Query 014017
Match_columns 432
No_of_seqs 134 out of 1062
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 01:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0113 HemB Delta-aminolevuli 100.0 3E-154 6E-159 1127.7 32.3 325 100-429 4-329 (330)
2 cd04823 ALAD_PBGS_aspartate_ri 100.0 2E-153 4E-158 1127.3 33.6 319 104-428 1-320 (320)
3 PF00490 ALAD: Delta-aminolevu 100.0 2E-153 5E-158 1128.9 29.8 321 102-427 2-324 (324)
4 PRK09283 delta-aminolevulinic 100.0 6E-152 1E-156 1118.2 33.7 320 101-428 3-323 (323)
5 cd00384 ALAD_PBGS Porphobilino 100.0 1E-151 3E-156 1111.4 32.9 313 107-427 1-314 (314)
6 PRK13384 delta-aminolevulinic 100.0 6E-151 1E-155 1109.4 32.7 314 104-426 8-322 (322)
7 cd04824 eu_ALAD_PBGS_cysteine_ 100.0 5E-149 1E-153 1094.7 33.1 312 111-427 5-320 (320)
8 KOG2794 Delta-aminolevulinic a 100.0 8E-139 2E-143 1007.4 30.2 336 87-431 2-340 (340)
9 TIGR03128 RuMP_HxlA 3-hexulose 96.9 0.03 6.5E-07 51.5 13.7 164 158-417 13-185 (206)
10 cd08205 RuBisCO_IV_RLP Ribulos 96.7 0.0033 7.1E-08 64.5 6.8 148 233-417 137-287 (367)
11 PRK07028 bifunctional hexulose 96.7 0.089 1.9E-06 54.5 17.3 164 158-416 17-188 (430)
12 cd08210 RLP_RrRLP Ribulose bis 96.3 0.017 3.7E-07 59.6 8.9 136 242-416 137-282 (364)
13 cd00377 ICL_PEPM Members of th 96.2 0.052 1.1E-06 52.6 10.9 119 250-417 88-225 (243)
14 PRK05718 keto-hydroxyglutarate 96.1 0.51 1.1E-05 45.5 17.3 149 158-416 28-181 (212)
15 cd06556 ICL_KPHMT Members of t 95.7 0.13 2.9E-06 50.3 11.4 209 147-426 16-231 (240)
16 cd00945 Aldolase_Class_I Class 95.2 0.63 1.4E-05 41.2 13.1 51 332-382 64-125 (201)
17 cd00452 KDPG_aldolase KDPG and 95.0 1.3 2.8E-05 41.0 15.1 156 157-420 16-173 (190)
18 cd04726 KGPDC_HPS 3-Keto-L-gul 94.9 1.4 2.9E-05 40.2 14.7 163 158-417 14-185 (202)
19 PRK08645 bifunctional homocyst 94.8 1.6 3.4E-05 47.9 17.3 216 158-415 43-267 (612)
20 PLN02489 homocysteine S-methyl 94.7 1.9 4.2E-05 44.0 16.7 224 158-415 55-313 (335)
21 cd00945 Aldolase_Class_I Class 94.5 2.6 5.7E-05 37.2 15.2 152 154-376 11-178 (201)
22 cd04727 pdxS PdxS is a subunit 94.4 2.6 5.7E-05 42.9 16.5 77 160-266 18-94 (283)
23 PRK07226 fructose-bisphosphate 93.7 2.2 4.8E-05 41.7 14.3 69 329-417 159-230 (267)
24 PRK07807 inosine 5-monophospha 93.6 0.5 1.1E-05 50.6 10.4 115 158-288 227-356 (479)
25 TIGR00343 pyridoxal 5'-phospha 93.3 2.9 6.4E-05 42.6 14.8 122 160-353 20-141 (287)
26 PF02574 S-methyl_trans: Homoc 93.1 0.34 7.4E-06 47.7 7.7 227 157-415 40-285 (305)
27 cd04729 NanE N-acetylmannosami 93.0 2 4.4E-05 40.3 12.4 163 158-417 28-205 (219)
28 cd02803 OYE_like_FMN_family Ol 93.0 2.8 6.1E-05 41.3 13.8 96 158-267 142-249 (327)
29 PRK13307 bifunctional formalde 92.7 4.7 0.0001 42.5 15.7 144 189-417 205-357 (391)
30 PRK01130 N-acetylmannosamine-6 92.0 3 6.4E-05 39.2 12.1 163 158-417 24-201 (221)
31 cd02933 OYE_like_FMN Old yello 91.8 1.7 3.6E-05 44.3 10.9 169 158-372 153-334 (338)
32 PRK09485 mmuM homocysteine met 90.9 8.9 0.00019 38.4 14.8 224 158-415 46-284 (304)
33 cd06557 KPHMT-like Ketopantoat 90.8 3.4 7.3E-05 41.1 11.7 174 132-347 74-252 (254)
34 PRK04147 N-acetylneuraminate l 90.8 4.4 9.4E-05 40.0 12.4 108 234-379 16-139 (293)
35 TIGR02319 CPEP_Pphonmut carbox 90.8 3.2 6.9E-05 42.1 11.6 80 332-412 164-256 (294)
36 TIGR00259 thylakoid_BtpA membr 90.6 7.1 0.00015 39.1 13.7 170 144-374 10-204 (257)
37 PF03437 BtpA: BtpA family; I 90.6 7 0.00015 39.1 13.6 172 143-375 10-205 (254)
38 PRK00311 panB 3-methyl-2-oxobu 90.3 4.7 0.0001 40.3 12.2 166 147-347 83-255 (264)
39 cd08601 GDPD_SaGlpQ_like Glyce 90.1 2.8 6E-05 40.1 10.1 121 270-428 125-256 (256)
40 PRK14040 oxaloacetate decarbox 90.0 21 0.00046 39.6 18.0 206 133-392 5-223 (593)
41 PRK08444 hypothetical protein; 89.8 0.63 1.4E-05 47.8 5.9 218 149-414 76-320 (353)
42 PRK07188 nicotinate phosphorib 89.7 1.3 2.8E-05 45.9 8.0 70 198-292 188-285 (352)
43 cd08207 RLP_NonPhot Ribulose b 89.6 1.2 2.5E-05 47.2 7.7 136 243-417 156-300 (406)
44 cd00408 DHDPS-like Dihydrodipi 89.3 5.2 0.00011 38.7 11.4 109 234-380 10-133 (281)
45 PTZ00170 D-ribulose-5-phosphat 89.3 9.4 0.0002 36.8 13.1 94 158-285 20-115 (228)
46 TIGR03332 salvage_mtnW 2,3-dik 89.2 1.9 4.1E-05 45.7 8.9 139 242-417 151-299 (407)
47 cd08209 RLP_DK-MTP-1-P-enolase 89.1 1.2 2.6E-05 46.8 7.4 137 243-417 137-284 (391)
48 cd02932 OYE_YqiM_FMN Old yello 89.0 16 0.00035 36.8 15.0 93 158-264 155-259 (336)
49 PRK11320 prpB 2-methylisocitra 89.0 7.8 0.00017 39.3 12.7 167 147-378 21-210 (292)
50 cd02931 ER_like_FMN Enoate red 88.8 4.6 9.9E-05 41.8 11.3 110 159-268 152-274 (382)
51 PRK07534 methionine synthase I 88.8 24 0.00053 36.2 16.3 219 158-415 45-275 (336)
52 cd00739 DHPS DHPS subgroup of 88.4 3 6.5E-05 41.1 9.2 87 331-419 22-128 (257)
53 TIGR02313 HpaI-NOT-DapA 2,4-di 88.1 6.2 0.00013 39.2 11.3 110 234-381 13-138 (294)
54 COG1060 ThiH Thiamine biosynth 88.1 0.62 1.3E-05 48.5 4.4 236 148-429 85-348 (370)
55 PRK05927 hypothetical protein; 88.0 1.1 2.4E-05 46.0 6.1 114 148-285 71-199 (350)
56 cd00950 DHDPS Dihydrodipicolin 87.8 7.1 0.00015 38.0 11.3 106 235-378 14-134 (284)
57 PRK09549 mtnW 2,3-diketo-5-met 87.7 1.8 3.9E-05 45.8 7.6 145 243-417 147-294 (407)
58 TIGR03249 KdgD 5-dehydro-4-deo 87.6 7.1 0.00015 38.6 11.3 108 234-380 18-140 (296)
59 PRK03620 5-dehydro-4-deoxygluc 87.3 7.4 0.00016 38.8 11.3 116 235-389 21-154 (303)
60 cd00954 NAL N-Acetylneuraminic 87.0 8.3 0.00018 37.9 11.4 117 235-389 14-153 (288)
61 cd08148 RuBisCO_large Ribulose 86.5 3.9 8.5E-05 42.7 9.2 136 243-417 140-286 (366)
62 TIGR00674 dapA dihydrodipicoli 86.0 9.1 0.0002 37.6 11.0 107 234-378 11-132 (285)
63 PRK11613 folP dihydropteroate 85.9 2.8 6.1E-05 42.2 7.6 98 309-419 21-141 (282)
64 TIGR03551 F420_cofH 7,8-dideme 85.8 1.9 4.2E-05 43.4 6.4 56 150-216 67-122 (343)
65 cd04733 OYE_like_2_FMN Old yel 85.6 17 0.00037 36.7 13.0 95 158-266 150-256 (338)
66 TIGR03326 rubisco_III ribulose 85.6 2.5 5.5E-05 44.8 7.4 136 243-417 157-304 (412)
67 COG5016 Pyruvate/oxaloacetate 85.6 3.5 7.5E-05 44.3 8.3 206 148-402 90-325 (472)
68 PRK12999 pyruvate carboxylase; 85.5 2 4.4E-05 50.6 7.2 217 159-415 629-872 (1146)
69 PRK00043 thiE thiamine-phospha 85.3 3.8 8.1E-05 37.5 7.6 62 331-416 113-186 (212)
70 TIGR01303 IMP_DH_rel_1 IMP deh 85.2 6.1 0.00013 42.4 10.1 117 158-293 225-359 (475)
71 PF13714 PEP_mutase: Phosphoen 84.9 5.2 0.00011 39.2 8.7 176 166-420 25-221 (238)
72 cd08208 RLP_Photo Ribulose bis 84.9 2.9 6.2E-05 44.6 7.4 136 243-417 173-317 (424)
73 cd00958 DhnA Class I fructose- 84.7 36 0.00078 32.1 14.9 184 158-417 22-213 (235)
74 TIGR00222 panB 3-methyl-2-oxob 84.6 24 0.00052 35.6 13.3 172 146-376 18-201 (263)
75 PRK09613 thiH thiamine biosynt 84.2 5.5 0.00012 42.9 9.2 105 151-290 113-238 (469)
76 PRK09282 pyruvate carboxylase 84.1 17 0.00037 40.2 13.1 219 157-420 96-341 (592)
77 PRK14042 pyruvate carboxylase 84.0 5.2 0.00011 44.4 9.1 257 105-415 54-335 (596)
78 cd00377 ICL_PEPM Members of th 83.4 6.5 0.00014 38.3 8.7 116 158-294 85-203 (243)
79 cd06557 KPHMT-like Ketopantoat 83.1 19 0.0004 35.9 11.8 176 146-376 15-199 (254)
80 PRK12330 oxaloacetate decarbox 83.1 6 0.00013 43.0 9.0 230 147-419 88-343 (499)
81 PRK15063 isocitrate lyase; Pro 83.0 17 0.00037 39.1 12.1 106 271-383 206-318 (428)
82 PF13714 PEP_mutase: Phosphoen 82.9 6.4 0.00014 38.6 8.4 125 114-280 60-190 (238)
83 cd08213 RuBisCO_large_III Ribu 82.2 4.1 8.9E-05 43.2 7.2 144 243-417 144-291 (412)
84 PRK12331 oxaloacetate decarbox 82.1 8.2 0.00018 41.3 9.4 227 147-420 87-344 (448)
85 TIGR02351 thiH thiazole biosyn 82.0 7.1 0.00015 40.0 8.7 58 147-215 98-155 (366)
86 TIGR02317 prpB methylisocitrat 82.0 15 0.00032 37.3 10.7 155 165-378 28-205 (285)
87 TIGR00423 radical SAM domain p 81.9 2.5 5.4E-05 42.0 5.3 57 149-216 32-88 (309)
88 cd02930 DCR_FMN 2,4-dienoyl-Co 81.6 58 0.0013 33.2 15.0 187 196-395 29-301 (353)
89 PRK05458 guanosine 5'-monophos 80.6 5.5 0.00012 41.0 7.3 50 158-220 97-149 (326)
90 PRK03170 dihydrodipicolinate s 80.6 25 0.00055 34.5 11.7 49 330-378 80-135 (292)
91 cd08206 RuBisCO_large_I_II_III 80.6 5.8 0.00012 42.2 7.6 136 243-417 145-293 (414)
92 PRK14040 oxaloacetate decarbox 80.3 24 0.00051 39.2 12.4 227 149-418 90-340 (593)
93 TIGR01496 DHPS dihydropteroate 80.2 18 0.0004 35.6 10.5 85 333-419 23-126 (257)
94 TIGR03700 mena_SCO4494 putativ 80.0 4.3 9.3E-05 41.3 6.3 58 148-216 74-131 (351)
95 PRK12344 putative alpha-isopro 79.9 26 0.00057 38.1 12.5 200 145-415 17-230 (524)
96 TIGR01108 oadA oxaloacetate de 79.6 8 0.00017 42.6 8.6 217 158-419 92-335 (582)
97 TIGR02320 PEP_mutase phosphoen 79.2 54 0.0012 33.2 13.7 124 241-417 90-239 (285)
98 PRK09282 pyruvate carboxylase 78.8 1.1E+02 0.0025 33.9 17.2 203 133-392 4-222 (592)
99 CHL00040 rbcL ribulose-1,5-bis 78.2 10 0.00022 41.1 8.8 135 243-416 180-327 (475)
100 PRK09490 metH B12-dependent me 78.2 30 0.00066 41.6 13.2 172 241-419 287-488 (1229)
101 PRK08508 biotin synthase; Prov 78.2 23 0.00049 35.0 10.6 59 149-216 35-94 (279)
102 PF00016 RuBisCO_large: Ribulo 78.2 7.7 0.00017 39.8 7.5 136 243-417 27-175 (309)
103 cd08556 GDPD Glycerophosphodie 78.1 18 0.0004 31.9 9.0 112 271-418 76-188 (189)
104 PRK00311 panB 3-methyl-2-oxobu 77.9 11 0.00024 37.8 8.3 151 253-428 29-192 (264)
105 PRK05567 inosine 5'-monophosph 77.8 11 0.00024 40.2 8.8 67 159-264 229-295 (486)
106 TIGR01302 IMP_dehydrog inosine 77.7 18 0.0004 38.2 10.3 48 157-217 223-270 (450)
107 TIGR03551 F420_cofH 7,8-dideme 77.5 12 0.00026 37.8 8.6 85 317-416 64-156 (343)
108 PRK04180 pyridoxal biosynthesi 77.5 3.5 7.6E-05 42.2 4.7 143 160-374 27-207 (293)
109 PRK07565 dihydroorotate dehydr 77.3 14 0.00031 37.3 9.0 57 345-417 126-196 (334)
110 PRK04208 rbcL ribulose bisopho 77.1 8.7 0.00019 41.5 7.8 136 243-417 173-321 (468)
111 TIGR03699 mena_SCO4550 menaqui 77.1 11 0.00024 37.8 8.1 84 318-416 67-158 (340)
112 PRK07360 FO synthase subunit 2 76.8 5 0.00011 41.2 5.7 58 149-216 87-144 (371)
113 TIGR00222 panB 3-methyl-2-oxob 76.8 4.7 0.0001 40.5 5.4 156 158-347 93-254 (263)
114 PF01487 DHquinase_I: Type I 3 76.7 7.4 0.00016 36.7 6.5 91 329-419 6-121 (224)
115 TIGR02082 metH 5-methyltetrahy 76.3 1.1E+02 0.0025 36.8 17.1 222 157-415 49-294 (1178)
116 TIGR03572 WbuZ glycosyl amidat 75.8 73 0.0016 30.1 16.9 187 158-417 31-226 (232)
117 PRK09234 fbiC FO synthase; Rev 75.7 5.9 0.00013 45.5 6.4 59 148-217 552-610 (843)
118 TIGR00284 dihydropteroate synt 75.7 33 0.00071 37.5 11.7 182 219-419 138-352 (499)
119 cd00423 Pterin_binding Pterin 75.6 31 0.00068 33.6 10.6 87 331-419 22-128 (258)
120 PRK12656 fructose-6-phosphate 75.0 1.5 3.3E-05 42.7 1.4 95 193-294 64-168 (222)
121 PRK08445 hypothetical protein; 73.9 9.6 0.00021 39.1 6.9 60 147-217 67-126 (348)
122 PRK12581 oxaloacetate decarbox 73.7 11 0.00024 40.8 7.5 258 106-419 64-352 (468)
123 cd04732 HisA HisA. Phosphorib 73.7 24 0.00053 32.9 9.0 53 316-375 19-78 (234)
124 PLN02877 alpha-amylase/limit d 73.5 58 0.0013 38.5 13.6 155 127-283 339-579 (970)
125 PF00072 Response_reg: Respons 73.5 15 0.00033 29.0 6.6 64 328-394 28-95 (112)
126 PF01136 Peptidase_U32: Peptid 73.4 32 0.00068 32.3 9.7 89 158-293 3-92 (233)
127 PRK00865 glutamate racemase; P 73.0 46 0.001 32.6 11.1 90 202-303 20-128 (261)
128 TIGR01305 GMP_reduct_1 guanosi 72.6 33 0.00072 36.0 10.4 46 159-217 108-155 (343)
129 cd06556 ICL_KPHMT Members of t 72.4 66 0.0014 31.7 12.0 134 147-312 80-217 (240)
130 PF01177 Asp_Glu_race: Asp/Glu 72.4 9.6 0.00021 34.7 5.9 161 203-374 13-205 (216)
131 TIGR01163 rpe ribulose-phospha 71.6 81 0.0018 28.7 17.7 51 148-209 3-54 (210)
132 PRK05096 guanosine 5'-monophos 71.3 14 0.0003 38.8 7.3 67 158-263 108-176 (346)
133 PTZ00314 inosine-5'-monophosph 71.2 41 0.0009 36.4 11.1 68 158-264 241-308 (495)
134 PRK12928 lipoyl synthase; Prov 71.0 29 0.00063 34.9 9.4 130 151-295 85-243 (290)
135 cd03174 DRE_TIM_metallolyase D 70.3 98 0.0021 29.2 18.2 178 147-392 11-215 (265)
136 TIGR00078 nadC nicotinate-nucl 70.1 14 0.00031 36.8 6.9 63 329-417 185-249 (265)
137 TIGR02320 PEP_mutase phosphoen 69.9 26 0.00056 35.4 8.8 115 158-291 93-215 (285)
138 PLN02424 ketopantoate hydroxym 69.8 55 0.0012 34.3 11.2 148 200-386 84-237 (332)
139 PRK14041 oxaloacetate decarbox 69.7 19 0.00041 38.9 8.2 216 159-420 97-340 (467)
140 cd04724 Tryptophan_synthase_al 69.6 79 0.0017 30.7 11.7 112 158-295 15-140 (242)
141 TIGR00737 nifR3_yhdG putative 69.5 21 0.00046 35.6 8.1 80 320-416 66-165 (319)
142 COG2513 PrpB PEP phosphonomuta 69.1 25 0.00055 36.1 8.5 102 158-283 94-201 (289)
143 PRK02227 hypothetical protein; 69.0 20 0.00044 35.7 7.7 43 329-375 7-57 (238)
144 PLN02424 ketopantoate hydroxym 68.7 17 0.00037 37.9 7.3 145 251-428 47-213 (332)
145 PRK08072 nicotinate-nucleotide 68.4 16 0.00035 36.7 6.9 66 329-418 195-260 (277)
146 COG0269 SgbH 3-hexulose-6-phos 67.9 4.2 9.1E-05 40.0 2.7 139 195-417 41-191 (217)
147 cd04730 NPD_like 2-Nitropropan 67.9 97 0.0021 28.9 11.6 55 344-417 120-184 (236)
148 PRK02412 aroD 3-dehydroquinate 67.1 36 0.00078 33.3 8.9 93 327-419 22-143 (253)
149 cd01573 modD_like ModD; Quinol 66.7 16 0.00036 36.4 6.6 73 329-427 190-266 (272)
150 cd00951 KDGDH 5-dehydro-4-deox 66.6 15 0.00032 36.4 6.2 118 234-390 13-148 (289)
151 cd02801 DUS_like_FMN Dihydrour 66.5 32 0.00069 32.0 8.1 74 329-415 62-155 (231)
152 PRK13585 1-(5-phosphoribosyl)- 66.4 1.2E+02 0.0026 28.7 20.4 180 158-417 33-221 (241)
153 PLN02274 inosine-5'-monophosph 66.2 20 0.00043 38.9 7.5 49 158-219 248-297 (505)
154 PRK11815 tRNA-dihydrouridine s 66.1 47 0.001 33.9 9.8 91 158-266 78-171 (333)
155 PRK08645 bifunctional homocyst 65.9 2.2E+02 0.0048 31.6 16.1 149 244-416 248-414 (612)
156 TIGR01235 pyruv_carbox pyruvat 65.8 22 0.00047 42.4 8.3 223 156-415 624-870 (1143)
157 KOG2335 tRNA-dihydrouridine sy 65.5 7.6 0.00016 40.8 4.1 78 157-243 155-241 (358)
158 PF06506 PrpR_N: Propionate ca 65.3 35 0.00076 31.2 8.0 97 323-425 10-140 (176)
159 PRK06552 keto-hydroxyglutarate 65.2 18 0.00039 34.9 6.3 53 141-216 107-159 (213)
160 TIGR01949 AroFGH_arch predicte 65.0 30 0.00066 33.6 7.9 59 343-417 166-226 (258)
161 PRK06512 thiamine-phosphate py 65.0 25 0.00054 34.0 7.3 53 344-416 129-190 (221)
162 cd08211 RuBisCO_large_II Ribul 64.6 22 0.00048 38.3 7.4 136 243-417 170-321 (439)
163 PRK13306 ulaD 3-keto-L-gulonat 64.5 27 0.00058 33.6 7.3 55 188-267 34-88 (216)
164 PF12010 DUF3502: Domain of un 64.4 8.8 0.00019 34.2 3.8 44 388-431 91-134 (134)
165 PRK09234 fbiC FO synthase; Rev 64.3 28 0.00062 40.2 8.7 86 317-417 551-644 (843)
166 cd00564 TMP_TenI Thiamine mono 64.1 35 0.00076 30.2 7.6 55 343-417 112-177 (196)
167 TIGR02319 CPEP_Pphonmut carbox 64.1 87 0.0019 32.0 11.2 127 114-280 68-200 (294)
168 cd08212 RuBisCO_large_I Ribulo 63.8 21 0.00047 38.4 7.2 135 243-417 158-305 (450)
169 cd02072 Glm_B12_BD B12 binding 63.5 11 0.00023 34.2 4.2 49 241-292 35-86 (128)
170 cd01571 NAPRTase_B Nicotinate 62.9 19 0.00041 36.4 6.3 66 199-291 170-249 (302)
171 COG1038 PycA Pyruvate carboxyl 62.8 26 0.00055 41.0 7.8 100 157-281 630-737 (1149)
172 PRK01261 aroD 3-dehydroquinate 62.8 20 0.00043 35.1 6.2 95 327-423 27-131 (229)
173 PF00682 HMGL-like: HMGL-like 62.7 5.5 0.00012 37.5 2.3 85 148-266 129-213 (237)
174 PF02548 Pantoate_transf: Keto 62.3 22 0.00047 35.9 6.5 146 251-429 28-194 (261)
175 PRK05926 hypothetical protein; 62.3 14 0.00029 38.5 5.3 120 147-286 93-222 (370)
176 PRK11320 prpB 2-methylisocitra 62.2 1.3E+02 0.0028 30.8 12.0 98 158-282 94-200 (292)
177 cd07940 DRE_TIM_IPMS 2-isoprop 62.0 22 0.00047 34.7 6.3 89 148-268 135-223 (268)
178 COG2197 CitB Response regulato 61.5 71 0.0015 30.2 9.5 98 323-428 26-133 (211)
179 PF02219 MTHFR: Methylenetetra 61.4 38 0.00083 33.5 8.0 116 158-290 86-203 (287)
180 COG3543 Uncharacterized conser 60.8 6.2 0.00013 36.4 2.2 39 202-244 32-74 (135)
181 PRK09240 thiH thiamine biosynt 60.8 18 0.00038 37.4 5.7 54 151-214 102-155 (371)
182 PRK07475 hypothetical protein; 60.5 1.2E+02 0.0026 29.7 11.1 128 243-376 62-225 (245)
183 TIGR03151 enACPred_II putative 60.4 38 0.00083 34.2 7.9 43 329-375 116-166 (307)
184 cd04732 HisA HisA. Phosphorib 60.3 1.5E+02 0.0032 27.7 19.5 162 152-375 26-195 (234)
185 TIGR01108 oadA oxaloacetate de 60.3 2.8E+02 0.0061 30.9 19.7 193 146-392 11-217 (582)
186 smart00642 Aamy Alpha-amylase 60.3 51 0.0011 30.4 8.1 68 155-226 18-97 (166)
187 cd00502 DHQase_I Type I 3-dehy 60.3 29 0.00063 32.9 6.7 88 331-420 11-122 (225)
188 PRK13125 trpA tryptophan synth 60.2 31 0.00066 33.4 7.0 60 359-418 63-136 (244)
189 PRK09140 2-dehydro-3-deoxy-6-p 60.1 75 0.0016 30.4 9.5 62 157-234 22-89 (206)
190 TIGR00676 fadh2 5,10-methylene 59.8 1.8E+02 0.004 28.7 13.3 110 158-285 74-184 (272)
191 PRK08508 biotin synthase; Prov 59.2 39 0.00085 33.4 7.7 100 286-416 5-117 (279)
192 TIGR00126 deoC deoxyribose-pho 59.2 1.2E+02 0.0026 29.4 10.8 130 240-420 15-156 (211)
193 COG0685 MetF 5,10-methylenetet 58.7 94 0.002 31.4 10.3 130 141-292 78-208 (291)
194 cd01568 QPRTase_NadC Quinolina 58.7 40 0.00087 33.5 7.6 63 329-417 188-254 (269)
195 cd07945 DRE_TIM_CMS Leptospira 58.7 15 0.00033 36.6 4.7 82 152-267 143-224 (280)
196 TIGR00640 acid_CoA_mut_C methy 58.4 14 0.00031 33.0 4.0 49 241-292 38-89 (132)
197 cd00429 RPE Ribulose-5-phospha 58.4 1.4E+02 0.0031 27.0 17.2 52 148-210 4-56 (211)
198 cd01945 ribokinase_group_B Rib 58.3 69 0.0015 30.3 8.8 109 250-372 41-153 (284)
199 PRK11815 tRNA-dihydrouridine s 58.2 48 0.001 33.8 8.3 81 319-416 67-169 (333)
200 PF00478 IMPDH: IMP dehydrogen 58.1 26 0.00056 36.7 6.4 104 158-302 108-211 (352)
201 cd08555 PI-PLCc_GDPD_SF Cataly 58.1 1.1E+02 0.0023 28.0 9.7 41 359-419 139-179 (179)
202 cd07938 DRE_TIM_HMGL 3-hydroxy 58.1 19 0.00041 35.8 5.2 96 160-270 76-173 (274)
203 PF00478 IMPDH: IMP dehydrogen 57.9 25 0.00054 36.9 6.2 54 343-416 117-175 (352)
204 PRK05742 nicotinate-nucleotide 57.9 34 0.00073 34.6 7.0 65 329-419 196-262 (277)
205 PF04131 NanE: Putative N-acet 57.8 58 0.0013 31.7 8.3 48 159-220 53-100 (192)
206 cd00381 IMPDH IMPDH: The catal 57.8 48 0.001 33.8 8.1 68 158-264 94-161 (325)
207 PRK09490 metH B12-dependent me 57.6 1.8E+02 0.0039 35.5 13.8 221 157-415 64-310 (1229)
208 PRK05692 hydroxymethylglutaryl 57.6 20 0.00044 35.9 5.4 91 160-270 82-179 (287)
209 cd04724 Tryptophan_synthase_al 57.2 68 0.0015 31.1 8.8 86 331-416 12-134 (242)
210 cd04734 OYE_like_3_FMN Old yel 57.0 62 0.0014 33.1 8.9 95 159-267 143-250 (343)
211 COG0646 MetH Methionine syntha 57.0 16 0.00035 37.8 4.6 162 233-415 40-224 (311)
212 PRK07695 transcriptional regul 56.3 52 0.0011 30.5 7.5 56 344-419 113-180 (201)
213 cd00331 IGPS Indole-3-glycerol 56.2 1.6E+02 0.0035 27.5 10.9 141 247-417 32-200 (217)
214 cd03174 DRE_TIM_metallolyase D 56.1 19 0.00042 33.9 4.8 89 149-271 137-227 (265)
215 cd04725 OMP_decarboxylase_like 56.0 32 0.00069 32.7 6.2 70 329-416 7-81 (216)
216 TIGR00262 trpA tryptophan synt 55.7 1.6E+02 0.0035 29.1 11.2 71 343-415 34-144 (256)
217 TIGR00875 fsa_talC_mipB fructo 55.5 15 0.00033 35.5 4.0 51 243-294 106-164 (213)
218 PRK07428 nicotinate-nucleotide 55.3 37 0.0008 34.5 6.8 91 300-420 177-273 (288)
219 KOG2550 IMP dehydrogenase/GMP 55.3 40 0.00086 36.7 7.3 74 159-273 252-326 (503)
220 cd04740 DHOD_1B_like Dihydroor 55.0 1.2E+02 0.0025 29.8 10.1 88 158-271 103-191 (296)
221 TIGR00423 radical SAM domain p 54.9 65 0.0014 32.1 8.5 83 319-416 32-122 (309)
222 cd04739 DHOD_like Dihydroorota 54.8 42 0.0009 34.1 7.1 44 358-417 151-194 (325)
223 PRK01362 putative translaldola 54.7 17 0.00038 35.2 4.3 52 243-295 106-165 (214)
224 TIGR03699 mena_SCO4550 menaqui 54.6 19 0.00042 36.0 4.8 57 149-216 68-124 (340)
225 TIGR03550 F420_cofG 7,8-dideme 54.4 41 0.00088 33.9 7.0 116 148-285 30-163 (322)
226 PLN02334 ribulose-phosphate 3- 54.2 1.6E+02 0.0036 28.0 10.7 140 245-416 19-200 (229)
227 cd00952 CHBPH_aldolase Trans-o 53.9 30 0.00065 34.8 5.9 107 236-380 23-145 (309)
228 TIGR00510 lipA lipoate synthas 53.7 92 0.002 31.8 9.4 172 111-294 30-245 (302)
229 PRK12331 oxaloacetate decarbox 53.4 3.2E+02 0.007 29.5 18.5 224 133-413 4-255 (448)
230 cd00381 IMPDH IMPDH: The catal 53.2 71 0.0015 32.6 8.5 45 334-378 94-143 (325)
231 PRK05096 guanosine 5'-monophos 52.9 33 0.00073 36.0 6.2 57 340-416 116-177 (346)
232 cd02930 DCR_FMN 2,4-dienoyl-Co 52.6 91 0.002 31.8 9.2 169 158-368 138-322 (353)
233 PRK08444 hypothetical protein; 52.6 33 0.00071 35.5 6.1 107 289-417 51-167 (353)
234 PRK07094 biotin synthase; Prov 52.5 63 0.0014 32.0 7.9 53 150-214 67-119 (323)
235 cd04735 OYE_like_4_FMN Old yel 52.4 58 0.0013 33.3 7.8 96 159-268 146-257 (353)
236 PRK09310 aroDE bifunctional 3- 52.4 51 0.0011 35.3 7.6 91 327-420 6-112 (477)
237 PRK02615 thiamine-phosphate py 51.9 50 0.0011 34.4 7.3 53 344-416 258-320 (347)
238 cd01572 QPRTase Quinolinate ph 51.7 53 0.0011 32.8 7.2 63 329-417 189-253 (268)
239 PLN02540 methylenetetrahydrofo 51.7 2.7E+02 0.0059 31.2 13.1 182 146-368 58-260 (565)
240 cd02801 DUS_like_FMN Dihydrour 51.6 61 0.0013 30.1 7.2 106 111-220 11-131 (231)
241 PRK06015 keto-hydroxyglutarate 51.4 27 0.00059 33.7 5.0 54 141-216 95-148 (201)
242 PRK10840 transcriptional regul 51.3 1.6E+02 0.0035 26.7 9.8 78 329-409 35-125 (216)
243 PRK10415 tRNA-dihydrouridine s 51.2 74 0.0016 32.3 8.3 76 329-416 72-167 (321)
244 TIGR00693 thiE thiamine-phosph 51.0 69 0.0015 29.2 7.4 64 330-417 104-179 (196)
245 CHL00148 orf27 Ycf27; Reviewed 51.0 1.7E+02 0.0038 26.0 9.8 64 329-395 36-102 (240)
246 cd04731 HisF The cyclase subun 50.5 2.3E+02 0.005 26.9 16.6 160 158-375 28-198 (243)
247 PRK05926 hypothetical protein; 50.2 64 0.0014 33.7 7.8 86 316-418 92-186 (370)
248 PRK13111 trpA tryptophan synth 50.2 85 0.0018 31.2 8.3 109 158-295 27-153 (258)
249 cd00956 Transaldolase_FSA Tran 49.9 27 0.00057 33.6 4.7 39 249-291 112-161 (211)
250 TIGR02151 IPP_isom_2 isopenten 49.7 1.3E+02 0.0028 30.7 9.8 96 297-417 100-209 (333)
251 PRK12653 fructose-6-phosphate 49.6 23 0.0005 34.6 4.2 48 244-292 109-164 (220)
252 cd04726 KGPDC_HPS 3-Keto-L-gul 49.5 1.7E+02 0.0037 26.6 9.6 91 329-422 9-117 (202)
253 PRK14041 oxaloacetate decarbox 49.3 3.8E+02 0.0083 29.2 19.1 204 133-392 3-221 (467)
254 cd03322 rpsA The starvation se 49.1 2.5E+02 0.0053 28.7 11.7 114 158-293 129-271 (361)
255 PRK13306 ulaD 3-keto-L-gulonat 48.6 39 0.00084 32.5 5.6 70 329-418 12-87 (216)
256 PRK05458 guanosine 5'-monophos 48.5 65 0.0014 33.4 7.4 47 333-379 96-149 (326)
257 TIGR00736 nifR3_rel_arch TIM-b 48.5 46 0.001 32.7 6.2 55 343-416 158-218 (231)
258 TIGR01740 pyrF orotidine 5'-ph 48.4 51 0.0011 31.2 6.3 72 329-418 7-83 (213)
259 TIGR01501 MthylAspMutase methy 48.4 25 0.00055 32.0 4.0 48 241-291 37-87 (134)
260 PLN02520 bifunctional 3-dehydr 48.2 1E+02 0.0022 33.6 9.2 96 325-420 27-144 (529)
261 PRK07535 methyltetrahydrofolat 48.2 87 0.0019 31.1 8.1 88 330-419 22-124 (261)
262 PRK12383 putative mutase; Prov 47.9 32 0.00069 36.7 5.3 75 154-233 229-306 (406)
263 TIGR01334 modD putative molybd 47.9 58 0.0013 33.0 6.9 88 304-418 174-263 (277)
264 TIGR02321 Pphn_pyruv_hyd phosp 47.8 64 0.0014 32.8 7.2 41 333-374 166-209 (290)
265 PRK13523 NADPH dehydrogenase N 47.7 2.5E+02 0.0055 28.9 11.5 129 242-395 138-300 (337)
266 TIGR01182 eda Entner-Doudoroff 47.3 1.5E+02 0.0033 28.7 9.4 79 331-429 18-99 (204)
267 PRK07259 dihydroorotate dehydr 47.1 64 0.0014 31.8 7.0 41 358-417 222-262 (301)
268 cd04740 DHOD_1B_like Dihydroor 46.9 68 0.0015 31.4 7.1 42 358-418 219-260 (296)
269 cd00958 DhnA Class I fructose- 46.7 1.2E+02 0.0027 28.6 8.5 69 343-421 86-166 (235)
270 PRK14017 galactonate dehydrata 46.6 2.8E+02 0.006 28.6 11.6 128 158-294 127-286 (382)
271 COG0329 DapA Dihydrodipicolina 46.6 51 0.0011 33.2 6.3 107 236-380 19-140 (299)
272 PLN02746 hydroxymethylglutaryl 46.5 33 0.00073 35.7 5.1 102 160-281 124-240 (347)
273 COG0800 Eda 2-keto-3-deoxy-6-p 46.4 1.2E+02 0.0026 30.0 8.5 72 150-263 18-89 (211)
274 TIGR01303 IMP_DH_rel_1 IMP deh 46.1 58 0.0012 35.2 6.9 218 145-416 64-292 (475)
275 cd07944 DRE_TIM_HOA_like 4-hyd 46.0 1.3E+02 0.0028 29.8 8.8 82 146-232 11-99 (266)
276 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.9 1.4E+02 0.003 29.5 9.1 93 147-271 82-174 (275)
277 PF00128 Alpha-amylase: Alpha 45.8 30 0.00064 32.2 4.2 60 158-223 5-76 (316)
278 PRK00748 1-(5-phosphoribosyl)- 45.3 2.6E+02 0.0057 26.1 15.7 32 344-375 157-195 (233)
279 TIGR01285 nifN nitrogenase mol 45.2 2E+02 0.0044 30.4 10.7 252 157-427 77-390 (432)
280 PRK10046 dpiA two-component re 45.2 96 0.0021 28.7 7.4 64 329-395 36-103 (225)
281 TIGR03700 mena_SCO4494 putativ 45.2 1E+02 0.0022 31.5 8.2 83 319-416 75-165 (351)
282 cd07939 DRE_TIM_NifV Streptomy 45.1 34 0.00074 33.2 4.7 91 146-271 129-219 (259)
283 TIGR01037 pyrD_sub1_fam dihydr 45.0 80 0.0017 31.1 7.3 40 359-417 223-262 (300)
284 PRK07360 FO synthase subunit 2 44.6 1.3E+02 0.0028 31.1 9.0 95 300-416 74-178 (371)
285 PF00701 DHDPS: Dihydrodipicol 44.4 46 0.00099 32.6 5.4 107 234-378 14-135 (289)
286 cd07943 DRE_TIM_HOA 4-hydroxy- 44.3 60 0.0013 31.6 6.2 76 151-263 136-214 (263)
287 TIGR00683 nanA N-acetylneurami 44.3 58 0.0013 32.4 6.2 109 234-380 13-138 (290)
288 PF02574 S-methyl_trans: Homoc 44.2 17 0.00037 35.9 2.5 23 396-418 39-61 (305)
289 PRK10766 DNA-binding transcrip 44.2 1.2E+02 0.0026 26.9 7.6 64 329-395 32-98 (221)
290 cd06533 Glyco_transf_WecG_TagA 44.0 78 0.0017 29.1 6.6 44 159-217 34-77 (171)
291 PF02581 TMP-TENI: Thiamine mo 44.0 80 0.0017 28.9 6.7 63 330-416 103-175 (180)
292 PTZ00314 inosine-5'-monophosph 44.0 50 0.0011 35.8 6.1 119 274-416 181-308 (495)
293 TIGR00674 dapA dihydrodipicoli 44.0 1.6E+02 0.0035 28.9 9.2 108 153-293 16-130 (285)
294 PF04898 Glu_syn_central: Glut 43.9 44 0.00095 34.2 5.3 55 241-295 137-202 (287)
295 PRK05718 keto-hydroxyglutarate 43.6 1.3E+02 0.0027 29.3 8.2 76 331-428 25-105 (212)
296 cd02810 DHOD_DHPD_FMN Dihydroo 43.4 1.1E+02 0.0023 29.9 7.7 59 345-417 123-195 (289)
297 cd00429 RPE Ribulose-5-phospha 43.2 1.3E+02 0.0029 27.2 7.9 87 329-418 11-112 (211)
298 PLN00191 enolase 43.2 1.1E+02 0.0025 33.0 8.6 130 272-418 245-395 (457)
299 PRK00278 trpC indole-3-glycero 43.2 88 0.0019 30.9 7.2 83 338-421 74-170 (260)
300 PRK07455 keto-hydroxyglutarate 43.1 98 0.0021 29.0 7.2 150 157-415 24-177 (187)
301 COG2040 MHT1 Homocysteine/sele 43.0 20 0.00043 37.0 2.8 25 393-417 38-62 (300)
302 PRK07114 keto-hydroxyglutarate 43.0 41 0.00088 33.0 4.8 53 141-216 110-162 (222)
303 cd07941 DRE_TIM_LeuA3 Desulfob 42.9 47 0.001 32.7 5.3 82 151-266 146-227 (273)
304 TIGR02317 prpB methylisocitrat 42.8 2.6E+02 0.0057 28.4 10.6 101 158-280 89-196 (285)
305 PRK09140 2-dehydro-3-deoxy-6-p 42.5 1.2E+02 0.0026 29.0 7.8 144 243-416 19-177 (206)
306 cd07938 DRE_TIM_HMGL 3-hydroxy 42.5 64 0.0014 32.0 6.2 82 152-267 145-226 (274)
307 PF00809 Pterin_bind: Pterin b 42.3 82 0.0018 29.9 6.6 86 333-420 19-125 (210)
308 PLN02808 alpha-galactosidase 42.2 2.3E+02 0.005 30.2 10.5 100 166-285 63-178 (386)
309 PRK10955 DNA-binding transcrip 42.1 1.4E+02 0.003 26.5 7.8 63 329-395 31-96 (232)
310 TIGR01093 aroD 3-dehydroquinat 42.1 2.4E+02 0.0053 26.9 9.8 91 328-419 7-126 (228)
311 PRK00912 ribonuclease P protei 41.8 3.2E+02 0.0069 26.1 10.6 90 329-421 65-177 (237)
312 TIGR03128 RuMP_HxlA 3-hexulose 41.8 1.9E+02 0.004 26.7 8.7 43 329-374 8-56 (206)
313 PRK15381 pathogenicity island 41.7 47 0.001 35.3 5.4 57 158-215 262-328 (408)
314 PRK13305 sgbH 3-keto-L-gulonat 41.7 51 0.0011 32.1 5.2 32 188-221 34-65 (218)
315 TIGR02709 branched_ptb branche 41.6 1.9E+02 0.0041 29.4 9.4 182 156-369 10-233 (271)
316 cd00537 MTHFR Methylenetetrahy 41.5 3.5E+02 0.0075 26.4 12.5 114 158-290 74-191 (274)
317 PLN02743 nicotinamidase 41.4 90 0.002 30.7 6.9 83 165-264 145-235 (239)
318 cd00331 IGPS Indole-3-glycerol 41.4 2.9E+02 0.0062 25.8 10.0 33 343-375 41-77 (217)
319 KOG3111 D-ribulose-5-phosphate 41.3 28 0.0006 34.5 3.3 146 243-417 14-196 (224)
320 cd02811 IDI-2_FMN Isopentenyl- 41.3 1.6E+02 0.0035 30.0 8.9 92 301-416 102-207 (326)
321 PF01680 SOR_SNZ: SOR/SNZ fami 41.1 53 0.0012 32.2 5.2 92 249-355 24-147 (208)
322 PRK10200 putative racemase; Pr 41.0 83 0.0018 30.4 6.6 64 242-305 58-137 (230)
323 PRK09485 mmuM homocysteine met 41.0 23 0.00049 35.6 2.8 24 394-417 42-65 (304)
324 cd04722 TIM_phosphate_binding 40.8 70 0.0015 27.6 5.5 37 343-379 81-123 (200)
325 COG0399 WecE Predicted pyridox 40.7 1.6E+02 0.0034 31.2 9.0 184 131-354 97-318 (374)
326 TIGR01182 eda Entner-Doudoroff 40.7 41 0.00089 32.6 4.4 71 141-233 99-174 (204)
327 PRK07565 dihydroorotate dehydr 40.7 2.2E+02 0.0047 28.9 9.7 117 131-288 166-298 (334)
328 PF05582 Peptidase_U57: YabG p 40.6 23 0.00051 36.3 2.8 72 141-237 98-171 (287)
329 TIGR00067 glut_race glutamate 40.5 3.7E+02 0.008 26.4 14.3 50 202-263 13-65 (251)
330 PF09505 Dimeth_Pyl: Dimethyla 39.9 17 0.00036 38.5 1.7 74 185-266 210-286 (466)
331 PRK07107 inosine 5-monophospha 39.8 73 0.0016 34.7 6.6 62 334-415 242-309 (502)
332 PRK05481 lipoyl synthase; Prov 39.8 62 0.0013 32.4 5.6 55 152-214 79-133 (289)
333 COG1856 Uncharacterized homolo 39.6 1.1E+02 0.0025 31.1 7.3 83 158-281 43-130 (275)
334 cd08562 GDPD_EcUgpQ_like Glyce 39.5 3.1E+02 0.0068 25.3 10.2 118 264-419 109-228 (229)
335 TIGR02855 spore_yabG sporulati 39.5 25 0.00055 36.0 2.9 68 146-238 102-171 (283)
336 cd01846 fatty_acyltransferase_ 39.1 1E+02 0.0022 29.2 6.7 61 158-219 132-205 (270)
337 PLN02428 lipoic acid synthase 39.1 75 0.0016 33.3 6.3 194 143-393 120-315 (349)
338 TIGR00677 fadh2_euk methylenet 38.9 4.2E+02 0.0091 26.6 13.9 170 158-368 75-252 (281)
339 cd01537 PBP1_Repressors_Sugar_ 38.8 1.2E+02 0.0025 27.1 6.7 137 162-303 71-223 (264)
340 TIGR00587 nfo apurinic endonuc 38.8 1.5E+02 0.0032 29.0 8.0 96 152-263 6-105 (274)
341 cd07944 DRE_TIM_HOA_like 4-hyd 38.7 59 0.0013 32.1 5.3 21 252-272 201-221 (266)
342 COG0413 PanB Ketopantoate hydr 38.6 1.7E+02 0.0037 30.0 8.5 94 320-427 87-191 (268)
343 PRK10423 transcriptional repre 38.4 1.6E+02 0.0035 28.1 8.0 103 268-376 25-142 (327)
344 TIGR00262 trpA tryptophan synt 38.4 1.8E+02 0.0038 28.8 8.5 109 158-295 25-151 (256)
345 PRK14987 gluconate operon tran 38.4 2.2E+02 0.0047 27.5 9.0 124 243-376 6-148 (331)
346 PRK13352 thiamine biosynthesis 38.4 2.2E+02 0.0048 31.0 9.7 100 329-432 73-179 (431)
347 PRK11517 transcriptional regul 38.3 1.6E+02 0.0034 25.9 7.5 64 329-395 30-96 (223)
348 PF04309 G3P_antiterm: Glycero 38.2 28 0.00061 33.1 2.8 66 333-418 103-169 (175)
349 COG1850 RbcL Ribulose 1,5-bisp 38.0 1E+02 0.0022 33.4 7.1 102 243-375 168-279 (429)
350 PRK09432 metF 5,10-methylenete 37.7 4.5E+02 0.0098 26.6 11.4 118 143-285 85-203 (296)
351 PRK15108 biotin synthase; Prov 37.7 1.8E+02 0.004 29.9 8.7 96 288-414 43-149 (345)
352 PRK13753 dihydropteroate synth 37.6 1.1E+02 0.0025 31.1 7.1 85 332-419 24-127 (279)
353 PRK13813 orotidine 5'-phosphat 37.4 53 0.0011 30.7 4.5 41 329-372 12-57 (215)
354 PRK12655 fructose-6-phosphate 37.1 43 0.00094 32.7 4.0 51 243-294 108-166 (220)
355 cd04824 eu_ALAD_PBGS_cysteine_ 37.1 76 0.0016 33.2 5.9 142 92-264 153-309 (320)
356 KOG1579 Homocysteine S-methylt 37.1 27 0.0006 36.3 2.7 63 341-417 10-72 (317)
357 TIGR01921 DAP-DH diaminopimela 37.1 59 0.0013 33.7 5.1 84 249-340 74-182 (324)
358 PRK08255 salicylyl-CoA 5-hydro 37.0 1.7E+02 0.0037 33.1 9.1 95 159-267 553-659 (765)
359 TIGR00007 phosphoribosylformim 36.8 2.2E+02 0.0047 26.8 8.5 75 316-416 18-99 (230)
360 TIGR01306 GMP_reduct_2 guanosi 36.7 1.2E+02 0.0025 31.6 7.1 47 332-378 92-145 (321)
361 cd01837 SGNH_plant_lipase_like 36.7 79 0.0017 31.2 5.8 60 158-218 165-241 (315)
362 PRK06256 biotin synthase; Vali 36.6 2.3E+02 0.005 28.3 9.1 66 332-416 93-167 (336)
363 cd07947 DRE_TIM_Re_CS Clostrid 36.6 1.1E+02 0.0025 30.6 6.9 102 148-270 67-174 (279)
364 PF06838 Met_gamma_lyase: Meth 36.3 41 0.00089 36.0 3.9 29 199-227 177-205 (403)
365 PF04551 GcpE: GcpE protein; 36.0 31 0.00068 36.4 3.0 50 239-293 28-80 (359)
366 cd06325 PBP1_ABC_uncharacteriz 36.0 91 0.002 28.7 5.8 38 342-379 180-220 (281)
367 PLN02489 homocysteine S-methyl 36.0 30 0.00065 35.5 2.8 24 394-417 51-74 (335)
368 cd00959 DeoC 2-deoxyribose-5-p 35.9 3.7E+02 0.0081 25.2 10.0 97 158-281 70-172 (203)
369 TIGR00737 nifR3_yhdG putative 35.6 1E+02 0.0022 30.8 6.5 32 344-375 158-197 (319)
370 cd08602 GDPD_ScGlpQ1_like Glyc 35.6 55 0.0012 33.0 4.6 52 360-419 257-308 (309)
371 PRK08195 4-hyroxy-2-oxovalerat 35.5 86 0.0019 32.2 6.0 82 151-266 139-221 (337)
372 PF01964 ThiC: ThiC family; I 35.5 1E+02 0.0022 33.4 6.7 96 331-432 74-175 (420)
373 TIGR00190 thiC thiamine biosyn 35.4 2.4E+02 0.0053 30.6 9.4 97 329-432 73-176 (423)
374 PRK08673 3-deoxy-7-phosphohept 35.4 4.8E+02 0.01 27.3 11.4 156 228-393 92-291 (335)
375 PF09370 TIM-br_sig_trns: TIM- 35.3 33 0.00072 34.9 3.0 72 194-265 63-176 (268)
376 PRK06256 biotin synthase; Vali 35.3 1.6E+02 0.0034 29.5 7.7 54 151-215 88-143 (336)
377 PRK08195 4-hyroxy-2-oxovalerat 35.2 1.2E+02 0.0026 31.2 7.0 106 160-298 91-209 (337)
378 TIGR02990 ectoine_eutA ectoine 35.2 1.2E+02 0.0027 29.8 6.8 118 255-387 97-223 (239)
379 PRK07226 fructose-bisphosphate 35.1 1.8E+02 0.004 28.5 8.0 96 158-281 94-193 (267)
380 cd06268 PBP1_ABC_transporter_L 35.1 2.2E+02 0.0047 25.7 8.0 94 285-385 135-231 (298)
381 cd02940 DHPD_FMN Dihydropyrimi 35.1 1.3E+02 0.0029 29.9 7.1 43 358-416 156-198 (299)
382 cd08612 GDPD_GDE4 Glycerophosp 35.0 88 0.0019 31.1 5.8 48 360-428 252-299 (300)
383 COG0167 PyrD Dihydroorotate de 35.0 5.4E+02 0.012 26.7 11.9 118 131-288 162-300 (310)
384 PRK13398 3-deoxy-7-phosphohept 34.8 2.1E+02 0.0045 28.7 8.4 161 244-414 39-243 (266)
385 PRK08185 hypothetical protein; 34.7 58 0.0013 33.0 4.6 74 330-408 149-243 (283)
386 PRK10550 tRNA-dihydrouridine s 34.5 2.1E+02 0.0045 29.1 8.5 76 329-417 70-167 (312)
387 PF01884 PcrB: PcrB family; I 34.5 75 0.0016 31.5 5.2 49 187-263 160-208 (230)
388 PLN02361 alpha-amylase 34.3 1.6E+02 0.0034 31.3 7.8 60 157-223 29-100 (401)
389 cd04739 DHOD_like Dihydroorota 34.3 2.3E+02 0.0051 28.7 8.8 117 131-287 164-295 (325)
390 cd03465 URO-D_like The URO-D _ 34.3 33 0.00071 33.6 2.7 68 199-269 111-191 (330)
391 TIGR00742 yjbN tRNA dihydrouri 34.1 2.1E+02 0.0046 29.3 8.5 85 152-263 131-220 (318)
392 COG0320 LipA Lipoate synthase 34.1 54 0.0012 33.9 4.2 53 352-416 190-246 (306)
393 COG1794 RacX Aspartate racemas 34.1 62 0.0013 32.4 4.5 111 241-368 57-187 (230)
394 PRK08185 hypothetical protein; 34.1 1.2E+02 0.0026 30.8 6.6 123 160-311 81-220 (283)
395 cd02809 alpha_hydroxyacid_oxid 33.9 4.9E+02 0.011 25.9 12.3 35 344-378 140-180 (299)
396 cd04729 NanE N-acetylmannosami 33.6 1.6E+02 0.0035 27.7 7.1 102 235-375 19-128 (219)
397 PRK15072 bifunctional D-altron 33.6 5.7E+02 0.012 26.7 13.9 133 158-293 130-314 (404)
398 TIGR01859 fruc_bis_ald_ fructo 33.6 81 0.0018 31.7 5.4 20 160-179 87-106 (282)
399 COG0584 UgpQ Glycerophosphoryl 33.6 2.5E+02 0.0053 26.7 8.4 48 360-428 208-255 (257)
400 cd07948 DRE_TIM_HCS Saccharomy 33.5 48 0.001 32.8 3.7 80 146-263 131-213 (262)
401 PRK12346 transaldolase A; Prov 33.5 57 0.0012 33.7 4.4 22 244-265 155-176 (316)
402 cd08561 GDPD_cytoplasmic_ScUgp 33.5 91 0.002 29.7 5.5 48 359-427 202-249 (249)
403 PRK05927 hypothetical protein; 33.5 89 0.0019 32.3 5.8 83 319-416 72-162 (350)
404 cd00953 KDG_aldolase KDG (2-ke 33.4 96 0.0021 30.6 5.8 47 330-378 75-129 (279)
405 PRK07534 methionine synthase I 33.2 36 0.00077 35.1 2.9 24 394-417 41-64 (336)
406 PRK10336 DNA-binding transcrip 33.2 2.2E+02 0.0047 24.9 7.5 64 329-395 30-97 (219)
407 cd04723 HisA_HisF Phosphoribos 33.2 2.5E+02 0.0055 27.0 8.5 80 316-421 19-111 (233)
408 TIGR01235 pyruv_carbox pyruvat 33.2 2.3E+02 0.005 34.2 9.7 114 159-307 691-817 (1143)
409 PRK06843 inosine 5-monophospha 33.2 1.4E+02 0.0031 31.9 7.3 46 333-378 152-202 (404)
410 PRK06552 keto-hydroxyglutarate 33.0 1.4E+02 0.003 29.0 6.6 151 158-416 26-181 (213)
411 PRK12376 putative translaldola 32.9 42 0.00092 33.2 3.2 93 192-293 67-177 (236)
412 cd00954 NAL N-Acetylneuraminic 32.9 3.9E+02 0.0084 26.4 9.9 26 153-179 18-44 (288)
413 PRK05848 nicotinate-nucleotide 32.9 2.3E+02 0.0049 28.7 8.4 56 197-282 166-222 (273)
414 PRK00694 4-hydroxy-3-methylbut 32.8 46 0.00099 37.4 3.7 51 238-293 41-94 (606)
415 cd06289 PBP1_MalI_like Ligand- 32.8 82 0.0018 28.6 4.9 77 297-377 9-86 (268)
416 PRK06015 keto-hydroxyglutarate 32.7 3.3E+02 0.0072 26.4 9.1 79 331-429 14-95 (201)
417 cd01391 Periplasmic_Binding_Pr 32.7 88 0.0019 27.2 4.9 79 298-379 11-91 (269)
418 PRK10529 DNA-binding transcrip 32.6 2.2E+02 0.0047 25.3 7.4 64 329-395 31-97 (225)
419 PTZ00411 transaldolase-like pr 32.6 60 0.0013 33.8 4.4 23 243-265 165-187 (333)
420 cd08565 GDPD_pAtGDE_like Glyce 32.5 92 0.002 29.9 5.4 55 344-420 175-231 (235)
421 PF01791 DeoC: DeoC/LacD famil 32.5 6.3 0.00014 37.5 -2.5 99 158-264 113-226 (236)
422 TIGR01769 GGGP geranylgeranylg 32.5 94 0.002 30.2 5.4 50 322-376 4-59 (205)
423 PLN02229 alpha-galactosidase 32.1 2.7E+02 0.0058 30.2 9.1 117 150-285 72-208 (427)
424 cd00957 Transaldolase_TalAB Tr 32.1 54 0.0012 33.8 3.9 23 243-265 153-175 (313)
425 PF14681 UPRTase: Uracil phosp 32.1 76 0.0016 30.2 4.7 48 158-223 136-185 (207)
426 PRK05567 inosine 5'-monophosph 32.0 1E+02 0.0022 33.1 6.1 54 343-416 237-295 (486)
427 PRK00230 orotidine 5'-phosphat 32.0 1.1E+02 0.0023 29.6 5.7 37 329-368 11-52 (230)
428 PF00215 OMPdecase: Orotidine 31.8 52 0.0011 31.2 3.5 72 323-416 7-90 (226)
429 PRK05443 polyphosphate kinase; 31.5 1.7E+02 0.0036 33.5 7.9 161 243-419 244-430 (691)
430 PLN02417 dihydrodipicolinate s 31.5 1.1E+02 0.0024 30.2 5.9 50 329-380 79-135 (280)
431 PRK00668 ndk mulitfunctional n 31.5 30 0.00065 30.8 1.7 46 262-307 7-54 (134)
432 cd08560 GDPD_EcGlpQ_like_1 Gly 31.4 5E+02 0.011 27.2 10.8 58 358-420 280-347 (356)
433 PLN02757 sirohydrochlorine fer 31.4 3.8E+02 0.0083 24.7 9.0 51 158-216 59-109 (154)
434 TIGR00977 LeuA_rel 2-isopropyl 31.2 5.2E+02 0.011 28.4 11.4 149 244-415 21-227 (526)
435 PRK05660 HemN family oxidoredu 31.2 3.1E+02 0.0067 28.4 9.2 102 153-296 140-244 (378)
436 cd08563 GDPD_TtGDE_like Glycer 31.2 4.5E+02 0.0097 24.7 10.4 112 270-419 117-229 (230)
437 cd00959 DeoC 2-deoxyribose-5-p 31.2 4.5E+02 0.0097 24.7 12.4 130 240-420 14-155 (203)
438 TIGR00035 asp_race aspartate r 31.2 2E+02 0.0043 27.5 7.3 176 210-411 34-229 (229)
439 PLN02389 biotin synthase 31.1 96 0.0021 32.6 5.6 70 319-415 112-192 (379)
440 cd07945 DRE_TIM_CMS Leptospira 31.0 87 0.0019 31.3 5.1 91 160-270 77-171 (280)
441 TIGR01696 deoB phosphopentomut 30.8 1.1E+02 0.0023 32.7 5.9 76 153-231 210-288 (381)
442 PRK10200 putative racemase; Pr 30.8 1.9E+02 0.0041 28.0 7.2 56 371-426 35-96 (230)
443 cd03326 MR_like_1 Mandelate ra 30.7 5.4E+02 0.012 26.9 11.0 110 158-282 163-306 (385)
444 PRK13575 3-dehydroquinate dehy 30.6 2.4E+02 0.0052 27.7 7.9 88 332-419 16-133 (238)
445 smart00518 AP2Ec AP endonuclea 30.5 2.5E+02 0.0055 26.7 8.0 95 153-264 6-102 (273)
446 PRK07807 inosine 5-monophospha 30.5 1.1E+02 0.0025 33.1 6.2 57 322-378 215-276 (479)
447 TIGR00126 deoC deoxyribose-pho 30.4 4E+02 0.0086 25.9 9.3 97 158-281 71-173 (211)
448 COG0413 PanB Ketopantoate hydr 30.2 6.3E+02 0.014 26.1 11.1 159 166-375 31-201 (268)
449 cd00740 MeTr MeTr subgroup of 30.1 3.4E+02 0.0074 26.9 8.9 88 330-419 23-127 (252)
450 PLN02925 4-hydroxy-3-methylbut 29.9 55 0.0012 37.5 3.8 49 239-292 107-158 (733)
451 PRK10703 DNA-binding transcrip 29.9 1.9E+02 0.0041 28.0 7.0 76 298-376 70-145 (341)
452 PRK10415 tRNA-dihydrouridine s 29.8 1.3E+02 0.0029 30.5 6.2 33 343-375 159-199 (321)
453 cd00854 NagA N-acetylglucosami 29.8 3E+02 0.0065 28.1 8.8 130 245-393 71-208 (374)
454 PF13653 GDPD_2: Glycerophosph 29.8 45 0.00097 23.4 2.0 18 402-419 11-28 (30)
455 PLN02746 hydroxymethylglutaryl 29.7 86 0.0019 32.8 4.9 82 151-266 192-273 (347)
456 cd08573 GDPD_GDE1 Glycerophosp 29.7 94 0.002 30.3 5.0 53 344-418 203-256 (258)
457 TIGR01928 menC_lowGC/arch o-su 29.6 5.3E+02 0.012 25.9 10.4 119 157-292 134-279 (324)
458 TIGR03217 4OH_2_O_val_ald 4-hy 29.6 2.1E+02 0.0045 29.5 7.6 195 160-403 90-310 (333)
459 TIGR01302 IMP_dehydrog inosine 29.5 1.5E+02 0.0033 31.5 6.8 62 334-415 224-290 (450)
460 PRK08318 dihydropyrimidine deh 29.5 1.4E+02 0.003 31.2 6.4 44 357-416 155-198 (420)
461 PF02679 ComA: (2R)-phospho-3- 29.5 47 0.001 33.2 2.9 77 158-263 85-164 (244)
462 cd04747 OYE_like_5_FMN Old yel 29.4 3.3E+02 0.0072 28.4 9.1 100 158-267 145-256 (361)
463 cd00423 Pterin_binding Pterin 29.4 5.5E+02 0.012 25.1 11.9 176 244-425 22-252 (258)
464 PRK06843 inosine 5-monophospha 29.3 4.2E+02 0.0091 28.5 10.0 118 157-290 152-284 (404)
465 cd02810 DHOD_DHPD_FMN Dihydroo 29.2 3.2E+02 0.0068 26.6 8.5 87 158-269 112-199 (289)
466 PRK07379 coproporphyrinogen II 29.2 1.4E+02 0.0031 31.1 6.4 100 158-295 152-255 (400)
467 PRK07107 inosine 5-monophospha 29.2 2E+02 0.0044 31.4 7.8 67 158-263 242-309 (502)
468 PRK10710 DNA-binding transcrip 29.2 2.7E+02 0.0058 24.8 7.5 64 329-395 40-106 (240)
469 cd03307 Mta_CmuA_like MtaA_Cmu 29.1 80 0.0017 31.5 4.5 70 198-270 113-195 (326)
470 PRK09441 cytoplasmic alpha-amy 29.1 1.6E+02 0.0035 31.3 7.0 64 157-224 22-106 (479)
471 TIGR01091 upp uracil phosphori 29.0 1.5E+02 0.0033 28.1 6.1 49 158-224 137-185 (207)
472 KOG0564 5,10-methylenetetrahyd 28.9 1.7E+02 0.0036 32.8 7.0 95 158-270 93-192 (590)
473 TIGR00284 dihydropteroate synt 28.7 1.5E+02 0.0032 32.6 6.7 83 334-418 166-258 (499)
474 PRK13305 sgbH 3-keto-L-gulonat 28.7 1E+02 0.0023 29.9 5.1 43 329-374 12-60 (218)
475 cd00537 MTHFR Methylenetetrahy 28.7 3.3E+02 0.0071 26.6 8.5 84 334-428 73-180 (274)
476 cd02803 OYE_like_FMN_family Ol 28.7 3.1E+02 0.0067 27.1 8.4 66 343-416 151-246 (327)
477 TIGR00874 talAB transaldolase. 28.5 76 0.0016 32.9 4.3 23 243-265 153-175 (317)
478 KOG0369 Pyruvate carboxylase [ 28.5 67 0.0014 37.3 4.1 101 202-330 752-865 (1176)
479 PRK08999 hypothetical protein; 28.4 2.3E+02 0.0049 27.9 7.4 63 329-415 233-305 (312)
480 PF00218 IGPS: Indole-3-glycer 28.4 1.3E+02 0.0028 30.1 5.8 55 344-417 79-137 (254)
481 PRK02048 4-hydroxy-3-methylbut 28.2 63 0.0014 36.4 3.8 50 238-292 37-89 (611)
482 PRK09836 DNA-binding transcrip 28.1 4.3E+02 0.0093 23.5 9.3 80 329-411 30-119 (227)
483 cd01545 PBP1_SalR Ligand-bindi 28.1 87 0.0019 28.6 4.2 76 297-376 9-86 (270)
484 PRK00077 eno enolase; Provisio 28.1 2.8E+02 0.006 29.5 8.4 129 271-418 217-363 (425)
485 PRK04296 thymidine kinase; Pro 27.9 1.9E+02 0.0042 26.7 6.5 84 334-420 18-115 (190)
486 TIGR01769 GGGP geranylgeranylg 27.8 3.1E+02 0.0068 26.6 8.1 68 331-417 132-204 (205)
487 TIGR01949 AroFGH_arch predicte 27.8 2.8E+02 0.0061 27.0 7.8 97 159-282 92-190 (258)
488 PRK10499 PTS system N,N'-diace 27.7 1.3E+02 0.0029 26.0 5.0 58 344-413 48-106 (106)
489 PRK11475 DNA-binding transcrip 27.5 2.1E+02 0.0046 27.1 6.8 78 329-409 23-114 (207)
490 TIGR01387 cztR_silR_copR heavy 27.4 3.6E+02 0.0077 23.5 7.8 64 329-395 28-95 (218)
491 cd03325 D-galactonate_dehydrat 27.3 6.7E+02 0.015 25.5 11.5 127 158-294 126-285 (352)
492 TIGR00035 asp_race aspartate r 27.3 2.3E+02 0.005 27.0 7.1 47 370-416 34-80 (229)
493 cd00956 Transaldolase_FSA Tran 27.3 4.4E+02 0.0095 25.3 9.0 97 271-378 7-109 (211)
494 PRK11143 glpQ glycerophosphodi 27.2 1.4E+02 0.0031 30.9 6.0 61 360-430 294-354 (355)
495 COG0176 MipB Transaldolase [Ca 27.2 25 0.00054 35.1 0.6 102 192-298 72-183 (239)
496 cd03313 enolase Enolase: Enola 27.1 2.6E+02 0.0056 29.5 7.9 131 271-419 214-364 (408)
497 PF05853 DUF849: Prokaryotic p 27.1 74 0.0016 31.7 3.8 57 153-216 23-79 (272)
498 TIGR00289 conserved hypothetic 27.1 1.5E+02 0.0031 29.2 5.7 45 359-417 47-91 (222)
499 PRK09240 thiH thiamine biosynt 27.1 1.9E+02 0.0041 30.0 6.9 93 288-416 75-178 (371)
500 PRK06245 cofG FO synthase subu 27.1 2.5E+02 0.0055 28.2 7.6 26 152-178 40-65 (336)
No 1
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=100.00 E-value=2.8e-154 Score=1127.66 Aligned_cols=325 Identities=54% Similarity=0.886 Sum_probs=317.8
Q ss_pred CCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 014017 100 LPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178 (432)
Q Consensus 100 ~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFg 178 (432)
+.+.+|+||+|+++++|+|++||+|+++||||||||.||++ +++|+|||||||||++ .|++++++++++||++|+|||
T Consensus 4 ~~~~~R~RRlRk~~~~R~lv~Et~L~~~dLI~PiFV~eg~~~~~~I~SMPgv~r~s~d-~l~~~~~~~~~lGi~av~LFg 82 (330)
T COG0113 4 TFPFRRPRRLRKSPALRRLVRETRLTPNDLIYPIFVVEGENIKEEIPSMPGVYRYSLD-RLVEEAEELVDLGIPAVILFG 82 (330)
T ss_pred cchhhhhhhccCCHHHHHHHHhcCCCHHHeeEeEEEecCCCCccccCCCCCceeccHH-HHHHHHHHHHhcCCCEEEEeC
Confidence 45568999999999999999999999999999999999985 7999999999999997 699999999999999999999
Q ss_pred cCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc
Q 014017 179 KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA 258 (432)
Q Consensus 179 vi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~A 258 (432)
++.++.||+.||+|||+||+||||+|.||+.||||+|||||||||||+||||||++++|.|+||+||++|+||||+||+|
T Consensus 83 vp~~~~Kd~~gs~A~~~~givqravr~ik~~~p~l~iitDvcLceyT~HGHcGil~~~~~V~ND~Tle~l~k~Avs~AeA 162 (330)
T COG0113 83 VPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFPELVVITDVCLCEYTDHGHCGILDDGGYVDNDETLEILAKQAVSQAEA 162 (330)
T ss_pred CCcccccCcccccccCCCChHHHHHHHHHHhCCCeEEEeeecccCCcCCCccccccCCCeecchHHHHHHHHHHHHHHHc
Confidence 86566899999999999999999999999999999999999999999999999998777999999999999999999999
Q ss_pred CCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHH
Q 014017 259 GADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVE 338 (432)
Q Consensus 259 GADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre 338 (432)
|||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||| |+|.+|||||
T Consensus 163 GAdivAPSdMMDGrV~aIR~aLd~ag~~~v~IMsYsaKyASafYGPFRdAa~Sap~~gdrktYQmD----paN~~EAlrE 238 (330)
T COG0113 163 GADIVAPSDMMDGRVGAIREALDEAGFIDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMD----PANRREALRE 238 (330)
T ss_pred CCCeecccccccchHHHHHHHHHHcCCCcceeeehhHHHhhhccccHHHHhhcccccCCcceeccC----CcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 339 AQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 339 ~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+++|++|||||||||||++|||||+++|++|++|++||||||||+|||||+++||||++++++|||+||||||||+||||
T Consensus 239 ~~lD~~EGAD~lMVKPal~YLDIi~~vk~~~~lP~~AYqVSGEYaMikAAa~nGwide~~~vlEsL~~~kRAGAd~IiTY 318 (330)
T COG0113 239 IELDIEEGADILMVKPALPYLDIIRRVKEEFNLPVAAYQVSGEYAMIKAAAQNGWIDEEKVVLESLTSIKRAGADLIITY 318 (330)
T ss_pred HHhhHhcCCcEEEEcCCchHHHHHHHHHHhcCCCeEEEecchHHHHHHHHHHcCCcchHHHHHHHHHHHHhcCCCEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhc
Q 014017 419 FALQAARCLCG 429 (432)
Q Consensus 419 fA~~~a~wL~~ 429 (432)
||+|+|+||++
T Consensus 319 fA~e~a~~L~~ 329 (330)
T COG0113 319 FAKEVAEWLKE 329 (330)
T ss_pred cHHHHHHHhhc
Confidence 99999999975
No 2
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=100.00 E-value=1.7e-153 Score=1127.32 Aligned_cols=319 Identities=60% Similarity=0.970 Sum_probs=313.3
Q ss_pred CCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 014017 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (432)
Q Consensus 104 ~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~ 182 (432)
+|+||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||++ .+++++++++++||++|+|||++|+
T Consensus 1 ~R~RRlR~~~~~R~lv~Et~l~~~dlI~PlFv~e~~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~~v~lFgv~~~ 79 (320)
T cd04823 1 TRPRRNRRTDALRRLVRETTLSPDDLILPLFVHEGENQREPIPSMPGVFRLSID-ELLKEAEEAVDLGIPAVALFPVTPP 79 (320)
T ss_pred CCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHcCCCEEEEecCCCc
Confidence 5999999999999999999999999999999999975 7899999999999996 7999999999999999999999888
Q ss_pred CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 014017 183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (432)
Q Consensus 183 ~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi 262 (432)
++||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|.||||+||++|++|||+||+|||||
T Consensus 80 ~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc~YT~hGHcGil~-~~~idND~Tl~~L~~~Avs~A~AGADi 158 (320)
T cd04823 80 ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALDPYTSHGHDGIVR-DGGILNDETVEVLCKQALVQAEAGADI 158 (320)
T ss_pred ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCcCHHHHHHHHHHHHHHHHhCCCE
Confidence 8899999999999999999999999999999999999999999999999996 466999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhc
Q 014017 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD 342 (432)
Q Consensus 263 VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~D 342 (432)
|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||| |+|++|||+|+++|
T Consensus 159 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmd----p~n~~eAlre~~~D 234 (320)
T cd04823 159 VAPSDMMDGRIGAIREALDAEGFTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMD----PANSREALREVALD 234 (320)
T ss_pred EEcccchhhHHHHHHHHHHHCCCCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCC----CCCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHH
Q 014017 343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 422 (432)
Q Consensus 343 i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~ 422 (432)
++|||||||||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+||||||+|
T Consensus 235 i~EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~ikRAGAd~IiTY~A~~ 314 (320)
T cd04823 235 IAEGADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAMLKAAAQNGWLDEDKVMLESLLAFKRAGADGILTYFAKE 314 (320)
T ss_pred HHhCCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEeeccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 014017 423 AARCLC 428 (432)
Q Consensus 423 ~a~wL~ 428 (432)
+|+||+
T Consensus 315 ~a~wl~ 320 (320)
T cd04823 315 AAEWLR 320 (320)
T ss_pred HHHhhC
Confidence 999994
No 3
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=100.00 E-value=2.2e-153 Score=1128.91 Aligned_cols=321 Identities=58% Similarity=0.952 Sum_probs=295.7
Q ss_pred CCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecC
Q 014017 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKV 180 (432)
Q Consensus 102 ~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi 180 (432)
+.+|+||+|+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+|
T Consensus 2 p~~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~v~~~~~~GI~~v~lFgvi 80 (324)
T PF00490_consen 2 PNTRPRRLRKNPALRDLVRETRLSPSDLIYPLFVVEGENEKEPISSMPGVYRYSID-SLVKEVEEAVDLGIRAVILFGVI 80 (324)
T ss_dssp TSS-GGGGSSSHHHHHHHCST-B-GGGEEEEEEEESSSSSEEEETTSTTEEEEEHH-HHHHHHHHHHHTT--EEEEEEE-
T ss_pred CCccCCCCCCCHHHHHHHhcCCCCHHHeEEEEEEecCCCcceeccCCCCeeeeCHH-HHHHHHHHHHHCCCCEEEEEeeC
Confidence 358999999999999999999999999999999999996 7999999999999996 79999999999999999999999
Q ss_pred CCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee-cCCCccccHHHHHHHHHHHHHHHHcC
Q 014017 181 PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV-REDGVIMNDETVHQLCKQAVSQARAG 259 (432)
Q Consensus 181 ~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl-~~~g~IdND~Tl~~Lak~Avs~A~AG 259 (432)
++++||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+ +++|.||||+||++|+||||+||+||
T Consensus 81 ~~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AG 160 (324)
T PF00490_consen 81 DPSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLCEYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAG 160 (324)
T ss_dssp SCSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-STTTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT
T ss_pred CcccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccccccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999 57999999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHH
Q 014017 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEA 339 (432)
Q Consensus 260 ADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~ 339 (432)
||||||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||| |+|++|||||+
T Consensus 161 ADiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmd----p~N~~EAlre~ 236 (324)
T PF00490_consen 161 ADIVAPSDMMDGRVGAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMD----PANRREALREA 236 (324)
T ss_dssp -SEEEE-S--TTHHHHHHHHHHHTTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-----TT-HHHHHHHH
T ss_pred CCeeccccccCCHHHHHHHHHHhCCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCC----CccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 340 QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 340 ~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
++|++|||||||||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+|||||
T Consensus 237 ~~D~~EGAD~lMVKPal~YLDIi~~~k~~~~~P~~aYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYf 316 (324)
T PF00490_consen 237 ELDIEEGADILMVKPALPYLDIIRRVKERFDLPVAAYQVSGEYAMIKAAAQNGWIDEKRVVLESLLSIKRAGADIIITYF 316 (324)
T ss_dssp HHHHHTT-SEEEEESSGGGHHHHHHHHHHCTS-EEEEETHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-SEEEETT
T ss_pred hhhHhhCCCEEEeecchhHHHHHHHHHHhcCCCEEEEEehHHHHHHHHHHHCCCcchhhHHHHHHHHHHHcCCCEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 014017 420 ALQAARCL 427 (432)
Q Consensus 420 A~~~a~wL 427 (432)
|+|+|+||
T Consensus 317 A~~~a~~L 324 (324)
T PF00490_consen 317 AKEAAKWL 324 (324)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhC
Confidence 99999998
No 4
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=100.00 E-value=6.2e-152 Score=1118.21 Aligned_cols=320 Identities=57% Similarity=0.903 Sum_probs=313.6
Q ss_pred CCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeec
Q 014017 101 PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (432)
Q Consensus 101 ~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgv 179 (432)
.+.+|+||+|+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||++ ++++++++++++||++|+|||+
T Consensus 3 ~~~~R~RRlR~~~~~R~lv~Et~l~~~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d-~l~~~v~~~~~~Gi~av~LFgv 81 (323)
T PRK09283 3 FPFTRPRRLRKTAALRRLVRETRLTPNDLIYPLFVVEGENEREEIPSMPGVYRLSID-LLVKEAEEAVELGIPAVALFGV 81 (323)
T ss_pred CcCcCCcccCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCc
Confidence 3558999999999999999999999999999999999986 7999999999999997 6999999999999999999997
Q ss_pred CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 014017 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (432)
Q Consensus 180 i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AG 259 (432)
| +.||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+++ |.||||+||++|++|||+||+||
T Consensus 82 -~-~~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~-g~idND~Tl~~L~~~Al~~A~AG 158 (323)
T PRK09283 82 -P-ELKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILED-GYVDNDETLELLAKQALSQAEAG 158 (323)
T ss_pred -C-CCCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccC-CcCcCHHHHHHHHHHHHHHHHhC
Confidence 6 57999999999999999999999999999999999999999999999999975 99999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHH
Q 014017 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEA 339 (432)
Q Consensus 260 ADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~ 339 (432)
||+|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+|||||||||| |+|++|||||+
T Consensus 159 aDiVAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmd----p~n~~eAlre~ 234 (323)
T PRK09283 159 ADIVAPSDMMDGRVGAIREALDEAGFTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMD----PANRREALREV 234 (323)
T ss_pred CCEEEcccccccHHHHHHHHHHHCCCCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCC----CCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 340 QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 340 ~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
++|++|||||||||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+|||||
T Consensus 235 ~~D~~EGAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D~~~~~~Esl~~~kRAGAd~IiTYf 314 (323)
T PRK09283 235 ALDIEEGADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWIDEERVVLESLLSIKRAGADGILTYF 314 (323)
T ss_pred HhhHHhCCCEEEEcCCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 014017 420 ALQAARCLC 428 (432)
Q Consensus 420 A~~~a~wL~ 428 (432)
|+|+|+||+
T Consensus 315 A~~~a~~L~ 323 (323)
T PRK09283 315 AKDAARWLR 323 (323)
T ss_pred HHHHHHhhC
Confidence 999999995
No 5
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=100.00 E-value=1.5e-151 Score=1111.37 Aligned_cols=313 Identities=56% Similarity=0.905 Sum_probs=307.9
Q ss_pred CCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCC
Q 014017 107 RRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALK 185 (432)
Q Consensus 107 RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~K 185 (432)
||||+|+++|+|++||+|+++||||||||+||.+ ++||+|||||||||++ .+++++++++++||++|+|||+ | +.|
T Consensus 1 RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~sMPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv-~-~~K 77 (314)
T cd00384 1 RRLRRSPALRDLVRETRLSPDDLIYPLFVVEGIDEKEEISSMPGVYRLSVD-SLVEEAEELADLGIRAVILFGI-P-EHK 77 (314)
T ss_pred CCCCCChHHHHHHHcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEECC-C-CCC
Confidence 8999999999999999999999999999999975 7899999999999996 7999999999999999999996 6 469
Q ss_pred CcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014017 186 SPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 186 d~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
|+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|.||||+||++|+||||+||+||||||||
T Consensus 78 d~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc~YT~hGHcGil~-~~~idND~Tl~~L~k~Als~A~AGADiVAP 156 (314)
T cd00384 78 DEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLCEYTDHGHCGILK-DDYVDNDATLELLAKIAVSHAEAGADIVAP 156 (314)
T ss_pred CCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceecc-CCcCccHHHHHHHHHHHHHHHHcCCCeeec
Confidence 9999999999999999999999999999999999999999999999996 589999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhc
Q 014017 266 SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESE 345 (432)
Q Consensus 266 SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~E 345 (432)
||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||| |+|++|||||+++|++|
T Consensus 157 SdMMDGrV~aIR~aLd~~g~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmd----pan~~eAlre~~~D~~E 232 (314)
T cd00384 157 SDMMDGRVAAIREALDEAGFSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMD----PANRREALREVELDIEE 232 (314)
T ss_pred ccccccHHHHHHHHHHHCCCCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCC----CCCHHHHHHHHHhhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHH
Q 014017 346 GADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAAR 425 (432)
Q Consensus 346 GAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~ 425 (432)
||||||||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+||||||+|+|+
T Consensus 233 GAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~id~~~~~~Esl~~~kRAGAd~IiTYfA~~~a~ 312 (314)
T cd00384 233 GADILMVKPALAYLDIIRDVRERFDLPVAAYNVSGEYAMIKAAAKNGWIDEERVVLESLTSIKRAGADLIITYFAKDAAR 312 (314)
T ss_pred CCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEEeecHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 014017 426 CL 427 (432)
Q Consensus 426 wL 427 (432)
||
T Consensus 313 ~l 314 (314)
T cd00384 313 WL 314 (314)
T ss_pred hC
Confidence 97
No 6
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=100.00 E-value=5.6e-151 Score=1109.39 Aligned_cols=314 Identities=46% Similarity=0.778 Sum_probs=308.7
Q ss_pred CCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCC
Q 014017 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPD 182 (432)
Q Consensus 104 ~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~ 182 (432)
+|+||+|+++++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .+++++++++++||++|+|||+ |+
T Consensus 8 ~R~RRlR~~~~~R~lv~Et~l~~~dLI~PlFV~eg~~~~~~I~smPg~~r~sid-~l~~~~~~~~~~Gi~~v~lFgv-~~ 85 (322)
T PRK13384 8 RRLRRLRRSEAMRDLVRETEVSLSDLIYPIFIEEHITDAVPISTLPGISRLPES-ALADEIERLYALGIRYVMPFGI-SH 85 (322)
T ss_pred cCCCcCCCCHHHHHHHhcCCCCHHHceeeEEEecCCCCceecCCCCCcceECHH-HHHHHHHHHHHcCCCEEEEeCC-CC
Confidence 7999999999999999999999999999999999985 7899999999999997 7999999999999999999996 64
Q ss_pred CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 014017 183 ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (432)
Q Consensus 183 ~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi 262 (432)
.||+.||+|||+||++|||||.||++||||+|||||||||||+||||||++ +|.||||+||++|+||||+||+|||||
T Consensus 86 -~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~-~g~i~ND~Tl~~L~~~Als~A~AGADi 163 (322)
T PRK13384 86 -HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLH-NDEVDNDATVENLVKQSVTAAKAGADM 163 (322)
T ss_pred -CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHHHHHcCCCe
Confidence 699999999999999999999999999999999999999999999999996 589999999999999999999999999
Q ss_pred ecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhc
Q 014017 263 VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD 342 (432)
Q Consensus 263 VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~D 342 (432)
|||||||||||++||++||++||++|+|||||+||||+||||||||++|+|+ ||||||||| |+|++|||||+++|
T Consensus 164 VAPSdMMDGrV~aIR~aLd~~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~-gDrksYQmd----p~n~~eAlre~~~D 238 (322)
T PRK13384 164 LAPSAMMDGQVKAIRQGLDAAGFEHVAILAHSAKFASSFYGPFRAAVDCELS-GDRKSYQLD----YANGRQALLEALLD 238 (322)
T ss_pred EecccccccHHHHHHHHHHHCCCCCCceeehhHhhhhhhcchHHHHhcCCCC-CCcccccCC----CCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999998 999999999 99999999999999
Q ss_pred hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHH
Q 014017 343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQ 422 (432)
Q Consensus 343 i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~ 422 (432)
++|||||||||||++|||||+++|++|++||+||||||||+|||+|+++||+|++++++|+|++|||||||+||||||+|
T Consensus 239 ~~EGAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d~~~~~~Esl~~~kRAGAd~IiTYfA~~ 318 (322)
T PRK13384 239 EAEGADILMVKPGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALDERAVVTETLGGLKRAGADLIVSYYAKQ 318 (322)
T ss_pred HhhCCCEEEEcCCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCCEEeehhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 014017 423 AARC 426 (432)
Q Consensus 423 ~a~w 426 (432)
+|+|
T Consensus 319 ~a~w 322 (322)
T PRK13384 319 YAQW 322 (322)
T ss_pred HhhC
Confidence 9998
No 7
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=100.00 E-value=5.2e-149 Score=1094.74 Aligned_cols=312 Identities=43% Similarity=0.716 Sum_probs=305.3
Q ss_pred CChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-
Q 014017 111 KSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT- 188 (432)
Q Consensus 111 ~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~- 188 (432)
.|+++|+|++||+|+++||||||||+||++ ++||+|||||||||++ .+++++++++++||++|+|||+.+++.||+.
T Consensus 5 ~~~~~R~lv~Et~L~~~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d-~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~ 83 (320)
T cd04824 5 AHPLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVN-RLEEFLRPLVAKGLRSVILFGVPLKPGKDDRS 83 (320)
T ss_pred CCHHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCCCccccCCcCc
Confidence 589999999999999999999999999985 7899999999999997 7999999999999999999997333569999
Q ss_pred cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 189 gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
||+|||+||++|||||.||++||||+|||||||||||+||||||++++|.||||+||++|+||||+||+|||||||||||
T Consensus 84 gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM 163 (320)
T cd04824 84 GSAADDEDGPVIQAIKLIREEFPELLIACDVCLCEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM 163 (320)
T ss_pred cccccCCCChHHHHHHHHHHhCCCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc
Confidence 99999999999999999999999999999999999999999999987899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 269 MDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 269 MDGrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
|||||++||++||++|| ++|+|||||+||||+||||||||++|+|+|||||||||| |+|++|||||+++|++|||
T Consensus 164 MDGrV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmd----p~n~~eAlre~~~D~~EGA 239 (320)
T cd04824 164 MDGRVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLP----PGARGLALRAVERDVSEGA 239 (320)
T ss_pred cccHHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCC----CcCHHHHHHHHHhhHHhCC
Confidence 99999999999999999 999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHH
Q 014017 348 DILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARC 426 (432)
Q Consensus 348 D~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~w 426 (432)
||||||||++|||||+++|++| ++||+||||||||+|||+|+++||+|++++++|+|++|||||||+||||||+|+|+|
T Consensus 240 D~lMVKPal~YLDIi~~~k~~~~~~PvaaYqVSGEYaMikaAa~~G~iDe~~~~~Esl~~ikRAGAd~IiTYfA~~~a~w 319 (320)
T cd04824 240 DMIMVKPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAFDLKRAVLEAMTGFRRAGADIIITYFTPELLDW 319 (320)
T ss_pred CEEEEcCCchHHHHHHHHHHhccCCCEEEEEccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhcCCCEEEeecHHHHHhh
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred H
Q 014017 427 L 427 (432)
Q Consensus 427 L 427 (432)
|
T Consensus 320 L 320 (320)
T cd04824 320 L 320 (320)
T ss_pred C
Confidence 7
No 8
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.7e-139 Score=1007.36 Aligned_cols=336 Identities=65% Similarity=0.987 Sum_probs=323.2
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCCC-cccCCCCCceeechhhhHHHHHHH
Q 014017 87 KPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAK 165 (432)
Q Consensus 87 ~~~~p~g~p~~~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~~-~~I~sMPGv~r~si~~~l~~~v~~ 165 (432)
+|+.|- ...|+++.+|++|.|.||.+|.|++||.|+++||||||||+|++++ +||.||||+|||+|++ |+++++.
T Consensus 2 ~~a~~l---~~~P~~~s~~l~~g~~~p~lR~~q~~~~is~~nliyPlFI~e~~dd~~pI~SmPg~~r~G~~r-L~e~l~p 77 (340)
T KOG2794|consen 2 KPATPL---IDQPLQLSRRLHRGYKHPLLRAWQQETNISPANLIYPLFIHEGEDDFTPIDSMPGIYRLGVNR-LKEELAP 77 (340)
T ss_pred CCCcch---hcCcccHHHHhhcCCCCHHHHHHhccCCCChhheeeeEEEecCcccccccccCCchhHHHHHH-HHHHHHH
Confidence 445555 6789999999999999999999999999999999999999999965 9999999999999985 9999999
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHH
Q 014017 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETV 245 (432)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl 245 (432)
++++|++||+|||++++..||++||+|+|+||+|.+||++||+.||||+|+|||||||||||||||++.|||.|+||+|+
T Consensus 78 lv~~Gl~sViLfgvv~~~~Kd~~gs~Ads~~gpvi~ai~~lr~~fPdL~i~cDVclc~YsshGHcGll~EdG~i~~~esv 157 (340)
T KOG2794|consen 78 LVAKGLRSVILFGVVPEALKDPTGSEADSDNGPVIRAIRLLRDRFPDLVIACDVCLCEYSSHGHCGLLGEDGVINNDESV 157 (340)
T ss_pred HHHhccceEEEecCCCccccCcccccccCCCCcHHHHHHHHHHhCcceEEEeeeeeccccCCCccceecccccccCHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccc
Q 014017 246 HQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRV 325 (432)
Q Consensus 246 ~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~ 325 (432)
++|+++||+||+||||||||||||||||+|||++|+++||++|+||||||||+|+||||||||++|+|+|||||+|||+
T Consensus 158 ~rlaevAv~yAkAGa~vVapSDmmDgRV~aIk~aL~~~~l~~vsvmSYsaKfas~fyGpFR~aa~saP~fgDrkcYQlP- 236 (340)
T KOG2794|consen 158 HRLAEVAVSYAKAGADVVAPSDMMDGRVGAIKQALDAEGLQKVSVMSYSAKFASSFYGPFREAACSAPKFGDRKCYQLP- 236 (340)
T ss_pred HHHHHHHHHHHhcCCceecchHhhcchHHHHHHHHHHhcccceEEEeehhhhhhccccchHHHhhcCcccCCcceeeCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cCCCCCHH-HHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHH
Q 014017 326 IELYANYR-EALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 403 (432)
Q Consensus 326 ~~~p~N~~-EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~Es 403 (432)
+|+| .|+|..++|+.||||||||||++|||||||.+|++++ +|+++|||||||+|||+|+++|++|+|++||||
T Consensus 237 ----~~~R~la~rA~erD~aEGAD~lmVKPg~pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~~Dlk~~vmEs 312 (340)
T KOG2794|consen 237 ----ANSRGLALRARERDVAEGADILMVKPGLPYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGMFDLKKVVMES 312 (340)
T ss_pred ----CchHHHHHHHHHhhhhccCceEEecCCCcHHHHHHHHHhcCCCCceEEEEecchHHHHHHHHhcccccHHHHHHHH
Confidence 5555 5666667799999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHcCccEeehhcHHHHHHHHhccC
Q 014017 404 LMCLRRAGADIILTYFALQAARCLCGEK 431 (432)
Q Consensus 404 L~~ikRAGAd~IiTYfA~~~a~wL~~~~ 431 (432)
|++|+|||||+||||||+|+++||++++
T Consensus 313 m~~frRAGAdiIlTYfapq~l~~L~~e~ 340 (340)
T KOG2794|consen 313 MLGFRRAGADIILTYFAPQLLTWLCGEN 340 (340)
T ss_pred HHHHHhcCCcEEEeeccHHHHHHhhcCC
Confidence 9999999999999999999999999875
No 9
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.88 E-value=0.03 Score=51.47 Aligned_cols=164 Identities=19% Similarity=0.248 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecc-cCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL-DPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcL-c~YTshGHcGIl~~~ 236 (432)
+.++.++.+ +-|++.+-+ | +.-..+.| .+.|+.||+.+|+..+++|+-+ ++-+
T Consensus 13 ~a~~~~~~l-~~~v~~iev-~-----------~~l~~~~g--~~~i~~l~~~~~~~~i~~d~k~~d~~~----------- 66 (206)
T TIGR03128 13 EALELAEKV-ADYVDIIEI-G-----------TPLIKNEG--IEAVKEMKEAFPDRKVLADLKTMDAGE----------- 66 (206)
T ss_pred HHHHHHHHc-ccCeeEEEe-C-----------CHHHHHhC--HHHHHHHHHHCCCCEEEEEEeeccchH-----------
Confidence 467777777 778765544 2 11233445 4799999999999889988844 2221
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCC
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG-rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~ 315 (432)
.++-..+++|||+|.-.-...+ .+..+-+...+.|. .++. .+
T Consensus 67 -------------~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~---~~~~-------~~-------------- 109 (206)
T TIGR03128 67 -------------YEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGK---EVQV-------DL-------------- 109 (206)
T ss_pred -------------HHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCC---EEEE-------Ee--------------
Confidence 1445578999999964443333 45666666666774 2222 00
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-------chhHHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-------~YLDII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
++ |....|.++++ .+.|+|+|.+-|+. .+++-|+++++.++.+ -..|.|
T Consensus 110 -------~~----~~t~~~~~~~~---~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~--~i~v~G-------- 165 (206)
T TIGR03128 110 -------IN----VKDKVKRAKEL---KELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEA--RVAVAG-------- 165 (206)
T ss_pred -------cC----CCChHHHHHHH---HHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCC--cEEEEC--------
Confidence 12 32223333333 34499999998863 4788899998877643 244433
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
-++. |.+..+..+|||.++.
T Consensus 166 ----GI~~-----~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 166 ----GINL-----DTIPDVIKLGPDIVIV 185 (206)
T ss_pred ----CcCH-----HHHHHHHHcCCCEEEE
Confidence 3443 3445667899997764
No 10
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.73 E-value=0.0033 Score=64.54 Aligned_cols=148 Identities=25% Similarity=0.306 Sum_probs=99.6
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCC
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sa 312 (432)
++.++.+| .+.+++++-.++++|+|.|- |.+++.+-.-|++.-+..- .++|++.+
T Consensus 137 ~kp~~gld----~~~la~~~~~l~~gGvD~Ik----------------dde~~ge~~~~~~eER~~~-----v~~av~~a 191 (367)
T cd08205 137 IKPSIGLS----PEELAELAYELALGGIDLIK----------------DDELLADQPYAPFEERVRA-----CMEAVRRA 191 (367)
T ss_pred eCCCCCCC----HHHHHHHHHHHHhcCCCeee----------------ccccccCcccCCHHHHHHH-----HHHHHHHH
Confidence 34444444 56788888999999999986 3344455566666555443 34455444
Q ss_pred CC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEE-echhhHHHHHHHH
Q 014017 313 PR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ-VSGEYSMIKAGGA 390 (432)
Q Consensus 313 p~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYq-VSGEYaMikaAa~ 390 (432)
.+ -|.++-|-.+ +-+..+|+++.+..-.+.|||.+||-|-..+++.++.+++..++||.++- -+|-|.-.+ +
T Consensus 192 ~~~TG~~~~y~~n---it~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~~~lpi~~H~a~~ga~~~~~---~ 265 (367)
T cd08205 192 NEETGRKTLYAPN---ITGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAEDPDLPIMAHPAFAGALSRSP---D 265 (367)
T ss_pred HHhhCCcceEEEE---cCCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhcCCCeEEEccCcccccccCC---C
Confidence 32 2678888888 22556899999999999999999999999999999999998899998853 334433111 1
Q ss_pred CCCchhhHHHHHHHHHHHH-cCccEeeh
Q 014017 391 LKMIDEQRVMMESLMCLRR-AGADIILT 417 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikR-AGAd~IiT 417 (432)
.|+ +. .+ |.-+-| +|||+++.
T Consensus 266 ~g~-~~--~~---~~kl~RlaGad~~~~ 287 (367)
T cd08205 266 YGS-HF--LL---LGKLMRLAGADAVIF 287 (367)
T ss_pred CcC-CH--HH---HHHHHHHcCCCcccc
Confidence 111 11 22 333444 89999853
No 11
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.73 E-value=0.089 Score=54.49 Aligned_cols=164 Identities=25% Similarity=0.319 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.++.++++.+.|+..+-+ |. | ..... ..++|+.|++.+++..|+.|+-+.-. |
T Consensus 17 ~~~~~~~~~~~~Gv~~ie~-g~-p----------~~~~~--~~~~i~~l~~~~~~~~ii~D~kl~d~------------g 70 (430)
T PRK07028 17 RAVEIAKEAVAGGADWIEA-GT-P----------LIKSE--GMNAIRTLRKNFPDHTIVADMKTMDT------------G 70 (430)
T ss_pred HHHHHHHHHHhcCCcEEEe-CC-H----------HHHHh--hHHHHHHHHHHCCCCEEEEEeeeccc------------h
Confidence 5788889999999988742 21 1 11111 26899999999998888888765311 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
.+ ..-..+++|||.|. |...-+..+..+++...+.|. .+.+- +
T Consensus 71 ~~-----------~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~-~~~~g-----------------~------- 114 (430)
T PRK07028 71 AI-----------EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGV-RLMAD-----------------L------- 114 (430)
T ss_pred HH-----------HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCC-EEEEE-----------------e-------
Confidence 11 22235789999777 543223356666666666775 23220 0
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC-------CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG-------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa-------l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa 389 (432)
+. |.+.-|.++++. +.|+|.|.+-|+ ...++.++++++.+++||.+ .|
T Consensus 115 ------~s----~~t~~e~~~~a~---~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a---~G--------- 169 (430)
T PRK07028 115 ------IN----VPDPVKRAVELE---ELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAV---AG--------- 169 (430)
T ss_pred ------cC----CCCHHHHHHHHH---hcCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEE---EC---------
Confidence 11 222233344443 469999988886 23478999999988999976 23
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
| ++. |.+..+..+|||.|+
T Consensus 170 --G-I~~-----~n~~~~l~aGAdgv~ 188 (430)
T PRK07028 170 --G-LDA-----ETAAKAVAAGADIVI 188 (430)
T ss_pred --C-CCH-----HHHHHHHHcCCCEEE
Confidence 3 343 445667788998766
No 12
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.31 E-value=0.017 Score=59.57 Aligned_cols=136 Identities=26% Similarity=0.404 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCC--------CCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCC
Q 014017 242 DETVHQLCKQAVSQARAGADVVSPSD--------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVAPSD--------MMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap 313 (432)
=-+.+.+++++-.++.+|+|.|-... -++=||.+..++++++. +.
T Consensus 137 GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~-------------------------~e-- 189 (364)
T cd08210 137 GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEAN-------------------------AE-- 189 (364)
T ss_pred cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHH-------------------------hh--
Confidence 44677889999999999999994322 23345555555554432 11
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC-CCeEEE-EechhhHHHHHHHHC
Q 014017 314 RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAY-QVSGEYSMIKAGGAL 391 (432)
Q Consensus 314 ~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~-lPvaaY-qVSGEYaMikaAa~~ 391 (432)
-|.|+-|-.++. +-..|+++.++.=.+.|||.|||=|-..++|.++.+++... +||.++ ..+|-|.- ...
T Consensus 190 -TG~~~~y~~Nit---a~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~----~~~ 261 (364)
T cd08210 190 -TGGRTLYAPNVT---GPPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHPAFAGAFVS----SGD 261 (364)
T ss_pred -cCCcceEEEecC---CCHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEcccccccccc----CCC
Confidence 277888888833 34568888888888899999999999999999999999988 999877 23333320 111
Q ss_pred CCchhhHHHHHHHHHHHHcCccEee
Q 014017 392 KMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 392 G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+ ++. ..++..| .+-+|||+++
T Consensus 262 ~-is~-~~~~~kl--~RlaGad~~~ 282 (364)
T cd08210 262 G-ISH-ALLFGTL--FRLAGADAVI 282 (364)
T ss_pred c-ccH-HHHHHHH--HHHhCCCEEE
Confidence 2 222 1233332 2338999985
No 13
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.17 E-value=0.052 Score=52.61 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCeecCCCCC----------------C---chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhh
Q 014017 250 KQAVSQARAGADVVSPSDMM----------------D---GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD 310 (432)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM----------------D---GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~ 310 (432)
+.+-.+.++|++.|-..|-. + .+|.++|++.+.. .++.|++-+--|...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~--~~~~IiARTDa~~~~---------- 155 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL--PDFVIIARTDALLAG---------- 155 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc--CCeEEEEEcCchhcc----------
Confidence 33445667999999885543 1 3444555555443 578888764333222
Q ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHH
Q 014017 311 SNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 311 Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~ 390 (432)
....+||++.+..=.+-|||+|+|-+ ..-.|-++++.+..++|+..|++.|-.
T Consensus 156 ------------------~~~~~eai~Ra~ay~~AGAD~v~v~~-~~~~~~~~~~~~~~~~Pl~~~~~~~~~-------- 208 (243)
T cd00377 156 ------------------EEGLDEAIERAKAYAEAGADGIFVEG-LKDPEEIRAFAEAPDVPLNVNMTPGGN-------- 208 (243)
T ss_pred ------------------CCCHHHHHHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHhcCCCCEEEEecCCCC--------
Confidence 12457999999999999999999954 446788889999999999999886542
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++ ++..+.+.|.+.|+.
