
T Consensus 27 ~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 27 HQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333333333
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=71.69 E-value=30 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhHhhHHHHHH
Q 014013 348 DATRAFENVKLEMESKRQDLEAR 370 (432)
Q Consensus 348 e~~~~~~~l~~e~~~~~~e~~~~ 370 (432)
.++..+..+..+...++.+++..
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 75
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=71.57 E-value=36 Score=28.41 Aligned_cols=42 Identities=19% Similarity=0.094 Sum_probs=18.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el 241 (432)
.+...+..++.-.+.-+..+.++...+...++.++...-+++
T Consensus 69 eeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 69 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444333333
No 76
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.54 E-value=86 Score=30.93 Aligned_cols=23 Identities=17% Similarity=0.253 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014013 315 KSLEAKLIERQGKVEQLDELQQQ 337 (432)
Q Consensus 315 ~~l~~ql~~~~~k~~~l~~~~~~ 337 (432)
..||++|.+.++.+.+++.+...
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhh
Confidence 55777788888887777766554
No 77
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.94 E-value=37 Score=26.10 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 175 RQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 175 e~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
+.+|..+...-..+..++..+..+...+...|.
T Consensus 10 ~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 10 QRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333333333333333333333333333333333
No 78
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=68.90 E-value=50 Score=27.59 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 131 RLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVS 187 (432)
Q Consensus 131 ~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~ 187 (432)
.++.+...+...+..+...+..+........+.+..|...|+.|+.++.++......
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~ 82 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQQDYDL 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343444444444433333333333444555566666666666666555544433
No 79
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=67.76 E-value=42 Score=26.20 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 014013 141 DKISQLNAEIAAYN 154 (432)
Q Consensus 141 ~~i~~l~~~i~~~~ 154 (432)
.....+..++..+.
T Consensus 24 ~~~~~l~~~i~~l~ 37 (112)
T 1l8d_A 24 QRIGELKNKIGDLK 37 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 80
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=67.68 E-value=1e+02 Score=30.73 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=9.4
Q ss_pred cCCCCCCCcccccCCCCCcch
Q 014013 95 VNCPMNFTLKDLIRPDATRTE 115 (432)
Q Consensus 95 ~gv~~DFt~~Dl~~P~~~R~~ 115 (432)
|... |=.|..+. |+.=.+.
T Consensus 70 c~~~-~~~~G~~C-PTtC~l~ 88 (464)
T 1m1j_B 70 CKHP-LDELGVLC-PTGCELQ 88 (464)
T ss_dssp EECS-STTTCEEE-ECTTHHH
T ss_pred cccc-CCCccCcC-CCccHHH
Confidence 4444 44454444 7753333
No 81
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=67.49 E-value=1e+02 Score=30.53 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 297 EKDYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLE 339 (432)
Q Consensus 297 e~~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~ 339 (432)
++.+.-++.++++.=..++.|+..+..+..++++|+.....+.
T Consensus 117 e~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 117 RRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555444567777777777777777777666543
No 82
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=66.98 E-value=30 Score=28.66 Aligned_cols=56 Identities=13% Similarity=0.025 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHH
Q 014013 186 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEK 241 (432)
Q Consensus 186 ~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el 241 (432)
..+..+......-+..+...+..+...+..+..+..+|.....-|...-++.-.++
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDL 124 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDL 124 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444555555555555566666666777666655544444333344
No 83
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=66.71 E-value=36 Score=25.13 Aligned_cols=30 Identities=20% Similarity=0.389 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 173 ELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 173 eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
.|+.-+..|...+..+...+.-++....+|
T Consensus 43 KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 43 KLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443
No 84
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=66.68 E-value=30 Score=26.89 Aligned_cols=15 Identities=27% Similarity=0.164 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHhh
Q 014013 212 DLVQSVQQNADLRSK 226 (432)
Q Consensus 212 ~l~~l~~e~~~L~~~ 226 (432)
.+..+..||++|+.+
T Consensus 76 ~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 76 DHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 85
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=65.56 E-value=1.1e+02 Score=30.48 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014013 316 SLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 395 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~ 395 (432)
.-|.+|...|..+.+++..-...+...+...++.+++=++++.|-+.+.+..+......+. +..++..+.+..+..
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~---~l~kY~~dlakY~~~- 81 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEA---KLAKYQADLAKYQKD- 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-
Confidence 3467777888888888877777777888888888887777777777766555555444443 333344444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 396 AAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 396 e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
.++.+.-...|..=...+...+.++
T Consensus 82 ~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 82 LADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443
No 86
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=64.20 E-value=23 Score=23.58 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 191 TLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 191 ~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.+.++|.-...+..++.++++.....++|+.+|+.-+
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 4456666667777777888888888888888887654
No 87
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=64.03 E-value=69 Score=27.38 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
.++.+...+..|...|..+......|...+.......-++..+++.+.-.+..+....+.--
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl 151 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45667778889999999999999999999998888888888888888888777777666544
No 88
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.53 E-value=51 Score=25.35 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 014013 129 LTRLDEQR 136 (432)
Q Consensus 129 ~~~f~eer 136 (432)
|.+++.++
T Consensus 19 YE~~h~Er 26 (104)
T 3s9g_A 19 YERYHTES 26 (104)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 89
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=62.29 E-value=62 Score=29.18 Aligned_cols=61 Identities=13% Similarity=0.283 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQD 180 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~ 180 (432)
+....|..++.-+.-++.-...+|.++-..|+.+...+.....++..++.+--.|+..|..
T Consensus 156 k~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~ 216 (242)
T 3uux_B 156 SFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQ 216 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 5666666767777666666667777776666666665554444444444444444444433
No 90
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=61.46 E-value=18 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 014013 193 NKLKEKTGALDEKFSQTEFDLVQSV 217 (432)
Q Consensus 193 ~~~k~e~~el~~~l~~~~~~l~~l~ 217 (432)
..++++...++..+..+.|++..++
T Consensus 5 aalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555444443
No 91
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=61.28 E-value=25 Score=30.35 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Q 014013 372 KKVEAVVTEVDAITSKTKFVKESGAAKLQ 400 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~ 400 (432)
..|..+.+++..+..++...+.++..++.
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666665543
No 92
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=60.93 E-value=1e+02 Score=28.37 Aligned_cols=29 Identities=7% Similarity=0.331 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 014013 120 NLLRPIAEDLTRLDEQRSEL-EDKISQLNA 148 (432)
Q Consensus 120 ~~ls~iin~~~~f~eer~~l-~~~i~~l~~ 148 (432)
.-+..+..+|..|..+-... ..++..+..