T Consensus 209 --~~--------~~~~l~~lG~~~v~~ 225 (243)
T cd00377 209 --LL--------TVAELAELGVRRVSY 225 (243)
T ss_pred --CC--------CHHHHHHCCCeEEEE
Confidence 22 334567779888764
No 14
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.12 E-value=0.51 Score=45.46 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.++.++.+.+.||+.+-+ +- +-++ -.++|+.++++||++.|-+|.-
T Consensus 28 ~a~~i~~al~~~Gi~~iEi-tl--------------~~~~-~~~~I~~l~~~~p~~~IGAGTV----------------- 74 (212)
T PRK05718 28 DAVPLAKALVAGGLPVLEV-TL--------------RTPA-ALEAIRLIAKEVPEALIGAGTV----------------- 74 (212)
T ss_pred HHHHHHHHHHHcCCCEEEE-ec--------------CCcc-HHHHHHHHHHHCCCCEEEEeec-----------------
Confidence 5899999999999998766 21 1111 3479999999999988876543
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
.++ +++-...+||||++--..+-+.-+.. +.+
T Consensus 75 --l~~-------~~a~~a~~aGA~FivsP~~~~~vi~~---a~~------------------------------------ 106 (212)
T PRK05718 75 --LNP-------EQLAQAIEAGAQFIVSPGLTPPLLKA---AQE------------------------------------ 106 (212)
T ss_pred --cCH-------HHHHHHHHcCCCEEECCCCCHHHHHH---HHH------------------------------------
Confidence 344 34555678999988766666644443 332
Q ss_pred cccccccccCCCC--CHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCC
Q 014017 318 KKTYVIRVIELYA--NYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 318 RktYQmd~~~~p~--N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G 392 (432)
|+++ .+|+ +..| +.++ .+-|||+|=+-|+... .+.|+.++.-|+ +|+. + .|
T Consensus 107 ---~~i~--~iPG~~TptE-i~~a---~~~Ga~~vKlFPa~~~gg~~~lk~l~~p~p~~~~~---p------------tG 162 (212)
T PRK05718 107 ---GPIP--LIPGVSTPSE-LMLG---MELGLRTFKFFPAEASGGVKMLKALAGPFPDVRFC---P------------TG 162 (212)
T ss_pred ---cCCC--EeCCCCCHHH-HHHH---HHCCCCEEEEccchhccCHHHHHHHhccCCCCeEE---E------------eC
Confidence 4444 2333 3367 3333 4689999999999865 789999998774 6665 3 34
Q ss_pred CchhhHHHHHHHHHHHHcCccEee
Q 014017 393 MIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 393 ~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
-++. |.+..+..+|+..+.
T Consensus 163 GV~~-----~ni~~~l~ag~v~~v 181 (212)
T PRK05718 163 GISP-----ANYRDYLALPNVLCI 181 (212)
T ss_pred CCCH-----HHHHHHHhCCCEEEE
Confidence 5665 566677778854443
No 15
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.69 E-value=0.13 Score=50.28 Aligned_cols=209 Identities=17% Similarity=0.186 Sum_probs=128.8
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecc
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVAL 221 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcL 221 (432)
|||+|=... .+-+-+.|+..+.+=+-.. ..+..+.+-+.+ ...++.|.+..|.+-|++|.=.
T Consensus 16 ~~~ayD~~s-------A~i~e~aG~dai~v~~s~~------a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~ 82 (240)
T cd06556 16 TLTAYDYSM-------AKQFADAGLNVMLVGDSQG------MTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPF 82 (240)
T ss_pred EecCCCHHH-------HHHHHHcCCCEEEEChHHH------HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 788854432 2223345999888722100 011123332333 4667778888888889988522
Q ss_pred cCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--CCchHHHHHHHHHHCCCccceeecchhhhcc
Q 014017 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--MDGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (432)
Q Consensus 222 c~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyAS 299 (432)
|.=.+ .+...+.+-.+.++||+.|--.|- |-.+|.++|+ +| +.||...-=+.+
T Consensus 83 ---------------G~g~~---~~~~~~~~~~l~~aGa~gv~iED~~~~~~~i~ai~~----a~---i~ViaRtd~~pq 137 (240)
T cd06556 83 ---------------GAYGA---PTAAFELAKTFMRAGAAGVKIEGGEWHIETLQMLTA----AA---VPVIAHTGLTPQ 137 (240)
T ss_pred ---------------CCCcC---HHHHHHHHHHHHHcCCcEEEEcCcHHHHHHHHHHHH----cC---CeEEEEeCCchh
Confidence 22221 133455666777899999988885 2234444443 34 688887543322
Q ss_pred ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEec
Q 014017 300 SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 300 sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVS 379 (432)
++- + .-|+| -|... ..-.+|+|+.+..=.+-|||+|.+- +. =.+.++++.+..++|+.. .-+
T Consensus 138 ~~~--------~--~gg~~-~~~~~----~~~~~~ai~Ra~ay~~AGAd~i~~e-~~-~~e~~~~i~~~~~~P~~~-~ga 199 (240)
T cd06556 138 SVN--------T--SGGDE-GQYRG----DEAGEQLIADALAYAPAGADLIVME-CV-PVELAKQITEALAIPLAG-IGA 199 (240)
T ss_pred hhh--------c--cCCce-eeccC----HHHHHHHHHHHHHHHHcCCCEEEEc-CC-CHHHHHHHHHhCCCCEEE-Eec
Confidence 110 0 00233 33334 4446799999998889999999995 66 799999999999999876 455
Q ss_pred hhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHH
Q 014017 380 GEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARC 426 (432)
Q Consensus 380 GEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~w 426 (432)
|. ++|.+-.+++-++++. .+. ...|+++.+++
T Consensus 200 g~-----------~~dgq~lv~~d~lg~~---~~~-~p~f~~~~~~~ 231 (240)
T cd06556 200 GS-----------GTDGQFLVLADAFGIT---GGH-IPKFAKNFHAE 231 (240)
T ss_pred Cc-----------CCCceEEeHHhhhccc---CCC-CCchHHHHhhh
Confidence 54 5677777777777773 222 67777777664
No 16
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.18 E-value=0.63 Score=41.19 Aligned_cols=51 Identities=18% Similarity=0.132 Sum_probs=38.1
Q ss_pred HHHHHHHHHhchhcCCcEEEEcCCCch---------hHHHHHHHhh--CCCCeEEEEechhh
Q 014017 332 YREALVEAQADESEGADILLVKPGLPY---------LDVIRLLRDK--YPLPIAAYQVSGEY 382 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~lMVKPal~Y---------LDII~~vk~~--~~lPvaaYqVSGEY 382 (432)
.++++.+++.=.+-|||.+++=|-..| ++.++++.+. .++|+..|+.-+-.
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 356666665556669999999876433 5888889888 48999999986543
No 17
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.00 E-value=1.3 Score=40.98 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
.++.+.++.+.+.|++.|-+ - .|++. ....|+.+++.+|++.|.+
T Consensus 16 ~~~~~~~~~l~~~G~~~vev-~-----~~~~~----------~~~~i~~l~~~~~~~~iGa------------------- 60 (190)
T cd00452 16 EDALALAEALIEGGIRAIEI-T-----LRTPG----------ALEAIRALRKEFPEALIGA------------------- 60 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEE-e-----CCChh----------HHHHHHHHHHHCCCCEEEE-------------------
Confidence 35889999999999998776 1 22221 4459999999999866653
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
|.|.+.+.++. ..++|||.|.-.. .|- +.-++.
T Consensus 61 g~v~~~~~~~~-------a~~~Ga~~i~~p~-~~~--------------------------------~~~~~~------- 93 (190)
T cd00452 61 GTVLTPEQADA-------AIAAGAQFIVSPG-LDP--------------------------------EVVKAA------- 93 (190)
T ss_pred EeCCCHHHHHH-------HHHcCCCEEEcCC-CCH--------------------------------HHHHHH-------
Confidence 22232223332 3468999764211 111 111111
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
+.|.++++.=..|..|+.+.. +.|||+|.+=|+.+. .+.++.++..+ ++|+.| -|-+
T Consensus 94 --~~~~~~~i~gv~t~~e~~~A~----~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a---------------~GGI 152 (190)
T cd00452 94 --NRAGIPLLPGVATPTEIMQAL----ELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMP---------------TGGV 152 (190)
T ss_pred --HHcCCcEECCcCCHHHHHHHH----HCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEE---------------eCCC
Confidence 111222211155777865553 589999999775543 67788888877 488876 4556
Q ss_pred hhhHHHHHHHHHHHHcCccEeehhcH
Q 014017 395 DEQRVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
+. |.+..+..+|||.|..-.+
T Consensus 153 ~~-----~n~~~~~~~G~~~v~v~s~ 173 (190)
T cd00452 153 SL-----DNAAEWLAAGVVAVGGGSL 173 (190)
T ss_pred CH-----HHHHHHHHCCCEEEEEchh
Confidence 64 5667788899999765433
No 18
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=94.87 E-value=1.4 Score=40.24 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+.+. ++.+-+ |. |- ...+| .+.|+.+|+.+|++.|+.|.-+..+
T Consensus 14 ~~~~~~~~l~~~-i~~iei-g~-~~----------~~~~g--~~~i~~i~~~~~~~~i~~~~~v~~~------------- 65 (202)
T cd04726 14 EALELAKKVPDG-VDIIEA-GT-PL----------IKSEG--MEAVRALREAFPDKIIVADLKTADA------------- 65 (202)
T ss_pred HHHHHHHHhhhc-CCEEEc-CC-HH----------HHHhC--HHHHHHHHHHCCCCEEEEEEEeccc-------------
Confidence 577777777777 887666 42 21 12334 5789999999999888776554311
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM-DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
.| .++-..+++|||+|.--+.. ......+-+...++|. .+.+ .
T Consensus 66 --~~--------~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~-~~~v---------~---------------- 109 (202)
T cd04726 66 --GA--------LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGK-EVQV---------D---------------- 109 (202)
T ss_pred --cH--------HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCC-eEEE---------E----------------
Confidence 11 23456789999998843322 1223333334444442 1110 0
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC--------CchhHHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG--------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa--------l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
-+. |.+..|+++ + .+.|+|++.+-|+ ..+.+-|+.+++..++|+.+ .|
T Consensus 110 -----~~~----~~t~~e~~~-~---~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~---~G-------- 165 (202)
T cd04726 110 -----LIG----VEDPEKRAK-L---LKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAV---AG-------- 165 (202)
T ss_pred -----EeC----CCCHHHHHH-H---HHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEE---EC--------
Confidence 022 556677664 2 3359999988663 45688888888766778743 33
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
-++. |.+..+..+|||.++.
T Consensus 166 ----GI~~-----~~i~~~~~~Gad~vvv 185 (202)
T cd04726 166 ----GITP-----DTLPEFKKAGADIVIV 185 (202)
T ss_pred ----CcCH-----HHHHHHHhcCCCEEEE
Confidence 3453 4566788999998763
No 19
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=94.78 E-value=1.6 Score=47.91 Aligned_cols=216 Identities=18% Similarity=0.213 Sum_probs=134.6
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcceee
Q 014017 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIV 233 (432)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTshGHcGIl 233 (432)
++++++.+ -++.|-.-+.- |+.-+...+ ..|-+ ..-..+..+|+++.++.. .+..|..+ +-||...|
T Consensus 43 e~i~~vH~~yl~AGAdvi~TnTy~as~~~l~-~~g~~-~~~~~l~~~av~lAr~a~~~~~~Vags--iGP~g~~~----- 113 (612)
T PRK08645 43 ELILRIHREYIEAGADVIQTNTFGANRIKLK-RYGLE-DKVKEINRAAVRLAREAAGDDVYVAGT--IGPIGGRG----- 113 (612)
T ss_pred HHHHHHHHHHHHhCCCEEecCcccccHHHHH-hcCch-HHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCCCCCC-----
Confidence 46666664 57899774333 654222221 11211 123455678888888776 34666666 45665532
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccce-eecchhhhccccchhhhhhhhC
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVS-IMSYTAKYASSFYGPFREALDS 311 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~-ImSYSaKyASsfYGPFRdAa~S 311 (432)
..|.++.++-.+....|+-.++++|+|+++=--|.+ -.+.++.+++.+.+ +++ ++|++.+
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~l~~~gvD~l~~ET~~~~~Ea~a~~~a~~~~~--~~p~~~Sf~~~--------------- 175 (612)
T PRK08645 114 -PLGDISLEEIRREFREQIDALLEEGVDGLLLETFYDLEELLLALEAAREKT--DLPIIAQVAFH--------------- 175 (612)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHHHHhC--CCcEEEEEEEC---------------
Confidence 234566788888899999999999999999888887 45667777776654 122 3344321
Q ss_pred CCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-c--hhHHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 312 NPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-P--YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 312 ap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-~--YLDII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
......+ =....+++..+. +.|+|.|++==.. + -+.+|+.++...++|+++|=-+|+-.- ..
T Consensus 176 ------~~g~l~~----G~~~~~~~~~~~---~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG~~~~--~~ 240 (612)
T PRK08645 176 ------EDGVTQN----GTSLEEALKELV---AAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAGLPEY--VD 240 (612)
T ss_pred ------CCCeeCC----CCCHHHHHHHHH---hCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCCCCCC--CC
Confidence 1123344 444567766664 3579999986553 2 355666666666899999999999321 11
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
...-|-.....+-|....+..+||.+|
T Consensus 241 ~~~~~~~~p~~~~~~~~~~~~~Ga~ii 267 (612)
T PRK08645 241 GRYVYSANPEYFAEYALEFVEQGVRLI 267 (612)
T ss_pred CccccCCCHHHHHHHHHHHHHhCCCEE
Confidence 111122233567888889999999987
No 20
>PLN02489 homocysteine S-methyltransferase
Probab=94.69 E-value=1.9 Score=43.97 Aligned_cols=224 Identities=17% Similarity=0.224 Sum_probs=135.4
Q ss_pred hHHHHHHH-HHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---------------------CC
Q 014017 158 GLVQEVAK-ARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---------------------PD 212 (432)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L---Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f---------------------Pd 212 (432)
++++.+.+ -++.|-. |+. |+.-+...++ .|-+...-+.+..+|+++.|+.. .+
T Consensus 55 e~V~~vH~~yl~AGAd-vI~TnTy~a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~~~~~~~~~~~ 132 (335)
T PLN02489 55 HLIRKVHLDYLEAGAD-IIITASYQATIQGFES-RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTSRPGRELSYRP 132 (335)
T ss_pred HHHHHHHHHHHHhCCC-EEEecccccCHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccCCCC
Confidence 46666664 5789987 444 5531111111 11000001336677888777553 25
Q ss_pred eEEEeeecccCCCCCCcceeecC---CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccc
Q 014017 213 LVIYTDVALDPYSSDGHDGIVRE---DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHV 288 (432)
Q Consensus 213 l~IitDVcLc~YTshGHcGIl~~---~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v 288 (432)
..|..++ -||-..=+.|--.. +..+.-++-.+....|+-.++++|+|+|+=--|.+ -.+.++.+++.+.+..--
T Consensus 133 ~~VaGsi--GP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p 210 (335)
T PLN02489 133 ILVAASI--GSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIP 210 (335)
T ss_pred cEEEEEc--CCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCe
Confidence 7777774 45554333332110 01256677777788888889999999999988888 456788888887754333
Q ss_pred eeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc--hhHHHHHHH
Q 014017 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP--YLDVIRLLR 366 (432)
Q Consensus 289 ~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~--YLDII~~vk 366 (432)
.++|++.+ + + ..-++ -.+..+++..+.. ..++|.|.+==..+ .+.+|+.++
T Consensus 211 ~~iS~t~~----------~---------~--~~l~~----G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~~~~~l~~l~ 263 (335)
T PLN02489 211 AWISFNSK----------D---------G--VNVVS----GDSLLECASIADS--CKKVVAVGINCTPPRFIHGLILSIR 263 (335)
T ss_pred EEEEEEeC----------C---------C--CccCC----CCcHHHHHHHHHh--cCCceEEEecCCCHHHHHHHHHHHH
Confidence 44555432 0 1 11233 3345666665532 24678887754433 477888888
Q ss_pred hhCCCCeEEEEechhhHHHHHHHHCCCchh----hHHHHHHHHHHHHcCccEe
Q 014017 367 DKYPLPIAAYQVSGEYSMIKAGGALKMIDE----QRVMMESLMCLRRAGADII 415 (432)
Q Consensus 367 ~~~~lPvaaYqVSGEYaMikaAa~~G~id~----~~~~~EsL~~ikRAGAd~I 415 (432)
...+.|+.+|=-+|+. ......+|... ...+.|....++.+||.+|
T Consensus 264 ~~~~~pl~vyPNaG~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~iI 313 (335)
T PLN02489 264 KVTSKPIVVYPNSGET---YDGEAKEWVESTGVSDEDFVSYVNKWRDAGASLI 313 (335)
T ss_pred hhcCCcEEEECCCCCC---CCCccCcccCCCCCCHHHHHHHHHHHHHCCCcEE
Confidence 8888999999999984 22234566411 2357788888999999876
No 21
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.49 E-value=2.6 Score=37.24 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=88.5
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcce
Q 014017 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 154 si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd--l~IitDVcLc~YTshGHcG 231 (432)
+.+ .+.+.++.+.+.|+..+.+.| +.++.+++..++ +-|++= +...|
T Consensus 11 d~~-~~~~~~~~~~~~gv~gi~~~g----------------------~~i~~~~~~~~~~~~~v~~~--v~~~~------ 59 (201)
T cd00945 11 TLE-DIAKLCDEAIEYGFAAVCVNP----------------------GYVRLAADALAGSDVPVIVV--VGFPT------ 59 (201)
T ss_pred CHH-HHHHHHHHHHHhCCcEEEECH----------------------HHHHHHHHHhCCCCCeEEEE--ecCCC------
Confidence 443 588889999999999998877 567777777664 555532 11111
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC-----CCchHHHHHHHHHHCCCccceeecchhhhccccch
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM-----MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA---PSDM-----MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG 303 (432)
+. .+.+...+.+-...++|||.|. |-.- .++-+..+|+..+..+ .+.++|-|--
T Consensus 60 -----~~----~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pv~iy~~-------- 121 (201)
T cd00945 60 -----GL----TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAAD-GGLPLKVILE-------- 121 (201)
T ss_pred -----CC----CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhc-CCceEEEEEE--------
Confidence 11 3345555566666788999875 2211 2455666666666531 2467777643
Q ss_pred hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC----chhHHHHHHHhhC--CCCeEEE
Q 014017 304 PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL----PYLDVIRLLRDKY--PLPIAAY 376 (432)
Q Consensus 304 PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal----~YLDII~~vk~~~--~lPvaaY 376 (432)
|.+ + ++ +....++.+.+ .+.|+|+|=+.++. ..++-++.+++.+ ++|+.++
T Consensus 122 p~~-------------~--~~----~~~~~~~~~~~---~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 178 (201)
T cd00945 122 TRG-------------L--KT----ADEIAKAARIA---AEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAA 178 (201)
T ss_pred CCC-------------C--CC----HHHHHHHHHHH---HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEE
Confidence 111 0 33 32333433333 24788876555542 2677888888877 4566543
No 22
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=94.35 E-value=2.6 Score=42.86 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
++..+-+-+.|--+||..-.+|.+.+-..|-.--| + ++-|+.||+.. ++=|| |+++. |+
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~--~--~~~I~~Ik~~V-~iPVI--------------Gi~K~-~~- 76 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMA--D--PKMIKEIMDAV-SIPVM--------------AKVRI-GH- 76 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecC--C--HHHHHHHHHhC-CCCeE--------------Eeeeh-hH-
Confidence 56677788999999999999997654444332222 2 45689999887 77777 44532 33
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
.+.|....++|+|+|.=|
T Consensus 77 ---------~~Ea~~L~eaGvDiIDaT 94 (283)
T cd04727 77 ---------FVEAQILEALGVDMIDES 94 (283)
T ss_pred ---------HHHHHHHHHcCCCEEecc
Confidence 677888899999999533
No 23
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=93.68 E-value=2.2 Score=41.68 Aligned_cols=69 Identities=22% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch--hhHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID--EQRVMMESLM 405 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id--~~~~~~EsL~ 405 (432)
+.+..++.+.+. +-|||+| |...+ -++.++++.+..++||.+ .|-++ ..+-++|-+.
T Consensus 159 ~~~i~~a~~~a~---e~GAD~v--Kt~~~~~~~~l~~~~~~~~ipV~a---------------~GGi~~~~~~~~l~~v~ 218 (267)
T PRK07226 159 PEVVAHAARVAA---ELGADIV--KTNYTGDPESFREVVEGCPVPVVI---------------AGGPKTDTDREFLEMVR 218 (267)
T ss_pred HHHHHHHHHHHH---HHCCCEE--eeCCCCCHHHHHHHHHhCCCCEEE---------------EeCCCCCCHHHHHHHHH
Confidence 444555555554 5799999 55521 167888888877899865 34455 2245677777
Q ss_pred HHHHcCccEeeh
Q 014017 406 CLRRAGADIILT 417 (432)
Q Consensus 406 ~ikRAGAd~IiT 417 (432)
...+|||+.|..
T Consensus 219 ~~~~aGA~Gis~ 230 (267)
T PRK07226 219 DAMEAGAAGVAV 230 (267)
T ss_pred HHHHcCCcEEeh
Confidence 778899987654
No 24
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.60 E-value=0.5 Score=50.57 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccCC----CCCCccee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDPY----SSDGHDGI 232 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit-DVcLc~Y----TshGHcGI 232 (432)
+..+.++.+++.|+..|.|=- . ..++-.+...|+.||++||++.||+ ||+--+= -.-|.|+|
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~----a---------~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v 293 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDT----A---------HGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEec----c---------CCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEE
Confidence 467889999999999977622 1 1224557789999999999999998 7763211 13466665
Q ss_pred ecC--CC-----ccccHH---HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccc
Q 014017 233 VRE--DG-----VIMNDE---TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288 (432)
Q Consensus 233 l~~--~g-----~IdND~---Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v 288 (432)
--. .| .+-... .+..+.+.|-.-.+.|..+||=-.+... +-|.++|. .|-.-|
T Consensus 294 ~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~--~~~~~al~-~ga~~v 356 (479)
T PRK07807 294 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHP--RDVALALA-AGASNV 356 (479)
T ss_pred EECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCH--HHHHHHHH-cCCCee
Confidence 300 01 111112 2222333332223447777664444332 56777775 565433
No 25
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=93.35 E-value=2.9 Score=42.60 Aligned_cols=122 Identities=22% Similarity=0.308 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
.+..+-+-+.|--+||-.-.||.+.+-..|-.--+ + ++-|+.||+.. ++=||. +++. |+
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~--~--p~~I~~I~~~V-~iPVig--------------~~ki-gh- 78 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMS--D--PKMIKEIMDAV-SIPVMA--------------KVRI-GH- 78 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecC--C--HHHHHHHHHhC-CCCEEE--------------Eeec-cH-
Confidence 57777888999999999888997654443333222 1 46799999987 777773 3331 22
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcc
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRk 319 (432)
-+.|-.+.++|+|+|.=|+-.-- +-.||. -+|+
T Consensus 79 ---------~~Ea~~L~~~GvDiIDeTe~lrP--------------------------ade~~~------------~~K~ 111 (287)
T TIGR00343 79 ---------FVEAQILEALGVDYIDESEVLTP--------------------------ADWTFH------------IDKK 111 (287)
T ss_pred ---------HHHHHHHHHcCCCEEEccCCCCc--------------------------HHHHHH------------HHHH
Confidence 56677888999999954443221 011111 1222
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEc
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVK 353 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK 353 (432)
.|..+++.=-+|..||++. ++||||||--|
T Consensus 112 ~f~vpfmad~~~l~EAlra----i~~GadmI~Tt 141 (287)
T TIGR00343 112 KFKVPFVCGARDLGEALRR----INEGAAMIRTK 141 (287)
T ss_pred HcCCCEEccCCCHHHHHHH----HHCCCCEEecc
Confidence 2322222227888998887 46999999999
No 26
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=93.06 E-value=0.34 Score=47.74 Aligned_cols=227 Identities=19% Similarity=0.196 Sum_probs=127.9
Q ss_pred hhHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC------eEEEeeecccCCCCC
Q 014017 157 HGLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD------LVIYTDVALDPYSSD 227 (432)
Q Consensus 157 ~~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd------l~IitDVcLc~YTsh 227 (432)
++++.++.+ -++.|-.-+.- |+.-+...++ .|-+...-..+..+|+++.|+...+ ..|..++- ||-..
T Consensus 40 p~~v~~iH~~yl~AGAdiI~TnTy~a~~~~l~~-~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~VaGsiG--P~ga~ 116 (305)
T PF02574_consen 40 PELVRQIHRDYLEAGADIITTNTYQASRERLKE-YGLSDEEAEELNRAAVELAREAADEYGSGRKVLVAGSIG--PYGAY 116 (305)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEC-TT-SHHHHGG-GT-GGGCHHHHHHHHHHHHHHHHTT---TT-SEEEEEEE----S--
T ss_pred HHHHHHHHHHHHHCCCCeEEecCCcCchhhhhh-cCCcHHHHHHHHHHHHHHHHHHHhhccCCCccEEEEEcc--ccccc
Confidence 346666664 57889876555 6642222222 2211111145677888888877655 67777665 33211
Q ss_pred Ccce-eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHH-CCCccceeecchhhhccccchh
Q 014017 228 GHDG-IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDA-EGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 228 GHcG-Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~-~Gf~~v~ImSYSaKyASsfYGP 304 (432)
=+ | -+..++.+.-|+-.+...+|+-.++++|+|++.=--|.+ -.+.++.+++.+ .+ .-.++|.+.+=...
T Consensus 117 l~-g~~y~~~~~~~~~~~~~~~~~q~~~l~~~gvD~l~~ET~~~~~E~~aa~~a~~~~~~--~p~~is~~~~~~~~---- 189 (305)
T PF02574_consen 117 LS-GSEYPGDYGLSFEELRDFHREQAEALADAGVDLLLFETMPSLAEAKAALEAIKEVTG--LPVWISFSCKDSGR---- 189 (305)
T ss_dssp -------CTTCTT-HHHHHHHHHHHHHHHHHTT-SEEEEEEEC-CSCHHHHHHHHHHHHH--CCSSEEE-EEEEES----
T ss_pred ch-hhhccccccccHHHHHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHHhhhh--hhceeccchhhhcc----
Confidence 11 1 112334556677778888899999999999999887776 568888888888 22 22344665531111
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc--CCCchhHHHHHHHhhC-CCCeEEEEechh
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK--PGLPYLDVIRLLRDKY-PLPIAAYQVSGE 381 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK--Pal~YLDII~~vk~~~-~lPvaaYqVSGE 381 (432)
..|-.+.+ ..-+.+.+....+..|+|.+.|- ........|.++.... ++|+.+|=-||+
T Consensus 190 ----------l~~g~~~~--------~~~~~~~~~~~~~~~~~~~iGvNC~~~~~~~~~l~~~~~~~~~~~l~vyPNsG~ 251 (305)
T PF02574_consen 190 ----------LRDGTSLE--------DAVQVIDELLRALPPGPDAIGVNCTSPPEIMKALLELMSATHDIPLIVYPNSGE 251 (305)
T ss_dssp -----------TCTTBCT--------TSHHHHHHHHHHHCTT-SEEEEESSS-HHHHHHHHHHHHHHT-SEEEEE--SBS
T ss_pred ----------ccCCCCHH--------HHHHHHHHHHHHhhhhhheEEcCCCCcHHHHhHHHHHHhccCCceEEEecCCCC
Confidence 11211222 22344555544457899999997 4444566666666654 899999988998
Q ss_pred hHHHHHHHHCCCchhhHHH----HHHHHHHHHcCccEe
Q 014017 382 YSMIKAGGALKMIDEQRVM----MESLMCLRRAGADII 415 (432)
Q Consensus 382 YaMikaAa~~G~id~~~~~----~EsL~~ikRAGAd~I 415 (432)
-...- .+|......+ .+.+..+.++|+.+|
T Consensus 252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 285 (305)
T PF02574_consen 252 PYDVG----KVWSETPEDFAPEWAEFVKEWVEAGARII 285 (305)
T ss_dssp -TTSS----GGSTTTTTSHGGG-HHHHHHHHHHHHCEE
T ss_pred Ccccc----cccccchhhhHHHHHHHHHHHHHhCCEEE
Confidence 66554 5676533333 348888889998665
No 27
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.99 E-value=2 Score=40.34 Aligned_cols=163 Identities=21% Similarity=0.254 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.+.+..+.+.+.|++.+-+ + + ...++.+|+. .++-|+. .|--|- ++.
T Consensus 28 ~i~~~a~~~~~~G~~~~~~-~------------------~--~~~~~~i~~~-~~iPil~-----~~~~~~------~~~ 74 (219)
T cd04729 28 IMAAMALAAVQGGAVGIRA-N------------------G--VEDIRAIRAR-VDLPIIG-----LIKRDY------PDS 74 (219)
T ss_pred HHHHHHHHHHHCCCeEEEc-C------------------C--HHHHHHHHHh-CCCCEEE-----EEecCC------CCC
Confidence 3677788899999976431 1 1 1467777765 4554432 111110 011
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC----c-hHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD----G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD----G-rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sa 312 (432)
.+.-+++.+ +.-..+++|||+|.+..-.. + .+..+-+.+.+.| ++.++.
T Consensus 75 ~~~ig~~~~----~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g--~~~iiv-------------------- 128 (219)
T cd04729 75 EVYITPTIE----EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY--NCLLMA-------------------- 128 (219)
T ss_pred CceeCCCHH----HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh--CCeEEE--------------------
Confidence 111122333 44556789999998854332 1 6777777777777 555552
Q ss_pred CCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC----------CchhHHHHHHHhhCCCCeEEEEechhh
Q 014017 313 PRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG----------LPYLDVIRLLRDKYPLPIAAYQVSGEY 382 (432)
Q Consensus 313 p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa----------l~YLDII~~vk~~~~lPvaaYqVSGEY 382 (432)
+ +.+..|+.+. .+.|+|++.+.+. .+-++.++++++.+++|+.+ ++
T Consensus 129 -----------~----v~t~~ea~~a----~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia--~G--- 184 (219)
T cd04729 129 -----------D----ISTLEEALNA----AKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIA--EG--- 184 (219)
T ss_pred -----------E----CCCHHHHHHH----HHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEE--eC---
Confidence 2 3355665333 3469999987542 23468999999999999885 22
Q ss_pred HHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 383 SMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 383 aMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|.-+. |.+..+.++|||.++-
T Consensus 185 ---------GI~~~-----~~~~~~l~~GadgV~v 205 (219)
T cd04729 185 ---------RINSP-----EQAAKALELGADAVVV 205 (219)
T ss_pred ---------CCCCH-----HHHHHHHHCCCCEEEE
Confidence 22233 3334455579998874
No 28
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=92.96 E-value=2.8 Score=41.32 Aligned_cols=96 Identities=17% Similarity=0.312 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YT 225 (432)
+..+.++.+.+.|...|-|-+- -| +.-.|+.|..-.|.--++.+.++.+|+.+ +|+.|..++..+.+.
T Consensus 142 ~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~ 221 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC
Confidence 4666677888999999988542 11 34567777766566667788999999998 589999999887653
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
..| . |.+...+.+-.+.++|+|.|.-|.
T Consensus 222 ~~g----------~----~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 222 PGG----------L----TLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred CCC----------C----CHHHHHHHHHHHHHcCCCEEEeCC
Confidence 222 2 233444555566788999998654
No 29
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.71 E-value=4.7 Score=42.52 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=86.1
Q ss_pred cCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 189 GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 189 gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
|.+-+-..| .+.|+.||+.+|+..|.+|.-+. |...|+ +-..+++|||++.=..-
T Consensus 205 G~~L~~~~G--~~iVk~Lr~~~~~~~I~~DLK~~-----------------Di~~~v------v~~~a~aGAD~vTVH~e 259 (391)
T PRK13307 205 GTPLIKKFG--LEVISKIREVRPDAFIVADLKTL-----------------DTGNLE------ARMAADATADAVVISGL 259 (391)
T ss_pred CHHHHHHhC--HHHHHHHHHhCCCCeEEEEeccc-----------------ChhhHH------HHHHHhcCCCEEEEecc
Confidence 444455556 47899999999999999998763 222333 33577999999876653
Q ss_pred CC-chHHHHHHHHHHCCCcccee-ecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC
Q 014017 269 MD-GRVGAIRAALDAEGFQHVSI-MSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG 346 (432)
Q Consensus 269 MD-GrV~aIR~aLD~~Gf~~v~I-mSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG 346 (432)
.. ..+.+..++..+.|. .+.| | ++ |.|..|.+++. ..|
T Consensus 260 a~~~ti~~ai~~akk~Gi-kvgVD~-------------------------------ln----p~tp~e~i~~l----~~~ 299 (391)
T PRK13307 260 APISTIEKAIHEAQKTGI-YSILDM-------------------------------LN----VEDPVKLLESL----KVK 299 (391)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEEE-------------------------------cC----CCCHHHHHHHh----hCC
Confidence 32 235555555555663 3333 2 23 55556656554 457
Q ss_pred CcEEEEcC----C--CchhHHHHHHHhh-CCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 347 ADILLVKP----G--LPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 347 AD~lMVKP----a--l~YLDII~~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.|+|++=. + .+-++-|+++|+. .++++. | .|-|+. |.+..++.+|||++|-
T Consensus 300 vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~---V------------dGGI~~-----eti~~l~~aGADivVV 357 (391)
T PRK13307 300 PDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVA---V------------AGGVRV-----ENVEEALKAGADILVV 357 (391)
T ss_pred CCEEEEccccCCCcccchHHHHHHHHHhCCCCcEE---E------------ECCcCH-----HHHHHHHHcCCCEEEE
Confidence 77775543 1 1234566777764 234443 3 344554 4466777899998763
No 30
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.00 E-value=3 Score=39.19 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
...+.++.+.+.|+..+.+ . + ...++.+|+.. ++=|+-=++-+.|. .-++. ++
T Consensus 24 ~~~~~a~a~~~~G~~~~~~-~------------------~--~~~i~~i~~~~-~~Pil~~~~~d~~~----~~~~~-~~ 76 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRA-N------------------G--VEDIKAIRAVV-DVPIIGIIKRDYPD----SEVYI-TP 76 (221)
T ss_pred HHHHHHHHHHHCCCeEEEc-C------------------C--HHHHHHHHHhC-CCCEEEEEecCCCC----CCceE-CC
Confidence 4677788889999876664 1 0 46788887753 33222000111111 01221 11
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC----C-chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM----D-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM----D-GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sa 312 (432)
+. +++-...++|||+|.|.--+ + ..+..+.+.+.++ .++.++.
T Consensus 77 ------~~----~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~--~~i~vi~-------------------- 124 (221)
T PRK01130 77 ------TL----KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY--PGQLLMA-------------------- 124 (221)
T ss_pred ------CH----HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC--CCCeEEE--------------------
Confidence 22 23344567999999874322 1 4555555666553 2334332
Q ss_pred CCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc----------CCCchhHHHHHHHhhCCCCeEEEEechhh
Q 014017 313 PRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK----------PGLPYLDVIRLLRDKYPLPIAAYQVSGEY 382 (432)
Q Consensus 313 p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK----------Pal~YLDII~~vk~~~~lPvaaYqVSGEY 382 (432)
+ -.|.+|+. .=.+.|+|+|.+- +...-++.++++++.+++|+.+ .+|
T Consensus 125 -----------~----v~t~ee~~----~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia--~GG-- 181 (221)
T PRK01130 125 -----------D----CSTLEEGL----AAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIA--EGR-- 181 (221)
T ss_pred -----------e----CCCHHHHH----HHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEE--ECC--
Confidence 1 12345543 2246799999773 3445589999999999999885 322
Q ss_pred HHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 383 SMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 383 aMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+... |.+..+..+|||.|+-
T Consensus 182 -----------I~t~----~~~~~~l~~GadgV~i 201 (221)
T PRK01130 182 -----------INTP----EQAKKALELGAHAVVV 201 (221)
T ss_pred -----------CCCH----HHHHHHHHCCCCEEEE
Confidence 3211 3334455679998763
No 31
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=91.75 E-value=1.7 Score=44.28 Aligned_cols=169 Identities=15% Similarity=0.176 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHcCCCeEEEe-ec----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLF-PK----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LF-gv----------i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
...+-++.+.+.|...|-|. +. ..+.-.|+.|-.--|.--++.+.|+.||++.++=.|..=+...+|..
T Consensus 153 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~ 232 (338)
T cd02933 153 DFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFN 232 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCC
Confidence 34555667888999999884 32 23456788887666777788899999999986423665555555421
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
. + ..+.|.+...+.+-.++++|+|+|.-|.- +. .... -.|...+=..+|
T Consensus 233 ~---------~--~~~~~~ee~~~~~~~l~~~g~d~i~vs~g---~~------------~~~~-----~~~~~~~~~~ik 281 (338)
T cd02933 233 D---------M--GDSDPEATFSYLAKELNKRGLAYLHLVEP---RV------------AGNP-----EDQPPDFLDFLR 281 (338)
T ss_pred C---------C--CCCCCHHHHHHHHHHHHHcCCcEEEEecC---CC------------CCcc-----cccchHHHHHHH
Confidence 1 1 12334444555666678889999987542 11 0000 011111112234
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCC
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLP 372 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lP 372 (432)
+++ +.|-. ..++.+ ...++.=++|| ||+|++ +|.+..=|+++++++.-.+|
T Consensus 282 ~~~-~ipvi------------~~G~i~--~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~g~~~~ 334 (338)
T cd02933 282 KAF-KGPLI------------AAGGYD--AESAEAALADGKADLVAFGRPFIANPDLVERLKNGAPLN 334 (338)
T ss_pred HHc-CCCEE------------EECCCC--HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhcCCCCC
Confidence 433 12222 223332 33344445665 999976 89999999999998865544
No 32
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=90.88 E-value=8.9 Score=38.44 Aligned_cols=224 Identities=21% Similarity=0.188 Sum_probs=129.3
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-----CeEEEeeecccCCCCCCc
Q 014017 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-----DLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-----dl~IitDVcLc~YTshGH 229 (432)
+++..+.+ -++.|-.-+.- |+.-+...+ ..|-+...-..+..+|+++.|+... +..|..++ -||...=+
T Consensus 46 e~V~~vH~~yl~AGadiI~TnTy~a~~~~l~-~~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~VaGsi--GP~g~~l~ 122 (304)
T PRK09485 46 ELIYQVHLDYFRAGADCAITASYQATFQGFA-ARGLSEAEAEELIRRSVELAKEARDEFWAEKPLVAGSV--GPYGAYLA 122 (304)
T ss_pred HHHHHHHHHHHHhCCCEEEeeccccCHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEec--CCcccccC
Confidence 45555544 57889876544 664221111 1121111124566788888887654 36777764 44433222
Q ss_pred ceee-cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCcccee-ecchhhhccccchhhh
Q 014017 230 DGIV-REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI-MSYTAKYASSFYGPFR 306 (432)
Q Consensus 230 cGIl-~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~I-mSYSaKyASsfYGPFR 306 (432)
.|-- ..+..++.++-.+...+|+-.+.++|+|++.=--|.+ -.+.++.+++.+.. .+.++ .|.+. .
T Consensus 123 ~~~~y~g~~~~~~~~~~~~~~~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~-~~~pv~is~~~----------~ 191 (304)
T PRK09485 123 DGSEYRGDYGLSEEELQDFHRPRIEALAEAGADLLACETIPNLDEAEALVELLKEEF-PGVPAWLSFTL----------R 191 (304)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhc-CCCcEEEEEEe----------C
Confidence 2110 0111266777788889999999999999999887776 34455556665441 12222 33321 1
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhCCCCeEEEEechhhHH
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSM 384 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaM 384 (432)
+ ...-++ -....+++..+.. ..++|.|++==..|. +.+++.+++..++|+.+|==+|+..
T Consensus 192 ~-----------~g~l~~----G~~~~~~~~~l~~--~~~~~~iGiNC~~p~~~~~~l~~~~~~~~~pl~~~PNaG~~~- 253 (304)
T PRK09485 192 D-----------GTHISD----GTPLAEAAALLAA--SPQVVAVGVNCTAPELVTAAIAALRAVTDKPLVVYPNSGEVY- 253 (304)
T ss_pred C-----------CCcCCC----CCCHHHHHHHHhc--CCCceEEEecCCCHHHHHHHHHHHHhccCCcEEEECCCCCCC-
Confidence 0 112244 3445777777642 245899998665443 5666677666789999999888732
Q ss_pred HHHHHHCCCchhhH--HHHHHHHHHHHcCccEe
Q 014017 385 IKAGGALKMIDEQR--VMMESLMCLRRAGADII 415 (432)
Q Consensus 385 ikaAa~~G~id~~~--~~~EsL~~ikRAGAd~I 415 (432)
......|.+... .+.|....+...|+.+|
T Consensus 254 --~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ii 284 (304)
T PRK09485 254 --DAVTKTWHGPADDASLGELAPEWYAAGARLI 284 (304)
T ss_pred --CCCCCcccCCCChHHHHHHHHHHHHcCCeEE
Confidence 112345554322 46677777788888776
No 33
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=90.84 E-value=3.4 Score=41.07 Aligned_cols=174 Identities=22% Similarity=0.261 Sum_probs=113.0
Q ss_pred eEEEeeCCCCcccCCCC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 014017 132 PLFIHEGEEDTPIGAMP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (432)
Q Consensus 132 PlFV~eg~~~~~I~sMP-Gv~r~si~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~ 209 (432)
|+.|.| || |=|.-+.+ +.++.+.++++ .|...|.|=+- .-....|+.+++.
T Consensus 74 p~viaD---------~~fg~y~~~~~-~av~~a~r~~~~aGa~aVkiEd~-----------------~~~~~~I~al~~a 126 (254)
T cd06557 74 ALVVAD---------MPFGSYQTSPE-QALRNAARLMKEAGADAVKLEGG-----------------AEVAETIRALVDA 126 (254)
T ss_pred CeEEEe---------CCCCcccCCHH-HHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHc
Confidence 666665 67 77777775 58888777777 99999887221 1355677777765
Q ss_pred CCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccce
Q 014017 210 YPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (432)
Q Consensus 210 fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ 289 (432)
- +-|+..+-|-|=|.+--.|... .| ..|+..+.+.+.|..+.+||||+|-....=.-....|-+.| +++
T Consensus 127 g--ipV~gHiGL~pq~~~~~gg~~~-~g--rt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v------~iP 195 (254)
T cd06557 127 G--IPVMGHIGLTPQSVNQLGGYKV-QG--KTEEEAERLLEDALALEEAGAFALVLECVPAELAKEITEAL------SIP 195 (254)
T ss_pred C--CCeeccccccceeeeccCCcee-cc--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC------CCC
Confidence 3 4466666677776665444442 12 35677899999999999999999988777433344444443 466
Q ss_pred eecc-hhhhccccchhhhhhhhCCCCCCCc--ccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 290 IMSY-TAKYASSFYGPFREALDSNPRFGDK--KTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 290 ImSY-SaKyASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
+++. |.++++.=.=-+-|.+|-.+.|--| |.|--- -.-..+|+++-..|+.+|.
T Consensus 196 ~igiGaG~~~dgqvlv~~D~lG~~~~~~p~f~k~~~~~----~~~~~~a~~~y~~~v~~~~ 252 (254)
T cd06557 196 TIGIGAGPDCDGQVLVWHDMLGLSPGFKPKFVKRYADL----GELIREAVKAYVEEVKSGS 252 (254)
T ss_pred EEEeccCCCCCceeehHHhhcCCCCCCCCCcHHHHhhh----HHHHHHHHHHHHHHHhcCC
Confidence 6665 3457776666677888776554332 444322 2234567777777776663
No 34
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.82 E-value=4.4 Score=40.00 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=71.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~-AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
++||.||- +.++.+.+. +.+ +|+|-|.+.+.+ +=|...++.+.+..+ .+++|+.-.
T Consensus 16 ~~dg~iD~-~~~~~li~~---l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------- 80 (293)
T PRK04147 16 DEDGQIDE-QGLRRLVRF---NIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------- 80 (293)
T ss_pred CCCCCcCH-HHHHHHHHH---HHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC----------
Confidence 45678874 444555543 445 899998877643 235556666666554 345555421
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEE
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYq 377 (432)
| -.|.+|+++.+..=.+-|||.+||=|-..| ++-.+++-+..++||..||
T Consensus 81 -----------g------------~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn 137 (293)
T PRK04147 81 -----------G------------SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYN 137 (293)
T ss_pred -----------C------------CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1 236788888877778899999999886433 3445566677899999999
Q ss_pred ec
Q 014017 378 VS 379 (432)
Q Consensus 378 VS 379 (432)
..
T Consensus 138 ~P 139 (293)
T PRK04147 138 IP 139 (293)
T ss_pred Cc
Confidence 64
No 35
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=90.77 E-value=3.2 Score=42.14 Aligned_cols=80 Identities=20% Similarity=0.313 Sum_probs=55.1
Q ss_pred HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEE-EEechhhH--HHHHHHHCCC----------chhhH
Q 014017 332 YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAA-YQVSGEYS--MIKAGGALKM----------IDEQR 398 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaa-YqVSGEYa--MikaAa~~G~----------id~~~ 398 (432)
.+|||+.+..=.+-|||+|+| |++.-.|-|+++.+..+.|+.+ .-+.|.+. -++...+.|+ .---.
T Consensus 164 ~deaI~Ra~aY~eAGAD~ifi-~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~ 242 (294)
T TIGR02319 164 LDEAIRRSREYVAAGADCIFL-EAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAAS 242 (294)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-cCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHH
Confidence 379999999999999999999 8999999999999999999854 33344443 2333333332 01124
Q ss_pred HHHHHHHHHHHcCc
Q 014017 399 VMMESLMCLRRAGA 412 (432)
Q Consensus 399 ~~~EsL~~ikRAGA 412 (432)
.+.+.+..|+..|-
T Consensus 243 a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 243 VLRKLFTELREAGT 256 (294)
T ss_pred HHHHHHHHHHHcCC
Confidence 45556666665554
No 36
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=90.62 E-value=7.1 Score=39.08 Aligned_cols=170 Identities=18% Similarity=0.249 Sum_probs=102.7
Q ss_pred cCCCCCceeec-----hhhhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 144 IGAMPGCYRLG-----WRHGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 144 I~sMPGv~r~s-----i~~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
.+-+||=.+|+ +-+..+++++.+.+-|+..||+ |+-+|- .| ..+-+.- -.+.+.++.+|+.++-
T Consensus 10 l~pLPGsP~~~~~~~~i~e~A~~ea~~l~~~GvD~viveN~~d~P~-~~-~~~p~tv---a~m~~i~~~v~~~~~~---- 80 (257)
T TIGR00259 10 LLPLPGSPSFDDNLNAVIDKAWKDAMALEEGGVDAVMFENFFDAPF-LK-EVDPETV---AAMAVIAGQLKSDVSI---- 80 (257)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCC-cC-CCCHHHH---HHHHHHHHHHHHhcCC----
Confidence 45688888886 2234677788888999999999 554553 22 1111111 1234667778887621
Q ss_pred eeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHH-HcCCCe----------ecCCCCCCchHHHHHHHHHHC
Q 014017 217 TDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQA-RAGADV----------VSPSDMMDGRVGAIRAALDAE 283 (432)
Q Consensus 217 tDVcLc~YTshGHcGI--l~~~g~IdND~Tl~~Lak~Avs~A-~AGADi----------VAPSDMMDGrV~aIR~aLD~~ 283 (432)
| +|| ++. |+.++ +..| .+|||. +++.+.++|+-+.+=+.-.+-
T Consensus 81 ------p------~GvnvL~n----d~~aa--------l~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l 136 (257)
T TIGR00259 81 ------P------LGINVLRN----DAVAA--------LAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL 136 (257)
T ss_pred ------C------eeeeeecC----CCHHH--------HHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc
Confidence 1 454 332 23333 3333 356665 477888998887765544454
Q ss_pred CCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC----chh
Q 014017 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL----PYL 359 (432)
Q Consensus 284 Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal----~YL 359 (432)
| .+|.|+.---+=++ ..+. ..+..|+.+++. ...+||-|+|==.. +=.
T Consensus 137 ~-~~v~i~adV~~kh~---------------------~~l~----~~~~~e~a~~~~--~~~~aDavivtG~~TG~~~d~ 188 (257)
T TIGR00259 137 G-SEVKILADIVVKHA---------------------VHLG----NRDLESIALDTV--ERGLADAVILSGKTTGTEVDL 188 (257)
T ss_pred C-CCcEEEeceeeccc---------------------CcCC----CCCHHHHHHHHH--HhcCCCEEEECcCCCCCCCCH
Confidence 5 68988876432221 1233 455666666654 34459999995422 448
Q ss_pred HHHHHHHhhC-CCCeE
Q 014017 360 DVIRLLRDKY-PLPIA 374 (432)
Q Consensus 360 DII~~vk~~~-~lPva 374 (432)
+.++.+|+.. ++|+.
T Consensus 189 ~~l~~vr~~~~~~Pvl 204 (257)
T TIGR00259 189 ELLKLAKETVKDTPVL 204 (257)
T ss_pred HHHHHHHhccCCCeEE
Confidence 8999999854 68874
No 37
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=90.59 E-value=7 Score=39.05 Aligned_cols=172 Identities=23% Similarity=0.367 Sum_probs=106.2
Q ss_pred ccCCCCCceeech--h---hhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 014017 143 PIGAMPGCYRLGW--R---HGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (432)
Q Consensus 143 ~I~sMPGv~r~si--~---~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~I 215 (432)
..+.|||=++|+- + +..+++++.+.+.|+..|++ |+-.|= .|. .+-+-- ..+-+.++.+|+.+ ++
T Consensus 10 HL~pLPGsp~~~~~~~~iie~A~~ea~~l~~~GvDgiiveN~~D~Py-~~~-~~~etv---aaM~~i~~~v~~~~-~~-- 81 (254)
T PF03437_consen 10 HLPPLPGSPRYDGSMEEIIERAVREAEALEEGGVDGIIVENMGDVPY-PKR-VGPETV---AAMARIAREVRREV-SV-- 81 (254)
T ss_pred cCCCCCcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEecCCCCCc-cCC-CCHHHH---HHHHHHHHHHHHhC-CC--
Confidence 3467888888762 1 24677888899999999999 444442 121 111111 22346777888876 22
Q ss_pred EeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHc-CCCee----------cCCCCCCchHHHHHHHHHH
Q 014017 216 YTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARA-GADVV----------SPSDMMDGRVGAIRAALDA 282 (432)
Q Consensus 216 itDVcLc~YTshGHcGI--l~~~g~IdND~Tl~~Lak~Avs~A~A-GADiV----------APSDMMDGrV~aIR~aLD~ 282 (432)
| +|| +.. |+.+++. .|.| |||.| ++.+.++|+-+.+=+.-..
T Consensus 82 -------p------~GVnvL~n----d~~aala--------iA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~ 136 (254)
T PF03437_consen 82 -------P------VGVNVLRN----DPKAALA--------IAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKR 136 (254)
T ss_pred -------C------EEeeeecC----CCHHHHH--------HHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHH
Confidence 2 243 221 3444443 3333 66654 6899999987777555555
Q ss_pred CCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC----ch
Q 014017 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL----PY 358 (432)
Q Consensus 283 ~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal----~Y 358 (432)
-|-. +.|+..-.+-+|+. +. .+...|+.+.+. ...+||-|+|==.. +-
T Consensus 137 l~a~-v~ilaDV~~kh~~~---------------------l~----~~~~~~~~~~a~--~~~~aDaviVtG~~TG~~~~ 188 (254)
T PF03437_consen 137 LGAD-VKILADVHVKHSSP---------------------LA----TRDLEEAAKDAV--ERGGADAVIVTGKATGEPPD 188 (254)
T ss_pred cCCC-eEEEeeechhhccc---------------------CC----CCCHHHHHHHHH--HhcCCCEEEECCcccCCCCC
Confidence 6765 88887654333322 22 334456555543 35899999995432 36
Q ss_pred hHHHHHHHhhCCCCeEE
Q 014017 359 LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 359 LDII~~vk~~~~lPvaa 375 (432)
++-|+++|+..++||..
T Consensus 189 ~~~l~~vr~~~~~PVlv 205 (254)
T PF03437_consen 189 PEKLKRVREAVPVPVLV 205 (254)
T ss_pred HHHHHHHHhcCCCCEEE
Confidence 88999999999999984
No 38
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=90.31 E-value=4.7 Score=40.30 Aligned_cols=166 Identities=22% Similarity=0.269 Sum_probs=106.1
Q ss_pred CC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 147 MP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 147 MP-Gv~r~si~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
|| |-|..+.+ +.++.+.++++ .|...|.|=+ | .-...-|+.+.+. .+-|+.=+-|-|=
T Consensus 83 ~pfg~y~~~~~-~av~~a~r~~~~aGa~aVkiEd----------g-------~~~~~~I~al~~a--gIpV~gHiGL~pq 142 (264)
T PRK00311 83 MPFGSYQASPE-QALRNAGRLMKEAGAHAVKLEG----------G-------EEVAETIKRLVER--GIPVMGHLGLTPQ 142 (264)
T ss_pred CCCCCccCCHH-HHHHHHHHHHHHhCCeEEEEcC----------c-------HHHHHHHHHHHHC--CCCEeeeecccce
Confidence 67 77777775 56777777776 9999988722 1 1244567777655 3446655557677
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecc-hhhhccccch
Q 014017 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYG 303 (432)
Q Consensus 225 TshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY-SaKyASsfYG 303 (432)
|.|--.|..- -| ..|+..+.+.+.|..+.+||||+|-....=.-...+|.+.| ++++.+. |.++++.=.=
T Consensus 143 ~~~~~gg~~i-~g--rt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l------~iP~igiGaG~~~dgqvl 213 (264)
T PRK00311 143 SVNVLGGYKV-QG--RDEEAAEKLLEDAKALEEAGAFALVLECVPAELAKEITEAL------SIPTIGIGAGPDCDGQVL 213 (264)
T ss_pred eecccCCeee-ec--CCHHHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhC------CCCEEEeccCCCCCceee
Confidence 6654434442 23 35677899999999999999999988877443444444444 4677776 4567776666
Q ss_pred hhhhhhhCC----CCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 304 PFREALDSN----PRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 304 PFRdAa~Sa----p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
-+-|.+|-. |+|- |.|--- -....+|+++-..|+.+|.
T Consensus 214 v~~D~lG~~~~~~pkf~--k~~~~~----~~~~~~a~~~y~~~V~~~~ 255 (264)
T PRK00311 214 VWHDMLGLFSGFKPKFV--KRYADL----AGSIREAVKAYVAEVKSGS 255 (264)
T ss_pred eHHhhcCCCCCCCCCch--HhHhhh----HHHHHHHHHHHHHHHhCCC
Confidence 666777653 4442 333222 2334567777777777664
No 39
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=90.10 E-value=2.8 Score=40.10 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=71.5
Q ss_pred CchHHHHHHHHHHCCCc-------cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCH----HHHHHH
Q 014017 270 DGRVGAIRAALDAEGFQ-------HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANY----REALVE 338 (432)
Q Consensus 270 DGrV~aIR~aLD~~Gf~-------~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~----~EAlre 338 (432)
.+-+..+.+.|++.|+. .|.|.|+....- -.+|+.. |.+ +..|.+. ..+. ++.+..
T Consensus 125 ~~~~~~v~~~l~~~~~~~~~~~~~~v~i~Sf~~~~l----~~~~~~~---p~~--~~~~l~~----~~~~~~~~~~~~~~ 191 (256)
T cd08601 125 PGMEEKLLATLDKYGLLTDNLKNGQVIIQSFSKESL----KKLHQLN---PNI--PLVQLLW----YGEGAETYDKWLDE 191 (256)
T ss_pred CCHHHHHHHHHHHcCCCcccCCCCCEEEecCCHHHH----HHHHHhC---CCC--cEEEEec----cCcccccchhHHHH
Confidence 34566788888888874 577777654321 1133332 321 2233333 2221 233333
Q ss_pred HHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 339 AQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 339 ~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+ ..+++.+-+.-....-+++..+++ .+++|.+|.|-. .|.+..+.+.|+|.|||=
T Consensus 192 ~----~~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~wTvn~--------------------~~~~~~l~~~Gvd~IiTD 246 (256)
T cd08601 192 I----KEYAIGIGPSIADADPWMVHLIHK-KGLLVHPYTVNE--------------------KADMIRLINWGVDGMFTN 246 (256)
T ss_pred H----HhcCeEeCCchhhcCHHHHHHHHH-CCCEEEEEecCC--------------------HHHHHHHHhcCCCEEEeC
Confidence 2 336666544323333477887777 489999999832 344456677899999999
Q ss_pred cHHHHHHHHh
Q 014017 419 FALQAARCLC 428 (432)
Q Consensus 419 fA~~~a~wL~ 428 (432)
+...+.++|+
T Consensus 247 ~p~~~~~~~~ 256 (256)
T cd08601 247 YPDRLKEVLK 256 (256)
T ss_pred CHHHHHHhhC
Confidence 9888777763
No 40
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.03 E-value=21 Score=39.57 Aligned_cols=206 Identities=17% Similarity=0.172 Sum_probs=113.4
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014017 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (432)
Q Consensus 133 lFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd 212 (432)
+.|+|.. -+.-.+.++-.|++.+ +.+..++.+-+.|+.++=..|= ..-|. ..-|-.+.+ ...+|.|++..|+
T Consensus 5 v~i~DtT-LRDG~Qs~~~tr~~~~-d~l~ia~~ld~~G~~siE~~GG---atf~~--~~~~~~e~p-~e~lr~l~~~~~~ 76 (593)
T PRK14040 5 LAITDVV-LRDAHQSLFATRLRLD-DMLPIAAKLDKVGYWSLESWGG---ATFDA--CIRFLGEDP-WERLRELKKAMPN 76 (593)
T ss_pred cEEEECC-cccccccccccccCHH-HHHHHHHHHHHcCCCEEEecCC---cchhh--hccccCCCH-HHHHHHHHHhCCC
Confidence 4555532 1223445655688885 6999999999999999988531 11110 001112222 5689999999998
Q ss_pred eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCccce
Q 014017 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVS 289 (432)
Q Consensus 213 l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~~v~ 289 (432)
.-+. .|| -|.-.+--. .+ -|..++...+.| +++|.|++--.|-+ +.-..+|+.+- +.|+....
T Consensus 77 ~~lq---ml~----Rg~n~vg~~-~y--pddvv~~~v~~a---~~~Gid~~rifd~lnd~~~~~~ai~~ak-~~G~~~~~ 142 (593)
T PRK14040 77 TPQQ---MLL----RGQNLLGYR-HY--ADDVVERFVERA---VKNGMDVFRVFDAMNDPRNLETALKAVR-KVGAHAQG 142 (593)
T ss_pred CeEE---EEe----cCcceeccc-cC--cHHHHHHHHHHH---HhcCCCEEEEeeeCCcHHHHHHHHHHHH-HcCCeEEE
Confidence 5442 122 111111100 01 133344444443 57899987666543 44455666665 46774444
Q ss_pred eecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHH
Q 014017 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIR 363 (432)
Q Consensus 290 ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~ 363 (432)
-++|+. +|. |.++ -..+..+++ ++-|||.|-+|=-.-. -++++
T Consensus 143 ~i~yt~----------------~p~------~~~~------~~~~~a~~l---~~~Gad~i~i~Dt~G~l~P~~~~~lv~ 191 (593)
T PRK14040 143 TLSYTT----------------SPV------HTLQ------TWVDLAKQL---EDMGVDSLCIKDMAGLLKPYAAYELVS 191 (593)
T ss_pred EEEEee----------------CCc------cCHH------HHHHHHHHH---HHcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 457753 111 1111 223333333 2459999988743222 58999
Q ss_pred HHHhhCCCCeEEEEechhhHH----HHHHHHCC
Q 014017 364 LLRDKYPLPIAAYQVSGEYSM----IKAGGALK 392 (432)
Q Consensus 364 ~vk~~~~lPvaaYqVSGEYaM----ikaAa~~G 392 (432)
.+|+.+++||. +|.--.+-| ..+|.++|
T Consensus 192 ~lk~~~~~pi~-~H~Hnt~GlA~An~laAieAG 223 (593)
T PRK14040 192 RIKKRVDVPLH-LHCHATTGLSTATLLKAIEAG 223 (593)
T ss_pred HHHHhcCCeEE-EEECCCCchHHHHHHHHHHcC
Confidence 99999999985 676433333 33456666
No 41
>PRK08444 hypothetical protein; Provisional
Probab=89.83 E-value=0.63 Score=47.85 Aligned_cols=218 Identities=15% Similarity=0.179 Sum_probs=124.2
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshG 228 (432)
.-|.++.+ ++++.++++.+.|++.|.|-|-..+. .+-..+.++++.||+.+|++.|- .||..=
T Consensus 76 ~~y~ls~e-eI~~~a~~a~~~G~~ei~iv~G~~p~----------~~~e~y~e~ir~Ik~~~p~i~i~------a~s~~E 138 (353)
T PRK08444 76 NPYTMSHE-EILEIVKNSVKRGIKEVHIVSAHNPN----------YGYEWYLEIFKKIKEAYPNLHVK------AMTAAE 138 (353)
T ss_pred ccccCCHH-HHHHHHHHHHHCCCCEEEEeccCCCC----------CCHHHHHHHHHHHHHHCCCceEe------eCCHHH
Confidence 44889986 69999999999999999995532211 12235789999999999987653 332110
Q ss_pred cceeecCCCccccHHHHHHHHHHHHH-HHHcCCCe--------ecCCCCCCchHHHHHHHHHHCCCccceeecchhhhcc
Q 014017 229 HDGIVREDGVIMNDETVHQLCKQAVS-QARAGADV--------VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (432)
Q Consensus 229 HcGIl~~~g~IdND~Tl~~Lak~Avs-~A~AGADi--------VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyAS 299 (432)
=.- +.+.-.+..++++..|-+.-+. +--.||.+ |+|.-.-.=|...|.+..-+.|+.-+ +.
T Consensus 139 i~~-~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~---------sg 208 (353)
T PRK08444 139 VDF-LSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSN---------AT 208 (353)
T ss_pred HHH-HHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcc---------ce
Confidence 000 0001124457788887776553 22234444 48888887777788777778898432 23
Q ss_pred ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE------------cCCCchhHHHH---H
Q 014017 300 SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV------------KPGLPYLDVIR---L 364 (432)
Q Consensus 300 sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV------------KPal~YLDII~---~ 364 (432)
-.|| .+.++. | .+| --+.||+.+.| .-|--.++. +|..+-.|.++ -
T Consensus 209 ~l~G-----~gEt~e--d----rv~-------hl~~Lr~Lq~~-t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi 269 (353)
T PRK08444 209 MLFG-----HIENRE--H----RID-------HMLRLRDLQDK-TGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAI 269 (353)
T ss_pred eEEe-----cCCCHH--H----HHH-------HHHHHHHhccc-cCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHH
Confidence 3566 433332 1 111 12233333221 123232221 22233333333 2
Q ss_pred HH---hhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 365 LR---DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 365 vk---~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
.| ++++- |=||.|.---.+.+.|...|.=|..-.++|- .-..-|||.-
T Consensus 270 ~Rl~L~~i~n-i~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e-~i~~~ag~~~ 320 (353)
T PRK08444 270 SRILLDNIPH-IKAYWATLTLNLALVAQEFGANDLDGTIEKE-SIQSAAGAKS 320 (353)
T ss_pred HHHhcCCCCc-cccccccCcHHHHHHHHhcCCccCccccccc-cchhhccCCC
Confidence 22 33322 3478887777888888888888877666654 3445677643
No 42
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=89.67 E-value=1.3 Score=45.94 Aligned_cols=70 Identities=29% Similarity=0.493 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CCCe--e---cCCC--
Q 014017 198 LVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GADV--V---SPSD-- 267 (432)
Q Consensus 198 ~v~raIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~A-GADi--V---APSD-- 267 (432)
-...|++..++.||+ +++-+| |. || ++ ..|+..|++ |.|+ | +|.|
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD-----~~---------------~d-~~----~~al~~a~~~g~~l~gVRlDs~gdl~ 242 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVD-----YN---------------ND-VI----TDSLKVAREFGDKLKGVRVDTSKNMI 242 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEe-----cC---------------cc-cH----HHHHHHHHHhCCCccEEEeCCcchHh
Confidence 457899999999996 666655 21 11 11 456677788 9999 6 3345
Q ss_pred ------------------CCCchHHHHHHHHHHCCCccceeec
Q 014017 268 ------------------MMDGRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 268 ------------------MMDGrV~aIR~aLD~~Gf~~v~ImS 292 (432)
|+--.+..+|+.||++||.+|.|+.
T Consensus 243 DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~~~vkI~a 285 (352)
T PRK07188 243 DKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGGKHVKIIV 285 (352)
T ss_pred hhhcccccccccccccccccHHHHHHHHHHHhhCCCCCcEEEE
Confidence 4556788999999999999998875
No 43
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=89.62 E-value=1.2 Score=47.17 Aligned_cols=136 Identities=21% Similarity=0.213 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC--------CCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSP--------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAP--------SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
-|-+.+++++..++..|.|+|== -.=++-||.++.++++++ -+.+
T Consensus 156 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a-------------------------~~eT-- 208 (406)
T cd08207 156 LTPEETAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDH-------------------------AQRT-- 208 (406)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHH-------------------------HHhh--
Confidence 46788999999999999999731 111233444444443332 2222
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEE-echhhHHHHHHHHCCC
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ-VSGEYSMIKAGGALKM 393 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYq-VSGEYaMikaAa~~G~ 393 (432)
|.++-|-.| |-+..+|.++.+..=++.|++++||=|...=++.++.+++..++||-+-- -+|-|. . .-+.|+
T Consensus 209 -G~~~~y~~N---iT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~l~IhaHra~~ga~~--r-~p~~Gi 281 (406)
T cd08207 209 -GRKVMYAFN---ITDDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHSQLPIHGHRNGWGMLT--R-SPALGI 281 (406)
T ss_pred -CCcceEEEe---cCCCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcCCceEEECCCcceecc--c-CCCCCC
Confidence 778888888 34567888888888889999999999997779999999998899997421 111111 0 012233
Q ss_pred chhhHHHHHHHHHHHHcCccEeeh
Q 014017 394 IDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+. .+ + -+-+|=||||.+++
T Consensus 282 -s~-~v-l--~kl~RLaGaD~~~~ 300 (406)
T cd08207 282 -SF-QA-Y--QKLWRLAGVDHLHV 300 (406)
T ss_pred -cH-HH-H--HHHHHHcCCCcccc
Confidence 22 22 2 34567799999987
No 44
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.34 E-value=5.2 Score=38.70 Aligned_cols=109 Identities=26% Similarity=0.334 Sum_probs=68.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-|. ++.+.+. +.+.|+|-|.+.+. .+=|...++.+.+..+ .++.|+.-..
T Consensus 10 ~~dg~iD~~~-~~~~i~~---l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---------- 74 (281)
T cd00408 10 TADGEVDLDA-LRRLVEF---LIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---------- 74 (281)
T ss_pred CCCCCcCHHH-HHHHHHH---HHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC----------
Confidence 3456777444 3333333 44569999988775 3445666666666654 3566554321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
..+.+|+++.+..=.+-|||.+||=|-..| ++-.+.+.+..++|+.-|+.
T Consensus 75 -----------------------~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~ 131 (281)
T cd00408 75 -----------------------ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI 131 (281)
T ss_pred -----------------------CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 224567776666556669999999775433 34555666778899999987
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-+
T Consensus 132 P~ 133 (281)
T cd00408 132 PG 133 (281)
T ss_pred cc
Confidence 54
No 45
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=89.33 E-value=9.4 Score=36.80 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~-g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
.+.++++++.+.|+..+=+ = |-+ ..|-|| ++=.+.++.||+.+|++.+ |+-|=+.
T Consensus 20 ~l~~~~~~l~~~~~~~~H~-D-imD--------g~fvpn~~~G~~~v~~lr~~~~~~~l--DvHLm~~------------ 75 (228)
T PTZ00170 20 KLADEAQDVLSGGADWLHV-D-VMD--------GHFVPNLSFGPPVVKSLRKHLPNTFL--DCHLMVS------------ 75 (228)
T ss_pred HHHHHHHHHHHcCCCEEEE-e-ccc--------CccCCCcCcCHHHHHHHHhcCCCCCE--EEEECCC------------
Confidence 4889999999999998765 1 222 135555 4447899999998888765 6655211
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCC
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGF 285 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG-rV~aIR~aLD~~Gf 285 (432)
| .+... -.++++|||+|.-=-=..- ++..+-+.+.+.|.
T Consensus 76 ----~---p~~~i---~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~ 115 (228)
T PTZ00170 76 ----N---PEKWV---DDFAKAGASQFTFHIEATEDDPKAVARKIREAGM 115 (228)
T ss_pred ----C---HHHHH---HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCC
Confidence 1 11112 2456789998854221111 14455555556674
No 46
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=89.23 E-value=1.9 Score=45.69 Aligned_cols=139 Identities=24% Similarity=0.263 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCC
Q 014017 242 DETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVA--------PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap 313 (432)
=.|.+++++++..++..|.|+|= |..=++-||.++.++++++. +.
T Consensus 151 Gl~~~~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~-------------------------~e-- 203 (407)
T TIGR03332 151 GRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVY-------------------------EQ-- 203 (407)
T ss_pred CCCHHHHHHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------------------------HH--
Confidence 45678899999999999999973 22333444444444444331 11
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh--hCCCCeEEEEechhhHHHHHHHHC
Q 014017 314 RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD--KYPLPIAAYQVSGEYSMIKAGGAL 391 (432)
Q Consensus 314 ~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~--~~~lPvaaYqVSGEYaMikaAa~~ 391 (432)
-|.|+-|-+| |-+...|.++.+..=.++|++.+||=|...=++.++.+++ .+++|| -+|=.|-=++.. .-+.
T Consensus 204 -TG~~~~y~~N---iT~~~~em~~ra~~a~~~G~~~~mv~~~~~G~~~~~~l~~~~~~~lpi-haHra~~ga~~r-~~~~ 277 (407)
T TIGR03332 204 -TGHKTLYAVN---LTGRTFDLKDKAKRAAELGADVLLFNVFAYGLDVLQSLAEDDEIPVPI-MAHPAVSGAYTS-SPFY 277 (407)
T ss_pred -HCCcceEeec---CCCCHHHHHHHHHHHHHhCCCEEEEeccccChHHHHHHHhcCCCCcEE-EEecCccccccc-CCCC
Confidence 2788999998 3466678888888888999999999999877999999998 568898 333322111111 1122
Q ss_pred CCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 392 KMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 392 G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|+ +. ..++=. -+|-||||.|++
T Consensus 278 Gi-s~-~~~l~k--l~RLaGaD~~~~ 299 (407)
T TIGR03332 278 GF-SH-SLLLGK--LLRYAGADFSLF 299 (407)
T ss_pred cc-cH-HHHHHH--HHHhcCcCcccc
Confidence 33 11 122322 356699999986
No 47
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=89.10 E-value=1.2 Score=46.79 Aligned_cols=137 Identities=24% Similarity=0.275 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPS--------DMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
-|-+.+++++..++..|.|+|==- .=+.-||.++.++++++ -+.
T Consensus 137 lsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a-------------------------~~e--- 188 (391)
T cd08209 137 LDLDDLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEV-------------------------YEQ--- 188 (391)
T ss_pred CCHHHHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHH-------------------------HHh---
Confidence 467789999999999999987311 11223333333333332 111
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh--hCCCCeEEE-EechhhHHHHHHHHC
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD--KYPLPIAAY-QVSGEYSMIKAGGAL 391 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~--~~~lPvaaY-qVSGEYaMikaAa~~ 391 (432)
-|-|+-|-.| |-+...|.++.+..=.++|++.+||=|...=+|.++.+++ .+++||-+- ..+|-|.- .-..
T Consensus 189 TG~~~~ya~N---iT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~---~~~~ 262 (391)
T cd08209 189 TGRRTLYAVN---LTGPVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALASDPEINVPIFAHPAFAGALYG---SPDY 262 (391)
T ss_pred hCCcceEEEE---cCCCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHhcCcCCcEEEecCCccccccc---CCCC
Confidence 2778889988 3356789999999889999999999998766999999998 568888742 22332220 1122
Q ss_pred CCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 392 KMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 392 G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|+ +. ..++=. -+|-||||.+++
T Consensus 263 Gi-s~-~~~l~k--l~RLaGaD~~~~ 284 (391)
T cd08209 263 GI-AA-SVLLGT--LMRLAGADAVLF 284 (391)
T ss_pred CC-cH-HHHHHH--HHHHcCCCcccc
Confidence 33 11 123333 356699999975
No 48
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=89.03 E-value=16 Score=36.78 Aligned_cols=93 Identities=13% Similarity=0.282 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHcCCCeEEEee-c----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFP-K----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFg-v----------i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
+..+.++.+.+.|...|-|-+ . ..+.-.|+.|..-.|.--++...++.||+.++ |..|..|+...+|.
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 466677788899999998853 1 13456778887777777788899999999994 88999998865542
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
++| .+-+++ .+.+-.+.++|.|+|.
T Consensus 235 ---------~~g-~~~~e~----~~ia~~Le~~gvd~ie 259 (336)
T cd02932 235 ---------EGG-WDLEDS----VELAKALKELGVDLID 259 (336)
T ss_pred ---------CCC-CCHHHH----HHHHHHHHHcCCCEEE
Confidence 112 222333 3334445678888884
No 49
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.96 E-value=7.8 Score=39.33 Aligned_cols=167 Identities=24% Similarity=0.276 Sum_probs=99.6
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDV 219 (432)
+||+ +|- + ...-+.+.|.+++.+ |++ .. . +-.+-+-|++ ...++.|.+.. ++=|++|.
T Consensus 21 ~p~~----~Da-~--SAri~e~~Gf~ai~~Sg~~~-a~---~---~lG~PD~g~l~~~e~~~~~~~I~~~~-~iPviaD~ 85 (292)
T PRK11320 21 IVGT----INA-Y--HALLAERAGFKAIYLSGGGV-AA---A---SLGLPDLGITTLDDVLIDVRRITDAC-DLPLLVDI 85 (292)
T ss_pred ecCC----CCH-H--HHHHHHHcCCCEEEeCHHHH-Hh---H---hcCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC
Confidence 7888 331 1 223445668888877 332 10 0 1122222443 45566665554 24456553
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCch--------HHHHHHHHHHC
Q 014017 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGR--------VGAIRAALDAE 283 (432)
Q Consensus 220 cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGr--------V~aIR~aLD~~ 283 (432)
++|+= |-..+.+.+ -.+.++||--|---|- +.|+ +..||.+++..
T Consensus 86 ---------------d~GyG-~~~~v~r~V---~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~ 146 (292)
T PRK11320 86 ---------------DTGFG-GAFNIARTV---KSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDAR 146 (292)
T ss_pred ---------------CCCCC-CHHHHHHHH---HHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhc
Confidence 34443 444444433 4567889844443331 2232 55566666554
Q ss_pred CCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHH
Q 014017 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIR 363 (432)
Q Consensus 284 Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~ 363 (432)
.=.++-|++-+--|+. . ..+|||+.+..=.+-|||+|++ |++.-+|-|+
T Consensus 147 ~~~d~~IiARTDa~~~---------------------~---------g~deAI~Ra~aY~eAGAD~ifi-~~~~~~~~i~ 195 (292)
T PRK11320 147 TDPDFVIMARTDALAV---------------------E---------GLDAAIERAQAYVEAGADMIFP-EAMTELEMYR 195 (292)
T ss_pred cCCCeEEEEecCcccc---------------------c---------CHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHH
Confidence 2256778776543321 1 1369999999999999999999 7888999999
Q ss_pred HHHhhCCCCeEEEEe
Q 014017 364 LLRDKYPLPIAAYQV 378 (432)
Q Consensus 364 ~vk~~~~lPvaaYqV 378 (432)
++.+..++|+.+=.+
T Consensus 196 ~~~~~~~~Pl~~n~~ 210 (292)
T PRK11320 196 RFADAVKVPILANIT 210 (292)
T ss_pred HHHHhcCCCEEEEec
Confidence 999999999966333
No 50
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=88.83 E-value=4.6 Score=41.79 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCCeEEEee----cC--------CCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFP----KV--------PDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----vi--------~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
-.+-.+.+.+.|...|-|.+ -+ .+.-.|+.|..--|.--++.+.|+.||++++ +..|..=++.+.|.
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 33444566789999998864 11 3356788887666777788899999999996 66666655555542
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
.....+-...+...+.-.|++...+.+-.+.++|+|.|..|.-
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 2111110000001112234454455566667899999998864
No 51
>PRK07534 methionine synthase I; Validated
Probab=88.83 E-value=24 Score=36.21 Aligned_cols=219 Identities=16% Similarity=0.119 Sum_probs=129.6
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC----CeEEEeeecccCCCCCCcc
Q 014017 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP----DLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP----dl~IitDVcLc~YTshGHc 230 (432)
++++++.+ -++.|-.-+.- |+.-+...+ ..|++ ..-..+..+|+++.|+..- +.+|..+ +.||...-+
T Consensus 45 e~V~~vH~~Yl~AGAdiI~TnTy~as~~~l~-~~~~~-~~~~~l~~~av~lAr~a~~~~~~~~~VaGs--IGP~g~~l~- 119 (336)
T PRK07534 45 DNITALHQGFVDAGSDIILTNSFGGTAARLK-LHDAQ-DRVHELNRAAAEIAREVADKAGRKVIVAGS--VGPTGEIME- 119 (336)
T ss_pred HHHHHHHHHHHHhcCCEEEecCcccCHHHHH-hcCcH-HHHHHHHHHHHHHHHHHHHhcCCccEEEEe--cCCCccccC-
Confidence 46666654 57899665554 553111111 11111 1124566788888887752 4677776 456654332
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhh
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa 309 (432)
..|.++.++-++....|+-.+.++|+|+++=--|.+ -.+.++.+++.+.|. --++|++.+ +
T Consensus 120 ----~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~--Pv~vSft~~----------~-- 181 (336)
T PRK07534 120 ----PMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGM--PWCGTMSFD----------T-- 181 (336)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCC--eEEEEEEEC----------C--
Confidence 245566777888888999999999999999988888 566677777765432 223344321 1
Q ss_pred hCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-ch--hHHHHHH-HhhCCCCeEEEEechhhHHH
Q 014017 310 DSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-PY--LDVIRLL-RDKYPLPIAAYQVSGEYSMI 385 (432)
Q Consensus 310 ~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-~Y--LDII~~v-k~~~~lPvaaYqVSGEYaMi 385 (432)
...-+| =.+..+++..+. +...++|.|++==.. |. +..+..+ +...+.|+.+|==+|+-...
T Consensus 182 ---------~g~l~~----G~~~~~~~~~~~-~~~~~~~avGvNC~~gp~~~~~~l~~~~~~~~~~pl~vyPNaG~p~~~ 247 (336)
T PRK07534 182 ---------AGRTMM----GLTPADLADLVE-KLGEPPLAFGANCGVGASDLLRTVLGFTAQGPERPIIAKGNAGIPKYV 247 (336)
T ss_pred ---------CCeeCC----CCcHHHHHHHHH-hcCCCceEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEcCCCCcccC
Confidence 123344 334456665553 333456999987664 32 3554444 34447899999988883211
Q ss_pred HHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 386 KAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 386 kaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
. ...-|-.....+.|....++.+||.+|
T Consensus 248 ~--~~~~~~~~p~~~~~~~~~~~~~Ga~iI 275 (336)
T PRK07534 248 D--GHIHYDGTPELMAEYAVLARDAGARII 275 (336)
T ss_pred C--CccccCCCHHHHHHHHHHHHHcCCcEE
Confidence 1 000111123456777778889999987
No 52
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=88.36 E-value=3 Score=41.10 Aligned_cols=87 Identities=22% Similarity=0.276 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhchhcCCcEEEE-----cCCCc----------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCC--C
Q 014017 331 NYREALVEAQADESEGADILLV-----KPGLP----------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK--M 393 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMV-----KPal~----------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G--~ 393 (432)
+..+|+.++..-+++|||+|=| .|+.. -..+|+.+++.+++||..= |-.+..+++|.+.| +
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID--T~~~~v~e~al~~G~~i 99 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD--TFRAEVARAALEAGADI 99 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe--CCCHHHHHHHHHhCCCE
Confidence 3489999999999999999999 57765 3457888888889998532 55677888888877 3
Q ss_pred chh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 394 IDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 394 id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|+- ...=-|.+.-+++.||.+|+.+.
T Consensus 100 INdisg~~~~~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 100 INDVSGGSDDPAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred EEeCCCCCCChHHHHHHHHcCCCEEEECC
Confidence 432 10002334456788999999765
No 53
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.09 E-value=6.2 Score=39.22 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=71.2
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||- +.++.+.+.. .+.|+|-|.+.+.. |=|...+|.+.+... .+++||.-..
T Consensus 13 ~~dg~iD~-~~l~~lv~~~---~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------- 77 (294)
T TIGR02313 13 KRNGDIDE-EALRELIEFQ---IEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------- 77 (294)
T ss_pred CCCCCcCH-HHHHHHHHHH---HHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC----------
Confidence 45677774 4444444443 45899988766542 345666666666554 3566653311
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhC-CCCeEEEE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQ 377 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~-~lPvaaYq 377 (432)
-.|.+|+++.+..=.+-|||.+||=|=..| ++-.+.+.+.+ ++||..||
T Consensus 78 -----------------------~~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn 134 (294)
T TIGR02313 78 -----------------------ALNHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYN 134 (294)
T ss_pred -----------------------cchHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEe
Confidence 235678877777666779999999884322 45556777888 89999999
Q ss_pred echh
Q 014017 378 VSGE 381 (432)
Q Consensus 378 VSGE 381 (432)
.-+-
T Consensus 135 ~P~~ 138 (294)
T TIGR02313 135 IPGR 138 (294)
T ss_pred Cchh
Confidence 7553
No 54
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=88.08 E-value=0.62 Score=48.48 Aligned_cols=236 Identities=19% Similarity=0.123 Sum_probs=133.6
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
|.=|.++.+ ++.++++++.+.|++.|++ +|.-|+ . +.+ .....++.||+.||++.|. .||.
T Consensus 85 ~~~y~Ls~e-eI~~~~~~~~~~G~~Evli~gG~~p~-~---------~~~-y~~~~~~~ik~~~p~~~i~------a~s~ 146 (370)
T COG1060 85 PKAYTLSPE-EILEEVREAVKRGITEVLIVGGEHPE-L---------SLE-YYEELFRTIKEEFPDLHIH------ALSA 146 (370)
T ss_pred ccccccCHH-HHHHHHHHHHHcCCeEEEEecCcCCC-c---------chH-HHHHHHHHHHHhCcchhhc------ccCH
Confidence 344788986 7999999999999999998 665332 1 111 7889999999999988776 3332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------------ec-CCCCCCchHHHHHHHHHHCCCccce
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----------------VS-PSDMMDGRVGAIRAALDAEGFQHVS 289 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi----------------VA-PSDMMDGrV~aIR~aLD~~Gf~~v~ 289 (432)
-.=.=+ ...+.....+.++.|- +||.|. ++ |.---+.|+..++.|- +.|...++
T Consensus 147 ~ei~~~-~~~~~~s~~E~l~~Lk-------~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah-~lGI~~ta 217 (370)
T COG1060 147 GEILFL-AREGGLSYEEVLKRLK-------EAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAH-RLGIPTTA 217 (370)
T ss_pred HHhHHH-HhccCCCHHHHHHHHH-------HcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCCccc
Confidence 111111 1246778888888886 566553 23 3333457888888887 68998888
Q ss_pred eecchhhhccccchhhhhhhhCCCCC---CCcccccccccCCCCCHHHHHHHHHhchhcCC-cEEEE--cCCCchhHHHH
Q 014017 290 IMSYTAKYASSFYGPFREALDSNPRF---GDKKTYVIRVIELYANYREALVEAQADESEGA-DILLV--KPGLPYLDVIR 363 (432)
Q Consensus 290 ImSYSaKyASsfYGPFRdAa~Sap~~---gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA-D~lMV--KPal~YLDII~ 363 (432)
.|-|--- .+ ..|.++.--.. -++...=+- .+|-|.+= +.|. -+.-+ ++..-||-+|+
T Consensus 218 tml~Gh~-----E~-~ed~~~hl~~ir~lQ~~~gg~~~--fI~~~f~p---------~~~~~~~~~~~~~~~~~~l~~iA 280 (370)
T COG1060 218 TMLLGHV-----ET-REDRIDHLEHIRDLQDETGGFQE--FIPLRFRP---------ENGPLPAEVVPEASLEQDLKAIA 280 (370)
T ss_pred eeEEEec-----CC-HHHHHHHHHHHHHHHHHhCCcEE--EEcccccC---------CCCCccccCCCCCCHHHHHHHHH
Confidence 8877431 11 22222221100 000000000 00111110 0111 11111 12234555666
Q ss_pred HHHhhC--CCC-eEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH-HHHcCccEeehhcHHHHHHHHhc
Q 014017 364 LLRDKY--PLP-IAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC-LRRAGADIILTYFALQAARCLCG 429 (432)
Q Consensus 364 ~vk~~~--~lP-vaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~-ikRAGAd~IiTYfA~~~a~wL~~ 429 (432)
-.|=.+ .++ +-+|.|.=+-.+.+++-..|.-|..-.++| .. .+.||+.-----=..++.+|+.+
T Consensus 281 iaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt~~~--E~v~~~a~~~~~~~~~~eel~~~i~~ 348 (370)
T COG1060 281 LARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGTGYE--EKVNPAAGAFSGDWRSVEELAALIKE 348 (370)
T ss_pred HHHHHccCccccccCcccccchHHHHHHHHhCcccCcCCCcc--cccccccccccCCCCCHHHHHHHHHH
Confidence 555544 366 889999888888888888888887666555 23 44555543111112455555543
No 55
>PRK05927 hypothetical protein; Provisional
Probab=87.95 E-value=1.1 Score=46.04 Aligned_cols=114 Identities=19% Similarity=0.321 Sum_probs=74.7
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE----eeec-cc
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY----TDVA-LD 222 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii----tDVc-Lc 222 (432)
+.-|+++.+ ++++.++++.+.|++.+.+-|-..+ . .+-..+.++++.||+.||++.+- +.++ +|
T Consensus 71 ~~~y~ls~e-ei~~~a~~~~~~G~~~i~i~gG~~p-----~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~ 139 (350)
T PRK05927 71 SDAYLLSFD-EFRSLMQRYVSAGVKTVLLQGGVHP-----Q-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAA 139 (350)
T ss_pred ccccccCHH-HHHHHHHHHHHCCCCEEEEeCCCCC-----C-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHH
Confidence 455899986 6999999999999999887432111 1 12345789999999999998762 1111 11
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc-CC--------CeecCCCC-CCchHHHHHHHHHHCCC
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA-GA--------DVVSPSDM-MDGRVGAIRAALDAEGF 285 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~A-GA--------DiVAPSDM-MDGrV~aIR~aLD~~Gf 285 (432)
...|. ..+++++.|.+.-+..--- |+ ++++|..+ -|-|+..||.+= +.|+
T Consensus 140 -----------~~~G~-~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~-~lGi 199 (350)
T PRK05927 140 -----------QVSGI-STEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAH-RLGF 199 (350)
T ss_pred -----------HhcCC-CHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHH-HcCC
Confidence 11132 3466666665443311110 22 68899887 499999999764 7787
No 56
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.78 E-value=7.1 Score=37.96 Aligned_cols=106 Identities=24% Similarity=0.292 Sum_probs=63.5
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-|.. ..+.+ -+.++|+|-|.+.+.+ +=|...++.+.+..+ .++.|+.-.
T Consensus 14 ~dg~iD~~~~-~~~i~---~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv------------ 76 (284)
T cd00950 14 DDGSVDFDAL-ERLIE---FQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT------------ 76 (284)
T ss_pred CCCCcCHHHH-HHHHH---HHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc------------
Confidence 4567764444 33433 3446999999877654 234444444444433 234433211
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
- ..|.+|+++.+..=.+-|||.||+=|-..| ++-.+.+-+..++|+.-|+.
T Consensus 77 -----------------~----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 77 -----------------G----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred -----------------C----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 1 335677777776667789999998875443 34455666777899999985
No 57
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=87.69 E-value=1.8 Score=45.79 Aligned_cols=145 Identities=28% Similarity=0.355 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCccccc
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYV 322 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQ 322 (432)
-|-+.+++++..++..|.|+|= |.+++.|-+-+-|..... ...--.++|-+.+ |.|+-|-
T Consensus 147 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~q~~~p~~eRv~-~~~~a~~~a~~eT---G~~~~y~ 206 (407)
T PRK09549 147 RDLDYLKEQLRDQALGGVDLVK----------------DDEILFENALTPFEKRIV-AGKEVLQEVYETT---GHKTLYA 206 (407)
T ss_pred CCHHHHHHHHHHHHhcCCccee----------------cCcCCCCCCCcCHHHHHH-HHHHHHHHHHHhh---CCcceEE
Confidence 4677899999999999999873 344444333222211111 1111111222222 7889999
Q ss_pred ccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh--hCCCCeEEE-EechhhHHHHHHHHCCCchhhHH
Q 014017 323 IRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD--KYPLPIAAY-QVSGEYSMIKAGGALKMIDEQRV 399 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~--~~~lPvaaY-qVSGEYaMikaAa~~G~id~~~~ 399 (432)
+| |-+...|.++.+..=.++|++++||=|...=++.++.+++ .++|||-+- ..+|-|. . .-+.|+ +. .+
T Consensus 207 ~N---iT~~~~em~~ra~~a~~~G~~~~m~~~~~~G~~al~~l~~~~~~~lpIhaHra~~ga~~--r-~~~~Gi-s~-~~ 278 (407)
T PRK09549 207 VN---LTGRTFELKEKAKRAAEAGADALLFNVFAYGLDVLQSLAEDPEIPVPIMAHPAVSGAYT--P-SPLYGI-SS-PL 278 (407)
T ss_pred Ee---cCCCHHHHHHHHHHHHHcCCCeEEEeccccchHHHHHHHhcCCCCcEEEecCCcccccc--c-CCCCcC-cH-HH
Confidence 98 3466789888888888999999999998776999999998 557887531 2222221 1 012333 21 12
Q ss_pred HHHHHHHHHHcCccEeeh
Q 014017 400 MMESLMCLRRAGADIILT 417 (432)
Q Consensus 400 ~~EsL~~ikRAGAd~IiT 417 (432)
++= +-+|=||||.|++
T Consensus 279 ~l~--kl~RLaGaD~~~~ 294 (407)
T PRK09549 279 LLG--KLLRYAGADFSLF 294 (407)
T ss_pred HHH--HHHHHcCCCcccc
Confidence 233 3456699999986
No 58
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.56 E-value=7.1 Score=38.63 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=68.1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||- +.++.|.+- +.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 18 ~~dg~iD~-~~l~~li~~---l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-g~~pvi~gv~---------- 82 (296)
T TIGR03249 18 DADGSFDE-AAYRENIEW---LLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK-GKVPVYTGVG---------- 82 (296)
T ss_pred CCCCCcCH-HHHHHHHHH---HHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 35678874 445555444 44699999887654 2346666666666543 3455553210
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
. |.+||++.++.=.+-|||.+|+=|--.| .+-.+.+.+..++||.-||-
T Consensus 83 -----------------------~-~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~ 138 (296)
T TIGR03249 83 -----------------------G-NTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQR 138 (296)
T ss_pred -----------------------c-cHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 2 4567777777667789999998774322 34445666777899999986
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
+|
T Consensus 139 ~g 140 (296)
T TIGR03249 139 DN 140 (296)
T ss_pred CC
Confidence 55
No 59
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=87.31 E-value=7.4 Score=38.81 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-|. ++.+.+ -+.++|+|-|.+.+.. +=|...++...+..+ .+++|+.-.
T Consensus 21 ~dg~iD~~~-l~~li~---~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv------------ 83 (303)
T PRK03620 21 ADGSFDEAA-YREHLE---WLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA-GRVPVIAGA------------ 83 (303)
T ss_pred CCCCcCHHH-HHHHHH---HHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCcEEEec------------
Confidence 567777443 444444 4556899999886642 235555666665543 345555321
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 379 (432)
. . |.+|+++.+..=.+-|||.+|+=|-..| .+-.+.+.+.+++||..|+-+
T Consensus 84 -----------------~----~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~ 141 (303)
T PRK03620 84 -----------------G----G-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD 141 (303)
T ss_pred -----------------C----C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 0 2 5566666666556679999988775322 344556667788999999877
Q ss_pred h---hhHHHHHHH
Q 014017 380 G---EYSMIKAGG 389 (432)
Q Consensus 380 G---EYaMikaAa 389 (432)
| ....++.-+
T Consensus 142 g~~l~~~~l~~L~ 154 (303)
T PRK03620 142 NAVLTADTLARLA 154 (303)
T ss_pred CCCCCHHHHHHHH
Confidence 6 344444433
No 60
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=87.04 E-value=8.3 Score=37.95 Aligned_cols=117 Identities=18% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCCccccHHHHHHHHHHHHHHHHc-CCCeecCCCCCC--------chHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARA-GADVVSPSDMMD--------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~A-GADiVAPSDMMD--------GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
+||.|| .+.++.+.+-.+. + |+|-|.+.+.+- =|...+|.+.+..+ .+++||.=
T Consensus 14 ~dg~iD-~~~~~~~i~~l~~---~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viag------------ 76 (288)
T cd00954 14 ENGEIN-EDVLRAIVDYLIE---KQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAH------------ 76 (288)
T ss_pred CCCCCC-HHHHHHHHHHHHh---cCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEec------------
Confidence 456776 5555666555444 6 999998777531 24444454444433 13333321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhC-CCCeEEEE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQ 377 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~-~lPvaaYq 377 (432)
.. -.|.+|+++.+..=.+-|||.+|+=|=..| .|-.+.+.+.. ++||..|+
T Consensus 77 -----------------v~----~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn 135 (288)
T cd00954 77 -----------------VG----SLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYH 135 (288)
T ss_pred -----------------cC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 11 346788888887778899999998664332 34445666778 89999998
Q ss_pred e---ch---hhHHHHHHH
Q 014017 378 V---SG---EYSMIKAGG 389 (432)
Q Consensus 378 V---SG---EYaMikaAa 389 (432)
. +| ...+++.-+
T Consensus 136 ~P~~tg~~l~~~~~~~L~ 153 (288)
T cd00954 136 IPALTGVNLTLEQFLELF 153 (288)
T ss_pred CccccCCCCCHHHHHHHh
Confidence 5 45 555666544
No 61
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=86.50 E-value=3.9 Score=42.75 Aligned_cols=136 Identities=24% Similarity=0.333 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPS--------DMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
-|-+.+++++..++..|.|+|==- .=++-||.+..++++++ -+.+
T Consensus 140 lsp~~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a-------------------------~~eT-- 192 (366)
T cd08148 140 LNPKYTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRV-------------------------QEET-- 192 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHH-------------------------HHhh--
Confidence 356789999999999999987311 11233444333333332 1222
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC--CCCeEEE-EechhhHHHHHHHHC
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAY-QVSGEYSMIKAGGAL 391 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~--~lPvaaY-qVSGEYaMikaAa~~ 391 (432)
|.++-|-.| |-+...|.++.+..=+++|++++||=|...=++.++.+++.+ ++||-+- ..+|-|. ..-..
T Consensus 193 -G~~~~y~~N---iT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~l~IhaHrA~~ga~~---~~~~~ 265 (366)
T cd08148 193 -GEKKLYAVN---VTAGTFEIIERAERALELGANMLMVDVLTAGFSALQALAEDFEIDLPIHVHRAMHGAVT---RSKFH 265 (366)
T ss_pred -CCcceEEEE---ccCCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHHhCcCCcEEEeccccccccc---cCCCC
Confidence 778889888 335558888888888999999999999987799999999844 7888652 2223221 11223
Q ss_pred CCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 392 KMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 392 G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
| ++. .++=. -+|-||||.+++
T Consensus 266 G-~~~--~~l~k--l~RLaGaD~~~~ 286 (366)
T cd08148 266 G-ISM--LVLAK--LLRMAGGDFIHT 286 (366)
T ss_pred C-cCH--HHHHH--HHHHcCCCcccc
Confidence 5 333 33333 356689999985
No 62
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=86.03 E-value=9.1 Score=37.57 Aligned_cols=107 Identities=22% Similarity=0.266 Sum_probs=67.3
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
+++|.||-|.. +.+.+ -+.++|+|-|.+.+.+ +=|...++.+.+..+ .+++|+.-.
T Consensus 11 ~~~g~iD~~~~-~~~i~---~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv----------- 74 (285)
T TIGR00674 11 KEDGSVDFAAL-EKLID---FQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT----------- 74 (285)
T ss_pred CCCCCcCHHHH-HHHHH---HHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC-----------
Confidence 34677775444 33333 3347999999876542 234455555555433 245544322
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
- ..|.+|+++.+..=.+-|||.+||=|-..| ++-.+.+.+.+++||..|+.
T Consensus 75 ------------------~----~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~ 132 (285)
T TIGR00674 75 ------------------G----SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNV 132 (285)
T ss_pred ------------------C----CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 1 346678888887778899999999876444 24445666778899999985
No 63
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=85.94 E-value=2.8 Score=42.24 Aligned_cols=98 Identities=20% Similarity=0.315 Sum_probs=66.2
Q ss_pred hhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCch----------hHHHHHHHhhCCCC
Q 014017 309 LDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLPY----------LDVIRLLRDKYPLP 372 (432)
Q Consensus 309 a~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~Y----------LDII~~vk~~~~lP 372 (432)
++-+| +|-|--.|+ +..+|+.++..-++||||||=|= |+... +.+|+.+++.+++|
T Consensus 21 lNvTpDSFsdgg~~~--------~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ 92 (282)
T PRK11613 21 LNVTPDSFSDGGTHN--------SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW 92 (282)
T ss_pred EcCCCCCCCCCCCCC--------CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Confidence 34455 355554443 34889999999999999999998 98773 55788888878888
Q ss_pred eEEEEechhhHHHHHHHHCCC--chh-----hHHHHHHHHHHHHcCccEeehhc
Q 014017 373 IAAYQVSGEYSMIKAGGALKM--IDE-----QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G~--id~-----~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|..= |=....+++|.++|. ||. +.-++|. +++.|+-+||.+.
T Consensus 93 ISID--T~~~~va~~AL~~GadiINDI~g~~d~~~~~~---~a~~~~~vVlmh~ 141 (282)
T PRK11613 93 ISVD--TSKPEVIRESAKAGAHIINDIRSLSEPGALEA---AAETGLPVCLMHM 141 (282)
T ss_pred EEEE--CCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH---HHHcCCCEEEEcC
Confidence 7432 344567777777762 211 2233443 5788999998653
No 64
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=85.80 E-value=1.9 Score=43.44 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=42.7
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 150 v~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
.|+++.+ +++++++++.+.|++.|.|-|-..+ ..+...+.+.++.||+.+|++.+.
T Consensus 67 ~y~ls~e-eI~e~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~i~~~Ik~~~~~i~~~ 122 (343)
T TIGR03551 67 AYLLSLE-EIAERAAEAWKAGATEVCIQGGIHP----------DLDGDFYLDILRAVKEEVPGMHIH 122 (343)
T ss_pred cccCCHH-HHHHHHHHHHHCCCCEEEEEeCCCC----------CCCHHHHHHHHHHHHHHCCCceEE
Confidence 4788986 6999999999999999999742111 112345688999999999987754
No 65
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.61 E-value=17 Score=36.68 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeec--------C-C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK--------V-P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv--------i-~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
...+-++.+.+.|...|-|-+- + | +.-.|+.|-.--|.--++.+-|+.||+.++ |+.|..|+..++|.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 3556667788999999988432 1 2 233578776555666677889999999995 79999999876663
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
.- | .+.+++ .+.+-.+.++|.|+|.-|
T Consensus 230 ~~---------g-~~~eea----~~ia~~Le~~Gvd~iev~ 256 (338)
T cd04733 230 RG---------G-FTEEDA----LEVVEALEEAGVDLVELS 256 (338)
T ss_pred CC---------C-CCHHHH----HHHHHHHHHcCCCEEEec
Confidence 21 2 233333 344445677888888755
No 66
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=85.58 E-value=2.5 Score=44.78 Aligned_cols=136 Identities=18% Similarity=0.247 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeec--------CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVS--------PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVA--------PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
-|-+.+++++..++..|.|+|= |-.=++-||.+..++++++ .+.+
T Consensus 157 lsp~~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a-------------------------~~eT-- 209 (412)
T TIGR03326 157 LSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKV-------------------------EAET-- 209 (412)
T ss_pred CChHHHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHH-------------------------HHHh--
Confidence 4678899999999999999973 2222334555555554433 1222
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh---hCCCCeEEE-EechhhHHHHHHHH
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIKAGGA 390 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~---~~~lPvaaY-qVSGEYaMikaAa~ 390 (432)
|.|+-|-.| |-+...|.++.+..=+++|++.+||=|...=++.++.+++ .+++||-+- ..+|-|. . .-+
T Consensus 210 -G~~~~ya~N---iT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~Hra~~ga~~--~-~~~ 282 (412)
T TIGR03326 210 -GERKEYLAN---ITAPVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRELTEDLGLAIHAHRAMHAAFT--R-NPK 282 (412)
T ss_pred -CCcceEEEE---ecCCHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHHhhccCCeEEEEcCCcccccc--c-CCC
Confidence 677888887 3455688888888888999999999999877999999997 457998751 1222221 0 112
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.|+ +. .++ =+-+|-||||.|++
T Consensus 283 ~Gi-s~--~vl--~kl~RLaGaD~~~~ 304 (412)
T TIGR03326 283 HGI-SM--FAL--AKLYRLIGVDQLHT 304 (412)
T ss_pred CcC-cH--HHH--HHHHHHcCCCeeee
Confidence 333 22 222 23456699999985
No 67
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=85.58 E-value=3.5 Score=44.30 Aligned_cols=206 Identities=23% Similarity=0.237 Sum_probs=129.2
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTsh 227 (432)
=|. |+--|+-+-++|+++.+.||.-|-+|- |.|+..=++.||+++|+.--. +..= + .||..