T Consensus 39 ~~v~~l~~~~~~f~~el~~~~~~~v~~v~~ 68 (323)
T 3edv_A 39 EHVTMLQERFREFARDTGNIGQERVDTVNH 68 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44556666677776654442 344444433
No 93
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=60.92 E-value=59 Score=25.54 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHhhHhhHHHHH
Q 014013 345 KSEDATRAFENVKLEMESKRQDLEA 369 (432)
Q Consensus 345 ~~~e~~~~~~~l~~e~~~~~~e~~~ 369 (432)
++.+-...++.++.++.....++..
T Consensus 48 k~~eq~~~le~lk~eL~~~~~el~~ 72 (107)
T 2no2_A 48 KTQEQLEVLESLKQELATSQRELQV 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555444444443
No 94
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=60.56 E-value=61 Score=25.67 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 014013 383 AITSKTKFVKESGAAKLQELASKAEEIVEKF 413 (432)
Q Consensus 383 ~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i 413 (432)
+.+.+|++++..|...+++++.+|..-...+
T Consensus 65 e~e~E~ae~k~KYD~~lqe~ese~~~kkK~l 95 (115)
T 3vem_A 65 ELERKMAEVQAEFRRKFHEVEAEHNTRTTKI 95 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666655544444
No 95
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.42 E-value=1.4e+02 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQQ 337 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~ 337 (432)
++.|-..-+.-+-.|...++.
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ 436 (471)
T 3mq9_A 416 VEAQAATANHTVMALMASLDA 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcchhHHHHHHHHHH
Confidence 333333333333334344433
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.36 E-value=61 Score=24.96 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDL 181 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l 181 (432)
|..++++...++..+.....++..+..............+.....++.+|.+|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555554444444444444444444433333333333334444444444433
No 97
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=58.30 E-value=83 Score=26.45 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 014013 143 ISQLNAEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFD 212 (432)
Q Consensus 143 i~~l~~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~ 212 (432)
+.++...++....+.+.....+.+|..+...+-..|+.|...-......-+.|..++..|..++.++...
T Consensus 23 vaR~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~R 92 (155)
T 2efr_A 23 VARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 92 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444433333344444445555555444444433
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.22 E-value=11 Score=23.34 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=14.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
+.|.++++++-.....+..++++|++.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3444444444444455555555555443
No 99
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=57.61 E-value=43 Score=22.96 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 014013 196 KEKTGALDEKFSQTEFDLVQSVQQNADL 223 (432)
Q Consensus 196 k~e~~el~~~l~~~~~~l~~l~~e~~~L 223 (432)
+.+...+...+..+...+..+..+|..+
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 100
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=55.23 E-value=23 Score=28.47 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=52.9
Q ss_pred HHHHHHHhhcCcC-CCChhhcCCCChhHHHHHHHHHHHHhccCCCCchhhhcHHHhhcCCCchhHHHHHHHHHHHHHHHH
Q 014013 12 TEIVTILTETEIA-VITENDLKNPNPDFVSDLYTRLLIFLDVLHEDDQGQLDFAALEQLENPDLHVRSVQIMKLYSMVKE 90 (432)
Q Consensus 12 ~eIv~~L~~~~~~-~~t~~dl~kPt~~~v~~ly~~~l~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~s~~~l~~~~~~~~ 90 (432)
.+|..+|...|++ .+|...|..||.--...||..++..++-. ..+. +.-+++- +-.
T Consensus 21 ~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~-~~~~-------------~~~~eee---------v~~ 77 (120)
T 2igp_A 21 RQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPS-YELP-------------DTKFEEE---------VPR 77 (120)
T ss_dssp HHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTT-CCCC-------------CTTHHHH---------HHH
T ss_pred HHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCC-CccC-------------CCChHHH---------HHH
Confidence 5788889988885 48999999999998888888888666522 1110 0011111 126
Q ss_pred HHHHcCCCCCCCcccccCCCCCcch
Q 014013 91 VVTTVNCPMNFTLKDLIRPDATRTE 115 (432)
Q Consensus 91 ~~~~~gv~~DFt~~Dl~~P~~~R~~ 115 (432)
+|+.+|.|-..|-+-|..|.+..+-
T Consensus 78 ~lK~L~YP~~isKS~L~a~g~pHsW 102 (120)
T 2igp_A 78 IFKDLGYPFALSKSSMYTVGAPHTW 102 (120)
T ss_dssp HHHHTTCCSCCCHHHHHTTTSTTTH
T ss_pred HHHHcCCCceeCHHHhcCCCCCccH
Confidence 6777888733444567777766654
No 101
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=53.96 E-value=86 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 385 TSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 385 e~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
..+|+.+++.+..++..+......|.+.+..|...-
T Consensus 40 n~eI~~ik~~~~~~~~~l~~~i~~l~~~l~~y~e~~ 75 (171)
T 2p2u_A 40 NEAIDAAKARASQKSAPLLARRKELEDGVATFATLN 75 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356668899999999999999999999999998754
No 102
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=53.42 E-value=1.8e+02 Score=28.96 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=25.8
Q ss_pred CCHHHHHHHHhhcCc-CCCChhhc-----CCCChhHHHHH
Q 014013 9 LSATEIVTILTETEI-AVITENDL-----KNPNPDFVSDL 42 (432)
Q Consensus 9 l~~~eIv~~L~~~~~-~~~t~~dl-----~kPt~~~v~~l 42 (432)
+++.+|+.+|..|+- ..++.+.| --||++-+..|
T Consensus 110 ~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l 149 (483)
T 2j1d_G 110 LSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLL 149 (483)
T ss_dssp CCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHH
T ss_pred CCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHH
Confidence 789999999999975 45776655 46888776654
No 103
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=53.23 E-value=22 Score=21.59 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=17.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 199 TGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 199 ~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
.+.+.++++++-.....+..|+++|++-
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455556666666666666666666654
No 104
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=52.47 E-value=68 Score=23.67 Aligned_cols=18 Identities=11% Similarity=0.338 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014013 185 QVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 185 q~~l~~~~~~~k~e~~el 202 (432)
+..+..-+.+++.+..++
T Consensus 41 ~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 41 HQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 105
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=52.26 E-value=94 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 126 AEDLTRLDEQRSELEDKISQLNAEIAAYN 154 (432)
Q Consensus 126 in~~~~f~eer~~l~~~i~~l~~~i~~~~ 154 (432)
+.++..+.+++..+..+++.++.+...+.
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~s 58 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIA 58 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555444443
No 106
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=51.99 E-value=71 Score=23.74 Aligned_cols=24 Identities=4% Similarity=0.242 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhhHhhHHHHHH
Q 014013 347 EDATRAFENVKLEMESKRQDLEAR 370 (432)
Q Consensus 347 ~e~~~~~~~l~~e~~~~~~e~~~~ 370 (432)
..++..+..+..+....+.+++..
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 107
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=51.93 E-value=65 Score=23.37 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHH
Q 014013 356 VKLEMESKRQDLEARQKKVEAVVTEVDAI 384 (432)
Q Consensus 356 l~~e~~~~~~e~~~~~~~ie~~~~~i~~i 384 (432)
|+.....+..++..++..|+...+++...
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L~ek 52 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELELDQK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444433
No 108
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=51.46 E-value=25 Score=21.27 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=15.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
+.|.++++++-.....+..|+++|++-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445555555555566666666666643
No 109
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=50.74 E-value=81 Score=24.08 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 176 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 176 ~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
..+.-|+.+-.-...++..=......+..+.+++...+..+..++.+|.+
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555566666666666666666666666666665555543
No 110
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=49.50 E-value=22 Score=24.25 Aligned_cols=17 Identities=6% Similarity=0.319 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDL 181 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l 181 (432)
+.|..+|.+|+.++..|
T Consensus 22 eaLk~E~~eLk~k~~~L 38 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAI 38 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 111
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=48.93 E-value=1.1e+02 Score=30.76 Aligned_cols=27 Identities=7% Similarity=0.184 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 126 AEDLTRLDEQRSELEDKISQLNAEIAA 152 (432)
Q Consensus 126 in~~~~f~eer~~l~~~i~~l~~~i~~ 152 (432)
+.++..+.+++..+..+++.|+.+...
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~ 58 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNS 58 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555444444444333
No 112
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=48.38 E-value=94 Score=24.14 Aligned_cols=6 Identities=33% Similarity=0.484 Sum_probs=2.2
Q ss_pred HHHHHH
Q 014013 129 LTRLDE 134 (432)
Q Consensus 129 ~~~f~e 134 (432)
.+.+..
T Consensus 18 nAQLDN 23 (103)
T 4h22_A 18 NAQLDN 23 (103)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 333333
No 113
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=48.24 E-value=76 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 171 VKELRQTIQDLNKHQVSLRTTLNKL 195 (432)
Q Consensus 171 ~~eLe~~L~~l~~~q~~l~~~~~~~ 195 (432)
+..++..|.+-+..|..+..++..+
T Consensus 23 v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 23 LSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 114
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.12 E-value=97 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 129 LTRLDEQRSELEDKISQLNAEIAAYNE 155 (432)
Q Consensus 129 ~~~f~eer~~l~~~i~~l~~~i~~~~~ 155 (432)
+..+.+++..+..+++.++.+...+..
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444433
No 115
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=46.84 E-value=29 Score=23.60 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHh
Q 014013 192 LNKLKEKTGALDEKF 206 (432)
Q Consensus 192 ~~~~k~e~~el~~~l 206 (432)
++.++.++.+|..++
T Consensus 21 ~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 21 IELLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 116
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=46.36 E-value=98 Score=23.76 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=24.7
Q ss_pred HHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 379 TEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSI 420 (432)
Q Consensus 379 ~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m 420 (432)
.+|+.++.+|+.+ +..+...+.+..+..-|.+..+.|-+.+
T Consensus 54 ~EI~~L~~eI~~L-E~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 54 EEIARLSKEIDQL-EKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555444 3345555667777777777777776655
No 117
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=46.01 E-value=33 Score=20.85 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 199 TGALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 199 ~~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
.+.|.++++++-..-..+..++.+|++-
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445555555555555556666666654
No 118
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.30 E-value=27 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.|.++++++-..-..+..|+++|++-+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344555555555556666666666543
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.26 E-value=58 Score=20.84 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh
Q 014013 206 FSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 206 l~~~~~~l~~l~~e~~~L~~~i 227 (432)
-..++.-+.+++.++.+|...+
T Consensus 26 eqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666666554
No 120
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=45.11 E-value=1.1e+02 Score=24.12 Aligned_cols=59 Identities=12% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHH
Q 014013 318 EAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEA 376 (432)
Q Consensus 318 ~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~ 376 (432)
..+...+..+++.-+..+..++..-.+-..+.+..|..|...++.+..++.+.+.+.+.
T Consensus 44 k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 44 SHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 33444444455555555555555555555555566666666666665555555444443
No 121
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=44.63 E-value=2.4e+02 Score=27.85 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014013 344 LKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVK 392 (432)
Q Consensus 344 ~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k 392 (432)
+..++++.++.-|+.-+..-..-+...+..++....+|..||..|....
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455444444444444444455555555566666655555443
No 122
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=44.29 E-value=1.3e+02 Score=30.22 Aligned_cols=8 Identities=13% Similarity=0.011 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 014013 132 LDEQRSEL 139 (432)
Q Consensus 132 f~eer~~l 139 (432)
+.+++..+
T Consensus 75 ld~~~r~~ 82 (501)
T 1wle_A 75 TWQELRQL 82 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=44.28 E-value=80 Score=23.22 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQT 209 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~ 209 (432)
++.+|+.+..-.+..|.+|+.........++.+..+...|..++.++
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444555555555555555555555555555555443
No 124
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=44.25 E-value=27 Score=24.08 Aligned_cols=48 Identities=23% Similarity=0.386 Sum_probs=26.7
Q ss_pred CCcccccCCCCCcc-h----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 101 FTLKDLIRPDATRT-E----DTKMNLLRPIAEDLTRLDEQRSELEDKISQLNA 148 (432)
Q Consensus 101 Ft~~Dl~~P~~~R~-~----~~~~~~ls~iin~~~~f~eer~~l~~~i~~l~~ 148 (432)
+|..||.+....+- + ++-=.+|..++..|..+..+...+.+++..++.
T Consensus 3 lTp~dI~~k~F~~~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 3 LTPNDIHNKTFTKSFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp CCHHHHTTCCCCEETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCHHHHhhCcCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556655554432 2 222356667777787777777766666665544
No 125
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=43.73 E-value=72 Score=21.47 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q 014013 197 EKTGALDEKFSQTEFDLVQSVQQNAD 222 (432)
Q Consensus 197 ~e~~el~~~l~~~~~~l~~l~~e~~~ 222 (432)
.++..|..-|......|..++.++++
T Consensus 23 ~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 23 ARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444443
No 126
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.67 E-value=89 Score=23.31 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~ 207 (432)
.+...+..++.+|..++........+|..+-.-|-.|...|.
T Consensus 32 ~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 32 TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444445544444444444444444444444444443
No 127
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.45 E-value=18 Score=22.27 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
.|.++++++-.....+..++.+|++-+
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344444444444445555555555433
No 128
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=43.32 E-value=1.1e+02 Score=23.67 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=22.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 014013 199 TGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 236 (432)
Q Consensus 199 ~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~ 236 (432)
..+|...+...+..++.+.+....-......+|+.+..
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK 74 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNK 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 34444455555555666666666666667777776653
No 129
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=42.98 E-value=1.4e+02 Score=25.80 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 014013 346 SEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAITSKTKFVKESG 395 (432)
Q Consensus 346 ~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~ 395 (432)
++.+-.-+..|..|...+.++++.++.+++....++..++.++.......