T Consensus 90 vGY-rhyaDDvVe~Fv~ka~~nGidvfRiFD-------------AlND~RNl~~ai~a~kk~G~h--~q~~--i-~YT~s 150 (472)
T COG5016 90 VGY-RHYADDVVEKFVEKAAENGIDVFRIFD-------------ALNDVRNLKTAIKAAKKHGAH--VQGT--I-SYTTS 150 (472)
T ss_pred ccc-cCCchHHHHHHHHHHHhcCCcEEEech-------------hccchhHHHHHHHHHHhcCce--eEEE--E-EeccC
Confidence 354 444455577899999999999988884 466667789999999987543 3322 3 24432
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC----CC--ccceeecc
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE----GF--QHVSIMSY 293 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~~----Gf--~~v~ImSY 293 (432)
= + -|++...+.|-.+++.|+|.|+--||-- --|.+||+.++-. -+ +.++.|+|
T Consensus 151 P----v---------Ht~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~y 217 (472)
T COG5016 151 P----V---------HTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTY 217 (472)
T ss_pred C----c---------ccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHH
Confidence 1 1 2688889999999999999999999853 2588888887521 11 33455555
Q ss_pred hhhhccccchh-hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhc--hhcCCcEEEEcCCCchhHHHHHHHhhC-
Q 014017 294 TAKYASSFYGP-FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD--ESEGADILLVKPGLPYLDVIRLLRDKY- 369 (432)
Q Consensus 294 SaKyASsfYGP-FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~D--i~EGAD~lMVKPal~YLDII~~vk~~~- 369 (432)
-+-.- =|- +=|.+-|.-+.| |=|-+ -|.+..+.++ -+.|-|+-.++..-.|+ +++|+++
T Consensus 218 lkAvE---AGvD~iDTAisp~S~g---tsqP~--------tEtmv~aL~gt~yDtgld~~~l~~~~~yf---~~vrkkY~ 280 (472)
T COG5016 218 LKAVE---AGVDGIDTAISPLSGG---TSQPA--------TETMVAALRGTGYDTGLDLELLEEIAEYF---REVRKKYK 280 (472)
T ss_pred HHHHH---hCcchhhhhhccccCC---CCCCc--------HHHHHHHhcCCCCCccccHHHHHHHHHHH---HHHHHHHh
Confidence 32211 121 113333333333 33433 6777777765 44777777777665553 3555544
Q ss_pred ----------CCCeEEEEechhh--HHHHHHHHCCCchhhHHHHH
Q 014017 370 ----------PLPIAAYQVSGEY--SMIKAGGALKMIDEQRVMME 402 (432)
Q Consensus 370 ----------~lPvaaYqVSGEY--aMikaAa~~G~id~~~~~~E 402 (432)
+--|-.|||=|-- .|+..--++|.+|.=.-|+|
T Consensus 281 ~~~~~~~~~~d~~ili~qvPGGMlSNl~sQLkeqnaldK~~eVLe 325 (472)
T COG5016 281 GLLEPQAKGVDPRILIYQVPGGMLSNLESQLKEQNALDKLEEVLE 325 (472)
T ss_pred hccCccccCCCCcceEeeCChHHHHHHHHHHHHcchhhHHHHHHH
Confidence 3457789997742 34555567888886444444
No 68
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.51 E-value=2 Score=50.62 Aligned_cols=217 Identities=20% Similarity=0.257 Sum_probs=115.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
..++++.+.+.|+.-|-+|=- .|+-.-+.++|+.+|+. .. ++.+|+| ||.+ |++....
T Consensus 629 ~~~~i~~a~~~Gid~~rifd~-------------lnd~~~~~~~i~~vk~~--g~--~~~~~i~-ytg~----~~d~~~~ 686 (1146)
T PRK12999 629 VRAFVREAAAAGIDVFRIFDS-------------LNWVENMRVAIDAVRET--GK--IAEAAIC-YTGD----ILDPARA 686 (1146)
T ss_pred HHHHHHHHHHcCCCEEEEecc-------------CChHHHHHHHHHHHHHc--CC--eEEEEEE-EEec----CCCCCCC
Confidence 344599999999999999832 22212277889999887 22 6678887 7622 1211111
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH----HCCCccceeecchhhhccccchhhh
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD----AEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD----~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
--|++.+.+.|-...++|||+|+-.||.= -.|.++|+.++ -|. +|+.=|+-+.-.+..--| =
T Consensus 687 ---~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~-Hnt~Gla~an~laA~~aG--a 760 (1146)
T PRK12999 687 ---KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHT-HDTSGNGLATYLAAAEAG--V 760 (1146)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEe-CCCCchHHHHHHHHHHhC--C
Confidence 13667777777778899999999999964 46778888752 222 333334443333333333 1
Q ss_pred hhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC-CC---------Ce
Q 014017 307 EALDSNPR-FGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY-PL---------PI 373 (432)
Q Consensus 307 dAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~-~l---------Pv 373 (432)
|.++++-. +|-+ +=|.+ -|.+..+.. +.+-|-|+=.+...-.| ++.+|+.+ +. =|
T Consensus 761 d~vD~av~glg~~-tgn~~--------le~vv~~L~~~~~~t~idl~~l~~~s~~---~~~~r~~y~~~~~~~~~~~~~v 828 (1146)
T PRK12999 761 DIVDVAVASMSGL-TSQPS--------LNSIVAALEGTERDTGLDLDAIRKLSPY---WEAVRPYYAPFESGLKSPTTEV 828 (1146)
T ss_pred CEEEecchhhcCC-cCCHH--------HHHHHHHHHhcCCCCCcCHHHHHHHHHH---HHHHHhHhhccCCCCCCCCcCe
Confidence 23333332 3433 33443 344444433 22234443333333233 33444333 11 13
Q ss_pred EEEEe-chhhHHHHH-HHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 374 AAYQV-SGEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 374 aaYqV-SGEYaMika-Aa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
--||+ -|-|+=++. +.+.|+.|.=.-++|..-..++-.-++|
T Consensus 829 ~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~ 872 (1146)
T PRK12999 829 YLHEMPGGQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFGDIV 872 (1146)
T ss_pred EEecCCCcccchHHHHHHHCChHhHHHHHHHHHHHHHHHcCCCc
Confidence 33444 355655543 6677887754444444444444444443
No 69
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=85.34 E-value=3.8 Score=37.47 Aligned_cols=62 Identities=31% Similarity=0.318 Sum_probs=43.9
Q ss_pred CHHHHHHHHHhchhcCCcEEEE--------cCCCch---hHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhH
Q 014017 331 NYREALVEAQADESEGADILLV--------KPGLPY---LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMV--------KPal~Y---LDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~ 398 (432)
|..|+++. .+.|||+|.+ ||+... +|.++++++.++ +||.+ .|-++.
T Consensus 113 t~~e~~~a----~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a---------------~GGI~~-- 171 (212)
T PRK00043 113 TLEEAAAA----LAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVA---------------IGGITP-- 171 (212)
T ss_pred CHHHHHHH----hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE---------------ECCcCH--
Confidence 44554333 3579999995 333232 799999999887 99876 455664
Q ss_pred HHHHHHHHHHHcCccEee
Q 014017 399 VMMESLMCLRRAGADIIL 416 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~Ii 416 (432)
|.+..+..+|||.|.
T Consensus 172 ---~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 172 ---ENAPEVLEAGADGVA 186 (212)
T ss_pred ---HHHHHHHHcCCCEEE
Confidence 567788889999987
No 70
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.17 E-value=6.1 Score=42.44 Aligned_cols=117 Identities=20% Similarity=0.207 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC-----CCCccee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS-----SDGHDGI 232 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT-----shGHcGI 232 (432)
+..+.++.+++.|++.+.+=. .+ -..-.+.++|+.||+.||++.||++-|...=+ ..|=++|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~----a~---------g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDT----AH---------GHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeC----CC---------CCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEE
Confidence 467889999999999987722 11 11145678999999999999999985543221 3455554
Q ss_pred ec--CCCc-----cccH---HHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCccceeecc
Q 014017 233 VR--EDGV-----IMND---ETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 233 l~--~~g~-----IdND---~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV---~aIR~aLD~~Gf~~v~ImSY 293 (432)
-- ..|. ...+ .|+.-+.+.|-...+.|..+|| ||.| +-|-++| ..|-.-|.+=|+
T Consensus 292 ~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via-----dGgi~~~~di~kal-a~GA~~vm~g~~ 359 (475)
T TIGR01303 292 KVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA-----DGGVRHPRDVALAL-AAGASNVMVGSW 359 (475)
T ss_pred EECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE-----eCCCCCHHHHHHHH-HcCCCEEeechh
Confidence 20 0111 1122 3444444444444556888887 5554 5677777 467655554443
No 71
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=84.92 E-value=5.2 Score=39.24 Aligned_cols=176 Identities=20% Similarity=0.232 Sum_probs=103.8
Q ss_pred HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 166 ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 166 ~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
+-+.|.+++.+ |++ . .+..+-+-|++ ...++.|-... ++=|++|. ++|+
T Consensus 25 ~e~~Gf~ai~~sg~~~-a-------~s~G~pD~~~lt~~e~~~~~~~I~~~~-~iPv~vD~---------------d~Gy 80 (238)
T PF13714_consen 25 AERAGFDAIATSGAGV-A-------ASLGYPDGGLLTLTEMLAAVRRIARAV-SIPVIVDA---------------DTGY 80 (238)
T ss_dssp HHHTT-SEEEEHHHHH-H-------HHTTS-SSS-S-HHHHHHHHHHHHHHS-SSEEEEE----------------TTTS
T ss_pred HHHcCCCEEEechHHH-H-------HHcCCCCCCCCCHHHHHHHHHHHHhhh-cCcEEEEc---------------cccc
Confidence 34559999887 332 1 11222222443 36677777766 78888874 2343
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCC--------------CCchHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDM--------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
=++-..+. +..-.+.+||+.-|--.|- |=+||.+++++.++.| .-|++-+--|..
T Consensus 81 G~~~~~v~---~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~---~~I~ARTDa~~~----- 149 (238)
T PF13714_consen 81 GNDPENVA---RTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPD---FVIIARTDAFLR----- 149 (238)
T ss_dssp SSSHHHHH---HHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTT---SEEEEEECHHCH-----
T ss_pred CchhHHHH---HHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCe---EEEEEecccccc-----
Confidence 33233333 3334456777766655554 3356666666665555 566665443322
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHH
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSM 384 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaM 384 (432)
..+.+ +||++.+..=.+-|||+|++ |+..-.|-|+++.+.++.|+..-. .+..
T Consensus 150 --------------~~~~~---------deaI~R~~aY~eAGAD~ifi-~~~~~~~~i~~~~~~~~~Pl~v~~-~~~~-- 202 (238)
T PF13714_consen 150 --------------AEEGL---------DEAIERAKAYAEAGADMIFI-PGLQSEEEIERIVKAVDGPLNVNP-GPGT-- 202 (238)
T ss_dssp --------------HHHHH---------HHHHHHHHHHHHTT-SEEEE-TTSSSHHHHHHHHHHHSSEEEEET-TSSS--
T ss_pred --------------CCCCH---------HHHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHHHhcCCCEEEEc-CCCC--
Confidence 23334 69999999999999999998 566667778999888899987765 2221
Q ss_pred HHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcH
Q 014017 385 IKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 385 ikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
-++..+...|...|+--..
T Consensus 203 -----------------~~~~eL~~lGv~~v~~~~~ 221 (238)
T PF13714_consen 203 -----------------LSAEELAELGVKRVSYGNS 221 (238)
T ss_dssp -----------------S-HHHHHHTTESEEEETSH
T ss_pred -----------------CCHHHHHHCCCcEEEEcHH
Confidence 2344567778888765443
No 72
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=84.92 E-value=2.9 Score=44.62 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhh-------hhhCCCC-
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd-------Aa~Sap~- 314 (432)
-|-+.+++++..++..|.|+|= |.+++.|-+ |-||+| |++.+-.
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~q~------------f~p~~eRv~~~~~ai~~a~~e 224 (424)
T cd08208 173 LPPGEFAELGYQSWLGGLDIAK----------------DDEMLADVD------------WCPLEERAALLGKARRRAEAE 224 (424)
T ss_pred CCHHHHHHHHHHHHcCCccccc----------------ccccccCCC------------CCCHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999862 344443322 334332 1111111
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE-EechhhHHHHHHHHCCC
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY-QVSGEYSMIKAGGALKM 393 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY-qVSGEYaMikaAa~~G~ 393 (432)
-|.+|-|-+|+. +..+|.++.+..=.+.|++++||=|...=++.++.+++.+++||.+- ..+|-|.- .-..|+
T Consensus 225 TG~~~~ya~NiT---~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~al~~L~~~~~l~ihaHra~~ga~~r---~~~~Gi 298 (424)
T cd08208 225 TGVPKIYLANIT---DEVDRLMELHDVAVRNGANALLINAMPVGLSAVRMLRKHAQVPLIAHFPFIASFSR---LEKYGI 298 (424)
T ss_pred hCCcceEEEEcc---CCHHHHHHHHHHHHHhCCCEEEEeeecccHHHHHHHHhcCCCeEEeccCccccccC---CCCCCC
Confidence 278899999833 45789888888888999999999999877999999999999998532 12222110 112343
Q ss_pred chhhHHHHHHHHHHHHcCccEeeh
Q 014017 394 IDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+. .+ .=+-+|=+|||.|+.
T Consensus 299 -s~--~v--l~Kl~RLaGaD~ih~ 317 (424)
T cd08208 299 -HS--RV--MTKLQRLAGLDVVIM 317 (424)
T ss_pred -cH--HH--HHHHHHHcCCCeeec
Confidence 22 22 233456699999985
No 73
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=84.70 E-value=36 Score=32.13 Aligned_cols=184 Identities=18% Similarity=0.159 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++.+.++++.+.|..+|.+-+ |.+..+-+.++.. +.+++-.+.| |..| ..
T Consensus 22 d~~~~~~~~~~~g~~av~v~~------------------~~~~~~~~~~~~~-~~~i~~~~~~----~~i~---~p---- 71 (235)
T cd00958 22 DPEETVKLAAEGGADAVALTK------------------GIARAYGREYAGD-IPLIVKLNGS----TSLS---PK---- 71 (235)
T ss_pred CHHHHHHHHHhcCCCEEEeCh------------------HHHHhcccccCCC-CcEEEEECCC----CCCC---CC----
Confidence 699999999999999988843 2333333333211 1233333322 1111 00
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee---cCCCCCC-----chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhh
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVV---SPSDMMD-----GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiV---APSDMMD-----GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa 309 (432)
..+.+.+..+.-...++|||.| ..-...+ =.+.++++.-.+.|. .+-|-.|. +|
T Consensus 72 ----~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~-~~iie~~~-------~g------ 133 (235)
T cd00958 72 ----DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGL-PLIAWMYP-------RG------ 133 (235)
T ss_pred ----CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCC-CEEEEEec-------cC------
Confidence 1122333333344568899866 2211111 167777777777776 34442332 22
Q ss_pred hCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHH
Q 014017 310 DSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 310 ~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa 389 (432)
...++ .++ +....++.+.+ .+.|||+|-+.+- .=++.++++.+..++|+.+ +|=
T Consensus 134 ---~~~~~----~~~----~~~i~~~~~~a---~~~GaD~Ik~~~~-~~~~~~~~i~~~~~~pvv~---~GG-------- 187 (235)
T cd00958 134 ---PAVKN----EKD----PDLIAYAARIG---AELGADIVKTKYT-GDAESFKEVVEGCPVPVVI---AGG-------- 187 (235)
T ss_pred ---CcccC----ccC----HHHHHHHHHHH---HHHCCCEEEecCC-CCHHHHHHHHhcCCCCEEE---eCC--------
Confidence 12232 133 32333333333 3679999999532 2378999999999999732 220
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
-|.-+. +-.+|-+..+.++||+.|..
T Consensus 188 -~~~~~~-~~~l~~~~~~~~~Ga~gv~v 213 (235)
T cd00958 188 -PKKDSE-EEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred -CCCCCH-HHHHHHHHHHHHcCCcEEEe
Confidence 011232 34578888888999998753
No 74
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=84.62 E-value=24 Score=35.57 Aligned_cols=172 Identities=19% Similarity=0.293 Sum_probs=102.7
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC-CCCC------HHHHHHHHHHHCCCeEEEee
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN-DNGL------VPRTIWLLKDRYPDLVIYTD 218 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n-~~g~------v~raIr~iK~~fPdl~IitD 218 (432)
+|++.|=+.. ..-+-+.|+..++. | |..|...+- +|+. +..-.+.+.+..|+-+|++|
T Consensus 18 ~m~tayD~~s-------A~i~~~aG~d~ilv-G-------dSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~D 82 (263)
T TIGR00222 18 VAITAYDYSF-------AKLFADAGVDVILV-G-------DSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTD 82 (263)
T ss_pred EEEeccCHHH-------HHHHHHcCCCEEEE-C-------ccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeC
Confidence 4777755543 23344679988773 4 122222221 1221 23566777788899999999
Q ss_pred ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhh
Q 014017 219 VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKY 297 (432)
Q Consensus 219 VcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A-~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKy 297 (432)
+=+-+| + +.|+. .+-|..+- ++|||.|=-.|= ..+..+=++|.+.| +++|.+
T Consensus 83 mPf~sy---~-----------~~e~a----~~na~rl~~eaGa~aVkiEgg--~~~~~~i~~l~~~g---IpV~gH---- 135 (263)
T TIGR00222 83 LPFMSY---A-----------TPEQA----LKNAARVMQETGANAVKLEGG--EWLVETVQMLTERG---VPVVGH---- 135 (263)
T ss_pred CCcCCC---C-----------CHHHH----HHHHHHHHHHhCCeEEEEcCc--HhHHHHHHHHHHCC---CCEEEe----
Confidence 844433 1 11222 22333444 499999988863 13333337888887 566655
Q ss_pred ccccchhhhhhhhCCCCCCCcc-cccccccCCCCC---HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCe
Q 014017 298 ASSFYGPFREALDSNPRFGDKK-TYVIRVIELYAN---YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPI 373 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~~gDRk-tYQmd~~~~p~N---~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPv 373 (432)
+|=+|+.-..- .|..- =++ .+++|+.+..=++-|||+|.+ |+.+ .++.+++.++.++|+
T Consensus 136 -----------iGltPq~a~~~ggy~~q----grt~~~a~~~i~~A~a~e~AGA~~ivl-E~vp-~~~a~~It~~l~iP~ 198 (263)
T TIGR00222 136 -----------LGLTPQSVNILGGYKVQ----GKDEEAAKKLLEDALALEEAGAQLLVL-ECVP-VELAAKITEALAIPV 198 (263)
T ss_pred -----------cCCCceeEeecCCeeec----CCCHHHHHHHHHHHHHHHHcCCCEEEE-cCCc-HHHHHHHHHhCCCCE
Confidence 44455421111 14332 222 346677777777889999876 6777 699999999999999
Q ss_pred EEE
Q 014017 374 AAY 376 (432)
Q Consensus 374 aaY 376 (432)
...
T Consensus 199 iGI 201 (263)
T TIGR00222 199 IGI 201 (263)
T ss_pred Eee
Confidence 754
No 75
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=84.18 E-value=5.5 Score=42.85 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=66.3
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEee-cCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe--eecccCCCCC
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--DVALDPYSSD 227 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFg-vi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit--DVcLc~YTsh 227 (432)
|+++.+ ++.++++.+.+.|++.+.|.+ .-|+ ..+-..+.++|+.||+.+++-.-+. .|++.+-|
T Consensus 113 ~~Ls~E-EI~~ea~~~~~~G~~~i~LvsGe~p~----------~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt-- 179 (469)
T PRK09613 113 KKLTQE-EIREEVKALEDMGHKRLALVAGEDPP----------NCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTT-- 179 (469)
T ss_pred eECCHH-HHHHHHHHHHHCCCCEEEEEeCCCCC----------CCCHHHHHHHHHHHHHhccccCcceeeEEEeecCC--
Confidence 688986 799999999999999999943 2111 1233457899999998765333222 22333322
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee------------------cCCCCCCchHHHHHHHHHHCCCccce
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV------------------SPSDMMDGRVGAIRAALDAEGFQHVS 289 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV------------------APSDMMDGrV~aIR~aLD~~Gf~~v~ 289 (432)
.+.++. +.+||+|.+ .|..--|=|+.+++.+. +.|+.+|+
T Consensus 180 --------------~eey~~-------LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~-~aGi~~Vg 237 (469)
T PRK09613 180 --------------VENYKK-------LKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAM-EAGIDDVG 237 (469)
T ss_pred --------------HHHHHH-------HHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHH-HcCCCeeC
Confidence 222222 234444441 35556778999999988 68997665
Q ss_pred e
Q 014017 290 I 290 (432)
Q Consensus 290 I 290 (432)
+
T Consensus 238 ~ 238 (469)
T PRK09613 238 I 238 (469)
T ss_pred e
Confidence 4
No 76
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=84.12 E-value=17 Score=40.23 Aligned_cols=219 Identities=17% Similarity=0.175 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
+-+.++++.+.+.|+..|-+|--+.+ . --+.++++..|+.-- .+. +|+ .||..-
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G~--~v~--~~i-~~t~~p-------- 149 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALND-V------------RNMEVAIKAAKKAGA--HVQ--GTI-SYTTSP-------- 149 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecCh-H------------HHHHHHHHHHHHcCC--EEE--EEE-EeccCC--------
Confidence 34678899999999999999864332 1 235678888887643 222 334 233210
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--ccceeecchhhhccccchhh
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aLD~-~Gf--~~v~ImSYSaKyASsfYGPF 305 (432)
. -|++.+.+.|-...++|||+|+-.||.=+ .|.++|+.++- -|+ +|+.=|+-+.-.+..-.|-
T Consensus 150 --~---~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGa- 223 (592)
T PRK09282 150 --V---HTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGV- 223 (592)
T ss_pred --C---CCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCC-
Confidence 1 26778888888889999999999999763 46677776531 122 3444455555444444441
Q ss_pred hhhhhCCC-CCCCcccccccccCCCCCHHHHHHHHHhc--hhcCCcEEEEcCCCchhHHHHHHHhhC----------CCC
Q 014017 306 REALDSNP-RFGDKKTYVIRVIELYANYREALVEAQAD--ESEGADILLVKPGLPYLDVIRLLRDKY----------PLP 372 (432)
Q Consensus 306 RdAa~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~D--i~EGAD~lMVKPal~YLDII~~vk~~~----------~lP 372 (432)
+.++.+- .+|.|.+ |.+ -|.+...+.. .+.|-|+=.+.... +.++++++.+ +.=
T Consensus 224 -d~vD~ai~g~g~~ag-n~~--------~e~vv~~L~~~g~~~~idl~~l~~~s---~~~~~~~~~y~~~~~~~~~~~~~ 290 (592)
T PRK09282 224 -DIIDTAISPLAFGTS-QPP--------TESMVAALKGTPYDTGLDLELLFEIA---EYFREVRKKYKQFESEFTIVDTR 290 (592)
T ss_pred -CEEEeeccccCCCcC-CHh--------HHHHHHHHHhCCCCCccCHHHHHHHH---HHHHHHHHHhhcCCCccccCCcc
Confidence 2233332 3565544 554 4555544432 22333433333332 3344444333 234
Q ss_pred eEEEEechh--hHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe-ehhcH
Q 014017 373 IAAYQVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 420 (432)
Q Consensus 373 vaaYqVSGE--YaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I-iTYfA 420 (432)
|..+|++|- =.+...+.+.|.+|.=.-++|-+...++-.-+.| +|=+.
T Consensus 291 v~~~~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~S 341 (592)
T PRK09282 291 VLIHQVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 341 (592)
T ss_pred EEEEcCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 778999998 4555668889998754555566666666666665 55444
No 77
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=84.03 E-value=5.2 Score=44.36 Aligned_cols=257 Identities=18% Similarity=0.181 Sum_probs=147.2
Q ss_pred CCCCCCCChhhHh-hhccCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC
Q 014017 105 RPRRNRKSPAMRA-SFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA 183 (432)
Q Consensus 105 R~RRlR~~~~~R~-l~~Et~Ls~~~LI~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~ 183 (432)
-.|-++-+||-|= .+++.- |+-.++ ++..|.+ .+|+..|+= +-+..+++.+.+.||.-+-+|=.
T Consensus 54 ~~rfl~edpwerl~~~r~~~--pnt~lq--mL~Rg~N------~vGy~~~~d-~vv~~~v~~a~~~Gidv~Rifd~---- 118 (596)
T PRK14042 54 CLRFLKEDPWSRLRQLRQAL--PNTQLS--MLLRGQN------LLGYRNYAD-DVVRAFVKLAVNNGVDVFRVFDA---- 118 (596)
T ss_pred eecccCCCHHHHHHHHHHhC--CCCceE--EEecccc------ccccccCCh-HHHHHHHHHHHHcCCCEEEEccc----
Confidence 4778888888662 144432 333333 2334555 889888873 34556899999999999888742
Q ss_pred CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC-CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe
Q 014017 184 LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS-SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV 262 (432)
Q Consensus 184 ~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT-shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi 262 (432)
+|+-.-+.++|+.+|+.- . ++-.|+| || ++-| |++.+.+.|-...++|||+
T Consensus 119 ---------lnd~~n~~~~i~~~k~~G--~--~~~~~i~-yt~sp~~--------------t~e~~~~~ak~l~~~Gad~ 170 (596)
T PRK14042 119 ---------LNDARNLKVAIDAIKSHK--K--HAQGAIC-YTTSPVH--------------TLDNFLELGKKLAEMGCDS 170 (596)
T ss_pred ---------CcchHHHHHHHHHHHHcC--C--EEEEEEE-ecCCCCC--------------CHHHHHHHHHHHHHcCCCE
Confidence 555556677999999863 3 4444554 43 4322 6777777777788899999
Q ss_pred ecCCCCCC--------chHHHHHHHHHH-CCC--ccceeecchhhhccccchhhhhhhhCCCC-CCCcccccccccCCCC
Q 014017 263 VSPSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYVIRVIELYA 330 (432)
Q Consensus 263 VAPSDMMD--------GrV~aIR~aLD~-~Gf--~~v~ImSYSaKyASsfYGPFRdAa~Sap~-~gDRktYQmd~~~~p~ 330 (432)
|+-.||.= -.|.+||+.++- -+| +|+.=|+-+.-.+..--| =|.++++-. +|-+ +=|.+
T Consensus 171 I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG--ad~iD~ai~glGg~-tGn~~------ 241 (596)
T PRK14042 171 IAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG--CNHIDTAISSFSGG-ASHPP------ 241 (596)
T ss_pred EEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC--CCEEEeccccccCC-CCcHh------
Confidence 99999974 357788877531 122 345445544433333333 123444433 4443 33433
Q ss_pred CHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC-------CCCeEEEEe-chhhHHHH-HHHHCCCchhhHH
Q 014017 331 NYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY-------PLPIAAYQV-SGEYSMIK-AGGALKMIDEQRV 399 (432)
Q Consensus 331 N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~-------~lPvaaYqV-SGEYaMik-aAa~~G~id~~~~ 399 (432)
-|.+..+.. ..+-|-|+-.+.....|+-=||..-..| +.=|.-||+ -|-|+=++ .+.++|..|.=.-
T Consensus 242 --tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~~~~~~~~~v~~hq~PGG~~snl~~Ql~~~g~~d~~~e 319 (596)
T PRK14042 242 --TEALVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFESEAQNIDPRVQLYQVPGGMISNLYNQLKEQNALDKMDA 319 (596)
T ss_pred --HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCccccCCcceeecCCCcchhhHHHHHHHHCCcHhHHHH
Confidence 355544433 3334555544444444444444333222 122344455 35565444 4778898886555
Q ss_pred HHHHHHHHHHcCccEe
Q 014017 400 MMESLMCLRRAGADII 415 (432)
Q Consensus 400 ~~EsL~~ikRAGAd~I 415 (432)
++|-.-..++-.-+.|
T Consensus 320 v~~e~~~v~~~lG~~~ 335 (596)
T PRK14042 320 VHKEIPRVRKDLGYPP 335 (596)
T ss_pred HHHHHHHHHHHcCCCC
Confidence 5555555555555554
No 78
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=83.44 E-value=6.5 Score=38.29 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC---CCeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY---PDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f---Pdl~IitDVcLc~YTshGHcGIl~ 234 (432)
.+.+.++++.+.|+..|.+=....+..-...|...+-+-.-..+-|++.++.. ++++|++=+ |.| .
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART--Da~--------~- 153 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART--DAL--------L- 153 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc--Cch--------h-
Confidence 58888999999999999983322111111112222222222244555555554 467777421 111 0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecch
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYS 294 (432)
.+...++.-.+.|..+++||||+|-+-..- ....|++.-++ .+.+|+-|.
T Consensus 154 -----~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--~~~~~~~~~~~---~~~Pl~~~~ 203 (243)
T cd00377 154 -----AGEEGLDEAIERAKAYAEAGADGIFVEGLK--DPEEIRAFAEA---PDVPLNVNM 203 (243)
T ss_pred -----ccCCCHHHHHHHHHHHHHcCCCEEEeCCCC--CHHHHHHHHhc---CCCCEEEEe
Confidence 012245566677899999999999875544 45777777665 357888774
No 79
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=83.12 E-value=19 Score=35.94 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=100.0
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVc 220 (432)
.||++|=... .+-+-+.|+..++ -|- ...-. ...+.+-+++ ...++.+.+..+.-+|++|.
T Consensus 15 ~~~~ayD~~s-------A~l~e~aG~d~i~-vGd--s~~~~---~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~- 80 (254)
T cd06557 15 VMLTAYDYPT-------AKLADEAGVDVIL-VGD--SLGMV---VLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM- 80 (254)
T ss_pred EEEeCCCHHH-------HHHHHHcCCCEEE-ECH--HHHHH---HcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC-
Confidence 5888854332 2334456999886 341 10000 0122222332 45666777777877788998
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCC---ccceeecchhh
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAK 296 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~-AGADiVAPSDMMDGrV~aIR~aLD~~Gf---~~v~ImSYSaK 296 (432)
||.+. -+ +.+...+-++..-+ +||+.|--.|= +-.+..||.+- ++|. -++.++.-+..
T Consensus 81 --~fg~y-----------~~---~~~~av~~a~r~~~~aGa~aVkiEd~-~~~~~~I~al~-~agipV~gHiGL~pq~~~ 142 (254)
T cd06557 81 --PFGSY-----------QT---SPEQALRNAARLMKEAGADAVKLEGG-AEVAETIRALV-DAGIPVMGHIGLTPQSVN 142 (254)
T ss_pred --CCCcc-----------cC---CHHHHHHHHHHHHHHhCCeEEEEcCc-HHHHHHHHHHH-HcCCCeeccccccceeee
Confidence 66322 11 23334444454445 99999988773 12455555444 5552 34445554443
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY 376 (432)
+-..|.. . | | + ..-.+++++.+..=.+-|||+|.+ |+.+ -++++++.++.++|+...
T Consensus 143 ~~gg~~~----~-------g-r-----t----~~~a~~~i~ra~a~~~AGA~~i~l-E~v~-~~~~~~i~~~v~iP~igi 199 (254)
T cd06557 143 QLGGYKV----Q-------G-K-----T----EEEAERLLEDALALEEAGAFALVL-ECVP-AELAKEITEALSIPTIGI 199 (254)
T ss_pred ccCCcee----c-------c-C-----C----HHHHHHHHHHHHHHHHCCCCEEEE-cCCC-HHHHHHHHHhCCCCEEEe
Confidence 3322211 0 0 1 0 111367788888778899999887 4556 489999999999999754
No 80
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=83.12 E-value=6 Score=43.02 Aligned_cols=230 Identities=16% Similarity=0.111 Sum_probs=126.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
++|+..|. |+-+.++++.+.+.||..|-+|--+. +---+..+|+.+|+.-- .+..-+| ||.
T Consensus 88 ~vGy~~y~-ddvv~~fv~~a~~~Gidi~RIfd~ln-------------dv~nl~~ai~~vk~ag~--~~~~~i~---yt~ 148 (499)
T PRK12330 88 LLGYRHYE-DEVVDRFVEKSAENGMDVFRVFDALN-------------DPRNLEHAMKAVKKVGK--HAQGTIC---YTV 148 (499)
T ss_pred cCCccCcc-hhHHHHHHHHHHHcCCCEEEEEecCC-------------hHHHHHHHHHHHHHhCC--eEEEEEE---Eec
Confidence 88987777 34577899999999999999986422 22456788999988743 3333333 332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH-H--CCC--ccceeecc
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD-A--EGF--QHVSIMSY 293 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD-~--~Gf--~~v~ImSY 293 (432)
. .++ |++.+.+.|-...++|||.|+-.||.= =.|.+||+.+. . -++ +|+.=|+.
T Consensus 149 s----------p~~---t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~ 215 (499)
T PRK12330 149 S----------PIH---TVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTL 215 (499)
T ss_pred C----------CCC---CHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHH
Confidence 1 112 777778888888899999999999974 35677777762 1 111 45544555
Q ss_pred hhhhccccchhhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC-
Q 014017 294 TAKYASSFYGPFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY- 369 (432)
Q Consensus 294 SaKyASsfYGPFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~- 369 (432)
+.-.+..=-|- |.++++-. +|-+ +=|.+ -|.+..+.. ..+-|-|+-.+.....|+-=++..-..|
T Consensus 216 An~laAieAGa--d~vDtai~Glg~~-aGn~a--------tE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~ 284 (499)
T PRK12330 216 VSLMKAIEAGV--DVVDTAISSMSLG-PGHNP--------TESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFE 284 (499)
T ss_pred HHHHHHHHcCC--CEEEeeccccccc-ccchh--------HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 44333333331 12333322 2222 22222 244444433 2333555555555444444443322222
Q ss_pred ------CCCeEEEEechh-hHHHHH-HHHCCCchhhHHHHHHHHHHHHcCccEe-ehhc
Q 014017 370 ------PLPIAAYQVSGE-YSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII-LTYF 419 (432)
Q Consensus 370 ------~lPvaaYqVSGE-YaMika-Aa~~G~id~~~~~~EsL~~ikRAGAd~I-iTYf 419 (432)
+.++--|||=|. |+-+.. +-++|..|.=.-++|-.-..++..-+.+ +|=+
T Consensus 285 ~~~~~~d~~v~~~qiPGGm~snl~~Ql~~~g~~d~~~ev~~e~~~Vr~~lG~~~~VTP~ 343 (499)
T PRK12330 285 SKTTGVETEIFKSQIPGGMLSNMESQLKQQGAGDRMDEVLEEVPRVRKDAGYPPLVTPS 343 (499)
T ss_pred ccccCCCCccccCCCCCCchhhHHHHHHHcChhhHHHHHHHHHHHHHHHcCCCCeeCCh
Confidence 456666766543 443333 5567777753444444444444444443 4433
No 81
>PRK15063 isocitrate lyase; Provisional
Probab=83.02 E-value=17 Score=39.09 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC--ccc-ccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 271 GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD--KKT-YVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD--Rkt-YQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
.||.|+|.+-|..|- ++-|++-+---+..+--.==|--+-.--.|. +.. |+.. ...++||..+..=.+ ||
T Consensus 206 ~kL~AAr~A~d~~g~-~~vIiARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~-----~Gld~AI~Ra~AYa~-GA 278 (428)
T PRK15063 206 RKLVAARLAADVMGV-PTLVIARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVK-----AGIEQAIARGLAYAP-YA 278 (428)
T ss_pred HHHHHHHHHHHhcCC-CeEEEEECCccccccccccccccccccccCCCccccccccc-----cCHHHHHHHHHHHhc-CC
Confidence 467788888888885 5778776443322211100000000000122 222 4443 457899998886555 99
Q ss_pred cEEEEcCCCchhHHHHHHHhhCC--CC--eEEEEechhhH
Q 014017 348 DILLVKPGLPYLDVIRLLRDKYP--LP--IAAYQVSGEYS 383 (432)
Q Consensus 348 D~lMVKPal~YLDII~~vk~~~~--lP--vaaYqVSGEYa 383 (432)
|+|.+..+.+-++-++++.+..+ +| +.+|+-|--+.
T Consensus 279 D~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~sPsfn 318 (428)
T PRK15063 279 DLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSFN 318 (428)
T ss_pred CEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCCCCcc
Confidence 99999988899999999998765 48 99998888776
No 82
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=82.92 E-value=6.4 Score=38.61 Aligned_cols=125 Identities=19% Similarity=0.276 Sum_probs=72.1
Q ss_pred hhHhhhccCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-ccCcC
Q 014017 114 AMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-TGDEA 192 (432)
Q Consensus 114 ~~R~l~~Et~Ls~~~LI~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~-~gs~A 192 (432)
.+|++.+-+. .|+.|.-+.. ..+ +. .++.+.|+++.+.|+-.+.| . + .|.. .+..-
T Consensus 60 ~~~~I~~~~~-------iPv~vD~d~G------yG~----~~-~~v~~tv~~~~~aG~agi~I--E--D-q~~~~~~~~l 116 (238)
T PF13714_consen 60 AVRRIARAVS-------IPVIVDADTG------YGN----DP-ENVARTVRELERAGAAGINI--E--D-QRCGHGGKQL 116 (238)
T ss_dssp HHHHHHHHSS-------SEEEEE-TTT------SSS----SH-HHHHHHHHHHHHCT-SEEEE--E--S-BSTTTSTT-B
T ss_pred HHHHHHhhhc-------CcEEEEcccc------cCc----hh-HHHHHHHHHHHHcCCcEEEe--e--c-cccCCCCCce
Confidence 4555555443 7998874433 100 12 25889999999999999887 2 2 2322 11111
Q ss_pred cCCCCCHHHHHHHHHHHC--CCeEEEe--eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 193 YNDNGLVPRTIWLLKDRY--PDLVIYT--DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 193 ~n~~g~v~raIr~iK~~f--Pdl~Iit--DVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
.+. .-...=||++++.- ++++|++ |..+. +...++.-.+-+..|++||||+|-+-.+
T Consensus 117 ~~~-ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~------------------~~~~~deaI~R~~aY~eAGAD~ifi~~~ 177 (238)
T PF13714_consen 117 VSP-EEMVAKIRAAVDARRDPDFVIIARTDAFLR------------------AEEGLDEAIERAKAYAEAGADMIFIPGL 177 (238)
T ss_dssp --H-HHHHHHHHHHHHHHSSTTSEEEEEECHHCH------------------HHHHHHHHHHHHHHHHHTT-SEEEETTS
T ss_pred eCH-HHHHHHHHHHHHhccCCeEEEEEecccccc------------------CCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 111 11123345555433 6788874 33222 4455566666788999999999998887
Q ss_pred CC-chHHHHHHHH
Q 014017 269 MD-GRVGAIRAAL 280 (432)
Q Consensus 269 MD-GrV~aIR~aL 280 (432)
.+ ..|..+.+.+
T Consensus 178 ~~~~~i~~~~~~~ 190 (238)
T PF13714_consen 178 QSEEEIERIVKAV 190 (238)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhc
Confidence 75 4677777777
No 83
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=82.23 E-value=4.1 Score=43.24 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCccccc
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYV 322 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQ 322 (432)
-|-+.+++++..++..|.|+|= |.+++.|-+-+-|.....- .+---++|-+. -|.++-|-
T Consensus 144 lsp~~~a~~~y~~~~GGvD~iK----------------DDE~l~~q~~~p~~~Rv~~-~~~a~~~a~~e---TG~~~~y~ 203 (412)
T cd08213 144 LSPEEHAEVAYEALVGGVDLVK----------------DDENLTSQPFNRFEERAKE-SLKARDKAEAE---TGERKAYL 203 (412)
T ss_pred CCHHHHHHHHHHHHhcCCcccc----------------cCccCCCCCCCCHHHHHHH-HHHHHHHHHHh---hCCcceEE
Confidence 4678899999999999999873 3444433322222111100 00000111111 27888999
Q ss_pred ccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh---hCCCCeEEE-EechhhHHHHHHHHCCCchhhH
Q 014017 323 IRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAY-QVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~---~~~lPvaaY-qVSGEYaMikaAa~~G~id~~~ 398 (432)
+| |-+...|.++.+..=.+.|++++||=+...=++.++.+++ .+++||-+- ..+|-|. . .-..|+ +. .
T Consensus 204 ~N---iT~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ihaHra~~ga~~--r-~~~~Gi-s~-~ 275 (412)
T cd08213 204 AN---ITAPVREMERRAELVADLGGKYVMIDVVVAGWSALQYLRDLAEDYGLAIHAHRAMHAAFT--R-NPRHGI-SM-L 275 (412)
T ss_pred EE---ecCCHHHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHHhccccCeEEEECCCcceecc--c-CCcCcC-cH-H
Confidence 88 3355789899888889999999999999877999999998 446888651 1122211 0 012343 22 1
Q ss_pred HHHHHHHHHHHcCccEeeh
Q 014017 399 VMMESLMCLRRAGADIILT 417 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiT 417 (432)
++= +-+|=||||.|++
T Consensus 276 -~l~--kl~RLaGaD~ih~ 291 (412)
T cd08213 276 -VLA--KLYRLIGVDQLHI 291 (412)
T ss_pred -HHH--HHHHHcCCCcccc
Confidence 222 2346689999985
No 84
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=82.08 E-value=8.2 Score=41.27 Aligned_cols=227 Identities=19% Similarity=0.185 Sum_probs=128.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
..|..+|+= +-+.++++.+.+.|+..|-+|-.+.+. . -+.++|+..|+.-- .+-+|+| ||.
T Consensus 87 ~~G~~~~pd-dvv~~~v~~A~~~Gvd~irif~~lnd~---------~----n~~~~v~~ak~~G~----~v~~~i~-~t~ 147 (448)
T PRK12331 87 LLGYRNYAD-DVVESFVQKSVENGIDIIRIFDALNDV---------R----NLETAVKATKKAGG----HAQVAIS-YTT 147 (448)
T ss_pred ccccccCch-hhHHHHHHHHHHCCCCEEEEEEecCcH---------H----HHHHHHHHHHHcCC----eEEEEEE-eec
Confidence 788888874 357788999999999999998643321 1 16778998888743 2233342 332
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH----HCCCccceeecch
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD----AEGFQHVSIMSYT 294 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD----~~Gf~~v~ImSYS 294 (432)
. .. .|++.+.+.|-...++|||.|+=.||.= -.|.+||+.++ -|. +|+.=|+-+
T Consensus 148 ~----------p~---~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~-Hnt~GlA~A 213 (448)
T PRK12331 148 S----------PV---HTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHT-HATSGIAEM 213 (448)
T ss_pred C----------CC---CCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEe-cCCCCcHHH
Confidence 1 11 3566667777777899999999999975 35667776652 122 344445555
Q ss_pred hhhccccchhhhhhhhCCC-CCCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC--
Q 014017 295 AKYASSFYGPFREALDSNP-RFGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY-- 369 (432)
Q Consensus 295 aKyASsfYGPFRdAa~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~-- 369 (432)
.-.+..-.|- +.++++- .+|.+ +=|.+ -|.+..+.. .++-|-|+=.+... -+.++.+++.+
T Consensus 214 N~laAieaGa--d~vD~sv~glg~g-aGN~~--------tE~lv~~L~~~g~~tgidl~~L~~~---~~~~~~~r~~y~~ 279 (448)
T PRK12331 214 TYLKAIEAGA--DIIDTAISPFAGG-TSQPA--------TESMVAALQDLGYDTGLDLEELSEI---AEYFNPIRDHYRE 279 (448)
T ss_pred HHHHHHHcCC--CEEEeeccccCCC-cCCHh--------HHHHHHHHHhcCCCCCCCHHHHHHH---HHHHHHHHHHHHh
Confidence 5455444442 2233332 24544 44554 355554443 23334443333222 23345555544
Q ss_pred --CCC---------eEEEEec-hhhHHHH-HHHHCCCchhhHHHHHHHHHHHHcCccEe-ehhcH
Q 014017 370 --PLP---------IAAYQVS-GEYSMIK-AGGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 420 (432)
Q Consensus 370 --~lP---------vaaYqVS-GEYaMik-aAa~~G~id~~~~~~EsL~~ikRAGAd~I-iTYfA 420 (432)
.+| |--||+= |-|+-++ .+.+.|..|.=.-++|-+-..++-.-+.| +|=+.
T Consensus 280 ~~~~~~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 344 (448)
T PRK12331 280 EGILNPKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGAEDKYEEVLKEVPKVRADLGYPPLVTPLS 344 (448)
T ss_pred hccCCcccccCCcCeeecCCCcchHhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeeCChh
Confidence 133 4566764 4565444 47788988854444554444554444444 56443
No 85
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=81.96 E-value=7.1 Score=40.05 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=42.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~I 215 (432)
.+. +.++.+ ++.++++.+.+.|++.|.|+|--++.. .+-.-+.++++.||+.||++.|
T Consensus 98 ~~~-~~Ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~~---------~~~e~l~eii~~Ik~~~p~i~I 155 (366)
T TIGR02351 98 IKR-KKLNEE-EIEREIEAIKKSGFKEILLVTGESEKA---------AGVEYIAEAIKLAREYFSSLAI 155 (366)
T ss_pred Ccc-CcCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCCC---------CCHHHHHHHHHHHHHhCCcccc
Confidence 344 677885 699999999999999999874212211 1123578999999999997653
No 86
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=81.96 E-value=15 Score=37.25 Aligned_cols=155 Identities=23% Similarity=0.276 Sum_probs=92.5
Q ss_pred HHHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 165 KARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 165 ~~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
-+.+.|.+++.+ +++ .. +..+-+-|++ ...++.|-+.. ++=|++|. ++|
T Consensus 28 i~e~aGf~Ai~~sg~~~-a~-------~lG~pD~g~lt~~e~~~~~~~I~~~~-~iPviaD~---------------d~G 83 (285)
T TIGR02317 28 LAERAGFEAIYLSGAAV-AA-------SLGLPDLGITTLDEVAEDARRITRVT-DLPLLVDA---------------DTG 83 (285)
T ss_pred HHHHcCCCEEEEcHHHH-HH-------hCCCCCCCCCCHHHHHHHHHHHHhcc-CCCEEEEC---------------CCC
Confidence 345569999888 332 11 1122222332 35566665554 45566663 223
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCch--------HHHHHHHHHHCCCccceeecchhhhcccc
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGR--------VGAIRAALDAEGFQHVSIMSYTAKYASSF 301 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGr--------V~aIR~aLD~~Gf~~v~ImSYSaKyASsf 301 (432)
+=+ -..+ .+..-.+.+|||.-|---|- |.|+ +..||.+.+...=.++-|++-+--|..
T Consensus 84 yG~-~~~v---~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~-- 157 (285)
T TIGR02317 84 FGE-AFNV---ARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAV-- 157 (285)
T ss_pred CCC-HHHH---HHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccc--
Confidence 222 2222 23344567888854444431 2232 555555555443256777776543421
Q ss_pred chhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEe
Q 014017 302 YGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 302 YGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqV 378 (432)
+ ..+|||+.+..=.+-|||+|+| |++.-+|-|+++.+..+.|+.+=.+
T Consensus 158 -------------------~---------g~deAI~Ra~ay~~AGAD~vfi-~g~~~~e~i~~~~~~i~~Pl~~n~~ 205 (285)
T TIGR02317 158 -------------------E---------GLDAAIERAKAYVEAGADMIFP-EALTSLEEFRQFAKAVKVPLLANMT 205 (285)
T ss_pred -------------------c---------CHHHHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHHHhcCCCEEEEec
Confidence 1 1369999999988999999999 7888899999999999999854434
No 87
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=81.88 E-value=2.5 Score=42.00 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=42.5
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
..|+++.+ +++++++++.+.|++.|.|.|--.+ ..+...+.+.++.||+.+|++.+.
T Consensus 32 ~~~~ls~e-eI~~~~~~~~~~G~~~i~l~gg~~~----------~~~~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 32 DAYVLSLE-EILEKVKEAVAKGATEVCIQGGLNP----------QLDIEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred CcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCC----------CCCHHHHHHHHHHHHHHCCCceEE
Confidence 35788986 6999999999999999999652111 111235788999999999987654
No 88
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=81.56 E-value=58 Score=33.19 Aligned_cols=187 Identities=19% Similarity=0.167 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHCC---CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----------
Q 014017 196 NGLVPRTIWLLKDRYP---DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV---------- 262 (432)
Q Consensus 196 ~g~v~raIr~iK~~fP---dl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi---------- 262 (432)
+.+.++-++...++-- -|+|.-.+++++- ..++-| .-.+.+|+-++.|-+.+-.--+.|+-+
T Consensus 29 ~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~-~~~~~~----~~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~ 103 (353)
T cd02930 29 DDGIDRLAAFYAERARGGVGLIVTGGFAPNEA-GKLGPG----GPVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRY 103 (353)
T ss_pred CCCCHHHHHHHHHHhcCCceEEEEeeEEeCCc-ccCCCC----CcccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCC
Confidence 3456777887776552 4777777777654 222211 123677888888888765444445433
Q ss_pred ------ecCCCC------------C--------CchHHHHHHHHHHCCCccceeec-c--------hh-------hhccc
Q 014017 263 ------VSPSDM------------M--------DGRVGAIRAALDAEGFQHVSIMS-Y--------TA-------KYASS 300 (432)
Q Consensus 263 ------VAPSDM------------M--------DGrV~aIR~aLD~~Gf~~v~ImS-Y--------Sa-------KyASs 300 (432)
++||.+ - |.-+.|.+.+ .++||.-|-|.. + |. +|-.+
T Consensus 104 ~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a-~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs 182 (353)
T cd02930 104 AYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALA-REAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS 182 (353)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC
Confidence 677753 1 2223344443 358998888854 1 11 12222
Q ss_pred cchhhh----------hhhhCCCCCCCccc---ccccccCCCCCHHHHHHHHHhchhcCCcEEEEc------CC------
Q 014017 301 FYGPFR----------EALDSNPRFGDKKT---YVIRVIELYANYREALVEAQADESEGADILLVK------PG------ 355 (432)
Q Consensus 301 fYGPFR----------dAa~Sap~~gDRkt---YQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK------Pa------ 355 (432)
+-.-.| ++++.--..+=|-+ |.-+ --...|++.=+.+=.+.|+|+|=|- |.
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~----g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~ 258 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG----GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATS 258 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC----CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccc
Confidence 222222 23321101111111 1000 0133555544433334599999772 21
Q ss_pred ---CchhHHHHHHHhhCCCCeEEEEechhh---HHHHHHHHCCCch
Q 014017 356 ---LPYLDVIRLLRDKYPLPIAAYQVSGEY---SMIKAGGALKMID 395 (432)
Q Consensus 356 ---l~YLDII~~vk~~~~lPvaaYqVSGEY---aMikaAa~~G~id 395 (432)
..+++..+++|+.+++||++ .|.+ .+...+.+.|+.|
T Consensus 259 ~~~~~~~~~~~~ik~~v~iPVi~---~G~i~~~~~a~~~i~~g~~D 301 (353)
T cd02930 259 VPRGAFAWATAKLKRAVDIPVIA---SNRINTPEVAERLLADGDAD 301 (353)
T ss_pred CCchhhHHHHHHHHHhCCCCEEE---cCCCCCHHHHHHHHHCCCCC
Confidence 12688999999999999987 3332 3444444455444
No 89
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.62 E-value=5.5 Score=41.04 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eec
Q 014017 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVA 220 (432)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit-DVc 220 (432)
+-.+++.++++.|+ ..+.| +-. .-....+++.|+.||++||++.||+ ||+
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~i----D~a---------~gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITI----DIA---------HGHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----ECC---------CCchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 35688888888866 65554 111 1334567889999999999988886 554
No 90
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=80.61 E-value=25 Score=34.47 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
.|.+|++..+..=.+=|||.+|+=|-..| .+-.+++-+.+++|+.-||.
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~ 135 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNV 135 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 35677777666556668898888665332 33344555667888888874
No 91
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=80.58 E-value=5.8 Score=42.19 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhh-------hhCCCC-
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA-------LDSNPR- 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdA-------a~Sap~- 314 (432)
-|-+.+++++..++..|.|+|= |.+++.|- =|.||++- ++.+-+
T Consensus 145 lsp~~~a~~~y~~~~GGiD~IK----------------DDE~l~~q------------~~~p~~eRv~~~~~a~~~a~~e 196 (414)
T cd08206 145 LSPKEYARVVYEALRGGLDFVK----------------DDENQNSQ------------PFMRFEDRILFVAEAMDKAEAE 196 (414)
T ss_pred CCHHHHHHHHHHHHhcCCcccc----------------cCccCCCC------------CCCcHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 34444332 23344322 111111
Q ss_pred CCCcccccccccCCCCC-HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh---CCCCeEEE-EechhhHHHHHHH
Q 014017 315 FGDKKTYVIRVIELYAN-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK---YPLPIAAY-QVSGEYSMIKAGG 389 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N-~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~---~~lPvaaY-qVSGEYaMikaAa 389 (432)
-|.++-|-+| |-+. .+|.++.+..=.++|++++||=|...=++.++.+++. +++||-+- ..+|-|. . .-
T Consensus 197 TG~~~~y~~N---iT~~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~--~-~~ 270 (414)
T cd08206 197 TGEAKGHYLN---ITADTPEEMIKRAEFAKELGSVIVMVDGVTAGWTAIQSARRWCPDNGLALHAHRAGHAAFT--R-QK 270 (414)
T ss_pred hCCcceEEec---cCCCcHHHHHHHHHHHHHhCCcEEEEeeecccHHHHHHHHHhccccCeEEEEccccceecc--c-CC
Confidence 2788999998 3345 6899999998899999999999998879999999985 45887542 1222221 1 11
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+.|+ +. .+ .-+-+|-||||.|++
T Consensus 271 ~~Gi-s~-~v---l~kl~RLaGaD~ih~ 293 (414)
T cd08206 271 NHGI-SM-RV---LAKLARLIGVDHIHT 293 (414)
T ss_pred CCcC-cH-HH---HHHHHHHcCCCcccc
Confidence 2343 22 22 233456799999986
No 92
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=80.27 E-value=24 Score=39.20 Aligned_cols=227 Identities=18% Similarity=0.157 Sum_probs=126.6
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshG 228 (432)
|..+|+ |+-+.++++.+.+.|+..|-+|-. .|+-.-+..+|+..|+..- .+.. |+ .||...
T Consensus 90 g~~~yp-ddvv~~~v~~a~~~Gid~~rifd~-------------lnd~~~~~~ai~~ak~~G~--~~~~--~i-~yt~~p 150 (593)
T PRK14040 90 GYRHYA-DDVVERFVERAVKNGMDVFRVFDA-------------MNDPRNLETALKAVRKVGA--HAQG--TL-SYTTSP 150 (593)
T ss_pred ccccCc-HHHHHHHHHHHHhcCCCEEEEeee-------------CCcHHHHHHHHHHHHHcCC--eEEE--EE-EEeeCC
Confidence 444554 334678899999999999999842 2221246678899988753 2222 23 243211
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--ccceeecchhhh
Q 014017 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKY 297 (432)
Q Consensus 229 HcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aLD~-~Gf--~~v~ImSYSaKy 297 (432)
.+ |++.+.+.|-...++|||+|+-.||.=+ .|.++|+.++- -|| +|+.=|+-+.-.
T Consensus 151 ----------~~---~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~l 217 (593)
T PRK14040 151 ----------VH---TLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLL 217 (593)
T ss_pred ----------cc---CHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHH
Confidence 12 4666666666677899999999999753 56778877531 122 455555554444
Q ss_pred ccccchhhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC-----
Q 014017 298 ASSFYGPFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY----- 369 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~----- 369 (432)
+..--| =+.++.+-. +|-| +=|.+ -|.+..++. +.+-|-|+-.+....-|+.=|+..-+.|
T Consensus 218 aAieAG--a~~vD~ai~glG~~-~Gn~~--------le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y~~~~~~~~ 286 (593)
T PRK14040 218 KAIEAG--IDGVDTAISSMSMT-YGHSA--------TETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYAKFEGQLK 286 (593)
T ss_pred HHHHcC--CCEEEecccccccc-ccchh--------HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 433333 122333332 4443 33333 244444433 2344555544444444433333222222
Q ss_pred --CCCeEEEEechh-h-HHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe-ehh
Q 014017 370 --PLPIAAYQVSGE-Y-SMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTY 418 (432)
Q Consensus 370 --~lPvaaYqVSGE-Y-aMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I-iTY 418 (432)
+.=|--||+.|= | .+...+.+.|..|.=.-++|-+...++-.-++| +|=
T Consensus 287 ~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~~VTP 340 (593)
T PRK14040 287 GVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIPLVTP 340 (593)
T ss_pred cCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECC
Confidence 234678999988 4 455557888887754555555555555555553 443
No 93
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=80.17 E-value=18 Score=35.59 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHHHHHHhchhcCCcEEEE-----cCCCc----------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCC--Cch
Q 014017 333 REALVEAQADESEGADILLV-----KPGLP----------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK--MID 395 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMV-----KPal~----------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G--~id 395 (432)
.+++.++..-+++|||+|=| .|+.. -..+|+.+++.+++||..= |-....+++|.++| +|+
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~~vi~~al~~G~~iIN 100 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRAEVARAALEAGADIIN 100 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCHHHHHHHHHcCCCEEE
Confidence 88999999999999999999 46544 3466677888889998553 44566777777777 333
Q ss_pred hhHH--HHHHHHHHHHcCccEeehhc
Q 014017 396 EQRV--MMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 396 ~~~~--~~EsL~~ikRAGAd~IiTYf 419 (432)
.=.. .-|.+.-+++.|+.+|+.+.
T Consensus 101 sis~~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 101 DVSGGQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred ECCCCCCchhHHHHHHcCCcEEEEeC
Confidence 2111 22345558889999999764
No 94
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=79.99 E-value=4.3 Score=41.27 Aligned_cols=58 Identities=28% Similarity=0.402 Sum_probs=44.3
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
++-|+++.+ +++++++++.+.|++.|.|.+-..+.. +-.-+.+.++.||+.+|++.+.
T Consensus 74 ~~~y~l~~e-eI~~~a~~~~~~G~~~v~l~~G~~p~~----------~~~~~~e~i~~Ik~~~p~i~i~ 131 (351)
T TIGR03700 74 PGAYAMSLE-EIVARVKEAYAPGATEVHIVGGLHPNL----------PFEWYLDMIRTLKEAYPDLHVK 131 (351)
T ss_pred cccCCCCHH-HHHHHHHHHHHCCCcEEEEecCCCCCC----------CHHHHHHHHHHHHHHCCCceEE
Confidence 457788986 799999999999999999855322111 1135789999999999998765
No 95
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=79.94 E-value=26 Score=38.10 Aligned_cols=200 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCCCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHH---HCCCeEEEeeec
Q 014017 145 GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKD---RYPDLVIYTDVA 220 (432)
Q Consensus 145 ~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~---~fPdl~IitDVc 220 (432)
.+.|| .+++.+ +-++.++.+.++|++.|-+ ||. ...+| .++++.|.+ .-..+...+...
T Consensus 17 ~Q~~g-~~~s~e-~Kl~ia~~L~~~Gvd~IEvG~p~--as~~d-------------~~~~~~i~~~~l~~~~i~~~~~~~ 79 (524)
T PRK12344 17 AQGEG-ISFSVE-DKLRIARKLDELGVDYIEGGWPG--SNPKD-------------TEFFKRAKELKLKHAKLAAFGSTR 79 (524)
T ss_pred CcCCC-CCCCHH-HHHHHHHHHHHcCCCEEEEcCCc--CChhH-------------HHHHHHHHHhCCCCcEEEEEeecc
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCe----ecCCCCCCchHHHHHHHHHHCCCccceeecchhh
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADV----VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADi----VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaK 296 (432)
---+. ..||.+++.+ .++|+++ ++.||.. ++..|...-=..+..+-=+.|
T Consensus 80 ~~~i~-------------~~~d~~~e~~-------~~~g~~~i~i~~~~Sd~h------~~~~l~~s~~e~l~~~~~~v~ 133 (524)
T PRK12344 80 RAGVS-------------AEEDPNLQAL-------LDAGTPVVTIFGKSWDLH------VTEALRTTLEENLAMIRDSVA 133 (524)
T ss_pred ccCCC-------------cccHHHHHHH-------HhCCCCEEEEEECCCHHH------HHHHcCCCHHHHHHHHHHHHH
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhhCC
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKYP 370 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~~~ 370 (432)
|+-.+ .-+..-+++.+.| .|--| |.-.-|..+++. +.|||.|.++=-.=| -++|+.++++++
T Consensus 134 ~ak~~---G~~v~~~~e~~~D--a~r~d----~~~l~~~~~~~~---~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~~ 201 (524)
T PRK12344 134 YLKAH---GREVIFDAEHFFD--GYKAN----PEYALATLKAAA---EAGADWVVLCDTNGGTLPHEVAEIVAEVRAAPG 201 (524)
T ss_pred HHHHc---CCeEEEccccccc--cccCC----HHHHHHHHHHHH---hCCCCeEEEccCCCCcCHHHHHHHHHHHHHhcC
Q ss_pred CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 371 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 371 lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
+|+. +|- -=|.-=.+--+|.++ +||||.|
T Consensus 202 v~i~-~H~--------------HND~GlA~ANslaAi-~aGa~~V 230 (524)
T PRK12344 202 VPLG-IHA--------------HNDSGCAVANSLAAV-EAGARQV 230 (524)
T ss_pred CeEE-EEE--------------CCCCChHHHHHHHHH-HhCCCEE
No 96
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=79.56 E-value=8 Score=42.64 Aligned_cols=217 Identities=19% Similarity=0.133 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
-+.++++.+.+.|+..|-+|-.+.+ . --+.++++..|+.--.+.+.-..+.|||
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~------------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALND-P------------RNLQAAIQAAKKHGAHAQGTISYTTSPV------------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCc-H------------HHHHHHHHHHHHcCCEEEEEEEeccCCC-------------
Confidence 3667899999999999999854332 1 1267888988887533222111113443
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHH-CCC--ccceeecchhhhccccchhhh
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aLD~-~Gf--~~v~ImSYSaKyASsfYGPFR 306 (432)
.|++.+.+.+-...++|||.|+-.||.=. .|.+||+.++- -++ +|+.=|+-+.-.+..-.|-
T Consensus 146 -----~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa-- 218 (582)
T TIGR01108 146 -----HTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGA-- 218 (582)
T ss_pred -----CCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC--
Confidence 26677777777778899999999999753 56777776531 122 4555566555454444441
Q ss_pred hhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC----------CCCe
Q 014017 307 EALDSNPR-FGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY----------PLPI 373 (432)
Q Consensus 307 dAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~----------~lPv 373 (432)
+.++++-. +|-| +=|.+ -|.+..++. ..+-|-|+=-+... -+.++++++.+ +.=|
T Consensus 219 ~~vd~ai~GlG~~-tGn~~--------le~vv~~L~~~g~~tgid~~~L~~l---~~~~~~v~~~Y~~~~~~~~~~~~~v 286 (582)
T TIGR01108 219 DGIDTAISSMSGG-TSHPP--------TETMVAALRGTGYDTGLDIELLLEI---AAYFREVRKKYSQFEGQLKGPDSRI 286 (582)
T ss_pred CEEEecccccccc-ccChh--------HHHHHHHHHhcCCCcccCHHHHHHH---HHHHHHHHHHhhcCCCcccCCCccE
Confidence 22333322 3432 33333 243333332 12222222222222 22233343333 2346
Q ss_pred EEEEechh--hHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe-ehhc
Q 014017 374 AAYQVSGE--YSMIKAGGALKMIDEQRVMMESLMCLRRAGADII-LTYF 419 (432)
Q Consensus 374 aaYqVSGE--YaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I-iTYf 419 (432)
--||++|= =.+...+-+.|..|.=.-++|-+.-.++..-+.+ +|=+
T Consensus 287 ~~~e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~ 335 (582)
T TIGR01108 287 LVAQVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPT 335 (582)
T ss_pred EEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCc
Confidence 78999998 4455567888988765666666666666666666 5543
No 97
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=79.16 E-value=54 Score=33.16 Aligned_cols=124 Identities=23% Similarity=0.313 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCC-------------------CCchHHHHHHHHHH-CCCccceeecchhhhccc
Q 014017 241 NDETVHQLCKQAVSQARAGADVVSPSDM-------------------MDGRVGAIRAALDA-EGFQHVSIMSYTAKYASS 300 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVAPSDM-------------------MDGrV~aIR~aLD~-~Gf~~v~ImSYSaKyASs 300 (432)
|-..+.++++ .++++|+.-|-.-|- +|=++..||.+.+. .| .++.|++-+--|.+.
T Consensus 90 ~~~~v~r~V~---~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~-~~~~IiARTDa~~~~ 165 (285)
T TIGR02320 90 NFEHFRRLVR---KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT-EDFMIIARVESLILG 165 (285)
T ss_pred CHHHHHHHHH---HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC-CCeEEEEeccccccc
Confidence 5555555444 456799977776552 22246677777766 34 478888775432110
Q ss_pred cchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC-CchhHHHHHHHhhC-----CCCeE
Q 014017 301 FYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG-LPYLDVIRLLRDKY-----PLPIA 374 (432)
Q Consensus 301 fYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa-l~YLDII~~vk~~~-----~lPva 374 (432)
...+||++.+..=.+-|||+|+|- + ..-.|-|+++-+.+ ++|+.
T Consensus 166 -----------------------------~~~~eAi~Ra~ay~eAGAD~ifv~-~~~~~~~ei~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 166 -----------------------------KGMEDALKRAEAYAEAGADGIMIH-SRKKDPDEILEFARRFRNHYPRTPLV 215 (285)
T ss_pred -----------------------------CCHHHHHHHHHHHHHcCCCEEEec-CCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence 124799999999999999999994 3 34567777766655 46886
Q ss_pred EEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 375 AYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 375 aYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+ +.|+| +.+ ++..+..+|.+.|+.
T Consensus 216 ~--~~~~~---------~~~--------~~~eL~~lG~~~v~~ 239 (285)
T TIGR02320 216 I--VPTSY---------YTT--------PTDEFRDAGISVVIY 239 (285)
T ss_pred E--ecCCC---------CCC--------CHHHHHHcCCCEEEE
Confidence 3 33443 222 244566668877654
No 98
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=78.82 E-value=1.1e+02 Score=33.95 Aligned_cols=203 Identities=19% Similarity=0.188 Sum_probs=112.9
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014017 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (432)
Q Consensus 133 lFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd 212 (432)
++|+|-. -+.=.+.++..|++.+ +.+..++.+.+.|+.++=+.|- +.-|. +.-|-...+ -+.++.|++..|+
T Consensus 4 v~i~DtT-lRDG~Qs~~atr~~t~-d~l~ia~~l~~~G~~~iE~~gg---atfd~--~~rfl~edp-~e~l~~l~~~~~~ 75 (592)
T PRK09282 4 VKITDTT-LRDAHQSLLATRMRTE-DMLPIAEKLDKVGFWSLEVWGG---ATFDV--CIRYLNEDP-WERLRKLKKALPN 75 (592)
T ss_pred cEEEECC-CCccccccCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccchh--hcccCCccH-HHHHHHHHHhCCC
Confidence 5566532 1122345566688875 6899999999999999988652 11111 011222233 4578999999998
Q ss_pred eEEEeee---cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCc
Q 014017 213 LVIYTDV---ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQ 286 (432)
Q Consensus 213 l~IitDV---cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~ 286 (432)
..+.+=. .+..|+. --|..++...+.| +++|.|++--.|-+ +.-..+|+.+- ++|+.
T Consensus 76 ~~l~~l~Rg~N~~gy~~-------------ypd~vv~~~v~~A---~~~Gvd~irif~~lnd~~n~~~~i~~ak-~~G~~ 138 (592)
T PRK09282 76 TPLQMLLRGQNLVGYRH-------------YPDDVVEKFVEKA---AENGIDIFRIFDALNDVRNMEVAIKAAK-KAGAH 138 (592)
T ss_pred CEEEEEecccccccccc-------------ccchhhHHHHHHH---HHCCCCEEEEEEecChHHHHHHHHHHHH-HcCCE
Confidence 6554210 1122211 1234455555655 36799976544333 34444554443 56774
Q ss_pred cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc------hhH
Q 014017 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP------YLD 360 (432)
Q Consensus 287 ~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~------YLD 360 (432)
-..-++|+. +|+ | + +.-.-+-.+++ .+-|||.|-+|=-.= .-+
T Consensus 139 v~~~i~~t~-------~p~---------------~--t----~~~~~~~a~~l---~~~Gad~I~i~Dt~G~~~P~~~~~ 187 (592)
T PRK09282 139 VQGTISYTT-------SPV---------------H--T----IEKYVELAKEL---EEMGCDSICIKDMAGLLTPYAAYE 187 (592)
T ss_pred EEEEEEecc-------CCC---------------C--C----HHHHHHHHHHH---HHcCCCEEEECCcCCCcCHHHHHH
Confidence 444457753 121 1 2 22223333333 345999998874322 258
Q ss_pred HHHHHHhhCCCCeEEEEechh----hHHHHHHHHCC
Q 014017 361 VIRLLRDKYPLPIAAYQVSGE----YSMIKAGGALK 392 (432)
Q Consensus 361 II~~vk~~~~lPvaaYqVSGE----YaMikaAa~~G 392 (432)
+++.+|+++++|| .+|---. .+-..+|.++|
T Consensus 188 lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAv~aG 222 (592)
T PRK09282 188 LVKALKEEVDLPV-QLHSHCTSGLAPMTYLKAVEAG 222 (592)
T ss_pred HHHHHHHhCCCeE-EEEEcCCCCcHHHHHHHHHHhC
Confidence 9999999999987 4555322 23344466666
No 99
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=78.25 E-value=10 Score=41.08 Aligned_cols=135 Identities=14% Similarity=0.101 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhh-------hhCCCC-
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA-------LDSNPR- 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdA-------a~Sap~- 314 (432)
-|-+.+++++..++..|.|+|= |.+++.|- =|.||+|= ++.+-.
T Consensus 180 Lsp~~~A~~~y~~~~GGvD~IK----------------DDE~l~dq------------~~~p~~eRv~~~~~a~~~a~~e 231 (475)
T CHL00040 180 LSAKNYGRAVYECLRGGLDFTK----------------DDENVNSQ------------PFMRWRDRFLFCAEAIYKAQAE 231 (475)
T ss_pred CCHHHHHHHHHHHHcCCCcccc----------------cCccCCCC------------CCCCHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999873 34444222 23344321 111111
Q ss_pred CCCcccccccccCCC-CCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh---hCCCCeEEEE-echhhHHHHHHH
Q 014017 315 FGDKKTYVIRVIELY-ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMIKAGG 389 (432)
Q Consensus 315 ~gDRktYQmd~~~~p-~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~---~~~lPvaaYq-VSGEYaMikaAa 389 (432)
-|.|+.|-+| |- ....|.++.+..=.++|++.+||=|...=++.++.+++ ..++||-+-- .+|-|. ..-
T Consensus 232 TG~~~~y~~N---iTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~ga~~---r~~ 305 (475)
T CHL00040 232 TGEIKGHYLN---ATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVID---RQK 305 (475)
T ss_pred hCCcceeeec---cCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhcCceEEeccccccccc---cCc
Confidence 2778888887 23 26789999999889999999999998777999999985 5789986521 223221 111
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
..|+- . .++=. -+|=||||.|.
T Consensus 306 ~~Gis-~--~vl~K--L~RLaGaD~ih 327 (475)
T CHL00040 306 NHGIH-F--RVLAK--ALRMSGGDHIH 327 (475)
T ss_pred cCCCc-H--HHHHH--HHHHcCCCccc
Confidence 33442 2 22322 34669999984
No 100
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=78.23 E-value=30 Score=41.64 Aligned_cols=172 Identities=23% Similarity=0.237 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHHHHHHHcC-CCeecCCCCC-CchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC-CC-
Q 014017 241 NDETVHQLCKQAVSQARAG-ADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FG- 316 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AG-ADiVAPSDMM-DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~-~g- 316 (432)
-|.|-+.+++++..+++.| +.+|.=..=- --.|.+|+++|+..--..+. ...-...+|-|.|+.=--++.+- .|
T Consensus 287 yd~tPe~~a~~~~~~~~~G~v~IIGGCCGTtPeHI~ala~~l~~~~p~~~~--~~~~~~~~S~~~~~~~~~~~~~~~IGE 364 (1229)
T PRK09490 287 YDETPEEMAAQIGEFAESGFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLP--EIPVACRLSGLEPLNIDDDSLFVNVGE 364 (1229)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHHHhcCCCCCCC--CcCcceeeecceEEeecCCCccccccc
Confidence 3456788999999999999 8988643322 23899999999754332211 11111244555554322222221 13
Q ss_pred ------CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhH----------HHHHHHhhCCCCeEEEEech
Q 014017 317 ------DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLD----------VIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 317 ------DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLD----------II~~vk~~~~lPvaaYqVSG 380 (432)
.|+=.+. +.=.|..+|+..+..-+++|||+|=|=++.+.+| +|+.+++.+++|+..= |=
T Consensus 365 R~N~~G~k~~~~~---i~~~d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsID--S~ 439 (1229)
T PRK09490 365 RTNVTGSAKFARL---IKEEDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMID--SS 439 (1229)
T ss_pred ccchhccHHHHHH---HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEe--CC
Confidence 3322222 1246788999999999999999999999987754 3444444467887432 56
Q ss_pred hhHHHHHHHHC--C--Cch------hhHHHHHHHHHHHHcCccEeehhc
Q 014017 381 EYSMIKAGGAL--K--MID------EQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 381 EYaMikaAa~~--G--~id------~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
....+.+|.+. | +|| .+.-+.|.+.-+++-||.+|+..+
T Consensus 440 ~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 440 KWEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred cHHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 77788888775 2 222 122345677789999999999887
No 101
>PRK08508 biotin synthase; Provisional
Probab=78.21 E-value=23 Score=35.02 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=40.8
Q ss_pred Ccee-echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 149 GCYR-LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 149 Gv~r-~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
..|+ ++.+ ++++.++++.+.|++.+.+...-. ...+ ..-..+...++.||+.+|++.+.
T Consensus 35 ~~y~~~s~e-eI~~~a~~a~~~g~~~~~lv~sg~-~~~~-------~~~e~~~ei~~~ik~~~p~l~i~ 94 (279)
T PRK08508 35 KRYKRKDIE-QIVQEAKMAKANGALGFCLVTSGR-GLDD-------KKLEYVAEAAKAVKKEVPGLHLI 94 (279)
T ss_pred ccccCCCHH-HHHHHHHHHHHCCCCEEEEEeccC-CCCc-------ccHHHHHHHHHHHHhhCCCcEEE
Confidence 3466 5875 699999999999999998842101 0000 01135678999999999987654
No 102
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=78.19 E-value=7.7 Score=39.79 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC--------CCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSP--------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAP--------SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
-|.+.+++++..+|..|.|+|== -.=+.-||.+..++++++ .+.+
T Consensus 27 lsp~~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a-------------------------~~eT-- 79 (309)
T PF00016_consen 27 LSPEELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRA-------------------------EEET-- 79 (309)
T ss_dssp S-HHHHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHH-------------------------HHHH--
T ss_pred ecccchhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhcc-------------------------cccc--
Confidence 47788999999999999999841 111223444444444332 1112
Q ss_pred CCCcccccccccCCCC--CHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh---hCCCCeEEEEechhhHHHHHHH
Q 014017 315 FGDKKTYVIRVIELYA--NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~--N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~---~~~lPvaaYqVSGEYaMikaAa 389 (432)
|-|+-|-.| .. ...|.++.+..=++.|++.|||=+...=++.++.+++ ...+||- +|-.|-=++.. .-
T Consensus 80 -G~~~ly~~N----iT~~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~~~~~l~~~~~~~~~~ih-~H~A~~ga~~r-~~ 152 (309)
T PF00016_consen 80 -GEKKLYAAN----ITADTPDEMIERAEYAKEAGANAVMVNVLTAGFSALQSLAEDARDNGLPIH-AHRAGHGAFTR-SP 152 (309)
T ss_dssp -SS--EEEEE----E-SSSHHHHHHHHHHHHHHTGSEEEEEHHHHCHHHHHHHHHHHHHHTSEEE-EETTTHHHHHS-SS
T ss_pred -ceecceecc----cccccHHHHHHhhhhhhhhccchhhcccccccccccchhhhhhcccceeee-eccccchhhcc-cc
Confidence 778888888 42 3589999999999999999999765433666665553 3346653 35443222222 11
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
..|+ +. .++=. -+|=||||.|++
T Consensus 153 ~~Gi-s~--~vl~k--l~RLaGaD~vh~ 175 (309)
T PF00016_consen 153 DHGI-SF--RVLGK--LMRLAGADHVHF 175 (309)
T ss_dssp SSEE-HH--HHHHH--HHHHHT-SEEEE
T ss_pred cCcc-ce--eeecc--ceecceeeeecc
Confidence 2343 32 23333 346699999983
No 103
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=78.07 E-value=18 Score=31.85 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcE
Q 014017 271 GRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADI 349 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~ 349 (432)
+-+..+-+.+.+.|. .++.|.||.-... +......|.+ +-.|-.+ +..+...........|+|.
T Consensus 76 ~~~~~l~~~i~~~~~~~~v~i~s~~~~~l-------~~~~~~~p~~--~~~~~~~------~~~~~~~~~~~~~~~~~~~ 140 (189)
T cd08556 76 GLEAKVAELLREYGLEERVVVSSFDHEAL-------RALKELDPEV--PTGLLVD------KPPLDPLLAELARALGADA 140 (189)
T ss_pred hHHHHHHHHHHHcCCcCCEEEEeCCHHHH-------HHHHHhCCCC--cEEEEee------cCcccchhhhHHHhcCCeE
Confidence 446677778888875 7788888765322 1222223432 1112221 2222111113446779999
Q ss_pred EEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 350 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 350 lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+-+.=....-.+++.+++ .++++.+|.|-- .|.+.-+.+.|+|.|+|=
T Consensus 141 v~~~~~~~~~~~i~~~~~-~g~~v~~wtvn~--------------------~~~~~~~~~~GVdgI~TD 188 (189)
T cd08556 141 VNPHYKLLTPELVRAAHA-AGLKVYVWTVND--------------------PEDARRLLALGVDGIITD 188 (189)
T ss_pred EccChhhCCHHHHHHHHH-cCCEEEEEcCCC--------------------HHHHHHHHHCCCCEEecC
Confidence 988766677889999988 599999998832 345556677899999984
No 104
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=77.87 E-value=11 Score=37.79 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=86.2
Q ss_pred HHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc--ccccccccCCCC
Q 014017 253 VSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK--KTYVIRVIELYA 330 (432)
Q Consensus 253 vs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p~ 330 (432)
....+||+|+|.-.| + +++ -..|+.|+..++..--..-. .--+.++..+|-..|= -+|+.+ |
T Consensus 29 rl~e~aG~d~i~vGd---s-~~~-----~~lG~~Dt~~vtl~em~~h~--~~V~r~~~~p~vvaD~pfg~y~~~----~- 92 (264)
T PRK00311 29 KLFDEAGVDVILVGD---S-LGM-----VVLGYDSTLPVTLDDMIYHT--KAVARGAPRALVVADMPFGSYQAS----P- 92 (264)
T ss_pred HHHHHcCCCEEEECH---H-HHH-----HHcCCCCCCCcCHHHHHHHH--HHHHhcCCCCcEEEeCCCCCccCC----H-
Confidence 334566999998432 2 222 12677777666654321100 0012222222222221 256554 3
Q ss_pred CHHHHHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCeE--------EEEechhhHHHHHHHHCCCchh-hHHH
Q 014017 331 NYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIA--------AYQVSGEYSMIKAGGALKMIDE-QRVM 400 (432)
Q Consensus 331 N~~EAlre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPva--------aYqVSGEYaMikaAa~~G~id~-~~~~ 400 (432)
.++++.+.+=++ -||+.|-..=+.-..+.|+.+.+ -++||. .-+.-|.|.. .|--|+ -+-+
T Consensus 93 --~~av~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~-agIpV~gHiGL~pq~~~~~gg~~i------~grt~~~a~~~ 163 (264)
T PRK00311 93 --EQALRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVE-RGIPVMGHLGLTPQSVNVLGGYKV------QGRDEEAAEKL 163 (264)
T ss_pred --HHHHHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH-CCCCEeeeecccceeecccCCeee------ecCCHHHHHHH
Confidence 677888777777 69999999988777888998886 489986 1122233432 111111 2457
Q ss_pred HHHHHHHHHcCccEeehhc-HHHHHHHHh
Q 014017 401 MESLMCLRRAGADIILTYF-ALQAARCLC 428 (432)
Q Consensus 401 ~EsL~~ikRAGAd~IiTYf-A~~~a~wL~ 428 (432)
+|-..++..||||+|+-=- -.++++.+.
T Consensus 164 i~ra~a~~eAGA~~i~lE~v~~~~~~~i~ 192 (264)
T PRK00311 164 LEDAKALEEAGAFALVLECVPAELAKEIT 192 (264)
T ss_pred HHHHHHHHHCCCCEEEEcCCCHHHHHHHH
Confidence 8889999999999987422 224555544
No 105
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=77.84 E-value=11 Score=40.20 Aligned_cols=67 Identities=28% Similarity=0.442 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
-.+.++.+++.|+.-+.+ ...+ |. ..+ +...|+.||+++|++.|++ |.
T Consensus 229 ~~e~a~~L~~agvdvivv----D~a~----g~----~~~-vl~~i~~i~~~~p~~~vi~-------------------g~ 276 (486)
T PRK05567 229 NEERAEALVEAGVDVLVV----DTAH----GH----SEG-VLDRVREIKAKYPDVQIIA-------------------GN 276 (486)
T ss_pred hHHHHHHHHHhCCCEEEE----ECCC----Cc----chh-HHHHHHHHHhhCCCCCEEE-------------------ec
Confidence 468899999999994422 2111 11 122 5678999999999977774 22
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
|.+- +.|....++|||+|-
T Consensus 277 v~t~-------e~a~~l~~aGad~i~ 295 (486)
T PRK05567 277 VATA-------EAARALIEAGADAVK 295 (486)
T ss_pred cCCH-------HHHHHHHHcCCCEEE
Confidence 3333 345566689999996
No 106
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=77.68 E-value=18 Score=38.22 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
.+..+.++.+++.|+.-|.+=- .+ | .+ --+.+.|+.||++||++.|++
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~----a~----g---~~--~~~~~~i~~i~~~~~~~~vi~ 270 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDS----SH----G---HS--IYVIDSIKEIKKTYPDLDIIA 270 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEEC----CC----C---cH--hHHHHHHHHHHHhCCCCCEEE
Confidence 3568899999999999877621 11 1 11 136689999999999988886
No 107
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=77.51 E-value=12 Score=37.83 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=55.1
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCc-EEEE---cCC---CchhHHHHHHHhhC-CCCeEEEEechhhHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGAD-ILLV---KPG---LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD-~lMV---KPa---l~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaA 388 (432)
+.+.|.++ +....|.+++ =.+.|+. +.+| .|. .-|+|+++.+|+.+ ++.+.+| +..-+...+
T Consensus 64 ~~~~y~ls----~eeI~e~~~~---~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~---t~~ei~~~~ 133 (343)
T TIGR03551 64 DADAYLLS----LEEIAERAAE---AWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAF---SPMEVYYGA 133 (343)
T ss_pred CCCcccCC----HHHHHHHHHH---HHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEec---CHHHHHHHH
Confidence 44568888 6444444443 3445765 4444 332 24599999999986 5888777 223333445
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
...|.++ -|.|..+|.||.|.|.
T Consensus 134 ~~~g~~~-----~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 134 RNSGLSV-----EEALKRLKEAGLDSMP 156 (343)
T ss_pred HHcCCCH-----HHHHHHHHHhCccccc
Confidence 6678776 4778899999999876
No 108
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=77.47 E-value=3.5 Score=42.17 Aligned_cols=143 Identities=20% Similarity=0.260 Sum_probs=87.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
.+..+-+-+.|-..|++-=.+|.+. =..| .+.--+++ .-|+.||+.. ++=||.=+ -.||
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~-~~~g-g~~Rm~~p--~~I~aIk~~V-~iPVigk~------Righ---------- 85 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADI-RAAG-GVARMADP--KMIEEIMDAV-SIPVMAKA------RIGH---------- 85 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchH-hhcC-CeeecCCH--HHHHHHHHhC-CCCeEEee------hhhH----------
Confidence 5566677788888888744457542 2333 23333333 4566888886 66555211 1233
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcc
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRk 319 (432)
-+.|-.+.++|+|+|.=|+-.-- +| .|+. -+|+
T Consensus 86 ---------~~Ea~~L~~~GvDiID~Te~lrp--------ad------------------~~~~------------~~K~ 118 (293)
T PRK04180 86 ---------FVEAQILEALGVDYIDESEVLTP--------AD------------------EEYH------------IDKW 118 (293)
T ss_pred ---------HHHHHHHHHcCCCEEeccCCCCc--------hH------------------HHHH------------HHHH
Confidence 56677889999999954443222 11 1111 1233
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----------------------------C---------CCchhHH
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVK-----------------------------P---------GLPYLDV 361 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----------------------------P---------al~YLDI 361 (432)
.|..+++.=-+|..||++. ++||||||--| + ..+-+|+
T Consensus 119 ~f~~~fmad~~~l~EAlra----i~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~el 194 (293)
T PRK04180 119 DFTVPFVCGARNLGEALRR----IAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYEL 194 (293)
T ss_pred HcCCCEEccCCCHHHHHHH----HHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHH
Confidence 3322222227899999887 56999999999 1 3355799
Q ss_pred HHHHHhhCCCCeE
Q 014017 362 IRLLRDKYPLPIA 374 (432)
Q Consensus 362 I~~vk~~~~lPva 374 (432)
|+++++..++||.
T Consensus 195 L~ei~~~~~iPVV 207 (293)
T PRK04180 195 VKEVAELGRLPVV 207 (293)
T ss_pred HHHHHHhCCCCEE
Confidence 9999998899985
No 109
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=77.31 E-value=14 Score=37.26 Aligned_cols=57 Identities=28% Similarity=0.458 Sum_probs=40.4
Q ss_pred cCCcEEEE-------cCCC-------chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHc
Q 014017 345 EGADILLV-------KPGL-------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 410 (432)
Q Consensus 345 EGAD~lMV-------KPal-------~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRA 410 (432)
-|||+|.+ +++. .|.++++.+++..++||.+...-+ + + -+.|....+..+
T Consensus 126 agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~------------~-~---~~~~~a~~l~~~ 189 (334)
T PRK07565 126 AGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY------------F-S---NLANMAKRLDAA 189 (334)
T ss_pred cCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC------------c-h---hHHHHHHHHHHc
Confidence 47888877 2222 378999999999999999996521 1 1 134556677889
Q ss_pred CccEeeh
Q 014017 411 GADIILT 417 (432)
Q Consensus 411 GAd~IiT 417 (432)
|+|.|+.
T Consensus 190 G~dgI~~ 196 (334)
T PRK07565 190 GADGLVL 196 (334)
T ss_pred CCCeEEE
Confidence 9998753
No 110
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=77.11 E-value=8.7 Score=41.52 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhh-------hhhCCCC-
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd-------Aa~Sap~- 314 (432)
-|-+.+++++..++..|.|+|= |.+++.|-. |.||++ |++.+-+
T Consensus 173 Lsp~~~a~~~y~~~~GGvD~IK----------------DDE~l~~q~------------f~p~~~Rv~~~~~a~~~a~~e 224 (468)
T PRK04208 173 LSAKNYGRVVYEALRGGLDFTK----------------DDENLNSQP------------FNRWRDRFLFVMEAIDKAEAE 224 (468)
T ss_pred CCHHHHHHHHHHHHhcCCceee----------------CCCCCCCCC------------CccHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999973 334442222 233332 1111111
Q ss_pred CCCcccccccccCCCCC-HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh---hCCCCeEEEE-echhhHHHHHHH
Q 014017 315 FGDKKTYVIRVIELYAN-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMIKAGG 389 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N-~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~---~~~lPvaaYq-VSGEYaMikaAa 389 (432)
-|.+|-|-+| |-+. ..|.++.+..=+++|++++||=|...=++.++.+++ .+++||-+-- .+|-|. ..-
T Consensus 225 TG~~k~y~~N---iT~~~~~em~~ra~~~~e~G~~~~mv~~~~~G~~~l~~l~~~~~~~~l~IhaHrA~~ga~~---r~~ 298 (468)
T PRK04208 225 TGERKGHYLN---VTAPTMEEMYKRAEFAKELGSPIVMIDVVTAGWTALQSLREWCRDNGLALHAHRAMHAAFT---RNP 298 (468)
T ss_pred hCCcceEEEe---cCCCCHHHHHHHHHHHHHhCCCEEEEeccccccHHHHHHHHhhhcCCcEEEecCCcccccc---cCc
Confidence 2777888887 2344 688888888888999999999999888999999997 4589985421 122211 111
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+.|+ +. .++= +-+|-||||.|++
T Consensus 299 ~~Gi-s~--~vl~--Kl~RLaGaD~ih~ 321 (468)
T PRK04208 299 NHGI-SF--RVLA--KLLRLIGVDHLHT 321 (468)
T ss_pred CCCC-CH--HHHH--HHHHHcCCCcccc
Confidence 2343 22 2222 2356699999986
No 111
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=77.10 E-value=11 Score=37.79 Aligned_cols=84 Identities=25% Similarity=0.320 Sum_probs=52.4
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----cCCC---chhHHHHHHHhhC-CCCeEEEEechhhHHHHHHH
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLV----KPGL---PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----KPal---~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa 389 (432)
.+.|-++ + +|.+.++..=.+.|+.-+-+ -|.. .|.++++.+|+++ ++.+-+ ...+|-..+. .
T Consensus 67 ~~~~~ls----~---eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~-~s~~ei~~~~--~ 136 (340)
T TIGR03699 67 PEGYVLS----V---EEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHS-FSPVEIVYIA--K 136 (340)
T ss_pred ccccCCC----H---HHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCC-CCHHHHHHHh--c
Confidence 3456777 5 44444444334568754444 3322 3578999999987 577666 3455543333 3
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+|+.+ -|.+..+|+||.|.+-
T Consensus 137 ~~g~~~-----~e~l~~Lk~aG~~~~~ 158 (340)
T TIGR03699 137 KEGLSL-----REVLERLKEAGLDSIP 158 (340)
T ss_pred cCCCCH-----HHHHHHHHHcCCCcCC
Confidence 567764 4788899999999765
No 112
>PRK07360 FO synthase subunit 2; Reviewed
Probab=76.85 E-value=5 Score=41.25 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=43.4
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
.-|+++.+ ++++.++++.+.|++.|.|.|-..+.. .+-..+.+.++.||+.||++.|.
T Consensus 87 ~~y~ls~e-eI~~~a~~a~~~G~~~i~l~~G~~p~~---------~~~e~~~~~i~~ik~~~~~i~i~ 144 (371)
T PRK07360 87 GAFWLTIA-EILEKAAEAVKRGATEVCIQGGLHPAA---------DSLEFYLEILEAIKEEFPDIHLH 144 (371)
T ss_pred CCeeCCHH-HHHHHHHHHHhCCCCEEEEccCCCCCC---------CcHHHHHHHHHHHHHhCCCccee
Confidence 45678986 699999999999999999965311111 12345779999999999987654
No 113
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=76.79 E-value=4.7 Score=40.52 Aligned_cols=156 Identities=21% Similarity=0.319 Sum_probs=88.6
Q ss_pred hHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
..++.+.++++ .|..+|-|=| | .-+...|+.+.+. .+-|+.=+-|-|=+.+=--|....
T Consensus 93 ~a~~na~rl~~eaGa~aVkiEg----------g-------~~~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~q- 152 (263)
T TIGR00222 93 QALKNAARVMQETGANAVKLEG----------G-------EWLVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQ- 152 (263)
T ss_pred HHHHHHHHHHHHhCCeEEEEcC----------c-------HhHHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeec-
Confidence 56666777666 7777776632 1 1123344555443 233443333333332211112211
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecc-hhhhccccchhhhhhhhCC---
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGPFREALDSN--- 312 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY-SaKyASsfYGPFRdAa~Sa--- 312 (432)
| .+++..+.+.+.|..+.+||||.|-...+=.--...|.+.| .+++... |.++++.=.=-|-|.++-.
T Consensus 153 g--rt~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l------~iP~iGIGaG~~~dGQvlV~~D~lG~~~~~ 224 (263)
T TIGR00222 153 G--KDEEAAKKLLEDALALEEAGAQLLVLECVPVELAAKITEAL------AIPVIGIGAGNVCDGQILVMHDALGITVGH 224 (263)
T ss_pred C--CCHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhC------CCCEEeeccCCCCCceeeeHHhhcCCCCCC
Confidence 2 34667789999999999999999988877744444454444 3677766 4567776666666777654
Q ss_pred -CCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 313 -PRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 313 -p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
|+|- |.|--- -....+|+++-..|+.+|.
T Consensus 225 ~pkf~--k~y~~~----~~~~~~a~~~y~~~V~~g~ 254 (263)
T TIGR00222 225 IPKFA--KNYLAE----TETIRAAVRQYMAEVRSGV 254 (263)
T ss_pred CCCch--HHHhhH----HHHHHHHHHHHHHHHhCCC
Confidence 4442 233222 2333566666666776664
No 114
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=76.72 E-value=7.4 Score=36.69 Aligned_cols=91 Identities=26% Similarity=0.370 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeE-EEEec---hh--------hHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIA-AYQVS---GE--------YSMIKAGG 389 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPva-aYqVS---GE--------YaMikaAa 389 (432)
..+..|.+.++..=..+|||+|=+-=.+.= .+.++.+++.+++|+. .|.-. |. +.+++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 85 (224)
T PF01487_consen 6 GSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAI 85 (224)
T ss_dssp -SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHH
Confidence 445666656555444449999988766433 4677788888899975 44433 33 37889999
Q ss_pred HCC--CchhhHH-HHH---HHHHHHHcCccEeehhc
Q 014017 390 ALK--MIDEQRV-MME---SLMCLRRAGADIILTYF 419 (432)
Q Consensus 390 ~~G--~id~~~~-~~E---sL~~ikRAGAd~IiTYf 419 (432)
+.| |+|-+-- .-| .....++.|..+|++|+
T Consensus 86 ~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H 121 (224)
T PF01487_consen 86 RLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYH 121 (224)
T ss_dssp HHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEec
Confidence 998 5665433 222 26678889999999999
No 115
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=76.27 E-value=1.1e+02 Score=36.84 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=129.0
Q ss_pred hhHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--------CeEEEeeecccCCC
Q 014017 157 HGLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--------DLVIYTDVALDPYS 225 (432)
Q Consensus 157 ~~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP--------dl~IitDVcLc~YT 225 (432)
.++++.+.+ -++.|-.-|.- |+.-+..+++ .|-+ ..-..+...|+++.|+... +..|..+ +.||+
T Consensus 49 Pe~I~~IH~~Yl~AGAdII~TNTF~a~~~~L~~-yg~~-~~~~eln~~av~lAr~Aa~~~~~~~~~~~~VAGs--IGP~g 124 (1178)
T TIGR02082 49 PEVIATIHRAYFEAGADIIETNTFNSTTISQAD-YDLE-DLIYDLNFKGAKLARAVADEFTLTPEKPRFVAGS--MGPTN 124 (1178)
T ss_pred HHHHHHHHHHHHHHhchheecCCccCCHHHHhh-CCHH-HHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEE--eCCCC
Confidence 457777775 57888663332 7642211111 1110 0112334567777775542 3567666 55776
Q ss_pred CCCcce--eecC-CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-----HHHHHHHHHHCCCccceeecchhhh
Q 014017 226 SDGHDG--IVRE-DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-----VGAIRAALDAEGFQHVSIMSYTAKY 297 (432)
Q Consensus 226 shGHcG--Il~~-~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGr-----V~aIR~aLD~~Gf~~v~ImSYSaKy 297 (432)
..-..| .-+. -+.+.-|+-.+...+|+-.+.++|+|++.---|.|-. +.++|+.+.+.| .+++||---
T Consensus 125 ~~~~lgp~~~~~~~~~~t~del~~~y~eq~~~L~~~GvD~iliETi~d~~EakAal~a~~~~~~~~~-~~lPv~vS~--- 200 (1178)
T TIGR02082 125 KTATLSPDVERPGFRNVTYDELVDAYTEQAKGLLDGGVDLLLIETCFDTLNAKAALFAAETVFEEKG-RELPIMISG--- 200 (1178)
T ss_pred CCccCCCccccCccCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHHHhhcC-CCCeEEEEE---
Confidence 432222 1110 0246678888899999999999999999999999943 444555554445 356665220
Q ss_pred ccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC---chhHHHHHHHhhCCCCeE
Q 014017 298 ASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL---PYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal---~YLDII~~vk~~~~lPva 374 (432)
.++. .- | .-++ -.+...++ ++.. ..|+|.|.+==++ .-+.+|+.+.+..+.|+.
T Consensus 201 --~~~d----~~------G----r~~~----G~~~~~~~-~~l~--~~~~~avGlNCs~gP~~m~~~l~~l~~~~~~pi~ 257 (1178)
T TIGR02082 201 --TIVD----TS------G----RTLS----GQTIEAFL-TSLE--HAGIDMIGLNCALGPDEMRPHLKHLSEHAEAYVS 257 (1178)
T ss_pred --EEEC----CC------C----eeCC----CCcHHHHH-HHHh--cCCCCEEEeCCCCCHHHHHHHHHHHHHhcCceEE
Confidence 1111 00 1 1122 22334444 4332 5799999987774 347788888888899999
Q ss_pred EEEechhhHHHHHHHHCCCchh-hHHHHHHHHHHHHc-CccEe
Q 014017 375 AYQVSGEYSMIKAGGALKMIDE-QRVMMESLMCLRRA-GADII 415 (432)
Q Consensus 375 aYqVSGEYaMikaAa~~G~id~-~~~~~EsL~~ikRA-GAd~I 415 (432)
+|-=+|.=. ..|.+|+ ...+-+.+..+..+ |+.+|
T Consensus 258 vyPNAGlP~------~~~~yd~~p~~~a~~~~~~~~~ggv~II 294 (1178)
T TIGR02082 258 CHPNAGLPN------AFGEYDLTPDELAKALADFAAEGGLNIV 294 (1178)
T ss_pred EEeCCCCCC------CCCcccCCHHHHHHHHHHHHHhCCCcEE
Confidence 998888511 0234443 24567778888887 58776
No 116
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=75.78 E-value=73 Score=30.10 Aligned_cols=187 Identities=21% Similarity=0.217 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.++.++.+.+.|+..+++... . .+..+. |+-...++.|.+..+ +-|+ + +|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl-~---~~~~~~------~~n~~~~~~i~~~~~-~pv~----------------~--~g 81 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDI-D---ASKRGR------EPLFELISNLAEECF-MPLT----------------V--GG 81 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeC-C---CcccCC------CCCHHHHHHHHHhCC-CCEE----------------E--EC
Confidence 4788888999999999999774 2 222222 344567777777642 1122 2 36
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchh-hhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP-FREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP-FRdAa~Sap~~g 316 (432)
.|.+-+.++.+.+ +|||.|-=....--....++++.+..|- +..++|.-.| -...++ ++ .+.+ |
T Consensus 82 gi~~~~d~~~~~~-------~G~~~vilg~~~l~~~~~~~~~~~~~~~-~~i~vsld~~--~~~~~~~~~-v~~~----~ 146 (232)
T TIGR03572 82 GIRSLEDAKKLLS-------LGADKVSINTAALENPDLIEEAARRFGS-QCVVVSIDVK--KELDGSDYK-VYSD----N 146 (232)
T ss_pred CCCCHHHHHHHHH-------cCCCEEEEChhHhcCHHHHHHHHHHcCC-ceEEEEEEec--cCCCCCcEE-EEEC----C
Confidence 6666666665433 5888654332222224566667665542 2233444333 221111 11 1111 1
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcC-------CCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKP-------GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKP-------al~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa 389 (432)
-.+.- ..+..+..++. .+.|+|.|.+-. ..+.+++++++++..++||.+
T Consensus 147 ~~~~~-------~~~~~~~~~~~---~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia-------------- 202 (232)
T TIGR03572 147 GRRAT-------GRDPVEWAREA---EQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIA-------------- 202 (232)
T ss_pred CcccC-------CCCHHHHHHHH---HHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEE--------------
Confidence 11111 12233444444 367999888765 235699999999999999876
Q ss_pred HCCCchhhHHHHHHHHH-HHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMC-LRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~-ikRAGAd~IiT 417 (432)
.|.+.. .|-+.. ++++|||.|+-
T Consensus 203 -~GGi~s----~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 203 -LGGAGS----LDDLVEVALEAGASAVAA 226 (232)
T ss_pred -ECCCCC----HHHHHHHHHHcCCCEEEE
Confidence 455543 233333 77789998863
No 117
>PRK09234 fbiC FO synthase; Reviewed
Probab=75.72 E-value=5.9 Score=45.54 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=46.0
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
++.|+++.+ ++++.++++.+.|++.|.+-|-+.++ ++ -..+.+.++.||+++|++.|.+
T Consensus 552 ~~~y~Ls~e-eI~~~a~ea~~~G~tev~i~gG~~p~---------~~-~~~y~~lir~IK~~~p~i~i~a 610 (843)
T PRK09234 552 ADAYTLSLD-EVADRAWEAWVAGATEVCMQGGIHPE---------LP-GTGYADLVRAVKARVPSMHVHA 610 (843)
T ss_pred CCcccCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------cC-HHHHHHHHHHHHHhCCCeeEEe
Confidence 468889986 69999999999999999996643221 11 1256789999999999988853
No 118
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=75.67 E-value=33 Score=37.48 Aligned_cols=182 Identities=19% Similarity=0.119 Sum_probs=101.8
Q ss_pred ecccCCCCCCcc---eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCCCCc--hHH-HHHHHHHHCCCccce
Q 014017 219 VALDPYSSDGHD---GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDMMDG--RVG-AIRAALDAEGFQHVS 289 (432)
Q Consensus 219 VcLc~YTshGHc---GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA---PSDMMDG--rV~-aIR~aLD~~Gf~~v~ 289 (432)
..+|...--+|. =|+ +.|.+-..++.+.++|..+.++|||||= .|. -+| ||. +|+...+..+. -++
T Consensus 138 ~~i~~~~i~~~~p~~~v~---aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st-~p~~~~v~~~V~~l~~~~~~-pIS 212 (499)
T TIGR00284 138 FRIGSLKIPLKPPPLRVV---AEIPPTVAEDGIEGLAARMERDGADMVALGTGSF-DDDPDVVKEKVKTALDALDS-PVI 212 (499)
T ss_pred hhccCcCCCCCCCCeEEE---EEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcC-CCcHHHHHHHHHHHHhhCCC-cEE
Confidence 345566666664 144 4676667778899999999999999983 333 123 233 33333322243 578
Q ss_pred eecchhhhcc-cc-chhhhhhhhCCCCCC-C-----cccccccccCCCCCH----HHHHHHHHhchhcCCcEEEEcCCCc
Q 014017 290 IMSYTAKYAS-SF-YGPFREALDSNPRFG-D-----KKTYVIRVIELYANY----REALVEAQADESEGADILLVKPGLP 357 (432)
Q Consensus 290 ImSYSaKyAS-sf-YGPFRdAa~Sap~~g-D-----RktYQmd~~~~p~N~----~EAlre~~~Di~EGAD~lMVKPal~ 357 (432)
|=||.++.+- +. +| .+-+.|--.+. | -+.|...+|.+|.|. +...+.+..=.+.|-+=|++=|++-
T Consensus 213 IDT~~~~v~eaAL~aG--AdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~IIlDPglg 290 (499)
T TIGR00284 213 ADTPTLDELYEALKAG--ASGVIMPDVENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVAADPSLS 290 (499)
T ss_pred EeCCCHHHHHHHHHcC--CCEEEECCccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEEEeCCCC
Confidence 8888777542 11 13 23333321111 1 134666777777552 2222222222345666689999887
Q ss_pred h--------hHHHHHHHhhCCCCe--EEEEechhhHHHHHHHHCCCchhhHHHHHHH--HHHHHcCccEeehhc
Q 014017 358 Y--------LDVIRLLRDKYPLPI--AAYQVSGEYSMIKAGGALKMIDEQRVMMESL--MCLRRAGADIILTYF 419 (432)
Q Consensus 358 Y--------LDII~~vk~~~~lPv--aaYqVSGEYaMikaAa~~G~id~~~~~~EsL--~~ikRAGAd~IiTYf 419 (432)
. |+-++.+|+++++|+ ++-+|++ ..|.++.-.-.+ ......||++|.|.=
T Consensus 291 ~~~~~l~~sL~~l~~~r~~~~~Pil~GvSNvte------------l~daDs~g~naal~~~a~e~Ga~ilrvhd 352 (499)
T TIGR00284 291 PPLLGLLESIIRFRRASRLLNVPLVFGAANVTE------------LVDADSHGVNALLAAIALEAGASILYVVE 352 (499)
T ss_pred cchHHHHHHHHHHHHHHHhcCCcEEEeeccccC------------CCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence 5 334445556788886 6556653 223333322222 234567999999887
No 119
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=75.58 E-value=31 Score=33.60 Aligned_cols=87 Identities=22% Similarity=0.196 Sum_probs=61.2
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCc---------------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCC--C
Q 014017 331 NYREALVEAQADESEGADILLVKPGLP---------------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALK--M 393 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~---------------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G--~ 393 (432)
+.++++..+..-+++|||||=|=...+ ...+|+.+++.+++||..= |-....+++|.+.| +
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSID--T~~~~v~~aaL~~g~~i 99 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVD--TFNAEVAEAALKAGADI 99 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCcHHHHHHHHHhCCCE
Confidence 458999999999999999998865444 6788889988888997432 55567888888876 2
Q ss_pred chhhHHH---HHHHHHHHHcCccEeehhc
Q 014017 394 IDEQRVM---MESLMCLRRAGADIILTYF 419 (432)
Q Consensus 394 id~~~~~---~EsL~~ikRAGAd~IiTYf 419 (432)
|+.=... -|.+.-+++.|+-+|+...