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 33333444555555555555666666666666666665555554444333
No 130
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.75 E-value=41 Score=20.33 Aligned_cols=27 Identities=7% Similarity=0.145 Sum_probs=14.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
+.+.++++++-..-..+..++++|++-
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344445555555555556666666543
No 131
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=42.72 E-value=1.2e+02 Score=23.55 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=14.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 014013 391 VKESGAAKLQELASKAEEIVEKF 413 (432)
Q Consensus 391 ~k~~~e~ei~~~~~~~~~L~~~i 413 (432)
.....+.++..+..+..+|...+
T Consensus 69 a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 69 ARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666654
No 132
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.12 E-value=2.7e+02 Score=27.68 Aligned_cols=17 Identities=12% Similarity=0.448 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014013 139 LEDKISQLNAEIAAYNE 155 (432)
Q Consensus 139 l~~~i~~l~~~i~~~~~ 155 (432)
+...+.+|+..++++.+
T Consensus 98 V~~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhh
Confidence 34444445554444443
No 133
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.90 E-value=75 Score=21.17 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEK 198 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e 198 (432)
++-+..+|..|+.+|..-..+...++.+...+|+-
T Consensus 12 Ve~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 12 VEALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 34444555555555555555555555544444433
No 134
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=41.50 E-value=2.1e+02 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHH
Q 014013 197 EKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREE 247 (432)
Q Consensus 197 ~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~ 247 (432)
.....+...|......+..+......|-..-..+++.++..+.++...-..
T Consensus 149 ~~h~~l~~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~l~~L~~~w~~ 199 (322)
T 1u4q_A 149 KKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKE 199 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555544455677777777777665433
No 135
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=41.42 E-value=77 Score=21.13 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 186 VSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 186 ~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
.++...++.++.++.-|..+|.+-...+..++.|-..++.
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKe 45 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKE 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHH
Confidence 3455666667777777777777666666666665555543
No 136
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=41.25 E-value=1.4e+02 Score=30.08 Aligned_cols=31 Identities=13% Similarity=0.333 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRTTLNK 194 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~ 194 (432)
+-++..+...+..++..|+..++++..++..
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 137
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.24 E-value=2.5e+02 Score=27.02 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh---hcCHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI---VQSPEKLQRTLE 239 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i---v~SPe~Lk~~i~ 239 (432)
.++.+...+..|+++|.++......|..++.......-++..+++.+.-.+.++....+..-..+ -.++++++..+.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~~~~i~~~L~ 278 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVRQKKLNEWLG 278 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 55677788888999999999999999999888888888888888888888877777665543222 224555555443
No 138
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=40.88 E-value=16 Score=24.46 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHhhcC
Q 014013 5 DYPRLSATEIVTILTETE 22 (432)
Q Consensus 5 ~fP~l~~~eIv~~L~~~~ 22 (432)
-||..+..+|..||..++
T Consensus 14 MFP~~~~~~ik~~L~~~~ 31 (49)
T 1otr_A 14 MFPAISKSKLQVHLLENN 31 (49)
T ss_dssp HCSSSCHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHcC
Confidence 399999999999999985
No 139
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.88 E-value=1.5e+02 Score=24.26 Aligned_cols=33 Identities=24% Similarity=0.111 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Q 014013 317 LEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRA 352 (432)
Q Consensus 317 l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~ 352 (432)
.+.....+...++.|...+.. +++.+..+++..
T Consensus 65 aE~~~~~ie~ElE~LTasLFe---EAN~MVa~ar~~ 97 (135)
T 2e7s_A 65 AEEEADKLNKEVEDLTASLFD---EANNLVADARME 97 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHHHH---HHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 333444444444444333332 444444444333
No 140
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.76 E-value=60 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNK 183 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~ 183 (432)
++|..+|.+|+.++..|..
T Consensus 33 ~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 141
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.25 E-value=1.6e+02 Score=24.59 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=29.6
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHH
Q 014013 299 DYKSLKARLNDDVVLDKSLEAKLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLE 368 (432)
Q Consensus 299 ~~~~~k~~l~~~~~~~~~l~~ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~ 368 (432)
.+..+...+.+........+.....+...++.|...+.. +++.+..+++..-..+......+...+.
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe---EAN~MVa~ar~~~~~~e~r~~~L~~ql~ 125 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD---EANNMVADARKEKYAIEILNKRLTEQLR 125 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 343444444443333344444555555555555444443 4454555554444444433333333333
No 142
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=39.57 E-value=74 Score=20.42 Aligned_cols=29 Identities=10% Similarity=0.312 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 014013 364 RQDLEARQKKVEAVVTEVDAITSKTKFVK 392 (432)
Q Consensus 364 ~~e~~~~~~~ie~~~~~i~~ie~~~~~~k 392 (432)
.+.+++.+++|+.++.+|..+..+..++.
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555544443
No 143
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.56 E-value=2.3e+02 Score=26.55 Aligned_cols=44 Identities=9% Similarity=0.254 Sum_probs=33.0
Q ss_pred CCCC-CCCHHHHHHHHhhcCcC-CCChhhcCCCCh----hHHHHHHHHHH
Q 014013 4 FDYP-RLSATEIVTILTETEIA-VITENDLKNPNP----DFVSDLYTRLL 47 (432)
Q Consensus 4 ~~fP-~l~~~eIv~~L~~~~~~-~~t~~dl~kPt~----~~v~~ly~~~l 47 (432)
|.|| .=-..||..+|..+|.| .+|...|..|.+ ..+..+..|++
T Consensus 62 ~~~~~~k~eeev~~~lK~L~YP~~isKS~L~a~g~pHsWp~~Lg~L~WLv 111 (315)
T 2ve7_A 62 YELPDTKFEEEVPRIFKDLGYPFALSKSSMYTVGAPHTWPHIVAALVWLI 111 (315)
T ss_dssp CCCCSSCHHHHHHHHHHHTTCSSCCCHHHHHTTTSTTTHHHHHHHHHHHH
T ss_pred CccCCCChHHHHHHHHHHcCCCceeCHHHhcCCCCCCcHHHHHHHHHHHH
Confidence 4554 23468999999999997 678899977754 34777788887
No 144
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=39.52 E-value=1.9e+02 Score=25.04 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTG 200 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~ 200 (432)
.-.|..|..+|..|.++|........+|..++..++....
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455666666666666666555555555555555544443
No 145
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=38.10 E-value=3e+02 Score=26.93 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 316 SLEAKLIERQGKVEQ 330 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~ 330 (432)
.|+.++...+.+++.
T Consensus 109 ~l~~~~~~~~~~i~~ 123 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQ 123 (409)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHH
Confidence 333333333333333
No 146
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=37.76 E-value=3.1e+02 Score=27.14 Aligned_cols=48 Identities=6% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 148 AEIAAYNEVRERELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKL 195 (432)
Q Consensus 148 ~~i~~~~~k~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~ 195 (432)
+.+++.+++.......++.+.+.......+.+..+....++..+...+
T Consensus 356 QRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~ 403 (602)
T 1cii_A 356 QRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENI 403 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433333333
No 147
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.21 E-value=1.5e+02 Score=23.18 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHH
Q 014013 320 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENVKLEMESKRQDLEARQKKVEAVVTEVDAIT 385 (432)
Q Consensus 320 ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l~~e~~~~~~e~~~~~~~ie~~~~~i~~ie 385 (432)
...++..++.++..+...+.++....++.+++.+..=..++..+...++.....-..+...++.++
T Consensus 30 ~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~ 95 (107)
T 2no2_A 30 EKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELE 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555566666666666666555555555555544443333344444333
No 148
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=36.94 E-value=1.4e+02 Score=22.78 Aligned_cols=45 Identities=7% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 014013 174 LRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQ 218 (432)
Q Consensus 174 Le~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~ 218 (432)
-.+++....++...-..+......+.++|..++..++.++.+++.
T Consensus 60 h~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 60 HSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334444444444444455555556666666666666665555443
No 149
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=36.76 E-value=2e+02 Score=27.91 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCHHHHHHHHhhcCcCCCChhhc-----CCCChhHHHHH
Q 014013 9 LSATEIVTILTETEIAVITENDL-----KNPNPDFVSDL 42 (432)
Q Consensus 9 l~~~eIv~~L~~~~~~~~t~~dl-----~kPt~~~v~~l 42 (432)
+++.+|+.+|..|+-..++.+.| --||++-+..|
T Consensus 104 ~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l 142 (402)
T 4eah_A 104 RSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLL 142 (402)
T ss_dssp CCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHH
Confidence 79999999999998656777765 36998877654
No 150
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=36.41 E-value=45 Score=20.31 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=15.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSK 226 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~ 226 (432)
+.+.++.+++-.....+..|+.+|++-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555555555556666666666654
No 151
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=36.25 E-value=2.5e+02 Score=25.59 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 014013 316 SLEAKLIERQGKVEQLDELQQQLEKERN-LKSEDATRAFENVKLEMESKRQDLEARQK 372 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~l~~~~~~~~~~~~-~~~~e~~~~~~~l~~e~~~~~~e~~~~~~ 372 (432)
.+++.+...+.++..|......+....- .....++.++..+......+....+.+..
T Consensus 260 ~~e~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~ 317 (326)
T 3kbt_A 260 AFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAAWQALLDACAGRRT 317 (326)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555433221 12344455555555555544444444333
No 152
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=36.07 E-value=1.6e+02 Score=23.35 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----cchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 140 EDKISQLNAEIAAYNEVRER-----ELPLVQEVDAKVKELRQTIQDLNKHQVS 187 (432)
Q Consensus 140 ~~~i~~l~~~i~~~~~k~~~-----~~~~i~el~~e~~eLe~~L~~l~~~q~~ 187 (432)
..+|.+|...+|.++.+... +.+.+.+...+...|..+|..++..|..
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777776643 4556788888888888888888877663
No 153
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=36.06 E-value=1.3e+02 Score=22.04 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 014013 184 HQVSLRTTLNKLKEKTGALDEKFSQTEFDLV 214 (432)
Q Consensus 184 ~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~ 214 (432)
...+|....+.+.--++.|..+++++..+..
T Consensus 17 EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e 47 (77)
T 2w83_C 17 ENTQLLETKNALNIVKNDLIAKVDELTCEKD 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3333344444444444444444444433333
No 154
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.53 E-value=2.2e+02 Score=28.48 Aligned_cols=27 Identities=7% Similarity=0.021 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 126 AEDLTRLDEQRSELEDKISQLNAEIAA 152 (432)
Q Consensus 126 in~~~~f~eer~~l~~~i~~l~~~i~~ 152 (432)
+.++..+.+++..+..+++.++++...
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~ 62 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINI 62 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555554444333
No 155
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.81 E-value=42 Score=18.81 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Q 014013 194 KLKEKTGALDEKFSQTEFDLVQS 216 (432)
Q Consensus 194 ~~k~e~~el~~~l~~~~~~l~~l 216 (432)
.+++.+..++..+..+++++..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34555555555555555555443
No 156
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.71 E-value=46 Score=20.27 Aligned_cols=26 Identities=8% Similarity=0.110 Sum_probs=13.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
+.+.++++++-..-..+..|+++|++
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 34444555554555555555555554
No 157
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.48 E-value=90 Score=30.52 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALD 203 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~ 203 (432)
++..+++.++.++.+++............+-.+..+++
T Consensus 21 ~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 21 ALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444433334444444444443
No 158
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=34.33 E-value=1.8e+02 Score=23.24 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 014013 320 KLIERQGKVEQLDELQQQLEKERNLKSEDATRAFENV 356 (432)
Q Consensus 320 ql~~~~~k~~~l~~~~~~~~~~~~~~~~e~~~~~~~l 356 (432)
++..+...++.|...=++.=...++..+.+.+.+...
T Consensus 10 ~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L~~~ 46 (119)
T 2avr_X 10 ELQALDAEYQNLANQEEARFNEERAQADAARQALAQN 46 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333344444444433
No 159
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1
Probab=34.30 E-value=1.6e+02 Score=26.23 Aligned_cols=50 Identities=12% Similarity=0.301 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 014013 376 AVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLP 425 (432)
Q Consensus 376 ~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~ 425 (432)
.....+..++.++..+...+..|+.+++.+|..+..-+-.=..++.+.|+
T Consensus 30 ~~l~~L~~iQ~e~~~l~~e~~~ev~~lE~ky~~~~~Ply~kR~eII~~IP 79 (225)
T 2e50_A 30 EAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIP 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhccc
Confidence 34556777888888898899999999999999888876555555555554
No 160
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.42 E-value=1.5e+02 Score=29.68 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLR 189 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~ 189 (432)
+..+...+..++..|+..++++.
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~s 60 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQ 60 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333333
No 161
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.16 E-value=93 Score=19.66 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 014013 210 EFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 210 ~~~l~~l~~e~~~L~~~i 227 (432)
...+.=+..+++.|+..|
T Consensus 30 kdliaylekeianlrkki 47 (49)
T 3he5_A 30 KDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444555666665554
No 162
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.95 E-value=1.5e+02 Score=22.04 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=23.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh------hcCHHHHHHHHHHHHHHHH
Q 014013 206 FSQTEFDLVQSVQQNADLRSKI------VQSPEKLQRTLEEKKSIRE 246 (432)
Q Consensus 206 l~~~~~~l~~l~~e~~~L~~~i------v~SPe~Lk~~i~el~~~l~ 246 (432)
++.+...|..+..+++.|...+ .++|+++.....++...-.