T Consensus 100 INdis~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 100 INDVSGGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EEeCCCCCCChHHHHHHHHcCCCEEEECc
Confidence 2210000 2334456778999999763
No 120
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=74.95 E-value=1.5 Score=42.73 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=62.5
Q ss_pred cCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC----
Q 014017 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADVVSPS---- 266 (432)
Q Consensus 193 ~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGI--l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS---- 266 (432)
.+.++.+.+|-++.+.--|+++|= -|-|..|---+ +...| |.--.|+=--..||+.-|+|||+.|||=
T Consensus 64 ~~~~~mi~eA~~l~~~~~~nv~VK-----IP~T~~Gl~Ai~~L~~~G-i~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi 137 (222)
T PRK12656 64 QDYEGILKDAHEIRRQCGDDVYIK-----VPVTPAGLAAIKTLKAEG-YHITATAIYTVFQGLLAIEAGADYLAPYYNRM 137 (222)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEE-----eCCCHHHHHHHHHHHHCC-CceEEeeeCCHHHHHHHHHCCCCEEecccchh
Confidence 455688888877654444677771 27776653332 32334 4445666666789999999999999992
Q ss_pred -CC-CCc--hHHHHHHHHHHCCCccceeecch
Q 014017 267 -DM-MDG--RVGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 267 -DM-MDG--rV~aIR~aLD~~Gf~~v~ImSYS 294 (432)
|+ .|| .|..|++.++..|+ ++-||+=|
T Consensus 138 ~d~g~D~~~~i~~i~~~~~~~~~-~tkILaAS 168 (222)
T PRK12656 138 ENLNIDSNAVIGQLAEAIDRENS-DSKILAAS 168 (222)
T ss_pred hhcCCCHHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 11 233 47778888888876 57777543
No 121
>PRK08445 hypothetical protein; Provisional
Probab=73.93 E-value=9.6 Score=39.10 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=45.7
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
-++-|.++.+ ++++.++++.+.|.+.|.+-|-.++. + +-..+.+.++.||+++|++.+.+
T Consensus 67 ~~~~y~l~~e-eI~~~~~~a~~~g~~~i~~~gg~~~~---------~-~~e~~~~l~~~Ik~~~p~i~~~a 126 (348)
T PRK08445 67 EDDAYILSFE-EIDKKIEELLAIGGTQILFQGGVHPK---------L-KIEWYENLVSHIAQKYPTITIHG 126 (348)
T ss_pred CCCCeeCCHH-HHHHHHHHHHHcCCCEEEEecCCCCC---------C-CHHHHHHHHHHHHHHCCCcEEEE
Confidence 4577888986 79999999999999999886522221 1 12346789999999999998864
No 122
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=73.73 E-value=11 Score=40.81 Aligned_cols=258 Identities=17% Similarity=0.169 Sum_probs=137.5
Q ss_pred CCCCCCChhhHhh-hccCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC
Q 014017 106 PRRNRKSPAMRAS-FQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL 184 (432)
Q Consensus 106 ~RRlR~~~~~R~l-~~Et~Ls~~~LI~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~ 184 (432)
.|-++-+||-|=- +++.- ++-.++=|+. |.+ .=|...|+ |+-+..+++.+.+.||.-+-+|=
T Consensus 64 ~rfl~edpwerlr~~r~~~--~nt~lqmLlR--G~n------~vgy~~yp-ddvv~~fv~~a~~~Gidi~Rifd------ 126 (468)
T PRK12581 64 IRFLNEDPWERLRTLKKGL--PNTRLQMLLR--GQN------LLGYRHYA-DDIVDKFISLSAQNGIDVFRIFD------ 126 (468)
T ss_pred hcccCCCHHHHHHHHHHhC--CCCceeeeec--ccc------ccCccCCc-chHHHHHHHHHHHCCCCEEEEcc------
Confidence 5667777775511 33322 3333443333 543 33444444 33356678899999999988874
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 185 Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
++|+-.-+.++|+.+|+..-... +|+| ||.. -..|++.+.++|-...++|||.|+
T Consensus 127 -------~lnd~~n~~~ai~~ak~~G~~~~----~~i~-yt~s-------------p~~t~~y~~~~a~~l~~~Gad~I~ 181 (468)
T PRK12581 127 -------ALNDPRNIQQALRAVKKTGKEAQ----LCIA-YTTS-------------PVHTLNYYLSLVKELVEMGADSIC 181 (468)
T ss_pred -------cCCCHHHHHHHHHHHHHcCCEEE----EEEE-EEeC-------------CcCcHHHHHHHHHHHHHcCCCEEE
Confidence 35555667889999998754322 3454 4331 122777788888888899999999
Q ss_pred CCCCCC--------chHHHHHHHHHH-CCC--ccceeecchhhhccccchhhhhhhhCCC-CCCCcccccccccCCCCCH
Q 014017 265 PSDMMD--------GRVGAIRAALDA-EGF--QHVSIMSYTAKYASSFYGPFREALDSNP-RFGDKKTYVIRVIELYANY 332 (432)
Q Consensus 265 PSDMMD--------GrV~aIR~aLD~-~Gf--~~v~ImSYSaKyASsfYGPFRdAa~Sap-~~gDRktYQmd~~~~p~N~ 332 (432)
-.||.= =.|.+||+..+- -|| +|+.=|+.+.-.+..--|- +.++++- .||.+.+ |.+
T Consensus 182 IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGa--d~vD~ai~g~g~gag-N~~-------- 250 (468)
T PRK12581 182 IKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGA--DRIDTALSPFSEGTS-QPA-------- 250 (468)
T ss_pred ECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCC--CEEEeeccccCCCcC-Chh--------
Confidence 999864 245566654321 012 3444466554444333331 2233332 3555544 443
Q ss_pred HHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC-------------CCCeEEEEec-hhhHHHH-HHHHCCCch
Q 014017 333 REALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY-------------PLPIAAYQVS-GEYSMIK-AGGALKMID 395 (432)
Q Consensus 333 ~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~-------------~lPvaaYqVS-GEYaMik-aAa~~G~id 395 (432)
-|.+..+.. +.+-|-|+-.+.....| ++++++.+ +.=|--||+= |-|+=++ .+.++|..|
T Consensus 251 tE~lv~~L~~~g~~tgiDl~~L~~~a~~---~~~vr~~y~~~~~~~~~~~~~d~~v~~hqiPGGm~snl~~Ql~~~g~~d 327 (468)
T PRK12581 251 TESMYLALKEAGYDITLDETLLEQAANH---LRQARQKYLADGILDPSLLFPDPRTLQYQVPGGMLSNMLSQLKQANAES 327 (468)
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHH---HHHHHHHhcccccCCCccCCCCcceeeCCCCcchHHHHHHHHHHCCcHh
Confidence 344443332 44445555444443333 33443332 2224455653 4565444 377888887
Q ss_pred hhHHHHHHHHHHHHcCccE-eehhc
Q 014017 396 EQRVMMESLMCLRRAGADI-ILTYF 419 (432)
Q Consensus 396 ~~~~~~EsL~~ikRAGAd~-IiTYf 419 (432)
.=.-++|-.-..++..-+. .+|=+
T Consensus 328 r~~ev~~e~~~V~~~lG~p~~VTP~ 352 (468)
T PRK12581 328 KLEEVLAEVPRVRKDLGYPPLVTPL 352 (468)
T ss_pred hHHHHHHHHHHHHHHcCCCCEECCh
Confidence 5444444444444333333 34433
No 123
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=73.65 E-value=24 Score=32.93 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-------CCCchhHHHHHHHhhCCCCeEE
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-------PGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~YLDII~~vk~~~~lPvaa 375 (432)
|+|.+|-.. ..+..|..++.. +.|+|.|-|= .....+|+|+++++..++|+.+
T Consensus 19 G~~~~~~~~----~~dp~~~a~~~~---~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~ 78 (234)
T cd04732 19 GDYDKKTVY----SDDPVEVAKKWE---EAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQV 78 (234)
T ss_pred ccCCCCeEE----CCCHHHHHHHHH---HcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 667666333 456666555544 3799988773 3455799999999999998653
No 124
>PLN02877 alpha-amylase/limit dextrinase
Probab=73.52 E-value=58 Score=38.52 Aligned_cols=155 Identities=22% Similarity=0.249 Sum_probs=89.3
Q ss_pred CCceeeEEEeeCCC-Cccc-CCCCCceeechh--hhHHHHHHHHHHcCCCeEEEeec-----CCCCC-------------
Q 014017 127 ANFVYPLFIHEGEE-DTPI-GAMPGCYRLGWR--HGLVQEVAKARDVGVNSVVLFPK-----VPDAL------------- 184 (432)
Q Consensus 127 ~~LI~PlFV~eg~~-~~~I-~sMPGv~r~si~--~~l~~~v~~~~~~GI~sv~LFgv-----i~~~~------------- 184 (432)
+-.||=+.|.+=.. +..+ ....|-|.==.+ ...++.+++|.++||++|-|-|+ |++..
T Consensus 339 D~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~ 418 (970)
T PLN02877 339 DISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEK 418 (970)
T ss_pred ccEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhcc
Confidence 45778888876442 2211 235565431111 12577899999999999999664 22100
Q ss_pred -----------------C-------------CcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014017 185 -----------------K-------------SPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 185 -----------------K-------------d~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGH 229 (432)
. -+.||++-|++|+. .+.|+.+.++ .|-||-||-.-+....|.
T Consensus 419 ~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEgSYatdP~g~~RI~efk~mV~~lH~~--GI~VImDVVyNHt~~~g~ 496 (970)
T PLN02877 419 LPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKGSYASNPDGPCRIIEFRKMVQALNRI--GLRVVLDVVYNHLHSSGP 496 (970)
T ss_pred ccccchhhhhcccccccCCCCCCCCCccccCCCCcccccCCCCcchHHHHHHHHHHHHHC--CCEEEEEECCccccCCCC
Confidence 0 14577777787763 2233333222 599999998776655554
Q ss_pred ce---ee-----------cCCCcccc-----------HHHHHHHHHHHHHHHH-cCCC---eecCCCCCCchHHHHHHHH
Q 014017 230 DG---IV-----------REDGVIMN-----------DETVHQLCKQAVSQAR-AGAD---VVSPSDMMDGRVGAIRAAL 280 (432)
Q Consensus 230 cG---Il-----------~~~g~IdN-----------D~Tl~~Lak~Avs~A~-AGAD---iVAPSDMMDGrV~aIR~aL 280 (432)
.+ .+ +.+|.+.| ...-+.+.....-.++ -|.| +=+-..+++..+..||++|
T Consensus 497 ~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L 576 (970)
T PLN02877 497 FDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRTMVRAKDAL 576 (970)
T ss_pred cchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHHHHHHHHHH
Confidence 33 11 12343322 2223444555555553 5555 4456667778889999999
Q ss_pred HHC
Q 014017 281 DAE 283 (432)
Q Consensus 281 D~~ 283 (432)
++-
T Consensus 577 ~~i 579 (970)
T PLN02877 577 QSL 579 (970)
T ss_pred HHH
Confidence 885
No 125
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=73.50 E-value=15 Score=29.05 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=50.1
Q ss_pred CCCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 328 LYANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 328 ~p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
...|..||+.... +...|++++- |...-+++++.++... ..|+..+.-..+......+.+.|..
T Consensus 28 ~~~~~~~~~~~~~---~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~ 95 (112)
T PF00072_consen 28 TASSGEEALELLK---KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGAD 95 (112)
T ss_dssp EESSHHHHHHHHH---HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTES
T ss_pred EECCHHHHHHHhc---ccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCC
Confidence 4678888887774 4449999998 8899999999999877 7999999877766666665555543
No 126
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=73.41 E-value=32 Score=32.32 Aligned_cols=89 Identities=25% Similarity=0.417 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.+.+.++.+.+.|+..|++ +. .-.++.+|+.+|++-|++|+.+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v-~~--------------------~g~~~~~k~~~~~~~i~~~~~~---------------- 45 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILV-SN--------------------PGLLELLKELGPDLKIIADYSL---------------- 45 (233)
T ss_pred HHHHHHHHHHhCCCCEEEE-cC--------------------HHHHHHHHHhCCCCcEEEecCc----------------
Confidence 5778899999999999776 31 1278999999999999998876
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC-CCccceeecc
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE-GFQHVSIMSY 293 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~-Gf~~v~ImSY 293 (432)
.|-|..|++.+.+. |++-|..|-=+ ....|++..... +. .+-|+-|
T Consensus 46 nv~N~~s~~~~~~~-------G~~~i~ls~EL--~~~ei~~i~~~~~~~-~~Ev~v~ 92 (233)
T PF01136_consen 46 NVFNSESARFLKEL-------GASRITLSPEL--SLEEIKEIAENSPGV-PLEVIVH 92 (233)
T ss_pred cCCCHHHHHHHHHc-------CCCEEEECccC--CHHHHHHHHHhCCCC-eEEEEEe
Confidence 24688888877654 88866665544 556666655555 44 4444444
No 127
>PRK00865 glutamate racemase; Provisional
Probab=73.01 E-value=46 Score=32.59 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=61.6
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 014017 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (432)
Q Consensus 202 aIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (432)
-++.|++.+|+ ++-++|..-.|| |.-..++=.+++.+.+-.+.++|||.|.=..--+
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PY------------G~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr 87 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPY------------GEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLR 87 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHH
Confidence 46788888994 888999999999 3334455555666777778889999885433322
Q ss_pred --------chHHHHHHHHHHCCCccceeecchhhhccccch
Q 014017 271 --------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 271 --------GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG 303 (432)
|-..+++.+....+..+++||+=..--.|.+|.
T Consensus 88 ~~~~iPvigi~~a~~~a~~~~~~~~igVLaT~~Ti~s~~y~ 128 (261)
T PRK00865 88 ERYDIPVVGIVPAIKPAAALTRNGRIGVLATPGTVKSAAYR 128 (261)
T ss_pred HhCCCCEEeeHHHHHHHHHhcCCCeEEEEECHHHhhchHHH
Confidence 223555666654466789999766655777764
No 128
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=72.61 E-value=33 Score=36.03 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcC--CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 159 LVQEVAKARDVG--VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 159 l~~~v~~~~~~G--I~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
-.+.++.+++.| +..+.| +. |.-..-.+.+.|+.||+.||++.||+
T Consensus 108 d~er~~~L~~a~~~~d~ivi----D~---------AhGhs~~~i~~ik~ir~~~p~~~via 155 (343)
T TIGR01305 108 DLEKMTSILEAVPQLKFICL----DV---------ANGYSEHFVEFVKLVREAFPEHTIMA 155 (343)
T ss_pred HHHHHHHHHhcCCCCCEEEE----EC---------CCCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 456677777765 444433 11 12223446778889999999888774
No 129
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=72.43 E-value=66 Score=31.73 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC---
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP--- 223 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~--- 223 (432)
||.=|--+. .+..+.++++.+.|...|-|=+- . -....|+.+++.. +.|++=+-+-|
T Consensus 80 ~~~G~g~~~-~~~~~~~~~l~~aGa~gv~iED~----------~-------~~~~~i~ai~~a~--i~ViaRtd~~pq~~ 139 (240)
T cd06556 80 LPFGAYGAP-TAAFELAKTFMRAGAAGVKIEGG----------E-------WHIETLQMLTAAA--VPVIAHTGLTPQSV 139 (240)
T ss_pred CCCCCCcCH-HHHHHHHHHHHHcCCcEEEEcCc----------H-------HHHHHHHHHHHcC--CeEEEEeCCchhhh
Confidence 443333243 35899999999999999887221 0 1344677777764 55554333322
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecc-hhhhccccc
Q 014017 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFY 302 (432)
Q Consensus 224 YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY-SaKyASsfY 302 (432)
-|..|+-+..+ ....++.+.+.|..+++||||+|-+..+ | ...+++.-++ -+++++.. +.+++..=+
T Consensus 140 ~~~gg~~~~~~------~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~--~e~~~~i~~~---~~~P~~~~gag~~~dgq~ 207 (240)
T cd06556 140 NTSGGDEGQYR------GDEAGEQLIADALAYAPAGADLIVMECV-P--VELAKQITEA---LAIPLAGIGAGSGTDGQF 207 (240)
T ss_pred hccCCceeecc------CHHHHHHHHHHHHHHHHcCCCEEEEcCC-C--HHHHHHHHHh---CCCCEEEEecCcCCCceE
Confidence 22334433332 3456888889999999999999998855 4 5555555444 24666654 333444444
Q ss_pred hhhhhhhhCC
Q 014017 303 GPFREALDSN 312 (432)
Q Consensus 303 GPFRdAa~Sa 312 (432)
=.+.|.++-.
T Consensus 208 lv~~d~lg~~ 217 (240)
T cd06556 208 LVLADAFGIT 217 (240)
T ss_pred EeHHhhhccc
Confidence 4455666553
No 130
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=72.38 E-value=9.6 Score=34.74 Aligned_cols=161 Identities=23% Similarity=0.308 Sum_probs=90.9
Q ss_pred HHHHHHHCCC----eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHH
Q 014017 203 IWLLKDRYPD----LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIR 277 (432)
Q Consensus 203 Ir~iK~~fPd----l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR 277 (432)
.+.|.+.+|. .+.+.|.+-.| ...... ++. .++-.+.+.+.+-.++++|+|+|.=...-+ --+..+|
T Consensus 13 ~~~l~~~~~~~~~~~v~~~~~~~~p---~~~~~~---~~~--~~~~~~~~~~~~~~l~~~g~d~i~i~C~s~~~~~~~~~ 84 (216)
T PF01177_consen 13 ERELRRMLPAREGQEVYFHDTRGFP---DRIKEE---DAG--MSAILDRLIEAAEKLEKAGVDAIVIACNSAHPFVDELR 84 (216)
T ss_dssp HHHHHHHSTTSCCTEEEEEETTTSC---TSHHHH---HHH--HHHHHHHHHHHHHHHHHTTESEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCEEEEEeCCCCC---CccHHH---hcc--hHHHHHHHHHHHHHHHhCCCCEEEEcCCchhhhHHHHh
Confidence 4667777776 66666666222 111111 001 111233777788888889999998777666 3344444
Q ss_pred -H---------------HHHHCCCccceeec-chhhhccccchhhhhhhhCCCCCC---Cccccccccc---CCCCCHHH
Q 014017 278 -A---------------ALDAEGFQHVSIMS-YTAKYASSFYGPFREALDSNPRFG---DKKTYVIRVI---ELYANYRE 334 (432)
Q Consensus 278 -~---------------aLD~~Gf~~v~ImS-YSaKyASsfYGPFRdAa~Sap~~g---DRktYQmd~~---~~p~N~~E 334 (432)
+ ++.+ |.++++|++ |...-..-|-.-|++..+-...+- .+.+| +++ ..+....+
T Consensus 85 ~~~~~iPv~~~~~a~~~~~~~-~~~ri~vl~t~~~~~~~~~~~~~~~~~gi~~~~~~~i~~~~~--~~~e~~~~~~~~~~ 161 (216)
T PF01177_consen 85 KERVGIPVVGIVEAALEAAKA-GGKRIGVLTTYTTEKSPLYEEFIEEAAGIDDEVVAGIHNAIY--DVIELGDIPPEQIE 161 (216)
T ss_dssp HHHHSSEEEESHHHHHHHHHH-TSSEEEEEESHHHHHHTHHHHHHHHCTTEECEEEEEEEEEHT--HHHHTTCTTHHHHH
T ss_pred hhcCceEEEeccHHHHHHHHh-cCCEEEEEecCcccchHHHHHHHHHhcCCcHHHHHHHHhhcH--HHHhhhcCCHHHHH
Confidence 2 2334 788999999 766544333333344323100000 11112 111 11222344
Q ss_pred HHHHHHhch--hcCCcEEEEc-CCCchh-HHHHHHHhhCCCCeE
Q 014017 335 ALVEAQADE--SEGADILLVK-PGLPYL-DVIRLLRDKYPLPIA 374 (432)
Q Consensus 335 Alre~~~Di--~EGAD~lMVK-Pal~YL-DII~~vk~~~~lPva 374 (432)
.+.+..... +.|+|.|+.= -.++++ +.+..+....++||.
T Consensus 162 ~~~~~~~~l~~~~~~d~iiLgCt~l~~~~~~~~~l~~~~gipVi 205 (216)
T PF01177_consen 162 ILAEAARELIKEDGADAIILGCTHLPLLLGAIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHCTTSSEEEEESTTGGGGHHHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHhccCCCCEEEECCCchHHHHHHHHhhcccCCCEEE
Confidence 566666555 7999988875 456677 999999998899975
No 131
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=71.56 E-value=81 Score=28.75 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHH
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDR 209 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~-g~v~raIr~iK~~ 209 (432)
|++.-..+. .+.+.++.+.+.|+..+=+ ++ -+. -+-++ .+-.+.++.|++.
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~g~d~i~~-~~-~Dg--------~~~~~~~~~~~~v~~i~~~ 54 (210)
T TIGR01163 3 PSILSADFA-RLGEEVKAVEEAGADWIHV-DV-MDG--------HFVPNLTFGPPVLEALRKY 54 (210)
T ss_pred chhhcCCHH-HHHHHHHHHHHcCCCEEEE-cC-CCC--------CCCCCcccCHHHHHHHHhc
Confidence 444444443 5889999999999999877 21 110 01001 1445788888864
No 132
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=71.32 E-value=14 Score=38.82 Aligned_cols=67 Identities=15% Similarity=0.208 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 014017 158 GLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 158 ~l~~~v~~~~~~--GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~ 235 (432)
+-.+.+++++++ |+..+.| +. |.-.+-.+.++|+.||+.||++.||+
T Consensus 108 ~d~er~~~L~~~~~g~D~ivi----D~---------AhGhs~~~i~~ik~ik~~~P~~~vIa------------------ 156 (346)
T PRK05096 108 ADFEKTKQILALSPALNFICI----DV---------ANGYSEHFVQFVAKAREAWPDKTICA------------------ 156 (346)
T ss_pred HHHHHHHHHHhcCCCCCEEEE----EC---------CCCcHHHHHHHHHHHHHhCCCCcEEE------------------
Confidence 346777777774 7766655 11 22333457789999999999988872
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
|.|-. .++|..+.+||||+|
T Consensus 157 -GNV~T-------~e~a~~Li~aGAD~v 176 (346)
T PRK05096 157 -GNVVT-------GEMVEELILSGADIV 176 (346)
T ss_pred -ecccC-------HHHHHHHHHcCCCEE
Confidence 32322 235556778999998
No 133
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=71.21 E-value=41 Score=36.36 Aligned_cols=68 Identities=26% Similarity=0.353 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+++.|+.-|.+=. . .|... .+...|+.||+.||++.|++ |
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~----a----~G~s~-----~~~~~i~~ik~~~~~~~v~a-------------------G 288 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDS----S----QGNSI-----YQIDMIKKLKSNYPHVDIIA-------------------G 288 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEec----C----CCCch-----HHHHHHHHHHhhCCCceEEE-------------------C
Confidence 458999999999999877621 1 11111 23569999999999988886 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
.|.+ .++|....+||||.|-
T Consensus 289 ~V~t-------~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 289 NVVT-------ADQAKNLIDAGADGLR 308 (495)
T ss_pred CcCC-------HHHHHHHHHcCCCEEE
Confidence 2222 2345556689999984
No 134
>PRK12928 lipoyl synthase; Provisional
Probab=71.02 E-value=29 Score=34.90 Aligned_cols=130 Identities=22% Similarity=0.194 Sum_probs=78.2
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHc 230 (432)
+.++.+ ++++.++++.+.|++-|.|-|.--+++.| + ...-+.+.++.||+.+|++.|= + |.|. +.
T Consensus 85 ~~~~~e-ei~~~a~~~~~~G~keivitg~~~dDl~d--~-----g~~~~~ell~~Ik~~~p~~~I~--~-ltp~----~~ 149 (290)
T PRK12928 85 MPLDPD-EPERVAEAVAALGLRYVVLTSVARDDLPD--G-----GAAHFVATIAAIRARNPGTGIE--V-LTPD----FW 149 (290)
T ss_pred CCCCHH-HHHHHHHHHHHCCCCEEEEEEEeCCcccc--c-----CHHHHHHHHHHHHhcCCCCEEE--E-eccc----cc
Confidence 457775 69999999999999999997752111111 0 0113678999999999987552 2 2221 11
Q ss_pred e----ee---cCCC-cccc------HH---------HHHHHHHHHHHHHHcCCCeecCCCCCCch------HHHHHHHHH
Q 014017 231 G----IV---REDG-VIMN------DE---------TVHQLCKQAVSQARAGADVVSPSDMMDGR------VGAIRAALD 281 (432)
Q Consensus 231 G----Il---~~~g-~IdN------D~---------Tl~~Lak~Avs~A~AGADiVAPSDMMDGr------V~aIR~aLD 281 (432)
| .+ .+.| .+-| |. |.++..+.--...+.|-++..-|+||=|- +...=+.|.
T Consensus 150 ~~~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lr 229 (290)
T PRK12928 150 GGQRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLR 229 (290)
T ss_pred cCCHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHH
Confidence 1 00 0111 1111 22 22222222233456788899999999885 223344677
Q ss_pred HCCCccceeecchh
Q 014017 282 AEGFQHVSIMSYTA 295 (432)
Q Consensus 282 ~~Gf~~v~ImSYSa 295 (432)
+.|+..+.|..|+.
T Consensus 230 el~~d~v~i~~Yl~ 243 (290)
T PRK12928 230 AVGCDRLTIGQYLR 243 (290)
T ss_pred hcCCCEEEEEcCCC
Confidence 88999999999977
No 135
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=70.29 E-value=98 Score=29.20 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=95.5
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
.+|... +.+ ..++.++.+.+.|+..|-+-+-.+. .+.+ ..+ -..+.++.+++..|++.+.+.+
T Consensus 11 ~~~~~~-s~e-~~~~i~~~L~~~GV~~IEvg~~~~~-~~~p-----~~~--~~~~~i~~l~~~~~~~~~~~l~------- 73 (265)
T cd03174 11 SEGATF-STE-DKLEIAEALDEAGVDSIEVGSGASP-KAVP-----QME--DDWEVLRAIRKLVPNVKLQALV------- 73 (265)
T ss_pred CCCCCC-CHH-HHHHHHHHHHHcCCCEEEeccCcCc-cccc-----cCC--CHHHHHHHHHhccCCcEEEEEc-------
Confidence 455433 775 6889999999999999988332222 1111 111 1356889999988766554322
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------------chHHHHHH---HHHHCCCcccee
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------------GRVGAIRA---ALDAEGFQHVSI 290 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-------------GrV~aIR~---aLD~~Gf~~v~I 290 (432)
+ +| .+.+-..+++|+|.|--+.-.. +.+..+.+ .+.+.|+.-..-
T Consensus 74 -------~-~~-----------~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~ 134 (265)
T cd03174 74 -------R-NR-----------EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGS 134 (265)
T ss_pred -------c-Cc-----------hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1 11 2223334567888877665443 12222222 234455521111
Q ss_pred ecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHH
Q 014017 291 MSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRL 364 (432)
Q Consensus 291 mSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~ 364 (432)
++++. +| ..+ |.-..+.++++ .+.|+|.|.++...-+ .++++.
T Consensus 135 ~~~~~-------~~-----------------~~~----~~~l~~~~~~~---~~~g~~~i~l~Dt~G~~~P~~v~~li~~ 183 (265)
T cd03174 135 LEDAF-------GC-----------------KTD----PEYVLEVAKAL---EEAGADEISLKDTVGLATPEEVAELVKA 183 (265)
T ss_pred EEeec-------CC-----------------CCC----HHHHHHHHHHH---HHcCCCEEEechhcCCcCHHHHHHHHHH
Confidence 11111 11 112 21122222222 4579999998876443 678889
Q ss_pred HHhhCC-CCeEEEEechhhHH----HHHHHHCC
Q 014017 365 LRDKYP-LPIAAYQVSGEYSM----IKAGGALK 392 (432)
Q Consensus 365 vk~~~~-lPvaaYqVSGEYaM----ikaAa~~G 392 (432)
+++.++ +|+. +|.--.+-| .-+|.++|
T Consensus 184 l~~~~~~~~~~-~H~Hn~~gla~an~laA~~aG 215 (265)
T cd03174 184 LREALPDVPLG-LHTHNTLGLAVANSLAALEAG 215 (265)
T ss_pred HHHhCCCCeEE-EEeCCCCChHHHHHHHHHHcC
Confidence 999887 7776 676444433 33355555
No 136
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=70.07 E-value=14 Score=36.75 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC--CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~--lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ 406 (432)
..|.+||+.. .+.|||+||+=| .+.+-++++.+..+ +|+.| -|-|+. |.+..
T Consensus 185 v~t~eea~~A----~~~gaDyI~ld~--~~~e~lk~~v~~~~~~ipi~A---------------sGGI~~-----~ni~~ 238 (265)
T TIGR00078 185 VESLEEAEEA----AEAGADIIMLDN--MKPEEIKEAVQLLKGRVLLEA---------------SGGITL-----DNLEE 238 (265)
T ss_pred eCCHHHHHHH----HHcCCCEEEECC--CCHHHHHHHHHHhcCCCcEEE---------------ECCCCH-----HHHHH
Confidence 5688786654 369999999977 57788888877543 77765 456775 45567
Q ss_pred HHHcCccEeeh
Q 014017 407 LRRAGADIILT 417 (432)
Q Consensus 407 ikRAGAd~IiT 417 (432)
+..+|+|.|-+
T Consensus 239 ~a~~Gvd~Isv 249 (265)
T TIGR00078 239 YAETGVDVISS 249 (265)
T ss_pred HHHcCCCEEEe
Confidence 78899999977
No 137
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=69.93 E-value=26 Score=35.40 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHcCCCeEEE----eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH--CCCeEEEeeecccCCCCCCcce
Q 014017 158 GLVQEVAKARDVGVNSVVL----FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L----Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~--fPdl~IitDVcLc~YTshGHcG 231 (432)
.+.+.|+++.+.|+..+.| ||+-..+. ...|+...-+..-..+-|++.++. -++++|++=+ |.|.
T Consensus 93 ~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~-~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiART--Da~~------ 163 (285)
T TIGR02320 93 HFRRLVRKLERRGVSAVCIEDKLGLKKNSLF-GNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARV--ESLI------ 163 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEeccCCCcccccc-CCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEec--cccc------
Confidence 5788899999999999998 55411111 111111122222335666776654 4678887432 1221
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCCc-hHHHHHHHHHHCCCccceee
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMDG-RVGAIRAALDAEGFQHVSIM 291 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-MMDG-rV~aIR~aLD~~Gf~~v~Im 291 (432)
...| -|++++ .|..+++||||+|-+-. +-|. .+..+-+.++.. |-++++|
T Consensus 164 --~~~~---~~eAi~----Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~-~p~~pl~ 215 (285)
T TIGR02320 164 --LGKG---MEDALK----RAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNH-YPRTPLV 215 (285)
T ss_pred --ccCC---HHHHHH----HHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhh-CCCCCEE
Confidence 0012 244544 47889999999998763 3332 334444444311 2245555
No 138
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=69.79 E-value=55 Score=34.26 Aligned_cols=148 Identities=16% Similarity=0.169 Sum_probs=89.8
Q ss_pred HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHH-HHcCCCeecCCCCCCchHHHHHH
Q 014017 200 PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQ-ARAGADVVSPSDMMDGRVGAIRA 278 (432)
Q Consensus 200 ~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~-A~AGADiVAPSDMMDGrV~aIR~ 278 (432)
..-.+.+++..|.-+|++|.=+-+|. .|.++..+-|..+ .++|||.|=-.|=..-++..||.
T Consensus 84 i~H~~aV~Rga~~a~vVaDmPfgSY~-----------------~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~ 146 (332)
T PLN02424 84 LVHCRAVARGANRPLLVGDLPFGSYE-----------------SSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKA 146 (332)
T ss_pred HHHHHHHhccCCCCEEEeCCCCCCCC-----------------CCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHH
Confidence 34556667778999999999776661 1334444445555 57999999888644346788887
Q ss_pred HHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc-ccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc
Q 014017 279 ALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK-KTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP 357 (432)
Q Consensus 279 aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR-ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~ 357 (432)
.- ++| +++|.+ +|=+|+.-.. ..|..- --=....++.++.+..=.+-||+.|.+ |..+
T Consensus 147 l~-~~G---IPV~gH---------------iGLtPQs~~~lGGykvq-Gr~~~~a~~li~dA~ale~AGAf~ivL-E~Vp 205 (332)
T PLN02424 147 IV-EAG---IAVMGH---------------VGLTPQAISVLGGFRPQ-GRTAESAVKVVETALALQEAGCFAVVL-ECVP 205 (332)
T ss_pred HH-HcC---CCEEEe---------------ecccceeehhhcCcccc-CCCHHHHHHHHHHHHHHHHcCCcEEEE-cCCc
Confidence 66 777 556655 3333431100 123221 000111234445555545689998866 5666
Q ss_pred hhHHHHHHHhhCCCCeEEE----EechhhHHHH
Q 014017 358 YLDVIRLLRDKYPLPIAAY----QVSGEYSMIK 386 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaY----qVSGEYaMik 386 (432)
-- +.++|.++.++|+... ..+|-.-.+.
T Consensus 206 ~~-la~~It~~l~IPtIGIGAG~~cDGQVLV~~ 237 (332)
T PLN02424 206 AP-VAAAITSALQIPTIGIGAGPFCSGQVLVYH 237 (332)
T ss_pred HH-HHHHHHHhCCCCEEeecCCCCCCceeEeHH
Confidence 66 9999999999999764 3444443333
No 139
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=69.69 E-value=19 Score=38.86 Aligned_cols=216 Identities=18% Similarity=0.181 Sum_probs=123.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
+..+++.+.+.|+..|-+|--+.+ . --+.++++..|+.-. .+. .|+| ||..-
T Consensus 97 v~~fv~~A~~~Gvd~irif~~lnd-~------------~n~~~~i~~ak~~G~--~v~--~~i~-~t~~p---------- 148 (467)
T PRK14041 97 VELFVKKVAEYGLDIIRIFDALND-I------------RNLEKSIEVAKKHGA--HVQ--GAIS-YTVSP---------- 148 (467)
T ss_pred hHHHHHHHHHCCcCEEEEEEeCCH-H------------HHHHHHHHHHHHCCC--EEE--EEEE-eccCC----------
Confidence 455699999999999999864332 1 126778888887753 333 3342 32110
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH----HCCCccceeecchhhhccccchhhh
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD----AEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD----~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
.. |++.+.+.|-...++|||.|+-.||.= -.|.++|+.++ -|. +|+.=|+-+.-.+..-.|-
T Consensus 149 ~~---t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~-Hnt~GlA~AN~laAieaGa-- 222 (467)
T PRK14041 149 VH---TLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHS-HCTTGLASLAYLAAVEAGA-- 222 (467)
T ss_pred CC---CHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEe-cCCCCcHHHHHHHHHHhCC--
Confidence 11 467777777778889999999999974 35677777653 112 4555566655555555552
Q ss_pred hhhhCCC-CCCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhC-CCC---------e
Q 014017 307 EALDSNP-RFGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKY-PLP---------I 373 (432)
Q Consensus 307 dAa~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~-~lP---------v 373 (432)
+.++++- .||-+.+ |.+ -|.+..+.. ..+-|-|+-.+.... +.++.+++++ .+| |
T Consensus 223 d~vD~sv~~~g~gag-N~a--------tE~lv~~L~~~g~~tgiDl~~L~~~~---~~~~~vr~~y~~~~~~~~~~~~~v 290 (467)
T PRK14041 223 DMFDTAISPFSMGTS-QPP--------FESMYYAFRENGKETDFDRKALKFLV---EYFTKVREKYSEYDVGMKSPDSRI 290 (467)
T ss_pred CEEEeeccccCCCCC-Chh--------HHHHHHHHHhcCCCCCcCHHHHHHHH---HHHHHHHHHHhhcCCCCCCCCcCe
Confidence 2233333 3666655 554 444444443 233455544333333 3344444433 222 3
Q ss_pred EEEEec-hhhHHHHH-HHHCCCchhhHHHHHHHHHHHHcCccEe-ehhcH
Q 014017 374 AAYQVS-GEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII-LTYFA 420 (432)
Q Consensus 374 aaYqVS-GEYaMika-Aa~~G~id~~~~~~EsL~~ikRAGAd~I-iTYfA 420 (432)
--||+= |-|+-++. +.++|..|.=.-++|-.--.++..-+.| +|=+.
T Consensus 291 ~~~q~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 340 (467)
T PRK14041 291 LVSQIPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTS 340 (467)
T ss_pred eeCCCCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChh
Confidence 445553 55665444 7788988865555665555665555555 55443
No 140
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=69.57 E-value=79 Score=30.69 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC--------C----CHHHHHHHHHHH--CCCeEEEeeecccC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--------G----LVPRTIWLLKDR--YPDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~--------g----~v~raIr~iK~~--fPdl~IitDVcLc~ 223 (432)
.+.++++.+.+.|+..+-| | +|- .|+..+..+-++ | ...+-++.+|+. .| +++|+-. .|
T Consensus 15 ~~~~~~~~l~~~Gad~iel-~-iPf--sdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p-v~lm~y~--n~ 87 (242)
T cd04724 15 TTLEILKALVEAGADIIEL-G-IPF--SDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP-IVLMGYY--NP 87 (242)
T ss_pred HHHHHHHHHHHCCCCEEEE-C-CCC--CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC-EEEEEec--CH
Confidence 5888999999999998877 6 353 455443222221 1 123355555553 34 4444111 11
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchh
Q 014017 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 224 YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa 295 (432)
+-.. | +-+-.-..+++|+|.|.--|.---....+++.+.++|..-+.+++-++
T Consensus 88 ~~~~---------G----------~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 88 ILQY---------G----------LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHh---------C----------HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 1000 0 122333467889994443333223777788888888886666666543
No 141
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=69.53 E-value=21 Score=35.63 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=51.2
Q ss_pred cccccccCCCCCHHHHHHHHHhchh-cCCcEEEEc---C--------CCch--------hHHHHHHHhhCCCCeEEEEec
Q 014017 320 TYVIRVIELYANYREALVEAQADES-EGADILLVK---P--------GLPY--------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVK---P--------al~Y--------LDII~~vk~~~~lPvaaYqVS 379 (432)
.-|+- +|.-|-+.++...++ -|+|.|=+= | +..+ .+|++.+++.+++||.+.-=
T Consensus 66 i~ql~-----g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir- 139 (319)
T TIGR00737 66 SVQLF-----GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIR- 139 (319)
T ss_pred EEEEe-----CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEE-
Confidence 36664 555544555555555 499998441 2 2232 48999999999999987742
Q ss_pred hhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 380 GEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 380 GEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.||-+...-..|....+..+|+|.|.
T Consensus 140 -----------~g~~~~~~~~~~~a~~l~~~G~d~i~ 165 (319)
T TIGR00737 140 -----------IGWDDAHINAVEAARIAEDAGAQAVT 165 (319)
T ss_pred -----------cccCCCcchHHHHHHHHHHhCCCEEE
Confidence 24533322345666778888999884
No 142
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=69.12 E-value=25 Score=36.07 Aligned_cols=102 Identities=24% Similarity=0.348 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHcCCCeEEE----eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcce
Q 014017 158 GLVQEVAKARDVGVNSVVL----FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L----Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP--dl~IitDVcLc~YTshGHcG 231 (432)
++-..|+++.+.|+-.+-+ +|+=--+. .|.+-.+.+- ..+=|+++++.-+ +++|++= |+ .
T Consensus 94 nvartV~~~~~aG~agi~iEDq~~pk~cgh~---~gk~l~~~~e-~v~rIkAa~~a~~~~~fvi~AR------Td----a 159 (289)
T COG2513 94 NVARTVRELEQAGAAGIHIEDQVGPKRCGHL---PGKELVSIDE-MVDRIKAAVEARRDPDFVIIAR------TD----A 159 (289)
T ss_pred HHHHHHHHHHHcCcceeeeeecccchhcCCC---CCCCcCCHHH-HHHHHHHHHHhccCCCeEEEee------hH----H
Confidence 4788899999999998876 22100000 1122222222 2345777777665 7777742 21 1
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHC
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAE 283 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~ 283 (432)
++. +| -|++++ -|..|.+||||+|-|-.+-| ...||+..+.-
T Consensus 160 ~~~-~~---ld~AI~----Ra~AY~eAGAD~if~~al~~--~e~i~~f~~av 201 (289)
T COG2513 160 LLV-EG---LDDAIE----RAQAYVEAGADAIFPEALTD--LEEIRAFAEAV 201 (289)
T ss_pred HHh-cc---HHHHHH----HHHHHHHcCCcEEccccCCC--HHHHHHHHHhc
Confidence 111 12 355555 57889999999999999999 77777776554
No 143
>PRK02227 hypothetical protein; Provisional
Probab=68.99 E-value=20 Score=35.73 Aligned_cols=43 Identities=40% Similarity=0.475 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc-CC-----CchhHHHHHHHhhCC--CCeEE
Q 014017 329 YANYREALVEAQADESEGADILLVK-PG-----LPYLDVIRLLRDKYP--LPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK-Pa-----l~YLDII~~vk~~~~--lPvaa 375 (432)
|.|.+||... ++.|||||=|| |. -.+.++|+++++..+ .||.|
T Consensus 7 vr~~eEA~~A----l~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSA 57 (238)
T PRK02227 7 VRNLEEALEA----LAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSA 57 (238)
T ss_pred cCCHHHHHHH----HhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCcee
Confidence 8899998776 46999999998 43 367999999999774 77765
No 144
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=68.73 E-value=17 Score=37.94 Aligned_cols=145 Identities=17% Similarity=0.205 Sum_probs=89.2
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCcccee-----ecchhhhccccchhhhhhhhCCC-----CCCCccc
Q 014017 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI-----MSYTAKYASSFYGPFREALDSNP-----RFGDKKT 320 (432)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~I-----mSYSaKyASsfYGPFRdAa~Sap-----~~gDRkt 320 (432)
.|....+||+|+|.-.|-. ..-..||.++-= |-|-+| -=+.++..+- .|| |
T Consensus 47 sA~i~d~aGvD~ILVGDSl---------gmv~lG~~~T~~Vtld~mi~H~~-------aV~Rga~~a~vVaDmPfg---S 107 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSA---------AMVVHGHDTTLPITLDEMLVHCR-------AVARGANRPLLVGDLPFG---S 107 (332)
T ss_pred HHHHHHHcCCCEEEECCcH---------HHHhcCCCCCCCcCHHHHHHHHH-------HHhccCCCCEEEeCCCCC---C
Confidence 3445567899999988754 233456655421 223221 0111111111 134 6
Q ss_pred ccccccCCCCCHHHHHHHHHhchh-cCCcEEEEcCC-CchhHHHHHHHhhCCCCeEE--------EEechhhHHHHHHHH
Q 014017 321 YVIRVIELYANYREALVEAQADES-EGADILLVKPG-LPYLDVIRLLRDKYPLPIAA--------YQVSGEYSMIKAGGA 390 (432)
Q Consensus 321 YQmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVKPa-l~YLDII~~vk~~~~lPvaa--------YqVSGEYaMikaAa~ 390 (432)
||.+ | ++|++.+.+=+. -|||.|=+.-+ -..+++|+.+. .-.+||.+ .+.-|-|..
T Consensus 108 Y~~s----~---e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykv------ 173 (332)
T PLN02424 108 YESS----T---DQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRP------ 173 (332)
T ss_pred CCCC----H---HHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccc------
Confidence 7766 4 899988887755 78999988887 45789999998 67899982 223344542
Q ss_pred CCCc-hhhHHHHHHHHHHHHcCccEeehhcH-HHHHHHHh
Q 014017 391 LKMI-DEQRVMMESLMCLRRAGADIILTYFA-LQAARCLC 428 (432)
Q Consensus 391 ~G~i-d~~~~~~EsL~~ikRAGAd~IiTYfA-~~~a~wL~ 428 (432)
+|-- ++-+-++|-..++..|||+.|+-=.- .++|+++.
T Consensus 174 qGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It 213 (332)
T PLN02424 174 QGRTAESAVKVVETALALQEAGCFAVVLECVPAPVAAAIT 213 (332)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHH
Confidence 2221 23356889999999999999864332 23555543
No 145
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.37 E-value=16 Score=36.74 Aligned_cols=66 Identities=23% Similarity=0.166 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ik 408 (432)
..|.+|+.+. .+.|||+||+.+ .-++-++++.+..+.|+... .-|-|+.+ .+..+.
T Consensus 195 v~tleea~~A----~~~gaDyI~lD~--~~~e~l~~~~~~~~~~i~i~-------------AiGGIt~~-----ni~~~a 250 (277)
T PRK08072 195 TETEEQVREA----VAAGADIIMFDN--RTPDEIREFVKLVPSAIVTE-------------ASGGITLE-----NLPAYG 250 (277)
T ss_pred eCCHHHHHHH----HHcCCCEEEECC--CCHHHHHHHHHhcCCCceEE-------------EECCCCHH-----HHHHHH
Confidence 4577775554 369999999975 45688888888665443211 14667754 556788
Q ss_pred HcCccEeehh
Q 014017 409 RAGADIILTY 418 (432)
Q Consensus 409 RAGAd~IiTY 418 (432)
.+|+|.|-+-
T Consensus 251 ~~Gvd~IAvg 260 (277)
T PRK08072 251 GTGVDYISLG 260 (277)
T ss_pred HcCCCEEEEC
Confidence 8999999763
No 146
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=67.94 E-value=4.2 Score=40.02 Aligned_cols=139 Identities=22% Similarity=0.328 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH
Q 014017 195 DNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG 274 (432)
Q Consensus 195 ~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~ 274 (432)
.+|. ++|+.||+.|||-.|++|.-.+ +.|.+ .+++| ++||||++.=|.+.| +.
T Consensus 41 ~eG~--~aV~~lr~~~pd~~IvAD~Kt~------------D~G~~--------e~~ma---~~aGAd~~tV~g~A~--~~ 93 (217)
T COG0269 41 AEGM--RAVRALRELFPDKIIVADLKTA------------DAGAI--------EARMA---FEAGADWVTVLGAAD--DA 93 (217)
T ss_pred HhhH--HHHHHHHHHCCCCeEEeeeeec------------chhHH--------HHHHH---HHcCCCEEEEEecCC--HH
Confidence 3465 8999999999999999997532 22433 34444 789999999999987 56
Q ss_pred HHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCC--CHHHHHHHHHhchhcCCcEEEE
Q 014017 275 AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYA--NYREALVEAQADESEGADILLV 352 (432)
Q Consensus 275 aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~--N~~EAlre~~~Di~EGAD~lMV 352 (432)
.|++++..+-=.+ +--|+| |.+ |..++.++... -|.|++.+
T Consensus 94 TI~~~i~~A~~~~-------------------------------~~v~iD---l~~~~~~~~~~~~l~~---~gvd~~~~ 136 (217)
T COG0269 94 TIKKAIKVAKEYG-------------------------------KEVQID---LIGVWDPEQRAKWLKE---LGVDQVIL 136 (217)
T ss_pred HHHHHHHHHHHcC-------------------------------CeEEEE---eecCCCHHHHHHHHHH---hCCCEEEE
Confidence 6666765542111 223444 222 33555555442 78888876
Q ss_pred cC-------CCch-hHHHHHHHhhCC--CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 353 KP-------GLPY-LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 353 KP-------al~Y-LDII~~vk~~~~--lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
== +... +|.+..+|+.++ ++|+. +|-|+.+ .+.-|+-.|++++|-
T Consensus 137 H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAV---------------aGGI~~~-----~i~~~~~~~~~ivIv 191 (217)
T COG0269 137 HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAV---------------AGGITPE-----DIPLFKGIGADIVIV 191 (217)
T ss_pred EecccHhhcCCCccHHHHHHHHHhhccCceEEE---------------ecCCCHH-----HHHHHhcCCCCEEEE
Confidence 32 2333 788888888775 56654 6777754 455677789999884
No 147
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.92 E-value=97 Score=28.92 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=36.1
Q ss_pred hcCCcEEEEcCC------C----chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc
Q 014017 344 SEGADILLVKPG------L----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 344 ~EGAD~lMVKPa------l----~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd 413 (432)
+.|||++.+-+. . .=++.|+++++.+++|+.+ .|-+...+-+.|.+ .+|||
T Consensus 120 ~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~---------------~GGI~~~~~v~~~l----~~Gad 180 (236)
T cd04730 120 AAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIA---------------AGGIADGRGIAAAL----ALGAD 180 (236)
T ss_pred HcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEE---------------ECCCCCHHHHHHHH----HcCCc
Confidence 378999887431 1 2267999999988999886 33454422334443 48999
Q ss_pred Eeeh
Q 014017 414 IILT 417 (432)
Q Consensus 414 ~IiT 417 (432)
.|+.
T Consensus 181 gV~v 184 (236)
T cd04730 181 GVQM 184 (236)
T ss_pred EEEE
Confidence 8763
No 148
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=67.11 E-value=36 Score=33.32 Aligned_cols=93 Identities=27% Similarity=0.363 Sum_probs=59.1
Q ss_pred CCCCCHHHHHHHHHhchhcCCcEEEEcCCCc--------hhHHHHHHHhhC-CCCeEE-EE---------ec-hhh-HHH
Q 014017 327 ELYANYREALVEAQADESEGADILLVKPGLP--------YLDVIRLLRDKY-PLPIAA-YQ---------VS-GEY-SMI 385 (432)
Q Consensus 327 ~~p~N~~EAlre~~~Di~EGAD~lMVKPal~--------YLDII~~vk~~~-~lPvaa-Yq---------VS-GEY-aMi 385 (432)
....+.+|.++++..=..+|||+|=..-... -+++++.+++.+ ++|+.. |- .| .|| ..+
T Consensus 22 l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 101 (253)
T PRK02412 22 IMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI 101 (253)
T ss_pred eCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence 3456667777777655568999997665522 124566677766 589654 32 22 223 466
Q ss_pred HHHHHCC---Cchhh-----HHHHHHHHHHHHcCccEeehhc
Q 014017 386 KAGGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 386 kaAa~~G---~id~~-----~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+.+...| |+|-+ +.+-+.+...++.|..+|+||+
T Consensus 102 ~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 143 (253)
T PRK02412 102 KAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYH 143 (253)
T ss_pred HHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeC
Confidence 7788777 34443 3455555666788999999997
No 149
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=66.71 E-value=16 Score=36.37 Aligned_cols=73 Identities=33% Similarity=0.358 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhH---HHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLD---VIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESL 404 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLD---II~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL 404 (432)
..|.+|+.+.+ +.|||+||+-|-.+ -| +++.++..+ ++|+.| -|-|++ |.+
T Consensus 190 v~t~eea~~A~----~~gaD~I~ld~~~p-~~l~~~~~~~~~~~~~i~i~A---------------sGGI~~-----~ni 244 (272)
T cd01573 190 VDSLEEALAAA----EAGADILQLDKFSP-EELAELVPKLRSLAPPVLLAA---------------AGGINI-----ENA 244 (272)
T ss_pred cCCHHHHHHHH----HcCCCEEEECCCCH-HHHHHHHHHHhccCCCceEEE---------------ECCCCH-----HHH
Confidence 56888876654 68999999976422 22 333333332 467654 455665 556
Q ss_pred HHHHHcCccEeehhcHHHHHHHH
Q 014017 405 MCLRRAGADIILTYFALQAARCL 427 (432)
Q Consensus 405 ~~ikRAGAd~IiTYfA~~~a~wL 427 (432)
..+.++|+|.|.+-.--. |+|+
T Consensus 245 ~~~~~~Gvd~I~vsai~~-a~~~ 266 (272)
T cd01573 245 AAYAAAGADILVTSAPYY-AKPA 266 (272)
T ss_pred HHHHHcCCcEEEEChhhc-Cccc
Confidence 678999999996644333 4444
No 150
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=66.61 E-value=15 Score=36.39 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=71.2
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-| .++.|++- +.+.|+|-|.+.+- .+=|...++...+..+ .+++|+.-..
T Consensus 13 ~~dg~iD~~-~l~~l~~~---l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv~---------- 77 (289)
T cd00951 13 DADGSFDED-AYRAHVEW---LLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA-GRVPVLAGAG---------- 77 (289)
T ss_pred CCCCCcCHH-HHHHHHHH---HHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC-CCCCEEEecC----------
Confidence 345777744 34444444 45689998876653 2345555666665543 3455542211
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
. |.+|+++.+..=.+-|||.+|+=|-..+ .+-.+.+.+.+++||..|+-
T Consensus 78 -----------------------~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 78 -----------------------Y-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred -----------------------C-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 2 5566766666666789999999775433 33445666778899999997
Q ss_pred ch---hhHHHHHHHH
Q 014017 379 SG---EYSMIKAGGA 390 (432)
Q Consensus 379 SG---EYaMikaAa~ 390 (432)
+| ....++.-++
T Consensus 134 ~g~~l~~~~l~~L~~ 148 (289)
T cd00951 134 ANAVLTADSLARLAE 148 (289)
T ss_pred CCCCCCHHHHHHHHh
Confidence 77 3334444343
No 151
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=66.47 E-value=32 Score=31.96 Aligned_cols=74 Identities=30% Similarity=0.390 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHhchhc-CCcEEEEcCCCc-------------------hhHHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 329 YANYREALVEAQADESE-GADILLVKPGLP-------------------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 329 p~N~~EAlre~~~Di~E-GAD~lMVKPal~-------------------YLDII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
-+|.-+.+.++..-+.+ |+|.|=++=+-| ..+||+.+++..++|+.+-- +
T Consensus 62 ~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~-r--------- 131 (231)
T cd02801 62 GGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI-R--------- 131 (231)
T ss_pred cCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE-e---------
Confidence 46656667777777887 999998874443 36999999998888887632 1
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
.||-++ .-..|.+..+..+|+|.|
T Consensus 132 --~~~~~~-~~~~~~~~~l~~~Gvd~i 155 (231)
T cd02801 132 --LGWDDE-EETLELAKALEDAGASAL 155 (231)
T ss_pred --eccCCc-hHHHHHHHHHHHhCCCEE
Confidence 345332 245666777778899887
No 152
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=66.43 E-value=1.2e+02 Score=28.70 Aligned_cols=180 Identities=19% Similarity=0.174 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.++.++.+.+.|++.+.+.= ||. +.+........|+.|.+.++ +-++ + +|
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~d------l~~----~~~~~~~~~~~i~~i~~~~~-~~l~----------------v--~G 83 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVD------LDG----AFEGERKNAEAIEKIIEAVG-VPVQ----------------L--GG 83 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEe------chh----hhcCCcccHHHHHHHHHHcC-CcEE----------------E--cC
Confidence 479999999999999987742 221 22222333567777766653 2111 2 46
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
-|...+.++.+.+ +|||.|. -+.++ -.-..+++..+.-|-+ ..+.|-+.|- |+.. + .|
T Consensus 84 Gi~~~~~~~~~~~-------~Ga~~v~iGs~~~-~~~~~~~~i~~~~g~~-~i~~sid~~~-----~~v~--~-----~g 142 (241)
T PRK13585 84 GIRSAEDAASLLD-------LGVDRVILGTAAV-ENPEIVRELSEEFGSE-RVMVSLDAKD-----GEVV--I-----KG 142 (241)
T ss_pred CcCCHHHHHHHHH-------cCCCEEEEChHHh-hChHHHHHHHHHhCCC-cEEEEEEeeC-----CEEE--E-----CC
Confidence 6776666665543 8998543 33333 2234456666555543 3344544431 1111 0 02
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCC----CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLV---KPG----LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPa----l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa 389 (432)
.+.+=.. +..|..++. .+.|+|.|.+ ++. .+-+++|+++++..++|+.+
T Consensus 143 ~~~~~~~-------~~~~~~~~~---~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia-------------- 198 (241)
T PRK13585 143 WTEKTGY-------TPVEAAKRF---EELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIA-------------- 198 (241)
T ss_pred CcccCCC-------CHHHHHHHH---HHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEE--------------
Confidence 1111012 334544444 4689998886 432 24589999999999999875
Q ss_pred HCCCch-hhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMID-EQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id-~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.|-+. .+. +..++++||+.++.
T Consensus 199 -~GGI~~~~d-----i~~~~~~Ga~gv~v 221 (241)
T PRK13585 199 -SGGVTTLDD-----LRALKEAGAAGVVV 221 (241)
T ss_pred -eCCCCCHHH-----HHHHHHcCCCEEEE
Confidence 33333 333 23357789997653
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=66.16 E-value=20 Score=38.95 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-ee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DV 219 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit-DV 219 (432)
+..+.++.+++.|+.-|.+=. + ...+--+...|+.||+.||++.||+ ||
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~--~-----------~g~~~~~~~~i~~ik~~~p~~~vi~g~v 297 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS--S-----------QGDSIYQLEMIKYIKKTYPELDVIGGNV 297 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC--C-----------CCCcHHHHHHHHHHHHhCCCCcEEEecC
Confidence 468999999999998877611 1 1122234578999999999988763 44
No 154
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=66.10 E-value=47 Score=33.87 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCC--CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSVVL-FPKVPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~--~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~ 234 (432)
.+.+-++.+.+.|...|-| +|- |. ..+|..|+...+.-.++...++.++++.. +-| +|=+ --| +
T Consensus 78 ~~~~aA~~~~~~g~d~IdlN~gC-P~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~-~pV--svKi----R~g----~- 144 (333)
T PRK11815 78 DLAEAAKLAEDWGYDEINLNVGC-PSDRVQNGRFGACLMAEPELVADCVKAMKDAVS-IPV--TVKH----RIG----I- 144 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCC-CHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcC-Cce--EEEE----Eee----e-
Confidence 3566666677889998877 554 32 35788899998888899999999998752 111 1111 001 1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
+.+.|.+.+.+.+-...++|+|.|.-.
T Consensus 145 -----~~~~t~~~~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 145 -----DDQDSYEFLCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred -----CCCcCHHHHHHHHHHHHHhCCCEEEEc
Confidence 112244445566666679999999855
No 155
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=65.89 E-value=2.2e+02 Score=31.60 Aligned_cols=149 Identities=11% Similarity=0.133 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccceee---c----chhhhccccchhhhhhhhCCCCC
Q 014017 244 TVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM---S----YTAKYASSFYGPFREALDSNPRF 315 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~Im---S----YSaKyASsfYGPFRdAa~Sap~~ 315 (432)
+-+.+++.+....++||.+|.=..=-. -.|++||++|+. ..-+..- . =-+..+-.-+..|.+.+.+.+
T Consensus 248 ~p~~~~~~~~~~~~~Ga~iiGGCCgt~P~hI~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-- 323 (612)
T PRK08645 248 NPEYFAEYALEFVEQGVRLIGGCCGTTPEHIRAMARALKG--LKPVTEKEVKPRPKVVVTEEPLKAKSSLLDKLKKGK-- 323 (612)
T ss_pred CHHHHHHHHHHHHHhCCCEEeEecCCCHHHHHHHHHHhcc--CCCccccccccccccccccccccccchHHHHHhCCC--
Confidence 456688999999999999996443333 489999999963 3222211 0 012255678889999997643
Q ss_pred CCcccccccccCCCCCH--HHHHHHHHhchhc-CCcEEEE------cCCCchhHHHHHHHhhCCCCeEEEEechhhHHHH
Q 014017 316 GDKKTYVIRVIELYANY--REALVEAQADESE-GADILLV------KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIK 386 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~--~EAlre~~~Di~E-GAD~lMV------KPal~YLDII~~vk~~~~lPvaaYqVSGEYaMik 386 (432)
+-||.+. |.-. .+.+.+....+.+ |.|.+-| .+-+.-+.+...+++.+++|+..+-. .
T Consensus 324 --~vs~E~~----PPk~~~~~~l~~~~~~L~~~~~d~i~Vtd~~~g~~r~~s~~~a~~l~~~~gi~~i~Hlt-c------ 390 (612)
T PRK08645 324 --TVIVELD----PPKGLDTDKFLEGAKALKEAGVDAITLADNPLARVRISNIALASLIKRELGIEPLVHIT-C------ 390 (612)
T ss_pred --eEEEEEC----CCCCCCHHHHHHHHHHHhcCCCCEEEcCCCCCcccccCHHHHHHHHHHHhCCCeeeEec-C------
Confidence 3588887 7633 3667777777776 5899887 45566789999999999999877543 2
Q ss_pred HHHHCCCchhh-HHHHHHHHHHHHcCccEee
Q 014017 387 AGGALKMIDEQ-RVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 387 aAa~~G~id~~-~~~~EsL~~ikRAGAd~Ii 416 (432)
.|.. ..+.+.|..++.+|.+-|+
T Consensus 391 -------~d~n~~~l~~~L~~~~~~Gv~nIL 414 (612)
T PRK08645 391 -------RDRNLIGLQSHLLGLHALGIRNVL 414 (612)
T ss_pred -------CCcCHHHHHHHHHHHHHcCCceEE
Confidence 2333 3445557788888888653
No 156
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=65.79 E-value=22 Score=42.43 Aligned_cols=223 Identities=17% Similarity=0.176 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 014017 156 RHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 156 ~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~ 235 (432)
|+-+..+++.+.+.||.-+-+|=- +|+=-=+..+|+.+|+.- ..+-.|+| ||.+ +++.
T Consensus 624 d~vv~~f~~~~~~~GidifrifD~-------------lN~~~n~~~~~~~~~~~g----~~~~~~i~-yt~~----~~d~ 681 (1143)
T TIGR01235 624 DNVVKYFVKQAAQGGIDIFRVFDS-------------LNWVENMRVGMDAVAEAG----KVVEAAIC-YTGD----ILDP 681 (1143)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcc-------------CcCHHHHHHHHHHHHHcC----CEEEEEEE-Eecc----CCCc
Confidence 445677888999999998888742 444444667899998863 35666777 7632 2322
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH----CCCccceeecchhhhccccch
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA----EGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~----~Gf~~v~ImSYSaKyASsfYG 303 (432)
...+. |++.+.+.|-...++|||+|+-.||.= --|.+||+.++- |. +|+.=|+-+.-.+..--|
T Consensus 682 ~~~~~---~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~-Hdt~Gla~an~laA~eaG 757 (1143)
T TIGR01235 682 ARPKY---DLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHT-HDTSGIAVASMLAAVEAG 757 (1143)
T ss_pred CCCCC---CHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEE-CCCCCcHHHHHHHHHHhC
Confidence 22233 466666666667889999999999974 356777776521 11 344334443323332223
Q ss_pred hhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHh--chhcCCcEEEEcCCCchhHHHHHHHhhCC-------CCe
Q 014017 304 PFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQA--DESEGADILLVKPGLPYLDVIRLLRDKYP-------LPI 373 (432)
Q Consensus 304 PFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~--Di~EGAD~lMVKPal~YLDII~~vk~~~~-------lPv 373 (432)
=|.++++-. ++ -.+.|-+ -|.+..+.. +.+-|-|+=.+.....|+.=+|..-..|. .=|
T Consensus 758 --ad~vD~ai~gl~-G~ts~p~--------~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~v 826 (1143)
T TIGR01235 758 --VDVVDVAVDSMS-GLTSQPS--------LGAIVAALEGSERDPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASEV 826 (1143)
T ss_pred --CCEEEecchhhc-CCCCCHh--------HHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcCe
Confidence 122333332 22 2355554 355555544 34556666666665555544444333332 124
Q ss_pred EEEEe-chhhHHHHH-HHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 374 AAYQV-SGEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 374 aaYqV-SGEYaMika-Aa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
--||+ -|-|+=++. +.+.|+.|.=.-++|.....++-.-++|
T Consensus 827 ~~~~~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~ 870 (1143)
T TIGR01235 827 YLHEMPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIV 870 (1143)
T ss_pred EEecCCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCc
Confidence 44555 356665554 6678887754444444444444444544
No 157
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=65.55 E-value=7.6 Score=40.81 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-HHHHHHHHHCCCeEEEe--------eecccCCCCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-RTIWLLKDRYPDLVIYT--------DVALDPYSSD 227 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~-raIr~iK~~fPdl~Iit--------DVcLc~YTsh 227 (432)
++-++.++.+.+.|.+.+.+.|... ..|+. .-|++. .+|+.||+.+||+-||+ |++.|-= -+
T Consensus 155 ~kTvd~ak~~e~aG~~~ltVHGRtr-~~kg~-------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~-~t 225 (358)
T KOG2335|consen 155 EKTVDYAKMLEDAGVSLLTVHGRTR-EQKGL-------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLK-YT 225 (358)
T ss_pred HHHHHHHHHHHhCCCcEEEEecccH-HhcCC-------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHH-Hh
Confidence 3578888899999999999999854 34433 234443 79999999999988876 6665532 47
Q ss_pred CcceeecCCCccccHH
Q 014017 228 GHDGIVREDGVIMNDE 243 (432)
Q Consensus 228 GHcGIl~~~g~IdND~ 243 (432)
|-+||..-.|.+.|-.
T Consensus 226 G~dGVM~arglL~NPa 241 (358)
T KOG2335|consen 226 GADGVMSARGLLYNPA 241 (358)
T ss_pred CCceEEecchhhcCch
Confidence 8899987678888765
No 158
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=65.30 E-value=35 Score=31.25 Aligned_cols=97 Identities=26% Similarity=0.415 Sum_probs=56.3
Q ss_pred ccccCCCCCHHHHHHHHHhc-hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch------
Q 014017 323 IRVIELYANYREALVEAQAD-ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID------ 395 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~D-i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id------ 395 (432)
+++...-++.+||+..+..= +++|+|+++---+.. ..+|+.+++||.--++|| |-++++-.++....
T Consensus 10 ~~i~v~~~~~e~~v~~a~~~~~~~g~dViIsRG~ta-----~~lr~~~~iPVV~I~~s~-~Dil~al~~a~~~~~~Iavv 83 (176)
T PF06506_consen 10 AEIDVIEASLEEAVEEARQLLESEGADVIISRGGTA-----ELLRKHVSIPVVEIPISG-FDILRALAKAKKYGPKIAVV 83 (176)
T ss_dssp SEEEEEE--HHHHHHHHHHHHTTTT-SEEEEEHHHH-----HHHHCC-SS-EEEE---H-HHHHHHHHHCCCCTSEEEEE
T ss_pred ceEEEEEecHHHHHHHHHHhhHhcCCeEEEECCHHH-----HHHHHhCCCCEEEECCCH-hHHHHHHHHHHhcCCcEEEE
Confidence 44556678899999998887 789999999877633 234556677777777776 44455444433222
Q ss_pred --------------------------hhHHHHHHHHHHHHcCccEeehh-cHHHHHH
Q 014017 396 --------------------------EQRVMMESLMCLRRAGADIILTY-FALQAAR 425 (432)
Q Consensus 396 --------------------------~~~~~~EsL~~ikRAGAd~IiTY-fA~~~a~ 425 (432)
..+-+.+.+..+++.|+|.||.- ++.++|+
T Consensus 84 ~~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~~~~A~ 140 (176)
T PF06506_consen 84 GYPNIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVVCRLAR 140 (176)
T ss_dssp EESS-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHHHHHHH
T ss_pred ecccccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHHHHHHH
Confidence 13345566777788899998864 4445554
No 159
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.17 E-value=18 Score=34.94 Aligned_cols=53 Identities=32% Similarity=0.523 Sum_probs=40.7
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 141 ~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
...|..+||++ -..|+..+.+.|..-|.+||. + .-| ...|+.+|..||++-++
T Consensus 107 ~~~i~~iPG~~-------T~~E~~~A~~~Gad~vklFPa--~------------~~G--~~~ik~l~~~~p~ip~~ 159 (213)
T PRK06552 107 LYQIPYLPGCM-------TVTEIVTALEAGSEIVKLFPG--S------------TLG--PSFIKAIKGPLPQVNVM 159 (213)
T ss_pred HcCCCEECCcC-------CHHHHHHHHHcCCCEEEECCc--c------------cCC--HHHHHHHhhhCCCCEEE
Confidence 45889999993 257788899999999999983 1 124 45699999999985544
No 160
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=65.02 E-value=30 Score=33.58 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=42.1
Q ss_pred hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch--hhHHHHHHHHHHHHcCccEeeh
Q 014017 343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID--EQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 343 i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id--~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.+.|||+|-+.-. .=++.++++.+..++||.+ .|-++ ..+-++|-+..+.++||+.|..
T Consensus 166 ~~~GADyikt~~~-~~~~~l~~~~~~~~iPVva---------------~GGi~~~~~~~~~~~i~~~~~aGa~Gia~ 226 (258)
T TIGR01949 166 AELGADIVKTPYT-GDIDSFRDVVKGCPAPVVV---------------AGGPKTNSDREFLQMIKDAMEAGAAGVAV 226 (258)
T ss_pred HHHCCCEEeccCC-CCHHHHHHHHHhCCCcEEE---------------ecCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 4689999998521 2268899999888999965 24454 2345577777888888887653
No 161
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=65.01 E-value=25 Score=34.00 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.4
Q ss_pred hcCCcEEEE-------cCCCch--hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 344 SEGADILLV-------KPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 344 ~EGAD~lMV-------KPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
+.|||.|.+ ||..+- ++.++.+++.+++||.|- |-|+. |.+..++.+||+.
T Consensus 129 ~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAI---------------GGI~~-----~n~~~~~~~GA~g 188 (221)
T PRK06512 129 ELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQ---------------AGSDL-----ASAVEVAETGAEF 188 (221)
T ss_pred hcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEE---------------eCCCH-----HHHHHHHHhCCCE
Confidence 589999999 553222 789999999999999873 44554 4455677889998
Q ss_pred ee
Q 014017 415 IL 416 (432)
Q Consensus 415 Ii 416 (432)
|-
T Consensus 189 iA 190 (221)
T PRK06512 189 VA 190 (221)
T ss_pred EE
Confidence 73
No 162
>cd08211 RuBisCO_large_II Ribulose bisphosphate carboxylase large chain, Form II. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form II is mainly found in bacteria, and forms large subunit oligomers (dimers, tetramers, etc.) that do not include small subunits.
Probab=64.58 E-value=22 Score=38.29 Aligned_cols=136 Identities=12% Similarity=0.063 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC--------CCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPS--------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPS--------DMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
-|-+.+++++..++..| |+|==- .=++-||.++.++++++ .+.+
T Consensus 170 lsp~~~a~~~y~~~~GG-D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a-------------------------~~eT-- 221 (439)
T cd08211 170 LRPKPFAEACYAFWLGG-DFIKNDEPQANQPFCPLKKVIPLVADAMRRA-------------------------QDET-- 221 (439)
T ss_pred CCHHHHHHHHHHHHhcC-CccccccccCCCCCCCHHHHHHHHHHHHHHH-------------------------HHhh--
Confidence 46778999999999999 997311 11223333333333322 2222
Q ss_pred CCCcccccccccCCCC--CHHHHHHHHHhchhcCC-----cEEEEcCCCchhHHHHHHHhh-CCCCeEEEEechhhHHHH
Q 014017 315 FGDKKTYVIRVIELYA--NYREALVEAQADESEGA-----DILLVKPGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIK 386 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~--N~~EAlre~~~Di~EGA-----D~lMVKPal~YLDII~~vk~~-~~lPvaaYqVSGEYaMik 386 (432)
|.|+.|-.| -. ..+|.++.+..=.++|+ ..+||=+...=++.++.+++. .++||-+ |=.|-=+|..
T Consensus 222 -G~~~~ya~N----iTa~~~~em~~ra~~a~~~gg~~~G~~~vMv~~~~~G~~al~~lr~~~~~l~Iha-HrA~~ga~~r 295 (439)
T cd08211 222 -GEAKLFSAN----ITADDPDEMIARGEYILEAFGPNAGHVAFLVDGYVAGPAAVTTARRRFPDQFLHY-HRAGHGAVTS 295 (439)
T ss_pred -CCcceEEec----CCCCCHHHHHHHHHHHHHhcCcccCceEEEECcccchHHHHHHHHhhCCCcEEEe-cccccccccc
Confidence 788999988 43 57899999988888877 999999997779999999984 5788863 2221111111
Q ss_pred HHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 387 AGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 387 aAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
..-+.|+ +. . ++= +-+|=||||.+.+
T Consensus 296 ~~~~~Gi-s~-~-vl~--kl~RLaGaD~~h~ 321 (439)
T cd08211 296 PQSKRGY-TA-F-VLS--KMARLQGASGIHT 321 (439)
T ss_pred cccCCCc-cH-H-HHH--HHHHhcCCCcccc
Confidence 0112344 22 2 332 2356699999985
No 163
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=64.47 E-value=27 Score=33.56 Aligned_cols=55 Identities=24% Similarity=0.358 Sum_probs=40.6
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 188 ~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
.|.+-+-..| .+.|+.||+.||+..|++|.-+. |.+.|+... .+++|||++.-..
T Consensus 34 vG~~l~~~~G--~~~i~~lk~~~~~~~v~~DLK~~-----------------Di~~~v~~~------~~~~Gad~vTvH~ 88 (216)
T PRK13306 34 VGTILLLAEG--MKAVRVLRALYPDKIIVADTKIA-----------------DAGKILAKM------AFEAGADWVTVIC 88 (216)
T ss_pred EChHHHHHhC--HHHHHHHHHHCCCCEEEEEEeec-----------------CCcHHHHHH------HHHCCCCEEEEeC
Confidence 3455566667 47899999999999999998873 334555533 6789999987765
No 164
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=64.36 E-value=8.8 Score=34.23 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=40.7
Q ss_pred HHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHHhccC
Q 014017 388 GGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGEK 431 (432)
Q Consensus 388 Aa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~~~~ 431 (432)
+...|.+|.+..+-|....++-||-|=|+.=.-+|+-.||..+|
T Consensus 91 ~L~~G~vd~e~~~~~~~~kLk~AGidkV~~E~QkQlda~~~~~k 134 (134)
T PF12010_consen 91 PLETGLVDPEEALPEFNEKLKAAGIDKVIAELQKQLDAFLAANK 134 (134)
T ss_pred HHHccCCCHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcC
Confidence 67799999999999999999999999999999999999998664
No 165
>PRK09234 fbiC FO synthase; Reviewed
Probab=64.29 E-value=28 Score=40.19 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=59.8
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCc-EEEEc------CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGAD-ILLVK------PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD-~lMVK------Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaA 388 (432)
+-..|.|+ + +|.+.++..-.+.|+. +.||- +...|+|+++.+|+++ ++.+-||.-. -....|
T Consensus 551 ~~~~y~Ls----~---eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~---Ei~~~a 620 (843)
T PRK09234 551 DADAYTLS----L---DEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVHAFSPM---EIVNGA 620 (843)
T ss_pred CCCcccCC----H---HHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChH---HHHHHH
Confidence 34578887 5 6666666666667776 44541 2224899999999998 4888777421 223456
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
...|+..+ |.|..+|.||.|.+--
T Consensus 621 ~~~Gl~~~-----e~l~~LkeAGLds~pg 644 (843)
T PRK09234 621 ARLGLSIR-----EWLTALREAGLDTIPG 644 (843)
T ss_pred HHcCCCHH-----HHHHHHHHhCcCccCC
Confidence 67787554 8899999999998754
No 166
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=64.15 E-value=35 Score=30.16 Aligned_cols=55 Identities=31% Similarity=0.392 Sum_probs=38.9
Q ss_pred hhcCCcEEEE--------cCC---CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcC
Q 014017 343 ESEGADILLV--------KPG---LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 411 (432)
Q Consensus 343 i~EGAD~lMV--------KPa---l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAG 411 (432)
.+.|+|.|++ ||+ ..-++.++++++..++|+.+ .|-++. |.+..++++|
T Consensus 112 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a---------------~GGi~~-----~~i~~~~~~G 171 (196)
T cd00564 112 EELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVA---------------IGGITP-----ENAAEVLAAG 171 (196)
T ss_pred hhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCH-----HHHHHHHHcC
Confidence 3469999986 333 12378999998888889876 355664 3566777889
Q ss_pred ccEeeh
Q 014017 412 ADIILT 417 (432)
Q Consensus 412 Ad~IiT 417 (432)
||.|..
T Consensus 172 a~~i~~ 177 (196)
T cd00564 172 ADGVAV 177 (196)
T ss_pred CCEEEE
Confidence 998753
No 167
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=64.09 E-value=87 Score=32.00 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=68.5
Q ss_pred hhHhhhccCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc--
Q 014017 114 AMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-- 191 (432)
Q Consensus 114 ~~R~l~~Et~Ls~~~LI~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~-- 191 (432)
.+|++.+-+. .||.+.-+.. |+-..++...|+++.+.|+-.|.|==.+.+ | .+|..
T Consensus 68 ~~~~I~~~~~-------lPv~aD~dtG------------yG~~~~v~r~V~~~~~aGaagi~IEDq~~p--K-~cg~~~~ 125 (294)
T TIGR02319 68 NAKNIVLAVD-------VPVIMDADAG------------YGNAMSVWRATREFERVGIVGYHLEDQVNP--K-RCGHLEG 125 (294)
T ss_pred HHHHHHhccC-------CCEEEECCCC------------CCCcHHHHHHHHHHHHcCCeEEEEECCCCc--c-ccCCCCC
Confidence 4556665554 4988874332 111123677889999999999888111100 0 01111
Q ss_pred -CcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 192 -AYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 192 -A~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
..-+-.-..+-|++.++.- ||++|++=+- .+. + .| -|++|++ |..|++||||+|-+-..
T Consensus 126 k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTD--a~~--~-------~g---~deaI~R----a~aY~eAGAD~ifi~~~ 187 (294)
T TIGR02319 126 KRLISTEEMTGKIEAAVEAREDEDFTIIARTD--ARE--S-------FG---LDEAIRR----SREYVAAGADCIFLEAM 187 (294)
T ss_pred ccccCHHHHHHHHHHHHHhccCCCeEEEEEec--ccc--c-------CC---HHHHHHH----HHHHHHhCCCEEEecCC
Confidence 1111112244555566543 6788875322 121 1 12 2566655 78899999999988665
Q ss_pred CC-chHHHHHHHH
Q 014017 269 MD-GRVGAIRAAL 280 (432)
Q Consensus 269 MD-GrV~aIR~aL 280 (432)
-| -.|..+.+.+
T Consensus 188 ~~~~ei~~~~~~~ 200 (294)
T TIGR02319 188 LDVEEMKRVRDEI 200 (294)
T ss_pred CCHHHHHHHHHhc
Confidence 54 3344444444
No 168
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=63.85 E-value=21 Score=38.44 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhh-------hhhCCCC-
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd-------Aa~Sap~- 314 (432)
-|-+.+++++..++..|.|+|= |.+++.|-. |.||++ |++.+-.
T Consensus 158 lsp~~~A~~~~~~~~GGvD~IK----------------DDE~l~~~~------------~~p~~~Rv~~~~~a~~~a~~e 209 (450)
T cd08212 158 LSAKNYGRVVYECLRGGLDFTK----------------DDENINSQP------------FMRWRDRFLFVAEAVNKAQAE 209 (450)
T ss_pred CCHHHHHHHHHHHHccCCcccc----------------cCccCCCCC------------CCCHHHHHHHHHHHHHHHHHh
Confidence 4677899999999999999873 344443322 233332 1111111
Q ss_pred CCCcccccccccCCCCC-HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh---hCCCCeEEEE-echhhHHHHHHH
Q 014017 315 FGDKKTYVIRVIELYAN-YREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---KYPLPIAAYQ-VSGEYSMIKAGG 389 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N-~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~---~~~lPvaaYq-VSGEYaMikaAa 389 (432)
-|-|+-|-.| |-+. ..|.++.+..=+++|++.+||=--. =++.++.+++ ..++||-+-- .+|-|. ..-
T Consensus 210 TG~~~~y~~N---iTa~~~~em~~ra~~a~~~G~~~~mv~~~~-G~~~l~~l~~~a~~~~l~IhaHrA~~ga~~---r~~ 282 (450)
T cd08212 210 TGEVKGHYLN---VTAGTMEEMYKRAEFAKELGSPIIMHDLLT-GFTAIQSLAKWCRDNGMLLHLHRAGHATYD---RQK 282 (450)
T ss_pred hCCcceeecc---ccCCCHHHHHHHHHHHHHhCCCeEeeeccc-ccchHHHHHHHhhhcCceEEeccccceecc---cCc
Confidence 2778888888 2313 6899999998899999999998333 6788888887 6789986522 233221 111
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
..|+ +. .++ -+-+|=||||.|++
T Consensus 283 ~~Gi-s~--~vl--~kl~RLaGaD~ih~ 305 (450)
T cd08212 283 NHGI-HF--RVL--AKWLRLSGVDHIHA 305 (450)
T ss_pred cCCc-CH--HHH--HHHHHHcCCCcccc
Confidence 2343 22 334 33457799999875
No 169
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=63.51 E-value=11 Score=34.15 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCccceeec
Q 014017 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV---~aIR~aLD~~Gf~~v~ImS 292 (432)
.|.|.+.+.+.|..+ +||+|+=|.||-... ..+.+.|.++|+.++.||-
T Consensus 35 ~~v~~e~~v~aa~~~---~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~viv 86 (128)
T cd02072 35 VLSPQEEFIDAAIET---DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV 86 (128)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEE
Confidence 678889999988755 999999999998875 5566788899997787763
No 170
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=62.89 E-value=19 Score=36.39 Aligned_cols=66 Identities=27% Similarity=0.330 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC---CCeecCCCCCCch--
Q 014017 199 VPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG---ADVVSPSDMMDGR-- 272 (432)
Q Consensus 199 v~raIr~iK~~fP-dl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AG---ADiVAPSDMMDGr-- 272 (432)
+.+|++..|+.+| +.-|+. ++ |+.++ ..+.|+..+++| +|+| |.|..
T Consensus 170 ~~~A~~~~~~~~p~~~~i~v---ev-----------------dt~~~---~v~eal~~~~~~~~~~d~I----~lDn~~~ 222 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIA---LI-----------------DTFND---EKEEALKAAKALGDKLDGV----RLDTPSS 222 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEE---EE-----------------eecCc---chHHHHHHHHHhCCCCcEE----EECCCCC
Confidence 6789999999999 422221 11 11111 235677777775 8888 44443
Q ss_pred --------HHHHHHHHHHCCCccceee
Q 014017 273 --------VGAIRAALDAEGFQHVSIM 291 (432)
Q Consensus 273 --------V~aIR~aLD~~Gf~~v~Im 291 (432)
+..+|++|+..|+.++.|.
T Consensus 223 ~~G~~~~~~~~~~~~l~~~g~~~~~ie 249 (302)
T cd01571 223 RRGVFRYLIREVRWALDIRGYKHVKIF 249 (302)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999999999988666544
No 171
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=62.84 E-value=26 Score=41.02 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
+-+-++|+++.+.||.-+-+|-- +|.=.-+..||.+.++.- =++.+|+| ||.+ |++.
T Consensus 630 nVi~~Fvkqaa~~GIDvFRiFDs-------------LNwv~~M~vaidAV~e~g----kv~EatiC-YTGD----ildp- 686 (1149)
T COG1038 630 NVIREFVKQAAKSGIDVFRIFDS-------------LNWVEQMRVAIDAVREAG----KVAEATIC-YTGD----ILDP- 686 (1149)
T ss_pred HHHHHHHHHHHhcCccEEEeehh-------------hcchhhhhhHHHHHHhcC----CeEEEEEE-eccc----cCCC-
Confidence 34778899999999998888753 222122456888888774 46777887 6644 4432
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD 281 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD 281 (432)
+.-. =||+...+.|-..-++||||++--||-- ==|+++|+..|
T Consensus 687 ~r~k--Y~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~d 737 (1149)
T COG1038 687 GRKK--YTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETVD 737 (1149)
T ss_pred Cccc--ccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhcC
Confidence 2111 1899999999999999999999999853 23667776653
No 172
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=62.80 E-value=20 Score=35.10 Aligned_cols=95 Identities=11% Similarity=0.169 Sum_probs=61.3
Q ss_pred CCCCCHHHHHHHHHhchhcCCcEEEEcCCC-------chhHHHHHHHhhCCCC-eEEEEechhhHHHHHHHHC--CCchh
Q 014017 327 ELYANYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKYPLP-IAAYQVSGEYSMIKAGGAL--KMIDE 396 (432)
Q Consensus 327 ~~p~N~~EAlre~~~Di~EGAD~lMVKPal-------~YLDII~~vk~~~~lP-vaaYqVSGEYaMikaAa~~--G~id~ 396 (432)
....|.+|.+.++..=..+|||+|=.-=.. ...++++.+++. ++| ++.|--..|..+++.+.+. .++|-
T Consensus 27 i~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~-~~p~I~T~R~~~~~~~l~~a~~~~~d~vDI 105 (229)
T PRK01261 27 IFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEM-DIDYIFTYRGVDARKYYETAIDKMPPAVDL 105 (229)
T ss_pred eCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhc-CCCEEEEEcCCCHHHHHHHHHhhCCCEEEE
Confidence 346777888877776667899997433221 135666666665 555 5778866677888888764 35554
Q ss_pred hHHHHHHHHHHHHcCccEeehhcHHHH
Q 014017 397 QRVMMESLMCLRRAGADIILTYFALQA 423 (432)
Q Consensus 397 ~~~~~EsL~~ikRAGAd~IiTYfA~~~ 423 (432)
+--.+..+ ..++.|..+|+||+++..
T Consensus 106 El~~~~~~-~~~~~~~kvIvS~Htp~~ 131 (229)
T PRK01261 106 DINLIGKL-EFRPRNTMLMVSYHTNNS 131 (229)
T ss_pred Ecccchhh-hhhcCCCeEEEEeCCCCH
Confidence 41111223 346789999999998744
No 173
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.65 E-value=5.5 Score=37.46 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=52.9
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTsh 227 (432)
+...|++.+ .+.+.++.+.+.|+..|.|- |..|. ..|+. +.+-++.+|+.+|++.| .-|
T Consensus 129 ~~~~~~~~~-~~~~~~~~~~~~g~~~i~l~--------Dt~G~--~~P~~-v~~lv~~~~~~~~~~~l---------~~H 187 (237)
T PF00682_consen 129 EDASRTDPE-ELLELAEALAEAGADIIYLA--------DTVGI--MTPED-VAELVRALREALPDIPL---------GFH 187 (237)
T ss_dssp TTTGGSSHH-HHHHHHHHHHHHT-SEEEEE--------ETTS---S-HHH-HHHHHHHHHHHSTTSEE---------EEE
T ss_pred cccccccHH-HHHHHHHHHHHcCCeEEEee--------CccCC--cCHHH-HHHHHHHHHHhccCCeE---------EEE
Confidence 334577775 69999999999999988761 11221 22222 56789999999998332 347
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
+|+-. |- -...++.-.+||||+|--|
T Consensus 188 ~Hnd~----Gl---------a~An~laA~~aGa~~id~t 213 (237)
T PF00682_consen 188 AHNDL----GL---------AVANALAALEAGADRIDGT 213 (237)
T ss_dssp EBBTT----S----------HHHHHHHHHHTT-SEEEEB
T ss_pred ecCCc----cc---------hhHHHHHHHHcCCCEEEcc
Confidence 77622 21 1234677789999998444
No 174
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=62.35 E-value=22 Score=35.94 Aligned_cols=146 Identities=23% Similarity=0.312 Sum_probs=86.4
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccce-----eecchhhhccccchhhhhhhhCCCC-----CCCccc
Q 014017 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS-----IMSYTAKYASSFYGPFREALDSNPR-----FGDKKT 320 (432)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~-----ImSYSaKyASsfYGPFRdAa~Sap~-----~gDRkt 320 (432)
.|....+||+|+|.=-|.+ +.--.||.+|. -|-|-+| -.|.++..+.- |+ |
T Consensus 28 ~A~~~d~agvD~iLVGDSl---------gmv~~G~~sT~~vtld~mi~h~~-------aV~Rga~~~~vv~DmPf~---s 88 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSL---------GMVVLGYDSTLPVTLDEMIYHTK-------AVRRGAPNAFVVADMPFG---S 88 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTH---------HHHTT--SSSTT--HHHHHHHHH-------HHHHH-TSSEEEEE--TT---S
T ss_pred HHHHHHHcCCCEEEeCCcH---------HHheeCCCCCcCcCHHHHHHHHH-------HHHhcCCCceEEecCCcc---c
Confidence 3455567899998877764 22234553322 1333222 23444433332 44 7
Q ss_pred ccccccCCCCCHHHHHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEE--------echhhHHHHHHHHC
Q 014017 321 YVIRVIELYANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ--------VSGEYSMIKAGGAL 391 (432)
Q Consensus 321 YQmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYq--------VSGEYaMikaAa~~ 391 (432)
||-+ .++|++.+.+=++ -|||+|-+.-+.-..|+|+.+.+ -.+||.+-- --|-|.. +
T Consensus 89 y~~s-------~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~------q 154 (261)
T PF02548_consen 89 YQAS-------PEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRV------Q 154 (261)
T ss_dssp STSS-------HHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--------C
T ss_pred ccCC-------HHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHH-CCCcEEEEecCchhheeccCCceE------E
Confidence 8765 5999999999888 89999999999888999999887 579998631 1233321 1
Q ss_pred CC-chhhHHHHHHHHHHHHcCccEee-hhcHHHHHHHHhc
Q 014017 392 KM-IDEQRVMMESLMCLRRAGADIIL-TYFALQAARCLCG 429 (432)
Q Consensus 392 G~-id~~~~~~EsL~~ikRAGAd~Ii-TYfA~~~a~wL~~ 429 (432)
|= -++.+-++|--.++-.|||-.|+ .---.++|+++.+
T Consensus 155 Gk~~~~a~~l~~~A~ale~AGaf~ivlE~vp~~la~~It~ 194 (261)
T PF02548_consen 155 GKTAEEAEKLLEDAKALEEAGAFAIVLECVPAELAKAITE 194 (261)
T ss_dssp STSHHHHHHHHHHHHHHHHHT-SEEEEESBBHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHcCccEEeeecCHHHHHHHHHH
Confidence 21 13446788889999999998875 3444556666543
No 175
>PRK05926 hypothetical protein; Provisional
Probab=62.34 E-value=14 Score=38.54 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
-+.-|.++.+ ++++.++++ +.|++.|.|-+-..++ + +-..+...++.||+.||++.+- .+|.
T Consensus 93 ~~~~~~ls~e-eI~~~a~~a-~~G~~ei~iv~G~~p~---------~-~~e~~~e~i~~Ik~~~p~i~i~------a~s~ 154 (370)
T PRK05926 93 DPKGWFYTPD-QLVQSIKEN-PSPITETHIVAGCFPS---------C-NLAYYEELFSKIKQNFPDLHIK------ALTA 154 (370)
T ss_pred CcccccCCHH-HHHHHHHHH-hcCCCEEEEEeCcCCC---------C-CHHHHHHHHHHHHHhCCCeeEE------ECCH
Confidence 4566788886 699999999 7999999986521211 1 1234678899999999998753 2211
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHH-cCC--------CeecCCCCC-CchHHHHHHHHHHCCCc
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQAR-AGA--------DVVSPSDMM-DGRVGAIRAALDAEGFQ 286 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~-AGA--------DiVAPSDMM-DGrV~aIR~aLD~~Gf~ 286 (432)
.=-|.+- ....+..+++++.|.+.-+..-- .|+ +.++|.... |-++..+|. +.+.|+.
T Consensus 155 ~Ei~~~~-~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~-a~~~Gi~ 222 (370)
T PRK05926 155 IEYAYLS-KLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKT-AHSLGIP 222 (370)
T ss_pred HHHHHHH-hhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCc
Confidence 0001111 12334566777776654442222 123 235565554 567777765 4577873
No 176
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=62.20 E-value=1.3e+02 Score=30.79 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHcCCCeEEE----eecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHH--CCCeEEEeeecccCCCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVL----FPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDR--YPDLVIYTDVALDPYSSDG 228 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L----Fgvi~~~~Kd~~gs~---A~n~~g~v~raIr~iK~~--fPdl~IitDVcLc~YTshG 228 (432)
++.+.|+++.+.|+-.|.| ||+ | +|.. ...+-.-..+=|++.++. -+|++|++=+ |.|..+
T Consensus 94 ~v~r~V~~~~~aGaagi~IEDq~~pK-----~--cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~~- 163 (292)
T PRK11320 94 NIARTVKSMIKAGAAAVHIEDQVGAK-----R--CGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMART--DALAVE- 163 (292)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCcc-----c--cCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEec--Cccccc-
Confidence 5788899999999999888 221 1 1211 111112234455555554 4788888532 223221
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHH
Q 014017 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282 (432)
Q Consensus 229 HcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~ 282 (432)
| -|+++++ |..|++||||+|-+-.+=+ ...||+.-.+
T Consensus 164 --------g---~deAI~R----a~aY~eAGAD~ifi~~~~~--~~~i~~~~~~ 200 (292)
T PRK11320 164 --------G---LDAAIER----AQAYVEAGADMIFPEAMTE--LEMYRRFADA 200 (292)
T ss_pred --------C---HHHHHHH----HHHHHHcCCCEEEecCCCC--HHHHHHHHHh
Confidence 2 2555555 7899999999998876543 5666655543
No 177
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=62.04 E-value=22 Score=34.71 Aligned_cols=89 Identities=19% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTsh 227 (432)
|...|++.+ .+.+.++++.+.|+..|.| +|..|. ..|+ -+.+-++.||+.+|++ |+. ..-|
T Consensus 135 ~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~----~i~---l~~H 195 (268)
T cd07940 135 EDATRTDLD-FLIEVVEAAIEAGATTINI--------PDTVGY--LTPE-EFGELIKKLKENVPNI----KVP---ISVH 195 (268)
T ss_pred ecCCCCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCC--CCHH-HHHHHHHHHHHhCCCC----cee---EEEE
Confidence 445567774 5889999999999987655 334443 2222 2456889999999873 332 2457
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
+|+-.=- =..-++.-.++||++|=-|-.
T Consensus 196 ~Hn~~Gl-------------A~An~laAi~aG~~~iD~s~~ 223 (268)
T cd07940 196 CHNDLGL-------------AVANSLAAVEAGARQVECTIN 223 (268)
T ss_pred ecCCcch-------------HHHHHHHHHHhCCCEEEEEee
Confidence 7764321 112234445789999855543
No 178
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=61.55 E-value=71 Score=30.24 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=73.2
Q ss_pred ccccCCCCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh--
Q 014017 323 IRVIELYANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE-- 396 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~-- 396 (432)
+.|+.-..|..|++..+ .+...|+++.= |++.-+|+++.+++++ +.++..+....+.+.+..+.+.|.--.
T Consensus 26 ~~vv~~a~~~~~~l~~~---~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~ 102 (211)
T COG2197 26 LEVVGEASNGEEALDLA---RELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLL 102 (211)
T ss_pred CEEEEEeCCHHHHHHHh---hhcCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEEEEeccCCHHHHHHHHHcCCCEEEe
Confidence 45556677888887762 45678888876 8888999999999766 589999999999999999988875321
Q ss_pred ----hHHHHHHHHHHHHcCccEeehhcHHHHHHHHh
Q 014017 397 ----QRVMMESLMCLRRAGADIILTYFALQAARCLC 428 (432)
Q Consensus 397 ----~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~ 428 (432)
.+.+.|++.+...-| +||.++++.-+.
T Consensus 103 K~~~~~~l~~ai~~v~~G~-----~~~~~~~~~~~~ 133 (211)
T COG2197 103 KDASPEELVEAIRAVAAGG-----TYLPPDIARKLA 133 (211)
T ss_pred CCCCHHHHHHHHHHHHCCC-----eEeCHHHHHHHH
Confidence 244666666665544 788887776543
No 179
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=61.39 E-value=38 Score=33.49 Aligned_cols=116 Identities=22% Similarity=0.318 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd-l~IitDVcLc~YTshGHcGIl~~~ 236 (432)
.+...+..+.++||+.|++..=-|+..-|.....-++-+ ....-|+.|++.+.+ ..|- ++..| .||...-
T Consensus 86 ~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~~~~~~~~~~-~~~~Li~~i~~~~~~~~~i~--va~~P---~~hp~~~--- 156 (287)
T PF02219_consen 86 ALQSDLLGAHALGIRNILALTGDPPKGGDHFAKPVFDFD-YALDLIRLIRQEYGDDFSIG--VAGYP---EGHPEAP--- 156 (287)
T ss_dssp HHHHHHHHHHHTT--EEEEESS-TSTTSSS----TTS-S-SHHHHHHHHHHHHGGGSEEE--EEE-T---THHTTCS---
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCCCccccCCCchhH-HHHHHHHHHHHhcCcccccc--cccCC---CCCcccc---
Confidence 588889999999999999865322211111112222211 245678888877665 3332 33334 5666211
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCcccee
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI 290 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~I 290 (432)
+-+.-++.|.+ -.+||||.+=.-=--| ..+....+.+.+.|. +++|
T Consensus 157 ---~~~~~~~~l~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~-~~pI 203 (287)
T PF02219_consen 157 ---DFEAELKRLKK----KIDAGADFIITQPFFDAEAFERFLDRLREAGI-DVPI 203 (287)
T ss_dssp ---SHHHHHHHHHH----HHHTTESEEEEEE-SSHHHHHHHHHHHHHTTH-TSEE
T ss_pred ---CHHHHHHHHHH----HHHCCCCEEeccccCCHHHHHHHHHHHHHcCC-CCcE
Confidence 12333444433 3589999988877788 566778888888886 4544
No 180
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=60.82 E-value=6.2 Score=36.37 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCeEEEe---eec-ccCCCCCCcceeecCCCccccHHH
Q 014017 202 TIWLLKDRYPDLVIYT---DVA-LDPYSSDGHDGIVREDGVIMNDET 244 (432)
Q Consensus 202 aIr~iK~~fPdl~Iit---DVc-Lc~YTshGHcGIl~~~g~IdND~T 244 (432)
-++-| +.+|++.|++ |+| -|||.+|+||| + ++.+++|.+
T Consensus 32 I~~rL-~~ge~i~lV~g~DDIC~~cp~~~~~~C~--~-e~~~~r~r~ 74 (135)
T COG3543 32 IAERL-KAGEDIKLVDGPDDICVSCPCKIDNHCG--D-ESSVERDRI 74 (135)
T ss_pred HHHHh-hcCCCeEEEecccchhhcCcCCCCCccc--c-chhHHHHHH
Confidence 33444 4578877765 888 79999999999 2 366666653
No 181
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=60.76 E-value=18 Score=37.36 Aligned_cols=54 Identities=13% Similarity=0.257 Sum_probs=40.4
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~ 214 (432)
+.++.+ +++++++.+.+.|++.|.|.|=-++. ..+-.-+.++++.||+.||++.