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~ 70 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQ 70 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555 2578888776666654333
No 163
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=32.57 E-value=98 Score=20.35 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTT 191 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~ 191 (432)
..+..|+..+.-|+-....+-++
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae 27 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAE 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 164
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.35 E-value=1.1e+02 Score=30.23 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 125 IAEDLTRLDEQRSELEDKISQLNAEIAAYNEVR 157 (432)
Q Consensus 125 iin~~~~f~eer~~l~~~i~~l~~~i~~~~~k~ 157 (432)
++.++..+.+++..+..+++.++.+...+...+
T Consensus 28 ~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 28 LVDKVLELDKRRREIIKRLEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777777777666655544
No 165
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.16 E-value=1.5e+02 Score=29.38 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLN 193 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~ 193 (432)
-++..+...+..++..|+..++++..++.
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455444444444444443
No 166
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.07 E-value=53 Score=29.91 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=8.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q 014013 202 LDEKFSQTEFDLVQSVQQNADL 223 (432)
Q Consensus 202 l~~~l~~~~~~l~~l~~e~~~L 223 (432)
|...+.++..++..++.|+++|
T Consensus 73 L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444
No 167
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=31.81 E-value=2.7e+02 Score=24.58 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKT 199 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~ 199 (432)
.++.+..++..|+.++.+++.....+.++++.++.+.
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777776666666666666554
No 168
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=31.30 E-value=1.2e+02 Score=22.64 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=21.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhc-CHHH-HHHHHHHH
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRSKIVQ-SPEK-LQRTLEEK 241 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~~iv~-SPe~-Lk~~i~el 241 (432)
.+..++..+...+..+.+++..+.+.+.. +|+. +++.|.-|
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~L 47 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLL 47 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34444555555555555556566555543 3544 45555444
No 169
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.09 E-value=1.5e+02 Score=22.07 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 366 DLEARQKKVEAVVTEVDAITSKTKFVK--ESGAAKLQELASKAEEIVEKFQQYTN 418 (432)
Q Consensus 366 e~~~~~~~ie~~~~~i~~ie~~~~~~k--~~~e~ei~~~~~~~~~L~~~i~~Y~~ 418 (432)
+++.....|+.+..++..|+.+|++-- ..--..+..+..++..+...+...+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555665555555421 01113456666666666665554443
No 170
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=31.04 E-value=3.1e+02 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQ-VSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q-~~l~~~~~~~k~e~~el 202 (432)
+++..+..++...|.-..... ..+...++.++.+..-.
T Consensus 18 ~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py 56 (273)
T 3s84_A 18 EEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPY 56 (273)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666555433322 23444444444444333
No 171
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.05 E-value=1.1e+02 Score=29.99 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 014013 187 SLRTTLNKLKEKTGALDEKFS 207 (432)
Q Consensus 187 ~l~~~~~~~k~e~~el~~~l~ 207 (432)
.+......+..+...+..++.
T Consensus 21 ~l~~~~~~~~~~~~~~~~~l~ 41 (412)
T 3u06_A 21 ELLRCNEQQAAELETCKEQLF 41 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 172
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.76 E-value=67 Score=17.97 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQV 186 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~ 186 (432)
++=+|..|++++..|+....
T Consensus 5 lefendaleqkiaalkqkia 24 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHH
Confidence 34455555555555544433
No 173
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.74 E-value=1.9e+02 Score=22.06 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGAL 202 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el 202 (432)
+.+.+..++.+|..++..-.....+|..+-.-+-.|
T Consensus 42 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 42 SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333334444333333333
No 174
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=28.94 E-value=3e+02 Score=24.22 Aligned_cols=8 Identities=13% Similarity=0.198 Sum_probs=3.6
Q ss_pred hhHHHHHH
Q 014013 120 NLLRPIAE 127 (432)
Q Consensus 120 ~~ls~iin 127 (432)
.+|..+..
T Consensus 125 elfd~~~~ 132 (213)
T 1ik9_A 125 ELIAYALD 132 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 175
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.85 E-value=1.4e+02 Score=20.45 Aligned_cols=42 Identities=10% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Q 014013 366 DLEARQKKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVE 411 (432)
Q Consensus 366 e~~~~~~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~ 411 (432)
.+..+...++.+..++..++.+-..+ ..+|..+..+...|.+
T Consensus 16 ~R~rKk~~~~~Le~~~~~L~~~n~~L----~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 16 SRQKRKVWVQSLEKKAEDLSSLNGQL----QSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 34444444555555555555555444 4444455555544443
No 176
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.82 E-value=1.8e+02 Score=21.53 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 170 KVKELRQTIQDLNKHQVSLRTTLNKLK 196 (432)
Q Consensus 170 e~~eLe~~L~~l~~~q~~l~~~~~~~k 196 (432)
.|...+.+|.+.......|..++..++
T Consensus 39 ~ni~~eskL~eae~rn~eL~~e~~~l~ 65 (81)
T 1wt6_A 39 DNQNFASQLREAEARNRDLEAHVRQLQ 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 177
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.73 E-value=1.4e+02 Score=20.19 Aligned_cols=41 Identities=5% Similarity=0.148 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
+|...++.|-.++..|......++.+....+.+-.....+|
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444444444444444444444443333
No 178
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=28.62 E-value=76 Score=19.29 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=11.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHh
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRS 225 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~ 225 (432)
.|.++++++-..-..+..++++|++
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444555555554
No 179
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=27.43 E-value=1.4e+02 Score=19.81 Aligned_cols=38 Identities=13% Similarity=0.172 Sum_probs=29.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 014013 391 VKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTE 428 (432)
Q Consensus 391 ~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~ 428 (432)
+-...+.=++.+...|..+...|-.=+++|..+|..+|
T Consensus 7 Lt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE 44 (48)
T 3ci9_A 7 LTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLE 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444555677888888999999999999999888776
No 180
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=26.42 E-value=1.5e+02 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.443 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 164 VQEVDAKVKELRQTIQDLNKHQVSLRT 190 (432)
Q Consensus 164 i~el~~e~~eLe~~L~~l~~~q~~l~~ 190 (432)
+-++..+...+..++..++..++++..
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk 56 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAK 56 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555444444443
No 181
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=26.39 E-value=4.4e+02 Score=25.29 Aligned_cols=51 Identities=10% Similarity=0.255 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhh
Q 014013 177 TIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKI 227 (432)
Q Consensus 177 ~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~i 227 (432)
++..+......|...+..+...+..|...|.......-++..+...|++.+
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 444455555566666666666666666666665555556666666665543
No 182
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.32 E-value=2.4e+02 Score=22.17 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHH
Q 014013 201 ALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQ 235 (432)
Q Consensus 201 el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk 235 (432)
+|...|...+..|+.+.+....-......+|+.+.
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevN 60 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELN 60 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 34444444455555555555555566666666654
No 183
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=25.83 E-value=2.3e+02 Score=21.92 Aligned_cols=31 Identities=10% Similarity=0.287 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 163 LVQEVDAKVKELRQTIQDLNKHQVSLRTTLN 193 (432)
Q Consensus 163 ~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~ 193 (432)
.+++-..+...++..+.+|+.....+..-+.