T Consensus 102 ~~ls~e-EI~~~a~~~~~~Gv~~i~lvgGe~p~---------~~~~e~l~~~i~~Ik~~~p~i~ 155 (371)
T PRK09240 102 KTLDEE-EIEREMAAIKKLGFEHILLLTGEHEA---------KVGVDYIRRALPIAREYFSSVS 155 (371)
T ss_pred ccCCHH-HHHHHHHHHHhCCCCEEEEeeCCCCC---------CCCHHHHHHHHHHHHHhCCCce
Confidence 677885 69999999999999999886522221 1222467889999999998753
No 182
>PRK07475 hypothetical protein; Provisional
Probab=60.52 E-value=1.2e+02 Score=29.65 Aligned_cols=128 Identities=17% Similarity=0.089 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC--------------------CCCchHHHHHHHHHHCCCccceeecchhhhccccc
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSD--------------------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSD--------------------MMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfY 302 (432)
.-++.+.+.+-.+.++|||.|+-+. |..-.|.++++.+ .+.++|+|++..+ +.+|
T Consensus 62 ~~~~~l~~aa~~L~~~G~d~I~~~Cgt~~~~~~~l~~~~~VPv~~ss~~~v~~l~~~~--~~~~kIGILtt~~---t~l~ 136 (245)
T PRK07475 62 SLLDAFVAAARELEAEGVRAITTSCGFLALFQRELAAALGVPVATSSLLQVPLIQALL--PAGQKVGILTADA---SSLT 136 (245)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEechHHHHHHHHHHHHHcCCCEeccHHHHHHHHHHhc--cCCCeEEEEeCCc---hhhh
Confidence 3578888999999999999988665 1111233333322 2457899998744 4688
Q ss_pred hhhhhhhhCCC------CCCCcccccccccCC-------CCCHHHHHHHHHhch---hcCCcEEEEcCCCchhHHHHHHH
Q 014017 303 GPFREALDSNP------RFGDKKTYVIRVIEL-------YANYREALVEAQADE---SEGADILLVKPGLPYLDVIRLLR 366 (432)
Q Consensus 303 GPFRdAa~Sap------~~gDRktYQmd~~~~-------p~N~~EAlre~~~Di---~EGAD~lMVKPal~YLDII~~vk 366 (432)
.-|=++++-.+ ..|....-.+.-+++ ....++.+.++...+ ..|+|.|+.-=. ..-.+...+.
T Consensus 137 ~~~l~~~Gi~~~~~~~~~~g~e~~~~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~daIvL~CT-eLp~~~~~le 215 (245)
T PRK07475 137 PAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILENRGELDNEAAEQEVVAAARALLERHPDIGAIVLECT-NMPPYAAAIQ 215 (245)
T ss_pred HHHHHhCCCCCCCccccccCcccchHHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCCCEEEEcCc-ChHHHHHHHH
Confidence 77766666431 223211111110000 111134455555555 459999987622 2234556666
Q ss_pred hhCCCCeEEE
Q 014017 367 DKYPLPIAAY 376 (432)
Q Consensus 367 ~~~~lPvaaY 376 (432)
+.+++||.-.
T Consensus 216 ~~~glPViDs 225 (245)
T PRK07475 216 RATGLPVFDI 225 (245)
T ss_pred HhcCCCEEeH
Confidence 7788898653
No 183
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=60.41 E-value=38 Score=34.20 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcC---CC-----chhHHHHHHHhhCCCCeEE
Q 014017 329 YANYREALVEAQADESEGADILLVKP---GL-----PYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKP---al-----~YLDII~~vk~~~~lPvaa 375 (432)
..|.++|.+.. +.|+|+|.|.. +. +-++++.++++.+++||.+
T Consensus 116 v~s~~~a~~a~----~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPvia 166 (307)
T TIGR03151 116 VASVALAKRME----KAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIA 166 (307)
T ss_pred cCCHHHHHHHH----HcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEE
Confidence 45667765443 45999999843 11 3489999999999999876
No 184
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=60.29 E-value=1.5e+02 Score=27.72 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=92.5
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcG 231 (432)
+++. +.++.++.+.+.|+..+.++.. +. .+...+.-...++.|++.++ +-|+
T Consensus 26 ~~~~--dp~~~a~~~~~~g~d~l~v~dl-~~---------~~~~~~~~~~~i~~i~~~~~-~pv~--------------- 77 (234)
T cd04732 26 VYSD--DPVEVAKKWEEAGAKWLHVVDL-DG---------AKGGEPVNLELIEEIVKAVG-IPVQ--------------- 77 (234)
T ss_pred EECC--CHHHHHHHHHHcCCCEEEEECC-Cc---------cccCCCCCHHHHHHHHHhcC-CCEE---------------
Confidence 5554 3688888999999999999753 21 12223444668888888752 2222
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhh
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD 310 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~ 310 (432)
+ +|-|..-+.++.+. ++|||.|. .+.++ .....++++..+.|- +-.+.|-..|-. .++.
T Consensus 78 -~--~GgI~~~e~~~~~~-------~~Gad~vvigs~~l-~dp~~~~~i~~~~g~-~~i~~sid~~~~-~~~~------- 137 (234)
T cd04732 78 -V--GGGIRSLEDIERLL-------DLGVSRVIIGTAAV-KNPELVKELLKEYGG-ERIVVGLDAKDG-KVAT------- 137 (234)
T ss_pred -E--eCCcCCHHHHHHHH-------HcCCCEEEECchHH-hChHHHHHHHHHcCC-ceEEEEEEeeCC-EEEE-------
Confidence 1 24455545544443 48999875 44443 445667777776553 233344333321 1110
Q ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcC-------CCchhHHHHHHHhhCCCCeEE
Q 014017 311 SNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKP-------GLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 311 Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKP-------al~YLDII~~vk~~~~lPvaa 375 (432)
. |-++.+.. +..|.+++. .+-|||.+++=. ..+-++.|+++++.+++|+.+
T Consensus 138 --~--~~~~~~~~-------~~~~~~~~~---~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~ 195 (234)
T cd04732 138 --K--GWLETSEV-------SLEELAKRF---EELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIA 195 (234)
T ss_pred --C--CCeeecCC-------CHHHHHHHH---HHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEE
Confidence 0 11122222 334544443 356899776532 124589999999999999876
No 185
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=60.29 E-value=2.8e+02 Score=30.93 Aligned_cols=193 Identities=21% Similarity=0.229 Sum_probs=104.3
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT 225 (432)
+.++..|++.+ +.++.++.+.+.|+.++=.-|- ..-|..- .-.+++ --+.++.|++..|+.-+.+ ||-
T Consensus 11 Qs~~~~~~~t~-dkl~ia~~L~~~Gv~~IE~~GG---atfd~~~-~f~~e~--~~e~l~~l~~~~~~~~l~~---L~R-- 78 (582)
T TIGR01108 11 QSLFATRMRTE-DMLPIAEKLDDVGYWSLEVWGG---ATFDACI-RFLNED--PWERLRELKKALPNTPLQM---LLR-- 78 (582)
T ss_pred cccCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccccccc-ccCCCC--HHHHHHHHHHhCCCCEEEE---EEc--
Confidence 35566688885 6999999999999999988531 1111100 001122 2468899999889855542 210
Q ss_pred CCCcceeecCCCcc-ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCccceeecchhhhcccc
Q 014017 226 SDGHDGIVREDGVI-MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSF 301 (432)
Q Consensus 226 shGHcGIl~~~g~I-dND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsf 301 (432)
|... -|+. --|.-++.-.+.|+ ++|.|+|--.|-+ +.-..+|+.+ .++|+.-..-++|+.
T Consensus 79 --g~N~----~G~~~ypddvv~~~v~~a~---~~Gvd~irif~~lnd~~n~~~~i~~a-k~~G~~v~~~i~~t~------ 142 (582)
T TIGR01108 79 --GQNL----LGYRHYADDVVERFVKKAV---ENGMDVFRIFDALNDPRNLQAAIQAA-KKHGAHAQGTISYTT------ 142 (582)
T ss_pred --cccc----cccccCchhhHHHHHHHHH---HCCCCEEEEEEecCcHHHHHHHHHHH-HHcCCEEEEEEEecc------
Confidence 1100 0111 12334444455554 6699986443333 3333344333 456763333356643
Q ss_pred chhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhhCCCCeEE
Q 014017 302 YGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 302 YGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~~~lPvaa 375 (432)
.|+ .+ +.-.-+..+++ ++-|||.|-+|=-.-+ -++++.+|+++++|+.
T Consensus 143 -~p~-----------------~~----~~~~~~~~~~~---~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~- 196 (582)
T TIGR01108 143 -SPV-----------------HT----LETYLDLAEEL---LEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVH- 196 (582)
T ss_pred -CCC-----------------CC----HHHHHHHHHHH---HHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceE-
Confidence 121 13 22223333333 2359999988743322 5799999999999985
Q ss_pred EEechhh----HHHHHHHHCC
Q 014017 376 YQVSGEY----SMIKAGGALK 392 (432)
Q Consensus 376 YqVSGEY----aMikaAa~~G 392 (432)
+|--=.+ +-..+|.++|
T Consensus 197 ~H~Hnt~Gla~An~laAveaG 217 (582)
T TIGR01108 197 LHSHATTGMAEMALLKAIEAG 217 (582)
T ss_pred EEecCCCCcHHHHHHHHHHhC
Confidence 6663322 2233456666
No 186
>smart00642 Aamy Alpha-amylase domain.
Probab=60.26 E-value=51 Score=30.36 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeeccc
Q 014017 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALD 222 (432)
Q Consensus 155 i~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc 222 (432)
+. ++.+++..+.++|+++|.|=|+.+. .....+...|++-+. +.+.|+.++++ .|-||.|+-+.
T Consensus 18 ~~-gi~~~l~yl~~lG~~~I~l~Pi~~~-~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~N 93 (166)
T smart00642 18 LQ-GIIEKLDYLKDLGVTAIWLSPIFES-PQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHAR--GIKVILDVVIN 93 (166)
T ss_pred HH-HHHHHHHHHHHCCCCEEEECcceeC-CCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHC--CCEEEEEECCC
Confidence 53 6889999999999999999775221 111112233333222 35566666664 79999999986
Q ss_pred CCCC
Q 014017 223 PYSS 226 (432)
Q Consensus 223 ~YTs 226 (432)
....
T Consensus 94 H~~~ 97 (166)
T smart00642 94 HTSD 97 (166)
T ss_pred CCCC
Confidence 5544
No 187
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=60.26 E-value=29 Score=32.89 Aligned_cols=88 Identities=26% Similarity=0.359 Sum_probs=56.7
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCC-------chhHHHHHHHhhCCCCeEE-EEe---------c-hhh-HHHHHHHHC
Q 014017 331 NYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKYPLPIAA-YQV---------S-GEY-SMIKAGGAL 391 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal-------~YLDII~~vk~~~~lPvaa-YqV---------S-GEY-aMikaAa~~ 391 (432)
+..|++....... |||+|=.-=.+ .-.+.++.+++.+++|+.. |.- + .+| .+++.+.+.
T Consensus 11 ~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 88 (225)
T cd00502 11 LLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEALKL 88 (225)
T ss_pred CHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHHHH
Confidence 5677776665554 99997442111 1245677888877788754 221 1 233 566777776
Q ss_pred C--Cchhh---HHHHHHHHHHHHcCccEeehhcH
Q 014017 392 K--MIDEQ---RVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 392 G--~id~~---~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
| |+|-+ ..+.|.+...++.|..+|++|+-
T Consensus 89 ~~d~vDiEl~~~~~~~~~~~~~~~~~kiI~S~H~ 122 (225)
T cd00502 89 GPDYVDIELDSALLEELINSRKKGNTKIIGSYHD 122 (225)
T ss_pred CCCEEEEEecchHHHHHHHHHHhCCCEEEEEecc
Confidence 5 56655 23667777777899999999973
No 188
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.22 E-value=31 Score=33.40 Aligned_cols=60 Identities=13% Similarity=0.232 Sum_probs=47.4
Q ss_pred hHHHHHHHhhCCCCeE--EEE---echhhHHHHHHHHCCC---------chhhHHHHHHHHHHHHcCccEeehh
Q 014017 359 LDVIRLLRDKYPLPIA--AYQ---VSGEYSMIKAGGALKM---------IDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 359 LDII~~vk~~~~lPva--aYq---VSGEYaMikaAa~~G~---------id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+++++.+|+.+++|+. +|- ++|....++.+.+.|+ ++..+-..|.+..+++.|.+.|+.-
T Consensus 63 ~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v 136 (244)
T PRK13125 63 WPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFT 136 (244)
T ss_pred HHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 8999999988899984 332 8899999999999997 2212345688889999999998753
No 189
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=60.07 E-value=75 Score=30.40 Aligned_cols=62 Identities=23% Similarity=0.277 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eEEEee-----ecccCCCCCCcc
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTD-----VALDPYSSDGHD 230 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd-l~IitD-----VcLc~YTshGHc 230 (432)
+.+.+.++.+++-||+.+-+ . .|++. ..++|+.|+++||+ +.|-+= =-+...-..|=+
T Consensus 22 ~~~~~~~~a~~~gGi~~iEv----t--~~~~~----------~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~ 85 (206)
T PRK09140 22 DEALAHVGALIEAGFRAIEI----P--LNSPD----------PFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGR 85 (206)
T ss_pred HHHHHHHHHHHHCCCCEEEE----e--CCCcc----------HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCC
Confidence 36899999999999998766 1 23332 22399999999995 553322 223333466777
Q ss_pred eeec
Q 014017 231 GIVR 234 (432)
Q Consensus 231 GIl~ 234 (432)
+++.
T Consensus 86 fivs 89 (206)
T PRK09140 86 LIVT 89 (206)
T ss_pred EEEC
Confidence 7764
No 190
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=59.85 E-value=1.8e+02 Score=28.66 Aligned_cols=110 Identities=15% Similarity=0.259 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.+.+.+..+.++||+.|+++.=-|+..-|+....-|+ -...-|+.||+.++++.|. ..-| ..||.-.-
T Consensus 74 ~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~---~a~~Li~~i~~~~~~f~ig----~a~~-Peghp~~~---- 141 (272)
T TIGR00676 74 EIREILREYRELGIRHILALRGDPPKGEGTPTPGGFN---YASELVEFIRNEFGDFDIG----VAAY-PEKHPEAP---- 141 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCC---CHHHHHHHHHHhcCCeeEE----EEeC-CCCCCCCC----
Confidence 4888889999999999996543222111101111122 2455668888888865443 1222 33443321
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-HHHHHHHHHHCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-VGAIRAALDAEGF 285 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGr-V~aIR~aLD~~Gf 285 (432)
+.++-++.|. .-.+||||.+-.-=--|-. +...++.+.+.|.
T Consensus 142 --~~~~~~~~L~----~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi 184 (272)
T TIGR00676 142 --NLEEDIENLK----RKVDAGADYAITQLFFDNDDYYRFVDRCRAAGI 184 (272)
T ss_pred --CHHHHHHHHH----HHHHcCCCeEeeccccCHHHHHHHHHHHHHcCC
Confidence 1234455454 3457999988887777744 5567777778886
No 191
>PRK08508 biotin synthase; Provisional
Probab=59.23 E-value=39 Score=33.38 Aligned_cols=100 Identities=18% Similarity=0.120 Sum_probs=55.2
Q ss_pred ccceeecchhhhcc--ccchhhhhhhhCCCCCCCccccc-ccccCCCCCHHHHHHHHHhchhcCCcEE-EE----cC---
Q 014017 286 QHVSIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYV-IRVIELYANYREALVEAQADESEGADIL-LV----KP--- 354 (432)
Q Consensus 286 ~~v~ImSYSaKyAS--sfYGPFRdAa~Sap~~gDRktYQ-md~~~~p~N~~EAlre~~~Di~EGAD~l-MV----KP--- 354 (432)
+=++|++...-.++ +-|=.|+.-.+ ++-+.|. ++ | +|.+.++..=.+.|+.-+ +| .+
T Consensus 5 ~~~~i~~~~s~gC~~~C~FCa~~~~~~-----~~~~~y~~~s----~---eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~ 72 (279)
T PRK08508 5 FLCAISNISSGNCKEDCKYCTQSAHYK-----ADIKRYKRKD----I---EQIVQEAKMAKANGALGFCLVTSGRGLDDK 72 (279)
T ss_pred EEEEEeccccCCCCCCCcCCCCcccCC-----CCCccccCCC----H---HHHHHHHHHHHHCCCCEEEEEeccCCCCcc
Confidence 33566666554443 33333322111 1224566 56 5 444444443345687554 54 11
Q ss_pred -CCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 355 -GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 355 -al~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
..-|+|+++.+|+.+ .+.+.+- .|.++ .|.|..+|.||+|.+-
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~i~~s--------------~G~~~-----~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLHLIAC--------------NGTAS-----VEQLKELKKAGIFSYN 117 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcEEEec--------------CCCCC-----HHHHHHHHHcCCCEEc
Confidence 125699999999886 5655432 46665 4667778888887754
No 192
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=59.22 E-value=1.2e+02 Score=29.42 Aligned_cols=130 Identities=21% Similarity=0.288 Sum_probs=73.7
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcc
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRk 319 (432)
++++.++.||++|..| .-.+=+|.|+ .|...|+.|...+..=..+.+| | ||.
T Consensus 15 ~t~~~i~~lc~~A~~~-~~~avcv~p~-----~v~~a~~~l~~~~v~v~tVigF-------------------P-~G~-- 66 (211)
T TIGR00126 15 TTEEDIITLCAQAKTY-KFAAVCVNPS-----YVPLAKELLKGTEVRICTVVGF-------------------P-LGA-- 66 (211)
T ss_pred CCHHHHHHHHHHHHhh-CCcEEEeCHH-----HHHHHHHHcCCCCCeEEEEeCC-------------------C-CCC--
Confidence 5788899999999977 3333344443 5677777774222211122221 1 132
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc------h---hHHHHHHHhhC-CCCeEEEEechhhHHHHHHH
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVKPGLP------Y---LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~------Y---LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa 389 (432)
. ...--+.|++.=++.|||-|-+=+-.. | .+-|+.+++.. ++|+-+ + .
T Consensus 67 ---~-------~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv--I----------l 124 (211)
T TIGR00126 67 ---S-------TTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV--I----------I 124 (211)
T ss_pred ---C-------cHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE--E----------E
Confidence 1 112334455555678988775543322 2 23455555554 466655 1 3
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeehh--cH
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILTY--FA 420 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiTY--fA 420 (432)
+.|.++.++.. ..-.....+|||+|=|. |.
T Consensus 125 E~~~L~~~ei~-~a~~ia~eaGADfvKTsTGf~ 156 (211)
T TIGR00126 125 ETGLLTDEEIR-KACEICIDAGADFVKTSTGFG 156 (211)
T ss_pred ecCCCCHHHHH-HHHHHHHHhCCCEEEeCCCCC
Confidence 45666655443 66667789999999998 87
No 193
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=58.75 E-value=94 Score=31.37 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=82.2
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 014017 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 141 ~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVc 220 (432)
.++|.-++.+.+ +.. ++.+.++.+.++||+.|++-.=-|+ .-|..+.. +.--...|++||+.+.+. .-.=++
T Consensus 78 ~~~i~Hltc~d~-n~~-~i~~~l~~~~~~Gi~~ilaLrGDpp-~g~~~~~~----~~~s~dLv~lik~~~~~~-f~i~~A 149 (291)
T COG0685 78 IEPIPHLTCRDR-NRI-EIISILKGAAALGIRNILALRGDPP-AGDKPGGK----DLYSVDLVELIKKMRGGI-FDIGVA 149 (291)
T ss_pred CccceeecccCC-CHH-HHHHHHHHHHHhCCceEEEecCCCC-CCCCCCcc----ccCHHHHHHHHHHhcCCe-EEEEEE
Confidence 346777777776 664 6999999999999999998543232 12222221 445678999999888764 111244
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccceeec
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~ImS 292 (432)
++|+ ||.- .+ +-+.-+..|.+ --+||||.+-.-=.-| -.+..+++.+...|- +++|..
T Consensus 150 ~~Pe---~h~~--s~----~~~~d~~~lkr----Kv~aGAd~~iTQ~~fd~e~~~~~~~~~~~~g~-~~pI~~ 208 (291)
T COG0685 150 AYPE---GHPE--SK----DVKEDIKRLKR----KVDAGADFFITQFFFDVEAFERFAERVRAAGI-DIPIIP 208 (291)
T ss_pred eCCC---CCcc--ch----hhHHHHHHHHH----HHhcchHHHHHHHccCHHHHHHHHHHHHhcCC-CCCeee
Confidence 6666 3332 11 11222333332 2249999998887888 467889999998875 555443
No 194
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=58.72 E-value=40 Score=33.48 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC----CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY----PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESL 404 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~----~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL 404 (432)
+.|..|+.... +.|||+||+=| .+.+-++++.+.. ++|+.| -|-|+. |.+
T Consensus 188 v~t~eea~~A~----~~gaD~I~ld~--~~~e~l~~~v~~i~~~~~i~i~a---------------sGGIt~-----~ni 241 (269)
T cd01568 188 VETLEEAEEAL----EAGADIIMLDN--MSPEELKEAVKLLKGLPRVLLEA---------------SGGITL-----ENI 241 (269)
T ss_pred cCCHHHHHHHH----HcCCCEEEECC--CCHHHHHHHHHHhccCCCeEEEE---------------ECCCCH-----HHH
Confidence 77888876664 57999999976 4667777665543 456543 455664 456
Q ss_pred HHHHHcCccEeeh
Q 014017 405 MCLRRAGADIILT 417 (432)
Q Consensus 405 ~~ikRAGAd~IiT 417 (432)
..+..+|||.|-+
T Consensus 242 ~~~a~~Gad~Isv 254 (269)
T cd01568 242 RAYAETGVDVIST 254 (269)
T ss_pred HHHHHcCCCEEEE
Confidence 6788999999965
No 195
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=58.70 E-value=15 Score=36.61 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=53.4
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcG 231 (432)
|.+.+ .+.+.++++.+.|++.|.| +|..|. .+|. -+.+-++.+|+.+|++ +..-|+|+-
T Consensus 143 r~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~-~v~~l~~~l~~~~~~~---------~i~~H~Hnd 201 (280)
T cd07945 143 RDSPD-YVFQLVDFLSDLPIKRIML--------PDTLGI--LSPF-ETYTYISDMVKRYPNL---------HFDFHAHND 201 (280)
T ss_pred cCCHH-HHHHHHHHHHHcCCCEEEe--------cCCCCC--CCHH-HHHHHHHHHHhhCCCC---------eEEEEeCCC
Confidence 67775 6899999999999998666 222332 1222 2677889999999875 334577763
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
. | .=..-++.-.++|||+|--|=
T Consensus 202 ~----G---------la~AN~laA~~aGa~~vd~s~ 224 (280)
T cd07945 202 Y----D---------LAVANVLAAVKAGIKGLHTTV 224 (280)
T ss_pred C----C---------HHHHHHHHHHHhCCCEEEEec
Confidence 3 1 112235566789999876443
No 196
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=58.44 E-value=14 Score=33.03 Aligned_cols=49 Identities=29% Similarity=0.382 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCccceeec
Q 014017 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV---~aIR~aLD~~Gf~~v~ImS 292 (432)
.|.|.+..++.|+ +.+||+|.=|.+|.... ..+.++|.+.|..++.||.
T Consensus 38 ~~~s~e~~v~aa~---e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~viv 89 (132)
T TIGR00640 38 LFQTPEEIARQAV---EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVV 89 (132)
T ss_pred CCCCHHHHHHHHH---HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 3567777777776 66999999999998655 5566778888987777765
No 197
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=58.36 E-value=1.4e+02 Score=26.98 Aligned_cols=52 Identities=13% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC-CHHHHHHHHHHHC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG-LVPRTIWLLKDRY 210 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g-~v~raIr~iK~~f 210 (432)
|+++-+..- .+.+.++.+.+.|++.+-| +. ||.. +.++- +-.+.++.|++.+
T Consensus 4 ~~~~~~d~~-~~~~~~~~~~~~G~~~i~l-~~-----~d~~----~~~~~~~~~~~~~~i~~~~ 56 (211)
T cd00429 4 PSILSADFA-NLGEELKRLEEAGADWIHI-DV-----MDGH----FVPNLTFGPPVVKALRKHT 56 (211)
T ss_pred eeeecCCHH-HHHHHHHHHHHcCCCEEEE-ec-----ccCC----CCCccccCHHHHHHHHhhC
Confidence 455555554 5889999999999988766 32 3321 11222 2246788888765
No 198
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=58.28 E-value=69 Score=30.26 Aligned_cols=109 Identities=25% Similarity=0.238 Sum_probs=58.8
Q ss_pred HHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccc-cccccC
Q 014017 250 KQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTY-VIRVIE 327 (432)
Q Consensus 250 k~Avs~A~AGADiVAPSDMMDGrV~-aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktY-Qmd~~~ 327 (432)
.+|+.+++-|.++..=|-+-+...+ .|++.|.++|. ++...-+.....+.+|--.+ . -|+|+.. ...
T Consensus 41 NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI-~~~~~~~~~~~~t~~~~~~~-~------~~~~~~~~~~~--- 109 (284)
T cd01945 41 NAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGV-DTSFIVVAPGARSPISSITD-I------TGDRATISITA--- 109 (284)
T ss_pred HHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCC-CccceeecCCCCCccEEEEc-c------CCCceEEEecC---
Confidence 4777888899988776666666665 48999999997 44444343333233322111 0 1222211 111
Q ss_pred CCCCHHHHHHHHHhchhcCCcEEEEcCCC--chhHHHHHHHhhCCCC
Q 014017 328 LYANYREALVEAQADESEGADILLVKPGL--PYLDVIRLLRDKYPLP 372 (432)
Q Consensus 328 ~p~N~~EAlre~~~Di~EGAD~lMVKPal--~YLDII~~vk~~~~lP 372 (432)
..+. --..+...++-+.+|++.+-+.. .++++++.+|++ +.|
T Consensus 110 -~~~~-~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~-g~~ 153 (284)
T cd01945 110 -IDTQ-AAPDSLPDAILGGADAVLVDGRQPEAALHLAQEARAR-GIP 153 (284)
T ss_pred -CCCC-CCcccCCHHHhCcCCEEEEcCCCHHHHHHHHHHHHHc-CCC
Confidence 0000 00011112235889999998865 367777777763 444
No 199
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=58.15 E-value=48 Score=33.76 Aligned_cols=81 Identities=17% Similarity=0.302 Sum_probs=55.4
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhc-CCcEEEEcCCCch-------------------hHHHHHHHhhCCCCeEEEEe
Q 014017 319 KTYVIRVIELYANYREALVEAQADESE-GADILLVKPGLPY-------------------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~E-GAD~lMVKPal~Y-------------------LDII~~vk~~~~lPvaaYqV 378 (432)
-..|+ .+|.-|.+.++...++| |+|.|=+-=+-|. .+|++.+++..++||.+.-=
T Consensus 67 ~~vQl-----~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR 141 (333)
T PRK11815 67 VALQL-----GGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHR 141 (333)
T ss_pred EEEEE-----eCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEE
Confidence 34677 56666777777777776 8999854433332 58999999999999998631
Q ss_pred chhhHHHHHHHHCCCchh--hHHHHHHHHHHHHcCccEee
Q 014017 379 SGEYSMIKAGGALKMIDE--QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 379 SGEYaMikaAa~~G~id~--~~~~~EsL~~ikRAGAd~Ii 416 (432)
.||-++ ..-+.|.+..+..+|+|.|+
T Consensus 142 ------------~g~~~~~t~~~~~~~~~~l~~aG~d~i~ 169 (333)
T PRK11815 142 ------------IGIDDQDSYEFLCDFVDTVAEAGCDTFI 169 (333)
T ss_pred ------------eeeCCCcCHHHHHHHHHHHHHhCCCEEE
Confidence 122222 12356777788889999986
No 200
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=58.10 E-value=26 Score=36.70 Aligned_cols=104 Identities=19% Similarity=0.275 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+-.+.++.+++.|+.-+.+=. . ....--+...|+.||+.||++.||+ |
T Consensus 108 ~~~er~~~L~~agvD~ivID~--a-----------~g~s~~~~~~ik~ik~~~~~~~via-------------------G 155 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDS--A-----------HGHSEHVIDMIKKIKKKFPDVPVIA-------------------G 155 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE---S-----------STTSHHHHHHHHHHHHHSTTSEEEE-------------------E
T ss_pred HHHHHHHHHHHcCCCEEEccc--c-----------CccHHHHHHHHHHHHHhCCCceEEe-------------------c
Confidence 468888899999997665521 1 1222345678999999999988883 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccc
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfY 302 (432)
.|-. .++|..+.++|||.|= -.|--|.|=..|..+ --|.-..+-+.-.++++..||
T Consensus 156 NV~T-------~e~a~~L~~aGad~vk-VGiGpGsiCtTr~v~-GvG~PQ~tAv~~~a~~a~~~~ 211 (352)
T PF00478_consen 156 NVVT-------YEGAKDLIDAGADAVK-VGIGPGSICTTREVT-GVGVPQLTAVYECAEAARDYG 211 (352)
T ss_dssp EE-S-------HHHHHHHHHTT-SEEE-ESSSSSTTBHHHHHH-SBSCTHHHHHHHHHHHHHCTT
T ss_pred ccCC-------HHHHHHHHHcCCCEEE-EeccCCccccccccc-ccCCcHHHHHHHHHHHhhhcc
Confidence 2211 3456668889999863 234444444444443 233322222233344444443
No 201
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=58.10 E-value=1.1e+02 Score=27.96 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=30.3
Q ss_pred hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 359 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 359 LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
-++|.++++ .++++.+|.|-- ..+.+..+.+.|+|.|+|-|
T Consensus 139 ~~~v~~~~~-~g~~v~~wtvn~-------------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 139 TELIASANK-LGLLSRIWTVND-------------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred HHHHHHHHH-CCCEEEEEeeCC-------------------hHHHHHHHHHcCCCEEeCCC
Confidence 356667666 689999999943 24556667788999999954
No 202
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=58.09 E-value=19 Score=35.76 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE-EeeecccCCCCCCcceeecCCC
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI-YTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~I-itDVcLc~YTshGHcGIl~~~g 237 (432)
.+.++.+++.|+..|-+|-.+++. .+...+...-..-..+.++++..|+..-.+.+ +++.--|||. |
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~-----------~ 144 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYE-----------G 144 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCC-----------C
Confidence 567899999999999887544431 12222211111112234556666665433222 1222234541 3
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD 270 (432)
.. +.+.+.+.+-...++|||.|.-.|+.=
T Consensus 145 ~~----~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (274)
T cd07938 145 EV----PPERVAEVAERLLDLGCDEISLGDTIG 173 (274)
T ss_pred CC----CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 33 344455555555679999999999864
No 203
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=57.90 E-value=25 Score=36.85 Aligned_cols=54 Identities=28% Similarity=0.524 Sum_probs=39.5
Q ss_pred hhcCCcEEEEcCCCch----hHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 343 ESEGADILLVKPGLPY----LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y----LDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.|+|+|.+-=+.-+ +|.|+.+|+.++ +||.+=+| .. .|....+.+||||.|.
T Consensus 117 ~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV---------------~T-----~e~a~~L~~aGad~vk 175 (352)
T PF00478_consen 117 VEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNV---------------VT-----YEGAKDLIDAGADAVK 175 (352)
T ss_dssp HHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE----------------S-----HHHHHHHHHTT-SEEE
T ss_pred HHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEeccc---------------CC-----HHHHHHHHHcCCCEEE
Confidence 4579999999877666 779999999997 99999988 12 2334447788999875
No 204
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.86 E-value=34 Score=34.56 Aligned_cols=65 Identities=23% Similarity=0.201 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ 406 (432)
..|.+|+.... +.|||+||.- . .-++-++++.+.. ++|+.| .|-|+++ .+..
T Consensus 196 v~tleea~eA~----~~gaD~I~LD-~-~~~e~l~~~v~~~~~~i~leA---------------sGGIt~~-----ni~~ 249 (277)
T PRK05742 196 VESLDELRQAL----AAGADIVMLD-E-LSLDDMREAVRLTAGRAKLEA---------------SGGINES-----TLRV 249 (277)
T ss_pred eCCHHHHHHHH----HcCCCEEEEC-C-CCHHHHHHHHHHhCCCCcEEE---------------ECCCCHH-----HHHH
Confidence 67877755443 7899999993 3 4566777776654 677765 4567754 4557
Q ss_pred HHHcCccEeehhc
Q 014017 407 LRRAGADIILTYF 419 (432)
Q Consensus 407 ikRAGAd~IiTYf 419 (432)
+..+|+|.|-+-.
T Consensus 250 ~a~tGvD~Isvg~ 262 (277)
T PRK05742 250 IAETGVDYISIGA 262 (277)
T ss_pred HHHcCCCEEEECh
Confidence 7889999997644
No 205
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=57.80 E-value=58 Score=31.75 Aligned_cols=48 Identities=17% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVc 220 (432)
-.++++++++.|..=|.|=+. .--.| -.+.+-++.||++| .++|+|+.
T Consensus 53 T~~ev~~l~~aGadIIAlDaT-----------~R~Rp-~~l~~li~~i~~~~--~l~MADis 100 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDAT-----------DRPRP-ETLEELIREIKEKY--QLVMADIS 100 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-S-----------SSS-S-S-HHHHHHHHHHCT--SEEEEE-S
T ss_pred CHHHHHHHHHcCCCEEEEecC-----------CCCCC-cCHHHHHHHHHHhC--cEEeeecC
Confidence 478999999999999888543 12344 66788999999999 99999964
No 206
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=57.77 E-value=48 Score=33.79 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+++.|++.|.+--. . |.. ..+.+.|+.||+++|++.|++ |
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~----~----G~~-----~~~~~~i~~ik~~~p~v~Vi~-------------------G 141 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSA----H----GHS-----VYVIEMIKFIKKKYPNVDVIA-------------------G 141 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECC----C----CCc-----HHHHHHHHHHHHHCCCceEEE-------------------C
Confidence 3578889999999988776211 1 111 235678999999999888874 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
.+.+ .++|....++|||+|.
T Consensus 142 ~v~t-------~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 142 NVVT-------AEAARDLIDAGADGVK 161 (325)
T ss_pred CCCC-------HHHHHHHHhcCCCEEE
Confidence 1211 2345566689999985
No 207
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=57.60 E-value=1.8e+02 Score=35.50 Aligned_cols=221 Identities=17% Similarity=0.154 Sum_probs=128.0
Q ss_pred hhHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-------C--CeEEEeeecccCC
Q 014017 157 HGLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-------P--DLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-------P--dl~IitDVcLc~Y 224 (432)
.++++.|.+ -++.|-.-+.- |+--+..+++ .|-+ ..-..+..+|+++.|+.. | ...|..+ +.||
T Consensus 64 Pe~I~~IH~~Yl~AGADII~TNTF~a~~~~L~~-ygl~-~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGS--IGP~ 139 (1229)
T PRK09490 64 PDVIEAIHRAYLEAGADIIETNTFNATTIAQAD-YGME-SLVYELNFAAARLAREAADEWTAKTPDKPRFVAGV--LGPT 139 (1229)
T ss_pred HHHHHHHHHHHHHHhCceeecCCCCCCHHHHhh-CChH-HHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEe--cCCC
Confidence 356777765 57889763332 6642211111 1111 001234456777776543 2 2566665 5677
Q ss_pred CCCCcc--eeec-CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-----hHHHHHHHHHHCCCccceee-cchh
Q 014017 225 SSDGHD--GIVR-EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-----RVGAIRAALDAEGFQHVSIM-SYTA 295 (432)
Q Consensus 225 TshGHc--GIl~-~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG-----rV~aIR~aLD~~Gf~~v~Im-SYSa 295 (432)
+...+. |+-. .-+.+.-|+-.+...+|+-.+.++|+|++.---|.|- =+.++|+.+++.|. +++|| |.+
T Consensus 140 g~~~sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllliETi~d~~EakAal~a~~~~~~~~~~-~lPv~vS~T- 217 (1229)
T PRK09490 140 NRTASISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILIETIFDTLNAKAAIFAVEEVFEELGV-RLPVMISGT- 217 (1229)
T ss_pred CcccccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEEeeeCCHHHHHHHHHHHHHHHhhcCC-CCeEEEEEE-
Confidence 644331 1111 0134777888899999999999999999999999983 45555665555563 56665 332
Q ss_pred hhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-c--hhHHHHHHHhhCCCC
Q 014017 296 KYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-P--YLDVIRLLRDKYPLP 372 (432)
Q Consensus 296 KyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-~--YLDII~~vk~~~~lP 372 (432)
|.|.- | .-++ +-.-|++..... ..|+|.|.+==++ | -..+|+.+.+..+.|
T Consensus 218 ---------~~d~~------G----r~ls-----G~~~ea~~~~l~--~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~p 271 (1229)
T PRK09490 218 ---------ITDAS------G----RTLS-----GQTTEAFWNSLR--HAKPLSIGLNCALGADELRPYVEELSRIADTY 271 (1229)
T ss_pred ---------EECCC------C----ccCC-----CCcHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCe
Confidence 11111 1 1122 111234433332 5688998887664 2 367777777777899
Q ss_pred eEEEEechhhHHHHHHHHCCCchh-hHHHHHHHHHHHHcC-ccEe
Q 014017 373 IAAYQVSGEYSMIKAGGALKMIDE-QRVMMESLMCLRRAG-ADII 415 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G~id~-~~~~~EsL~~ikRAG-Ad~I 415 (432)
+.+|-=+|.=. ..|.+|+ .+.+-|.+..+.+.| +.+|
T Consensus 272 i~vyPNAGlP~------~~~~yd~tPe~~a~~~~~~~~~G~v~II 310 (1229)
T PRK09490 272 VSAHPNAGLPN------AFGEYDETPEEMAAQIGEFAESGFLNIV 310 (1229)
T ss_pred EEEEeCCCCCC------CCCCCCCCHHHHHHHHHHHHHcCCCCEE
Confidence 99998877311 1123333 245678888888888 6665
No 208
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=57.56 E-value=20 Score=35.85 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=54.0
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g---~v~raIr~iK~~fPdl~IitDVc---Lc~YTshGHcGI 232 (432)
.+.++.+.+.|+..|.+|--+++. .+...+ .+.+- -+.++|+..|+.. +.+..-+| -|||
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~---~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~-------- 148 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASASEAFSQKNIN---CSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPY-------- 148 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCC--------
Confidence 556788999999999998544321 111111 11111 2345666666664 44444344 3555
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD 270 (432)
+|.. +.+.+.+.+-...++|||.|.-.|+.=
T Consensus 149 ---~~~~----~~~~~~~~~~~~~~~G~d~i~l~DT~G 179 (287)
T PRK05692 149 ---EGEV----PPEAVADVAERLFALGCYEISLGDTIG 179 (287)
T ss_pred ---CCCC----CHHHHHHHHHHHHHcCCcEEEeccccC
Confidence 2332 345666666666789999999888764
No 209
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=57.17 E-value=68 Score=31.11 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=54.3
Q ss_pred CHHHHHHHHHhchhcCCcEEEEc----------CCC---------------chhHHHHHHHhhCCCCeEE--E-Ee---c
Q 014017 331 NYREALVEAQADESEGADILLVK----------PGL---------------PYLDVIRLLRDKYPLPIAA--Y-QV---S 379 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVK----------Pal---------------~YLDII~~vk~~~~lPvaa--Y-qV---S 379 (432)
|.+.-++.+..=++.|||+|=+= |-. .++++++.+|+..++|+.. | +. .
T Consensus 12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~ 91 (242)
T cd04724 12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY 91 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence 44443333443344589998775 111 4689999999988889655 5 43 2
Q ss_pred hhhHHHHHHHHCCCc-----h-hhHHHHHHHHHHHHcCccEee
Q 014017 380 GEYSMIKAGGALKMI-----D-EQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 380 GEYaMikaAa~~G~i-----d-~~~~~~EsL~~ikRAGAd~Ii 416 (432)
|.=.+++.++++|.= | .-+-..+.+..+++.|.+.|+
T Consensus 92 G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred CHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEE
Confidence 445567777777751 1 112345677788888888875
No 210
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=57.02 E-value=62 Score=33.05 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YTs 226 (432)
..+-++.+.+.|...|-|.+- -| +.-+|+.|..--|.--++...++.||++.+ ++.|..=+..+.|-.
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 444555678899999998551 13 234599887766666778889999999984 677776666555521
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcC-CCeecCCC
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAG-ADVVSPSD 267 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AG-ADiVAPSD 267 (432)
+| ++-|+++ +.+-.+.++| +|+|.-|.
T Consensus 223 ---------~G-~~~~e~~----~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 223 ---------GG-LSPDEAL----EIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred ---------CC-CCHHHHH----HHHHHHHhcCCCCEEEeCC
Confidence 22 3445665 3455567898 89987753
No 211
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=56.98 E-value=16 Score=37.78 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHH----CCCccceeecchhhhcc--------c
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA----EGFQHVSIMSYTAKYAS--------S 300 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~----~Gf~~v~ImSYSaKyAS--------s 300 (432)
+..+..+.|.--=+.+.++=-.|.+||||||-..-----++.--+--|+. -++.-+.|===+|+-++ .
T Consensus 40 ~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaG 119 (311)
T COG0646 40 LKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAG 119 (311)
T ss_pred ccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecCCCcchhhHhhhChHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q ss_pred cchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHH------HHHhhCC----
Q 014017 301 FYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIR------LLRDKYP---- 370 (432)
Q Consensus 301 fYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~------~vk~~~~---- 370 (432)
=.||.+..+...|.| .-||+== ..+++|.++-. +++|||.+++. .|-|++. .+++.|.
T Consensus 120 siGPt~k~~~~~~~~--~v~fd~l----~~ay~eq~~~L---i~gG~D~iLiE---T~~D~l~~KaA~~a~~~~~~~~~~ 187 (311)
T COG0646 120 SIGPTNKTLSISPDF--AVTFDEL----VEAYREQVEGL---IDGGADLILIE---TIFDTLNAKAAVFAAREVFEELGV 187 (311)
T ss_pred eccCcCCcCCcCCcc--cccHHHH----HHHHHHHHHHH---HhCCCcEEEEe---hhccHHHHHHHHHHHHHHHHhcCC
Q ss_pred -CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 371 -LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 371 -lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
||+.+=.- ....|-.-.-+-+-+.+.+++.+|+|.+
T Consensus 188 ~LPv~~s~T---------i~~sG~tl~Gq~~~a~~~~l~~~~~~~v 224 (311)
T COG0646 188 RLPVMISGT---------ITDSGRTLSGQTIEAFLNSLEHLGPDAV 224 (311)
T ss_pred cccEEEEEE---------EecCceecCCCcHHHHHHHhhccCCcEE
No 212
>PRK07695 transcriptional regulator TenI; Provisional
Probab=56.30 E-value=52 Score=30.53 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=39.0
Q ss_pred hcCCcEEEEc--------CC--CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc
Q 014017 344 SEGADILLVK--------PG--LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 344 ~EGAD~lMVK--------Pa--l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd 413 (432)
+.|||+|+.= |+ ...++.++.+++.+++|+.| .|-++.+ .+..+..+|||
T Consensus 113 ~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia---------------~GGI~~~-----~~~~~~~~Ga~ 172 (201)
T PRK07695 113 KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIA---------------IGGITPE-----NTRDVLAAGVS 172 (201)
T ss_pred HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------EcCCCHH-----HHHHHHHcCCC
Confidence 4699999752 22 23578899999999999986 4556653 34555679999
Q ss_pred Ee--ehhc
Q 014017 414 II--LTYF 419 (432)
Q Consensus 414 ~I--iTYf 419 (432)
.| .+.+
T Consensus 173 gvav~s~i 180 (201)
T PRK07695 173 GIAVMSGI 180 (201)
T ss_pred EEEEEHHH
Confidence 76 4444
No 213
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=56.21 E-value=1.6e+02 Score=27.48 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCeecCCC---CCCchHHHHHHHHHHCCCccceeecchhhh-ccccchhhhhhhhCCC--------C
Q 014017 247 QLCKQAVSQARAGADVVSPSD---MMDGRVGAIRAALDAEGFQHVSIMSYTAKY-ASSFYGPFREALDSNP--------R 314 (432)
Q Consensus 247 ~Lak~Avs~A~AGADiVAPSD---MMDGrV~aIR~aLD~~Gf~~v~ImSYSaKy-ASsfYGPFRdAa~Sap--------~ 314 (432)
-..++|..++++||+.+...| ...|.+.-+|..-+.. +++|+- |. -..-| -.+.+..+-- .
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v---~iPi~~---~~~i~~~~-~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV---SLPVLR---KDFIIDPY-QIYEARAAGADAVLLIVAA 104 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc---CCCEEE---CCeecCHH-HHHHHHHcCCCEEEEeecc
Confidence 356889999999999997753 2335554433333222 455541 11 00000 0111111100 0
Q ss_pred CCC---------cccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-----chhHHHHHHHhhC--CCCeEEEEe
Q 014017 315 FGD---------KKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-----PYLDVIRLLRDKY--PLPIAAYQV 378 (432)
Q Consensus 315 ~gD---------RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-----~YLDII~~vk~~~--~lPvaaYqV 378 (432)
... -+.+-++++....|..|+.+.. +.|+|++.+=+.- +-+|.++++++.+ ++|+.| .
T Consensus 105 ~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~----~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia--~ 178 (217)
T cd00331 105 LDDEQLKELYELARELGMEVLVEVHDEEELERAL----ALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVS--E 178 (217)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH----HcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEE--E
Confidence 000 0234444333356777743332 3589998665321 2358888988874 577654 1
Q ss_pred chhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 379 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 379 SGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
-|.-. .|-+..++.+|||.++-
T Consensus 179 ------------gGI~s-----~edi~~~~~~Ga~gviv 200 (217)
T cd00331 179 ------------SGIST-----PEDVKRLAEAGADAVLI 200 (217)
T ss_pred ------------cCCCC-----HHHHHHHHHcCCCEEEE
Confidence 23322 24445667779998874
No 214
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.13 E-value=19 Score=33.93 Aligned_cols=89 Identities=19% Similarity=0.264 Sum_probs=55.3
Q ss_pred Ccee--echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 149 GCYR--LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 149 Gv~r--~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
..++ ++.+ .+.+.++.+.+.|+..|.|.. ..|. ..|+. +.+-++.+|+.+|++ ++.-
T Consensus 137 ~~~~~~~~~~-~l~~~~~~~~~~g~~~i~l~D--------t~G~--~~P~~-v~~li~~l~~~~~~~---------~~~~ 195 (265)
T cd03174 137 DAFGCKTDPE-YVLEVAKALEEAGADEISLKD--------TVGL--ATPEE-VAELVKALREALPDV---------PLGL 195 (265)
T ss_pred eecCCCCCHH-HHHHHHHHHHHcCCCEEEech--------hcCC--cCHHH-HHHHHHHHHHhCCCC---------eEEE
Confidence 4555 7764 588888889999988877632 2232 23322 456788999999872 3445
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG 271 (432)
|+|+-. | .=..-++.-.++||++|--|=.-=|
T Consensus 196 H~Hn~~----g---------la~an~laA~~aG~~~id~s~~G~G 227 (265)
T cd03174 196 HTHNTL----G---------LAVANSLAALEAGADRVDGSVNGLG 227 (265)
T ss_pred EeCCCC----C---------hHHHHHHHHHHcCCCEEEecccccc
Confidence 888632 1 1123355667899998855544333
No 215
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=56.01 E-value=32 Score=32.74 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 403 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~Es 403 (432)
+.+.++|++-+. .+.+-. .++|+++++ .++|+.+++.. .||++ +.+.-|--..+..+
T Consensus 7 ~~~~~~a~~i~~-~~~~~v--~~iKvg~~l~~~~g~~~i~~l~~~~-~~i~~--------------DlK~~DIg~tv~~~ 68 (216)
T cd04725 7 PPDEEFALALID-ALGPYV--CAVKVGLELFEAAGPEIVKELRELG-FLVFL--------------DLKLGDIPNTVAAA 68 (216)
T ss_pred CCCHHHHHHHHH-hcCCcc--cEEEECHHHHHhcCHHHHHHHHHCC-CcEEE--------------EeecCchHHHHHHH
Confidence 777777776443 455544 479999876 68899999976 67764 34444555555555
Q ss_pred HHHHHHcCccEee
Q 014017 404 LMCLRRAGADIIL 416 (432)
Q Consensus 404 L~~ikRAGAd~Ii 416 (432)
...+..+|||++.
T Consensus 69 ~~~~~~~gad~~T 81 (216)
T cd04725 69 AEALLGLGADAVT 81 (216)
T ss_pred HHHHHhcCCCEEE
Confidence 5556666777653
No 216
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=55.66 E-value=1.6e+02 Score=29.10 Aligned_cols=71 Identities=20% Similarity=0.319 Sum_probs=51.8
Q ss_pred hhcCCcEEEEcCCCch---------------------------hHHHHHHHhh-CCCCeEEEEec------hhhHHHHHH
Q 014017 343 ESEGADILLVKPGLPY---------------------------LDVIRLLRDK-YPLPIAAYQVS------GEYSMIKAG 388 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y---------------------------LDII~~vk~~-~~lPvaaYqVS------GEYaMikaA 388 (432)
++.|||+|=+ +.|| |++++.+|+. +++|+...-+. |.-..++.+
T Consensus 34 ~~~Gad~iEl--GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~ 111 (256)
T TIGR00262 34 IEAGADALEL--GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKC 111 (256)
T ss_pred HHcCCCEEEE--CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHH
Confidence 4679999866 6666 8889999876 68896655554 667778888
Q ss_pred HHCCCc-----hhh-HHHHHHHHHHHHcCccEe
Q 014017 389 GALKMI-----DEQ-RVMMESLMCLRRAGADII 415 (432)
Q Consensus 389 a~~G~i-----d~~-~~~~EsL~~ikRAGAd~I 415 (432)
+++|.- |+- +-..|.+..++..|.+.|
T Consensus 112 ~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 112 KEVGVDGVLVADLPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred HHcCCCEEEECCCChHHHHHHHHHHHHCCCcEE
Confidence 888862 221 335677888899999976
No 217
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=55.50 E-value=15 Score=35.52 Aligned_cols=51 Identities=24% Similarity=0.345 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCccceeecch
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPS-DMM-----DG--rV~aIR~aLD~~Gf~~v~ImSYS 294 (432)
.|+=--..||+.-|+||||.|||= +.| || .|..|++.++.+|+ ++.||+=|
T Consensus 106 ~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~v~~~~~~~~~~~~-~tkIlaAS 164 (213)
T TIGR00875 106 VTLVFSAAQALLAAKAGATYVSPFVGRLDDIGGDGMKLIEEVKTIFENHAP-DTEVIAAS 164 (213)
T ss_pred EEEecCHHHHHHHHHcCCCEEEeecchHHHcCCCHHHHHHHHHHHHHHcCC-CCEEEEec
Confidence 333344679999999999999992 111 22 35667777777776 56676543
No 218
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.32 E-value=37 Score=34.50 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=57.8
Q ss_pred ccchhhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHh-----hCCCCe
Q 014017 300 SFYGPFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD-----KYPLPI 373 (432)
Q Consensus 300 sfYGPFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~-----~~~lPv 373 (432)
.|||-+.+|+...=+ ++..+.-.+. ..|.+||...+ +.|||+||+=+-.+ +-++++-+ +-++|+
T Consensus 177 ~~~g~i~~av~~~r~~~~~~~~I~VE----v~tleea~eA~----~~GaD~I~LDn~~~--e~l~~av~~~~~~~~~i~l 246 (288)
T PRK07428 177 QAAGGIGEAITRIRQRIPYPLTIEVE----TETLEQVQEAL----EYGADIIMLDNMPV--DLMQQAVQLIRQQNPRVKI 246 (288)
T ss_pred HHhCCHHHHHHHHHHhCCCCCEEEEE----CCCHHHHHHHH----HcCCCEEEECCCCH--HHHHHHHHHHHhcCCCeEE
Confidence 467778888765433 2222334555 77888877654 69999999985433 54444333 224565
Q ss_pred EEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcH
Q 014017 374 AAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 374 aaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
.| .|-|++ |.+..+..+|+|.|-+-..
T Consensus 247 eA---------------sGGIt~-----~ni~~ya~tGvD~Isvgsl 273 (288)
T PRK07428 247 EA---------------SGNITL-----ETIRAVAETGVDYISSSAP 273 (288)
T ss_pred EE---------------ECCCCH-----HHHHHHHHcCCCEEEEchh
Confidence 43 466775 4556778899999987544
No 219
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=55.30 E-value=40 Score=36.74 Aligned_cols=74 Identities=28% Similarity=0.400 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~-raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
=.+.++-+.+.|++-|+| +. -+-|+..| ..|+.||++||++-||+ |
T Consensus 252 dK~rl~ll~~aGvdvviL----DS----------SqGnS~~qiemik~iK~~yP~l~Via-------------------G 298 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVIL----DS----------SQGNSIYQLEMIKYIKETYPDLQIIA-------------------G 298 (503)
T ss_pred hhHHHHHhhhcCCcEEEE----ec----------CCCcchhHHHHHHHHHhhCCCceeec-------------------c
Confidence 367788899999999988 11 12334444 78999999999999983 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV 273 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV 273 (432)
.|- -.+||-.+-.||||.+= -+|--|.|
T Consensus 299 NVV-------T~~qa~nLI~aGaDgLr-VGMGsGSi 326 (503)
T KOG2550|consen 299 NVV-------TKEQAANLIAAGADGLR-VGMGSGSI 326 (503)
T ss_pred cee-------eHHHHHHHHHccCceeE-eccccCce
Confidence 221 24688888999999863 24444443
No 220
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.95 E-value=1.2e+02 Score=29.84 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
+..+.++.+.+.|...|-| |+- |.. + ..|..-.+.-.++.+-++.+|+.. ++-|+.-+. +.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~c-P~~-~-~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~------------ 164 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISC-PNV-K-GGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PN------------ 164 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC-CCC-C-CCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CC------------
Confidence 5788888888999999977 664 432 2 123333344467778889998876 444443321 10
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG 271 (432)
-+ .+.+.|-...++|||.|.-+...-|
T Consensus 165 ----~~----~~~~~a~~~~~~G~d~i~~~nt~~g 191 (296)
T cd04740 165 ----VT----DIVEIARAAEEAGADGLTLINTLKG 191 (296)
T ss_pred ----ch----hHHHHHHHHHHcCCCEEEEECCCcc
Confidence 01 2334444556899998865544333
No 221
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=54.89 E-value=65 Score=32.08 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=51.2
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCc-EEEE---cCC---CchhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHH
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGAD-ILLV---KPG---LPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD-~lMV---KPa---l~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~ 390 (432)
+.|.++ + +|-+.++..-.+.|++ +.+| .|. -.|.++++.+|+.++ +.+.++. .+|...+ +..
T Consensus 32 ~~~~ls----~---eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s-~~e~~~~--~~~ 101 (309)
T TIGR00423 32 DAYVLS----L---EEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFS-PMEVYFL--AKN 101 (309)
T ss_pred CcccCC----H---HHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecC-HHHHHHH--HHH
Confidence 468888 6 4444444444455754 4445 231 126899999999873 6665552 3444333 334
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|+.+ -|.|..+|+||.|.+.
T Consensus 102 ~g~~~-----~e~l~~LkeAGl~~i~ 122 (309)
T TIGR00423 102 EGLSI-----EEVLKRLKKAGLDSMP 122 (309)
T ss_pred cCCCH-----HHHHHHHHHcCCCcCC
Confidence 67765 3678889999999874
No 222
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=54.76 E-value=42 Score=34.06 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=31.7
Q ss_pred hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 358 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+.+|++.+++..++||.+=- ++. ++ -+.|....+.++|||.|+.
T Consensus 151 ~~eiv~~v~~~~~iPv~vKl-~p~------------~~---~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKL-SPF------------FS---ALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHHHhccCCCEEEEc-CCC------------cc---CHHHHHHHHHHcCCCeEEE
Confidence 47999999999999998752 321 12 2456666778889998864
No 223
>PRK01362 putative translaldolase; Provisional
Probab=54.75 E-value=17 Score=35.23 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC-CCC-----C--chHHHHHHHHHHCCCccceeecchh
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPS-DMM-----D--GRVGAIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPS-DMM-----D--GrV~aIR~aLD~~Gf~~v~ImSYSa 295 (432)
.|+=.-..||+.-|+|||+.|||= +.| | ..|..|++.++.+|+ ++-||+=|-
T Consensus 106 ~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~-~tkilaAS~ 165 (214)
T PRK01362 106 VTLIFSANQALLAAKAGATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGF-DTEIIAASV 165 (214)
T ss_pred EeeecCHHHHHHHHhcCCcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC-CcEEEEeec
Confidence 333344679999999999999992 111 1 235677777777775 567775443
No 224
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=54.60 E-value=19 Score=36.05 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=42.0
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
..|+++.+ +++++++++.+.|++.|.|-|-..+ .-+...+...++.||+.+|++.+.
T Consensus 68 ~~~~ls~e-ei~~~~~~~~~~G~~~i~l~gG~~p----------~~~~~~~~~li~~Ik~~~~~i~~~ 124 (340)
T TIGR03699 68 EGYVLSVE-EILQKIEELVAYGGTQILLQGGVNP----------DLGLDYYEDLFRAIKARFPHIHIH 124 (340)
T ss_pred cccCCCHH-HHHHHHHHHHHcCCcEEEEecCCCC----------CCCHHHHHHHHHHHHHHCCCcCCC
Confidence 34678985 6999999999999999988653111 112345668999999999887654
No 225
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=54.45 E-value=41 Score=33.90 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEe-ecCCCCCC-C----cccCcCcCC-CCCHHHHHHHHHHHCCCeEEEeeec
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLF-PKVPDALK-S----PTGDEAYND-NGLVPRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LF-gvi~~~~K-d----~~gs~A~n~-~g~v~raIr~iK~~fPdl~IitDVc 220 (432)
+.-|+++.+ +++++++++.+.|++.++|- |.-|+ .+ + ...+.+++. -..+.+.++.||+... +.+ |
T Consensus 30 ~~~~~l~~e-eI~~~a~~~~~~G~~ei~l~~G~~p~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~-~~~----~ 102 (322)
T TIGR03550 30 LEAALLSPE-EVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEMGYDSTLEYLRELCELALEETG-LLP----H 102 (322)
T ss_pred cccccCCHH-HHHHHHHHHHHCCCCEEEEecCCCcc-ccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcC-Ccc----c
Confidence 345678886 69999999999999998774 54332 21 0 112333432 2345677788886632 211 1
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHH---HHH--------cCCCeecCCCCCCchHHHHHHHHHHCCC
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVS---QAR--------AGADVVSPSDMMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs---~A~--------AGADiVAPSDMMDGrV~aIR~aLD~~Gf 285 (432)
-+- |. .+++.++.|.+..+. ..+ .+.+.++|....+-|+..+|.+- +.|+
T Consensus 103 -------~~~------g~-lt~e~l~~Lk~aG~~~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~-~~Gi 163 (322)
T TIGR03550 103 -------TNP------GV-MSRDELARLKPVNASMGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAG-RLKI 163 (322)
T ss_pred -------cCC------CC-CCHHHHHHHHhhCCCCCcchhhhccccccccccCCCCCCCHHHHHHHHHHHH-HcCC
Confidence 111 21 356667666653210 011 13445666555566777776664 5665
No 226
>PLN02334 ribulose-phosphate 3-epimerase
Probab=54.18 E-value=1.6e+02 Score=27.98 Aligned_cols=140 Identities=26% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCeecCCCCCCc-----------hHHHHHHHHHHCCCc-cceeec----------chhhhccc--
Q 014017 245 VHQLCKQAVSQARAGADVVSPSDMMDG-----------RVGAIRAALDAEGFQ-HVSIMS----------YTAKYASS-- 300 (432)
Q Consensus 245 l~~Lak~Avs~A~AGADiVAPSDMMDG-----------rV~aIR~aLD~~Gf~-~v~ImS----------YSaKyASs-- 300 (432)
...|.++.-...++|+++|== |+||| .+.+||+. .... ++.+|- +.+.-..-
T Consensus 19 ~~~l~~~l~~~~~~g~~~ihl-d~~d~~f~~~~~~g~~~~~~l~~~---~~~~~~vhlmv~~p~d~~~~~~~~gad~v~v 94 (229)
T PLN02334 19 FANLAEEAKRVLDAGADWLHV-DVMDGHFVPNLTIGPPVVKALRKH---TDAPLDCHLMVTNPEDYVPDFAKAGASIFTF 94 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-ecccCCcCCccccCHHHHHHHHhc---CCCcEEEEeccCCHHHHHHHHHHcCCCEEEE
Q ss_pred cch-----hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC--CcEEEEcCCCch----------hHHHH
Q 014017 301 FYG-----PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG--ADILLVKPGLPY----------LDVIR 363 (432)
Q Consensus 301 fYG-----PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG--AD~lMVKPal~Y----------LDII~ 363 (432)
-+| -.-+.+...-..|-+=..-.+ |.+..|.+++.. ++ +|.|++=|-.+= ++-|+
T Consensus 95 H~~q~~~d~~~~~~~~i~~~g~~iGls~~----~~t~~~~~~~~~----~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~ 166 (229)
T PLN02334 95 HIEQASTIHLHRLIQQIKSAGMKAGVVLN----PGTPVEAVEPVV----EKGLVDMVLVMSVEPGFGGQSFIPSMMDKVR 166 (229)
T ss_pred eeccccchhHHHHHHHHHHCCCeEEEEEC----CCCCHHHHHHHH----hccCCCEEEEEEEecCCCccccCHHHHHHHH
Q ss_pred HHHhh-CCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 364 LLRDK-YPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 364 ~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++++. .++|+.+ -|-|+ .|.+..++.+|||.|+
T Consensus 167 ~~~~~~~~~~I~a---------------~GGI~-----~e~i~~l~~aGad~vv 200 (229)
T PLN02334 167 ALRKKYPELDIEV---------------DGGVG-----PSTIDKAAEAGANVIV 200 (229)
T ss_pred HHHHhCCCCcEEE---------------eCCCC-----HHHHHHHHHcCCCEEE
No 227
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=53.95 E-value=30 Score=34.76 Aligned_cols=107 Identities=14% Similarity=0.179 Sum_probs=70.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhhhh
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
+|.||- +.++.|++ .+.++|+|-|.+.+-. +=|...++.+.+..+ .+++||.-..
T Consensus 23 ~g~iD~-~~l~~lv~---~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~------------ 85 (309)
T cd00952 23 TDTVDL-DETARLVE---RLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA-GRVPVFVGAT------------ 85 (309)
T ss_pred CCCcCH-HHHHHHHH---HHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC-CCCCEEEEec------------
Confidence 477763 34444443 4456899988876542 345666666666665 4566664321
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhC-CCCeEEEEec
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAYQVS 379 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~-~lPvaaYqVS 379 (432)
-.|.+|+++.++.=.+-|||.+||=|=..| .|-.+.+.+.+ ++||..||.-
T Consensus 86 ---------------------~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 86 ---------------------TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred ---------------------cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 235678887777667779999999875322 45556777888 6999999884
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
+
T Consensus 145 ~ 145 (309)
T cd00952 145 E 145 (309)
T ss_pred h
Confidence 3
No 228
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=53.65 E-value=92 Score=31.78 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=94.7
Q ss_pred CChhhHhhhccCCCCCC---------------CceeeEEEeeCCCC----cccCCCCCceeechhhhHHHHHHHHHHcCC
Q 014017 111 KSPAMRASFQETNLSPA---------------NFVYPLFIHEGEED----TPIGAMPGCYRLGWRHGLVQEVAKARDVGV 171 (432)
Q Consensus 111 ~~~~~R~l~~Et~Ls~~---------------~LI~PlFV~eg~~~----~~I~sMPGv~r~si~~~l~~~v~~~~~~GI 171 (432)
....+|+++++..|+.- .-..=+-+.++=+. =.|+..-|-.+...+ ++.++++.+.+.|+
T Consensus 30 ~~~~~~~~~~~~~l~tvc~~a~cpn~~ec~~~~tatfm~i~~gC~~~C~FC~v~~~rg~~~~~~e-ei~~~a~~~~~~Gl 108 (302)
T TIGR00510 30 VIAQIKNTMKNKGLHTVCEEASCPNLTECWNHGTATFMILGDICTRRCPFCDVAHGRNPLPPDPE-EPAKLAETIKDMGL 108 (302)
T ss_pred hHHHHHHHHHHCCCceeecCCCCCCcccccCCCEEEEEecCcCcCCCCCcCCccCCCCCCCCCHH-HHHHHHHHHHHCCC
Confidence 34567888888777642 11222223333111 123333233333454 69999999999999
Q ss_pred CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee---cCCC---ccccHHHH
Q 014017 172 NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV---REDG---VIMNDETV 245 (432)
Q Consensus 172 ~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl---~~~g---~IdND~Tl 245 (432)
+.|+|-++--++..| .| ..-+.+.|+.||+..|++.|-. |.+- -.|-+..+ .+.| .--|-+|+
T Consensus 109 kevvLTsv~~ddl~d-~g------~~~l~~li~~I~~~~p~i~Iev---l~~d-~~g~~e~l~~l~~aG~dv~~hnlEt~ 177 (302)
T TIGR00510 109 KYVVITSVDRDDLED-GG------ASHLAECIEAIREKLPNIKIET---LVPD-FRGNIAALDILLDAPPDVYNHNLETV 177 (302)
T ss_pred CEEEEEeecCCCccc-cc------HHHHHHHHHHHHhcCCCCEEEE---eCCc-ccCCHHHHHHHHHcCchhhcccccch
Confidence 999998862122222 11 1247889999999999865432 1110 11212221 1111 11233444
Q ss_pred HHHHH------------HHHHHH-HcCCCeecCCCCCCch------HHHHHHHHHHCCCccceeecch
Q 014017 246 HQLCK------------QAVSQA-RAGADVVSPSDMMDGR------VGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 246 ~~Lak------------~Avs~A-~AGADiVAPSDMMDGr------V~aIR~aLD~~Gf~~v~ImSYS 294 (432)
+.|.+ ..+..| +++-++..-||+|=|- +...=+.|.+.|+..+.|--|-
T Consensus 178 ~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl 245 (302)
T TIGR00510 178 ERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYL 245 (302)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeeccc
Confidence 44332 233333 3445788889998874 3444456778899888888884
No 229
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.43 E-value=3.2e+02 Score=29.49 Aligned_cols=224 Identities=16% Similarity=0.180 Sum_probs=119.4
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014017 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (432)
Q Consensus 133 lFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd 212 (432)
+.|+|-. -+.=.+-++..|++.+ +.++.++.+.+.|+.++=+.|- ..-|. +..|-... --..++.|++..|+
T Consensus 4 V~I~DtT-lRDG~Qs~~~~~~~t~-dkl~ia~~Ld~~Gv~~IE~~gg---atf~~--~~~f~~e~-p~e~l~~l~~~~~~ 75 (448)
T PRK12331 4 IKITETV-LRDGQQSLIATRMTTE-EMLPILEKLDNAGYHSLEMWGG---ATFDA--CLRFLNED-PWERLRKIRKAVKK 75 (448)
T ss_pred cEEEECC-CCccccCcCCcccCHH-HHHHHHHHHHHcCCCEEEecCC---ccchh--hhccCCCC-HHHHHHHHHHhCCC
Confidence 5566532 1222345656688885 6899999999999999998542 11110 00121112 24688999998898
Q ss_pred eEEE--eee-cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCc
Q 014017 213 LVIY--TDV-ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQ 286 (432)
Q Consensus 213 l~Ii--tDV-cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~ 286 (432)
..+. +-. .+..|+.. -|..++.-.+.|+ ++|.|+|--.|-+ +....+|+.+ .++|+.
T Consensus 76 ~~l~~l~r~~N~~G~~~~-------------pddvv~~~v~~A~---~~Gvd~irif~~lnd~~n~~~~v~~a-k~~G~~ 138 (448)
T PRK12331 76 TKLQMLLRGQNLLGYRNY-------------ADDVVESFVQKSV---ENGIDIIRIFDALNDVRNLETAVKAT-KKAGGH 138 (448)
T ss_pred CEEEEEeccccccccccC-------------chhhHHHHHHHHH---HCCCCEEEEEEecCcHHHHHHHHHHH-HHcCCe
Confidence 5543 211 12222111 1333444445443 6799987655433 3333344433 456763
Q ss_pred cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hH
Q 014017 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LD 360 (432)
Q Consensus 287 ~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LD 360 (432)
-..-++|+- +| + .+ +.-..+-.+++ ++-|||.|-+|=-.=+ -+
T Consensus 139 v~~~i~~t~-------~p-------------~----~~----~~~~~~~a~~l---~~~Gad~I~i~Dt~G~l~P~~v~~ 187 (448)
T PRK12331 139 AQVAISYTT-------SP-------------V----HT----IDYFVKLAKEM---QEMGADSICIKDMAGILTPYVAYE 187 (448)
T ss_pred EEEEEEeec-------CC-------------C----CC----HHHHHHHHHHH---HHcCCCEEEEcCCCCCCCHHHHHH
Confidence 333356653 12 1 22 21222222232 3469999988843332 57
Q ss_pred HHHHHHhhCCCCeEEEEechhh----HHHHHHHHCC--Cchh---------hHHHHHHHH-HHHHcCcc
Q 014017 361 VIRLLRDKYPLPIAAYQVSGEY----SMIKAGGALK--MIDE---------QRVMMESLM-CLRRAGAD 413 (432)
Q Consensus 361 II~~vk~~~~lPvaaYqVSGEY----aMikaAa~~G--~id~---------~~~~~EsL~-~ikRAGAd 413 (432)
+|+.+|+.+++|| .+|--=.+ +-.-+|.++| ++|- -+.-+|++. .+++.|-+
T Consensus 188 lv~alk~~~~~pi-~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 188 LVKRIKEAVTVPL-EVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred HHHHHHHhcCCeE-EEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 9999999999997 45653222 2233456666 3332 134455554 35555655
No 230
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=53.21 E-value=71 Score=32.58 Aligned_cols=45 Identities=22% Similarity=0.498 Sum_probs=32.6
Q ss_pred HHHHHHHhchhcCCcEEEEcCC----CchhHHHHHHHhhCC-CCeEEEEe
Q 014017 334 EALVEAQADESEGADILLVKPG----LPYLDVIRLLRDKYP-LPIAAYQV 378 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVKPa----l~YLDII~~vk~~~~-lPvaaYqV 378 (432)
+....+..-+++|+|+|.|=-+ ...+|+|+.+|+.++ +||.+=+|
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v 143 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV 143 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC
Confidence 4455566667899999987432 235899999999885 99987333
No 231
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=52.85 E-value=33 Score=36.03 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=42.3
Q ss_pred HhchhcCCcEEEEcCCCch----hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 340 QADESEGADILLVKPGLPY----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 340 ~~Di~EGAD~lMVKPal~Y----LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
+.+...|+|+|.+=-+.-| +|.|+.+|+.| +++|.|=+| .. -|....+..||||.
T Consensus 116 L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV---------------~T-----~e~a~~Li~aGAD~ 175 (346)
T PRK05096 116 ILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNV---------------VT-----GEMVEELILSGADI 175 (346)
T ss_pred HHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecc---------------cC-----HHHHHHHHHcCCCE
Confidence 3333469999999999876 88999999999 599998777 12 12233456689998
Q ss_pred ee
Q 014017 415 IL 416 (432)
Q Consensus 415 Ii 416 (432)
|.
T Consensus 176 vK 177 (346)
T PRK05096 176 VK 177 (346)
T ss_pred EE
Confidence 73
No 232
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=52.60 E-value=91 Score=31.81 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFg----------v-i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
...+-++.+.+.|...|-|.+ . ..+.-.|+.|-.-.|.--++...++.||++++ ++.|..=+....|
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~- 216 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL- 216 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc-
Confidence 355556677889999999977 1 12456788887766777788899999999995 6666533332222
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCccceeecchhh-hccccch
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAK-YASSFYG 303 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM-DGrV~aIR~aLD~~Gf~~v~ImSYSaK-yASsfYG 303 (432)
| + |-.+.++++ +.+-.+.++|+|.|.-|-.+ .+++..+ -.|.-+ +.-.++.
T Consensus 217 ---~-----~-~g~~~~e~~----~i~~~Le~~G~d~i~vs~g~~e~~~~~~--------------~~~~~~~~~~~~~~ 269 (353)
T cd02930 217 ---V-----E-GGSTWEEVV----ALAKALEAAGADILNTGIGWHEARVPTI--------------ATSVPRGAFAWATA 269 (353)
T ss_pred ---C-----C-CCCCHHHHH----HHHHHHHHcCCCEEEeCCCcCCCCCccc--------------cccCCchhhHHHHH
Confidence 1 1 113344444 44445578999999876543 1221100 001111 1112344
Q ss_pred hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhh
Q 014017 304 PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDK 368 (432)
Q Consensus 304 PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~ 368 (432)
.+|+++ +.|-.+.- .+ .+..+ +.++ +++| +|+||+ .|.+.-=|+++++++-
T Consensus 270 ~ik~~v-~iPVi~~G---~i------~~~~~-a~~~---i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 270 KLKRAV-DIPVIASN---RI------NTPEV-AERL---LADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred HHHHhC-CCCEEEcC---CC------CCHHH-HHHH---HHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 555555 33433210 01 11122 2222 4555 999876 6777777889988864
No 233
>PRK08444 hypothetical protein; Provisional
Probab=52.58 E-value=33 Score=35.55 Aligned_cols=107 Identities=17% Similarity=0.270 Sum_probs=69.0
Q ss_pred eeecchhhhcc--ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEE-E---cCCC---chh
Q 014017 289 SIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILL-V---KPGL---PYL 359 (432)
Q Consensus 289 ~ImSYSaKyAS--sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lM-V---KPal---~YL 359 (432)
.++.| +.+++ +-|--|+.-- ++...|-|+ + +|.+.++..-.+.|+.-+. | .|.. .|+
T Consensus 51 ~~In~-TN~C~~~C~FCaf~~~~------~~~~~y~ls----~---eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~ 116 (353)
T PRK08444 51 RHINP-TNICADVCKFCAFSAHR------KNPNPYTMS----H---EEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYL 116 (353)
T ss_pred CCccc-ccccccCCccCCCccCC------CCCccccCC----H---HHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHH
Confidence 56666 55665 5555554211 233458887 5 6766667666778887554 3 3443 579
Q ss_pred HHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 360 DVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 360 DII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|+|+.+|+.++ +-+.|+.. +|..-+ |-..|+.. -|.|..+|.||.|-+--
T Consensus 117 e~ir~Ik~~~p~i~i~a~s~-~Ei~~~--a~~~g~~~-----~e~l~~LkeAGl~~~~g 167 (353)
T PRK08444 117 EIFKKIKEAYPNLHVKAMTA-AEVDFL--SRKFGKSY-----EEVLEDMLEYGVDSMPG 167 (353)
T ss_pred HHHHHHHHHCCCceEeeCCH-HHHHHH--HHHcCCCH-----HHHHHHHHHhCcccCCC
Confidence 99999999884 88888765 332222 23466654 47788999999997643
No 234
>PRK07094 biotin synthase; Provisional
Probab=52.45 E-value=63 Score=32.03 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=36.7
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 014017 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (432)
Q Consensus 150 v~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~ 214 (432)
-|+++.+ +++++++.+.+.|++.|.|-|--++. ++ ..-+.+.++.||+. +++.
T Consensus 67 r~~ls~e-ei~~~~~~~~~~g~~~i~l~gG~~~~---------~~-~~~l~~l~~~i~~~-~~l~ 119 (323)
T PRK07094 67 RYRLSPE-EILECAKKAYELGYRTIVLQSGEDPY---------YT-DEKIADIIKEIKKE-LDVA 119 (323)
T ss_pred CcCCCHH-HHHHHHHHHHHCCCCEEEEecCCCCC---------CC-HHHHHHHHHHHHcc-CCce
Confidence 4566875 69999999999999999885421110 11 12466788999887 6654
No 235
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.38 E-value=58 Score=33.30 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=64.4
Q ss_pred HHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-----CeEEEeeeccc
Q 014017 159 LVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-----DLVIYTDVALD 222 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFg----------v-i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-----dl~IitDVcLc 222 (432)
..+-++.+.+.|...|-|.+ . ..+.-.|+.|-.-.|---++.+.|+.||++++ ++.|..-+..+
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 44455677889999999853 1 12344788776655666677889999999985 77787777655
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM 268 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM 268 (432)
+|.. |-++-+++ .+.+-.+.++|+|.|.-|..
T Consensus 226 ~~~~----------~g~~~ee~----~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 226 EPEE----------PGIRMEDT----LALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccC----------CCCCHHHH----HHHHHHHHHcCCCEEEeccC
Confidence 5421 22333444 34444557899999998864
No 236
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=52.37 E-value=51 Score=35.32 Aligned_cols=91 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHhchhcCCcEEEEcCCCc----hhHHHHHHHhhCCCCeEEEEech-----hh-HHHHHHHHCC--Cc
Q 014017 327 ELYANYREALVEAQADESEGADILLVKPGLP----YLDVIRLLRDKYPLPIAAYQVSG-----EY-SMIKAGGALK--MI 394 (432)
Q Consensus 327 ~~p~N~~EAlre~~~Di~EGAD~lMVKPal~----YLDII~~vk~~~~lPvaaYqVSG-----EY-aMikaAa~~G--~i 394 (432)
....|.+|++.++.... ++||+|=.-=... =-+ +..+++..+.|+..|--+. || .+++.+++.| ++
T Consensus 6 i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~~-~~~l~~~~~~pilT~R~~~~~~~~~~~~~l~~~~~~~~d~v 83 (477)
T PRK09310 6 ISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDLE-LKKLIELAPIPILTWKKHESCSQAAWIDKMQSLAKLNPNYL 83 (477)
T ss_pred ecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHHH-HHHHHhcCCCceEEeccCccCCHHHHHHHHHHHHHhCCCEE
Confidence 45678889998888888 8899974332211 013 4566665578999888655 33 6777777766 34
Q ss_pred hhh----HHHHHHHHHHHHcCccEeehhcH
Q 014017 395 DEQ----RVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 395 d~~----~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
|-+ +-.++.+... +.|..+|+||+-
T Consensus 84 DiEl~~~~~~~~~l~~~-~~~~kvI~S~Hd 112 (477)
T PRK09310 84 DIDKDFPKEALIRIRKL-HPKIKIILSYHT 112 (477)
T ss_pred EEEecCCHHHHHHHHHh-CCCCEEEEEcCC
Confidence 443 2233333332 238889999974
No 237
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.86 E-value=50 Score=34.41 Aligned_cols=53 Identities=32% Similarity=0.480 Sum_probs=39.6
Q ss_pred hcCCcEEEE--------cCCCch--hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc
Q 014017 344 SEGADILLV--------KPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 344 ~EGAD~lMV--------KPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd 413 (432)
++|||.|.+ ||+.+. ++.++.+++.+++|++| -|-|+.+ .+..++.+||+
T Consensus 258 ~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~A---------------iGGI~~~-----ni~~l~~~Ga~ 317 (347)
T PRK02615 258 AEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFA---------------IGGIDKS-----NIPEVLQAGAK 317 (347)
T ss_pred HcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHH-----HHHHHHHcCCc
Confidence 589999987 655333 78999999999999987 4557754 34456788998
Q ss_pred Eee
Q 014017 414 IIL 416 (432)
Q Consensus 414 ~Ii 416 (432)
.|-
T Consensus 318 gVA 320 (347)
T PRK02615 318 RVA 320 (347)
T ss_pred EEE
Confidence 763
No 238
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=51.73 E-value=53 Score=32.77 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ 406 (432)
..|.+|+.... +.|||+||+=|- ++|-++++.+.. ++|+.| -|-|+.+ .+..
T Consensus 189 v~s~eea~~A~----~~gaDyI~ld~~--~~e~l~~~~~~~~~~ipi~A---------------iGGI~~~-----ni~~ 242 (268)
T cd01572 189 VETLEQLKEAL----EAGADIIMLDNM--SPEELREAVALLKGRVLLEA---------------SGGITLE-----NIRA 242 (268)
T ss_pred ECCHHHHHHHH----HcCCCEEEECCc--CHHHHHHHHHHcCCCCcEEE---------------ECCCCHH-----HHHH
Confidence 55777755543 689999999774 789999988765 488775 5667754 4556
Q ss_pred HHHcCccEeeh
Q 014017 407 LRRAGADIILT 417 (432)
Q Consensus 407 ikRAGAd~IiT 417 (432)
+..+|+|.|-+
T Consensus 243 ~a~~Gvd~Iav 253 (268)
T cd01572 243 YAETGVDYISV 253 (268)
T ss_pred HHHcCCCEEEE
Confidence 78899999865
No 239
>PLN02540 methylenetetrahydrofolate reductase
Probab=51.66 E-value=2.7e+02 Score=31.23 Aligned_cols=182 Identities=13% Similarity=0.223 Sum_probs=98.8
Q ss_pred CCCCceeechh----hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc--cCcCcCCCCCHHHHHHHHHHHCCCeEEEeee
Q 014017 146 AMPGCYRLGWR----HGLVQEVAKARDVGVNSVVLFPKVPDALKSPT--GDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 146 sMPGv~r~si~----~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~--gs~A~n~~g~v~raIr~iK~~fPdl~IitDV 219 (432)
.++=+.+++.. ..+.+.++.+.++||+.|+...=-|+...|.. ....|+ -...-|+.||+.+.|- -++
T Consensus 58 Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~---~A~dLV~~Ir~~~gd~---f~I 131 (565)
T PLN02540 58 CVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFA---CALDLVKHIRSKYGDY---FGI 131 (565)
T ss_pred CCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcc---cHHHHHHHHHHhCCCC---ceE
Confidence 34555565542 24777788889999999977543232211110 011121 2456678888887751 122
Q ss_pred cccCCCCCCcceeecCCCcc---ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHHHHHHHCCCccceee----
Q 014017 220 ALDPYSSDGHDGIVREDGVI---MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIRAALDAEGFQHVSIM---- 291 (432)
Q Consensus 220 cLc~YTshGHcGIl~~~g~I---dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV-~aIR~aLD~~Gf~~v~Im---- 291 (432)
++--|- .||.-....++.+ +-+.-++.|. .-.+||||.+-.-=--|-.. ....+.+.+.|. +++|+
T Consensus 132 gVAGYP-EgHpe~~~~~~~~~~~~~~~dl~~Lk----~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~Gi-~vPIipGIm 205 (565)
T PLN02540 132 TVAGYP-EAHPDVIGGDGLATPEAYQKDLAYLK----EKVDAGADLIITQLFYDTDIFLKFVNDCRQIGI-TCPIVPGIM 205 (565)
T ss_pred EEeCCC-CCCCcccccccccCCCChHHHHHHHH----HHHHcCCCEEeeccccCHHHHHHHHHHHHhcCC-CCCEEeeec
Confidence 344663 5887543221111 1123344443 44578999998888888665 566666777785 45443
Q ss_pred ---cchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhch----hcCCcEEEEcCCCchhHHHHH
Q 014017 292 ---SYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADE----SEGADILLVKPGLPYLDVIRL 364 (432)
Q Consensus 292 ---SYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di----~EGAD~lMVKPal~YLDII~~ 364 (432)
||.. |+-.+ ++.-|.+|....+.|.++.-|- ++|.++ -.+++++
T Consensus 206 PI~S~k~---------l~r~~------------~l~Gi~IP~~i~~rLe~~kddde~v~~~Giei--------a~e~~~~ 256 (565)
T PLN02540 206 PINNYKG---------FLRMT------------GFCKTKIPAEITAALEPIKDNDEAVKAYGIHL--------GTEMCKK 256 (565)
T ss_pred ccCCHHH---------HHHHH------------hccCCcCCHHHHHHHHhcCCCHHHHHHHHHHH--------HHHHHHH
Confidence 3321 11111 1222445767777776655442 246554 3678888
Q ss_pred HHhh
Q 014017 365 LRDK 368 (432)
Q Consensus 365 vk~~ 368 (432)
+++.
T Consensus 257 L~~~ 260 (565)
T PLN02540 257 ILAH 260 (565)
T ss_pred HHHc
Confidence 8775
No 240
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=51.62 E-value=61 Score=30.09 Aligned_cols=106 Identities=13% Similarity=0.199 Sum_probs=66.8
Q ss_pred CChhhHhhhccCCCCCCCceeeEEEeeCC-C-Ccc--------cCCCCCceeech--hhhHHHHHHHHHHcCCCeEEE-e
Q 014017 111 KSPAMRASFQETNLSPANFVYPLFIHEGE-E-DTP--------IGAMPGCYRLGW--RHGLVQEVAKARDVGVNSVVL-F 177 (432)
Q Consensus 111 ~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~-~-~~~--------I~sMPGv~r~si--~~~l~~~v~~~~~~GI~sv~L-F 177 (432)
.+..+|.|++... ++-+.-|.++.+.. . +.. =...|=+.+++- .+++.+.++.+.+.|...|-| +
T Consensus 11 ~~~~fR~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~ 88 (231)
T cd02801 11 TDLPFRLLCRRYG--ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNM 88 (231)
T ss_pred cCHHHHHHHHHHC--CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4567788877755 44344455554432 1 110 012222333321 135777788888889999988 4
Q ss_pred ecCCC--CCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec
Q 014017 178 PKVPD--ALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 178 gvi~~--~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVc 220 (432)
|- |. ..+|+.|+...+.-.++...++.+++..+ +-|..++.
T Consensus 89 g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r 131 (231)
T cd02801 89 GC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIR 131 (231)
T ss_pred CC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEe
Confidence 53 32 35788999888888889999999999887 55555654
No 241
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.44 E-value=27 Score=33.72 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=41.8
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 141 ~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
...|..+||++ -..|+..++++|.+.|.|||- +. .|. ..-|+.||.-||++-+|
T Consensus 95 ~~~i~~iPG~~-------TptEi~~A~~~Ga~~vK~FPa--~~----~GG---------~~yikal~~plp~~~l~ 148 (201)
T PRK06015 95 DSDVPLLPGAA-------TPSEVMALREEGYTVLKFFPA--EQ----AGG---------AAFLKALSSPLAGTFFC 148 (201)
T ss_pred HcCCCEeCCCC-------CHHHHHHHHHCCCCEEEECCc--hh----hCC---------HHHHHHHHhhCCCCcEE
Confidence 46899999992 367899999999999999994 11 010 35688999999987766
No 242
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=51.28 E-value=1.6e+02 Score=26.67 Aligned_cols=78 Identities=14% Similarity=0.280 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCC---chhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh-----
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGL---PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE----- 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal---~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~----- 396 (432)
..|..+++.... +...|++++- |+. .=+|+++.+++.+ ..|+..+.-..+...+..|.+.|..+.
T Consensus 35 ~~~~~~~~~~~~---~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~ 111 (216)
T PRK10840 35 FEDSTALINNLP---KLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQG 111 (216)
T ss_pred ECCHHHHHHHHH---hCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCC
Confidence 467788876543 2458999885 442 4578999998765 589999998889999999888886432
Q ss_pred -hHHHHHHHHHHHH
Q 014017 397 -QRVMMESLMCLRR 409 (432)
Q Consensus 397 -~~~~~EsL~~ikR 409 (432)
...+.+++..+..
T Consensus 112 ~~~~l~~ai~~v~~ 125 (216)
T PRK10840 112 APTDLPKALAALQK 125 (216)
T ss_pred CHHHHHHHHHHHHC
Confidence 2445555555543
No 243
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=51.16 E-value=74 Score=32.28 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHhc-hhcCCcEEE----------EcCCC---------chhHHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 329 YANYREALVEAQAD-ESEGADILL----------VKPGL---------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 329 p~N~~EAlre~~~D-i~EGAD~lM----------VKPal---------~YLDII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
.+|.-|.+.++... .+.|+|+|= +|.+. .=.+|++.+++..++||.+.--
T Consensus 72 ~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR---------- 141 (321)
T PRK10415 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR---------- 141 (321)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE----------
Confidence 56555556665555 457899874 33221 1257888888888999887655
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.||-+...-..|....+..+|+|.|.
T Consensus 142 --~G~~~~~~~~~~~a~~le~~G~d~i~ 167 (321)
T PRK10415 142 --TGWAPEHRNCVEIAQLAEDCGIQALT 167 (321)
T ss_pred --ccccCCcchHHHHHHHHHHhCCCEEE
Confidence 57765544567777788999999874
No 244
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=51.03 E-value=69 Score=29.16 Aligned_cols=64 Identities=30% Similarity=0.316 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHhchhcCCcEEEE--------cCCCc---hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhh
Q 014017 330 ANYREALVEAQADESEGADILLV--------KPGLP---YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQ 397 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMV--------KPal~---YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~ 397 (432)
.|.+|+.+ + .+.|+|++++ ||+.. =++.++.+++.+ ++||.| .|-+++
T Consensus 104 h~~~e~~~-a---~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a---------------~GGI~~- 163 (196)
T TIGR00693 104 HNLEELAE-A---EAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVA---------------IGGITL- 163 (196)
T ss_pred CCHHHHHH-H---hHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEE---------------ECCcCH-
Confidence 34455432 2 3579999985 33421 378888888776 489876 355664
Q ss_pred HHHHHHHHHHHHcCccEeeh
Q 014017 398 RVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 398 ~~~~EsL~~ikRAGAd~IiT 417 (432)
|.+..++.+|||.|..
T Consensus 164 ----~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 164 ----ENAAEVLAAGADGVAV 179 (196)
T ss_pred ----HHHHHHHHcCCCEEEE
Confidence 4566677889998763
No 245
>CHL00148 orf27 Ycf27; Reviewed
Probab=51.02 E-value=1.7e+02 Score=26.03 Aligned_cols=64 Identities=25% Similarity=0.271 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..+..+++.... .+..|++++- |...-+++++.+++...+|+....-.+++.....+.+.|..|
T Consensus 36 ~~~~~~~l~~~~---~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~ 102 (240)
T CHL00148 36 ASDGEEALKLFR---KEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLTALGDVSDRITGLELGADD 102 (240)
T ss_pred eCCHHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEECCCCHHhHHHHHHCCCCE
Confidence 346677766543 3457999985 566678999999987789999988888888888888888764
No 246
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=50.47 E-value=2.3e+02 Score=26.94 Aligned_cols=160 Identities=20% Similarity=0.146 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+.+.|+..+.++.. .. +.. ..++-...++.|++... +-|+ -+|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~-~~---~~~------~~~~~~~~i~~i~~~~~-~pv~------------------~~G 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDI-TA---SSE------GRETMLDVVERVAEEVF-IPLT------------------VGG 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcC-Cc---ccc------cCcccHHHHHHHHHhCC-CCEE------------------EeC
Confidence 4788899999999999999885 31 211 12455678888888752 2222 136
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhh---hhhhhCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF---REALDSNPR 314 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF---RdAa~Sap~ 314 (432)
-|.+-+.++.+.+ .|||.|.=.-..-..-..+++.+++-| ++-.+.|-.+|- ++. +-+.
T Consensus 79 GI~s~~d~~~~l~-------~G~~~v~ig~~~~~~p~~~~~i~~~~~-~~~i~~~ld~k~-----~~~~~~~v~~----- 140 (243)
T cd04731 79 GIRSLEDARRLLR-------AGADKVSINSAAVENPELIREIAKRFG-SQCVVVSIDAKR-----RGDGGYEVYT----- 140 (243)
T ss_pred CCCCHHHHHHHHH-------cCCceEEECchhhhChHHHHHHHHHcC-CCCEEEEEEeee-----cCCCceEEEE-----
Confidence 6666666665544 588866544333333455566555432 222334433330 000 0000
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE--------cCCCchhHHHHHHHhhCCCCeEE
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLV--------KPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV--------KPal~YLDII~~vk~~~~lPvaa 375 (432)
|-.+... .-+..+-.++. .+.|+|.|.| ++ .+.++.++++++..++||.+
T Consensus 141 ---~~~~~~~----~~~~~~~~~~l---~~~G~d~i~v~~i~~~g~~~-g~~~~~i~~i~~~~~~pvia 198 (243)
T cd04731 141 ---HGGRKPT----GLDAVEWAKEV---EELGAGEILLTSMDRDGTKK-GYDLELIRAVSSAVNIPVIA 198 (243)
T ss_pred ---cCCceec----CCCHHHHHHHH---HHCCCCEEEEeccCCCCCCC-CCCHHHHHHHHhhCCCCEEE
Confidence 1111111 21222323333 4679998888 33 35799999999999999876
No 247
>PRK05926 hypothetical protein; Provisional
Probab=50.25 E-value=64 Score=33.65 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=55.3
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCc-EEEE---cCC---CchhHHHHHHHhhCC-CCeEEEEech-hhHHHH
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGAD-ILLV---KPG---LPYLDVIRLLRDKYP-LPIAAYQVSG-EYSMIK 386 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD-~lMV---KPa---l~YLDII~~vk~~~~-lPvaaYqVSG-EYaMik 386 (432)
++.+.|-|+ + +|.+.++..- +.|+. +.|| .|. -.|+|+++.+|+.++ +-+.+ .|| ||..++
T Consensus 92 ~~~~~~~ls----~---eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a--~s~~Ei~~~~ 161 (370)
T PRK05926 92 GDPKGWFYT----P---DQLVQSIKEN-PSPITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLHIKA--LTAIEYAYLS 161 (370)
T ss_pred CCcccccCC----H---HHHHHHHHHH-hcCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCeeEEE--CCHHHHHHHH
Confidence 456678887 4 5555544443 56765 5566 232 236899999999874 55444 555 787775
Q ss_pred HHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 387 AGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 387 aAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
. ..|+. .-|.|..+|.||.|.+-..
T Consensus 162 ~--~~~~~-----~~e~l~~LkeAGl~~~~g~ 186 (370)
T PRK05926 162 K--LDNLP-----VKEVLQTLKIAGLDSIPGG 186 (370)
T ss_pred h--hcCCC-----HHHHHHHHHHcCcCccCCC
Confidence 3 33443 3567889999999986643
No 248
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.17 E-value=85 Score=31.23 Aligned_cols=109 Identities=19% Similarity=0.320 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHH------------------HHHHHHHCCCeEEEeee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT------------------IWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~ra------------------Ir~iK~~fPdl~IitDV 219 (432)
...+.++.+.+.|+.-+-| |+ | .-|+.+ ||++.|. ++.+|++.+++-++
T Consensus 27 ~~~~~~~~l~~~Gad~iEl-Gi-P--fSDP~a------DGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v--- 93 (258)
T PRK13111 27 TSLEIIKALVEAGADIIEL-GI-P--FSDPVA------DGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV--- 93 (258)
T ss_pred HHHHHHHHHHHCCCCEEEE-CC-C--CCCCcc------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---
Confidence 5788899999999998887 63 4 234432 4666432 34444455663333
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchh
Q 014017 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 220 cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa 295 (432)
|-.|.. .+.. --++...+ ..+++|+|-+---|+-=......+++++++|+.-|.++|.++
T Consensus 94 -lm~Y~N-----~i~~-------~G~e~f~~---~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t 153 (258)
T PRK13111 94 -LMTYYN-----PIFQ-------YGVERFAA---DAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTT 153 (258)
T ss_pred -EEeccc-----HHhh-------cCHHHHHH---HHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 223311 0100 01222332 346789988777788778999999999999998888888776
No 249
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=49.93 E-value=27 Score=33.57 Aligned_cols=39 Identities=44% Similarity=0.634 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCccceee
Q 014017 249 CKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIM 291 (432)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGr-----------V~aIR~aLD~~Gf~~v~Im 291 (432)
..||..-++|||++|+|- =|| |..+++.++..|+ ++-||
T Consensus 112 ~~Qa~~Aa~AGA~yvsP~---vgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkil 161 (211)
T cd00956 112 AAQALLAAKAGATYVSPF---VGRIDDLGGDGMELIREIRTIFDNYGF-DTKIL 161 (211)
T ss_pred HHHHHHHHHcCCCEEEEe---cChHhhcCCCHHHHHHHHHHHHHHcCC-CceEE
Confidence 578999999999999993 355 4455555555554 34444
No 250
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=49.69 E-value=1.3e+02 Score=30.69 Aligned_cols=96 Identities=23% Similarity=0.246 Sum_probs=56.1
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc---------CCC--c---hhHHH
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK---------PGL--P---YLDVI 362 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK---------Pal--~---YLDII 362 (432)
+.++| --.|+..-+.|-+.+--..|.. .+..+-++++...+ +||.+-+- |.. . ++|+|
T Consensus 100 ~~~~~-~~vr~~~~~~p~i~nl~~~~~~-----~~~~~~~~~~i~~i--~adal~i~ln~~q~~~~p~g~~~f~~~le~i 171 (333)
T TIGR02151 100 TADTF-EVVREEAPNGPLIANIGAPQLV-----EGGPEEAQEAIDMI--EADALAIHLNVLQELVQPEGDRNFKGWLEKI 171 (333)
T ss_pred hHhHH-HHHHHhCCCCcEEeecCchhhc-----cccHHHHHHHHHHh--cCCCEEEcCcccccccCCCCCcCHHHHHHHH
Confidence 44455 4456655555655544444553 22234455555555 35554332 221 1 46999
Q ss_pred HHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 363 RLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 363 ~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+.+++..++||.+=.| | .|. ..|....+..+|+|+|.-
T Consensus 172 ~~i~~~~~vPVivK~~-g----------~g~------~~~~a~~L~~aGvd~I~V 209 (333)
T TIGR02151 172 AEICSQLSVPVIVKEV-G----------FGI------SKEVAKLLADAGVSAIDV 209 (333)
T ss_pred HHHHHhcCCCEEEEec-C----------CCC------CHHHHHHHHHcCCCEEEE
Confidence 9999999999996544 3 121 246667788889998864
No 251
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=49.65 E-value=23 Score=34.55 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCccceeec
Q 014017 244 TVHQLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPS-DMM-----DG--rV~aIR~aLD~~Gf~~v~ImS 292 (432)
|+=--..||+.-|+|||+.|||= +.| || .|..|++.++..|+ ++-||.
T Consensus 109 T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~-~tkILa 164 (220)
T PRK12653 109 TAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAP-QAKVLA 164 (220)
T ss_pred EEecCHHHHHHHHhcCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCC-CcEEEE
Confidence 33344678888999999999994 111 11 24555555555554 455554
No 252
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.55 E-value=1.7e+02 Score=26.65 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEE--EEechhhHHHHHHHHCCC-----ch
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA--YQVSGEYSMIKAGGALKM-----ID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaa--YqVSGEYaMikaAa~~G~-----id 395 (432)
.-|.++++. ....+.++.|+ +|=+.++ ++.|+.+|+.+ ++|+.+ +-...+-..++.++++|. -+
T Consensus 9 ~~~~~~~~~-~~~~l~~~i~~--ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~ 85 (202)
T cd04726 9 LLDLEEALE-LAKKVPDGVDI--IEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG 85 (202)
T ss_pred CCCHHHHHH-HHHHhhhcCCE--EEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence 345555444 55566777666 5558777 79999999874 799887 333332234466666664 01
Q ss_pred h--hHHHHHHHHHHHHcCccEee---hhcHHH
Q 014017 396 E--QRVMMESLMCLRRAGADIIL---TYFALQ 422 (432)
Q Consensus 396 ~--~~~~~EsL~~ikRAGAd~Ii---TYfA~~ 422 (432)
+ ...+.|.+..+++.|..+++ +..+++
T Consensus 86 ~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~ 117 (202)
T cd04726 86 AAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPE 117 (202)
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHH
Confidence 1 12344556666677777763 555443
No 253
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=49.34 E-value=3.8e+02 Score=29.19 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=109.5
Q ss_pred EEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014017 133 LFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (432)
Q Consensus 133 lFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd 212 (432)
+.|.|-. -+.=.+-++-.|++.+ +.++.++.+.+.|+.++=+.|- +.-|...+- .+++ --..++.|++..|+
T Consensus 3 V~I~DtT-lRDG~Qs~~~~~~~t~-dkl~Ia~~Ld~~Gv~~IE~~gg---atfd~~~~F-l~e~--p~e~l~~l~~~~~~ 74 (467)
T PRK14041 3 VMFVDTT-LRDGHQSLIATRMRTE-DMLPALEAFDRMGFYSMEVWGG---ATFDVCVRF-LNEN--PWERLKEIRKRLKN 74 (467)
T ss_pred eEEEECC-CCccccCcCCccCCHH-HHHHHHHHHHHcCCCEEEecCC---ccchhhhcc-cCCC--HHHHHHHHHHhCCC
Confidence 4555532 1222234555578875 6899999999999999998652 222221111 1222 24688899988888
Q ss_pred eEEEeeecccCCCCCCcceeecCCCcc-ccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCccc
Q 014017 213 LVIYTDVALDPYSSDGHDGIVREDGVI-MNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHV 288 (432)
Q Consensus 213 l~IitDVcLc~YTshGHcGIl~~~g~I-dND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~~v 288 (432)
..+.+ || .|+..+ |.- --|.-++...+.|+ ++|.|+|--.|-+ +.-..+|+.+ .++|+.-.
T Consensus 75 ~~l~~---l~----r~~N~~----G~~~~~dDvv~~fv~~A~---~~Gvd~irif~~lnd~~n~~~~i~~a-k~~G~~v~ 139 (467)
T PRK14041 75 TKIQM---LL----RGQNLV----GYRHYADDVVELFVKKVA---EYGLDIIRIFDALNDIRNLEKSIEVA-KKHGAHVQ 139 (467)
T ss_pred CEEEE---Ee----cccccc----CcccccchhhHHHHHHHH---HCCcCEEEEEEeCCHHHHHHHHHHHH-HHCCCEEE
Confidence 55431 21 111110 111 12334455555554 6799987554333 2333333333 35676333
Q ss_pred eeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhch-hcCCcEEEEcCCCch------hHH
Q 014017 289 SIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADE-SEGADILLVKPGLPY------LDV 361 (432)
Q Consensus 289 ~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di-~EGAD~lMVKPal~Y------LDI 361 (432)
.-++|+- +| . .+ .|-+.+....+ +-|||.|-+|=-.=+ -++
T Consensus 140 ~~i~~t~-------~p---------~--------~t--------~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~L 187 (467)
T PRK14041 140 GAISYTV-------SP---------V--------HT--------LEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYEL 187 (467)
T ss_pred EEEEecc-------CC---------C--------CC--------HHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHH
Confidence 4456642 12 1 12 22233333333 359999987743333 478
Q ss_pred HHHHHhhCCCCeEEEEechhh----HHHHHHHHCC
Q 014017 362 IRLLRDKYPLPIAAYQVSGEY----SMIKAGGALK 392 (432)
Q Consensus 362 I~~vk~~~~lPvaaYqVSGEY----aMikaAa~~G 392 (432)
++.+|+++++|| .+|---.+ +-..+|.++|
T Consensus 188 v~~lk~~~~vpI-~~H~Hnt~GlA~AN~laAieaG 221 (467)
T PRK14041 188 VKALKKKFGVPV-EVHSHCTTGLASLAYLAAVEAG 221 (467)
T ss_pred HHHHHHhcCCce-EEEecCCCCcHHHHHHHHHHhC
Confidence 999999999998 46663322 2334456666
No 254
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=49.11 E-value=2.5e+02 Score=28.75 Aligned_cols=114 Identities=11% Similarity=0.167 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCC---------
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSD--------- 227 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTsh--------- 227 (432)
++.++++++++.|.+.+-+ ++ .+-|+++++.+ |++.++.|.+ .-||..
T Consensus 129 ~~~~~a~~~~~~Gf~~~Ki--Kv-------------------~~~v~avre~~G~~~~l~vDaN-~~w~~~~A~~~~~~l 186 (361)
T cd03322 129 ELLEAVERHLAQGYRAIRV--QL-------------------PKLFEAVREKFGFEFHLLHDVH-HRLTPNQAARFGKDV 186 (361)
T ss_pred HHHHHHHHHHHcCCCeEee--CH-------------------HHHHHHHHhccCCCceEEEECC-CCCCHHHHHHHHHHh
Confidence 5889999999999999887 21 45577777777 4677777876 556521
Q ss_pred Cccee--ecCCCccccHHHHHHHHH----------------HHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCCccc
Q 014017 228 GHDGI--VREDGVIMNDETVHQLCK----------------QAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGFQHV 288 (432)
Q Consensus 228 GHcGI--l~~~g~IdND~Tl~~Lak----------------~Avs~A~-AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v 288 (432)
...++ +.+.-..++.+.+..|.+ .+..+.+ -.+|++-|-=+--|=+...++..+-+--.++
T Consensus 187 ~~~~l~~iEeP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi 266 (361)
T cd03322 187 EPYRLFWMEDPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGV 266 (361)
T ss_pred hhcCCCEEECCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCC
Confidence 11232 222112223333333333 2222333 3599999988887877666666554333334
Q ss_pred eeecc
Q 014017 289 SIMSY 293 (432)
Q Consensus 289 ~ImSY 293 (432)
.+|.+
T Consensus 267 ~~~~h 271 (361)
T cd03322 267 RTGWH 271 (361)
T ss_pred eeecc
Confidence 44433
No 255
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=48.64 E-value=39 Score=32.45 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 402 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~E 402 (432)
..|.+||++ ....+.+..|+ +|=|++- +++|+++|+.+ +.||.+ ...+.|-.+.+.+
T Consensus 12 ~~~~~~a~~-l~~~l~~~v~~--~kvG~~l~~~~G~~~i~~lk~~~~~~~v~~--------------DLK~~Di~~~v~~ 74 (216)
T PRK13306 12 NQDLESAIE-DAKKVAEEVDI--IEVGTILLLAEGMKAVRVLRALYPDKIIVA--------------DTKIADAGKILAK 74 (216)
T ss_pred CCCHHHHHH-HHHHccccCCE--EEEChHHHHHhCHHHHHHHHHHCCCCEEEE--------------EEeecCCcHHHHH
Confidence 668888887 44567776666 7777654 78999999985 677764 2344455555554
Q ss_pred HHHHHHHcCccEeehh
Q 014017 403 SLMCLRRAGADIILTY 418 (432)
Q Consensus 403 sL~~ikRAGAd~IiTY 418 (432)
. +.++|||++.-.
T Consensus 75 ~---~~~~Gad~vTvH 87 (216)
T PRK13306 75 M---AFEAGADWVTVI 87 (216)
T ss_pred H---HHHCCCCEEEEe
Confidence 4 446677765443
No 256
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=48.54 E-value=65 Score=33.39 Aligned_cols=47 Identities=13% Similarity=0.188 Sum_probs=36.0
Q ss_pred HHHHHHHHhchhcCC--cEEEEcCCCch----hHHHHHHHhhCC-CCeEEEEec
Q 014017 333 REALVEAQADESEGA--DILLVKPGLPY----LDVIRLLRDKYP-LPIAAYQVS 379 (432)
Q Consensus 333 ~EAlre~~~Di~EGA--D~lMVKPal~Y----LDII~~vk~~~~-lPvaaYqVS 379 (432)
.|.+.++..=++.|+ |+|-+=.+..+ .++|+.+|++++ +||.+=.|.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~ 149 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG 149 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 455666666677755 99999777665 678999999996 999887664
No 257
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=48.52 E-value=46 Score=32.75 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=37.8
Q ss_pred hhcCCcEEEEcC---CC--chhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 343 ESEGADILLVKP---GL--PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 343 i~EGAD~lMVKP---al--~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.|||.|.|.. +. +=++.|+++++.++ +||.+ ..|..+. +-+.|.|. +|||.+-
T Consensus 158 ~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg--------------NGgI~s~-eda~e~l~----~GAd~Vm 218 (231)
T TIGR00736 158 VDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG--------------NNSIDDI-ESAKEMLK----AGADFVS 218 (231)
T ss_pred HHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE--------------ECCcCCH-HHHHHHHH----hCCCeEE
Confidence 578999999953 32 23899999999985 99876 1344443 33455543 6999874
No 258
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=48.35 E-value=51 Score=31.16 Aligned_cols=72 Identities=21% Similarity=0.164 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 403 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~Es 403 (432)
..|..||++-+. .+.+-.| ++|+++++ .++|+.+|+... |+++ +.+.-|--..+...
T Consensus 7 ~~~~~~a~~~~~-~~~~~v~--~iKig~~l~~~~G~~~v~~l~~~~~-~v~l--------------D~K~~Dig~t~~~~ 68 (213)
T TIGR01740 7 VTTKDEALDLAD-SLGPEIE--VIKVGIDLLLDGGDKIIDELAKLNK-LIFL--------------DLKFADIPNTVKLQ 68 (213)
T ss_pred CCCHHHHHHHHH-hcCCcCc--EEEECHHHHHhcCHHHHHHHHHcCC-CEEE--------------EEeecchHHHHHHH
Confidence 678888877654 3444455 69999887 577888888654 3331 22222333344444
Q ss_pred HHHHHHcCccEeehh
Q 014017 404 LMCLRRAGADIILTY 418 (432)
Q Consensus 404 L~~ikRAGAd~IiTY 418 (432)
...+.++|||++.-.
T Consensus 69 ~~~~~~~gad~vTvh 83 (213)
T TIGR01740 69 YESKIKQGADMVNVH 83 (213)
T ss_pred HHHHHhcCCCEEEEc
Confidence 445667888876543
No 259
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.35 E-value=25 Score=31.95 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH---HHHHHHHHHCCCccceee
Q 014017 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDGRV---GAIRAALDAEGFQHVSIM 291 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV---~aIR~aLD~~Gf~~v~Im 291 (432)
.|.|.+.+.+.|..+ +||+|+=|.||-... ..+.+.|.++|..++.|+
T Consensus 37 ~~v~~e~~v~aa~~~---~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vi 87 (134)
T TIGR01501 37 VLSPQEEFIKAAIET---KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLY 87 (134)
T ss_pred CCCCHHHHHHHHHHc---CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEE
Confidence 678899999988655 999999999997665 556678889998776553
No 260
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=48.17 E-value=1e+02 Score=33.60 Aligned_cols=96 Identities=17% Similarity=0.289 Sum_probs=62.0
Q ss_pred ccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC----chhHHHHHHHhhCCCCeE-EEEec---h-------h-hHHHHHH
Q 014017 325 VIELYANYREALVEAQADESEGADILLVKPGL----PYLDVIRLLRDKYPLPIA-AYQVS---G-------E-YSMIKAG 388 (432)
Q Consensus 325 ~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal----~YLDII~~vk~~~~lPva-aYqVS---G-------E-YaMikaA 388 (432)
|..+..+.+|.+.++.....+|+|+|=.-=.+ .=.+.+.++.+.+++|+. .|.-. | | ..+++.+
T Consensus 27 v~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~~~~~~~~~ll~~~ 106 (529)
T PLN02520 27 VPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLA 106 (529)
T ss_pred EEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCCCCHHHHHHHHHHH
Confidence 33456778888888988888999998322110 012345555556777863 33322 1 1 3567778
Q ss_pred HHCC--Cchhh----HHHHHHHHHHHHcCccEeehhcH
Q 014017 389 GALK--MIDEQ----RVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 389 a~~G--~id~~----~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
++.| |+|-| +-+.+.+...++.|..+|++|+.
T Consensus 107 ~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~ 144 (529)
T PLN02520 107 MELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHN 144 (529)
T ss_pred HHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecC
Confidence 7776 44443 35677788888899999999883
No 261
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=48.16 E-value=87 Score=31.11 Aligned_cols=88 Identities=17% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCc-------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHC--C--CchhhH
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLP-------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--MIDEQR 398 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~-------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~id~~~ 398 (432)
.+...++.++..-+++|||+|=|=-+.+ ...+|+.+++.+++|+..= |-....+++|.+. | +|+.=.
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~~plsID--T~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVDVPLCID--SPNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCCCCEEEe--CCCHHHHHHHHHhCCCCCEEEeCC
Confidence 3557788888888999999998765433 3557888888889998432 4455667777765 4 333211
Q ss_pred H----HHHHHHHHHHcCccEeehhc
Q 014017 399 V----MMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 399 ~----~~EsL~~ikRAGAd~IiTYf 419 (432)
. .-+.+.-+++.|+.+|+...
T Consensus 100 ~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 100 AEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred CCCccCHHHHHHHHHhCCCEEEEec
Confidence 1 12334456788999987543
No 262
>PRK12383 putative mutase; Provisional
Probab=47.91 E-value=32 Score=36.70 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=49.6
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014017 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 154 si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~---A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHc 230 (432)
+++.. ......+.+.|++.+.+ |++.+-..-+.++. +.+.+..+..++.++|+..++++..-=+.+| ..||.
T Consensus 229 ~~~p~-~~v~~~l~~~G~~v~~V-GKi~Di~s~~G~t~~~~~~~t~~~~~~~l~aL~~~~~dlvfvnl~~~D---~~GH~ 303 (406)
T PRK12383 229 GVDPK-VQVPQKLYEAGVPVVLV-GKVADIVNNPYGVSWQNLVDTQRVMDITLDEFNTHPTAFICTNIQETD---LAGHA 303 (406)
T ss_pred CCCCc-chhhhHHHHcCCCEEEE-EEhHHeeccCCcccccccCCHHHHHHHHHHHHhcCCCCEEEEeccCCc---ccccc
Confidence 55543 55566678899998877 77553333334444 4555688899999999887887665444455 55887
Q ss_pred eee
Q 014017 231 GIV 233 (432)
Q Consensus 231 GIl 233 (432)
+-+
T Consensus 304 ~d~ 306 (406)
T PRK12383 304 EDV 306 (406)
T ss_pred CCH
Confidence 744
No 263
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=47.87 E-value=58 Score=33.00 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=53.9
Q ss_pred hhhhhhhCCCCC-CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechh
Q 014017 304 PFREALDSNPRF-GDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGE 381 (432)
Q Consensus 304 PFRdAa~Sap~~-gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGE 381 (432)
-+++|+...-++ ..+| -++. ..|.+||... ++.|||+||.- .+..=|+...++..- .-|=..-.+
T Consensus 174 ~i~~av~~~r~~~~~~k-IeVE----v~tleea~ea----~~~GaDiI~lD-n~~~e~l~~~v~~l~~~~~~~~lea--- 240 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERK-ITVE----ADTIEQALTV----LQASPDILQLD-KFTPQQLHHLHERLKFFDHIPTLAA--- 240 (277)
T ss_pred cHHHHHHHHHHhCCCCC-EEEE----CCCHHHHHHH----HHcCcCEEEEC-CCCHHHHHHHHHHHhccCCCEEEEE---
Confidence 566666554332 2333 6666 5677776554 46899999998 566666655554321 112223444
Q ss_pred hHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 382 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 382 YaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
.|-|++ |.+..+...|+|+|+|-
T Consensus 241 ---------sGGI~~-----~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 241 ---------AGGINP-----ENIADYIEAGIDLFITS 263 (277)
T ss_pred ---------ECCCCH-----HHHHHHHhcCCCEEEeC
Confidence 455665 56678899999999874
No 264
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=47.84 E-value=64 Score=32.79 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=35.9
Q ss_pred HHHHHHHHhchhcCCcEEEEcCC-CchhHHHHHHHhhCC--CCeE
Q 014017 333 REALVEAQADESEGADILLVKPG-LPYLDVIRLLRDKYP--LPIA 374 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMVKPa-l~YLDII~~vk~~~~--lPva 374 (432)
+|||+.+..=.+-|||+|+| |+ +.-.|-|+++.+.++ +|+.
T Consensus 166 deAI~Ra~aY~eAGAD~ifv-~~~~~~~~ei~~~~~~~~~p~pv~ 209 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILI-HSRQKTPDEILAFVKSWPGKVPLV 209 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEe-cCCCCCHHHHHHHHHhcCCCCCeE
Confidence 79999999999999999999 76 467899999999886 5776
No 265
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.74 E-value=2.5e+02 Score=28.86 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCee--------------cC---------CCCCCchHHHHHHHHHHCCCccceeecchhhhc
Q 014017 242 DETVHQLCKQAVSQARAGADVV--------------SP---------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiV--------------AP---------SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyA 298 (432)
++.++..++.|....+||.|.| +| -+-.++|..-+++.+++-- ..+ =..-..|..
T Consensus 138 ~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir-~~~-~~~v~vRis 215 (337)
T PRK13523 138 KETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVK-EVW-DGPLFVRIS 215 (337)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHH-Hhc-CCCeEEEec
Q ss_pred cccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-----------hHHHHHHHh
Q 014017 299 SSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-----------LDVIRLLRD 367 (432)
Q Consensus 299 SsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----------LDII~~vk~ 367 (432)
..-|.+ + --...|++.-+..=.+.|.|+|-|--+..+ ++..+.+|+
T Consensus 216 ~~d~~~-------------------~----G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~ 272 (337)
T PRK13523 216 ASDYHP-------------------G----GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIRE 272 (337)
T ss_pred ccccCC-------------------C----CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHh
Q ss_pred hCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 368 KYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 368 ~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..++||.+=.==-...+...+.+.|+.|
T Consensus 273 ~~~ipVi~~G~i~~~~~a~~~l~~g~~D 300 (337)
T PRK13523 273 HANIATGAVGLITSGAQAEEILQNNRAD 300 (337)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHHcCCCC
No 266
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=47.35 E-value=1.5e+02 Score=28.69 Aligned_cols=79 Identities=33% Similarity=0.349 Sum_probs=58.9
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHH
Q 014017 331 NYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ik 408 (432)
+.++++.-++.=++.|-..+=|==-.+ -++.|++++++++ +-|+|=.| +|. |.+....
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTV---------------l~~-----~~a~~a~ 77 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTV---------------LNP-----EQLRQAV 77 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeC---------------CCH-----HHHHHHH
Confidence 456777766666888888775532222 5899999999884 88988777 554 4567788
Q ss_pred HcCccEeehh-cHHHHHHHHhc
Q 014017 409 RAGADIILTY-FALQAARCLCG 429 (432)
Q Consensus 409 RAGAd~IiTY-fA~~~a~wL~~ 429 (432)
+|||++|+|= |.++++++.++
T Consensus 78 ~aGA~FivsP~~~~~v~~~~~~ 99 (204)
T TIGR01182 78 DAGAQFIVSPGLTPELAKHAQD 99 (204)
T ss_pred HcCCCEEECCCCCHHHHHHHHH
Confidence 9999999984 67888887664
No 267
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.06 E-value=64 Score=31.83 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=27.7
Q ss_pred hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 358 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.++.++++++.+++||.+ .|-+..-+-+.|.| .+|||+|--
T Consensus 222 ~l~~v~~i~~~~~ipvi~---------------~GGI~~~~da~~~l----~aGAd~V~i 262 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIG---------------MGGISSAEDAIEFI----MAGASAVQV 262 (301)
T ss_pred cHHHHHHHHHhCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCceeE
Confidence 588999999999999886 23343333444543 478887753
No 268
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.89 E-value=68 Score=31.42 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 358 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
.++.++++++.+++||.+ .|-+..-+-+.|.| ++|||+|--+
T Consensus 219 ~~~~i~~i~~~~~ipii~---------------~GGI~~~~da~~~l----~~GAd~V~ig 260 (296)
T cd04740 219 ALRMVYQVYKAVEIPIIG---------------VGGIASGEDALEFL----MAGASAVQVG 260 (296)
T ss_pred HHHHHHHHHHhcCCCEEE---------------ECCCCCHHHHHHHH----HcCCCEEEEc
Confidence 479999999999999886 33343323334443 5899988643
No 269
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=46.70 E-value=1.2e+02 Score=28.56 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=36.5
Q ss_pred hhcCCcEE--EE--cCCCch---hHHHHHHHh---hCCCCeEEEEe--chhhHHHHHHHHCCCchhhHHHHHHHHHHHHc
Q 014017 343 ESEGADIL--LV--KPGLPY---LDVIRLLRD---KYPLPIAAYQV--SGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 410 (432)
Q Consensus 343 i~EGAD~l--MV--KPal~Y---LDII~~vk~---~~~lPvaaYqV--SGEYaMikaAa~~G~id~~~~~~EsL~~ikRA 410 (432)
++-|||.+ ++ |.. .+ ++.++++++ ..++|+.. .+ -|..- .+. ++. +.+-++......+
T Consensus 86 ~~~Ga~~v~~~~~~~~~-~~~~~~~~i~~v~~~~~~~g~~~ii-e~~~~g~~~------~~~-~~~-~~i~~~~~~a~~~ 155 (235)
T cd00958 86 VRLGADAVGVTVYVGSE-EEREMLEELARVAAEAHKYGLPLIA-WMYPRGPAV------KNE-KDP-DLIAYAARIGAEL 155 (235)
T ss_pred HHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEE-EEeccCCcc------cCc-cCH-HHHHHHHHHHHHH
Confidence 46799866 33 432 23 334555553 56889875 22 11100 000 122 2333335556688
Q ss_pred CccEeehhcHH
Q 014017 411 GADIILTYFAL 421 (432)
Q Consensus 411 GAd~IiTYfA~ 421 (432)
|||+|-|+|..
T Consensus 156 GaD~Ik~~~~~ 166 (235)
T cd00958 156 GADIVKTKYTG 166 (235)
T ss_pred CCCEEEecCCC
Confidence 99999999863
No 270
>PRK14017 galactonate dehydratase; Provisional
Probab=46.58 E-value=2.8e+02 Score=28.58 Aligned_cols=128 Identities=12% Similarity=0.137 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCC-CCC--HHHHHHHHHHHC-CCeEEEeeecccCCCCCC-----
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYND-NGL--VPRTIWLLKDRY-PDLVIYTDVALDPYSSDG----- 228 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~-~g~--v~raIr~iK~~f-Pdl~IitDVcLc~YTshG----- 228 (432)
+++++++++++.|.+.+.+= +.. |+. .++. .++ -.+-|+++++.+ ||+.++.|.+ ..||-+.
T Consensus 127 ~~~~~a~~~~~~Gf~~~KiK--v~~--~~~----~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN-~~w~~~~A~~~~ 197 (382)
T PRK14017 127 DVAEAARARVERGFTAVKMN--GTE--ELQ----YIDSPRKVDAAVARVAAVREAVGPEIGIGVDFH-GRVHKPMAKVLA 197 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEc--CcC--Ccc----ccccHHHHHHHHHHHHHHHHHhCCCCeEEEECC-CCCCHHHHHHHH
Confidence 58899999999999999882 210 110 0000 011 146788899999 6899999997 6676321
Q ss_pred ------cceeecCCCccccHHHHHHHHHH----------------HHHHH-HcCCCeecCCCCCCchHHHHHHHHHHCCC
Q 014017 229 ------HDGIVREDGVIMNDETVHQLCKQ----------------AVSQA-RAGADVVSPSDMMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 229 ------HcGIl~~~g~IdND~Tl~~Lak~----------------Avs~A-~AGADiVAPSDMMDGrV~aIR~aLD~~Gf 285 (432)
..-.+.+.=..++.+.+..|.++ ...+. ..++|+|-|-=+.-|=|...++..+-+--
T Consensus 198 ~~l~~~~~~~iEeP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~ 277 (382)
T PRK14017 198 KELEPYRPMFIEEPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEA 277 (382)
T ss_pred HhhcccCCCeEECCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHH
Confidence 12223221122344455555441 12222 33599999998888877777777665554
Q ss_pred ccceeecch
Q 014017 286 QHVSIMSYT 294 (432)
Q Consensus 286 ~~v~ImSYS 294 (432)
.++.+|.++
T Consensus 278 ~gi~~~~h~ 286 (382)
T PRK14017 278 YDVALAPHC 286 (382)
T ss_pred cCCeEeecC
Confidence 567777664
No 271
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.56 E-value=51 Score=33.19 Aligned_cols=107 Identities=22% Similarity=0.300 Sum_probs=68.3
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhhhh
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
||.||-+++- +..-.+.++|+|-|-+-+.. |=|...++.+.+..+ .+++|..=.
T Consensus 19 dg~vD~~a~~----~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~-grvpviaG~------------- 80 (299)
T COG0329 19 DGSVDEEALR----RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG-GRVPVIAGV------------- 80 (299)
T ss_pred CCCcCHHHHH----HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC-CCCcEEEec-------------
Confidence 5777755433 33345778898866554432 234444455554444 234443221
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEech
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 380 (432)
| -.|.+||+..+..=.+-|||-+||=|=-.| .+=.+.+.+..++|+.-|++-+
T Consensus 81 --------g------------~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~ 140 (299)
T COG0329 81 --------G------------SNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPS 140 (299)
T ss_pred --------C------------CCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1 347899999999889999999999765332 4455677778899999999743
No 272
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=46.52 E-value=33 Score=35.68 Aligned_cols=102 Identities=16% Similarity=0.151 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCH---HHHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLV---PRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g~v---~raIr~iK~~fPdl~IitDVc---Lc~YTshGHcGI 232 (432)
.+.++.+++.|+..|.+|--+++. .|-..+ ...+-.+ .++|+..|+.- +.|..-++ =|||.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~---~t~~e~l~~~~~~v~~Ak~~G--l~v~~~is~~fg~p~~------- 191 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNIN---CSIEESLVRYREVALAAKKHS--IPVRGYVSCVVGCPIE------- 191 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHcC--CeEEEEEEeeecCCcc-------
Confidence 577888999999999998644431 121111 1122233 35666666653 33322222 36662
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD 281 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD 281 (432)
|.+ +.+.+.+.+-...++|||.|.-.|+.= -.|.++|+.++
T Consensus 192 ----~r~----~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 192 ----GPV----PPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVP 240 (347)
T ss_pred ----CCC----CHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCC
Confidence 332 356666777777889999999999864 23556666543
No 273
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=46.36 E-value=1.2e+02 Score=29.96 Aligned_cols=72 Identities=18% Similarity=0.265 Sum_probs=0.0
Q ss_pred ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014017 150 CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 150 v~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGH 229 (432)
|.|..--++.+..++.+++-||+.+-+ -|+-..... +|+.+++.||+.+|-
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEI---------------Tl~sp~a~e-~I~~l~~~~p~~lIG------------- 68 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEI---------------TLRTPAALE-AIRALAKEFPEALIG------------- 68 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeEEE---------------ecCCCCHHH-HHHHHHHhCcccEEc-------------
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 230 cGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
-|.|.|.++++++ ++|||+.+
T Consensus 69 ------AGTVL~~~q~~~a-------~~aGa~fi 89 (211)
T COG0800 69 ------AGTVLNPEQARQA-------IAAGAQFI 89 (211)
T ss_pred ------cccccCHHHHHHH-------HHcCCCEE
No 274
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=46.14 E-value=58 Score=35.23 Aligned_cols=218 Identities=17% Similarity=0.124 Sum_probs=107.7
Q ss_pred CCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 145 GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 145 ~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
..+-|+--+--|..+.+..+++.......++.-. +. ...++-.+.++++.+++.--..+++.|=
T Consensus 64 A~~GGigvIh~n~~i~~qae~v~~VKv~eim~~~---pv--------tv~p~~tI~eA~~lm~~~~~~~~vVvD~----- 127 (475)
T TIGR01303 64 ARRGGIVILPQDLPIPAVKQTVAFVKSRDLVLDT---PI--------TLAPHDTVSDAMALIHKRAHGAAVVILE----- 127 (475)
T ss_pred HHCCCEEEEeCCCCHHHHHHHHhhcchhhccccC---Ce--------EECCCCCHHHHHHHHHhcCCeEEEEEEC-----
Confidence 4444443332222355556666655555543311 11 3567778889999987654455555541
Q ss_pred CCCCcceeecCCCcc---ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhcccc
Q 014017 225 SSDGHDGIVREDGVI---MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSF 301 (432)
Q Consensus 225 TshGHcGIl~~~g~I---dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsf 301 (432)
+.=-||+.. .++ +++..+..+. ..---.+.|.+ .+..+-+.|.+++...++|+-=.-++-.-.
T Consensus 128 --gklvGIVT~-rDL~~~~~~~~V~dIM-------t~~litv~~~~----sL~eAl~lM~~~~i~~LPVVD~~g~LvGII 193 (475)
T TIGR01303 128 --DRPVGLVTD-SDLLGVDRFTQVRDIM-------STDLVTAPADT----EPRKAFDLLEHAPRDVAPLVDADGTLAGIL 193 (475)
T ss_pred --CEEEEEEEH-HHhhcCCCCCCHHHHc-------cCCceEeCCCC----cHHHHHHHHHHcCCCEEEEEcCCCeEEEEE
Confidence 112466642 111 1222222221 11222232222 344555566777776666653111110000
Q ss_pred chhhhhhh---hCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc----hhHHHHHHHhhC-CCCe
Q 014017 302 YGPFREAL---DSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP----YLDVIRLLRDKY-PLPI 373 (432)
Q Consensus 302 YGPFRdAa---~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~----YLDII~~vk~~~-~lPv 373 (432)
-.+|.+ ...|. .|.+. |+.|-++-+-..+...-+..=+++|+|+|.+=.+.. .+|.|+.+|++| ++||
T Consensus 194 --T~~DLl~~~~~~~~-~d~~g-rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~v 269 (475)
T TIGR01303 194 --TRTGALRATIYTPA-TDAAG-RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPI 269 (475)
T ss_pred --EHHHHHHHHhCCch-hhhcc-CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeE
Confidence 001111 11111 12222 444333333223322333333668999999987765 499999999988 6999
Q ss_pred EEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 374 AAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 374 aaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+=+| .+ .|....+..||||+|-
T Consensus 270 i~g~~---------------~t-----~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 270 VAGNV---------------VS-----AEGVRDLLEAGANIIK 292 (475)
T ss_pred EEecc---------------CC-----HHHHHHHHHhCCCEEE
Confidence 98222 12 3444556678999985
No 275
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=46.03 E-value=1.3e+02 Score=29.80 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeec----
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA---- 220 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVc---- 220 (432)
+.||+ +++.+ ..++.++.+-+.||..|-+ ||. ....+..|+.++.+.-.+.+..+..| .-..+.++++.-
T Consensus 11 q~~~~-~f~~~-~~~~ia~~L~~~GVd~IEvG~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 85 (266)
T cd07944 11 YVNNW-DFGDE-FVKAIYRALAAAGIDYVEIGYRS--SPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDI 85 (266)
T ss_pred cccCc-cCCHH-HHHHHHHHHHHCCCCEEEeecCC--CCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCH
Confidence 57777 78875 5888899999999999887 554 22245667777776555554444432 124577776654
Q ss_pred --ccCCCCCCccee
Q 014017 221 --LDPYSSDGHDGI 232 (432)
Q Consensus 221 --Lc~YTshGHcGI 232 (432)
+.+...+|.+.|
T Consensus 86 ~~l~~a~~~gv~~i 99 (266)
T cd07944 86 DLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHHhcCCcCEE
Confidence 456667787764
No 276
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.86 E-value=1.4e+02 Score=29.54 Aligned_cols=93 Identities=20% Similarity=0.133 Sum_probs=56.1
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
.||+-.++-+ -..+.++.+.+.|+..|-+|-.+.+ -..+.++++..|+.. +.+.. |+| |+.
T Consensus 82 ~~~~~~~p~~-~~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G--~~v~~--~i~-~~~ 142 (275)
T cd07937 82 LVGYRHYPDD-VVELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAG--KHVEG--AIC-YTG 142 (275)
T ss_pred ccCccCCCcH-HHHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCC--CeEEE--EEE-ecC
Confidence 4555445432 3678889999999999988753221 123456777777764 33332 332 111
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG 271 (432)
. + ..|.+.+.+.+-...++|||.|.=.|++=.
T Consensus 143 ~---------~----~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~ 174 (275)
T cd07937 143 S---------P----VHTLEYYVKLAKELEDMGADSICIKDMAGL 174 (275)
T ss_pred C---------C----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 1 1 114445555555567889999999998754
No 277
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=45.78 E-value=30 Score=32.24 Aligned_cols=60 Identities=23% Similarity=0.436 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
++++.++.+.++||++|-|=|+.+ .+.+...|++... +.+-|++++++ .|-||-|+.+-.
T Consensus 5 gi~~kLdyl~~lGv~~I~l~Pi~~----~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~--gi~VilD~V~NH 76 (316)
T PF00128_consen 5 GIIDKLDYLKDLGVNAIWLSPIFE----SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKR--GIKVILDVVPNH 76 (316)
T ss_dssp HHHHTHHHHHHHTESEEEESS-EE----SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHT--TCEEEEEEETSE
T ss_pred HHHHhhHHHHHcCCCceecccccc----cccccccccceeeeccccccchhhhhhhhhhccccc--cceEEEeeeccc
Confidence 689999999999999999987643 2224455544333 24555555554 799999999853
No 278
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=45.25 E-value=2.6e+02 Score=26.12 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=23.3
Q ss_pred hcCCcEEEE---cCC----CchhHHHHHHHhhCCCCeEE
Q 014017 344 SEGADILLV---KPG----LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 344 ~EGAD~lMV---KPa----l~YLDII~~vk~~~~lPvaa 375 (432)
+-|+|.|++ +.. .+-+++|+++++..++|+.+
T Consensus 157 ~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia 195 (233)
T PRK00748 157 DAGVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIA 195 (233)
T ss_pred hcCCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEE
Confidence 348994443 332 24589999999999999887
No 279
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.19 E-value=2e+02 Score=30.39 Aligned_cols=252 Identities=14% Similarity=0.116 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC---eEEEeeecccCCCCCCcceee
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD---LVIYTDVALDPYSSDGHDGIV 233 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd---l~IitDVcLc~YTshGHcGIl 233 (432)
+.|.+.++++.+.-=+.++. ++....-.- -.+| +...++.+++++|+ +-|+. |---.|. |=.
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~--V~ttC~~ei---IGDD----i~~v~~~~~~e~p~~~~~pvi~-v~tpgf~-----g~~ 141 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIG--LLSTGLTET---RGED----IARVVRQFREKHPQHKGTAVVT-VNTPDFK-----GSL 141 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEE--EeCCCcccc---cccC----HHHHHHHHHhhcccccCCeEEE-ecCCCcC-----Cch
Confidence 57999999999976554333 333322111 1223 33455567777774 23331 2222232 211
Q ss_pred cCCCccccHHHHHHHHHHHHHHH------HcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccc-----c-
Q 014017 234 REDGVIMNDETVHQLCKQAVSQA------RAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASS-----F- 301 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A------~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASs-----f- 301 (432)
..| .+.+++.|.++-+... .-...++..+..--|-+..||+.|++.|+.-+.+.-+|.-+-+- |
T Consensus 142 -~~G---~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~ 217 (432)
T TIGR01285 142 -EDG---YAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFS 217 (432)
T ss_pred -HHH---HHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceEEecccccccCCCCCCCccc
Confidence 124 4667777766544321 11256666654445999999999999998544333233211110 0
Q ss_pred --------chhhhhhhhCCCC--CC---------CcccccccccCCCC-CHHHHHHHHHhchhc--CCcE--EEEcCCCc
Q 014017 302 --------YGPFREALDSNPR--FG---------DKKTYVIRVIELYA-NYREALVEAQADESE--GADI--LLVKPGLP 357 (432)
Q Consensus 302 --------YGPFRdAa~Sap~--~g---------DRktYQmd~~~~p~-N~~EAlre~~~Di~E--GAD~--lMVKPal~ 357 (432)
+.-++++..+.-. .+ =++.|.++.+.+|. -.-++..+..+.+.+ |.++ .+-+--.-
T Consensus 218 ~~~~gg~t~eei~~~~~A~lniv~~~~~~~~a~~Lee~~giP~~~~~~p~G~~~t~~~l~~l~~~~g~~~~~~~~~~r~~ 297 (432)
T TIGR01285 218 PITQGGTTLEQIRQIGQSCCTLAIGESMRRAASLLADRCGVPYIVFPSLMGLEAVDAFLHVLMKISGRAVPERFERQRRQ 297 (432)
T ss_pred eeCCCCCcHHHHHhhccCcEEEEEChhHHHHHHHHHHHHCCCeEecCCCcChHHHHHHHHHHHHHHCCCccHHHHHHHHH
Confidence 1112222222110 01 14567777665531 122334444444443 3221 00001112
Q ss_pred hhHHHHHHHhhC-CCCeEEEEechh-hHHHHHHHHCCCchhhHH--------------------HHHHHHHHHHcCccEe
Q 014017 358 YLDVIRLLRDKY-PLPIAAYQVSGE-YSMIKAGGALKMIDEQRV--------------------MMESLMCLRRAGADII 415 (432)
Q Consensus 358 YLDII~~vk~~~-~lPvaaYqVSGE-YaMikaAa~~G~id~~~~--------------------~~EsL~~ikRAGAd~I 415 (432)
++|-+.+.+... +.+++.|--+-- +++.+...+.|+--..-+ ..|....+++.++|+|
T Consensus 298 ~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~dli 377 (432)
T TIGR01285 298 LQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGADLL 377 (432)
T ss_pred HHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCCEE
Confidence 567777766544 578877752222 688888888887421100 1355667888999999
Q ss_pred ehh-cHHHHHHHH
Q 014017 416 LTY-FALQAARCL 427 (432)
Q Consensus 416 iTY-fA~~~a~wL 427 (432)
|+- +.+.+|+-|
T Consensus 378 ig~s~~k~~A~~l 390 (432)
T TIGR01285 378 ITNSHGRALAQRL 390 (432)
T ss_pred EECcchHHHHHHc
Confidence 874 555666543
No 280
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=45.16 E-value=96 Score=28.65 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh-CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|++++= |++.-+++++.+++. .+.|+....-..+...+..+.+.|..+
T Consensus 36 a~~~~~al~~~~---~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivls~~~~~~~~~~al~~Ga~~ 103 (225)
T PRK10046 36 AGNLAQARMMIE---RFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVFD 103 (225)
T ss_pred ECCHHHHHHHHH---hcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCccE
Confidence 568888887764 4678999985 677778999999874 468898887777878888888888653
No 281
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=45.15 E-value=1e+02 Score=31.52 Aligned_cols=83 Identities=29% Similarity=0.453 Sum_probs=53.3
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----cCCC---chhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHH
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADILLV----KPGL---PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----KPal---~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~ 390 (432)
+.|.|+ + +|.+.++..-.+.|+.-+.. .|.+ -|+++++.+|+.++ +.+.++ ...|+..+.. .
T Consensus 75 ~~y~l~----~---eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~-~~~ei~~~~~--~ 144 (351)
T TIGR03700 75 GAYAMS----L---EEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAF-TAVEIHHFSK--I 144 (351)
T ss_pred ccCCCC----H---HHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeC-CHHHHHHHHH--H
Confidence 477787 5 56555555545577754432 3332 46899999999874 666653 3456665542 3
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|..++ |.|..+|.||.|.+.
T Consensus 145 ~g~~~~-----e~l~~LkeAGld~~~ 165 (351)
T TIGR03700 145 SGLPTE-----EVLDELKEAGLDSMP 165 (351)
T ss_pred cCCCHH-----HHHHHHHHcCCCcCC
Confidence 466543 567889999999775
No 282
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.09 E-value=34 Score=33.17 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=52.5
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT 225 (432)
+.+...|++.+ .+.+.++++.+.|+..|.| +|..|. ..|+. +.+-++.+|+.+| + +..
T Consensus 129 ~~~~~~~~~~~-~~~~~~~~~~~~G~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~-~---------~l~ 186 (259)
T cd07939 129 GAEDASRADPD-FLIEFAEVAQEAGADRLRF--------ADTVGI--LDPFT-TYELIRRLRAATD-L---------PLE 186 (259)
T ss_pred eeccCCCCCHH-HHHHHHHHHHHCCCCEEEe--------CCCCCC--CCHHH-HHHHHHHHHHhcC-C---------eEE
Confidence 34555667764 5888888888888877554 233332 22222 4567778888776 2 234
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG 271 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG 271 (432)
-|+|+-.= +. ..-++.-.++|||+|=-|=.-=|
T Consensus 187 ~H~Hn~~G-----------la--~An~laAi~aG~~~vd~s~~G~G 219 (259)
T cd07939 187 FHAHNDLG-----------LA--TANTLAAVRAGATHVSVTVNGLG 219 (259)
T ss_pred EEecCCCC-----------hH--HHHHHHHHHhCCCEEEEeccccc
Confidence 57775321 11 12345556899998855544333
No 283
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=44.96 E-value=80 Score=31.08 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=25.8
Q ss_pred hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 359 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 359 LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++.++++++..++||.+ +|-+..-+-+.|.| ++|||.|--
T Consensus 223 l~~v~~i~~~~~ipvi~---------------~GGI~s~~da~~~l----~~GAd~V~i 262 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIG---------------VGGITSFEDALEFL----MAGASAVQV 262 (300)
T ss_pred HHHHHHHHhcCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCceee
Confidence 58888899888888875 33343333334443 578988653
No 284
>PRK07360 FO synthase subunit 2; Reviewed
Probab=44.61 E-value=1.3e+02 Score=31.09 Aligned_cols=95 Identities=23% Similarity=0.410 Sum_probs=60.7
Q ss_pred ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----cCCCc----hhHHHHHHHhhCC-
Q 014017 300 SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV----KPGLP----YLDVIRLLRDKYP- 370 (432)
Q Consensus 300 sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----KPal~----YLDII~~vk~~~~- 370 (432)
+.|-.|+.- + ++.+.|.|+ + +|.+..+..=.+.|+.-+.. .|... |+|+|+.+|+.++
T Consensus 74 C~fC~~~~~----~--~~~~~y~ls----~---eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~ 140 (371)
T PRK07360 74 CGFCAFRRD----E--GDHGAFWLT----I---AEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD 140 (371)
T ss_pred CccCCcccC----C--CCCCCeeCC----H---HHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC
Confidence 556555431 1 345678888 5 56565555555678765543 56555 7899999999763
Q ss_pred CCeEEEEech-hhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 371 LPIAAYQVSG-EYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 371 lPvaaYqVSG-EYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+-+.++ |. |+..+ +-..|..+ .|.+..+|.||.|.+.
T Consensus 141 i~i~a~--s~~ei~~~--~~~~G~~~-----~e~l~~LkeAGld~~~ 178 (371)
T PRK07360 141 IHLHAF--SPMEVYFA--AREDGLSY-----EEVLKALKDAGLDSMP 178 (371)
T ss_pred cceeeC--CHHHHHHH--HhhcCCCH-----HHHHHHHHHcCCCcCC
Confidence 666555 43 44442 22455433 4778899999999985
No 285
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=44.38 E-value=46 Score=32.60 Aligned_cols=107 Identities=25% Similarity=0.335 Sum_probs=65.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+.+ +.+. -.+.++|+|-+...+.+ +=|..-++.+.+..+ .++.|+.=..
T Consensus 14 ~~dg~id~~~~-~~~i---~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------- 78 (289)
T PF00701_consen 14 NADGSIDEDAL-KRLI---DFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------- 78 (289)
T ss_dssp ETTSSB-HHHH-HHHH---HHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE----------
T ss_pred CCCcCcCHHHH-HHHH---HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc----------
Confidence 45677864433 3333 34457899988776653 224444455555443 3455543211
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
..+.+|++..+..=.+-|||.+||=|=..| .|-.+.+.+..++|+..|+-
T Consensus 79 -----------------------~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~ 135 (289)
T PF00701_consen 79 -----------------------ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNN 135 (289)
T ss_dssp -----------------------SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEB
T ss_pred -----------------------chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEEC
Confidence 335677777777767789999998753222 56667778889999999996
No 286
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.34 E-value=60 Score=31.59 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~L---Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTsh 227 (432)
++++.+ .+.+.++++.+.|+..|.| +|...+ .-+.+-++.+|+.+|.+-|- -|
T Consensus 136 ~~~~~~-~~~~~~~~~~~~G~d~i~l~DT~G~~~P--------------~~v~~lv~~l~~~~~~~~l~---------~H 191 (263)
T cd07943 136 HMASPE-ELAEQAKLMESYGADCVYVTDSAGAMLP--------------DDVRERVRALREALDPTPVG---------FH 191 (263)
T ss_pred cCCCHH-HHHHHHHHHHHcCCCEEEEcCCCCCcCH--------------HHHHHHHHHHHHhCCCceEE---------EE
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
+|+ |+..=..-++.-.+||||+|
T Consensus 192 ~Hn-------------~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 192 GHN-------------NLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred ecC-------------CcchHHHHHHHHHHhCCCEE
No 287
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=44.29 E-value=58 Score=32.40 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.0
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcC-CCeecCCCCC--------CchHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAG-ADVVSPSDMM--------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AG-ADiVAPSDMM--------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
++||.|| .+.+..+.+. +.++| +|-|.+.+.+ +=|..-++.+.+..+ .+++||.-..
T Consensus 13 ~~dg~iD-~~~~~~~i~~---~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~--------- 78 (290)
T TIGR00683 13 NEDGTIN-EKGLRQIIRH---NIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG--------- 78 (290)
T ss_pred CCCCCcC-HHHHHHHHHH---HHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecC---------
Confidence 3456666 4445555553 56689 9999877543 234555555555543 2455543211
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhC-CCCeEEE
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKY-PLPIAAY 376 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~-~lPvaaY 376 (432)
-.|.+|++..+..=.+=|||.|||=|-..| ++-.+++.+.. ++|+..|
T Consensus 79 ------------------------~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 79 ------------------------SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred ------------------------CCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 235677777776667789999999553222 44445665556 7999999
Q ss_pred Eech
Q 014017 377 QVSG 380 (432)
Q Consensus 377 qVSG 380 (432)
+.-+
T Consensus 135 n~P~ 138 (290)
T TIGR00683 135 SIPF 138 (290)
T ss_pred eCcc
Confidence 8653
No 288
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=44.21 E-value=17 Score=35.94 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHcCccEeehh
Q 014017 396 EQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 396 ~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
..+.+.+.+..+.+||||+|.|.
T Consensus 39 ~p~~v~~iH~~yl~AGAdiI~Tn 61 (305)
T PF02574_consen 39 NPELVRQIHRDYLEAGADIITTN 61 (305)
T ss_dssp -HHHHHHHHHHHHHHT-SEEEEC
T ss_pred CHHHHHHHHHHHHHCCCCeEEec
Confidence 46899999999999999999863
No 289
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=44.17 E-value=1.2e+02 Score=26.88 Aligned_cols=64 Identities=20% Similarity=0.113 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+++.... ++..|++++- |.+..+++++.+++...+|+....-.++......+.+.|..|
T Consensus 32 ~~~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~~~~~~~~~l~~Ga~d 98 (221)
T PRK10766 32 AASGAGMREIMQ---NQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVTGRTDSIDRIVGLEMGADD 98 (221)
T ss_pred ECCHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEECCCcHHHHHHHHHcCCCc
Confidence 346677766543 3468999986 667778999999987789998876556665556667777654
No 290
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.04 E-value=78 Score=29.10 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
+...+-+..+..=.+|.|+|--+ +.+.++.+.|++.||++.|..
T Consensus 34 l~~~ll~~~~~~~~~v~llG~~~---------------~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 34 LMPALLELAAQKGLRVFLLGAKP---------------EVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred HHHHHHHHHHHcCCeEEEECCCH---------------HHHHHHHHHHHHHCCCcEEEE
Confidence 55555554444336777878522 567889999999999999884
No 291
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=44.03 E-value=80 Score=28.90 Aligned_cols=63 Identities=35% Similarity=0.473 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCc----------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHH
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLP----------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 399 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~----------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~ 399 (432)
.|.+| ++++. +.|+|.+.+=|-.+ =+|-++.+++.+++||.| -|-|+.+.
T Consensus 103 h~~~e-~~~a~---~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~A---------------lGGI~~~~- 162 (180)
T PF02581_consen 103 HSLEE-AREAE---ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYA---------------LGGITPEN- 162 (180)
T ss_dssp SSHHH-HHHHH---HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEE---------------ESS--TTT-
T ss_pred CcHHH-HHHhh---hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEE---------------EcCCCHHH-
Confidence 35566 33433 79999999866422 289999999999999998 46778765
Q ss_pred HHHHHHHHHHcCccEee
Q 014017 400 MMESLMCLRRAGADIIL 416 (432)
Q Consensus 400 ~~EsL~~ikRAGAd~Ii 416 (432)
+..++++||+.|-
T Consensus 163 ----i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 163 ----IPELREAGADGVA 175 (180)
T ss_dssp ----HHHHHHTT-SEEE
T ss_pred ----HHHHHHcCCCEEE
Confidence 3457789999863
No 292
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=44.01 E-value=50 Score=35.75 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCccceeecchhhhccccchhhhhhhhC---CCCCCC-cccccccccCCCCCHHHHHHHHHhchhcCCcE
Q 014017 274 GAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDS---NPRFGD-KKTYVIRVIELYANYREALVEAQADESEGADI 349 (432)
Q Consensus 274 ~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~S---ap~~gD-RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~ 349 (432)
....+.|.+++...++|+.=.-++..-. -.+|.... .++-.| +..+..- +++..+ .+.+..+..=++.|+|+
T Consensus 181 ~eAl~lm~e~~i~~LPVVd~~g~liGII--T~~DIl~~~~~p~a~~D~~GrL~Vg-aavg~~-~~~~~~~~~l~~ag~d~ 256 (495)
T PTZ00314 181 EEANEVLRESRKGKLPIVNDNGELVALV--SRSDLKKNRGYPNASLDSNGQLLVG-AAISTR-PEDIERAAALIEAGVDV 256 (495)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCcEEEEE--EehHhhhcccCchhhhccCCCEEEE-EEECCC-HHHHHHHHHHHHCCCCE
Confidence 4456677778877777764222111100 00111111 011123 2333332 233333 34466677668889999
Q ss_pred EEEcCC---Cch-hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 350 LLVKPG---LPY-LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 350 lMVKPa---l~Y-LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
|-|=++ ..+ +|.|+.+|+.+ ++||.|=+| .+. |....+..||||.|.
T Consensus 257 i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V---------------~t~-----~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 257 LVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV---------------VTA-----DQAKNLIDAGADGLR 308 (495)
T ss_pred EEEecCCCCchHHHHHHHHHHhhCCCceEEECCc---------------CCH-----HHHHHHHHcCCCEEE
Confidence 999884 334 79999999998 599988222 222 333455678999994
No 293
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=44.00 E-value=1.6e+02 Score=28.92 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=57.6
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcce
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTshGHcG 231 (432)
+.++ .+.+.++.+++.|++.+.+.|..- +..+=...=-.+.++...+.. .++-|++=|
T Consensus 16 iD~~-~~~~~i~~l~~~Gv~Gi~~~GstG--------E~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv------------ 74 (285)
T TIGR00674 16 VDFA-ALEKLIDFQIENGTDAIVVVGTTG--------ESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT------------ 74 (285)
T ss_pred cCHH-HHHHHHHHHHHcCCCEEEECccCc--------ccccCCHHHHHHHHHHHHHHhCCCCeEEEeC------------
Confidence 4454 688999999999999999988622 111111111123344443333 234444222
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeec---CCCC---CCchHHHHHHHHHHCCCccceeecc
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVS---PSDM---MDGRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA---PSDM---MDGrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
...+.+...++|-..+++|||.|. |.=- -|+-+...++..+.. +++|+=|
T Consensus 75 ---------~~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~---~~pi~lY 130 (285)
T TIGR00674 75 ---------GSNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV---DLPIILY 130 (285)
T ss_pred ---------CCccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC---CCCEEEE
Confidence 112234445556666789999542 2211 145555555555543 4666655
No 294
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=43.89 E-value=44 Score=34.22 Aligned_cols=55 Identities=31% Similarity=0.497 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--h--------HHHHHHHHHHCCC-ccceeecchh
Q 014017 241 NDETVHQLCKQAVSQARAGADVVSPSDMMDG--R--------VGAIRAALDAEGF-QHVSIMSYTA 295 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--r--------V~aIR~aLD~~Gf-~~v~ImSYSa 295 (432)
=.+.|++|+++|....+.|+.++--||---+ | |+++.+.|-++|. .+++|+-=|.
T Consensus 137 L~~aL~~l~~ea~~Av~~G~~ilILsDr~~~~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesg 202 (287)
T PF04898_consen 137 LEEALDRLCEEAEAAVREGANILILSDRNASPDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESG 202 (287)
T ss_dssp HHHHHHHHHHHHHHHHHCT-SEEEEESTC-CTTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEES
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECCCCCCcCcccccHHHHHHHHHHHHHHcCCcceeeEEEecC
Confidence 4788999999999999999999999997653 3 8999999999999 8899876543
No 295
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.64 E-value=1.3e+02 Score=29.29 Aligned_cols=76 Identities=28% Similarity=0.341 Sum_probs=54.7
Q ss_pred CHHHHHHHHHhchhcCCcEE---EEcCCCchhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH
Q 014017 331 NYREALVEAQADESEGADIL---LVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~l---MVKPal~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ 406 (432)
+.++|+.-++.=.+.|-++| +.+|. -++.|+.++++|+ +-|+|=.| ++. |....
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~--~~~~I~~l~~~~p~~~IGAGTV---------------l~~-----~~a~~ 82 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPA--ALEAIRLIAKEVPEALIGAGTV---------------LNP-----EQLAQ 82 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCcc--HHHHHHHHHHHCCCCEEEEeec---------------cCH-----HHHHH
Confidence 55677777776677789877 45664 6999999999884 77777666 333 66777
Q ss_pred HHHcCccEeehh-cHHHHHHHHh
Q 014017 407 LRRAGADIILTY-FALQAARCLC 428 (432)
Q Consensus 407 ikRAGAd~IiTY-fA~~~a~wL~ 428 (432)
...|||++|+|- |.+++.++-.
T Consensus 83 a~~aGA~FivsP~~~~~vi~~a~ 105 (212)
T PRK05718 83 AIEAGAQFIVSPGLTPPLLKAAQ 105 (212)
T ss_pred HHHcCCCEEECCCCCHHHHHHHH
Confidence 888899988874 5566666543
No 296
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.44 E-value=1.1e+02 Score=29.89 Aligned_cols=59 Identities=20% Similarity=0.311 Sum_probs=40.9
Q ss_pred cCCcEEEEcCC--------------CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHc
Q 014017 345 EGADILLVKPG--------------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 410 (432)
Q Consensus 345 EGAD~lMVKPa--------------l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRA 410 (432)
.|+|+|-+==+ -...+|++.+|+.+++||.+ .+++. ++.++ +.|....+..+
T Consensus 123 ~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~v-Kl~~~------------~~~~~-~~~~a~~l~~~ 188 (289)
T cd02810 123 AGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLV-KLSPY------------FDLED-IVELAKAAERA 188 (289)
T ss_pred hCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEE-EeCCC------------CCHHH-HHHHHHHHHHc
Confidence 47888876211 13468999999988999874 45432 23333 56777888899
Q ss_pred CccEeeh
Q 014017 411 GADIILT 417 (432)
Q Consensus 411 GAd~IiT 417 (432)
|||.|..
T Consensus 189 Gad~i~~ 195 (289)
T cd02810 189 GADGLTA 195 (289)
T ss_pred CCCEEEE
Confidence 9999985
No 297
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=43.25 E-value=1.3e+02 Score=27.23 Aligned_cols=87 Identities=22% Similarity=0.339 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEE-------cCCCch-hHHHHHHHhhCCCCe-EEEEec---hhhHHHHHHHHCC--Cc
Q 014017 329 YANYREALVEAQADESEGADILLV-------KPGLPY-LDVIRLLRDKYPLPI-AAYQVS---GEYSMIKAGGALK--MI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMV-------KPal~Y-LDII~~vk~~~~lPv-aaYqVS---GEYaMikaAa~~G--~i 394 (432)
+.+..++++++. +-|+|+|-+ -|..++ +++++.+++.++.|+ +..-|. ....++..+...| +-
T Consensus 11 ~~~~~~~~~~~~---~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 11 FANLGEELKRLE---EAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHHHHHHHH---HcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 667667666664 568998865 344433 689999998765554 224443 2333333222222 11
Q ss_pred hh-hHHHHHHHHHHHHcCccEeehh
Q 014017 395 DE-QRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 395 d~-~~~~~EsL~~ikRAGAd~IiTY 418 (432)
++ .....|.+..++..|..++++-
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 88 AEATDHLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred ccchhhHHHHHHHHHHCCCeEEEEe
Confidence 22 2345677777888888877754
No 298
>PLN00191 enolase
Probab=43.23 E-value=1.1e+02 Score=32.97 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHCCCc-cceeecchhhh-ccccchhhhhhhhCCCCCCCccccccccc------CCCCCHHHHHHHHHhch
Q 014017 272 RVGAIRAALDAEGFQ-HVSIMSYTAKY-ASSFYGPFREALDSNPRFGDKKTYVIRVI------ELYANYREALVEAQADE 343 (432)
Q Consensus 272 rV~aIR~aLD~~Gf~-~v~ImSYSaKy-ASsfYGPFRdAa~Sap~~gDRktYQmd~~------~~p~N~~EAlre~~~Di 343 (432)
.+..|++|.++.||+ +|.| +--. ||.||.. .+.|.++.- .---+..| +.+...++
T Consensus 245 al~ll~eAi~~ag~~~~i~i---~lD~Aase~~~~-------------~~~Y~~~~~~~~~~~~~~~s~~e-~i~~~~~L 307 (457)
T PLN00191 245 GLELLKEAIEKAGYTGKIKI---GMDVAASEFYTK-------------DKKYDLDFKEENNDGSNKKSGDE-LIDLYKEF 307 (457)
T ss_pred HHHHHHHHHHHcCCCCceEE---Eeehhhhhhccc-------------CCceEeeccccCCCcccccCHHH-HHHHHHHH
Confidence 356788888889996 4433 3443 3567731 124554200 00124455 55666777
Q ss_pred hcCCcEEEEcCCCch--hHHHHHHHhhCCCCeEEEEec-hhhHHHHHHHHCCCchh-------hHHHHHHH---HHHHHc
Q 014017 344 SEGADILLVKPGLPY--LDVIRLLRDKYPLPIAAYQVS-GEYSMIKAGGALKMIDE-------QRVMMESL---MCLRRA 410 (432)
Q Consensus 344 ~EGAD~lMVKPal~Y--LDII~~vk~~~~lPvaaYqVS-GEYaMikaAa~~G~id~-------~~~~~EsL---~~ikRA 410 (432)
.|.-+++.+.=-++. +|=.++++++.++||++-... -....++.+.+.|+.|- ---+.|++ .-.+.+
T Consensus 308 ~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~ 387 (457)
T PLN00191 308 VSDYPIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAA 387 (457)
T ss_pred hhcCCcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHC
Confidence 777788777655654 556788888899999996654 34556667777777653 11244444 445788
Q ss_pred CccEeehh
Q 014017 411 GADIILTY 418 (432)
Q Consensus 411 GAd~IiTY 418 (432)
|-.++++.
T Consensus 388 G~~~~ish 395 (457)
T PLN00191 388 GWGVMTSH 395 (457)
T ss_pred CCEEEeCC
Confidence 88888864
No 299
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=43.22 E-value=88 Score=30.85 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=51.3
Q ss_pred HHHhchh-cCCcEEEEcCCC----chhHHHHHHHhhCCCCeEEEE-echhhHHHHHHHHCCC--------chhhHHHHHH
Q 014017 338 EAQADES-EGADILLVKPGL----PYLDVIRLLRDKYPLPIAAYQ-VSGEYSMIKAGGALKM--------IDEQRVMMES 403 (432)
Q Consensus 338 e~~~Di~-EGAD~lMVKPal----~YLDII~~vk~~~~lPvaaYq-VSGEYaMikaAa~~G~--------id~~~~~~Es 403 (432)
+.....+ -|||.|-|=-.. --+|.|+.+|+..++||.... +.=+| ++..|...|. .-...-+-|.
T Consensus 74 ~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~~~~l~~l 152 (260)
T PRK00278 74 EIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALDDEQLKEL 152 (260)
T ss_pred HHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCCHHHHHHH
Confidence 3444444 479998772222 238999999999999998533 45556 6666666653 1012355666
Q ss_pred HHHHHHcCccEeehhcHH
Q 014017 404 LMCLRRAGADIILTYFAL 421 (432)
Q Consensus 404 L~~ikRAGAd~IiTYfA~ 421 (432)
+...+.-|-+.++--...
T Consensus 153 i~~a~~lGl~~lvevh~~ 170 (260)
T PRK00278 153 LDYAHSLGLDVLVEVHDE 170 (260)
T ss_pred HHHHHHcCCeEEEEeCCH
Confidence 666667777765544433
No 300
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.08 E-value=98 Score=29.03 Aligned_cols=150 Identities=20% Similarity=0.220 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
+...+.++.+++.|++.|-| . .|++. -.+.++.+|+.+|.+.+ |+..++
T Consensus 24 ~~~~~~~~~~~~~Gv~~vql--r----~k~~~----------~~e~~~~~~~~~~~~~~------------g~gtvl--- 72 (187)
T PRK07455 24 ELGLQMAEAVAAGGMRLIEI--T----WNSDQ----------PAELISQLREKLPECII------------GTGTIL--- 72 (187)
T ss_pred HHHHHHHHHHHHCCCCEEEE--e----CCCCC----------HHHHHHHHHHhCCCcEE------------eEEEEE---
Confidence 35899999999999999887 1 23331 13577788887774322 222233
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCC
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF 315 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADi-VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~ 315 (432)
.|| .++. | .++|||. +.|.. |=.+...++.+ |. + + ..
T Consensus 73 ---~~d-~~~~----A---~~~gAdgv~~p~~--~~~~~~~~~~~---~~-~-------------~------------i~ 110 (187)
T PRK07455 73 ---TLE-DLEE----A---IAAGAQFCFTPHV--DPELIEAAVAQ---DI-P-------------I------------IP 110 (187)
T ss_pred ---cHH-HHHH----H---HHcCCCEEECCCC--CHHHHHHHHHc---CC-C-------------E------------Ec
Confidence 232 2222 2 4689995 46653 22233333322 21 0 0 01
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 392 (432)
| ..|..|+.+. .+.|||.|=+=|+.+. +|.|+.++..+ ++|+.+ -|
T Consensus 111 G------------~~t~~e~~~A----~~~Gadyv~~Fpt~~~~G~~~l~~~~~~~~~ipvva---------------iG 159 (187)
T PRK07455 111 G------------ALTPTEIVTA----WQAGASCVKVFPVQAVGGADYIKSLQGPLGHIPLIP---------------TG 159 (187)
T ss_pred C------------cCCHHHHHHH----HHCCCCEEEECcCCcccCHHHHHHHHhhCCCCcEEE---------------eC
Confidence 2 1233554333 3589999999888765 79999999999 599887 46
Q ss_pred CchhhHHHHHHHHHHHHcCccEe
Q 014017 393 MIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 393 ~id~~~~~~EsL~~ikRAGAd~I 415 (432)
-|+. |-+..+..+||+.+
T Consensus 160 GI~~-----~n~~~~l~aGa~~v 177 (187)
T PRK07455 160 GVTL-----ENAQAFIQAGAIAV 177 (187)
T ss_pred CCCH-----HHHHHHHHCCCeEE
Confidence 6765 55667778999985
No 301
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=43.05 E-value=20 Score=37.00 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=23.2
Q ss_pred CchhhHHHHHHHHHHHHcCccEeeh
Q 014017 393 MIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 393 ~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++|+.+++-|-+..|.|||||+|+|
T Consensus 38 l~~~peiv~~vh~df~~aGa~ii~T 62 (300)
T COG2040 38 LVDEPEIVRNVHADFLRAGADIITT 62 (300)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEee
Confidence 5788999999999999999999986
No 302
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.00 E-value=41 Score=32.99 Aligned_cols=53 Identities=30% Similarity=0.515 Sum_probs=43.0
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 141 ~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
+..|..+||++ -..|+..++++|.+-|.|||. .. . | ..-|+.||.-||++-+|
T Consensus 110 ~~~i~~iPG~~-------TpsEi~~A~~~Ga~~vKlFPA--~~---------~---G--~~~ikal~~p~p~i~~~ 162 (222)
T PRK07114 110 RRKVPYSPGCG-------SLSEIGYAEELGCEIVKLFPG--SV---------Y---G--PGFVKAIKGPMPWTKIM 162 (222)
T ss_pred HcCCCEeCCCC-------CHHHHHHHHHCCCCEEEECcc--cc---------c---C--HHHHHHHhccCCCCeEE
Confidence 46899999992 367899999999999999994 11 1 3 56799999999998776
No 303
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=42.92 E-value=47 Score=32.73 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=52.0
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHc 230 (432)
+|...+ .+++.++++.+.|+..|.| +|..|. ..|.. +.+-++.+|+++|++. ..-|+|+
T Consensus 146 ~~~~~~-~~~~~~~~~~~~g~~~i~l--------~DT~G~--~~P~~-v~~lv~~l~~~~~~~~---------l~~H~Hn 204 (273)
T cd07941 146 YKANPE-YALATLKAAAEAGADWLVL--------CDTNGG--TLPHE-IAEIVKEVRERLPGVP---------LGIHAHN 204 (273)
T ss_pred CCCCHH-HHHHHHHHHHhCCCCEEEE--------ecCCCC--CCHHH-HHHHHHHHHHhCCCCe---------eEEEecC
Confidence 466664 5788899999999998654 233442 22332 4678899999999832 3348886
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
-.= .=..-++.-.++|||.|--|
T Consensus 205 d~G-------------la~An~laA~~aGa~~id~s 227 (273)
T cd07941 205 DSG-------------LAVANSLAAVEAGATQVQGT 227 (273)
T ss_pred CCC-------------cHHHHHHHHHHcCCCEEEEe
Confidence 431 11223455567899988644
No 304
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=42.83 E-value=2.6e+02 Score=28.44 Aligned_cols=101 Identities=22% Similarity=0.319 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC-CCCCCCcccCc---CcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCcce
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV-PDALKSPTGDE---AYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi-~~~~Kd~~gs~---A~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc~YTshGHcG 231 (432)
++...|+++.+.|+-.+.|==.+ |+ | +|.. ..-+-.-...-|++.++.. +|++|++=+ |.|..
T Consensus 89 ~v~~tv~~~~~aG~agi~IEDq~~pK--~--cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiART--Da~~~----- 157 (285)
T TIGR02317 89 NVARTVREMEDAGAAAVHIEDQVLPK--R--CGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIART--DARAV----- 157 (285)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCcc--c--cCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEc--Ccccc-----
Confidence 47888999999999998881110 11 1 1211 1111112234455566543 678887532 22311
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aL 280 (432)
.| -|++|++ +..|++||||+|-+-.+-+ -.+..+.+.+
T Consensus 158 ----~g---~deAI~R----a~ay~~AGAD~vfi~g~~~~e~i~~~~~~i 196 (285)
T TIGR02317 158 ----EG---LDAAIER----AKAYVEAGADMIFPEALTSLEEFRQFAKAV 196 (285)
T ss_pred ----cC---HHHHHHH----HHHHHHcCCCEEEeCCCCCHHHHHHHHHhc
Confidence 12 2566655 7889999999998766554 3444444444
No 305
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=42.51 E-value=1.2e+02 Score=29.04 Aligned_cols=144 Identities=20% Similarity=0.137 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccce-----eec-chhh---hccc--cchhhhh-hhh
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS-----IMS-YTAK---YASS--FYGPFRE-ALD 310 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~-----ImS-YSaK---yASs--fYGPFRd-Aa~ 310 (432)
.+.+.+.+++-...+.|..++-=..--.+-..+||+.-++.+ .++. |+. .-++ -+-+ ...|--+ -+-
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~-~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~ 97 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG-DRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVI 97 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC-CCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHH
Confidence 366677777777788888888766555565566666665544 1211 111 1010 0000 0111110 000
Q ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCC--CCeEEEEechhhHHHHH
Q 014017 311 SNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYP--LPIAAYQVSGEYSMIKA 387 (432)
Q Consensus 311 Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~--lPvaaYqVSGEYaMika 387 (432)
--++.++++++.=..+..|+.+. .+.|||+|.+=|+.. =++-|+.++..++ +|+.+
T Consensus 98 -----~~~~~~~~~~~~G~~t~~E~~~A----~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvva------------ 156 (206)
T PRK09140 98 -----RRAVALGMVVMPGVATPTEAFAA----LRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVFA------------ 156 (206)
T ss_pred -----HHHHHCCCcEEcccCCHHHHHHH----HHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEEE------------
Confidence 01234555533335566665443 358999999844221 2788999998883 99876
Q ss_pred HHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 388 GGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 388 Aa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
-|-++. |.+..+..+|||.|-
T Consensus 157 ---iGGI~~-----~n~~~~~~aGa~~va 177 (206)
T PRK09140 157 ---VGGVTP-----ENLAPYLAAGAAGFG 177 (206)
T ss_pred ---ECCCCH-----HHHHHHHHCCCeEEE
Confidence 355665 456678888999875
No 306
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.49 E-value=64 Score=32.03 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=51.4
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcG 231 (432)
|++.+ .+++.++.+.+.|+..|-| +|..|. ..|. -+.+-++.||+++|++ +..-|+|+-
T Consensus 145 ~~~~~-~~~~~~~~~~~~Ga~~i~l--------~DT~G~--~~P~-~v~~lv~~l~~~~~~~---------~i~~H~Hnd 203 (274)
T cd07938 145 EVPPE-RVAEVAERLLDLGCDEISL--------GDTIGV--ATPA-QVRRLLEAVLERFPDE---------KLALHFHDT 203 (274)
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEE--------CCCCCc--cCHH-HHHHHHHHHHHHCCCC---------eEEEEECCC
Confidence 34554 5888999999999887655 333343 2222 2456788999999874 334588863
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
.= .=..-++.-.+||||+|--|=
T Consensus 204 ~G-------------lA~AN~laA~~aGa~~id~t~ 226 (274)
T cd07938 204 RG-------------QALANILAALEAGVRRFDSSV 226 (274)
T ss_pred CC-------------hHHHHHHHHHHhCCCEEEEec
Confidence 22 011225666799999875443
No 307
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=42.33 E-value=82 Score=29.92 Aligned_cols=86 Identities=22% Similarity=0.288 Sum_probs=49.9
Q ss_pred HHHHHHHHhchhcCCcEEEE-----cCCCch----------hHHHHHHHh-hCCCCeEEEEechhhHHHHHHHHCC--Cc
Q 014017 333 REALVEAQADESEGADILLV-----KPGLPY----------LDVIRLLRD-KYPLPIAAYQVSGEYSMIKAGGALK--MI 394 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMV-----KPal~Y----------LDII~~vk~-~~~lPvaaYqVSGEYaMikaAa~~G--~i 394 (432)
.++++++..-+++|||+|=| .|+... ..+|+.+++ .+++||.-=.- ....+++|.++| |+
T Consensus 19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~--~~~v~~~aL~~g~~~i 96 (210)
T PF00809_consen 19 DEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF--NPEVAEAALKAGADII 96 (210)
T ss_dssp HHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC--CHHHHHHHHHcCcceE
Confidence 57899999999999999988 454455 456667776 66888875433 233444444433 22
Q ss_pred hhhHH---HHHHHHHHHHcCccEeehhcH
Q 014017 395 DEQRV---MMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 395 d~~~~---~~EsL~~ikRAGAd~IiTYfA 420 (432)
+.-.. .-+.+.-+++.|+.+|+.+.-
T Consensus 97 nd~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 97 NDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp EETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred EecccccccchhhhhhhcCCCEEEEEecc
Confidence 21111 123344455566666665443
No 308
>PLN02808 alpha-galactosidase
Probab=42.22 E-value=2.3e+02 Score=30.19 Aligned_cols=100 Identities=17% Similarity=0.159 Sum_probs=65.4
Q ss_pred HHHcCCCeEEE----eecCCCCCCCcccCcCcCC----CCCHHHHHHHHHHHCCCeEEEeeec--ccCCCCCCcceeecC
Q 014017 166 ARDVGVNSVVL----FPKVPDALKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVIYTDVA--LDPYSSDGHDGIVRE 235 (432)
Q Consensus 166 ~~~~GI~sv~L----Fgvi~~~~Kd~~gs~A~n~----~g~v~raIr~iK~~fPdl~IitDVc--Lc~YTshGHcGIl~~ 235 (432)
+.++|.+.|.| |. ...|+.|.--.|+ +| +..-...|+++-=...|++|.- -|. .+|-|
T Consensus 63 l~~~Gy~yv~iDd~W~~----~~rd~~G~~~~d~~rFP~G-~~~lad~iH~~GlkfGiy~~~G~~tC~---~~~pG---- 130 (386)
T PLN02808 63 LAALGYKYINLDDCWAE----LKRDSQGNLVPKASTFPSG-IKALADYVHSKGLKLGIYSDAGTLTCS---KTMPG---- 130 (386)
T ss_pred hHHhCCEEEEEcCCcCC----CCcCCCCCEeeChhhcCcc-HHHHHHHHHHCCCceEEEecCCccccC---CCCCc----
Confidence 46788888877 32 1356666654454 34 3334566666666788888752 221 12333
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCee------cCCCCCCchHHHHHHHHHHCCC
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVV------SPSDMMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiV------APSDMMDGrV~aIR~aLD~~Gf 285 (432)
++.....-|-.+|+=|.|.| .|+..+..++.+++++|++.|-
T Consensus 131 --------s~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~tGR 178 (386)
T PLN02808 131 --------SLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNSGR 178 (386)
T ss_pred --------chHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHhCC
Confidence 24444556778999999987 3666788999999999999883
No 309
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=42.14 E-value=1.4e+02 Score=26.47 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..+..+++.... +..|++++= |.+.-+++++.+++...+|+....-..+......+.+.|..+
T Consensus 31 ~~~~~~~~~~~~----~~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 96 (232)
T PRK10955 31 AHDGEQALDLLD----DSIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLTARGSELDRVLGLELGADD 96 (232)
T ss_pred eCCHHHHHHHhh----cCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCE
Confidence 346677776542 357998885 566668899999987779999988777888888888888754
No 310
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=42.10 E-value=2.4e+02 Score=26.94 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHhchhcCCcEEEEcCCCc--------hhHHHHHHHh-hCCCCeEE-EEech----------h-hHHHH
Q 014017 328 LYANYREALVEAQADESEGADILLVKPGLP--------YLDVIRLLRD-KYPLPIAA-YQVSG----------E-YSMIK 386 (432)
Q Consensus 328 ~p~N~~EAlre~~~Di~EGAD~lMVKPal~--------YLDII~~vk~-~~~lPvaa-YqVSG----------E-YaMik 386 (432)
...+..|++.+++. ++.|||+|=..=... -.++++.++. ..++|+.. |.-.. + +..++
T Consensus 7 ~~~~~~~~~~~~~~-~~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~ 85 (228)
T TIGR01093 7 TAPDLEEALATAEK-ICKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEEYLEELK 85 (228)
T ss_pred cCCCHHHHHHHHHH-hccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHHH
Confidence 35667776665554 489999986532211 1234444443 24688543 33221 2 34556
Q ss_pred HHHHCC---Cchhh-----HHHHHHHHHHHHcCccEeehhc
Q 014017 387 AGGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 387 aAa~~G---~id~~-----~~~~EsL~~ikRAGAd~IiTYf 419 (432)
.++..+ ++|-+ +.+.|.+...++.|..+|+||+
T Consensus 86 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H 126 (228)
T TIGR01093 86 RAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYH 126 (228)
T ss_pred HHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEecc
Confidence 664433 34433 3445555667889999999997
No 311
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=41.82 E-value=3.2e+02 Score=26.12 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEec-----hhh-HHHHHHHHCCCchh---hHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVS-----GEY-SMIKAGGALKMIDE---QRV 399 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVS-----GEY-aMikaAa~~G~id~---~~~ 399 (432)
+.+..+ +.+...+..++.|+|.|.|+. .-+.+.+-+...+-|.+---. |-+ ..+++|+++|..=| ..+
T Consensus 65 ~~~~~~-~~~~~~~~~~~~d~v~v~~~~--~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~ 141 (237)
T PRK00912 65 ASNPSK-LRGLVGKFRKKVDVLAVHGGD--EKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDI 141 (237)
T ss_pred cCCHHH-HHHHHHhccCcccEEEEeCCC--HHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHh
Confidence 444444 666777788899999999886 344355555544444443322 222 66788888775422 111
Q ss_pred -----------H---HHHHHHHHHcCccEeehhcHH
Q 014017 400 -----------M---MESLMCLRRAGADIILTYFAL 421 (432)
Q Consensus 400 -----------~---~EsL~~ikRAGAd~IiTYfA~ 421 (432)
+ .+.+...++.|+-+||+..|-
T Consensus 142 ~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh 177 (237)
T PRK00912 142 LKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAM 177 (237)
T ss_pred hhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCC
Confidence 1 367778888999999998763
No 312
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=41.81 E-value=1.9e+02 Score=26.66 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeE
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIA 374 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPva 374 (432)
--|.++|++-+.. ++.|.|++ |=++++ +++|+.+|+.+ +.++.
T Consensus 8 ~~~~~~a~~~~~~-l~~~v~~i--ev~~~l~~~~g~~~i~~l~~~~~~~~i~ 56 (206)
T TIGR03128 8 LLDIEEALELAEK-VADYVDII--EIGTPLIKNEGIEAVKEMKEAFPDRKVL 56 (206)
T ss_pred CCCHHHHHHHHHH-cccCeeEE--EeCCHHHHHhCHHHHHHHHHHCCCCEEE
Confidence 5577887775553 47787765 445444 89999999986 34444
No 313
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=41.74 E-value=47 Score=35.34 Aligned_cols=57 Identities=28% Similarity=0.486 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC-----cC-----CCCCHHHHHHHHHHHCCCeEE
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA-----YN-----DNGLVPRTIWLLKDRYPDLVI 215 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A-----~n-----~~g~v~raIr~iK~~fPdl~I 215 (432)
.+.+.|+++.++|.+.|+++++ |+--..+..... .| -|..+++.+..+++++|++.|
T Consensus 262 ~~~~~l~~Ly~lGARk~vV~nl-pPlGC~P~~~~~~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~i 328 (408)
T PRK15381 262 QQIDDIEKIISGGVNNVLVMGI-PDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKI 328 (408)
T ss_pred HHHHHHHHHHHcCCcEEEEeCC-CCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 4677889999999999999985 543333332211 11 345667888889999998644
No 314
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=41.69 E-value=51 Score=32.07 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=26.3
Q ss_pred ccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecc
Q 014017 188 TGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221 (432)
Q Consensus 188 ~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcL 221 (432)
.|.+-+-..| .+.|+.||+.||+..|+.|.=+
T Consensus 34 VG~~L~~~~G--~~~i~~lk~~~~~~~IflDlKl 65 (218)
T PRK13305 34 AGTILCLNEG--LGAVKALREQCPDKIIVADWKV 65 (218)
T ss_pred ECHHHHHHhC--HHHHHHHHHhCCCCEEEEEeec
Confidence 4555677777 4899999999999999999876
No 315
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=41.63 E-value=1.9e+02 Score=29.40 Aligned_cols=182 Identities=14% Similarity=0.131 Sum_probs=97.1
Q ss_pred hhhHHHHHHHHHHcC--CCeEEEeecCCCCCCCcc-cCc---CcCCCCCHHHHHHHHHH---------------------
Q 014017 156 RHGLVQEVAKARDVG--VNSVVLFPKVPDALKSPT-GDE---AYNDNGLVPRTIWLLKD--------------------- 208 (432)
Q Consensus 156 ~~~l~~~v~~~~~~G--I~sv~LFgvi~~~~Kd~~-gs~---A~n~~g~v~raIr~iK~--------------------- 208 (432)
|...++-|.++.+.| +-..+|||. +...|.. .-+ +-++.--.++|+.++|+
T Consensus 10 d~~~l~av~~a~~~g~~~~~~ilvg~--~~~~~~~~~~~ii~~~~~~~aa~~av~lv~~G~aD~lmkG~i~T~~~lravl 87 (271)
T TIGR02709 10 QPEILQLVKKALKEAEQPLQFIVFDT--NENLDTENLWKYVHCSDEAAVAQEAVSLVATGQAQILLKGIIQTHTLLKEML 87 (271)
T ss_pred CHHHHHHHHHHHHcCCceeEEEEEcC--cccCCcccCeeEEECCChHHHHHHHHHHHHCCCCCEEEcCCcCcHHHHHHHH
Confidence 456889999999999 577888885 3333322 111 11111112222222221
Q ss_pred ----HCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCC
Q 014017 209 ----RYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEG 284 (432)
Q Consensus 209 ----~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~G 284 (432)
..|.--+++-+++-+.-. |--++-.|.-|+-+.|++++++++..-++ ..| . -|
T Consensus 88 ~~~~gl~~~~~~S~v~i~~~p~--~~~l~~tD~~vn~~P~~eqk~~I~~nA~~-----------------~ar-~---lG 144 (271)
T TIGR02709 88 KSEHQLKNKPILSHVAMVELPA--GKTFLLTDCAMNIAPTQATLIEIVENAKE-----------------VAQ-K---LG 144 (271)
T ss_pred HHHcCCCCCCeeEEEEEEEecC--CCEEEEECCCccCCcCHHHHHHHHHHHHH-----------------HHH-H---cC
Confidence 124444666666554423 22333357788889999999999776544 233 2 37
Q ss_pred C--ccceeecchhhhccccchhh-hhhh------hCCCCCCCcccccccccCCCCCHHHHHHHH--HhchhcCCcEEEEc
Q 014017 285 F--QHVSIMSYTAKYASSFYGPF-REAL------DSNPRFGDKKTYVIRVIELYANYREALVEA--QADESEGADILLVK 353 (432)
Q Consensus 285 f--~~v~ImSYSaKyASsfYGPF-RdAa------~Sap~~gDRktYQmd~~~~p~N~~EAlre~--~~Di~EGAD~lMVK 353 (432)
+ -+|+++|||.++... .|- .++. +..|.+-----.|+| -+=..|+.+.- .-.+...||+|++
T Consensus 145 ie~PkVAlLS~se~~s~~--~~st~~a~~l~~~~~~~~~~~vdGpl~~D----~Al~~e~a~~K~~~s~vaG~AniLI~- 217 (271)
T TIGR02709 145 LHHPKIALLSAAENFNPK--MPSSVLAKEVTAHFNDQQEATVFGPLSLD----LATSEEAVAHKRYSGPIMGDADILVV- 217 (271)
T ss_pred CCCCeEEEEecccCCCCC--CchHHHHHHHHHHHHhCCCCEEEecCchh----hhcCHHHHHhhCCCCCCCCcCCEEEc-
Confidence 7 689999999887443 222 2221 111222111134555 32122332211 2234577888766
Q ss_pred CCCchhHHHHHHHhhC
Q 014017 354 PGLPYLDVIRLLRDKY 369 (432)
Q Consensus 354 Pal~YLDII~~vk~~~ 369 (432)
|.+--=.|+.++-..+
T Consensus 218 PnleaGNi~yK~l~~~ 233 (271)
T TIGR02709 218 PTIDVGNCLYKSLTLF 233 (271)
T ss_pred CChHHHHHHHHHHHHh
Confidence 7766666766654443
No 316
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=41.49 E-value=3.5e+02 Score=26.42 Aligned_cols=114 Identities=19% Similarity=0.246 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCCeEEEe-ecCCCCCCCcccCcC-cCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSVVLF-PKVPDALKSPTGDEA-YNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LF-gvi~~~~Kd~~gs~A-~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTshGHcGIl~ 234 (432)
.+.+.+..+.++||+.|++. |- ++ +....-++ -..+.-....|+.+|+.+ +++.|- .--|- .||-..-
T Consensus 74 ~l~~~L~~~~~~Gi~~iL~l~GD-~~--~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~ig----va~yP-e~hp~~~- 144 (274)
T cd00537 74 ELQSILLGAHALGIRNILALRGD-PP--KGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIG----VAAYP-EGHPEAP- 144 (274)
T ss_pred HHHHHHHHHHHCCCCeEEEeCCC-CC--CCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccc----cccCC-CcCCCCC-
Confidence 58889999999999999998 53 22 21110001 012223456777777765 332211 11221 4443322
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCcccee
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSI 290 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~I 290 (432)
+-++-++.|.+ -.+||||.+=.-=--| ..+....+.+.+.|. +++|
T Consensus 145 -----~~~~~~~~L~~----Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi-~vPI 191 (274)
T cd00537 145 -----SLEEDIKRLKR----KVDAGADFIITQLFFDNDAFLRFVDRCRAAGI-TVPI 191 (274)
T ss_pred -----CHHHHHHHHHH----HHHCCCCEEeecccccHHHHHHHHHHHHHcCC-CCCE
Confidence 12344444433 3467999999888888 777788888888886 4444
No 317
>PLN02743 nicotinamidase
Probab=41.40 E-value=90 Score=30.69 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=54.9
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH---HHHHHHHHH-C--C--CeEEEeeecccCCCCCCcceeecCC
Q 014017 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP---RTIWLLKDR-Y--P--DLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 165 ~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~---raIr~iK~~-f--P--dl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
.+.+.||+.+++.|+..+ .-|. -++|...+. | | +++|++|.|- .|+...|.+-.-++
T Consensus 145 ~Lr~~gI~~liv~Gv~T~--------------~CV~~~~sTardA~~~Gy~~~~~~V~Vv~DA~a-t~d~~~h~~~~~~~ 209 (239)
T PLN02743 145 WVNNNKIKVILVVGICTD--------------ICVLDFVASALSARNHGILPPLEDVVVYSRGCA-TYDLPLHVAKTIKG 209 (239)
T ss_pred HHHHCCCCEEEEEEeCcc--------------hhccChHHHHHHHHHcCCCCCCceEEEeCCccc-cCChhhhhhhhhcc
Confidence 467899999999997332 2332 344444444 5 2 7999999997 46788898765456
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
|...-.++++.++--. ++..||.||.
T Consensus 210 ~~~~~~~~~~~~~~~~--~~~~~~~v~~ 235 (239)
T PLN02743 210 ALAHPQELMHHMGLYM--AKGRGAKVVS 235 (239)
T ss_pred ccCCCHHHHHHHHHHH--HHhCCcEeee
Confidence 7667777777655432 2345777763
No 318
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.36 E-value=2.9e+02 Score=25.83 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=23.1
Q ss_pred hhcCCcEEEEc--CCCc--hhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVK--PGLP--YLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVK--Pal~--YLDII~~vk~~~~lPvaa 375 (432)
.+.|||.|-|= ++.+ -++.++.+|+..++||..
T Consensus 41 ~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~ 77 (217)
T cd00331 41 EKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLR 77 (217)
T ss_pred HHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEE
Confidence 45799999762 2211 247788888888999985
No 319
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.34 E-value=28 Score=34.50 Aligned_cols=146 Identities=29% Similarity=0.414 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCccceeecch--------hhhccccch
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYT--------AKYASSFYG 303 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGr-----------V~aIR~aLD~~Gf~~v~ImSYS--------aKyASsfYG 303 (432)
.-+..|+++....-.+|||++= -|.|||+ |.++|+-++...|-||-.|--. +|=--+.|.
T Consensus 14 ~dfanL~~e~~~~l~~GadwlH-lDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~t 92 (224)
T KOG3111|consen 14 SDFANLAAECKKMLDAGADWLH-LDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFT 92 (224)
T ss_pred cchHHHHHHHHHHHHcCCCeEE-EeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEE
Confidence 3467789999999999999986 5999997 8999999999999888877422 222223333
Q ss_pred hhhhhhhCCCC--------CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEE---EcCCCc---h----hHHHHHH
Q 014017 304 PFREALDSNPR--------FGDKKTYVIRVIELYANYREALVEAQADESEGADILL---VKPGLP---Y----LDVIRLL 365 (432)
Q Consensus 304 PFRdAa~Sap~--------~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lM---VKPal~---Y----LDII~~v 365 (432)
=.-|++++ |. .|=|-.--+. |+..-|.+.... +=.||++ |+|+.- | ++=++.+
T Consensus 93 fH~E~~q~-~~~lv~~ir~~Gmk~G~alk----PgT~Ve~~~~~~----~~~D~vLvMtVePGFGGQkFme~mm~KV~~l 163 (224)
T KOG3111|consen 93 FHYEATQK-PAELVEKIREKGMKVGLALK----PGTPVEDLEPLA----EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWL 163 (224)
T ss_pred EEEeeccC-HHHHHHHHHHcCCeeeEEeC----CCCcHHHHHHhh----ccccEEEEEEecCCCchhhhHHHHHHHHHHH
Confidence 23344433 11 2444455566 777777665543 3456654 688731 1 5666677
Q ss_pred HhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 366 RDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 366 k~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|++++- ---||-|- +=.++..++-.|||++|+.
T Consensus 164 R~kyp~--l~ievDGG-----------------v~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 164 REKYPN--LDIEVDGG-----------------VGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred HHhCCC--ceEEecCC-----------------cCcchHHHHHHcCCCEEEe
Confidence 766643 34466442 2245667778889999885
No 320
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=41.30 E-value=1.6e+02 Score=29.99 Aligned_cols=92 Identities=22% Similarity=0.218 Sum_probs=53.8
Q ss_pred cchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc---------CCC-----chhHHHHHHH
Q 014017 301 FYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK---------PGL-----PYLDVIRLLR 366 (432)
Q Consensus 301 fYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK---------Pal-----~YLDII~~vk 366 (432)
-|...|+...+.|-+.+--..|.. +.+..+ ++++...+ +||.+=+. |.. .|+|.|+.++
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~----~~~~~~-~~~~i~~~--~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~ 174 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLN----GYGVEE-ARRAVEMI--EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELV 174 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccC----CCCHHH-HHHHHHhc--CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHH
Confidence 344455555555655544445553 333333 44444444 46665443 221 1468999999
Q ss_pred hhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 367 DKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 367 ~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+++||.+=. +| .|.. .|....+.++|+|.|.
T Consensus 175 ~~~~vPVivK~-~g----------~g~s------~~~a~~l~~~Gvd~I~ 207 (326)
T cd02811 175 KALSVPVIVKE-VG----------FGIS------RETAKRLADAGVKAID 207 (326)
T ss_pred HhcCCCEEEEe-cC----------CCCC------HHHHHHHHHcCCCEEE
Confidence 99999999543 23 1211 4666778889999998
No 321
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=41.08 E-value=53 Score=32.22 Aligned_cols=92 Identities=30% Similarity=0.341 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCeecCCC--------------CCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhh-----h
Q 014017 249 CKQAVSQARAGADVVSPSD--------------MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA-----L 309 (432)
Q Consensus 249 ak~Avs~A~AGADiVAPSD--------------MMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdA-----a 309 (432)
++||----+|||-.|--.+ |-|= .-|++..+.- .+++|+-+ =-|-|=|| +
T Consensus 24 ~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP--~~I~eI~~aV---sIPVMAK~------RIGHfvEAqiLeal 92 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDP--KMIKEIMDAV---SIPVMAKV------RIGHFVEAQILEAL 92 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--H--HHHHHHHHH----SSEEEEEE------ETT-HHHHHHHHHT
T ss_pred HHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCH--HHHHHHHHhe---Eeceeecc------ccceeehhhhHHHh
Confidence 3466666778887664322 3331 2355555543 47777542 34555443 2
Q ss_pred h---------CCCC----CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC
Q 014017 310 D---------SNPR----FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG 355 (432)
Q Consensus 310 ~---------Sap~----~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa 355 (432)
+ -+|. +-||..|+.+.|-=-+|..||||. |.|||.||=.|=-
T Consensus 93 gVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGarnLGEALRR----I~EGAaMIRtKGE 147 (208)
T PF01680_consen 93 GVDYIDESEVLTPADEENHIDKHNFKVPFVCGARNLGEALRR----IAEGAAMIRTKGE 147 (208)
T ss_dssp T-SEEEEETTS--S-SS----GGG-SS-EEEEESSHHHHHHH----HHTT-SEEEEETT
T ss_pred CCceeccccccccccccccccchhCCCCeEecCCCHHHHHhh----HHhhhhhhcccCC
Confidence 1 2444 358889999866666899998887 5799999999943
No 322
>PRK10200 putative racemase; Provisional
Probab=41.00 E-value=83 Score=30.40 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCeec-CCCC---------------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 242 DETVHQLCKQAVSQARAGADVVS-PSDM---------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVA-PSDM---------------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
+.-.+.|.+.+-.+.++|||+|+ |+-- +=|-+.++..++.+.|..+|+||+=.+-..|.||.-.
T Consensus 58 ~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iPii~ii~~~~~~~~~~~~~~VglLaT~~Ti~s~~Y~~~ 137 (230)
T PRK10200 58 DKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLPFLHIADATGRAITGAGMTRVALLGTRYTMEQDFYRGR 137 (230)
T ss_pred chHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCCEeehHHHHHHHHHHcCCCeEEEeccHHHHHHhHHHHH
Confidence 45678899999999999999875 2211 1134556666777789999999999999999999854
No 323
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=40.95 E-value=23 Score=35.60 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred chhhHHHHHHHHHHHHcCccEeeh
Q 014017 394 IDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++..+.|.+.+..+.+||||+|.|
T Consensus 42 ~~~Pe~V~~vH~~yl~AGadiI~T 65 (304)
T PRK09485 42 LENPELIYQVHLDYFRAGADCAIT 65 (304)
T ss_pred ccChHHHHHHHHHHHHhCCCEEEe
Confidence 567789999999999999999865
No 324
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=40.83 E-value=70 Score=27.57 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.1
Q ss_pred hhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEEEEec
Q 014017 343 ESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAAYQVS 379 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaaYqVS 379 (432)
.+-|+|+|.|-...+| .++++.+++.+ ++|+...-..
T Consensus 81 ~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 81 RAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred HHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 5669999999999885 77899999988 7998888653
No 325
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=40.75 E-value=1.6e+02 Score=31.19 Aligned_cols=184 Identities=20% Similarity=0.239 Sum_probs=111.7
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHH
Q 014017 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLK 207 (432)
Q Consensus 131 ~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~L---Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK 207 (432)
-|+||.-+++ -+.+| .+.+|+++....++|+. ||...+ -++|+.|-
T Consensus 97 ~PVFvDid~~-----------T~nid---~~~ie~aIt~~tKAIipVhl~G~~~d-----------------m~~i~~la 145 (374)
T COG0399 97 KPVFVDIDPD-----------TLNID---PDLIEAAITPRTKAIIPVHLAGQPCD-----------------MDAIMALA 145 (374)
T ss_pred eEEEEecCCc-----------ccCCC---HHHHHHHcccCCeEEEEehhccCCCC-----------------HHHHHHHH
Confidence 5999985442 12243 56777777777888775 665221 35888888
Q ss_pred HHCCCeEEEeeec---ccCCC-----CCCcceeec----------CCC-ccccHHHHHHHHHHHHHHHHcC-------CC
Q 014017 208 DRYPDLVIYTDVA---LDPYS-----SDGHDGIVR----------EDG-VIMNDETVHQLCKQAVSQARAG-------AD 261 (432)
Q Consensus 208 ~~fPdl~IitDVc---Lc~YT-----shGHcGIl~----------~~g-~IdND~Tl~~Lak~Avs~A~AG-------AD 261 (432)
+++ +|.||-|-| =+.|- +-||||++. |+| .+-||+.+...++.--.|.+.. ..
T Consensus 146 ~~~-~l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~ 224 (374)
T COG0399 146 KRH-GLPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHE 224 (374)
T ss_pred HHc-CCeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceee
Confidence 876 699999999 45554 678888863 233 6789988888888888887765 44
Q ss_pred eecCCCCCCchHHHHHHH----HHHCCCccceeecchhhhccccchhhhhhh-hCCCC--CCCcccccccccCCCCC--H
Q 014017 262 VVSPSDMMDGRVGAIRAA----LDAEGFQHVSIMSYTAKYASSFYGPFREAL-DSNPR--FGDKKTYVIRVIELYAN--Y 332 (432)
Q Consensus 262 iVAPSDMMDGrV~aIR~a----LD~~Gf~~v~ImSYSaKyASsfYGPFRdAa-~Sap~--~gDRktYQmd~~~~p~N--~ 332 (432)
.++=..-|+.-=.||.-+ ||+.-..+ .+.+..|.--|.+.- -..|. .+.+..|++-.+.++.. .
T Consensus 225 ~~G~N~rm~~iqAAigl~QL~~l~~~~~~R-------~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~ 297 (374)
T COG0399 225 ELGYNYRLTEIQAAIGLAQLERLDEINERR-------REIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGIS 297 (374)
T ss_pred ecccccCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCC
Confidence 466677777666666533 33332222 122222333333221 11111 24467788876777753 5
Q ss_pred HHHHHHHHhchhcCCcEEEEcC
Q 014017 333 REALVEAQADESEGADILLVKP 354 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMVKP 354 (432)
|+.+.+.+.+..-| -.+-.+|
T Consensus 298 R~~l~~~L~~~gi~-~~~~~~P 318 (374)
T COG0399 298 RDALMESLKEAGVG-AVVYFRP 318 (374)
T ss_pred HHHHHHHHHhCCCC-ceEEeec
Confidence 67788777665444 3355566
No 326
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=40.68 E-value=41 Score=32.56 Aligned_cols=71 Identities=21% Similarity=0.423 Sum_probs=49.0
Q ss_pred CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe--e
Q 014017 141 DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT--D 218 (432)
Q Consensus 141 ~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit--D 218 (432)
+..|..+||+. -..|+..++++|.+.|.|||- .. .| | ..-|+.||.-||++-+|. -
T Consensus 99 ~~~i~~iPG~~-------TptEi~~A~~~Ga~~vKlFPA--~~----~G-------G--~~yikal~~plp~i~~~ptGG 156 (204)
T TIGR01182 99 DHGIPIIPGVA-------TPSEIMLALELGITALKLFPA--EV----SG-------G--VKMLKALAGPFPQVRFCPTGG 156 (204)
T ss_pred HcCCcEECCCC-------CHHHHHHHHHCCCCEEEECCc--hh----cC-------C--HHHHHHHhccCCCCcEEecCC
Confidence 45789999992 367899999999999999994 11 01 0 356889999999877763 1
Q ss_pred e---cccCCCCCCcceee
Q 014017 219 V---ALDPYSSDGHDGIV 233 (432)
Q Consensus 219 V---cLc~YTshGHcGIl 233 (432)
| .+-+|-..|..++.
T Consensus 157 V~~~N~~~~l~aGa~~vg 174 (204)
T TIGR01182 157 INLANVRDYLAAPNVACG 174 (204)
T ss_pred CCHHHHHHHHhCCCEEEE
Confidence 1 23445555555544
No 327
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=40.67 E-value=2.2e+02 Score=28.87 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=65.6
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc-----CcCcCCCCCHH---HH
Q 014017 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG-----DEAYNDNGLVP---RT 202 (432)
Q Consensus 131 ~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~g-----s~A~n~~g~v~---ra 202 (432)
.||+|.... + ++ ++.+.++.+.+.|+..|.+++.+.....|... ...+.-....+ +.
T Consensus 166 iPV~vKl~p---------~-----~~-~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~ 230 (334)
T PRK07565 166 IPVAVKLSP---------Y-----FS-NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRW 230 (334)
T ss_pred CcEEEEeCC---------C-----ch-hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHH
Confidence 699998642 1 12 36777788889999999999875432222111 01111112223 44
Q ss_pred HHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc------hHH
Q 014017 203 IWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG------RVG 274 (432)
Q Consensus 203 Ir~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS--DMMDG------rV~ 274 (432)
++.+++.. ++-|| - .|-|.|= +.|+.+-.+|||.|.=. =|.+| -+.
T Consensus 231 v~~~~~~~-~ipIi-----------------g-~GGI~s~-------~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~ 284 (334)
T PRK07565 231 IAILSGRV-GADLA-----------------A-TTGVHDA-------EDVIKMLLAGADVVMIASALLRHGPDYIGTILR 284 (334)
T ss_pred HHHHHhhc-CCCEE-----------------E-ECCCCCH-------HHHHHHHHcCCCceeeehHHhhhCcHHHHHHHH
Confidence 45555443 33333 1 2444442 34455556899987543 34444 345
Q ss_pred HHHHHHHHCCCccc
Q 014017 275 AIRAALDAEGFQHV 288 (432)
Q Consensus 275 aIR~aLD~~Gf~~v 288 (432)
.|++.|++.||.++
T Consensus 285 ~L~~~l~~~g~~~i 298 (334)
T PRK07565 285 GLEDWMERHGYESL 298 (334)
T ss_pred HHHHHHHHcCCCCH
Confidence 67788888998654
No 328
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=40.64 E-value=23 Score=36.31 Aligned_cols=72 Identities=21% Similarity=0.358 Sum_probs=44.2
Q ss_pred CcccCCCCCceee-chhhhHHHHHH-HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 014017 141 DTPIGAMPGCYRL-GWRHGLVQEVA-KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (432)
Q Consensus 141 ~~~I~sMPGv~r~-si~~~l~~~v~-~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitD 218 (432)
+...-.|||=--| -=|.+-++.+. --.++||+++=.+ +++. ..-.+-.++|++.-||++|+|
T Consensus 98 ~~~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E~-------------eqp~~i~~Ll~~~~PDIlViT- 161 (287)
T PF05582_consen 98 KEEYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIH--VPEK-------------EQPEKIYRLLEEYRPDILVIT- 161 (287)
T ss_pred cccccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEE--echH-------------HhhHHHHHHHHHcCCCEEEEe-
Confidence 4455678885433 22333333333 3457899987654 3321 122355677777779999996
Q ss_pred ecccCCCCCCcceeecCCC
Q 014017 219 VALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 219 VcLc~YTshGHcGIl~~~g 237 (432)
||||++.+.+
T Consensus 162 ---------GHD~~~K~~~ 171 (287)
T PF05582_consen 162 ---------GHDGYLKNKK 171 (287)
T ss_pred ---------CchhhhcCCC
Confidence 9999997544
No 329
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=40.47 E-value=3.7e+02 Score=26.42 Aligned_cols=50 Identities=12% Similarity=0.174 Sum_probs=37.3
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHH-HcCCCee
Q 014017 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQA-RAGADVV 263 (432)
Q Consensus 202 aIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A-~AGADiV 263 (432)
.++.|++.+|+ ++-++|..--|| |.=.-++=.+.+.+.+-.+. +.|||+|
T Consensus 13 v~~~l~~~~p~~~~iy~~D~~~~PY------------G~ks~~~i~~~~~~~~~~L~~~~g~d~i 65 (251)
T TIGR00067 13 VLKEIRKQLPKEHYIYVGDTKRFPY------------GEKSPEFILEYVLELLTFLKERHNIKLL 65 (251)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHHhCCCCEE
Confidence 46788888994 888999999999 33344555666667777777 8888874
No 330
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=39.88 E-value=17 Score=38.51 Aligned_cols=74 Identities=26% Similarity=0.312 Sum_probs=41.9
Q ss_pred CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccH-HHHHHH--HHHHHHHHHcCCC
Q 014017 185 KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMND-ETVHQL--CKQAVSQARAGAD 261 (432)
Q Consensus 185 Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND-~Tl~~L--ak~Avs~A~AGAD 261 (432)
-|.+|.....+-=-.-+|+..||++|||+.|=.-.+ |.|-+= -+|.+..| .||.-| -+||--.++|||+
T Consensus 210 FDttgaaGd~Df~atL~AvE~Lr~~fP~m~IE~GMA-------gE~vLG-MHG~leYdg~~LAGL~PHqQa~l~~kAGan 281 (466)
T PF09505_consen 210 FDTTGAAGDGDFYATLKAVEALRKKFPNMYIEMGMA-------GEFVLG-MHGELEYDGVTLAGLWPHQQAPLAEKAGAN 281 (466)
T ss_pred ccccccCCChhHHHHHHHHHHHHHhCcceeEecccc-------cceeee-cccceeECCEeeeccCcccccchHHhcCcc
Confidence 455555443222223589999999999999854433 111111 11222211 233322 2577778999999
Q ss_pred eecCC
Q 014017 262 VVSPS 266 (432)
Q Consensus 262 iVAPS 266 (432)
+..|-
T Consensus 282 vFGPV 286 (466)
T PF09505_consen 282 VFGPV 286 (466)
T ss_pred eecce
Confidence 99883
No 331
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=39.84 E-value=73 Score=34.72 Aligned_cols=62 Identities=29% Similarity=0.440 Sum_probs=43.6
Q ss_pred HHHHHHHhchhcCCcEEEEcCCCch----hHHHHHHHhhCC--CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHH
Q 014017 334 EALVEAQADESEGADILLVKPGLPY----LDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCL 407 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVKPal~Y----LDII~~vk~~~~--lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~i 407 (432)
+++..+..=++.|+|.|.|=-+--+ ++.|+.+|+.++ ++|.|=+| .+ .|....+
T Consensus 242 ~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV---------------~t-----~e~a~~l 301 (502)
T PRK07107 242 DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNV---------------VD-----REGFRYL 301 (502)
T ss_pred hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccc---------------cC-----HHHHHHH
Confidence 4555555556789999998766667 999999999985 67777555 22 2333344
Q ss_pred HHcCccEe
Q 014017 408 RRAGADII 415 (432)
Q Consensus 408 kRAGAd~I 415 (432)
..||||.|
T Consensus 302 i~aGAd~I 309 (502)
T PRK07107 302 AEAGADFV 309 (502)
T ss_pred HHcCCCEE
Confidence 57899997
No 332
>PRK05481 lipoyl synthase; Provisional
Probab=39.79 E-value=62 Score=32.40 Aligned_cols=55 Identities=18% Similarity=0.176 Sum_probs=39.5
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeE
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLV 214 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~ 214 (432)
.++.+ +++++++++.+.|++-|.|-|..-++..| .| ..-+.+.++.||+.+|++.