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~ 45 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVE 45 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677777777666665555443
No 184
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=25.75 E-value=45 Score=23.68 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=21.7
Q ss_pred HHHHHHHHhhcCcCCCChhhcCCCC-hhHHHHHHH
Q 014013 11 ATEIVTILTETEIAVITENDLKNPN-PDFVSDLYT 44 (432)
Q Consensus 11 ~~eIv~~L~~~~~~~~t~~dl~kPt-~~~v~~ly~ 44 (432)
|+|....|+..|| |.+++.+|. ..+|..+|.
T Consensus 24 p~eW~~ll~~sGI---s~~~~k~~et~~~I~~F~~ 55 (65)
T 2lnh_A 24 DPELKNLFDMCGI---SEAQLKDRETSKVIYDFIE 55 (65)
T ss_dssp CTTHHHHHHHHTC---CHHHHTCTTTHHHHHHHHH
T ss_pred CHHHHHHHHHcCC---CHHHHHCHHHHHHHHHHHH
Confidence 3567778888886 689998775 566665554
No 185
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=25.30 E-value=31 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCcCCCChhhcC------CCChhHHHHHHHHHH
Q 014013 11 ATEIVTILTETEIAVITENDLK------NPNPDFVSDLYTRLL 47 (432)
Q Consensus 11 ~~eIv~~L~~~~~~~~t~~dl~------kPt~~~v~~ly~~~l 47 (432)
..=|..||.++|+| +|++|+. -=+|.|..++-.|.=
T Consensus 38 AKGifKyL~elGvP-as~~dv~aRg~qegWn~gFT~k~~gWAe 79 (115)
T 2es9_A 38 AKGILKYLHDLGVP-VSPEVVVARGEQEGWNPEFTKKVAGWAE 79 (115)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHhcccccCChhHHHHHHHHHH
Confidence 35689999999997 9999983 246889998888877
No 186
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.77 E-value=2.1e+02 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014013 167 VDAKVKELRQTIQDLNKHQVSL 188 (432)
Q Consensus 167 l~~e~~eLe~~L~~l~~~q~~l 188 (432)
+..++.+|+.++.-......+|
T Consensus 12 le~Ri~~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333333333
No 187
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=24.55 E-value=1.4e+02 Score=22.62 Aligned_cols=37 Identities=11% Similarity=0.143 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Q 014013 372 KKVEAVVTEVDAITSKTKFVKESGAAKLQELASKAEE 408 (432)
Q Consensus 372 ~~ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~ 408 (432)
.+++.++..+-.+|..=..+|..||.||..+..+.+.
T Consensus 50 ~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 50 AEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777778888888888888888877766554
No 188
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=24.20 E-value=1.7e+02 Score=19.66 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 166 EVDAKVKELRQTIQDLNKHQVSLRTTL 192 (432)
Q Consensus 166 el~~e~~eLe~~L~~l~~~q~~l~~~~ 192 (432)
.+.++|..|..-|.....+...|.+++
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 189
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=24.18 E-value=2.1e+02 Score=20.91 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhhhcCH
Q 014013 216 SVQQNADLRSKIVQSP 231 (432)
Q Consensus 216 l~~e~~~L~~~iv~SP 231 (432)
+..++..|+..+.+-|
T Consensus 62 L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 62 LSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHCC
Confidence 3444555555555544
No 190
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=23.93 E-value=1.3e+02 Score=18.33 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=10.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 014013 202 LDEKFSQTEFDLVQSVQQNADLR 224 (432)
Q Consensus 202 l~~~l~~~~~~l~~l~~e~~~L~ 224 (432)
+.++++++-.....+..|+.+|+
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444
No 191
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.88 E-value=79 Score=32.53 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 316 SLEAKLIERQGKVEQ 330 (432)
Q Consensus 316 ~l~~ql~~~~~k~~~ 330 (432)
.|+.||..+...++.
T Consensus 515 ~lq~qL~~L~~el~~ 529 (575)
T 2i1j_A 515 RLHNQLKALKQDLAR 529 (575)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 192
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.56 E-value=2.2e+02 Score=20.84 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 161 LPLVQEVDAKVKELRQTIQDLNKHQVSL 188 (432)
Q Consensus 161 ~~~i~el~~e~~eLe~~L~~l~~~q~~l 188 (432)
...+.+|..+|..|+.++..|......|
T Consensus 42 ~~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 42 QHKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544444433
No 193
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=23.26 E-value=5.5e+02 Score=25.32 Aligned_cols=159 Identities=9% Similarity=0.077 Sum_probs=0.0
Q ss_pred CCCCcchhHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HHhcchhHHHHHHHHHHHH
Q 014013 109 PDATRTEDTKMNLLRPIAEDLTRLDEQRSELEDKI-SQLNAEIAAYNEV------------RERELPLVQEVDAKVKELR 175 (432)
Q Consensus 109 P~~~R~~~~~~~~ls~iin~~~~f~eer~~l~~~i-~~l~~~i~~~~~k------------~~~~~~~i~el~~e~~eLe 175 (432)
|...-+. ..+..+.+.....-..+..+-..+ ..+-..+..+... +.........+........
T Consensus 74 ~e~gtl~----~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~ 149 (486)
T 3haj_A 74 PQYGTVE----KAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKL 149 (486)
T ss_dssp SCCSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 176 QTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSIREEARDAEKLA 255 (432)
Q Consensus 176 ~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~l~~l~~~e~~~ 255 (432)
..+...++.+.....+.+..+...........-....+..++....+....+..+-......+..+..........=...
T Consensus 150 ~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~ 229 (486)
T 3haj_A 150 KEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQV 229 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHH
Q 014013 256 MQSFQEKTTTLEVYQK 271 (432)
Q Consensus 256 l~~~q~~~~~l~~~~k 271 (432)
++.||......-.+.+
T Consensus 230 ~~~lQ~lEeeRi~~lK 245 (486)
T 3haj_A 230 FEQCQQFEEKRLRFFR 245 (486)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 194
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.19 E-value=3.4e+02 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLN 193 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~ 193 (432)
-++..+...+..++..++..++.+..++.
T Consensus 40 ~~ld~~~r~~~~~~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 195
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=23.12 E-value=2.3e+02 Score=20.85 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014013 165 QEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKF 206 (432)
Q Consensus 165 ~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l 206 (432)
......+..++.+|..++........+|..+-.-|-.|...|
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444455555555555544444445544444444444433
No 196
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.90 E-value=2.4e+02 Score=21.13 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhHhh
Q 014013 351 RAFENVKLEMESKR 364 (432)
Q Consensus 351 ~~~~~l~~e~~~~~ 364 (432)
.++..|..-+..+.
T Consensus 85 ~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 85 EQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444443333
No 197
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=22.43 E-value=68 Score=21.93 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 014013 374 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYT 417 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~ 417 (432)
....+++|...+++.+..+-...-|+..+..+...+.+.+..|.