T Consensus 79 s~~~e-eI~~ea~~l~~~G~kEI~L~gg~~~d~~~-~~------~~~l~~Ll~~I~~~~p~ir 133 (289)
T PRK05481 79 PLDPD-EPERVAEAVARMGLKYVVITSVDRDDLPD-GG------AQHFAETIRAIRELNPGTT 133 (289)
T ss_pred CCCHH-HHHHHHHHHHHCCCCEEEEEEeeCCCccc-cc------HHHHHHHHHHHHhhCCCcE
Confidence 36775 69999999999999999998852111111 00 0146789999999999875
No 333
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=39.58 E-value=1.1e+02 Score=31.07 Aligned_cols=83 Identities=25% Similarity=0.327 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-----HHHHHHHHHCCCeEEEeeecccCCCCCCccee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-----RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~-----raIr~iK~~fPdl~IitDVcLc~YTshGHcGI 232 (432)
+|++...++.+.|..+++|=|- -+++|-|+ ..++.+|++. .|.|.+ |-|+
T Consensus 43 ~l~k~~~el~kkGy~g~llSGG-------------m~srg~VPl~kf~d~lK~lke~~-~l~ina-----------HvGf 97 (275)
T COG1856 43 SLLKRCMELEKKGYEGCLLSGG-------------MDSRGKVPLWKFKDELKALKERT-GLLINA-----------HVGF 97 (275)
T ss_pred HHHHHHHHHHhcCceeEEEeCC-------------cCCCCCccHHHHHHHHHHHHHhh-CeEEEE-----------Eeee
Confidence 5889999999999999999774 23445553 6888888874 344442 7788
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHH
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD 281 (432)
++| + .+--++++|+|+|+-.=. |-=.+||+.+.
T Consensus 98 vdE-------~-------~~eklk~~~vdvvsLDfv--gDn~vIk~vy~ 130 (275)
T COG1856 98 VDE-------S-------DLEKLKEELVDVVSLDFV--GDNDVIKRVYK 130 (275)
T ss_pred ccH-------H-------HHHHHHHhcCcEEEEeec--CChHHHHHHHc
Confidence 853 1 123467899999975433 33455676663
No 334
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=39.50 E-value=3.1e+02 Score=25.35 Aligned_cols=118 Identities=19% Similarity=0.140 Sum_probs=63.8
Q ss_pred cCCCCCCchHHHHHHHHHHCCC--ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHh
Q 014017 264 SPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQA 341 (432)
Q Consensus 264 APSDMMDGrV~aIR~aLD~~Gf--~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~ 341 (432)
.+.++-++-+..+.+.|.+.|. ..+.+.||....... +|+. .|.+ +..|-.. ..+....+.++
T Consensus 109 ~~~~~~~~~~~~v~~~l~~~~~~~~~v~~~Sf~~~~l~~----~~~~---~p~~--~~~~l~~--~~~~~~~~~~~---- 173 (229)
T cd08562 109 PDPGDEALTARVVAAALRELWPHASKLLLSSFSLEALRA----ARRA---APEL--PLGLLFD--TLPADWLELLA---- 173 (229)
T ss_pred CCCCccHHHHHHHHHHHHHhcCCcCCEEEECCCHHHHHH----HHHh---CCCC--cEEEEec--CCCcCHHHHHH----
Confidence 4444433445566777777776 567788875543322 3332 2332 1122211 01222222222
Q ss_pred chhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 342 DESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 342 Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+-|++.+-+.-....-+.|..+++ .+++|.+|-|-.+ |.+.-+.+.|.|.|||=|
T Consensus 174 --~~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~wTvn~~--------------------~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 174 --ALGAVSIHLNYRGLTEEQVKALKD-AGYKLLVYTVNDP--------------------ARAAELLEWGVDAIFTDR 228 (229)
T ss_pred --HcCCeEEecChhhCCHHHHHHHHH-CCCEEEEEeCCCH--------------------HHHHHHHHCCCCEEEcCC
Confidence 135665544333334567888777 4899999988322 334556677999999954
No 335
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=39.45 E-value=25 Score=35.98 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=41.8
Q ss_pred CCCCceee-chhhhHHHHHH-HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014017 146 AMPGCYRL-GWRHGLVQEVA-KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 146 sMPGv~r~-si~~~l~~~v~-~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.|||=--| .=|.+-++.+- .-.++||+.+=.+ +++ . ..-.+-.++|++.-||++|+|
T Consensus 102 ~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~--~~E-~------------eqp~~i~~Ll~~~~PDIlViT------ 160 (283)
T TIGR02855 102 GMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIH--CKE-K------------EMPEKVLDLIEEVRPDILVIT------ 160 (283)
T ss_pred CCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEE--ecc-h------------hchHHHHHHHHHhCCCEEEEe------
Confidence 68885333 22323333333 3457899876553 232 1 223456778888889999996
Q ss_pred CCCCCcceeecCCCc
Q 014017 224 YSSDGHDGIVREDGV 238 (432)
Q Consensus 224 YTshGHcGIl~~~g~ 238 (432)
||||++.+.+.
T Consensus 161 ----GHD~~~K~~~d 171 (283)
T TIGR02855 161 ----GHDAYSKNKGN 171 (283)
T ss_pred ----CchhhhcCCCC
Confidence 99999975443
No 336
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=39.12 E-value=1e+02 Score=29.24 Aligned_cols=61 Identities=18% Similarity=0.285 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCC------------CCCHHHHHHHHHHHCCCe-EEEeee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYND------------NGLVPRTIWLLKDRYPDL-VIYTDV 219 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~------------~g~v~raIr~iK~~fPdl-~IitDV 219 (432)
.+.+.++++.++|.+.|++.+. |+-...+........ |..+.+.+..+++++|++ +++.|+
T Consensus 132 ~~~~~i~~l~~~g~~~i~v~~~-p~~~~~P~~~~~~~~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~ 205 (270)
T cd01846 132 NLFQALQRLYAAGARNFLVLNL-PDLGLTPAFQAQGDAVAARATALTAAYNAKLAEKLAELKAQHPGVNILLFDT 205 (270)
T ss_pred HHHHHHHHHHHCCCCEEEEeCC-CCCCCCcccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEh
Confidence 5788889999999999988874 554444443332222 234556677777888874 344443
No 337
>PLN02428 lipoic acid synthase
Probab=39.10 E-value=75 Score=33.27 Aligned_cols=194 Identities=21% Similarity=0.256 Sum_probs=111.6
Q ss_pred ccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeeccc
Q 014017 143 PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222 (432)
Q Consensus 143 ~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc 222 (432)
.++...|-++...+ +..+.++.+.+.|++.|+|-+.--+++.| ..-.-+.+.|+.||+..|++.|-+ |.
T Consensus 120 av~~~~~p~~~d~~-Ep~~vA~~v~~~Glk~vvltSg~rddl~D-------~ga~~~~elir~Ir~~~P~i~Ie~---L~ 188 (349)
T PLN02428 120 AVKTSRTPPPPDPD-EPENVAEAIASWGVDYVVLTSVDRDDLPD-------GGSGHFAETVRRLKQLKPEILVEA---LV 188 (349)
T ss_pred cCCCCCCCCCCChh-hHHHHHHHHHHcCCCEEEEEEcCCCCCCc-------ccHHHHHHHHHHHHHhCCCcEEEE---eC
Confidence 33444444566554 57888888999999999887752222222 111245789999999999764432 22
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccc
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfY 302 (432)
| +. +-+++.|+. .++||.|++.=. ++ .+..++..+...++ +|.- ..
T Consensus 189 p------------df-~~d~elL~~-------L~eAG~d~i~hn--lE-Tv~rL~~~Ir~~~~------sye~-----~L 234 (349)
T PLN02428 189 P------------DF-RGDLGAVET-------VATSGLDVFAHN--IE-TVERLQRIVRDPRA------GYKQ-----SL 234 (349)
T ss_pred c------------cc-cCCHHHHHH-------HHHcCCCEEccC--cc-CcHHHHHHhcCCCC------CHHH-----HH
Confidence 2 11 112445544 457999997743 55 35566666542221 1111 12
Q ss_pred hhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechh
Q 014017 303 GPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE 381 (432)
Q Consensus 303 GPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGE 381 (432)
.-++.|..-.|.+. -++|-|= =+ +=..|=+.+...|+. -|.|++-+ ..|| --.+..+||.-|--=-|
T Consensus 235 e~L~~ak~~~pGi~-tkSg~Mv--GL-GET~Edv~e~l~~Lrelgvd~vti---gqyL-----~Ps~~h~~v~~~v~p~~ 302 (349)
T PLN02428 235 DVLKHAKESKPGLL-TKTSIML--GL-GETDEEVVQTMEDLRAAGVDVVTF---GQYL-----RPTKRHLPVKEYVTPEK 302 (349)
T ss_pred HHHHHHHHhCCCCe-EEEeEEE--ec-CCCHHHHHHHHHHHHHcCCCEEee---cccc-----CCCcceeeeecccCHHH
Confidence 22333333334333 2344441 22 444566777888866 68899855 3465 12345699999988899
Q ss_pred hHHHHHHH-HCCC
Q 014017 382 YSMIKAGG-ALKM 393 (432)
Q Consensus 382 YaMikaAa-~~G~ 393 (432)
|.+.+.-+ +.|.
T Consensus 303 f~~~~~~~~~~gf 315 (349)
T PLN02428 303 FEFWREYGEEMGF 315 (349)
T ss_pred HHHHHHHHHHcCC
Confidence 99988744 3443
No 338
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=38.89 E-value=4.2e+02 Score=26.62 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-cCcCcCCCCCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPT-GDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~-gs~A~n~~g~v~raIr~iK~~fPd-l~IitDVcLc~YTshGHcGIl~~ 235 (432)
.+.+.+..+.++||+.|+...=-++ ++.. .+.+-..-......|+.||+.+++ ..|- |+. | ..||.-
T Consensus 75 ~l~~~L~~~~~~Gi~niLal~GD~p--~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~ig--va~--~-Pe~Hp~---- 143 (281)
T TIGR00677 75 MIDDALERAYSNGIQNILALRGDPP--HIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIG--VAG--Y-PEGHPE---- 143 (281)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCC--CCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEE--EEE--C-CCCCCC----
Confidence 4777888899999999987653222 2111 111111112245667777776653 3221 111 1 223322
Q ss_pred CCccccHHH-HHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCC
Q 014017 236 DGVIMNDET-VHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (432)
Q Consensus 236 ~g~IdND~T-l~~Lak~Avs~A~AGADiVAPSDMMDGrV-~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap 313 (432)
..|.+. ++.|.+ -.+||||.+-.-=-.|-.. ....+.+.+.|. +++|+.=-.-..| |.-++..
T Consensus 144 ---~~~~~~d~~~L~~----Ki~aGA~f~iTQ~~Fd~~~~~~f~~~~~~~gi-~~PIi~GI~pi~s--~~~~~~~----- 208 (281)
T TIGR00677 144 ---AESVELDLKYLKE----KVDAGADFIITQLFYDVDNFLKFVNDCRAIGI-DCPIVPGIMPINN--YASFLRR----- 208 (281)
T ss_pred ---CCCHHHHHHHHHH----HHHcCCCEeeccceecHHHHHHHHHHHHHcCC-CCCEEeeccccCC--HHHHHHH-----
Confidence 223332 555543 2349999999888888766 677788888886 5666321110000 0000000
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHhchh----cCCcEEEEcCCCchhHHHHHHHhh
Q 014017 314 RFGDKKTYVIRVIELYANYREALVEAQADES----EGADILLVKPGLPYLDVIRLLRDK 368 (432)
Q Consensus 314 ~~gDRktYQmd~~~~p~N~~EAlre~~~Di~----EGAD~lMVKPal~YLDII~~vk~~ 368 (432)
-.+.-+.+|....+.|+++.-|-+ +|.++ -+++++++++.
T Consensus 209 -------~~~~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~--------a~~~~~~l~~~ 252 (281)
T TIGR00677 209 -------AKWSKTKIPQEIMSRLEPIKDDDEAVRDYGIEL--------IVEMCQKLLAS 252 (281)
T ss_pred -------HhcCCCCCCHHHHHHHHhccCCHHHHHHHHHHH--------HHHHHHHHHHC
Confidence 123345567777777776644422 45543 47888888875
No 339
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=38.83 E-value=1.2e+02 Score=27.06 Aligned_cols=137 Identities=14% Similarity=0.088 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH-CCCeEEEeeecccCCCCCCcceee---cCC-
Q 014017 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR-YPDLVIYTDVALDPYSSDGHDGIV---RED- 236 (432)
Q Consensus 162 ~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~-fPdl~IitDVcLc~YTshGHcGIl---~~~- 236 (432)
.++.+.+.|++-|.+-.. ++ ..+....-..|.......+.+.+++. +-++.++.+.--..++...=.|+. .+.
T Consensus 71 ~~~~l~~~~ip~v~~~~~-~~-~~~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~ 148 (264)
T cd01537 71 IVKLARKAGIPVVLVDRD-IP-DGDRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAG 148 (264)
T ss_pred HHHHhhhcCCCEEEeccC-CC-CCcccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcC
Confidence 466677777776655332 21 11222333334445555666666654 346666644221112110001110 000
Q ss_pred -----CccccHHHHHHHHHHHHHHHHcC--CC-eecCCCCCCchHHHHHHHHHHCCC---ccceeecchhhhccccch
Q 014017 237 -----GVIMNDETVHQLCKQAVSQARAG--AD-VVSPSDMMDGRVGAIRAALDAEGF---QHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 237 -----g~IdND~Tl~~Lak~Avs~A~AG--AD-iVAPSDMMDGrV~aIR~aLD~~Gf---~~v~ImSYSaKyASsfYG 303 (432)
..+.++.+.+...+.....-++| +| +++++|.+.- .+-+++.+.|. .++.|+++-..-.+.+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~---~~~~~~~~~g~~i~~~i~i~~~d~~~~~~~~~ 223 (264)
T cd01537 149 PIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAIFAANDDMAL---GALRALREAGLRVPDDISVIGFDGTPEALLAG 223 (264)
T ss_pred CcChhhhccCCCCHHHHHHHHHHHHhcCCCCCEEEEcCcHHHH---HHHHHHHHhCCCCCCCeEEEeecCccHHHhhC
Confidence 11111222223333334444556 66 6777776432 23456788898 589999997654443333
No 340
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.78 E-value=1.5e+02 Score=29.04 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=55.6
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCH---HHHHHHHHHHC-CCeEEEeeecccCCCCC
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLV---PRTIWLLKDRY-PDLVIYTDVALDPYSSD 227 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v---~raIr~iK~~f-Pdl~IitDVcLc~YTsh 227 (432)
+.|+..++.+.++++.++|..+|-||..=|. .|...-+- .+.++...+++ ..+..+ +.-+||.
T Consensus 6 h~s~~g~~~~a~~~~~~~G~~~~qif~~~P~---------~w~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~Hapy~-- 72 (274)
T TIGR00587 6 HVSAAGGLQAAYNRAAEIGATAFMFFLKSPR---------WWRRPMLEEEVIDWFKAALETNKNLSQIV--LVHAPYL-- 72 (274)
T ss_pred EEeccCCHHHHHHHHHHhCCCEEEEEecCcc---------ccCCCCCCHHHHHHHHHHHHHcCCCCcce--eccCCee--
Confidence 3455456889999999999999999987332 24333332 23443332232 221111 2356664
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
..+...+..+ -+.|++.+.+..-.-++-||+.|
T Consensus 73 --iNlas~~~~~-r~~sv~~~~~~i~~A~~lga~~v 105 (274)
T TIGR00587 73 --INLASPDEEK-EEKSLDVLDEELKRCELLGIMLY 105 (274)
T ss_pred --eecCCCCHHH-HHHHHHHHHHHHHHHHHcCCCEE
Confidence 1222222222 35888888888777788899844
No 341
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=38.67 E-value=59 Score=32.09 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=14.3
Q ss_pred HHHHHHcCCCeecCCCCCCch
Q 014017 252 AVSQARAGADVVSPSDMMDGR 272 (432)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGr 272 (432)
++.-.+|||++|--|-.-=|+
T Consensus 201 ~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 201 TLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred HHHHHHcCCCEEEEecccCCC
Confidence 445568999988766555554
No 342
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=38.60 E-value=1.7e+02 Score=29.97 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=66.3
Q ss_pred cccccccCCCCCHHHHHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE--------EechhhHHHHHHHH
Q 014017 320 TYVIRVIELYANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAAY--------QVSGEYSMIKAGGA 390 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY--------qVSGEYaMikaAa~ 390 (432)
|||-. + ++|++.+.+=++ -|||+|=..=+--.+|+|+.+.+ -.+||.+- +.-|-|..
T Consensus 87 sy~~s----~---~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~-~gIPV~gHiGLtPQ~v~~~GGykv------ 152 (268)
T COG0413 87 SYEVS----P---EQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTE-RGIPVMGHIGLTPQSVNWLGGYKV------ 152 (268)
T ss_pred ccCCC----H---HHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHH-cCCceEEEecCChhhhhccCCeee------
Confidence 68876 5 899999999898 56999999999888999999987 46888762 33343432
Q ss_pred CCCc-hhhHHHHHHHHHHHHcCccEeehhcHH-HHHHHH
Q 014017 391 LKMI-DEQRVMMESLMCLRRAGADIILTYFAL-QAARCL 427 (432)
Q Consensus 391 ~G~i-d~~~~~~EsL~~ikRAGAd~IiTYfA~-~~a~wL 427 (432)
+|=- +..+-++|--+++-.|||-.|+-=.-+ ++|+.+
T Consensus 153 qGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp~~lA~~I 191 (268)
T COG0413 153 QGRTEESAEKLLEDAKALEEAGAFALVLECVPAELAKEI 191 (268)
T ss_pred ecCCHHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHHH
Confidence 1211 233566777789999999988654433 355443
No 343
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=38.39 E-value=1.6e+02 Score=28.07 Aligned_cols=103 Identities=9% Similarity=0.137 Sum_probs=51.6
Q ss_pred CCCchHHHHHHHHHHCCCc--------------cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHH
Q 014017 268 MMDGRVGAIRAALDAEGFQ--------------HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYR 333 (432)
Q Consensus 268 MMDGrV~aIR~aLD~~Gf~--------------~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~ 333 (432)
+-+..-..|+++.++.||. .++++-- .+.+.||..+.+.+...-. +..|++-+.....+..
T Consensus 25 vs~~tr~rV~~~a~~lgY~pn~~a~~l~~~~~~~Igvi~~--~~~~~~~~~~~~gi~~~~~---~~g~~~~~~~~~~~~~ 99 (327)
T PRK10423 25 VSEAITAKVEAAIKELNYAPSALARSLKLNQTRTIGMLIT--ASTNPFYSELVRGVERSCF---ERGYSLVLCNTEGDEQ 99 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCccHHHHHHhhCCCCeEEEEeC--CCCCCcHHHHHHHHHHHHH---HcCCEEEEEeCCCCHH
Confidence 3344555555555555551 2333321 1446788888877755433 4468764322222333
Q ss_pred HHHHHHHhc-hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE
Q 014017 334 EALVEAQAD-ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 334 EAlre~~~D-i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY 376 (432)
+- .+.... ++.++|-|++=|...-......++...++|+...
T Consensus 100 ~~-~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i 142 (327)
T PRK10423 100 RM-NRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMM 142 (327)
T ss_pred HH-HHHHHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEE
Confidence 21 222222 4578999999776422222222332236777654
No 344
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.38 E-value=1.8e+02 Score=28.81 Aligned_cols=109 Identities=18% Similarity=0.285 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH-----HH-------------HHHHHHHCCCeEEEeee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP-----RT-------------IWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~-----ra-------------Ir~iK~~fPdl~IitDV 219 (432)
...+.++.+.+.|+.-+-| |+ | ..|+.+ ||++. || ++.||+..+++-++
T Consensus 25 ~~~~~~~~l~~~Gad~iEl-Gi-P--fsDP~a------DGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv--- 91 (256)
T TIGR00262 25 TSLEIIKTLIEAGADALEL-GV-P--FSDPLA------DGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG--- 91 (256)
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-C--CCCCCC------cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---
Confidence 4678888999999998887 63 5 345533 57764 33 55565543443222
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchh
Q 014017 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 220 cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa 295 (432)
+-.| .+ -|. .--++ +-.-..+++|+|.|.--|.-.-....+++.+.++|+.-+.+++-++
T Consensus 92 -~m~Y--------~N---pi~-~~G~e---~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 92 -LLTY--------YN---LIF-RKGVE---EFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred -EEEe--------cc---HHh-hhhHH---HHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 1122 10 000 00112 2233457888887655566666777888888888876666666544
No 345
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=38.37 E-value=2.2e+02 Score=27.51 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=66.7
Q ss_pred HHHHHHHH------HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCcc-----------ceeecchh-hhccccchh
Q 014017 243 ETVHQLCK------QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH-----------VSIMSYTA-KYASSFYGP 304 (432)
Q Consensus 243 ~Tl~~Lak------~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~-----------v~ImSYSa-KyASsfYGP 304 (432)
.|++-+|+ ..||.+-.|-.-|+| -.-..|+++.++.||.- ..++.... .+.+.||..
T Consensus 6 ~ti~dIA~~agVS~~TVSrvLn~~~~vs~-----~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~ 80 (331)
T PRK14987 6 PVLQDVADRVGVTKMTVSRFLRNPEQVSV-----ALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAE 80 (331)
T ss_pred CcHHHHHHHhCCCHHHhhhhhCCCCCCCH-----HHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHH
Confidence 35565555 346666666544443 46677778888888731 11222222 245567777
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHH-hchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQ-ADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~-~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY 376 (432)
+.+.+...- .+..|++-+...-.+.. ...+.. .=++.++|-|++=|....-+.+..+++ .++|+...
T Consensus 81 ~~~gi~~~~---~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~ 148 (331)
T PRK14987 81 VLRGIESVT---DAHGYQTMLAHYGYKPE-MEQERLESMLSWNIDGLILTERTHTPRTLKMIEV-AGIPVVEL 148 (331)
T ss_pred HHHHHHHHH---HHCCCEEEEecCCCCHH-HHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHh-CCCCEEEE
Confidence 776665542 24457764111111222 112222 224689999998775444566666644 56777653
No 346
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=38.37 E-value=2.2e+02 Score=30.99 Aligned_cols=100 Identities=21% Similarity=0.257 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHH-HHhhCCCCeEE---EEechhhHHHHHHHHCCCchh-hHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRL-LRDKYPLPIAA---YQVSGEYSMIKAGGALKMIDE-QRVMMES 403 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~-vk~~~~lPvaa---YqVSGEYaMikaAa~~G~id~-~~~~~Es 403 (432)
..|..+=++.+..=++-|||.||==--.--||=||+ +-+++++||+. ||+-.|+.. | ..+..|. .+-+++.
T Consensus 73 ~~d~~~E~~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~-k---~~~~~~mt~d~~~~~ 148 (431)
T PRK13352 73 ISDIEEELEKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAAR-K---YGSVVDMTEDDLFDV 148 (431)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHh-c---CCChhhCCHHHHHHH
Confidence 446677788999889999999997666667887764 55778899986 666555411 0 0122222 3577888
Q ss_pred HHHHHHcCccEeehh--cHHHHHHHHhccCC
Q 014017 404 LMCLRRAGADIILTY--FALQAARCLCGEKR 432 (432)
Q Consensus 404 L~~ikRAGAd~IiTY--fA~~~a~wL~~~~~ 432 (432)
+..=-+-|.|++--. ..++.+++|++++|
T Consensus 149 ie~qa~~GVDfmTiHcGi~~~~~~~~~~~~R 179 (431)
T PRK13352 149 IEKQAKDGVDFMTIHCGVTRETLERLKKSGR 179 (431)
T ss_pred HHHHHHhCCCEEEEccchhHHHHHHHHhcCC
Confidence 888889999997433 35777777776544
No 347
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=38.26 E-value=1.6e+02 Score=25.94 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+++.... .+..|++++- |.+.-+++++.++....+|+....-.........+.+.|..|
T Consensus 30 ~~~~~~~l~~~~---~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~ 96 (223)
T PRK11517 30 VSDGRDGLYLAL---KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGAND 96 (223)
T ss_pred ECCHHHHHHHHh---cCCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHhcCCCE
Confidence 346777776553 3568999985 566678899999887789998876666666677777888654
No 348
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=38.22 E-value=28 Score=33.15 Aligned_cols=66 Identities=27% Similarity=0.349 Sum_probs=48.2
Q ss_pred HHHHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcC
Q 014017 333 REALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 411 (432)
Q Consensus 333 ~EAlre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAG 411 (432)
..|+.....-++ -..|+|=+=|| ....+|++++++++.|+.| -|+++.++-+.|. .+||
T Consensus 103 S~al~~~~~~i~~~~PD~vEilPg-~~p~vi~~i~~~~~~PiIA---------------GGLI~~~e~v~~a----l~aG 162 (175)
T PF04309_consen 103 SSALETGIKQIEQSKPDAVEILPG-VMPKVIKKIREETNIPIIA---------------GGLIRTKEDVEEA----LKAG 162 (175)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESC-CHHHHHCCCCCCCSS-EEE---------------ESS--SHHHHHHH----CCTT
T ss_pred HHHHHHHHHHHhhcCCCEEEEchH-HHHHHHHHHHHhcCCCEEe---------------ecccCCHHHHHHH----HHcC
Confidence 555555555453 68999999999 6668999999999999976 6999998777765 5789
Q ss_pred ccEeehh
Q 014017 412 ADIILTY 418 (432)
Q Consensus 412 Ad~IiTY 418 (432)
|+.|=|.
T Consensus 163 a~aVSTS 169 (175)
T PF04309_consen 163 ADAVSTS 169 (175)
T ss_dssp CEEEEE-
T ss_pred CEEEEcC
Confidence 9998764
No 349
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=38.00 E-value=1e+02 Score=33.35 Aligned_cols=102 Identities=24% Similarity=0.373 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhh-------hhhCCCC-
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE-------ALDSNPR- 314 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd-------Aa~Sap~- 314 (432)
-+.+..++++..++..|.|.|= |.++|. |-=|.||+| +++-+-+
T Consensus 168 l~~e~~a~~~yE~~~GGvD~iK----------------DDEnl~------------s~~f~~~e~R~~~~m~~i~~aeae 219 (429)
T COG1850 168 LSPEEYAELAYELLSGGVDFIK----------------DDENLT------------SPPFNRFEERVAKIMEAIDKAEAE 219 (429)
T ss_pred CCHHHHHHHHHHHHhcCcceec----------------chhhcc------------CcccccHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999973 455553 333455554 2222222
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh--CCCCeEE
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK--YPLPIAA 375 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~--~~lPvaa 375 (432)
-|.||.|-.++ -+-.+|.+|.+++=.+.|++.+||-=-..=++.++-+++. .++|+=|
T Consensus 220 TGekk~y~~NI---Ta~~~EM~rrae~a~elG~~~~midi~~~G~~a~q~lre~~d~gl~iha 279 (429)
T COG1850 220 TGEKKMYAVNI---TAPCEEMMRRAELAAELGANYVMIDIVVTGFTALQYLREDEDIGLAIHA 279 (429)
T ss_pred hCceEEEEeec---cCCHHHHHHHHHHHHHcCCCEEEEEEEecccHHHHHHHhcccCCceEEe
Confidence 38999999993 3337999999999999999999997543337778888876 6787744
No 350
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=37.71 E-value=4.5e+02 Score=26.64 Aligned_cols=118 Identities=16% Similarity=0.079 Sum_probs=68.2
Q ss_pred ccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeeccc
Q 014017 143 PIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222 (432)
Q Consensus 143 ~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc 222 (432)
+|..|...-+ +-. .+.+.+..+.++||+.|+...=-| -++.... .-.-...++.||+. .+..|. |+..
T Consensus 85 ~i~Hltcr~~-n~~-~l~~~L~~~~~~GI~niLaLrGD~--p~~~~~~-----~~~a~dLv~li~~~-~~~~i~--va~y 152 (296)
T PRK09432 85 AAPHLTCIDA-TPD-ELRTIAKDYWNNGIRHIVALRGDL--PPGSGKP-----EMYASDLVTLLKSV-ADFDIS--VAAY 152 (296)
T ss_pred eeeecccCCC-CHH-HHHHHHHHHHHCCCCEEEEeCCCC--CCCCCCC-----CcCHHHHHHHHHHh-CCCccc--eeeC
Confidence 3444444433 433 588888999999999999876422 2322111 11124677777764 443332 2333
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHHHHCCC
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAALDAEGF 285 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG-rV~aIR~aLD~~Gf 285 (432)
| .||...- +-+..++.|-+ -.+||||.+-.-=-.|. .+....+.+.+.|.
T Consensus 153 P---eghp~~~------~~~~dl~~Lk~----K~~aGA~~~iTQ~~Fd~~~~~~f~~~~~~~Gi 203 (296)
T PRK09432 153 P---EVHPEAK------SAQADLINLKR----KVDAGANRAITQFFFDVESYLRFRDRCVSAGI 203 (296)
T ss_pred C---CCCCCCC------CHHHHHHHHHH----HHHcCCCeeecccccchHHHHHHHHHHHHcCC
Confidence 3 5554432 12344444332 35799998887777774 45677888888885
No 351
>PRK15108 biotin synthase; Provisional
Probab=37.67 E-value=1.8e+02 Score=29.85 Aligned_cols=96 Identities=15% Similarity=0.186 Sum_probs=54.7
Q ss_pred ceeecchhhhcc--ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEE-EE----cCCC----
Q 014017 288 VSIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADIL-LV----KPGL---- 356 (432)
Q Consensus 288 v~ImSYSaKyAS--sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l-MV----KPal---- 356 (432)
++|+..-+.+++ +.|-.|+.- +.+ +..+.|.|+ | +|.+..+..-.+.|+.=+ +| -|..
T Consensus 43 ~~i~~~~Tn~C~~~C~yC~~~~~--~~~--~~~~~~~ls----~---eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e 111 (345)
T PRK15108 43 STLLSIKTGACPEDCKYCPQSSR--YKT--GLEAERLME----V---EQVLESARKAKAAGSTRFCMGAAWKNPHERDMP 111 (345)
T ss_pred EEeEEEECCCcCCCCcCCCCccc--CCC--CCCcccCCC----H---HHHHHHHHHHHHcCCCEEEEEecCCCCCcchHH
Confidence 666665344444 566656431 111 222356687 5 777777776666777644 44 5532
Q ss_pred chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 357 PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 357 ~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
-|+|+++.+|+ ..+++.+. +|.++ -|.+..+|.||+|.
T Consensus 112 ~i~~~i~~ik~-~~i~v~~s--------------~G~ls-----~e~l~~LkeAGld~ 149 (345)
T PRK15108 112 YLEQMVQGVKA-MGLETCMT--------------LGTLS-----ESQAQRLANAGLDY 149 (345)
T ss_pred HHHHHHHHHHh-CCCEEEEe--------------CCcCC-----HHHHHHHHHcCCCE
Confidence 25799999995 45554422 34333 35566677777774
No 352
>PRK13753 dihydropteroate synthase; Provisional
Probab=37.59 E-value=1.1e+02 Score=31.08 Aligned_cols=85 Identities=13% Similarity=0.043 Sum_probs=52.7
Q ss_pred HHHHHHHHHhchhcCCcEEEE-----cCCCch----------hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCC--c
Q 014017 332 YREALVEAQADESEGADILLV-----KPGLPY----------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM--I 394 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~lMV-----KPal~Y----------LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~--i 394 (432)
...|+..+..-+++|||||=| .|+-.. +.+|+.+++. ..||..= +-....+++|.++|. |
T Consensus 24 ~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISID--T~~~~va~~al~aGadiI 100 (279)
T PRK13753 24 PAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MHRVSID--SFQPETQRYALKRGVGYL 100 (279)
T ss_pred HHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CCcEEEE--CCCHHHHHHHHHcCCCEE
Confidence 389999999999999999977 354332 3577777765 4665432 334567777777762 1
Q ss_pred hh-hHH-HHHHHHHHHHcCccEeehhc
Q 014017 395 DE-QRV-MMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 395 d~-~~~-~~EsL~~ikRAGAd~IiTYf 419 (432)
+. ... --+.+.-+...|+-+||.+.
T Consensus 101 NDVsg~~d~~~~~vva~~~~~vVlmH~ 127 (279)
T PRK13753 101 NDIQGFPDPALYPDIAEADCRLVVMHS 127 (279)
T ss_pred EeCCCCCchHHHHHHHHcCCCEEEEec
Confidence 11 100 11222335567888888664
No 353
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=37.39 E-value=53 Score=30.68 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCC
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLP 372 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lP 372 (432)
..+.+||++-+. .+ .+-. ..|||+.+. +++|+.+|+.+.+|
T Consensus 12 ~~~~~~~~~~~~-~~-~~~~-~~vk~g~~l~~~~G~~~v~~ir~~~~i~ 57 (215)
T PRK13813 12 VTDRERALKIAE-EL-DDYV-DAIKVGWPLVLASGLGIIEELKRYAPVI 57 (215)
T ss_pred CCCHHHHHHHHH-hc-cccC-CEEEEcHHHHHhhCHHHHHHHHhcCCEE
Confidence 667788776442 22 2222 479999865 68899999876444
No 354
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=37.11 E-value=43 Score=32.72 Aligned_cols=51 Identities=24% Similarity=0.297 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCC-CCC-----Cc--hHHHHHHHHHHCCCccceeecch
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPS-DMM-----DG--rV~aIR~aLD~~Gf~~v~ImSYS 294 (432)
.|+=--..||+.-|+|||+.|||= +.| || .|..|++.++..|+ ++-||.=|
T Consensus 108 ~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~dg~~~i~~~~~~~~~~~~-~tkILaAS 166 (220)
T PRK12655 108 GTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEMHAP-ESMVLAAS 166 (220)
T ss_pred EeEecCHHHHHHHHHcCCeEEEeecchHhHcCCCHHHHHHHHHHHHHhcCC-CcEEEEEe
Confidence 444445678999999999999993 111 21 24556666666555 45665543
No 355
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=37.08 E-value=76 Score=33.19 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=85.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEee-----CCCCcccCCCCC-----ceeechh--hhH
Q 014017 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHE-----GEEDTPIGAMPG-----CYRLGWR--HGL 159 (432)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~e-----g~~~~~I~sMPG-----v~r~si~--~~l 159 (432)
+|.-.|-|=+|.- - +-.++|+..-+.-+..+=.|+..=+.= |+-.+-..|=|. -|++... .+.
T Consensus 153 AGADiVAPSdMMD----G-rV~aIR~aLD~~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eA 227 (320)
T cd04824 153 AGAHIVAPSDMMD----G-RVRAIKQALIQAGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLA 227 (320)
T ss_pred hCCCEEecccccc----c-HHHHHHHHHHHCCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHH
Confidence 3444555555531 1 235778877776664444454442211 110112222221 2333321 247
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec---CC
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR---ED 236 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~---~~ 236 (432)
+.|++.-++-|-.-+|+=|- .+.-.-||.+|++||++=|. -|.-.|-=..+. +.
T Consensus 228 lre~~~D~~EGAD~lMVKPa-----------------l~YLDIi~~~k~~~~~~Pva------aYqVSGEYaMikaAa~~ 284 (320)
T cd04824 228 LRAVERDVSEGADMIMVKPG-----------------TPYLDIVREAKDKHPDLPLA------VYHVSGEYAMLHAAAEA 284 (320)
T ss_pred HHHHHhhHHhCCCEEEEcCC-----------------chHHHHHHHHHHhccCCCEE------EEEccHHHHHHHHHHHc
Confidence 88888889999998888332 34567899999999976655 577777666554 47
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
|.+|-+.. +.+.-+++.+||||+|-
T Consensus 285 G~iDe~~~---~~Esl~~ikRAGAd~Ii 309 (320)
T cd04824 285 GAFDLKRA---VLEAMTGFRRAGADIII 309 (320)
T ss_pred CCCcHHHH---HHHHHHHHHhcCCCEEE
Confidence 88885432 34566789999999974
No 356
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=37.05 E-value=27 Score=36.26 Aligned_cols=63 Identities=27% Similarity=0.165 Sum_probs=39.2
Q ss_pred hchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 341 ADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 341 ~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.|+-|-.-.+||+=|.+=--+-++--++-+-|+=.- .=.++..++|.+.++.|.|||||+|.|
T Consensus 10 ~~~~~~~~~vlvlDGG~~t~Ler~g~~~~~~PlWs~--------------~~~~s~Pe~V~~~H~efL~aGadIi~T 72 (317)
T KOG1579|consen 10 KDILENTGRVLVLDGGFGTQLERRGYDKVDSPLWSA--------------EALASNPEAVEQVHKEFLRAGADIIST 72 (317)
T ss_pred HHHHhccCcEEEEeChHHHHHHhhcccccCCCCCCc--------------hhhccChHHHHHHHHHHHHccCcEEEE
Confidence 333344447888888766555554444333233110 112344689999999999999999975
No 357
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=37.05 E-value=59 Score=33.69 Aligned_cols=84 Identities=21% Similarity=0.276 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCC--ccceeec-------------chhhh----c-cccchh----
Q 014017 249 CKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF--QHVSIMS-------------YTAKY----A-SSFYGP---- 304 (432)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf--~~v~ImS-------------YSaKy----A-SsfYGP---- 304 (432)
..++....++|.++|...|+ ..++...++.||++-- .+++|.+ |.... . =.|+||
T Consensus 74 ~~~~~~~L~aG~NVV~s~~~-h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ 152 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSFDN-HRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQ 152 (324)
T ss_pred HHHHHHHHHcCCCEEECCCc-ccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhccCCCCcceeccCCCcCc
Confidence 35666778999999999884 7777777888887643 3688877 22111 1 157877
Q ss_pred -hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHH
Q 014017 305 -FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQ 340 (432)
Q Consensus 305 -FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~ 340 (432)
+.+|+..-+.-.|-..|.+ | ..+||..+.
T Consensus 153 ghs~a~~~~~Gv~~a~~~ti-----p--~~dal~~v~ 182 (324)
T TIGR01921 153 GHSDAVRRIDGVKKAVQYTL-----P--SEDALEKAR 182 (324)
T ss_pred hhhhhhcccCCcccceEEEE-----e--hHHHHHHHH
Confidence 6677776666566678887 5 578888876
No 358
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=36.99 E-value=1.7e+02 Score=33.12 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=62.4
Q ss_pred HHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSS 226 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YTs 226 (432)
..+-++.+.+.|...|-|.+- +.+.-+|+.|..--|---++...++.||+.+| |+.|..=+....|..
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 344455678899999988432 23456788887655666677899999999995 676765555544421
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
+| .+-++++ +.|-.+.++|+|.|.-|.
T Consensus 633 ---------~g-~~~~~~~----~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 633 ---------GG-NTPDDAV----EIARAFKAAGADLIDVSS 659 (765)
T ss_pred ---------CC-CCHHHHH----HHHHHHHhcCCcEEEeCC
Confidence 12 2334444 344445788999998774
No 359
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=36.85 E-value=2.2e+02 Score=26.77 Aligned_cols=75 Identities=23% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchh-------HHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYL-------DVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YL-------DII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
|+|.+|+.. ..+..+..++- .+.|||-|.|==--.++ ++|+++++.+++|+..
T Consensus 18 G~~~~~~~~----~~dp~~~a~~~---~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~------------- 77 (230)
T TIGR00007 18 GDYDKETVY----GDDPVEAAKKW---EEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV------------- 77 (230)
T ss_pred cccCcceEe----cCCHHHHHHHH---HHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE-------------
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|-+.. +|.+..+..+|||.|+
T Consensus 78 --ggGI~~----~ed~~~~~~~Ga~~vv 99 (230)
T TIGR00007 78 --GGGIRS----LEDVEKLLDLGVDRVI 99 (230)
T ss_pred --eCCcCC----HHHHHHHHHcCCCEEE
No 360
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=36.68 E-value=1.2e+02 Score=31.60 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=36.1
Q ss_pred HHHHHHHHHhchhcC--CcEEEEcCCCch----hHHHHHHHhhCCCC-eEEEEe
Q 014017 332 YREALVEAQADESEG--ADILLVKPGLPY----LDVIRLLRDKYPLP-IAAYQV 378 (432)
Q Consensus 332 ~~EAlre~~~Di~EG--AD~lMVKPal~Y----LDII~~vk~~~~lP-vaaYqV 378 (432)
..|.+..+..-++.| +|.|.+=++.-+ +|.|+.+|+.++.| +.+=+|
T Consensus 92 t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV 145 (321)
T TIGR01306 92 KACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV 145 (321)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC
Confidence 345566666668888 899999997554 89999999999877 666555
No 361
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.66 E-value=79 Score=31.16 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc-----------CcC-----CCCCHHHHHHHHHHHCCCeEE-Eee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE-----------AYN-----DNGLVPRTIWLLKDRYPDLVI-YTD 218 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~-----------A~n-----~~g~v~raIr~iK~~fPdl~I-itD 218 (432)
.+.+.|+++.++|.+.|++++. |+--..+.... ..| -|..+.+.++.+++++|++.| +.|
T Consensus 165 ~i~~~v~~L~~~GAr~~~v~~l-pplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D 241 (315)
T cd01837 165 NISSAIKRLYDLGARKFVVPGL-GPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYAD 241 (315)
T ss_pred HHHHHHHHHHhCCCcEEEecCC-CCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 5777899999999999999985 55333322111 111 133556778888888888543 444
No 362
>PRK06256 biotin synthase; Validated
Probab=36.62 E-value=2.3e+02 Score=28.34 Aligned_cols=66 Identities=26% Similarity=0.383 Sum_probs=41.8
Q ss_pred HHHHHHHHHhchhcCCc-EEEE----cCCC----chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHH
Q 014017 332 YREALVEAQADESEGAD-ILLV----KPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 402 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD-~lMV----KPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~E 402 (432)
.+|.+.++..=.+.|+. +.+| .|.. -++++++.+++.+++.+.+ | .|.+++ |
T Consensus 93 ~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~---~-----------~g~l~~-----e 153 (336)
T PRK06256 93 IEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICA---C-----------LGLLTE-----E 153 (336)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEe---c-----------CCcCCH-----H
Confidence 36666666655667875 5554 2443 4689999999876665533 2 355553 4
Q ss_pred HHHHHHHcCccEee
Q 014017 403 SLMCLRRAGADIIL 416 (432)
Q Consensus 403 sL~~ikRAGAd~Ii 416 (432)
.+..+++||++.|.
T Consensus 154 ~l~~LkeaG~~~v~ 167 (336)
T PRK06256 154 QAERLKEAGVDRYN 167 (336)
T ss_pred HHHHHHHhCCCEEe
Confidence 55668888888664
No 363
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=36.56 E-value=1.1e+02 Score=30.61 Aligned_cols=102 Identities=11% Similarity=0.057 Sum_probs=53.4
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCH---HHHHHHHHHHCCCeEEEeeecccC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLV---PRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g~v---~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
|++.-+.. -..+-++.+++.|++.|.+|.-+++. .+...+ .+.+..+ .++++..|+.... ..+++
T Consensus 67 ~~v~~~~r--~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~---~t~~e~l~~~~~~v~~a~~~g~~----v~~~~-- 135 (279)
T cd07947 67 PEVTGWIR--ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLK---MTREEAMEKYLEIVEEALDHGIK----PRCHL-- 135 (279)
T ss_pred CEEEEEec--CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC---cCHHHHHHHHHHHHHHHHHCCCe----EEEEE--
Confidence 56666532 35788899999999999998654432 222222 1222223 2344444444322 22333
Q ss_pred CCCCCcceeecCCCcccc-HHHHHHHHHHHHHHHHcCCC-eecCCCCCC
Q 014017 224 YSSDGHDGIVREDGVIMN-DETVHQLCKQAVSQARAGAD-VVSPSDMMD 270 (432)
Q Consensus 224 YTshGHcGIl~~~g~IdN-D~Tl~~Lak~Avs~A~AGAD-iVAPSDMMD 270 (432)
.|..+ -|- +..++.+.+.+-.-.++||| .|.-.|+.=
T Consensus 136 ------ed~~r----~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 136 ------EDITR----ADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred ------EcccC----CCcccchHHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 11121 122 33333444433334579999 688777764
No 364
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=36.28 E-value=41 Score=36.01 Aligned_cols=29 Identities=21% Similarity=0.483 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014017 199 VPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (432)
Q Consensus 199 v~raIr~iK~~fPdl~IitDVcLc~YTsh 227 (432)
+.++|+.+|+..||++|+.|=|--||+..
T Consensus 177 I~~~i~~vk~~~p~~iifVDNCYGEFvE~ 205 (403)
T PF06838_consen 177 IKEIIKFVKEINPDVIIFVDNCYGEFVET 205 (403)
T ss_dssp HHHHHHHHHHH-TTSEEEEE-TTTTTTSS
T ss_pred HHHHHHHHHhhCCCeEEEEeCCcceeccc
Confidence 35899999999999999999999999843
No 365
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=36.03 E-value=31 Score=36.39 Aligned_cols=50 Identities=24% Similarity=0.280 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCccceeecc
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiV--APSDMMD-GrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
-|-++|+ +|-..+++||||+| |=-||=+ --++.|++.|++.|. ++++++=
T Consensus 28 ~Dv~atv----~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~-~iPlVAD 80 (359)
T PF04551_consen 28 RDVEATV----AQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGS-PIPLVAD 80 (359)
T ss_dssp T-HHHHH----HHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT--SS-EEEE
T ss_pred ccHHHHH----HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCC-CCCeeee
Confidence 3555665 56677899999997 2223333 558899999999996 7999863
No 366
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=36.02 E-value=91 Score=28.73 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=24.3
Q ss_pred chhcCCcEEEEcCCCchhHHHHHHHhh---CCCCeEEEEec
Q 014017 342 DESEGADILLVKPGLPYLDVIRLLRDK---YPLPIAAYQVS 379 (432)
Q Consensus 342 Di~EGAD~lMVKPal~YLDII~~vk~~---~~lPvaaYqVS 379 (432)
.+.+..|.|++--....+.+++.+++. .++||..|.-+
T Consensus 180 ~~~~~~dai~~~~d~~a~~~~~~~~~~~~~~~ipvig~d~~ 220 (281)
T cd06325 180 SLAGKVDAIYVPTDNTVASAMEAVVKVANEAKIPVIASDDD 220 (281)
T ss_pred HhcccCCEEEEcCchhHHhHHHHHHHHHHHcCCCEEEcCHH
Confidence 333445788775555555667766654 37898888754
No 367
>PLN02489 homocysteine S-methyltransferase
Probab=35.99 E-value=30 Score=35.46 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.0
Q ss_pred chhhHHHHHHHHHHHHcCccEeeh
Q 014017 394 IDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++..+.|.+.+..+.+||||+|.|
T Consensus 51 l~~Pe~V~~vH~~yl~AGAdvI~T 74 (335)
T PLN02489 51 ITSPHLIRKVHLDYLEAGADIIIT 74 (335)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEe
Confidence 566789999999999999998865
No 368
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.95 E-value=3.7e+02 Score=25.20 Aligned_cols=97 Identities=25% Similarity=0.311 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
....++++++++|...|-+...+. ..|+. ...-+.+=|..+++...++.+.. |+ +.+
T Consensus 70 ~k~~eve~A~~~GAdevdvv~~~g-~~~~~-------~~~~~~~ei~~v~~~~~g~~lkv--------------I~-e~~ 126 (203)
T cd00959 70 VKVAEAREAIADGADEIDMVINIG-ALKSG-------DYEAVYEEIAAVVEACGGAPLKV--------------IL-ETG 126 (203)
T ss_pred HHHHHHHHHHHcCCCEEEEeecHH-HHhCC-------CHHHHHHHHHHHHHhcCCCeEEE--------------EE-ecC
Confidence 578899999999999998844322 11211 11334455666666654432221 11 223
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD------GrV~aIR~aLD 281 (432)
.. +|+.+...+++ -.++|||+|-.|-=-- +.|..+++.+.
T Consensus 127 ~l-~~~~i~~a~ri---a~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 127 LL-TDEEIIKACEI---AIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CC-CHHHHHHHHHH---HHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC
Confidence 33 35555555555 4688999999882222 45566666664
No 369
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.61 E-value=1e+02 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.398 Sum_probs=25.2
Q ss_pred hcCCcEEEEcC--------CCchhHHHHHHHhhCCCCeEE
Q 014017 344 SEGADILLVKP--------GLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 344 ~EGAD~lMVKP--------al~YLDII~~vk~~~~lPvaa 375 (432)
+-|+|.|.|-+ +.+.+|.++++|+..++||.+
T Consensus 158 ~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 197 (319)
T TIGR00737 158 DAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIG 197 (319)
T ss_pred HhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEE
Confidence 45899998732 234699999999999999975
No 370
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=35.60 E-value=55 Score=32.99 Aligned_cols=52 Identities=19% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 360 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 360 DII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
++++++++ .+++|.+|-|..|+.-+- +|...-..|-+..+.+.|.|.|||-|
T Consensus 257 ~~v~~a~~-~gl~v~~wTvn~~~~~~~-------~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 257 DLVEDAHA-AGLQVHPYTFRNENTFLP-------PDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred HHHHHHHH-cCCEEEEEEecCCCcccC-------cccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 77777666 589999999987643221 12211223344455558999999965
No 371
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.54 E-value=86 Score=32.24 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=47.7
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCc
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTshGH 229 (432)
++++.+ .+++.++.+.+.|...|.| +|..|. ..|+ -+.+-++.+|+.+ |++-| .-|+|
T Consensus 139 ~~~~~e-~l~~~a~~~~~~Ga~~i~i--------~DT~G~--~~P~-~v~~~v~~l~~~l~~~i~i---------g~H~H 197 (337)
T PRK08195 139 HMAPPE-KLAEQAKLMESYGAQCVYV--------VDSAGA--LLPE-DVRDRVRALRAALKPDTQV---------GFHGH 197 (337)
T ss_pred cCCCHH-HHHHHHHHHHhCCCCEEEe--------CCCCCC--CCHH-HHHHHHHHHHHhcCCCCeE---------EEEeC
Confidence 456664 5888888888888887655 222332 2222 2456788888887 56543 34777
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 230 cGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
+-.= +. ..-++.-.+||||+|=-|
T Consensus 198 nnlG-----------la--~ANslaAi~aGa~~iD~S 221 (337)
T PRK08195 198 NNLG-----------LG--VANSLAAVEAGATRIDGS 221 (337)
T ss_pred CCcc-----------hH--HHHHHHHHHhCCCEEEec
Confidence 6432 11 122444567999966433
No 372
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=35.53 E-value=1e+02 Score=33.35 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=56.5
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHH-HHhhCCCCeEEEEechhhHHHHHHHHCC--Cchh-hHHHHHHHHH
Q 014017 331 NYREALVEAQADESEGADILLVKPGLPYLDVIRL-LRDKYPLPIAAYQVSGEYSMIKAGGALK--MIDE-QRVMMESLMC 406 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~-vk~~~~lPvaaYqVSGEYaMikaAa~~G--~id~-~~~~~EsL~~ 406 (432)
|.++=++.+..=++-|||.||==--.-=||-||+ +-+++++||+.--+ |... .+.+ ..|. .+.++|.+.-
T Consensus 74 d~~~E~~K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPi---Yqa~---~~~~~~~~~~t~d~~~~~ie~ 147 (420)
T PF01964_consen 74 DIEEELEKLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPI---YQAA---IRKGGSIVDMTEDDFFDVIEK 147 (420)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HH---HHHH---HHTTT-GGG--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchH---HHHH---HHhCCChhhCCHHHHHHHHHH
Confidence 5566688888889999999998776667888875 45788999997433 3322 2222 2332 2578899988
Q ss_pred HHHcCccEeehhc--HHHHHHHHhccCC
Q 014017 407 LRRAGADIILTYF--ALQAARCLCGEKR 432 (432)
Q Consensus 407 ikRAGAd~IiTYf--A~~~a~wL~~~~~ 432 (432)
=-+.|.|++--+. +++.+++|+.++|
T Consensus 148 qa~~GVDfmtiH~git~~~~~~~~~~~R 175 (420)
T PF01964_consen 148 QAKDGVDFMTIHCGITRETLERLKKSGR 175 (420)
T ss_dssp HHHHT--EEEE-TT--GGGGGGGT--TS
T ss_pred HHHcCCCEEEEccchhHHHHHHHhhhcc
Confidence 8899999976554 4566666655443
No 373
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=35.45 E-value=2.4e+02 Score=30.63 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=69.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHH-HHhhCCCCeEE---EEechhhHHHHHHHHCCCchh-hHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRL-LRDKYPLPIAA---YQVSGEYSMIKAGGALKMIDE-QRVMMES 403 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~-vk~~~~lPvaa---YqVSGEYaMikaAa~~G~id~-~~~~~Es 403 (432)
..|.++=++.+..=++-|||.||==--.--||-||+ +-+.+++||+. ||+-.|+. ....|. .+-+++.
T Consensus 73 ~~d~~~E~~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~-------~~~~~mt~d~~~~~ 145 (423)
T TIGR00190 73 TSDIEEEVEKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVH-------GAVEDMDEDDMFRA 145 (423)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhc-------CChhhCCHHHHHHH
Confidence 445666689999999999999997776677888875 45778999885 77755543 123332 2567888
Q ss_pred HHHHHHcCccEeehh--cHHHHHHHHhccCC
Q 014017 404 LMCLRRAGADIILTY--FALQAARCLCGEKR 432 (432)
Q Consensus 404 L~~ikRAGAd~IiTY--fA~~~a~wL~~~~~ 432 (432)
+..=-+-|.|++--. ..++.++.|++++|
T Consensus 146 ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R 176 (423)
T TIGR00190 146 IEKQAKDGVDFMTIHAGVLLEYVERLKRSGR 176 (423)
T ss_pred HHHHHHhCCCEEEEccchhHHHHHHHHhCCC
Confidence 888888899986433 35777777766544
No 374
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=35.43 E-value=4.8e+02 Score=27.26 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=90.5
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC------------CCCCCchHHHHHHHHHHCCC-ccceeec--
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP------------SDMMDGRVGAIRAALDAEGF-QHVSIMS-- 292 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAP------------SDMMDGrV~aIR~aLD~~Gf-~~v~ImS-- 292 (432)
|+-.++-....|+ +-+++.+.|-...++||+++=. -+|-.--...++++.++.|+ .=+.+|.
T Consensus 92 ~~~~~IAGPCsiE---s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~ 168 (335)
T PRK08673 92 GKPVVIAGPCSVE---SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPR 168 (335)
T ss_pred CceEEEEecCccC---CHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHH
Confidence 3444444334554 5677888999999999997622 34444456778888888887 2233332
Q ss_pred ---chhhhcccc--------chhhhhhhhCCCCC-CCcccccccccCCCCCHHHHHHHHHhchhcCC-cEEEEcCCC---
Q 014017 293 ---YTAKYASSF--------YGPFREALDSNPRF-GDKKTYVIRVIELYANYREALVEAQADESEGA-DILLVKPGL--- 356 (432)
Q Consensus 293 ---YSaKyASsf--------YGPFRdAa~Sap~~-gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA-D~lMVKPal--- 356 (432)
|.++|+..+ --|++++++++.+- .=+ +=+. ++..|-+..++.=..+|- ++++..=+.
T Consensus 169 ~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk-~G~~------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf 241 (335)
T PRK08673 169 DVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLK-RGMS------ATIEEWLMAAEYILAEGNPNVILCERGIRTF 241 (335)
T ss_pred HHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEe-CCCC------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCC
Confidence 334443322 23566666655331 112 2222 245665555444345787 566665322
Q ss_pred -ch------hHHHHHHHhhCCCCeEEE--Eechh----hHHHHHHHHCCC
Q 014017 357 -PY------LDVIRLLRDKYPLPIAAY--QVSGE----YSMIKAGGALKM 393 (432)
Q Consensus 357 -~Y------LDII~~vk~~~~lPvaaY--qVSGE----YaMikaAa~~G~ 393 (432)
+| |-.|..+|+.+.+||..| |-.|. ..|.+||...|.
T Consensus 242 ~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GA 291 (335)
T PRK08673 242 ETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGA 291 (335)
T ss_pred CCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCC
Confidence 23 556778899999999777 44454 366666666664
No 375
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=35.31 E-value=33 Score=34.89 Aligned_cols=72 Identities=26% Similarity=0.290 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHCCCeEEEeeec-ccCCC----------CCCcceeecCCCccccHHHHHHHHH------------
Q 014017 194 NDNGLVPRTIWLLKDRYPDLVIYTDVA-LDPYS----------SDGHDGIVREDGVIMNDETVHQLCK------------ 250 (432)
Q Consensus 194 n~~g~v~raIr~iK~~fPdl~IitDVc-Lc~YT----------shGHcGIl~~~g~IdND~Tl~~Lak------------ 250 (432)
|.|.++..--+.|--..+|.=|++=|| .|||. ..|-.||.+=.-.-..|-+..+--+
T Consensus 63 naN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVem 142 (268)
T PF09370_consen 63 NANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEM 142 (268)
T ss_dssp EHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHH
T ss_pred CHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHH
Q ss_pred -------------------HHHHHHHcCCCeecC
Q 014017 251 -------------------QAVSQARAGADVVSP 265 (432)
Q Consensus 251 -------------------~Avs~A~AGADiVAP 265 (432)
||...++||||||.+
T Consensus 143 i~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~ 176 (268)
T PF09370_consen 143 IRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVA 176 (268)
T ss_dssp HHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEE
T ss_pred HHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEe
No 376
>PRK06256 biotin synthase; Validated
Probab=35.26 E-value=1.6e+02 Score=29.52 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=35.2
Q ss_pred ee-echhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE
Q 014017 151 YR-LGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI 215 (432)
Q Consensus 151 ~r-~si~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~I 215 (432)
|+ ++.+ +++++++.+.+.|++.+.+..- -.+..+ +-.-+.+.++.||+. +++.+
T Consensus 88 ~~~~s~e-eI~~~~~~~~~~g~~~~~l~~~g~~p~~~---------~~~~~~e~i~~i~~~-~~i~~ 143 (336)
T PRK06256 88 YAWLDIE-ELIEAAKEAIEEGAGTFCIVASGRGPSGK---------EVDQVVEAVKAIKEE-TDLEI 143 (336)
T ss_pred ecCCCHH-HHHHHHHHHHHCCCCEEEEEecCCCCCch---------HHHHHHHHHHHHHhc-CCCcE
Confidence 54 5885 6999999999999988877531 111000 001366789999887 66543
No 377
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.25 E-value=1.2e+02 Score=31.19 Aligned_cols=106 Identities=27% Similarity=0.259 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
.+.++.+.+.|+..|-+|-... + ...+.+.|+.+|+.--++.+. ++ .+|.
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~-----e--------~~~~~~~i~~ak~~G~~v~~~----l~--~a~~----------- 140 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCT-----E--------ADVSEQHIGLARELGMDTVGF----LM--MSHM----------- 140 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecc-----h--------HHHHHHHHHHHHHCCCeEEEE----EE--eccC-----------
Confidence 4678999999999988764211 1 124688999999886443221 21 1221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH---CCC--ccceeecchhhhc
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA---EGF--QHVSIMSYTAKYA 298 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~---~Gf--~~v~ImSYSaKyA 298 (432)
.|.+.|.+++-...++|||.|.-.|+.= -+|.++|+.|+. -|| +|..=|+++.-.+
T Consensus 141 ---~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANsla 209 (337)
T PRK08195 141 ---APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLA 209 (337)
T ss_pred ---CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHH
Confidence 1456667777777789999999888653 568888888831 243 4555566654443
No 378
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.19 E-value=1.2e+02 Score=29.77 Aligned_cols=118 Identities=21% Similarity=0.305 Sum_probs=76.1
Q ss_pred HHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeec-chhhhccccchhhhh----hhhCCCCCC---Cccccccccc
Q 014017 255 QARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMS-YTAKYASSFYGPFRE----ALDSNPRFG---DKKTYVIRVI 326 (432)
Q Consensus 255 ~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImS-YSaKyASsfYGPFRd----Aa~Sap~~g---DRktYQmd~~ 326 (432)
.+..|+.++.|+ .|+.++|.+.|.++++|++ |..--.-.+..=|.+ .+... .|| |.+=.+++
T Consensus 97 ~~~~g~p~tt~~-------~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~-~~~~~~~~~ia~i~-- 166 (239)
T TIGR02990 97 AAKPGTPVVTPS-------SAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT-CLGLTDDREMARIS-- 166 (239)
T ss_pred hcCCCCCeeCHH-------HHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee-ccCCCCCceeeecC--
Confidence 355689999885 6999999999999999886 433222222222221 11111 133 33445677
Q ss_pred CCCCCHHHHHHHHHhchhcCCcEEEEc-CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHH
Q 014017 327 ELYANYREALVEAQADESEGADILLVK-PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKA 387 (432)
Q Consensus 327 ~~p~N~~EAlre~~~Di~EGAD~lMVK-Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMika 387 (432)
|....++++++. ..+||.|.+= =+|.-+|||.++.+.++.||..=+.--=+.|++.
T Consensus 167 --p~~i~~~~~~~~---~~~aDAifisCTnLrt~~vi~~lE~~lGkPVlsSNqat~W~~Lr~ 223 (239)
T TIGR02990 167 --PDCIVEAALAAF---DPDADALFLSCTALRAATCAQRIEQAIGKPVVTSNQATAWRCLRL 223 (239)
T ss_pred --HHHHHHHHHHhc---CCCCCEEEEeCCCchhHHHHHHHHHHHCCCEEEHHHHHHHHHHHH
Confidence 766667776662 4689977654 5667799999999999999966554444444444
No 379
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=35.10 E-value=1.8e+02 Score=28.49 Aligned_cols=96 Identities=21% Similarity=0.290 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--C--eEEEeeecccCCCCCCcceee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--D--LVIYTDVALDPYSSDGHDGIV 233 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP--d--l~IitDVcLc~YTshGHcGIl 233 (432)
....+++++++.|...|.+--.+.. .+ +.-+.+-++.+++..- + +.|+. |.. |.-
T Consensus 94 ~~~~~ve~A~~~Gad~v~~~~~~g~-~~----------~~~~~~~~~~v~~~~~~~g~pl~vi~------~~~----g~~ 152 (267)
T PRK07226 94 VLVGTVEEAIKLGADAVSVHVNVGS-ET----------EAEMLEDLGEVAEECEEWGMPLLAMM------YPR----GPG 152 (267)
T ss_pred eeeecHHHHHHcCCCEEEEEEecCC-hh----------HHHHHHHHHHHHHHHHHcCCcEEEEE------ecC----CCc
Confidence 3678899999999998877433221 11 1224445555554321 2 33332 322 221
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHH
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD 281 (432)
-+++ .+++.+...+++| +++|||+|-+| .-|.+..+|+...
T Consensus 153 ~e~~--~~~~~i~~a~~~a---~e~GAD~vKt~--~~~~~~~l~~~~~ 193 (267)
T PRK07226 153 IKNE--YDPEVVAHAARVA---AELGADIVKTN--YTGDPESFREVVE 193 (267)
T ss_pred cCCC--ccHHHHHHHHHHH---HHHCCCEEeeC--CCCCHHHHHHHHH
Confidence 1222 2334444444444 57999999776 3344555555543
No 380
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=35.09 E-value=2.2e+02 Score=25.74 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=53.9
Q ss_pred CccceeecchhhhccccchhhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC-CchhHHH
Q 014017 285 FQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG-LPYLDVI 362 (432)
Q Consensus 285 f~~v~ImSYSaKyASsfYGPFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa-l~YLDII 362 (432)
.+++.|+.....|...+..-|++++..... ......|..+ ..+....+.++.. .++|.|++=-. .....++
T Consensus 135 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~----~~~~~~~~~~l~~---~~~~~vi~~~~~~~~~~~~ 207 (298)
T cd06268 135 VKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPG----ATDFSPLIAKLKA---AGPDAVFLAGYGGDAALFL 207 (298)
T ss_pred CCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCC----CccHHHHHHHHHh---cCCCEEEEccccchHHHHH
Confidence 566777766555666666667766654321 0011122222 2345555655543 47888887544 5567788
Q ss_pred HHHHhh-CCCCeEEEEechhhHHH
Q 014017 363 RLLRDK-YPLPIAAYQVSGEYSMI 385 (432)
Q Consensus 363 ~~vk~~-~~lPvaaYqVSGEYaMi 385 (432)
+.+++. .++++.....+.+-..+
T Consensus 208 ~~~~~~g~~~~~~~~~~~~~~~~~ 231 (298)
T cd06268 208 KQAREAGLKVPIVGGDGAAAPALL 231 (298)
T ss_pred HHHHHcCCCCcEEecCccCCHHHH
Confidence 888763 36888777666554443
No 381
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=35.06 E-value=1.3e+02 Score=29.87 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=31.6
Q ss_pred hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 358 YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+|++.+|+..++||.+= .+ .|.. -+.|....+..+|||.|+
T Consensus 156 ~~~iv~~v~~~~~~Pv~vK-l~--------------~~~~-~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 156 VEEICRWVREAVKIPVIAK-LT--------------PNIT-DIREIARAAKEGGADGVS 198 (299)
T ss_pred HHHHHHHHHHhcCCCeEEE-CC--------------CCch-hHHHHHHHHHHcCCCEEE
Confidence 6889999999889998853 22 1222 246677778899999987
No 382
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=34.99 E-value=88 Score=31.12 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=36.7
Q ss_pred HHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHHh
Q 014017 360 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC 428 (432)
Q Consensus 360 DII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~ 428 (432)
+.++.+++ .+++|.+|.| |.. |.+..+.+.|+|.|||-+-..+.+||.
T Consensus 252 ~~v~~~~~-~G~~v~vWTV----------------Nd~----~~~~~l~~~GVdgIiTD~P~~l~~~l~ 299 (300)
T cd08612 252 SLFRHLQK-RGIQVYGWVL----------------NDE----EEFERAFELGADGVMTDYPTKLREFLD 299 (300)
T ss_pred HHHHHHHH-CCCEEEEeec----------------CCH----HHHHHHHhcCCCEEEeCCHHHHHHHHh
Confidence 56777665 4899999988 433 345566678999999999988888875
No 383
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=34.97 E-value=5.4e+02 Score=26.74 Aligned_cols=118 Identities=18% Similarity=0.351 Sum_probs=74.1
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCC---CCc------ccCcCcCCCCCHHH
Q 014017 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL---KSP------TGDEAYNDNGLVPR 201 (432)
Q Consensus 131 ~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~---Kd~------~gs~A~n~~g~v~r 201 (432)
.|+||.=.+ .++ ++.+.++.+.+.|...++++=.+-+.. +.. .+.-.+.---+-++
T Consensus 162 ~Pv~vKl~P--------------~~~-di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~ 226 (310)
T COG0167 162 VPVFVKLAP--------------NIT-DIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI 226 (310)
T ss_pred CceEEEeCC--------------CHH-HHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH
Confidence 899998533 243 588999999999999999976433111 111 22233333344577
Q ss_pred HHHHHHHHC----CCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC-CCCC-Cc----
Q 014017 202 TIWLLKDRY----PDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP-SDMM-DG---- 271 (432)
Q Consensus 202 aIr~iK~~f----Pdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAP-SDMM-DG---- 271 (432)
|++.|++-+ +++-|| |--||. + ++-|+.+-.|||+.|-= |.+| +|
T Consensus 227 al~~v~~l~~~~~~~ipII-----------GvGGI~-------s-------~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~ 281 (310)
T COG0167 227 ALRVVAELYKRLGGDIPII-----------GVGGIE-------T-------GEDALEFILAGASAVQVGTALIYKGPGIV 281 (310)
T ss_pred HHHHHHHHHHhcCCCCcEE-----------EecCcC-------c-------HHHHHHHHHcCCchheeeeeeeeeCchHH
Confidence 877777543 356666 222333 2 45688899999998742 2233 32
Q ss_pred --hHHHHHHHHHHCCCccc
Q 014017 272 --RVGAIRAALDAEGFQHV 288 (432)
Q Consensus 272 --rV~aIR~aLD~~Gf~~v 288 (432)
-+..|.+.|+++||+.+
T Consensus 282 ~~I~~~l~~~l~~~g~~si 300 (310)
T COG0167 282 KEIIKGLARWLEEKGFESI 300 (310)
T ss_pred HHHHHHHHHHHHHcCCCCH
Confidence 35667888999999754
No 384
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.78 E-value=2.1e+02 Score=28.71 Aligned_cols=161 Identities=19% Similarity=0.199 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHcCCCeecCC------------CCCCchHHHHHHHHHHCCCc-cceee-----cchhhhcccc----
Q 014017 244 TVHQLCKQAVSQARAGADVVSPS------------DMMDGRVGAIRAALDAEGFQ-HVSIM-----SYTAKYASSF---- 301 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPS------------DMMDGrV~aIR~aLD~~Gf~-~v~Im-----SYSaKyASsf---- 301 (432)
+.+++.+.|-...++|+.++==+ .+..-....+|+.+.+.|.. =+.++ -|.+++.+.+
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~kIga 118 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYADMLQIGS 118 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhCCEEEECc
Confidence 45667778888888999987432 23345678899999998872 22222 2444443311
Q ss_pred ----chhhhhhhhCCCCC-CCcccccccccCCCCCHHHHHHHHHhchhcCC-cEEEEc------CCCc----hhHHHHHH
Q 014017 302 ----YGPFREALDSNPRF-GDKKTYVIRVIELYANYREALVEAQADESEGA-DILLVK------PGLP----YLDVIRLL 365 (432)
Q Consensus 302 ----YGPFRdAa~Sap~~-gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA-D~lMVK------Pal~----YLDII~~v 365 (432)
.-|+.+++++..+- +=++...+ +.+|.+..++.=..+|- ++++.. |.-+ .|-.|..+
T Consensus 119 ~~~~n~~LL~~~a~~gkPV~lk~G~~~-------s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~l 191 (266)
T PRK13398 119 RNMQNFELLKEVGKTKKPILLKRGMSA-------TLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVI 191 (266)
T ss_pred ccccCHHHHHHHhcCCCcEEEeCCCCC-------CHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHH
Confidence 13666666554331 12222222 44565555443234677 666665 3333 24567788
Q ss_pred HhhCCCCeEE--EEechh----hHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 366 RDKYPLPIAA--YQVSGE----YSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 366 k~~~~lPvaa--YqVSGE----YaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
|+.+++||.. =|..|. ..+..+|...|. | -+++|++...-||..|-
T Consensus 192 k~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga-~--Gl~iE~H~~pd~a~~D~ 243 (266)
T PRK13398 192 KELSHLPIIVDPSHATGRRELVIPMAKAAIAAGA-D--GLMIEVHPEPEKALSDA 243 (266)
T ss_pred HhccCCCEEEeCCCcccchhhHHHHHHHHHHcCC-C--EEEEeccCCccccCCch
Confidence 8889999765 244443 455666666662 2 24555555555555554
No 385
>PRK08185 hypothetical protein; Provisional
Probab=34.72 E-value=58 Score=33.03 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHhchhc-CCcEEEE-------------cCCCchhHHHHHHHhhCCCCeEEEEechh-hHHHHHHHHCCCc
Q 014017 330 ANYREALVEAQADESE-GADILLV-------------KPGLPYLDVIRLLRDKYPLPIAAYQVSGE-YSMIKAGGALKMI 394 (432)
Q Consensus 330 ~N~~EAlre~~~Di~E-GAD~lMV-------------KPal~YLDII~~vk~~~~lPvaaYqVSGE-YaMikaAa~~G~i 394 (432)
.+..||.+-+ ++ |+|.|-| ||.+. +|+|+++++..++|+..===||- -..++.|.+.|.-
T Consensus 149 t~peea~~f~----~~TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 149 TDPEQAEDFV----SRTGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred CCHHHHHHHH----HhhCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 3446664443 23 9999999 89987 99999999999999977666653 4568888999863
Q ss_pred ------hhhHHHHHHHHHHH
Q 014017 395 ------DEQRVMMESLMCLR 408 (432)
Q Consensus 395 ------d~~~~~~EsL~~ik 408 (432)
|.+....+.+....
T Consensus 224 KiNi~T~l~~a~~~~~~~~~ 243 (283)
T PRK08185 224 KINISSDMKYAFFKKVREIL 243 (283)
T ss_pred EEEeChHHHHHHHHHHHHHH
Confidence 33455555555443
No 386
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=34.52 E-value=2.1e+02 Score=29.15 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHhchh-cCCcEEEE----------cCC-Cc--------hhHHHHHHHhhC--CCCeEEEEechhhHHHH
Q 014017 329 YANYREALVEAQADES-EGADILLV----------KPG-LP--------YLDVIRLLRDKY--PLPIAAYQVSGEYSMIK 386 (432)
Q Consensus 329 p~N~~EAlre~~~Di~-EGAD~lMV----------KPa-l~--------YLDII~~vk~~~--~lPvaaYqVSGEYaMik 386 (432)
.+|.-|.+.++...++ -|+|.|=+ |-+ .. -.+|++.+++.+ ++||.+= ++
T Consensus 70 ~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvK-iR------- 141 (312)
T PRK10550 70 LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVK-VR------- 141 (312)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEE-EE-------
Confidence 5666666666655555 48877632 333 11 278899999987 4898753 22
Q ss_pred HHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 387 AGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 387 aAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.||-+.+. ..|....+..+|+|.|.-
T Consensus 142 ----~g~~~~~~-~~~~a~~l~~~Gvd~i~V 167 (312)
T PRK10550 142 ----LGWDSGER-KFEIADAVQQAGATELVV 167 (312)
T ss_pred ----CCCCCchH-HHHHHHHHHhcCCCEEEE
Confidence 26654444 578888899999998864
No 387
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=34.48 E-value=75 Score=31.55 Aligned_cols=49 Identities=35% Similarity=0.499 Sum_probs=0.0
Q ss_pred cccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 187 PTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 187 ~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
|.||-++ |.++.-+...++...+..+| + +|-|++ .+||...++||||+|
T Consensus 160 EaGSGa~---~~v~~~v~~~~~~~~~~~Li----------------v--GGGIrs-------~e~A~~~~~aGAD~I 208 (230)
T PF01884_consen 160 EAGSGAY---GPVPEEVIAAVKKLSDIPLI----------------V--GGGIRS-------PEQAREMAEAGADTI 208 (230)
T ss_dssp E--TTSS---S-HHHHHHHHHHHSSSSEEE----------------E--ESS--S-------HHHHHHHHCTTSSEE
T ss_pred EeCCCCC---CCccHHHHHHHHhcCCccEE----------------E--eCCcCC-------HHHHHHHHHCCCCEE
No 388
>PLN02361 alpha-amylase
Probab=34.34 E-value=1.6e+02 Score=31.33 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
..|.+.++.+.++|+++|-|-|+. + . .+.+.|++..+ +.+.|++++++ .|-||.|+.+-+
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~-~-~---~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~--gi~vi~D~V~NH 100 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPS-Q-S---LAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQY--NVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCC-c-C---CCCCCCCcccccccCcccCCHHHHHHHHHHHHHc--CCEEEEEEcccc
Confidence 479999999999999999997742 1 1 12244554432 34566666555 699999998754
No 389
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=34.26 E-value=2.3e+02 Score=28.74 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=63.2
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCc-c----cCcCcCCCCCHHHHHHH
Q 014017 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSP-T----GDEAYNDNGLVPRTIWL 205 (432)
Q Consensus 131 ~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~-~----gs~A~n~~g~v~raIr~ 205 (432)
.|++|.-.. . ++ ++.+.++.+.+.|+..|.+++.++...-|- . ....+.-....+.+++.
T Consensus 164 iPv~vKl~p---------~-----~~-~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~ 228 (325)
T cd04739 164 IPVAVKLSP---------F-----FS-ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRW 228 (325)
T ss_pred CCEEEEcCC---------C-----cc-CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHH
Confidence 599998532 1 12 477888889999999999988753211111 0 00112222333455555
Q ss_pred HHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc------hHHH
Q 014017 206 LKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG------RVGA 275 (432)
Q Consensus 206 iK~~fP--dl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS--DMMDG------rV~a 275 (432)
+++... ++-|| - .|-|.+ .+.|+.+-.+|||.|.=. =|.+| -...
T Consensus 229 v~~v~~~~~ipIi-----------------g-~GGI~s-------~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 229 IAILSGRVKASLA-----------------A-SGGVHD-------AEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred HHHHHcccCCCEE-----------------E-ECCCCC-------HHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHH
Confidence 544321 22222 1 233433 234555556899987432 33333 2345
Q ss_pred HHHHHHHCCCcc
Q 014017 276 IRAALDAEGFQH 287 (432)
Q Consensus 276 IR~aLD~~Gf~~ 287 (432)
|.+.|+++||.+
T Consensus 284 L~~~l~~~g~~~ 295 (325)
T cd04739 284 LEAWMEEHGYES 295 (325)
T ss_pred HHHHHHHcCCCC
Confidence 667788889865
No 390
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.26 E-value=33 Score=33.64 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHCCC-eEEEeeecccCCCCC----CcceeecCCCccccHHHHHH--------HHHHHHHHHHcCCCeecC
Q 014017 199 VPRTIWLLKDRYPD-LVIYTDVALDPYSSD----GHDGIVREDGVIMNDETVHQ--------LCKQAVSQARAGADVVSP 265 (432)
Q Consensus 199 v~raIr~iK~~fPd-l~IitDVcLc~YTsh----GHcGIl~~~g~IdND~Tl~~--------Lak~Avs~A~AGADiVAP 265 (432)
+.++++.+|+++.+ ..++. .+..|||.- |...++. .-..+.+.++. +.+.+-.+.++|+|+|.-
T Consensus 111 ~l~a~~~l~~~~~~~~~v~g-~~~gP~t~a~~l~g~~~~~~--~~~~~pe~~~~~l~~i~~~~~~~~~~~~~~G~d~i~i 187 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIG-AVGGPFTLASLLMGASKFLM--LLYTDPELVHKLLEKCTEFIIRYADALIEAGADGIYI 187 (330)
T ss_pred HHHHHHHHHHHhCCCeeeec-cCCCHHHHHHHHHhHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45899999999986 44443 567888854 3333221 12333333333 344555667779999988
Q ss_pred CCCC
Q 014017 266 SDMM 269 (432)
Q Consensus 266 SDMM 269 (432)
.|-.
T Consensus 188 ~d~~ 191 (330)
T cd03465 188 SDPW 191 (330)
T ss_pred eCCc
Confidence 8754
No 391
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.14 E-value=2.1e+02 Score=29.25 Aligned_cols=85 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred eechhh-----hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 152 RLGWRH-----GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 152 r~si~~-----~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
|.++++ .+++.++.+.+.|+..|.+.|... ..+.-.|.....-...--..|+.+|+.+|++-||
T Consensus 131 R~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~-~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi---------- 199 (318)
T TIGR00742 131 RIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKA-WLSGLSPKENREIPPLRYERVYQLKKDFPHLTIE---------- 199 (318)
T ss_pred ecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCch-hhcCCCccccccCCchhHHHHHHHHHhCCCCcEE----------
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
-+|.|.+-+..+.... |||.|
T Consensus 200 --------~NGdI~s~~da~~~l~--------g~dgV 220 (318)
T TIGR00742 200 --------INGGIKNSEQIKQHLS--------HVDGV 220 (318)
T ss_pred --------EECCcCCHHHHHHHHh--------CCCEE
No 392
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=34.13 E-value=54 Score=33.94 Aligned_cols=53 Identities=28% Similarity=0.500 Sum_probs=42.3
Q ss_pred EcCCCch---hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 352 VKPGLPY---LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 352 VKPal~Y---LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
|.|+-.| |++++.+|+.. .+|+ |-+...|+-..++-+.|.|.-++.+|.|++-
T Consensus 190 VRp~A~Y~~SL~~L~~~k~~~P~i~T------------KSgiMlGLGEt~~Ev~e~m~DLr~~gvdilT 246 (306)
T COG0320 190 VRPGATYERSLSLLERAKELGPDIPT------------KSGLMVGLGETDEEVIEVMDDLRSAGVDILT 246 (306)
T ss_pred cCCCCcHHHHHHHHHHHHHhCCCccc------------ccceeeecCCcHHHHHHHHHHHHHcCCCEEE
Confidence 5566667 99999999976 3654 5556678877788899999999999999863
No 393
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=34.12 E-value=62 Score=32.40 Aligned_cols=111 Identities=25% Similarity=0.355 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHH---------------HHHHHCCCccceeecchhhhccccchh
Q 014017 241 NDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIR---------------AALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGrV~aIR---------------~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
-|+.=+.|...|..+.++|||+++ |..-|-=-.-.|+ +++...|+++|+++.=-.--.+.||-
T Consensus 57 w~~~~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT~~Tm~~~fY~- 135 (230)
T COG1794 57 WDEAGEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGTRFTMEQGFYR- 135 (230)
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCceeEEeeccchHHhHHHH-
Confidence 356668899999999999999876 4444432222222 34555699999999865566788884
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCC-HHHHHHHHHhc-hhcCCcEEEEcC--CCchhHHHHHHHhh
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYAN-YREALVEAQAD-ESEGADILLVKP--GLPYLDVIRLLRDK 368 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N-~~EAlre~~~D-i~EGAD~lMVKP--al~YLDII~~vk~~ 368 (432)
+.+. .+.++. .+|.. -++.+....-| +.+| .+|. --.|++||++++++
T Consensus 136 --~~l~-------~~giev---vvPdd~~q~~v~~iIy~El~~G----~~~~~sr~~~~~ii~~l~~~ 187 (230)
T COG1794 136 --KRLE-------EKGIEV---VVPDDDEQAEVNRIIYEELCQG----IVKDASRELYLAVIERLAER 187 (230)
T ss_pred --HHHH-------HCCceE---ecCCHHHHHHHHHHHHHHHhcc----cchHHHHHHHHHHHHHHHHc
Confidence 4332 122332 12322 22444444444 4444 2333 23567777777665
No 394
>PRK08185 hypothetical protein; Provisional
Probab=34.07 E-value=1.2e+02 Score=30.84 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCCc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
.+.++++++.|.+|||+=+. + ++.+--+.++.+..+-.-+ ++.|=+.+ ||=|-. +++.
T Consensus 81 ~e~i~~ai~~Gf~SVM~D~S---~---------l~~eeNi~~t~~vv~~a~~~gv~vE~El--------G~vg~~-e~~~ 139 (283)
T PRK08185 81 IEDVMRAIRCGFTSVMIDGS---L---------LPYEENVALTKEVVELAHKVGVSVEGEL--------GTIGNT-GTSI 139 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCC---C---------CCHHHHHHHHHHHHHHHHHcCCeEEEEE--------eeccCc-cccc
Confidence 56788999999999999543 1 2222234444444432211 34443332 553321 1221
Q ss_pred c-ccHHHHHHHHHHHHHHHHc-CCCeecC-----CCCCCc---------hHHHHHHHHHHCCCccceeecchhhhccccc
Q 014017 239 I-MNDETVHQLCKQAVSQARA-GADVVSP-----SDMMDG---------RVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (432)
Q Consensus 239 I-dND~Tl~~Lak~Avs~A~A-GADiVAP-----SDMMDG---------rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfY 302 (432)
. ..+..+-.=-++|..+.+. |+|.+|+ ..+-.+ ++..|++++ ++++.-+-.-=-+ -
T Consensus 140 ~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~------~iPLVlHGgsg~~--~ 211 (283)
T PRK08185 140 EGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV------DIPLVLHGGSANP--D 211 (283)
T ss_pred ccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh------CCCEEEECCCCCC--H
Confidence 1 1111111124566777766 9999999 777654 455565543 5677665442111 2
Q ss_pred hhhhhhhhC
Q 014017 303 GPFREALDS 311 (432)
Q Consensus 303 GPFRdAa~S 311 (432)
--||.|+..
T Consensus 212 e~~~~ai~~ 220 (283)
T PRK08185 212 AEIAESVQL 220 (283)
T ss_pred HHHHHHHHC
Confidence 346666644
No 395
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=33.95 E-value=4.9e+02 Score=25.94 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=26.7
Q ss_pred hcCCcEEEEcCCCch------hHHHHHHHhhCCCCeEEEEe
Q 014017 344 SEGADILLVKPGLPY------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 344 ~EGAD~lMVKPal~Y------LDII~~vk~~~~lPvaaYqV 378 (432)
+.|+|.|.+==+-+- .++|+.+++.+++||.+=.|
T Consensus 140 ~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v 180 (299)
T cd02809 140 AAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI 180 (299)
T ss_pred HcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec
Confidence 469998876333333 68999999999999987655
No 396
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=33.61 E-value=1.6e+02 Score=27.67 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCC
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNP 313 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM-MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap 313 (432)
..|.+.+.++++.+ |..+.++|+..+. | -..-+..||+. .+++|+. +||.-.
T Consensus 19 ~~~~~~~~~~i~~~---a~~~~~~G~~~~~---~~~~~~~~~i~~~------~~iPil~-----------~~~~~~---- 71 (219)
T cd04729 19 PGEPLHSPEIMAAM---ALAAVQGGAVGIR---ANGVEDIRAIRAR------VDLPIIG-----------LIKRDY---- 71 (219)
T ss_pred CCCCcCcHHHHHHH---HHHHHHCCCeEEE---cCCHHHHHHHHHh------CCCCEEE-----------EEecCC----
Confidence 45677766666555 4556789998875 2 01233444432 4677765 333211
Q ss_pred CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc------CC-CchhHHHHHHHhhCCCCeEE
Q 014017 314 RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK------PG-LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 314 ~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK------Pa-l~YLDII~~vk~~~~lPvaa 375 (432)
+....-++ + +. + +++.=++.|||+|.+- |. ..-.++++.+++..++|+.+
T Consensus 72 ---~~~~~~ig----~-~~-~---~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 72 ---PDSEVYIT----P-TI-E---EVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred ---CCCCceeC----C-CH-H---HHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence 00011122 2 11 1 2222256799999883 43 35678898888877788765
No 397
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=33.59 E-value=5.7e+02 Score=26.65 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCccc------C---cC----------cCCCCCH---HHHHHHHHHHC-CCe
Q 014017 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTG------D---EA----------YNDNGLV---PRTIWLLKDRY-PDL 213 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~g------s---~A----------~n~~g~v---~raIr~iK~~f-Pdl 213 (432)
++.++++++++.|.+.+.+ +|. +. .++..+ . -+ ++....+ .+-|+++++.+ |++
T Consensus 130 ~~~~~a~~~~~~Gf~~~KiKvg~-~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~ 207 (404)
T PRK15072 130 ELLDDVARHLELGYKAIRVQCGV-PG-LKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDL 207 (404)
T ss_pred HHHHHHHHHHHcCCCEEEEecCC-CC-cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCc
Confidence 5789999999999999998 442 21 111110 0 01 1111111 36789999999 689
Q ss_pred EEEeeecccCCCCC---------Ccce--eecCCCccccHHHHHHHHH----------------HHHHHHHcC-CCeecC
Q 014017 214 VIYTDVALDPYSSD---------GHDG--IVREDGVIMNDETVHQLCK----------------QAVSQARAG-ADVVSP 265 (432)
Q Consensus 214 ~IitDVcLc~YTsh---------GHcG--Il~~~g~IdND~Tl~~Lak----------------~Avs~A~AG-ADiVAP 265 (432)
.++.|.+ ..||-. -+.+ .+.+.=..++.+.+..|.+ ....+.++| +|+|-|
T Consensus 208 ~l~vDaN-~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 208 HLLHDVH-HRLTPIEAARLGKSLEPYRLFWLEDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred eEEEECC-CCCCHHHHHHHHHhccccCCcEEECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEec
Confidence 9999986 556621 1123 2322222344555555554 223344454 799999
Q ss_pred CCCCCchHHHHHHHHHHCCCccceeecc
Q 014017 266 SDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 266 SDMMDGrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
--+--|=|...++..+-+--.++.+|.+
T Consensus 287 d~~~~GGit~~~kia~lA~~~gi~~~~h 314 (404)
T PRK15072 287 TVTHAGGITHLRRIADFAALYQVRTGSH 314 (404)
T ss_pred CccccCcHHHHHHHHHHHHHcCCceeec
Confidence 8888887777777665543334555554
No 398
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=33.57 E-value=81 Score=31.71 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCeEEEeec
Q 014017 160 VQEVAKARDVGVNSVVLFPK 179 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgv 179 (432)
++.++++++.|.++|++=+.
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s 106 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGS 106 (282)
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 56888999999999999553
No 399
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=33.56 E-value=2.5e+02 Score=26.67 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHHh
Q 014017 360 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC 428 (432)
Q Consensus 360 DII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~ 428 (432)
.+++.++ ..++++.+|+| +.+.. ...+.++|+|.|+|-+-..+..++.
T Consensus 208 ~~v~~~~-~~gl~v~~~tv----------------~~~~~----~~~~~~~gvd~i~td~p~~~~~~~~ 255 (257)
T COG0584 208 ELVDDAH-AAGLKVHVWTV----------------NEEDD----IRLLLEAGVDGLITDFPDLAVAFLN 255 (257)
T ss_pred HHHHHHH-hCCCeEEEEec----------------CcHHH----HHHHHHcCCCEEEcCCHHHHHHhhc
Confidence 3455544 46899999999 33322 7788999999999999888877765
No 400
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=33.54 E-value=48 Score=32.81 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeeccc
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~L---Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc 222 (432)
++...+|.+++ .+.+.++++.+.|+..+.| +|...+ --+.+-++.||+.+| .
T Consensus 131 ~~eda~r~~~~-~l~~~~~~~~~~g~~~i~l~Dt~G~~~P--------------~~v~~~~~~~~~~~~----------~ 185 (262)
T cd07948 131 SSEDSFRSDLV-DLLRVYRAVDKLGVNRVGIADTVGIATP--------------RQVYELVRTLRGVVS----------C 185 (262)
T ss_pred EEEeeCCCCHH-HHHHHHHHHHHcCCCEEEECCcCCCCCH--------------HHHHHHHHHHHHhcC----------C
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
+..-|+|+ |...=..-++.-.++|||+|
T Consensus 186 ~i~~H~Hn-------------~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 186 DIEFHGHN-------------DTGCAIANAYAALEAGATHI 213 (262)
T ss_pred eEEEEECC-------------CCChHHHHHHHHHHhCCCEE
No 401
>PRK12346 transaldolase A; Provisional
Probab=33.49 E-value=57 Score=33.74 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHcCCCeecC
Q 014017 244 TVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAP 265 (432)
|+=-=..||+.-|+|||+.|+|
T Consensus 155 TliFS~~Qa~~aa~AGa~~ISP 176 (316)
T PRK12346 155 TLLFSFAQARACAEAGVFLISP 176 (316)
T ss_pred EEecCHHHHHHHHHcCCCEEEe
Confidence 3333467999999999999999
No 402
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.49 E-value=91 Score=29.71 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=36.7
Q ss_pred hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHH
Q 014017 359 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 427 (432)
Q Consensus 359 LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL 427 (432)
-++++.++++ ++++.+|-|.-+ |.+.-+.+.|.|.|+|-+...+.+||
T Consensus 202 ~~~v~~~~~~-G~~v~vWTVN~~--------------------~~~~~l~~~gVdgIiTD~p~~~~~~~ 249 (249)
T cd08561 202 PRFVRAAHAA-GLEVHVWTVNDP--------------------AEMRRLLDLGVDGIITDRPDLLLEVL 249 (249)
T ss_pred HHHHHHHHHC-CCEEEEEecCCH--------------------HHHHHHHhcCCCEEEcCCHHHHHhhC
Confidence 4778888775 899999998432 44455667799999999988777664
No 403
>PRK05927 hypothetical protein; Provisional
Probab=33.46 E-value=89 Score=32.34 Aligned_cols=83 Identities=19% Similarity=0.240 Sum_probs=54.8
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----cC---CCchhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHH
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADILLV----KP---GLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----KP---al~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~ 390 (432)
+.|-|+ + +|.+..+..-.+.|+.-+.+ .| --.|.|+|+.+|+.++ +-+-+|.-. |.+.+ +..
T Consensus 72 ~~y~ls----~---eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~-ei~~~--~~~ 141 (350)
T PRK05927 72 DAYLLS----F---DEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAV-EIAHA--AQV 141 (350)
T ss_pred cccccC----H---HHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHH-HHHHH--HHh
Confidence 458887 5 67777777667778855544 23 2356899999999874 655555442 22222 455
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|+.. -|.|..+|.||+|.+-
T Consensus 142 ~G~~~-----~e~l~~Lk~aGl~~l~ 162 (350)
T PRK05927 142 SGIST-----EQALERLWDAGQRTIP 162 (350)
T ss_pred cCCCH-----HHHHHHHHHcCcccCC
Confidence 68765 4677889999998554
No 404
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=33.45 E-value=96 Score=30.63 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCchh-----HHH---HHHHhhCCCCeEEEEe
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPYL-----DVI---RLLRDKYPLPIAAYQV 378 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~YL-----DII---~~vk~~~~lPvaaYqV 378 (432)
.|.+|+++.++.=.+-|||.+||=|-..|. .|+ +.+.+ ++|+..|+.
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~ 129 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNY 129 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeC
Confidence 466888888888788999999996654332 233 34445 899999985
No 405
>PRK07534 methionine synthase I; Validated
Probab=33.24 E-value=36 Score=35.05 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.7
Q ss_pred chhhHHHHHHHHHHHHcCccEeeh
Q 014017 394 IDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++..+.|.+.+..+.+||||+|+|
T Consensus 41 i~~Pe~V~~vH~~Yl~AGAdiI~T 64 (336)
T PRK07534 41 EDHPDNITALHQGFVDAGSDIILT 64 (336)
T ss_pred ccCHHHHHHHHHHHHHhcCCEEEe
Confidence 566789999999999999999986
No 406
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=33.18 E-value=2.2e+02 Score=24.91 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+++.... +...|++++- |.+.-+++++.+++.. ..|+....-..+......+.+.|..|
T Consensus 30 ~~~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 97 (219)
T PRK10336 30 FTQGRQGKEALY---SAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADD 97 (219)
T ss_pred eCCHHHHHHHHh---hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhCCCCe
Confidence 456667665442 3457999886 5556788999999864 68999988788888888888888765
No 407
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=33.17 E-value=2.5e+02 Score=27.03 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=50.0
Q ss_pred CCccccc------ccccCCCCCHHHHHHHHHhchhcCCcEEEE------cCCCchhHHHHHHHhhCCCCeEEEEechhhH
Q 014017 316 GDKKTYV------IRVIELYANYREALVEAQADESEGADILLV------KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYS 383 (432)
Q Consensus 316 gDRktYQ------md~~~~p~N~~EAlre~~~Di~EGAD~lMV------KPal~YLDII~~vk~~~~lPvaaYqVSGEYa 383 (432)
|+|.+|+ .. ..|.-|..+.-. +.|||.|-| +-....+++|+++.+.+.+|+ ||-|
T Consensus 19 G~~~~~~p~~~~~~~----~~dp~~~a~~~~---~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v---~vgG--- 85 (233)
T cd04723 19 GDRDNYRPITSNLCS----TSDPLDVARAYK---ELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGL---WVDG--- 85 (233)
T ss_pred cChhhccccccCccc----CCCHHHHHHHHH---HCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCE---EEec---
Confidence 6777776 32 334455444333 458876644 345567999999999888886 4544
Q ss_pred HHHHHHHCCCchhhHHHHHHHHHHHHcCcc-EeehhcHH
Q 014017 384 MIKAGGALKMIDEQRVMMESLMCLRRAGAD-IILTYFAL 421 (432)
Q Consensus 384 MikaAa~~G~id~~~~~~EsL~~ikRAGAd-~IiTYfA~ 421 (432)
|+=+ +|....+..+||+ +||..-+.
T Consensus 86 --------Gir~-----~edv~~~l~~Ga~~viigt~~~ 111 (233)
T cd04723 86 --------GIRS-----LENAQEWLKRGASRVIVGTETL 111 (233)
T ss_pred --------CcCC-----HHHHHHHHHcCCCeEEEcceec
Confidence 3322 5666777788987 45555443
No 408
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=33.17 E-value=2.3e+02 Score=34.23 Aligned_cols=114 Identities=24% Similarity=0.297 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
+++.++++.+.|+..+.| ||..|. ..|. -+..-++.||+++ ++ |.--|.||-.= .-
T Consensus 691 ~~~~ak~l~~~Gad~I~i--------kDt~Gl--l~P~-~~~~Lv~~lk~~~-~~---------pi~~H~Hdt~G---la 746 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGI--------KDMAGL--LKPA-AAKLLIKALREKT-DL---------PIHFHTHDTSG---IA 746 (1143)
T ss_pred HHHHHHHHHHcCCCEEEE--------CCCcCC--cCHH-HHHHHHHHHHHhc-CC---------eEEEEECCCCC---cH
Confidence 566677777777765544 333332 1111 1345666777765 32 23346665211 01
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeec--CCCCCCch----HHHHHHHHHHCCCc---cc-eeecchhhhcc---ccchhh
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVS--PSDMMDGR----VGAIRAALDAEGFQ---HV-SIMSYTAKYAS---SFYGPF 305 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVA--PSDMMDGr----V~aIR~aLD~~Gf~---~v-~ImSYSaKyAS---sfYGPF 305 (432)
+ ...+.-++||||+|= =+.|--|. +..+=.+|...|+. |. .|... ++|.. .+|.||
T Consensus 747 ~----------an~laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl~~l~~i-s~~~~~vr~~y~~~ 815 (1143)
T TIGR01235 747 V----------ASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAWIREL-SAYWEAVRNLYAAF 815 (1143)
T ss_pred H----------HHHHHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCHHHHHHH-HHHHHHHHHHhhcC
Confidence 1 124555799999983 34443332 46666778766662 12 23333 34554 589998
Q ss_pred hh
Q 014017 306 RE 307 (432)
Q Consensus 306 Rd 307 (432)
-.
T Consensus 816 ~~ 817 (1143)
T TIGR01235 816 ES 817 (1143)
T ss_pred CC
Confidence 53
No 409
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.16 E-value=1.4e+02 Score=31.92 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=34.1
Q ss_pred HHHHHHHHhchhcCCcEEEEcCC----CchhHHHHHHHhhC-CCCeEEEEe
Q 014017 333 REALVEAQADESEGADILLVKPG----LPYLDVIRLLRDKY-PLPIAAYQV 378 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMVKPa----l~YLDII~~vk~~~-~lPvaaYqV 378 (432)
.+.+.++..=++.|+|+|.+=-+ ....++|+.+|+++ ++++.+=.|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V 202 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI 202 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec
Confidence 34556666657899999996543 34569999999998 588877565
No 410
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.95 E-value=1.4e+02 Score=28.95 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC---CeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP---DLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP---dl~IitDVcLc~YTshGHcGIl~ 234 (432)
.+++.++.+++.||+.+-+= |+-.+ .-++|+.|+++|| ++.|-
T Consensus 26 ~a~~~~~al~~~Gi~~iEit---------------~~~~~-a~~~i~~l~~~~~~~p~~~vG------------------ 71 (213)
T PRK06552 26 EALKISLAVIKGGIKAIEVT---------------YTNPF-ASEVIKELVELYKDDPEVLIG------------------ 71 (213)
T ss_pred HHHHHHHHHHHCCCCEEEEE---------------CCCcc-HHHHHHHHHHHcCCCCCeEEe------------------
Confidence 58999999999999998761 11111 2369999999994 56654
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
=|.|.|-+ |+-...+|||+.+-.-.+-+. +-+...++|. .++.
T Consensus 72 -aGTV~~~~-------~~~~a~~aGA~FivsP~~~~~----v~~~~~~~~i---~~iP---------------------- 114 (213)
T PRK06552 72 -AGTVLDAV-------TARLAILAGAQFIVSPSFNRE----TAKICNLYQI---PYLP---------------------- 114 (213)
T ss_pred -eeeCCCHH-------HHHHHHHcCCCEEECCCCCHH----HHHHHHHcCC---CEEC----------------------
Confidence 25666554 444556899997653333322 2223334443 2211
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-hHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCC
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-LDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-LDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G 392 (432)
| -.+..|+++. .+.|||+|-+=|+..+ ++-|+.++..++ +|+.+ -|
T Consensus 115 -G------------~~T~~E~~~A----~~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~a---------------tG 162 (213)
T PRK06552 115 -G------------CMTVTEIVTA----LEAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMV---------------TG 162 (213)
T ss_pred -C------------cCCHHHHHHH----HHcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEE---------------EC
Confidence 1 2344676554 3599999999665433 677899998886 88765 45
Q ss_pred CchhhHHHHHHHHHHHHcCccEee
Q 014017 393 MIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 393 ~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
-++. |.+..+..+||+.+-
T Consensus 163 GI~~-----~N~~~~l~aGa~~va 181 (213)
T PRK06552 163 GVNL-----DNVKDWFAAGADAVG 181 (213)
T ss_pred CCCH-----HHHHHHHHCCCcEEE
Confidence 5664 667788899998853
No 411
>PRK12376 putative translaldolase; Provisional
Probab=32.92 E-value=42 Score=33.23 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=56.7
Q ss_pred CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC-CCccee-----ecCCCccccHHHHHHHHHHHH--HHHHc--CCC
Q 014017 192 AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS-DGHDGI-----VREDGVIMNDETVHQLCKQAV--SQARA--GAD 261 (432)
Q Consensus 192 A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs-hGHcGI-----l~~~g~IdND~Tl~~Lak~Av--s~A~A--GAD 261 (432)
+.+.++.+.+|.++ .+..|+++| =-|-|. .|-.|+ +...| |.--.|+=--..||+ ..|.+ ||+
T Consensus 67 ~~d~~~mv~eA~~l-~~~~~nv~V-----KIP~T~~~G~~gl~Ai~~L~~~G-I~vn~T~vfs~~Qa~~a~~A~ag~ga~ 139 (236)
T PRK12376 67 ADDLETMEKEAEKI-ASLGENVYV-----KIPITNTKGESTIPLIKKLSADG-VKLNVTAIFTIEQVKEVVDALTPGVPA 139 (236)
T ss_pred cCCHHHHHHHHHHH-HHhCCCeEE-----EECCcCccchhHHHHHHHHHHCC-CeEEEeeecCHHHHHHHHHHhcCCCCe
Confidence 34567888888776 556799776 138884 564553 33334 444466655667886 44444 599
Q ss_pred eecCC-CCC-----Cc--hHHHHHHHHHHCCCccceeecc
Q 014017 262 VVSPS-DMM-----DG--RVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 262 iVAPS-DMM-----DG--rV~aIR~aLD~~Gf~~v~ImSY 293 (432)
+|||= +.| || .|..|++.++.. .++-||.=
T Consensus 140 yispfvgR~dd~g~D~~~~i~~i~~i~~~~--~~tkILaA 177 (236)
T PRK12376 140 IVSVFAGRIADTGVDPVPLMKEALAICHSK--PGVELLWA 177 (236)
T ss_pred EEEEecchhhhcCCCcHHHHHHHHHHHHhC--CCcEEEEE
Confidence 99992 222 33 456677777653 36666643
No 412
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=32.91 E-value=3.9e+02 Score=26.39 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=21.6
Q ss_pred echhhhHHHHHHHHHHc-CCCeEEEeec
Q 014017 153 LGWRHGLVQEVAKARDV-GVNSVVLFPK 179 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~-GI~sv~LFgv 179 (432)
+..+ .+.+.++.+++. |++.++++|.