T Consensus 28 laafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 28 LAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 34567777778887778777777788888888888888887773
No 198
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.43 E-value=1.4e+02 Score=20.08 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHH
Q 014013 204 EKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKS 243 (432)
Q Consensus 204 ~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~ 243 (432)
.+-+-++..+..+..++++|+..+...-++.+..-++|-.
T Consensus 5 ~~aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 5 SKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444555566666777777776666555555544444443
No 199
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.42 E-value=1.6e+02 Score=18.81 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 014013 175 RQTIQDLNKHQVSLR 189 (432)
Q Consensus 175 e~~L~~l~~~q~~l~ 189 (432)
..++..|++.-.++.
T Consensus 9 rkkiarlkkdnlqle 23 (52)
T 3he5_B 9 RKKIARLKKDNLQLE 23 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhh
Confidence 333333333333333
No 200
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.37 E-value=2.3e+02 Score=20.74 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=22.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHH
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQR 236 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~ 236 (432)
.+|...+...+..++.+.+....-......+|+.+..
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK 44 (78)
T 2ic6_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNK 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444455555556666666666666666777776653
No 201
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.22 E-value=1.5e+02 Score=18.29 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=10.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHH
Q 014013 200 GALDEKFSQTEFDLVQSVQQNADL 223 (432)
Q Consensus 200 ~el~~~l~~~~~~l~~l~~e~~~L 223 (432)
+.|...|+....++..++++...|
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444444444444444444443
No 202
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=22.04 E-value=1.5e+02 Score=21.50 Aligned_cols=48 Identities=15% Similarity=0.249 Sum_probs=24.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014013 160 ELPLVQEVDAKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQ 208 (432)
Q Consensus 160 ~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~ 208 (432)
..+....+..+-..|..+|..+...-.-.. .+..+|.++-.++++|..
T Consensus 15 ~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~ 62 (76)
T 1zhc_A 15 NNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHS 62 (76)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHH
Confidence 445555555555555555555544322222 555555555555555543
No 203
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.22 E-value=2.7e+02 Score=21.02 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 014013 374 VEAVVTEVDAITSKTKFVKESGAAKLQELASKAEEIVEKFQQYTNSIGTLLPVTE 428 (432)
Q Consensus 374 ie~~~~~i~~ie~~~~~~k~~~e~ei~~~~~~~~~L~~~i~~Y~~~m~~~~~~~~ 428 (432)
+...-.++..+.-++...-..+-...+.+.....+|...++.|-.-|...|..+-
T Consensus 35 LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a~rlYD~lLE~~l~~~~ 89 (91)
T 2pjw_V 35 LQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEIMNIYDRLLEQQLQSIN 89 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445556666666666776777777788889999999999999888888776543
No 204
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.13 E-value=1.5e+02 Score=19.83 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 014013 194 KLKEKTGALDEKFSQT 209 (432)
Q Consensus 194 ~~k~e~~el~~~l~~~ 209 (432)
+++..-.+++.+|+++
T Consensus 29 elkkkweelkkkieel 44 (67)
T 1lq7_A 29 ELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344444444443
No 205
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=20.99 E-value=2.8e+02 Score=21.14 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHhhHhhH
Q 014013 345 KSEDATRAFENVKLEMESKRQ 365 (432)
Q Consensus 345 ~~~e~~~~~~~l~~e~~~~~~ 365 (432)
.+.++++-+++|++++..+.+
T Consensus 73 qi~eAR~ALdaLR~eH~~Klr 93 (98)
T 3f1i_H 73 QIRDARGALSALREEHREKLR 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666778888888865543
No 206
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=20.90 E-value=1.4e+02 Score=17.47 Aligned_cols=25 Identities=16% Similarity=0.389 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 014013 193 NKLKEKTGALDEKFSQTEFDLVQSV 217 (432)
Q Consensus 193 ~~~k~e~~el~~~l~~~~~~l~~l~ 217 (432)
..++++...++..+..+.|++..++
T Consensus 5 aaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555443
No 207
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=20.52 E-value=2.2e+02 Score=19.67 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=18.4
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014013 157 RERELPLVQEVDAKVKELRQTIQDLNKHQVSLRT 190 (432)
Q Consensus 157 ~~~~~~~i~el~~e~~eLe~~L~~l~~~q~~l~~ 190 (432)
....++.|+++..=|..|..+|+-+.+....+..
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3344555666666666666666555554444433
No 208
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=20.31 E-value=3.2e+02 Score=21.53 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhHhhHHHH
Q 014013 350 TRAFENVKLEMESKRQDLE 368 (432)
Q Consensus 350 ~~~~~~l~~e~~~~~~e~~ 368 (432)
.+.+++++..|+.+.++.+
T Consensus 67 e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 67 ERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555566655555444
No 209
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=20.19 E-value=6.3e+02 Score=24.84 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhhcCcCCCChhhc-----CCCChhHHHHH
Q 014013 9 LSATEIVTILTETEIAVITENDL-----KNPNPDFVSDL 42 (432)
Q Consensus 9 l~~~eIv~~L~~~~~~~~t~~dl-----~kPt~~~v~~l 42 (432)
+++.+|..+|..|+-..++.+.| --||++-+..|
T Consensus 100 ~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l 138 (457)
T 3obv_E 100 MPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKML 138 (457)
T ss_dssp CCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHH
Confidence 78999999999998645777765 36888877654
No 210
>3tnf_B LIDA, RAS-related protein RAB-8A; protein transport, vesicular trafficking, GTPase, vesicle recuitment, LCV, DRRA, SIDM; HET: GNP; 2.50A {Legionella pneumophila subsp}
Probab=20.09 E-value=3.5e+02 Score=24.94 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHH
Q 014013 169 AKVKELRQTIQDLNKHQVSLRTTLNKLKEKTGALDEKFSQTEFDLVQSVQQNADLRSKIVQSPEKLQRTLEEKKSI 244 (432)
Q Consensus 169 ~e~~eLe~~L~~l~~~q~~l~~~~~~~k~e~~el~~~l~~~~~~l~~l~~e~~~L~~~iv~SPe~Lk~~i~el~~~ 244 (432)
+.+..|..+|..|.++|..++..|+.|.+-..+..... ..|-.-+|+.|...|+++...
T Consensus 18 ~k~e~L~~rl~kLE~qq~~lt~KY~~Ye~sL~eF~~~s-----------------d~yeal~~e~ine~ie~l~~~ 76 (384)
T 3tnf_B 18 KKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLL-----------------TDSEELSLSEINEKMEAFSKD 76 (384)
T ss_dssp TTTTHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSHHHH-----------------TTCCCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHhc-----------------chhhhcCHHHHHHHHHHHHhh
Confidence 44577889999999999999999988887765543322 345567788888777777543
Done!