T Consensus 18 iD~~-~~~~~i~~l~~~~Gv~gi~~~Gs 44 (288)
T cd00954 18 INED-VLRAIVDYLIEKQGVDGLYVNGS 44 (288)
T ss_pred CCHH-HHHHHHHHHHhcCCCCEEEECcC
Confidence 3443 588899999999 9999999996
No 413
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.88 E-value=2.3e+02 Score=28.70 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHH
Q 014017 197 GLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGA 275 (432)
Q Consensus 197 g~v~raIr~iK~~fPd-l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~a 275 (432)
|-+..+++.+|+++|+ ..|+++| +| .++|...+++|||+|---.| ....
T Consensus 166 g~i~~~v~~~k~~~p~~~~I~VEv--------------------~t-------leea~~A~~~GaDiI~LDn~---~~e~ 215 (273)
T PRK05848 166 KDLKEFIQHARKNIPFTAKIEIEC--------------------ES-------LEEAKNAMNAGADIVMCDNM---SVEE 215 (273)
T ss_pred CcHHHHHHHHHHhCCCCceEEEEe--------------------CC-------HHHHHHHHHcCCCEEEECCC---CHHH
Confidence 5578899999999994 6677543 21 24677788999999985443 4555
Q ss_pred HHHHHHH
Q 014017 276 IRAALDA 282 (432)
Q Consensus 276 IR~aLD~ 282 (432)
++++...
T Consensus 216 l~~~v~~ 222 (273)
T PRK05848 216 IKEVVAY 222 (273)
T ss_pred HHHHHHH
Confidence 5655554
No 414
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=32.78 E-value=46 Score=37.38 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=36.9
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCccceeecc
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiV--APSDMMD-GrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
.-|-++|| +|...+++||||+| +=-+|=| --++.||+.|.+.|+ ++++++=
T Consensus 41 T~D~~atv----~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~-~iPLVAD 94 (606)
T PRK00694 41 TTDVDGTV----RQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGI-SIPLVAD 94 (606)
T ss_pred cccHHHHH----HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCC-CCCEEee
Confidence 34555665 45677899999998 2233333 457899999999998 6999874
No 415
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.75 E-value=82 Score=28.63 Aligned_cols=77 Identities=10% Similarity=0.194 Sum_probs=41.7
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-hHHHHHHHhhCCCCeEE
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-LDII~~vk~~~~lPvaa 375 (432)
+.+.||-.|.+.+..+- .+..|++-+..-..|..+-..-+..=++.|+|.+++-|...- .++++.+++ .++|+..
T Consensus 9 ~~~~~~~~~~~g~~~~a---~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvV~ 84 (268)
T cd06289 9 LTNPFFAELAAGLEEVL---EEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAE-SGIPVVL 84 (268)
T ss_pred CCcchHHHHHHHHHHHH---HHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHh-cCCCEEE
Confidence 34567777776665432 233465532111123332222222224689999999986432 457777654 5778876
Q ss_pred EE
Q 014017 376 YQ 377 (432)
Q Consensus 376 Yq 377 (432)
+.
T Consensus 85 ~~ 86 (268)
T cd06289 85 VA 86 (268)
T ss_pred Ee
Confidence 64
No 416
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.74 E-value=3.3e+02 Score=26.40 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=56.8
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHH
Q 014017 331 NYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ik 408 (432)
+.++++.-++.=++.|-..|=|==..+ .++.|++++++++ +-|+|=.| +|. |.+....
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTV---------------l~~-----e~a~~ai 73 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTI---------------LNA-----KQFEDAA 73 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeC---------------cCH-----HHHHHHH
Confidence 456666666665778877764432222 6899999998884 77887666 554 4667889
Q ss_pred HcCccEeehh-cHHHHHHHHhc
Q 014017 409 RAGADIILTY-FALQAARCLCG 429 (432)
Q Consensus 409 RAGAd~IiTY-fA~~~a~wL~~ 429 (432)
+|||++|+|= |.+++.+|.++
T Consensus 74 ~aGA~FivSP~~~~~vi~~a~~ 95 (201)
T PRK06015 74 KAGSRFIVSPGTTQELLAAAND 95 (201)
T ss_pred HcCCCEEECCCCCHHHHHHHHH
Confidence 9999999984 67888887654
No 417
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=32.73 E-value=88 Score=27.25 Aligned_cols=79 Identities=10% Similarity=0.157 Sum_probs=41.7
Q ss_pred ccccchhhhhhhhCCCCCCCc--ccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEE
Q 014017 298 ASSFYGPFREALDSNPRFGDK--KTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+..+.+++..+- ++ ..|++.++.--.+.......+..-+++|+|.|+.=+...-...+...-...++|+..
T Consensus 11 ~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~ 87 (269)
T cd01391 11 SAPFGAQLLAGIELAA---EEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVS 87 (269)
T ss_pred CcHHHHHHHHHHHHHH---HHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEE
Confidence 3455566655554432 22 345554332333333444444445667999999966543333133333456788877
Q ss_pred EEec
Q 014017 376 YQVS 379 (432)
Q Consensus 376 YqVS 379 (432)
+..+
T Consensus 88 ~~~~ 91 (269)
T cd01391 88 LDAT 91 (269)
T ss_pred ecCC
Confidence 6554
No 418
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=32.57 E-value=2.2e+02 Score=25.27 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..+..+++.... .+..|+|++= |.+.-+++++.+++...+|+....-..+-.....+.+.|..|
T Consensus 31 ~~~~~~~~~~~~---~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~~~~~~~~~~~~ga~~ 97 (225)
T PRK10529 31 AETLQRGLLEAA---TRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADD 97 (225)
T ss_pred eCCHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHcCCCE
Confidence 346667766543 3457898885 667778999999987789998876555556666677788754
No 419
>PTZ00411 transaldolase-like protein; Provisional
Probab=32.57 E-value=60 Score=33.80 Aligned_cols=23 Identities=39% Similarity=0.416 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
.|+=-=..||+.-|+|||++|+|
T Consensus 165 ~TlvFS~~QA~aaaeAGa~~ISP 187 (333)
T PTZ00411 165 LTLLFSFAQAVACAQAGVTLISP 187 (333)
T ss_pred EeEecCHHHHHHHHHcCCCEEEe
Confidence 34444467999999999999999
No 420
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase (pAtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=32.53 E-value=92 Score=29.86 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=39.0
Q ss_pred hcCCcEEEEcCCC--chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcH
Q 014017 344 SEGADILLVKPGL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 344 ~EGAD~lMVKPal--~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
+.+++.+-+=+.. ..-+.++.++. +++|.+|.|-. . |.+.-+.+.|+|.|||-+-
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~v~~~~~--g~~v~~WTVn~----------------~----~~~~~l~~~GVdgIiTD~P 231 (235)
T cd08565 175 ALKAHIVAVEQSLLAATWELVRAAVP--GLRLGVWTVND----------------D----SLIRYWLACGVRQLTTDRP 231 (235)
T ss_pred hccCcEEccCcccccCCHHHHHHHhC--CCEEEEEccCC----------------H----HHHHHHHHcCCCEEEeCCc
Confidence 4677877766653 44567777752 89999999932 2 4455677789999999764
No 421
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=32.50 E-value=6.3 Score=37.52 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE----------eeecccCCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY----------TDVALDPYSSD 227 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii----------tDVcLc~YTsh 227 (432)
++.+.++++.+.|++-++- +. +. ++...... ....+..+.|..-+.-.|++=. .|+.+.--...
T Consensus 113 ~i~~v~~~~~~~gl~vIlE-~~-l~---~~~~~~~~-~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~ 186 (236)
T PF01791_consen 113 EIAAVVEECHKYGLKVILE-PY-LR---GEEVADEK-KPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVE 186 (236)
T ss_dssp HHHHHHHHHHTSEEEEEEE-EC-EC---HHHBSSTT-HHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEE-Ee-cC---chhhcccc-cHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHH
Confidence 4666666777888886665 64 21 11111111 2235667777776665665544 12222111122
Q ss_pred -----CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 228 -----GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 228 -----GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
|++||+-.+|. +.+++..-.++|+.+-++|||.+.
T Consensus 187 ~~~~p~~~~Vk~sGGi--~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 187 AAPVPGKVGVKASGGI--DAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp THSSTTTSEEEEESSS--SHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred hcCCCcceEEEEeCCC--ChHHHHHHHHHHHHHHHcCChhHH
Confidence 89999976665 899999999999999999999854
No 422
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.48 E-value=94 Score=30.16 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=37.0
Q ss_pred cccccCCCCCHHHHHHHHHhchh-cCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEEE
Q 014017 322 VIRVIELYANYREALVEAQADES-EGADILLVKPGLPY-----LDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 322 Qmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaaY 376 (432)
.+| |.-. |.+.+....+. -|+|.+||=-..-. .++++.+|+.+++|+.-.
T Consensus 4 ~iD----P~k~-e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilf 59 (205)
T TIGR01769 4 LID----PEKS-DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILF 59 (205)
T ss_pred ccC----CCcH-HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEE
Confidence 467 8776 66766665665 46999999776422 557899999999999864
No 423
>PLN02229 alpha-galactosidase
Probab=32.12 E-value=2.7e+02 Score=30.23 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=72.1
Q ss_pred ceeechhhhHHHHHHH------HHHcCCCeEEE----eecCCCCCCCcccCcCcCC----CCCHHHHHHHHHHHCCCeEE
Q 014017 150 CYRLGWRHGLVQEVAK------ARDVGVNSVVL----FPKVPDALKSPTGDEAYND----NGLVPRTIWLLKDRYPDLVI 215 (432)
Q Consensus 150 v~r~si~~~l~~~v~~------~~~~GI~sv~L----Fgvi~~~~Kd~~gs~A~n~----~g~v~raIr~iK~~fPdl~I 215 (432)
.|+..+++..+++..+ +.++|.+-|.| |+ ..+|+.|.--.|+ +| +..-...++++-=...|
T Consensus 72 ~~~~~i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~----~~rd~~G~l~~d~~rFP~G-~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 72 FFACNINETVIKETADALVSTGLADLGYIHVNIDDCWSN----LKRDSKGQLVPDPKTFPSG-IKLLADYVHSKGLKLGI 146 (427)
T ss_pred hhCcccCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCC----CCcCCCCCEEEChhhcCCc-HHHHHHHHHHCCCceEE
Confidence 3455555555555554 37888888887 32 2366777554454 34 33455566666667889
Q ss_pred EeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec------CCCCCCchHHHHHHHHHHCCC
Q 014017 216 YTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS------PSDMMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 216 itDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA------PSDMMDGrV~aIR~aLD~~Gf 285 (432)
++|.... |=.|.-|-+ |.- ..-|-.+|+=|.|.|= +..-+..+..++++||++.|-
T Consensus 147 y~d~G~~--TC~~~pGS~---g~e---------~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tGR 208 (427)
T PLN02229 147 YSDAGVF--TCQVRPGSL---FHE---------VDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATGR 208 (427)
T ss_pred eccCCCc--ccCCCCCCc---cHH---------HHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhCC
Confidence 8886521 222333332 111 1227779999999873 333367789999999999984
No 424
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=32.12 E-value=54 Score=33.82 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
.|+=-=..||+.-|+|||++|+|
T Consensus 153 ~TlvFS~~Qa~~aa~AGa~~ISP 175 (313)
T cd00957 153 LTLLFSFAQAVACAEAGVTLISP 175 (313)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 44444467999999999999999
No 425
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=32.08 E-value=76 Score=30.19 Aligned_cols=48 Identities=25% Similarity=0.576 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014017 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.+.+.++.+.+.|+ +.+.+..+|.. +++|+.|.++||++-|+| .|+|+
T Consensus 136 s~~~ai~~L~~~G~~~~~I~~v~~ias-----------------~~Gl~~l~~~~P~v~I~t-a~iD~ 185 (207)
T PF14681_consen 136 SAIAAIEILKEHGVPEENIIIVSVIAS-----------------PEGLERLLKAFPDVRIYT-AAIDP 185 (207)
T ss_dssp HHHHHHHHHHHTTG-GGEEEEEEEEEE-----------------HHHHHHHHHHSTTSEEEE-EEEES
T ss_pred hHHHHHHHHHHcCCCcceEEEEEEEec-----------------HHHHHHHHHhCCCeEEEE-EEEcc
Confidence 58999999999998 68888776542 469999999999998886 34444
No 426
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=32.02 E-value=1e+02 Score=33.10 Aligned_cols=54 Identities=31% Similarity=0.429 Sum_probs=38.9
Q ss_pred hhcCCcEEEEcCC----CchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 343 ESEGADILLVKPG----LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 343 i~EGAD~lMVKPa----l~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++-|+|+|.|.-+ ..-+|.|+.+|+++ ++||.+=. ..+ .|....+.+||||+|.
T Consensus 237 ~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~---------------v~t-----~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 237 VEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGN---------------VAT-----AEAARALIEAGADAVK 295 (486)
T ss_pred HHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEec---------------cCC-----HHHHHHHHHcCCCEEE
Confidence 4579999998754 34688999999998 79988722 223 3444566688999984
No 427
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=32.01 E-value=1.1e+02 Score=29.61 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhh
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDK 368 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~ 368 (432)
+.|..|+++.+. +-|.+++.+|-+... +++|+.+|+.
T Consensus 11 ~~~~~~~l~~~~---~~~~~~~~ikvg~~~f~~~G~~~i~~l~~~ 52 (230)
T PRK00230 11 FPSKEEALAFLD---QLDPAVLFVKVGMELFTAGGPQFVRELKQR 52 (230)
T ss_pred CCCHHHHHHHHH---hcCCcccEEEEcHHHHHhcCHHHHHHHHhc
Confidence 778899888664 357788889988654 7889999886
No 428
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=31.78 E-value=52 Score=31.23 Aligned_cols=72 Identities=25% Similarity=0.304 Sum_probs=0.0
Q ss_pred ccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch---------hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCC
Q 014017 323 IRVIELYANYREALVEAQADESEGADILLVKPGLPY---------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y---------LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
+| +.+.+||+ +....+....|++ |+++++ ..+++.+|+.+ .||. ++.+.
T Consensus 7 LD----~~~~~~a~-~i~~~~~~~v~~i--KvG~~l~~~~G~~~l~~~i~~l~~~~-~~I~--------------~D~K~ 64 (226)
T PF00215_consen 7 LD----PTDLEEAL-RIADELGDYVDII--KVGTPLFLAYGLEALPEIIEELKERG-KPIF--------------LDLKL 64 (226)
T ss_dssp E-----SSSHHHHH-HHHHHHGGGSSEE--EEEHHHHHHHCHHHHHHHHHHHHHTT-SEEE--------------EEEEE
T ss_pred eC----CCCHHHHH-HHHHHhcCcceEE--EEChHHHhcCChhhHHHHHHHHHHhc-CCEe--------------eeeee
Q ss_pred chhhHHHHHHHH---HHHHcCccEee
Q 014017 394 IDEQRVMMESLM---CLRRAGADIIL 416 (432)
Q Consensus 394 id~~~~~~EsL~---~ikRAGAd~Ii 416 (432)
.|--..+..... .+..+|||++.
T Consensus 65 ~Dig~t~~~~~~~~~~~~~~gaD~vT 90 (226)
T PF00215_consen 65 GDIGNTVARYAEAGFAAFELGADAVT 90 (226)
T ss_dssp -SSHHHHHHHHHSCHHHHTTTESEEE
T ss_pred cccchHHHHHHHHhhhhhcCCCcEEE
No 429
>PRK05443 polyphosphate kinase; Provisional
Probab=31.54 E-value=1.7e+02 Score=33.50 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHcCCCe--ecCCCCCCchHHHHHHHHHHCCCccceeecchh----hhccccchhhhhhhhCCCCCC
Q 014017 243 ETVHQLCKQAVSQARAGADV--VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA----KYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADi--VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa----KyASsfYGPFRdAa~Sap~~g 316 (432)
+.+-...+..|..-+-|.=| .-=++|=.--+..+++.|+ .++--++.... ++-..|.++-+..+.-.|. -
T Consensus 244 ~dl~~~i~~~Lk~R~~g~~VRle~~~~mp~~~~~~L~~~l~---l~~~~~~~~~gplnl~~l~~~~~~~~~~L~~~p~-~ 319 (691)
T PRK05443 244 EDLLEALEKELKRRRFGEVVRLEVEADMPEELLEFLLEELG---LSEDDVYRVDGPLNLTDLMQLPDVDRPDLKFPPF-T 319 (691)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHHHHcC---cChhHEEEcCCcccHHHHHhhcCCChhhccCCCC-C
Confidence 45555666788888888654 3334444445556665553 32222222222 2333343322222221111 0
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC------CCCeEEEEechhhHHHHH---
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY------PLPIAAYQVSGEYSMIKA--- 387 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~------~lPvaaYqVSGEYaMika--- 387 (432)
-...=.++ =..|.-++|++ =|+|+-=|=..|-=||+.+++.. .+-+.-|-|++.-.+++|
T Consensus 320 p~~~~~~~---~~~~if~~I~~--------~DiLLh~PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s~iv~aL~~ 388 (691)
T PRK05443 320 PRRPPRLD---HGGDIFAAIRE--------KDILLHHPYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIE 388 (691)
T ss_pred CCCCcccc---cCCCHHHHHhh--------CCEEEECCccCchHHHHHHHHhccCCCeeEEEEEEEEecCCHHHHHHHHH
Confidence 00000011 01244454433 48999999888855556666544 389999999999888877
Q ss_pred HHHCCC-----------chhhHHHHHHHHHHHHcCccEeehhc
Q 014017 388 GGALKM-----------IDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 388 Aa~~G~-----------id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|+++|. +|+ +.-..-...+.+||+.+|..|-
T Consensus 389 Aa~~Gk~V~vlve~karfde-~~n~~~~~~L~~aGv~V~y~~~ 430 (691)
T PRK05443 389 AAENGKQVTVLVELKARFDE-EANIRWARRLEEAGVHVVYGVV 430 (691)
T ss_pred HHHcCCEEEEEEccCccccH-HHHHHHHHHHHHcCCEEEEccC
Confidence 888884 344 2445566788899999987664
No 430
>PLN02417 dihydrodipicolinate synthase
Probab=31.50 E-value=1.1e+02 Score=30.18 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEech
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 380 (432)
-.|.+|+++.++.=.+-|||.+||=|-..| .+-.+.+.+.. |+..|+.-+
T Consensus 79 ~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi~lYn~P~ 135 (280)
T PLN02417 79 SNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PTIIYNVPG 135 (280)
T ss_pred CccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CEEEEEChh
Confidence 347789998888888899999999876433 23333444543 999997643
No 431
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=31.46 E-value=30 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=38.2
Q ss_pred eecCCCCCCchHHHHHHHHHHCCC--ccceeecchhhhccccchhhhh
Q 014017 262 VVSPSDMMDGRVGAIRAALDAEGF--QHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 262 iVAPSDMMDGrV~aIR~aLD~~Gf--~~v~ImSYSaKyASsfYGPFRd 307 (432)
+|=|..+..|+++.|-+.|.++|| ...-.+.-+...+..||..+++
T Consensus 7 iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~ 54 (134)
T PRK00668 7 IIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKE 54 (134)
T ss_pred EECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcC
Confidence 466777778999999999999999 5667788888899999975543
No 432
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.41 E-value=5e+02 Score=27.16 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=32.7
Q ss_pred hhHHHHHHHhhCCCCeEEEEechhhHHH--------H-HHHHCCCchhhHHHHHHHHH-HHHcCccEeehhcH
Q 014017 358 YLDVIRLLRDKYPLPIAAYQVSGEYSMI--------K-AGGALKMIDEQRVMMESLMC-LRRAGADIILTYFA 420 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaYqVSGEYaMi--------k-aAa~~G~id~~~~~~EsL~~-ikRAGAd~IiTYfA 420 (432)
.-+.++++++ .++.|.+|.|-=|-.++ . .... +...-+.+-+.. ++++|.|.|+|=|.
T Consensus 280 ~~~~v~~Ah~-~GL~V~~WTvr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~GvDGvftD~p 347 (356)
T cd08560 280 PSEYAKAAKA-AGLDIITWTLERSGPLASGGGWYYQTIEDVI----NNDGDMYNVLDVLARDVGILGIFSDWP 347 (356)
T ss_pred CHHHHHHHHH-cCCEEEEEEeecCcccccCcccccccccccc----cccccHHHHHHHHHHhcCCCEEEccCC
Confidence 4477777766 58999999993221111 1 1111 112222233333 45999999998653
No 433
>PLN02757 sirohydrochlorine ferrochelatase
Probab=31.37 E-value=3.8e+02 Score=24.68 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
++.+-++++.+.|.+.|+++|..=. .|... ..=+++.+..+++++|++-|.
T Consensus 59 sl~eal~~l~~~g~~~vvVvP~FL~-----~G~H~---~~DIp~~v~~~~~~~p~~~i~ 109 (154)
T PLN02757 59 SIKDAFGRCVEQGASRVIVSPFFLS-----PGRHW---QEDIPALTAEAAKEHPGVKYL 109 (154)
T ss_pred CHHHHHHHHHHCCCCEEEEEEhhhc-----CCcch---HhHHHHHHHHHHHHCCCcEEE
Confidence 4677788888999999999876321 12222 223577899999999998877
No 434
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=31.23 E-value=5.2e+02 Score=28.45 Aligned_cols=149 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCee--cCCCCCCchHHHHHHHHHHCCCccceeecch-hhhc--------------------cc
Q 014017 244 TVHQLCKQAVSQARAGADVV--SPSDMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYA--------------------SS 300 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiV--APSDMMDGrV~aIR~aLD~~Gf~~v~ImSYS-aKyA--------------------Ss 300 (432)
|++.=.++|-.+.++|.|.| .=+.+-.+...++|+..+ .+..++-|++.+ ++-. -.
T Consensus 21 s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~-~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~ 99 (526)
T TIGR00977 21 SLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKE-MNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVT 99 (526)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHH-hCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEE
Q ss_pred cchhh--------------------hhhhhCCCCCCCc---------ccccccccCCCCCHHHHHHHHHhchhcCCcEEE
Q 014017 301 FYGPF--------------------REALDSNPRFGDK---------KTYVIRVIELYANYREALVEAQADESEGADILL 351 (432)
Q Consensus 301 fYGPF--------------------RdAa~Sap~~gDR---------ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lM 351 (432)
+|.|- ++++.-+-..|.+ ..|--| |.-..|.++.+. +-|||.|.
T Consensus 100 i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~----~~~l~~~~~~a~---~aGad~i~ 172 (526)
T TIGR00977 100 IFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKAN----PEYALATLATAQ---QAGADWLV 172 (526)
T ss_pred EEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCC----HHHHHHHHHHHH---hCCCCeEE
Q ss_pred Ec------CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 352 VK------PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 352 VK------Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
+. -=.-+-++|+.++++++.|...+|- -=|.--.+-.+|.++ +|||+.|
T Consensus 173 i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~--------------HND~GlAvANslaAv-~AGA~~V 227 (526)
T TIGR00977 173 LCDTNGGTLPHEISEITTKVKRSLKQPQLGIHA--------------HNDSGTAVANSLLAV-EAGATMV 227 (526)
T ss_pred EecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEE--------------CCCCChHHHHHHHHH-HhCCCEE
No 435
>PRK05660 HemN family oxidoreductase; Provisional
Probab=31.21 E-value=3.1e+02 Score=28.36 Aligned_cols=102 Identities=15% Similarity=0.149 Sum_probs=63.2
Q ss_pred echhhhHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014017 153 LGWRHGLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv---~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGH 229 (432)
++.. ++.+.++.+.+.|++.| ++||. |....+ -+.+.++.+.+.-|+-+-+-...+-|-|.-.|
T Consensus 140 ~~~~-~~~~ai~~~~~~G~~~v~~dli~Gl-pgqt~~-----------~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~ 206 (378)
T PRK05660 140 HGPD-EAKRAAKLAQGLGLRSFNLDLMHGL-PDQSLE-----------EALDDLRQAIALNPPHLSWYQLTIEPNTLFGS 206 (378)
T ss_pred CCHH-HHHHHHHHHHHcCCCeEEEEeecCC-CCCCHH-----------HHHHHHHHHHhcCCCeEEeeccEeccCCcccc
Confidence 3443 57788889999999754 77994 653222 25678888888778866665555555554433
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhh
Q 014017 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (432)
Q Consensus 230 cGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaK 296 (432)
- .....+.|+..+ .-..+.+.|.++||....|=.||-+
T Consensus 207 ~----~~~~~~~~~~~~-------------------------~~~~~~~~L~~~Gy~~yei~~fa~~ 244 (378)
T PRK05660 207 R----PPVLPDDDALWD-------------------------IFEQGHQLLTAAGYQQYETSAYAKP 244 (378)
T ss_pred c----CCCCcCHHHHHH-------------------------HHHHHHHHHHHcCCcEeecccccCC
Confidence 1 111112122111 2345677888899988888888664
No 436
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=31.20 E-value=4.5e+02 Score=24.66 Aligned_cols=112 Identities=19% Similarity=0.297 Sum_probs=62.2
Q ss_pred CchHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCc
Q 014017 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGAD 348 (432)
Q Consensus 270 DGrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD 348 (432)
.+-+..+-+.|.+.|. .++.+.||..+....+ | .-.|.+ +..|... ....++.. ... .-+++
T Consensus 117 ~~~~~~l~~~l~~~~~~~~v~~~Sf~~~~l~~~----~---~~~p~~--~~~~l~~-----~~~~~~~~-~~~--~~~~~ 179 (230)
T cd08563 117 PGIEKKVLELVKEYNLEDRVIFSSFNHESLKRL----K---KLDPKI--KLALLYE-----TGLQDPKD-YAK--KIGAD 179 (230)
T ss_pred hhHHHHHHHHHHHcCCCCCEEEEcCCHHHHHHH----H---HHCCCC--cEEEEec-----CcccCHHH-HHH--HhCCE
Confidence 3456678888888876 6688888866543322 2 223442 2233221 11111111 111 13466
Q ss_pred EEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 349 ILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 349 ~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
.+-+.-....-++|+.+++. ++++.+|-| |.. |.+.-+.+.|+|.|+|=+
T Consensus 180 ~v~~~~~~~~~~~i~~~~~~-g~~v~~Wtv----------------n~~----~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 180 SLHPDFKLLTEEVVEELKKR-GIPVRLWTV----------------NEE----EDMKRLKDLGVDGIITNY 229 (230)
T ss_pred EEccCchhcCHHHHHHHHHC-CCEEEEEec----------------CCH----HHHHHHHHCCCCEEeCCC
Confidence 66554333334677777765 899999987 322 344556667999999843
No 437
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=31.20 E-value=4.5e+02 Score=24.67 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcc
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKK 319 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRk 319 (432)
+..+.++.++++|.. .|+|.|.-+ -|.+...|+.|...+ +. -+++ .+.|. |.
T Consensus 14 ~t~~~i~~~~~~a~~---~~~~av~v~---p~~v~~~~~~l~~~~-----~~-----v~~~---------~~fp~-g~-- 65 (203)
T cd00959 14 ATEEDIRKLCDEAKE---YGFAAVCVN---PCFVPLAREALKGSG-----VK-----VCTV---------IGFPL-GA-- 65 (203)
T ss_pred CCHHHHHHHHHHHHH---cCCCEEEEc---HHHHHHHHHHcCCCC-----cE-----EEEE---------EecCC-CC--
Confidence 466677777777776 578877644 577887777774322 11 1111 12222 22
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc---------hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHH
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVKPGLP---------YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~---------YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa 389 (432)
. ....-+.|++.=++.|||-|-+=+-.- .++-|.++++.. ++|+-+--=
T Consensus 66 ---~-------~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e----------- 124 (203)
T cd00959 66 ---T-------TTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILE----------- 124 (203)
T ss_pred ---C-------cHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEe-----------
Confidence 1 123445555555677999987744332 345556666654 477655222
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeehh--cH
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILTY--FA 420 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiTY--fA 420 (432)
.|.++. +.+.-.-.....+|||+|=|+ |.
T Consensus 125 -~~~l~~-~~i~~a~ria~e~GaD~IKTsTG~~ 155 (203)
T cd00959 125 -TGLLTD-EEIIKACEIAIEAGADFIKTSTGFG 155 (203)
T ss_pred -cCCCCH-HHHHHHHHHHHHhCCCEEEcCCCCC
Confidence 233343 344555666778999999998 87
No 438
>TIGR00035 asp_race aspartate racemase.
Probab=31.17 E-value=2e+02 Score=27.45 Aligned_cols=176 Identities=17% Similarity=0.213 Sum_probs=87.7
Q ss_pred CCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCCc---------------hH
Q 014017 210 YPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMDG---------------RV 273 (432)
Q Consensus 210 fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-MMDG---------------rV 273 (432)
++.++|+-+..+-..|.+ +++. +.++=...+.+.+-.+.++|||.|.=.. -+.. -+
T Consensus 34 ~~~~i~~~~~~~~dr~~~----~~~~----~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iPii~i~ 105 (229)
T TIGR00035 34 HPAEVLFNNPNIPDRTAY----ILGR----GEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIPLISMI 105 (229)
T ss_pred CCceeeeeCCCHHHHHHH----HhcC----CcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCCEechH
Confidence 455666666554444322 2221 1233556677888888899999875332 2222 22
Q ss_pred HHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCC-HHHHHHHHHh-chhcCCcEEE
Q 014017 274 GAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYAN-YREALVEAQA-DESEGADILL 351 (432)
Q Consensus 274 ~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N-~~EAlre~~~-Di~EGAD~lM 351 (432)
.+.-+++.+.|..+|+||+=..--.|.+|.-+-+..+ +.|+. |.. ..+.+.+... ++..| ++
T Consensus 106 ~~~~~~~~~~~~~~VgvLaT~~T~~s~~y~~~l~~~g------------~~v~~-p~~~~~~~i~~~i~~~~~~g-~~-- 169 (229)
T TIGR00035 106 EETAEAVKEDGVKKAGLLGTKGTMKDGVYEREMKKHG------------IEIVT-PDKEEQEAIMSGIYDEVKAG-NI-- 169 (229)
T ss_pred HHHHHHHHHcCCCEEEEEecHHHHHhHHHHHHHHHCC------------CEEEC-CCHHHHHHHHHHHHHHHhcC-Cc--
Confidence 3333445667888999997776677877654433222 12221 322 1223333333 33444 11
Q ss_pred EcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHH--HCCCchhhHHHHHHHHHHHHcC
Q 014017 352 VKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG--ALKMIDEQRVMMESLMCLRRAG 411 (432)
Q Consensus 352 VKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa--~~G~id~~~~~~EsL~~ikRAG 411 (432)
-..-..+..+++.+.++ + .=+.-.---||.+++... ..-++|.-+++-+.+..+-.+|
T Consensus 170 ~~~~~~l~~~~~~l~~~-g-ad~iILgCTelpll~~~~~~~~pviD~~~~~a~~~v~~a~~~ 229 (229)
T TIGR00035 170 ELGRELLLKIAKELEER-G-AEGIILGCTELSLILKADDLDVPLIDPMDVIAEAAVKLALEG 229 (229)
T ss_pred HHHHHHHHHHHHHHHhC-C-CCEEEEeCcchHhhcccccCCCCeEchHHHHHHHHHHHHhcC
Confidence 11222344555555432 1 111122234666665311 1236788777777766554443
No 439
>PLN02389 biotin synthase
Probab=31.05 E-value=96 Score=32.55 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=44.0
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEE-EE-------cC---CCchhHHHHHHHhhCCCCeEEEEechhhHHHHH
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADIL-LV-------KP---GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKA 387 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l-MV-------KP---al~YLDII~~vk~~~~lPvaaYqVSGEYaMika 387 (432)
+-|.|+ + +|.+.++..-.+.|+.-+ || .| -..|+|+++.+|+ .++++.
T Consensus 112 ~~~~Ls----~---EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-~~l~i~------------- 170 (379)
T PLN02389 112 AQKLMS----K---DDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-MGMEVC------------- 170 (379)
T ss_pred ccccCC----H---HHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-CCcEEE-------------
Confidence 345677 5 565666655556788664 44 21 2256889999984 455543
Q ss_pred HHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 388 GGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 388 Aa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
..+|.+++ |.+..+|.||.|.+
T Consensus 171 -~s~G~l~~-----E~l~~LkeAGld~~ 192 (379)
T PLN02389 171 -CTLGMLEK-----EQAAQLKEAGLTAY 192 (379)
T ss_pred -ECCCCCCH-----HHHHHHHHcCCCEE
Confidence 34676654 56677888888865
No 440
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=30.96 E-value=87 Score=31.33 Aligned_cols=91 Identities=9% Similarity=-0.021 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCCCH---HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNGLV---PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g~v---~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~ 235 (432)
.+.++.+.+.|.+.|-+|-.+++. .+...+ .+.+..+ .+.++..|+..-++.+..--.-|||+.
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~---~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~--------- 144 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR---KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRD--------- 144 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC---cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcC---------
Confidence 457888999999999998644431 121211 2223333 344666666544433222114466621
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD 270 (432)
+.+.+.+.+-...++|||.|.=.|+.=
T Consensus 145 --------~~~~~~~~~~~~~~~G~~~i~l~DT~G 171 (280)
T cd07945 145 --------SPDYVFQLVDFLSDLPIKRIMLPDTLG 171 (280)
T ss_pred --------CHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 124566666667889999999888754
No 441
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=30.83 E-value=1.1e+02 Score=32.67 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=46.0
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCc---CCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCc
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAY---NDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~---n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGH 229 (432)
|+++.--...++.+.+.|+..+.+ |++.+..-....+++. +.+..+.+++.++|+.+++++.+-=+.+|- ..||
T Consensus 210 y~~~p~~pTvld~l~~aG~~V~~V-Gki~DiF~g~Glt~a~~~~~~~~~~~~~l~aL~~~~~~lif~nl~d~D~--~~GH 286 (381)
T TIGR01696 210 YALKPFAPTVLQKLKDEGHDVISI-GKIADIYDGEGITKKVRTTSNMDGMDATIKEMKEDFTGISFTNLVDFDA--LWGH 286 (381)
T ss_pred CCCCCCCCCHHHHHHHCCCeEEEE-ccHHhEecCCCcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEeCCCcc--ccCC
Confidence 344432345777899999986655 6654333223233333 334457789999998888876664444442 2388
Q ss_pred ce
Q 014017 230 DG 231 (432)
Q Consensus 230 cG 231 (432)
.+
T Consensus 287 ~~ 288 (381)
T TIGR01696 287 RR 288 (381)
T ss_pred CC
Confidence 77
No 442
>PRK10200 putative racemase; Provisional
Probab=30.75 E-value=1.9e+02 Score=28.00 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=40.8
Q ss_pred CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee------hhcHHHHHHH
Q 014017 371 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL------TYFALQAARC 426 (432)
Q Consensus 371 lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii------TYfA~~~a~w 426 (432)
.|...++..---....+-...+|-+....+.|.+..+.++|||+|+ +||..++.++
T Consensus 35 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~ 96 (230)
T PRK10200 35 SAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESR 96 (230)
T ss_pred CCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHh
Confidence 6666666655445544444467878889999999999999999997 5776665554
No 443
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=30.68 E-value=5.4e+02 Score=26.87 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCC-------
Q 014017 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDG------- 228 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTshG------- 228 (432)
++.++++++++.|.+.+-+ +|. .| .+ --.+.|+++++.+ |++.++.|.. +.||...
T Consensus 163 ~~~~~a~~~~~~Gf~~~Kikvg~-----~~------~~---~di~~v~avRe~~G~~~~l~vDaN-~~w~~~~A~~~~~~ 227 (385)
T cd03326 163 RLRDEMRRYLDRGYTVVKIKIGG-----AP------LD---EDLRRIEAALDVLGDGARLAVDAN-GRFDLETAIAYAKA 227 (385)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC-----CC------HH---HHHHHHHHHHHhcCCCCeEEEECC-CCCCHHHHHHHHHH
Confidence 4788999999999999988 221 00 00 1146788888888 7899999986 6675220
Q ss_pred --ccee--ecCCCccccHHHHHHHHH----------------HHHHHHHcCC-----CeecCCCCCCchHHHHHHHHHH
Q 014017 229 --HDGI--VREDGVIMNDETVHQLCK----------------QAVSQARAGA-----DVVSPSDMMDGRVGAIRAALDA 282 (432)
Q Consensus 229 --HcGI--l~~~g~IdND~Tl~~Lak----------------~Avs~A~AGA-----DiVAPSDMMDGrV~aIR~aLD~ 282 (432)
.-++ +.+.=..+|.+.+..|.+ ....+.+.|| |+|-|.=|--|=+...++..+-
T Consensus 228 l~~~~~~~iEeP~~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~l 306 (385)
T cd03326 228 LAPYGLRWYEEPGDPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDV 306 (385)
T ss_pred hhCcCCCEEECCCCccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHH
Confidence 1122 332222345555666655 2333344554 9999988877766665555544
No 444
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=30.62 E-value=2.4e+02 Score=27.72 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=51.7
Q ss_pred HHHHHHHHHhchhcCCcEE------EEcCCCc-hhHHHHHHHhh-CCCCeE-EE---------Eech-hh-HHHHHHHHC
Q 014017 332 YREALVEAQADESEGADIL------LVKPGLP-YLDVIRLLRDK-YPLPIA-AY---------QVSG-EY-SMIKAGGAL 391 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~l------MVKPal~-YLDII~~vk~~-~~lPva-aY---------qVSG-EY-aMikaAa~~ 391 (432)
..|.+......-.++||+| +-++... ..++++.+++. .++|+. .| +.|- || ..++.++..
T Consensus 16 ~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~ 95 (238)
T PRK13575 16 IEETLIQKINHRIDAIDIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFTNDLYLNLLSDLANI 95 (238)
T ss_pred cchhHHHHHHhcCCCCCEEEEEeccccCCCHHHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCCCHHHHHHHHHHHHHh
Confidence 4666544454456888887 2222222 23477777774 467764 33 3332 22 455656655
Q ss_pred C---Cchhh-------HHHHHHHHHHHHcCccEeehhc
Q 014017 392 K---MIDEQ-------RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 392 G---~id~~-------~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+ ++|-+ +.+-|.+..+++.|..+|+||+
T Consensus 96 ~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H 133 (238)
T PRK13575 96 NGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHH 133 (238)
T ss_pred CCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecC
Confidence 4 45544 3455556777889999999999
No 445
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=30.53 E-value=2.5e+02 Score=26.71 Aligned_cols=95 Identities=17% Similarity=0.243 Sum_probs=53.2
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcc
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP--dl~IitDVcLc~YTshGHc 230 (432)
.|+...+.+.++++.+.|+++|=||..-|.. |....+-...++.+|+.+- +|-|. +..||..
T Consensus 6 ~~~~~~~~~~~~~~~~~G~~~vel~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~gl~ls---~h~p~~~---- 69 (273)
T smart00518 6 VSAAGGLYKAFIEAVDIGARSFQLFLGNPRS---------WKGVRLSEETAEKFKEALKENNIDVS---VHAPYLI---- 69 (273)
T ss_pred EcccCcHhHHHHHHHHcCCCEEEEECCCCCC---------CCCCCCCHHHHHHHHHHHHHcCCCEE---EECCcee----
Confidence 4444567889999999999999999863321 2211222334444444432 23332 1235420
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
-+... ..-.-+.+++.+-+..-.-++-||+.|.
T Consensus 70 nl~s~-d~~~r~~~~~~l~~~i~~A~~lGa~~vv 102 (273)
T smart00518 70 NLASP-DKEKVEKSIERLIDEIKRCEELGIKALV 102 (273)
T ss_pred cCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 11111 1112357777777777677778998665
No 446
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.52 E-value=1.1e+02 Score=33.05 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=37.8
Q ss_pred cccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC----CchhHHHHHHHhhC-CCCeEEEEe
Q 014017 322 VIRVIELYANYREALVEAQADESEGADILLVKPG----LPYLDVIRLLRDKY-PLPIAAYQV 378 (432)
Q Consensus 322 Qmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa----l~YLDII~~vk~~~-~lPvaaYqV 378 (432)
|+.|-++-+-..+....+..=+++|+|+|.|=.+ ..-+|.|+.+|++| +++|.|=+|
T Consensus 215 ~l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv 276 (479)
T PRK07807 215 RLRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNV 276 (479)
T ss_pred ccchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeecc
Confidence 4443333333333333333335689999998655 44599999999999 599998777
No 447
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=30.36 E-value=4e+02 Score=25.90 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.-+.|++++++.|...|-+.-.+. ..|+ .....+.+-|+.|++...++.+. -|+ |.+
T Consensus 71 ~K~~E~~~Av~~GAdEiDvv~n~g-~l~~-------g~~~~v~~ei~~i~~~~~g~~lK--------------vIl-E~~ 127 (211)
T TIGR00126 71 VKLYETKEAIKYGADEVDMVINIG-ALKD-------GNEEVVYDDIRAVVEACAGVLLK--------------VII-ETG 127 (211)
T ss_pred HHHHHHHHHHHcCCCEEEeecchH-hhhC-------CcHHHHHHHHHHHHHHcCCCeEE--------------EEE-ecC
Confidence 357889999999999988743332 2222 11244556677777765432222 133 456
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC------chHHHHHHHHH
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD------GRVGAIRAALD 281 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD------GrV~aIR~aLD 281 (432)
.+. |+-+... +-.-.++|||+|=.|-=-- +.|..+|+.+.
T Consensus 128 ~L~-~~ei~~a---~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 128 LLT-DEEIRKA---CEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCC-HHHHHHH---HHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc
Confidence 643 4334444 4455789999998773222 55666666653
No 448
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=30.20 E-value=6.3e+02 Score=26.07 Aligned_cols=159 Identities=19% Similarity=0.277 Sum_probs=99.5
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHH-------HHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTI-------WLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raI-------r~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
+-+.|+.- +|.|- ..|-..+..++-++-++ +..+..-|+.+|++|.-+-+|
T Consensus 31 ~d~agvd~-lLVGD-------Slgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~DmPF~sy-------------- 88 (268)
T COG0413 31 FDQAGVDV-LLVGD-------SLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVADLPFGSY-------------- 88 (268)
T ss_pred hhhcCCcE-EEEec-------cHHHHHcCCCCcceecHHHHHHHHHHHHhcCCCeeEEeCCCCccc--------------
Confidence 33556754 44452 23555555555554333 456677899999999866555
Q ss_pred cccHHHHHHHHHHHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 239 IMNDETVHQLCKQAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~-AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
..|.++-.+-|...-+ +|||.|=-..= ..+..+=+.|-+.| +++|.+ +|=+|+.-.
T Consensus 89 ---~~s~~~a~~nA~r~~ke~gA~aVKlEGG--~~~~~~i~~L~~~g---IPV~gH---------------iGLtPQ~v~ 145 (268)
T COG0413 89 ---EVSPEQALKNAARLMKEAGADAVKLEGG--EEMAETIKRLTERG---IPVMGH---------------IGLTPQSVN 145 (268)
T ss_pred ---CCCHHHHHHHHHHHHHHhCCCEEEEcCC--HHHHHHHHHHHHcC---CceEEE---------------ecCChhhhh
Confidence 2345555666776666 99999975543 45666666787887 788888 566666311
Q ss_pred c-ccccccccCCCCC---HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEE
Q 014017 318 K-KTYVIRVIELYAN---YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 318 R-ktYQmd~~~~p~N---~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaa 375 (432)
. -.|..- =++ .++-++++..=++-||-+|...=- .-++-++|.++..+|+..
T Consensus 146 ~~GGykvq----Gr~~~~a~~l~~dA~ale~AGaf~ivlE~V--p~~lA~~IT~~lsiPtIG 201 (268)
T COG0413 146 WLGGYKVQ----GRTEESAEKLLEDAKALEEAGAFALVLECV--PAELAKEITEKLSIPTIG 201 (268)
T ss_pred ccCCeeee----cCCHHHHHHHHHHHHHHHhcCceEEEEecc--HHHHHHHHHhcCCCCEEe
Confidence 1 134443 222 223334444445678988887633 568889999999999865
No 449
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=30.09 E-value=3.4e+02 Score=26.85 Aligned_cols=88 Identities=24% Similarity=0.366 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCchhH-------HHHHHHhhCCCCeEEEEechhhHHHHHHHHC--C--Cchh--
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPYLD-------VIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--MIDE-- 396 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~YLD-------II~~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~id~-- 396 (432)
.|..+++..+..-+++|||||=|=-+..-.| ++..+++.+++|+..= |-....+++|.+. | +++-
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~~~~~~~~ee~~r~v~~i~~~~~~piSID--T~~~~v~e~aL~~~~G~~iINsIs 100 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVDYGGLDGVSAMKWLLNLLATEPTVPLMLD--STNWEVIEAGLKCCQGKCVVNSIN 100 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCcEEee--CCcHHHHHHHHhhCCCCcEEEeCC
Confidence 4668899999999999999998754332222 2222445568887543 2344556666654 3 2221
Q ss_pred -h---HHHHHHHHHHHHcCccEeehhc
Q 014017 397 -Q---RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 397 -~---~~~~EsL~~ikRAGAd~IiTYf 419 (432)
. +-+-+.+.-+++.|+.+|+..+
T Consensus 101 ~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 101 LEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred CCCCccccHHHHHHHHHhCCCEEEecc
Confidence 1 1122333447899999999876
No 450
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=29.92 E-value=55 Score=37.53 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=35.5
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCee---cCCCCCCchHHHHHHHHHHCCCccceeec
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVV---SPSDMMDGRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiV---APSDMMDGrV~aIR~aLD~~Gf~~v~ImS 292 (432)
-|-++|| +|....++||||+| .|+.-=---++.||+.|.+.|+ ++++++
T Consensus 107 ~D~eatv----~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~-~iPLVA 158 (733)
T PLN02925 107 KDVEATV----DQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY-NIPLVA 158 (733)
T ss_pred ccHHHHH----HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 3445555 56678899999998 2332222457889999999998 699986
No 451
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=29.91 E-value=1.9e+02 Score=27.98 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=40.3
Q ss_pred ccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE
Q 014017 298 ASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY 376 (432)
.+.||..+.+.+...-. +..|++-+..-..+..+-......=+.+++|-|++-|...--++++.+++..++|+..+
T Consensus 70 ~~~~~~~~~~gi~~~~~---~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~ 145 (341)
T PRK10703 70 EAPYFAEIIEAVEKNCY---QKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVM 145 (341)
T ss_pred CCchHHHHHHHHHHHHH---HCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEE
Confidence 34566666555544322 22466542211222222111111114579999999887545567788876456777664
No 452
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=29.85 E-value=1.3e+02 Score=30.51 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=26.5
Q ss_pred hhcCCcEEEEcCC--------CchhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVKPG--------LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPa--------l~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+|.|.|=+. .+.+|.|+++|+.+++||.+
T Consensus 159 e~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~ 199 (321)
T PRK10415 159 EDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIA 199 (321)
T ss_pred HHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEE
Confidence 3678999976542 25689999999999999886
No 453
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=29.79 E-value=3e+02 Score=28.11 Aligned_cols=130 Identities=18% Similarity=0.182 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHcCCCeecCCCCCCc------hHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc
Q 014017 245 VHQLCKQAVSQARAGADVVSPSDMMDG------RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (432)
Q Consensus 245 l~~Lak~Avs~A~AGADiVAPSDMMDG------rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR 318 (432)
.+.+...+-.+++.|.--+.|.-.-+. .+.++|++.++.. -..|. ..-+.|||=... +
T Consensus 71 ~e~~~~~~~~~~~~GvTtv~~t~~t~~~~~~~~~l~~~~~~~~~~~--g~~~~------g~hleGP~~~~~--------~ 134 (374)
T cd00854 71 AEALKTIAEALAKHGTTSFLPTTVTAPPEEIAKALAAIAEAIAEGQ--GAEIL------GIHLEGPFISPE--------K 134 (374)
T ss_pred HHHHHHHHHHHHccCcceeeccccCCCHHHHHHHHHHHHHHhhcCC--CCeeE------EEeeecCccCcc--------c
Confidence 455555666788889988877553332 2345555543320 01121 124678886432 2
Q ss_pred ccccc-cccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCC
Q 014017 319 KTYVI-RVIELYANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 319 ktYQm-d~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
+..+- ..+ .+.+. |.+++....-...-=++.+.|.++ ...+|..+++ .+++++.=|+.-.|..++.|.++|.
T Consensus 135 ~g~h~~~~~-~~~~~-~~~~~~~~~~~~~ik~~tlaPE~~~~~~~i~~~~~-~gi~v~~GH~~a~~~~~~~a~~~G~ 208 (374)
T cd00854 135 KGAHPPEYL-RAPDP-EELKKWLEAAGGLIKLVTLAPELDGALELIRYLVE-RGIIVSIGHSDATYEQAVAAFEAGA 208 (374)
T ss_pred CCCCCHHHc-CCcCH-HHHHHHHHhcCCCEEEEEECCCCCChHHHHHHHHH-CCeEEEeeCCcCCHHHHHHHHHcCC
Confidence 22211 000 02344 334444432222233566788864 3789999866 6899998899888999999999886
No 454
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=29.79 E-value=45 Score=23.42 Aligned_cols=18 Identities=33% Similarity=0.290 Sum_probs=13.3
Q ss_pred HHHHHHHHcCccEeehhc
Q 014017 402 ESLMCLRRAGADIILTYF 419 (432)
Q Consensus 402 EsL~~ikRAGAd~IiTYf 419 (432)
++...+.++|+|.|+|-+
T Consensus 11 ~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 11 ASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHcCCCEeeCCC
Confidence 566778889999999965
No 455
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.68 E-value=86 Score=32.75 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=40.3
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHc 230 (432)
.|.+++ .+++.++++.+.|+..|.| +|..|.. +|. -+.+-++.||+.+|+. +..-|+|+
T Consensus 192 ~r~~~~-~l~~~~~~~~~~Gad~I~l--------~DT~G~a--~P~-~v~~lv~~l~~~~~~~---------~i~~H~Hn 250 (347)
T PLN02746 192 GPVPPS-KVAYVAKELYDMGCYEISL--------GDTIGVG--TPG-TVVPMLEAVMAVVPVD---------KLAVHFHD 250 (347)
T ss_pred CCCCHH-HHHHHHHHHHHcCCCEEEe--------cCCcCCc--CHH-HHHHHHHHHHHhCCCC---------eEEEEECC
Confidence 334443 3666666666666665443 2222221 111 1335666667777642 22346665
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
-. | .=..-++.-.+||||+|--|
T Consensus 251 d~----G---------lA~AN~lAA~~aGa~~vd~s 273 (347)
T PLN02746 251 TY----G---------QALANILVSLQMGISTVDSS 273 (347)
T ss_pred CC----C---------hHHHHHHHHHHhCCCEEEEe
Confidence 22 1 11112555678999977444
No 456
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=29.66 E-value=94 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=38.2
Q ss_pred hcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHH-cCccEeehh
Q 014017 344 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR-AGADIILTY 418 (432)
Q Consensus 344 ~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikR-AGAd~IiTY 418 (432)
..|+|.+.+--...--++++++++. +++|.+|.| |..+ .+..+.+ .|.| |||=
T Consensus 203 ~~~~~~v~~~~~~~~~~~v~~~~~~-G~~v~vWTV----------------n~~~----~~~~l~~~~GVd-iiTD 256 (258)
T cd08573 203 FLGVSALLIHKDDISSAYVRYWRAR-GIRVIAWTV----------------NTPT----EKQYFAKTLNVP-YITD 256 (258)
T ss_pred hcCeeEEEechHhcCHHHHHHHHHC-CCEEEEEec----------------CCHH----HHHHHHHHhCCC-eecC
Confidence 4599998877666666788888775 999999999 3321 2334555 6999 8883
No 457
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=29.63 E-value=5.3e+02 Score=25.95 Aligned_cols=119 Identities=12% Similarity=0.198 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC--------
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG-------- 228 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshG-------- 228 (432)
+++.++++++++.|.+.+-+- +.. + .-.+-++++++.+|++.++.|.+ +.||...
T Consensus 134 ~~~~~~a~~~~~~Gf~~~KiK--v~~-----------~---~d~~~v~~vr~~~~~~~l~vDaN-~~~~~~~a~~~~~l~ 196 (324)
T TIGR01928 134 EQMLKQIESLKATGYKRIKLK--ITP-----------Q---IMHQLVKLRRLRFPQIPLVIDAN-ESYDLQDFPRLKELD 196 (324)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--eCC-----------c---hhHHHHHHHHHhCCCCcEEEECC-CCCCHHHHHHHHHHh
Confidence 358899999999999998883 221 0 01367899999999999999997 6676432
Q ss_pred ccee--ecCCCccccHHHHHHHHH-----------------HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccce
Q 014017 229 HDGI--VREDGVIMNDETVHQLCK-----------------QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVS 289 (432)
Q Consensus 229 HcGI--l~~~g~IdND~Tl~~Lak-----------------~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ 289 (432)
+.++ +.+.=.-++-+.+..|.+ ..--..+.++|++-|-=|--|-|...|+..+.+--.++.
T Consensus 197 ~~~~~~iEeP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~ 276 (324)
T TIGR01928 197 RYQLLYIEEPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAK 276 (324)
T ss_pred hCCCcEEECCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCe
Confidence 1122 111001123334444433 223334557999999888889888777766544333455
Q ss_pred eec
Q 014017 290 IMS 292 (432)
Q Consensus 290 ImS 292 (432)
+|-
T Consensus 277 ~~~ 279 (324)
T TIGR01928 277 VWI 279 (324)
T ss_pred EEE
Confidence 543
No 458
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=29.56 E-value=2.1e+02 Score=29.49 Aligned_cols=195 Identities=25% Similarity=0.312 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
.+.++.+.+.|+..|-+|-... +...+.+.|+.+|+.-.++.+. + -.+|.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~-------------e~d~~~~~i~~ak~~G~~v~~~----l--~~s~~----------- 139 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCT-------------EADVSEQHIGMARELGMDTVGF----L--MMSHM----------- 139 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccc-------------hHHHHHHHHHHHHHcCCeEEEE----E--EcccC-----------
Confidence 4678999999999988864311 1124678999999886543321 1 11221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH---CCC--ccceeecchhhhccccchhhh
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA---EGF--QHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~---~Gf--~~v~ImSYSaKyASsfYGPFR 306 (432)
.|.+.|++++-...++|||+|.=.|+.= -+|.++|+.|+. -|| +|..=|+++.-.+.---|--|
T Consensus 140 ---~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~ 216 (333)
T TIGR03217 140 ---TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATR 216 (333)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCE
Confidence 2346777788778889999998888653 467888888862 244 455556665544443333222
Q ss_pred hhhhCCCC-CCCcccccccccCCCCCHH-HHHHHHHhc--hhcCCcEEEEcCCCchhHHHHHHHhhC-CCC----eEEEE
Q 014017 307 EALDSNPR-FGDKKTYVIRVIELYANYR-EALVEAQAD--ESEGADILLVKPGLPYLDVIRLLRDKY-PLP----IAAYQ 377 (432)
Q Consensus 307 dAa~Sap~-~gDRktYQmd~~~~p~N~~-EAlre~~~D--i~EGAD~lMVKPal~YLDII~~vk~~~-~lP----vaaYq 377 (432)
++++-. +|-+ .+|.. |.+...... ++-|-|+-.+... .=|+|+.+.++. .++ .-.|
T Consensus 217 --iD~Sl~G~G~~----------aGN~~~E~lv~~l~~~g~~tgidl~~l~~~--a~~~v~p~~~~~~~~~~~~~~~Gy- 281 (333)
T TIGR03217 217 --IDASLRGLGAG----------AGNAPLEVFVAVLDRLGWNTGCDLFKLMDA--AEDIVRPLMDRPVRVDRETLTLGY- 281 (333)
T ss_pred --EEeeccccccc----------ccCccHHHHHHHHHhcCCCCCcCHHHHHHH--HHHHHHhhccCCCcCChHHHHhhh-
Confidence 333332 3432 33333 544443321 3333332111000 112333333321 000 1245
Q ss_pred echhhHH----HHHHHHCCCchhhHHHHHH
Q 014017 378 VSGEYSM----IKAGGALKMIDEQRVMMES 403 (432)
Q Consensus 378 VSGEYaM----ikaAa~~G~id~~~~~~Es 403 (432)
+|-|+- .+.++++.-+|.+++++|.
T Consensus 282 -ag~~s~~~~~~~~~~~~~~~~~~~i~~~~ 310 (333)
T TIGR03217 282 -AGVYSSFLLHAERAAAKYGVDARDILVEL 310 (333)
T ss_pred -hhhhhhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 788875 3446666667998888885
No 459
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=29.55 E-value=1.5e+02 Score=31.51 Aligned_cols=62 Identities=27% Similarity=0.326 Sum_probs=43.4
Q ss_pred HHHHHHHhchhcCCcEEEEcCCCc----hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHH
Q 014017 334 EALVEAQADESEGADILLVKPGLP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVKPal~----YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ik 408 (432)
+.+.++..=++-|+|+|.|=-+.. -+|.|+.+|++| ++||.+=+| .+ .|....+.
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v---------------~t-----~~~a~~l~ 283 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV---------------AT-----AEQAKALI 283 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC---------------CC-----HHHHHHHH
Confidence 445555544667999999977543 488999999997 699998333 23 23334556
Q ss_pred HcCccEe
Q 014017 409 RAGADII 415 (432)
Q Consensus 409 RAGAd~I 415 (432)
.||||.|
T Consensus 284 ~aGad~i 290 (450)
T TIGR01302 284 DAGADGL 290 (450)
T ss_pred HhCCCEE
Confidence 6899999
No 460
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=29.55 E-value=1.4e+02 Score=31.17 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=31.9
Q ss_pred chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 357 PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 357 ~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+.+|++.+|+..++||.+= .+- |... +.|....+..+|||.|+
T Consensus 155 ~~~~i~~~v~~~~~~Pv~vK-l~p--------------~~~~-~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 155 LVEMYTRWVKRGSRLPVIVK-LTP--------------NITD-IREPARAAKRGGADAVS 198 (420)
T ss_pred HHHHHHHHHHhccCCcEEEE-cCC--------------Cccc-HHHHHHHHHHCCCCEEE
Confidence 46899999999999998752 221 2222 45666778899999987
No 461
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.47 E-value=47 Score=33.21 Aligned_cols=77 Identities=19% Similarity=0.272 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCeEEE---eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSVVL---FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L---Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~ 234 (432)
.+.+.++++.++|...|=+ |-.+|. .--++.|+.+|+. .+.|++-|- .
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~l~~--------------~~r~~~I~~~~~~--Gf~v~~EvG-------------~ 135 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTIDLPE--------------EERLRLIRKAKEE--GFKVLSEVG-------------K 135 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS---H--------------HHHHHHHHHHCCT--TSEEEEEES--------------
T ss_pred hHHHHHHHHHHcCCCEEEecCCceeCCH--------------HHHHHHHHHHHHC--CCEEeeccc-------------C
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
++..-+-..|++.+.+++...-+||||.|
T Consensus 136 K~~~~~~~~~~~~~i~~~~~dLeAGA~~V 164 (244)
T PF02679_consen 136 KDPESDFSLDPEELIEQAKRDLEAGADKV 164 (244)
T ss_dssp SSHHHHTT--CCHHHHHHHHHHHHTECEE
T ss_pred CCchhcccCCHHHHHHHHHHHHHCCCCEE
No 462
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=29.37 E-value=3.3e+02 Score=28.43 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YT 225 (432)
+..+-.+.+.+.|...|-|.+- ..+.-+|+.|..--|---++.+.|+.||+++ ||..|..=+. +|.
T Consensus 145 ~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis--~~~ 222 (361)
T cd04747 145 AFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFS--QWK 222 (361)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEC--ccc
Confidence 3555566788899999988531 2345678888877777788889999999998 5776665444 443
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
. .+. ..+.| .+-+++ .+.+-.+.++|+|+|--|.
T Consensus 223 ~-~~~--~~~~g-~~~~e~----~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 223 Q-QDY--TARLA-DTPDEL----EALLAPLVDAGVDIFHCST 256 (361)
T ss_pred c-ccc--ccCCC-CCHHHH----HHHHHHHHHcCCCEEEecC
Confidence 2 111 11112 233443 3333334678999986654
No 463
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=29.36 E-value=5.5e+02 Score=25.09 Aligned_cols=176 Identities=19% Similarity=0.214 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCC-------------chHHHHHHHHHHC-CCccceeecchhhhcc---ccchhhh
Q 014017 244 TVHQLCKQAVSQARAGADVVSPSDMMD-------------GRVGAIRAALDAE-GFQHVSIMSYTAKYAS---SFYGPFR 306 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPSDMMD-------------GrV~aIR~aLD~~-Gf~~v~ImSYSaKyAS---sfYGPFR 306 (432)
+.+.+.++|..+.++|||+|==-.... -|+.-+=+.|.+. +. -++|=||..+-+- ..| +
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g---~ 97 (258)
T cd00423 22 SLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAG---A 97 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhC---C
Confidence 557788899999999999983222111 1333322333333 43 4788888766332 233 4
Q ss_pred hhhhCCCCCCC-c------ccccccccCCCCCH--------------H----HHHHHHHh-chhcC--CcEEEEcCCCch
Q 014017 307 EALDSNPRFGD-K------KTYVIRVIELYANY--------------R----EALVEAQA-DESEG--ADILLVKPGLPY 358 (432)
Q Consensus 307 dAa~Sap~~gD-R------ktYQmd~~~~p~N~--------------~----EAlre~~~-Di~EG--AD~lMVKPal~Y 358 (432)
+.+.|.-.+.+ . +.|...+|.++.+. - +-+.+... =.+.| -+=|++=|+.-+
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~ 177 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGF 177 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCc
Confidence 44555433321 1 23555555555321 1 22222111 12456 445778888776
Q ss_pred -------hHHHHHHHh--hC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHH
Q 014017 359 -------LDVIRLLRD--KY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAAR 425 (432)
Q Consensus 359 -------LDII~~vk~--~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~ 425 (432)
+.+++.++. .+ ++|+.. -+|-- +++..+...+.-+......-.+....-.|+|++++.-.++..+
T Consensus 178 ~k~~~~~~~~l~~i~~~~~~~g~Pil~-G~Snk-sf~~~~~~~~~~~R~~~t~a~~~~a~~~G~~~~rvh~v~~~~~ 252 (258)
T cd00423 178 GKTEEHNLELLRRLDAFRELPGLPLLL-GVSRK-SFLGDLLSVGPKDRLAGTAAFLAAAILNGADIVRVHDVKELRD 252 (258)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCcEEE-Eeccc-hhhcccCCCChHHhhHHHHHHHHHHHHcCCCEEEECCCHHHHH
Confidence 367776664 23 677532 22221 3333222222111111222222333457999999988665544
No 464
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.31 E-value=4.2e+02 Score=28.48 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccC----CCCCCcce
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDP----YSSDGHDG 231 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit-DVcLc~----YTshGHcG 231 (432)
.+..++++.+++.|+.-|.|= ... -..--+...|+.||++||++.||+ ||+-=+ --..|-|+
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD----~a~---------g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~ 218 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVID----SAH---------GHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADC 218 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEE----CCC---------CCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCE
Confidence 346799999999999988771 111 112346689999999999986644 654111 11346666
Q ss_pred eecC--CCc------ccc--HHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCcccee
Q 014017 232 IVRE--DGV------IMN--DETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSI 290 (432)
Q Consensus 232 Il~~--~g~------IdN--D~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~I 290 (432)
|.-. .|. ++. ..++..+...+-...+.|..|||=..+..+ +-|.++| ..|-.-|.|
T Consensus 219 I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~--~Di~KAL-alGA~aVmv 284 (404)
T PRK06843 219 LKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFS--GDVVKAI-AAGADSVMI 284 (404)
T ss_pred EEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCH--HHHHHHH-HcCCCEEEE
Confidence 5321 111 111 123333333333223557777764444333 5777888 477644443
No 465
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=29.19 E-value=3.2e+02 Score=26.62 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
++.+.++.+.+.|+..|-| ++ -|... .+....+....+.+.++.+|+.+ ++-|+.-+..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~-cP~~~---~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLS-CPNVG---GGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSP--------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcC-CCCCC---CCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCC---------------
Confidence 5778888888889999988 44 24321 12223333456677888888876 4444444331
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM 269 (432)
.++ .+.+.++|-...++|||.|.-+...
T Consensus 172 -~~~----~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 172 -YFD----LEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred -CCC----HHHHHHHHHHHHHcCCCEEEEEccc
Confidence 112 2234444555678999999876543
No 466
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=29.18 E-value=1.4e+02 Score=31.07 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHcCCCeE---EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSV---VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv---~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~ 234 (432)
++.+.++.+.+.|+..| ++|| +|....+ -+.+.++.+.+--|+-+-+.-..+-|-|.-.+. +
T Consensus 152 ~~~~ai~~l~~~G~~~v~~dlI~G-lPgqt~e-----------~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~--~- 216 (400)
T PRK07379 152 DIFAAVDLIHQAGIENFSLDLISG-LPHQTLE-----------DWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQ--Y- 216 (400)
T ss_pred HHHHHHHHHHHcCCCeEEEEeecC-CCCCCHH-----------HHHHHHHHHHcCCCCEEEEecceecCCchhHHH--h-
Confidence 47778888999999854 5688 4643211 245677877776677555544444444433221 1
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCC-CCCCchHHHHHHHHHHCCCccceeecchh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPS-DMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS-DMMDGrV~aIR~aLD~~Gf~~v~ImSYSa 295 (432)
..|.. ..|+ |..--....+++.|.++||.+..|-.||-
T Consensus 217 ~~g~~-----------------------~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~ 255 (400)
T PRK07379 217 QPGKA-----------------------PLPSDETTAAMYRLAQEILTQAGYEHYEISNYAK 255 (400)
T ss_pred hcCCC-----------------------CCCCHHHHHHHHHHHHHHHHHcCCceeeeeheEC
Confidence 11211 1111 11112344678889999999999999873
No 467
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.17 E-value=2e+02 Score=31.37 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd-l~IitDVcLc~YTshGHcGIl~~~ 236 (432)
+..+.++.|++.|+..+.+ .. . -..+..+.++|+.||+.||+ +.|++
T Consensus 242 ~~~~ra~~Lv~aGvd~i~v-d~-a-----------~g~~~~~~~~i~~ir~~~~~~~~V~a------------------- 289 (502)
T PRK07107 242 DYAERVPALVEAGADVLCI-DS-S-----------EGYSEWQKRTLDWIREKYGDSVKVGA------------------- 289 (502)
T ss_pred hHHHHHHHHHHhCCCeEee-cC-c-----------ccccHHHHHHHHHHHHhCCCCceEEe-------------------
Confidence 3567788888888887664 21 1 12223346788888888884 65552
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
|.|..- ++|....+||||.|
T Consensus 290 GnV~t~-------e~a~~li~aGAd~I 309 (502)
T PRK07107 290 GNVVDR-------EGFRYLAEAGADFV 309 (502)
T ss_pred ccccCH-------HHHHHHHHcCCCEE
Confidence 444332 34445557999997
No 468
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=29.15 E-value=2.7e+02 Score=24.81 Aligned_cols=64 Identities=22% Similarity=0.196 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..+..+++.... .+..|++++- |.+.-+|++..++....+|+....-.++......+...|+.|
T Consensus 40 ~~~~~~~~~~~~---~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~~~~~~~~~~~~~~~ga~~ 106 (240)
T PRK10710 40 LSHGDEVLPYVR---QTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADD 106 (240)
T ss_pred eCCHHHHHHHHh---hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEEcCCCHHHHHHHHhcCCCe
Confidence 346667766553 3558999986 455668999999876679999887767777777777888654
No 469
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=29.10 E-value=80 Score=31.47 Aligned_cols=70 Identities=26% Similarity=0.378 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHCCC-eEEEeeecccCCCCCCc----ceeecCCCccccHHHHHHHH--------HHHHHHHHcCCCeec
Q 014017 198 LVPRTIWLLKDRYPD-LVIYTDVALDPYSSDGH----DGIVREDGVIMNDETVHQLC--------KQAVSQARAGADVVS 264 (432)
Q Consensus 198 ~v~raIr~iK~~fPd-l~IitDVcLc~YTshGH----cGIl~~~g~IdND~Tl~~La--------k~Avs~A~AGADiVA 264 (432)
.+-+||+.+|+++++ +-|+. .+-.|||.-++ -.++. .-..|-+.++.|. +-+..+.++|||+|.
T Consensus 113 ~v~eai~~l~~~~~~~~pvig-~~~gP~Tla~~l~g~~~~~~--~~~~~pe~~~~ll~~it~~~~~~~~~~~eaGad~i~ 189 (326)
T cd03307 113 TVLEAIKILKEKYGEEVPVIG-GMTGPASLASHLAGVENFLK--WLIKKPEKVREFLEFLTEACIEYAKAQLEAGADIIT 189 (326)
T ss_pred HHHHHHHHHHHHcCCcceeeC-CCCCHHHHHHHHHhHHHHHH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 356899999999984 55553 34678875443 11111 1123444444433 344457788999997
Q ss_pred CCCCCC
Q 014017 265 PSDMMD 270 (432)
Q Consensus 265 PSDMMD 270 (432)
-+|..=
T Consensus 190 i~d~~a 195 (326)
T cd03307 190 IADPTA 195 (326)
T ss_pred ecCCCc
Confidence 777553
No 470
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=29.10 E-value=1.6e+02 Score=31.26 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC---------------------HHHHHHHHHHHCCCeEE
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---------------------VPRTIWLLKDRYPDLVI 215 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~---------------------v~raIr~iK~~fPdl~I 215 (432)
.++.+.++-+.++|+++|-|=|+... .+...+..|++... +.+.|.+++++ .|-|
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~--~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~--Gi~v 97 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKG--TSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHEN--GIKV 97 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccC--CCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHC--CCEE
Confidence 36999999999999999999775321 22223455554443 34555566555 7999
Q ss_pred EeeecccCC
Q 014017 216 YTDVALDPY 224 (432)
Q Consensus 216 itDVcLc~Y 224 (432)
|.|+.+-+-
T Consensus 98 i~D~V~NH~ 106 (479)
T PRK09441 98 YADVVLNHK 106 (479)
T ss_pred EEEECcccc
Confidence 999986543
No 471
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=28.96 E-value=1.5e+02 Score=28.15 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.+...++.+.+.|.++|.+.-.+.. +.+++.|.++||++-|+| .++|+-
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~ll~~-----------------~~gl~~l~~~~p~v~i~~-~~id~~ 185 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSIVAA-----------------PEGIEAVEKAHPDVDIYT-AAIDEK 185 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecC-----------------HHHHHHHHHHCCCCEEEE-EEECCC
Confidence 4788899999999999877554321 368899999999988884 446663
No 472
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=28.90 E-value=1.7e+02 Score=32.83 Aligned_cols=95 Identities=17% Similarity=0.351 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCC--CCC--HHHHHHHHHHHCCCeEEEeeecccCCCCCCccee
Q 014017 158 GLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYND--NGL--VPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI 232 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~--~g~--v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGI 232 (432)
.+-+.++.+.+.||++|+- =|- |+. |++-|.+ .|+ .-.-+|-||++|.|-. .+|+--| -.|||-+
T Consensus 93 ~Id~aLe~a~~~GirNILALRGD-pP~-----g~d~~~~~e~gF~yA~DLVr~Irs~YGDyF---~IgVAgY-PEghpe~ 162 (590)
T KOG0564|consen 93 MIDKALEQAKALGIRNILALRGD-PPI-----GQDKWVEEEGGFRYAVDLVRYIRSKYGDYF---CIGVAGY-PEGHPEA 162 (590)
T ss_pred HHHHHHHHHHHhCchhhhhhcCC-CCC-----CccccccccCCchhHHHHHHHHHHHhCCeE---EEEeccC-CCCCcCC
Confidence 4677888999999999874 453 332 2222321 232 3467899999999854 3467788 6899985
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD 270 (432)
-.. |-+..|..|-+- -+||||.|-.-=.-|
T Consensus 163 ~~~----~~~~Dl~yLk~K----vdaGaDFIiTQlFYd 192 (590)
T KOG0564|consen 163 PSH----DYLADLPYLKEK----VDAGADFIITQLFYD 192 (590)
T ss_pred ccc----chhhhhHHHHHh----hcccchhhhhhhhcC
Confidence 432 245667776553 479999987764444
No 473
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=28.74 E-value=1.5e+02 Score=32.63 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=51.4
Q ss_pred HHHHHHHhchhcCCcEEEEcCCC--c----hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCC--ch-hhH-HHHHH
Q 014017 334 EALVEAQADESEGADILLVKPGL--P----YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM--ID-EQR-VMMES 403 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVKPal--~----YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~--id-~~~-~~~Es 403 (432)
+.+.++..=+++|||||=|==.. + =..+|+.+++.+++||..= |--...+++|.++|. |+ -.. -+-|.
T Consensus 166 ~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~~pISID--T~~~~v~eaAL~aGAdiINsVs~~~~d~~ 243 (499)
T TIGR00284 166 GIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALDSPVIAD--TPTLDELYEALKAGASGVIMPDVENAVEL 243 (499)
T ss_pred HHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCCCcEEEe--CCCHHHHHHHHHcCCCEEEECCccchhHH
Confidence 45666666689999999774322 2 4578888888888998643 334456677776662 21 111 12233
Q ss_pred HHHHHHcCccEeehh
Q 014017 404 LMCLRRAGADIILTY 418 (432)
Q Consensus 404 L~~ikRAGAd~IiTY 418 (432)
+.-+++.|+-+|+..
T Consensus 244 ~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 244 ASEKKLPEDAFVVVP 258 (499)
T ss_pred HHHHHHcCCeEEEEc
Confidence 344667788888843
No 474
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=28.73 E-value=1e+02 Score=29.94 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCc--h---hHHHHHHHhhC-CCCeE
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLP--Y---LDVIRLLRDKY-PLPIA 374 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~--Y---LDII~~vk~~~-~lPva 374 (432)
..|..||+.=+ ..+.+..|+ +|=|++ | +++|+++|+.| +.+|+
T Consensus 12 ~~~~~~A~~l~-~~l~~~v~~--iKVG~~L~~~~G~~~i~~lk~~~~~~~If 60 (218)
T PRK13305 12 HTSLEAAQRDV-TLLKDHVDI--VEAGTILCLNEGLGAVKALREQCPDKIIV 60 (218)
T ss_pred CCCHHHHHHHH-HHccccCCE--EEECHHHHHHhCHHHHHHHHHhCCCCEEE
Confidence 66888888744 457776677 565554 3 78999999987 45666
No 475
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=28.73 E-value=3.3e+02 Score=26.60 Aligned_cols=84 Identities=24% Similarity=0.270 Sum_probs=48.3
Q ss_pred HHHHHHHhchh-cCCc-EEEE---cCCC---------c---hhHHHHHHHhh----CCCCeEEEEechhhHHHHHHHHCC
Q 014017 334 EALVEAQADES-EGAD-ILLV---KPGL---------P---YLDVIRLLRDK----YPLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 334 EAlre~~~Di~-EGAD-~lMV---KPal---------~---YLDII~~vk~~----~~lPvaaYqVSGEYaMikaAa~~G 392 (432)
++|++..+... .|.+ +|.+ +|.. + -.|+|+.+++. +.+-+++|- .|.. .
T Consensus 73 ~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yP-e~hp---------~ 142 (274)
T cd00537 73 IELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYP-EGHP---------E 142 (274)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCC-CcCC---------C
Confidence 45555555544 4776 4444 3322 2 37888888853 556677775 1110 0
Q ss_pred CchhhHHHHHHHHHHHHcCccEeehhcH---HHHHHHHh
Q 014017 393 MIDEQRVMMESLMCLRRAGADIILTYFA---LQAARCLC 428 (432)
Q Consensus 393 ~id~~~~~~EsL~~ikRAGAd~IiTYfA---~~~a~wL~ 428 (432)
.-+ .+.-++.|..=..||||.|||=+- ..+.+|++
T Consensus 143 ~~~-~~~~~~~L~~Ki~aGA~f~iTQ~~fd~~~~~~~~~ 180 (274)
T cd00537 143 APS-LEEDIKRLKRKVDAGADFIITQLFFDNDAFLRFVD 180 (274)
T ss_pred CCC-HHHHHHHHHHHHHCCCCEEeecccccHHHHHHHHH
Confidence 111 234567777777889999999543 44556765
No 476
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=28.71 E-value=3.1e+02 Score=27.14 Aligned_cols=66 Identities=18% Similarity=0.318 Sum_probs=46.9
Q ss_pred hhcCCcEEEEcCCCch----------------------------hHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCC
Q 014017 343 ESEGADILLVKPGLPY----------------------------LDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y----------------------------LDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G 392 (432)
++-|+|.|=+.-+..| ++||+.+|+.+ ++||+. -+|.+... ..|
T Consensus 151 ~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~v-ris~~~~~-----~~g 224 (327)
T cd02803 151 KEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGV-RLSADDFV-----PGG 224 (327)
T ss_pred HHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEE-EechhccC-----CCC
Confidence 3469999999999777 59999999988 677764 45543211 123
Q ss_pred CchhhHHHHHHHHHHHHcCccEee
Q 014017 393 MIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 393 ~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.+ -..|.+..+..+|+|+|-
T Consensus 225 -~~~~-e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 225 -LTLE-EAIEIAKALEEAGVDALH 246 (327)
T ss_pred -CCHH-HHHHHHHHHHHcCCCEEE
Confidence 3443 457778888889999984
No 477
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=28.53 E-value=76 Score=32.86 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHcCCCeecC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
.|+=-=..||+.-|+|||++|+|
T Consensus 153 ~TliFS~~Qa~aaa~AGa~~ISP 175 (317)
T TIGR00874 153 LTLLFSFVQAIACAEAKVTLISP 175 (317)
T ss_pred eeeecCHHHHHHHHHcCCCEEEe
Confidence 34444467999999999999999
No 478
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=28.52 E-value=67 Score=37.26 Aligned_cols=101 Identities=32% Similarity=0.513 Sum_probs=60.4
Q ss_pred HHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCch-----HHH
Q 014017 202 TIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGR-----VGA 275 (432)
Q Consensus 202 aIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGr-----V~a 275 (432)
-|..|+++||||-|- -|-||- .| .-| + .-+.-|+||||+|- --|.|.|. .+|
T Consensus 752 Li~alRdk~PdlPiH---------vHtHDt----sG-----agV---A-sMlaca~AGADVVDvA~dSMSGmTSQPSmgA 809 (1176)
T KOG0369|consen 752 LIGALRDKFPDLPIH---------VHTHDT----SG-----AGV---A-SMLACALAGADVVDVAVDSMSGMTSQPSMGA 809 (1176)
T ss_pred HHHHHHhhCCCCceE---------EeccCC----cc-----HHH---H-HHHHHHHcCCceeeeecccccccccCCchhh
Confidence 366788999997553 344432 12 111 1 22456899999983 34556653 577
Q ss_pred HHHHHHHCCCccce-----eecchhhhcc--ccchhhhhhhhCCCCCCCcccccccccCCCC
Q 014017 276 IRAALDAEGFQHVS-----IMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYVIRVIELYA 330 (432)
Q Consensus 276 IR~aLD~~Gf~~v~-----ImSYSaKyAS--sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~ 330 (432)
+=..|+-.-+ |+. |--|++-+++ -+|.||--+. +-+-||-.-||.. ||+
T Consensus 810 ~vAsl~Gt~~-Dt~l~~~~v~eysaYWe~~R~LYapFe~tt--tmksgn~dVY~hE---IPG 865 (1176)
T KOG0369|consen 810 LVASLQGTPL-DTGLNLEHVREYSAYWEQMRLLYAPFECTT--TMKSGNSDVYQHE---IPG 865 (1176)
T ss_pred hhhhccCCcc-cCCCchHHHHHHHHHHHHHhhhhchhhhcc--cccCCCcchhhcc---CCC
Confidence 7777755322 222 4567775555 6899997643 2233677788874 564
No 479
>PRK08999 hypothetical protein; Provisional
Probab=28.42 E-value=2.3e+02 Score=27.94 Aligned_cols=63 Identities=29% Similarity=0.320 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcC--------CCch--hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhH
Q 014017 329 YANYREALVEAQADESEGADILLVKP--------GLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKP--------al~Y--LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~ 398 (432)
-.|.+|+. ++. ++|||.+.+=| +.+- +|.++.+++.+++||.| -|-|+.+
T Consensus 233 ~h~~~~~~-~a~---~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~A---------------iGGI~~~- 292 (312)
T PRK08999 233 CHDAEELA-RAQ---RLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYA---------------LGGLGPG- 292 (312)
T ss_pred cCCHHHHH-HHH---hcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHH-
Confidence 34566643 332 57999998744 4322 68899999999999987 4667654
Q ss_pred HHHHHHHHHHHcCccEe
Q 014017 399 VMMESLMCLRRAGADII 415 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~I 415 (432)
.+..++.+||+.|
T Consensus 293 ----~~~~~~~~g~~gv 305 (312)
T PRK08999 293 ----DLEEAREHGAQGI 305 (312)
T ss_pred ----HHHHHHHhCCCEE
Confidence 4456778899876
No 480
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=28.40 E-value=1.3e+02 Score=30.13 Aligned_cols=55 Identities=29% Similarity=0.431 Sum_probs=33.2
Q ss_pred hcCCcEEEEcCCCch----hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 344 SEGADILLVKPGLPY----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 344 ~EGAD~lMVKPal~Y----LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+-||+.|-|==...| ++-++.+++.+++|+-. +-||=.+--+.|+ +.+|||.|+-
T Consensus 79 ~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~---------------KDFIid~~QI~eA----~~~GADaVLL 137 (254)
T PF00218_consen 79 EAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLR---------------KDFIIDPYQIYEA----RAAGADAVLL 137 (254)
T ss_dssp HTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEE---------------ES---SHHHHHHH----HHTT-SEEEE
T ss_pred hcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCccc---------------ccCCCCHHHHHHH----HHcCCCEeeh
Confidence 356999877544433 88999999999999988 3343333334555 7789998753
No 481
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=28.24 E-value=63 Score=36.42 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=36.4
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee--cCCCCCC-chHHHHHHHHHHCCCccceeec
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVV--SPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiV--APSDMMD-GrV~aIR~aLD~~Gf~~v~ImS 292 (432)
.-|-++||+ |...+++||||+| +=-+|=| --++.||+.|.+.|+ ++++++
T Consensus 37 T~D~~atv~----Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~-~iPLVA 89 (611)
T PRK02048 37 TMDTEACVA----QAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGY-MVPLVA 89 (611)
T ss_pred cccHHHHHH----HHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC-CCCEEE
Confidence 345566654 5667899999998 3333333 447889999999998 699986
No 482
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=28.15 E-value=4.3e+02 Score=23.50 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh-CCCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..+++.... +...|++++- |.+.-+++++.+++. ..+|+....-...-.....+.+.|..|. .+
T Consensus 30 ~~~~~~~~~~~~---~~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 106 (227)
T PRK09836 30 ADNGLNGYHLAM---TGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFA 106 (227)
T ss_pred ECCHHHHHHHHh---hCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHH
Confidence 456677766543 3457899885 555668899999875 4699998876666667777788887542 23
Q ss_pred HHHHHHHHHHHcC
Q 014017 399 VMMESLMCLRRAG 411 (432)
Q Consensus 399 ~~~EsL~~ikRAG 411 (432)
.+.+.+..+.|-+
T Consensus 107 ~l~~~i~~~~~~~ 119 (227)
T PRK09836 107 ELLARVRTLLRRG 119 (227)
T ss_pred HHHHHHHHHHhcc
Confidence 4555555554433
No 483
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=28.10 E-value=87 Score=28.57 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=45.5
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhch-hcCCcEEEEcCCCc-hhHHHHHHHhhCCCCeE
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADE-SEGADILLVKPGLP-YLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di-~EGAD~lMVKPal~-YLDII~~vk~~~~lPva 374 (432)
..+.||..+.+.+..+-. +..|++.+.....+..+..+++...+ +.++|-|++-|... -.+.+..+++ .++|+.
T Consensus 9 ~~~~~~~~~~~gi~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~ipvv 84 (270)
T cd01545 9 PSPGYVSEIQLGALDACR---DTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDE-AGVPYV 84 (270)
T ss_pred CCcccHHHHHHHHHHHHH---hCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHh-cCCCEE
Confidence 456788888877766532 45688764433434333344444444 57899888877653 2455666654 556765
Q ss_pred EE
Q 014017 375 AY 376 (432)
Q Consensus 375 aY 376 (432)
..
T Consensus 85 ~i 86 (270)
T cd01545 85 RI 86 (270)
T ss_pred EE
Confidence 44
No 484
>PRK00077 eno enolase; Provisional
Probab=28.07 E-value=2.8e+02 Score=29.46 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=76.7
Q ss_pred chHHHHHHHHHHCCCc---cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf~---~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
=++.++|+++++.||+ ++.||==++ +|.||. ...|..+- . --+.+|+++... ++.|--
T Consensus 217 e~l~~lreAi~~ag~~~G~di~l~lD~a--as~~~~--------------~~~y~~~~-~-~~s~~e~~~~~~-~l~e~y 277 (425)
T PRK00077 217 EALDLILEAIEKAGYKPGEDIALALDCA--ASEFYK--------------DGKYVLEG-E-GLTSEEMIDYLA-ELVDKY 277 (425)
T ss_pred HHHHHHHHHHHHhcCCCCCceEEEEehh--hhhccc--------------CCeeeccC-C-cCCHHHHHHHHH-HHHhhC
Confidence 4688999999999884 577775443 577882 11243320 0 013455554433 334446
Q ss_pred cEEEEc-CCCc-hhHHHHHHHhhC--CCCeEEEEec-hhhHHHHHHHHCCCchhh-----H--HHHHHHHH---HHHcCc
Q 014017 348 DILLVK-PGLP-YLDVIRLLRDKY--PLPIAAYQVS-GEYSMIKAGGALKMIDEQ-----R--VMMESLMC---LRRAGA 412 (432)
Q Consensus 348 D~lMVK-Pal~-YLDII~~vk~~~--~lPvaaYqVS-GEYaMikaAa~~G~id~~-----~--~~~EsL~~---ikRAGA 412 (432)
++..+. |=-+ -+|=.++++++. ++||++-..+ -...-++.+.+.|+.|-= + -+.|++.. .+.+|-
T Consensus 278 ~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi 357 (425)
T PRK00077 278 PIVSIEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGY 357 (425)
T ss_pred CcEEEEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCC
Confidence 677766 5432 256788899988 6999887743 235666666777776641 1 14555544 455677
Q ss_pred cEeehh
Q 014017 413 DIILTY 418 (432)
Q Consensus 413 d~IiTY 418 (432)
..+++.
T Consensus 358 ~~~vsh 363 (425)
T PRK00077 358 TAVVSH 363 (425)
T ss_pred eEEEeC
Confidence 766643
No 485
>PRK04296 thymidine kinase; Provisional
Probab=27.86 E-value=1.9e+02 Score=26.70 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=52.7
Q ss_pred HHHHHHHhchhcCCcEEEEcCC--CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHH-C-----------CCchhhHH
Q 014017 334 EALVEAQADESEGADILLVKPG--LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA-L-----------KMIDEQRV 399 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVKPa--l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~-~-----------G~id~~~~ 399 (432)
++++-+.+=...|=-.+++||+ ..|. ...+.++.++++-++.+.-.-.+.+...+ . +++++++
T Consensus 18 ~~l~~~~~~~~~g~~v~i~k~~~d~~~~--~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviIDEaq~l~~~~- 94 (190)
T PRK04296 18 ELLQRAYNYEERGMKVLVFKPAIDDRYG--EGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLIDEAQFLDKEQ- 94 (190)
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccc--CCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEEEccccCCHHH-
Confidence 5666665555678889999995 3333 33445666677766666555555444322 1 3343333
Q ss_pred HHHHHHHHHHcCccEeehhcH
Q 014017 400 MMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 400 ~~EsL~~ikRAGAd~IiTYfA 420 (432)
+.|.+..++..|..+|+|--.
T Consensus 95 v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 95 VVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred HHHHHHHHHHcCCeEEEEecC
Confidence 567777779999999998654
No 486
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=27.81 E-value=3.1e+02 Score=26.61 Aligned_cols=68 Identities=21% Similarity=0.152 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcC-CCch----hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHH
Q 014017 331 NYREALVEAQADESEGADILLVKP-GLPY----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLM 405 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKP-al~Y----LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~ 405 (432)
+.+|+..-+..=...|+++|-+.= ..++ .|+|+++|+.+++|+.. -|-|... |...
T Consensus 132 ~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~Pv~v---------------GGGIrs~----e~a~ 192 (205)
T TIGR01769 132 KPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIPLIV---------------GGGIRSP----EIAY 192 (205)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCCEEE---------------eCCCCCH----HHHH
Confidence 345544444433488999998876 3344 89999999999999864 2334433 3444
Q ss_pred HHHHcCccEeeh
Q 014017 406 CLRRAGADIILT 417 (432)
Q Consensus 406 ~ikRAGAd~IiT 417 (432)
.+.++|||.||+
T Consensus 193 ~l~~~GAD~VVV 204 (205)
T TIGR01769 193 EIVLAGADAIVT 204 (205)
T ss_pred HHHHcCCCEEEe
Confidence 567889999884
No 487
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=27.76 E-value=2.8e+02 Score=26.98 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP--dl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
+..+++++++.|...|.+--.+. + .+++..+ +-++.|++... ++.++.+ .|....|.|-+
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g----~------~~~~~~~-~~~~~i~~~~~~~g~~liv~----~~~~Gvh~~~~--- 153 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVG----S------DTEWEQI-RDLGMIAEICDDWGVPLLAM----MYPRGPHIDDR--- 153 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecC----C------chHHHHH-HHHHHHHHHHHHcCCCEEEE----EeccCcccccc---
Confidence 56789999999999888733211 1 1112233 34555554331 2223322 23333454431
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHH
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~ 282 (432)
.++++..+++ ..+++|||+|..+- -|-+..+|+....
T Consensus 154 ----~~~~~~~~~~---~a~~~GADyikt~~--~~~~~~l~~~~~~ 190 (258)
T TIGR01949 154 ----DPELVAHAAR---LGAELGADIVKTPY--TGDIDSFRDVVKG 190 (258)
T ss_pred ----cHHHHHHHHH---HHHHHCCCEEeccC--CCCHHHHHHHHHh
Confidence 2344444444 44579999999873 3557777777654
No 488
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=27.65 E-value=1.3e+02 Score=25.95 Aligned_cols=58 Identities=19% Similarity=0.428 Sum_probs=43.2
Q ss_pred hcCCcEEEEcCCCchhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc
Q 014017 344 SEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 344 ~EGAD~lMVKPal~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd 413 (432)
.+.+|++++=|-..| -+.++++... .||..=.- ..=|++|.++++-..+..++.||+.
T Consensus 48 ~~~~DviLl~Pqi~~--~~~~i~~~~~~~pV~~I~~----------~~Yg~~dg~~vl~~a~~~~~~~~~~ 106 (106)
T PRK10499 48 GQNADVVLLGPQIAY--MLPEIQRLLPNKPVEVIDS----------LLYGKVDGLGVLKAAVAAIKKAAAN 106 (106)
T ss_pred ccCCCEEEECHHHHH--HHHHHHhhcCCCCEEEECh----------HhhhcCCHHHHHHHHHHHHHHhccC
Confidence 456799999999888 5666666553 67776332 3346789999999999999999874
No 489
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=27.53 E-value=2.1e+02 Score=27.15 Aligned_cols=78 Identities=6% Similarity=0.012 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEE---Ec---CCCchhHHHHHHHhhC-CCCeEEEEechhhH-HHHH---HHHCCCchhh
Q 014017 329 YANYREALVEAQADESEGADILL---VK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYS-MIKA---GGALKMIDEQ 397 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lM---VK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYa-Mika---Aa~~G~id~~ 397 (432)
..|..|++..... .-.|+++ .- |++.=+|++++++..+ ++||..+....+=. .+++ +...|++...
T Consensus 23 ~~~~~~~l~~~~~---~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 23 FSSQSSFQDAMSR---ISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred eCCHHHHHHHhcc---CCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecC
Confidence 5677787765432 2358886 44 6777789999999876 59999985433222 3332 2335555433
Q ss_pred ---HHHHHHHHHHHH
Q 014017 398 ---RVMMESLMCLRR 409 (432)
Q Consensus 398 ---~~~~EsL~~ikR 409 (432)
+.+++++....+
T Consensus 100 ~~~~eL~~aI~~v~~ 114 (207)
T PRK11475 100 STLEILQQELFLSLN 114 (207)
T ss_pred CCHHHHHHHHHHHHC
Confidence 334444444433
No 490
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=27.39 E-value=3.6e+02 Score=23.46 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh-CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK-YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~-~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..+..+++.... +...|++++= |.+..+++++.++.. ..+|+....-...-.....+.+.|+.|
T Consensus 28 ~~~~~~~~~~~~---~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~~~~~~~~~~~~~~Ga~~ 95 (218)
T TIGR01387 28 ASNGRDGLHLAL---KDDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTARDSVADKVKGLDLGADD 95 (218)
T ss_pred ECCHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEcCCCHHHHHHHHHcCCCe
Confidence 346677766543 3457888875 566778999999875 469999987777778888888888754
No 491
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=27.34 E-value=6.7e+02 Score=25.48 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC--CC--HHHHHHHHHHHC-CCeEEEeeecccCCCCCC----
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--GL--VPRTIWLLKDRY-PDLVIYTDVALDPYSSDG---- 228 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~--g~--v~raIr~iK~~f-Pdl~IitDVcLc~YTshG---- 228 (432)
.+.++++++++.|.+.|-+- |.. .+ .+.+. ++ -.+-|+++++.+ |++.|+.|.. ..||-.-
T Consensus 126 ~~~~~~~~~~~~Gf~~~KiK--vg~--~~-----~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN-~~~~~~~A~~~ 195 (352)
T cd03325 126 DVAEAARARREAGFTAVKMN--ATE--EL-----QWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH-GRVSKPMAKDL 195 (352)
T ss_pred HHHHHHHHHHHcCCCEEEec--CCC--Cc-----ccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECC-CCCCHHHHHHH
Confidence 57888999999999999982 211 01 01110 11 146788999998 7999999997 6777221
Q ss_pred -----ccee--ecCCCccccHHHHHHHHH----------------HHHH-HHHcCCCeecCCCCCCchHHHHHHHHHHCC
Q 014017 229 -----HDGI--VREDGVIMNDETVHQLCK----------------QAVS-QARAGADVVSPSDMMDGRVGAIRAALDAEG 284 (432)
Q Consensus 229 -----HcGI--l~~~g~IdND~Tl~~Lak----------------~Avs-~A~AGADiVAPSDMMDGrV~aIR~aLD~~G 284 (432)
..|+ +.+.=..++-+.+..|.+ +... ..+-++|+|-|-=|--|=+...++..+.+-
T Consensus 196 ~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~ 275 (352)
T cd03325 196 AKELEPYRLLFIEEPVLPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAE 275 (352)
T ss_pred HHhccccCCcEEECCCCccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHH
Confidence 1122 222111123344444443 1112 224469999998888887777666665554
Q ss_pred Cccceeecch
Q 014017 285 FQHVSIMSYT 294 (432)
Q Consensus 285 f~~v~ImSYS 294 (432)
-.++.+|.++
T Consensus 276 ~~gi~~~~h~ 285 (352)
T cd03325 276 AYDVALAPHC 285 (352)
T ss_pred HcCCcEeccC
Confidence 4466777664
No 492
>TIGR00035 asp_race aspartate racemase.
Probab=27.28 E-value=2.3e+02 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=39.2
Q ss_pred CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 370 PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 370 ~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+|+..++-.--....++-...+|-+....+.++...+.++|||.|+
T Consensus 34 ~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 34 HPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFII 80 (229)
T ss_pred CCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEE
Confidence 48888888876666666666678888889999999999999999986
No 493
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=27.26 E-value=4.4e+02 Score=25.34 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=59.1
Q ss_pred chHHHHHHHHHH---CCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC
Q 014017 271 GRVGAIRAALDA---EGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG 346 (432)
Q Consensus 271 GrV~aIR~aLD~---~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG 346 (432)
..+..||+.++. .|+ +|=+||.=+-+- .|+.-.++.+.-- ..+=+.|.. -.+.++.++++. -+.++
T Consensus 7 a~~~ei~~~~~~~~i~GvTTNPsll~k~~~~--~~~~~~~~i~~~~---~~~v~~qv~----~~~~e~~i~~a~-~l~~~ 76 (211)
T cd00956 7 ADLEEIKKASETGLLDGVTTNPSLIAKSGRI--DFEAVLKEICEII---DGPVSAQVV----STDAEGMVAEAR-KLASL 76 (211)
T ss_pred CCHHHHHHHHhcCCcCccccCHHHHHhcCCc--CHHHHHHHHHHhc---CCCEEEEEE----eCCHHHHHHHHH-HHHHh
Confidence 357788888875 577 666777644430 2222223333221 224567776 666666665554 47777
Q ss_pred CcEEEEc-CCCc-hhHHHHHHHhhCCCCeEEEEe
Q 014017 347 ADILLVK-PGLP-YLDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 347 AD~lMVK-Pal~-YLDII~~vk~~~~lPvaaYqV 378 (432)
.+.++|| |... =+..|+.+++. ++++.+--|
T Consensus 77 ~~~~~iKIP~T~~gl~ai~~L~~~-gi~v~~T~V 109 (211)
T cd00956 77 GGNVVVKIPVTEDGLKAIKKLSEE-GIKTNVTAI 109 (211)
T ss_pred CCCEEEEEcCcHhHHHHHHHHHHc-CCceeeEEe
Confidence 7788888 4432 27788888765 788887766
No 494
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional
Probab=27.19 E-value=1.4e+02 Score=30.90 Aligned_cols=61 Identities=18% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHHhcc
Q 014017 360 DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLCGE 430 (432)
Q Consensus 360 DII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~~~ 430 (432)
++++++++ .+++|.+|.|..| + ++. .++....+.+.+ +.++|.|.|||-|-..+.++|...
T Consensus 294 ~~v~~ah~-~Gl~V~~WTVn~~-~-~~~-----~~~d~~~~~~~~--~~~~GVDGIiTD~P~~~~~~l~~~ 354 (355)
T PRK11143 294 GMVKEAHQ-AKLVVHPYTVRAD-Q-LPE-----YATDVNQLYDIL--YNQAGVDGVFTDFPDKAVKFLNKQ 354 (355)
T ss_pred HHHHHHHH-cCCEEEEEEeccc-c-chh-----hhcChHHHHHHH--HHccCCCEEEcCChHHHHHHHhcC
Confidence 56776655 6899999999988 2 321 222222222321 248899999999998888888654
No 495
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=27.16 E-value=25 Score=35.13 Aligned_cols=102 Identities=21% Similarity=0.304 Sum_probs=67.1
Q ss_pred CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCeecC--CC
Q 014017 192 AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADVVSP--SD 267 (432)
Q Consensus 192 A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGI--l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAP--SD 267 (432)
++|-++.+.+|.++.| .+|+..|+.=+ |-|..|-.-+ |..+| |.-..|+=--..||+.-|+|||++|+| +-
T Consensus 72 s~d~e~mi~eA~~L~~-~~~~~~i~IKI---P~T~eGl~Ai~~L~~eG-I~~NvTLiFS~~QAl~aa~aga~~iSpFvgR 146 (239)
T COG0176 72 SFDAEAMIEEARRLAK-LIDNVGIVIKI---PATWEGLKAIKALEAEG-IKTNVTLIFSAAQALLAAEAGATYISPFVGR 146 (239)
T ss_pred cccHHHHHHHHHHHHH-hcCcCCeEEEe---CCCHHHHHHHHHHHHCC-CeeeEEEEecHHHHHHHHHhCCeEEEeecch
Confidence 4777899999988775 46766333222 6777774443 33456 666677777778999999999999999 22
Q ss_pred CCC------chHHHHHHHHHHCCCccceeecchhhhc
Q 014017 268 MMD------GRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (432)
Q Consensus 268 MMD------GrV~aIR~aLD~~Gf~~v~ImSYSaKyA 298 (432)
|.| +-|..+|++++..+.....++.=|.+|.
T Consensus 147 i~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~~~~ 183 (239)
T COG0176 147 IDDWGIDGMLGIAEAREIYDYYKQHGAKTLVASARFP 183 (239)
T ss_pred HHhhccCchHHHHHHHHHHHHhccccceEEEecCccH
Confidence 232 2477788888877765444444444443
No 496
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=27.12 E-value=2.6e+02 Score=29.52 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHCCCc---cceeecchhhhccccchhhhhhhhCCCCCCCccccc--ccccCCCCCHHHHHHHHHhchhc
Q 014017 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYV--IRVIELYANYREALVEAQADESE 345 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf~---~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQ--md~~~~p~N~~EAlre~~~Di~E 345 (432)
=+|..||+++++.||. ++.|+-=++ ||.||.. .+-+|. .+ . --+.+||++ ...++.|
T Consensus 214 ~~l~~i~eAi~~~g~~~G~dv~i~lD~a--as~~~~~------------~~y~~~~~~~-~--~~t~~eai~-~~~~l~e 275 (408)
T cd03313 214 EALDLLVEAIEKAGYEPGKKIAIALDVA--ASEFYDE------------GKYVYDSDEG-K--KLTSEELID-YYKELVK 275 (408)
T ss_pred HHHHHHHHHHHHhcCCCCCeEEEEEehh--hhhhccc------------CcceeccCCC-c--ccCHHHHHH-HHHHHHH
Confidence 3578899999999884 677876544 4677731 122221 01 0 113356544 3344444
Q ss_pred CCcEEEEcCCCch--hHHHHHHHhhC--CCCeEEEEec-hhhHHHHHHHHCCCchh-----hH--HHHHHHHH---HHHc
Q 014017 346 GADILLVKPGLPY--LDVIRLLRDKY--PLPIAAYQVS-GEYSMIKAGGALKMIDE-----QR--VMMESLMC---LRRA 410 (432)
Q Consensus 346 GAD~lMVKPal~Y--LDII~~vk~~~--~lPvaaYqVS-GEYaMikaAa~~G~id~-----~~--~~~EsL~~---ikRA 410 (432)
--++..+.=-++. ++=.+++++++ ++||++-..+ -...-++.+.+.|+.|- -+ -+.|++.. .+.+
T Consensus 276 ~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ia~lA~~~ 355 (408)
T cd03313 276 KYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEAIKLAKKN 355 (408)
T ss_pred hCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHc
Confidence 4667777644443 56788999997 8999887733 13455666777776654 12 14555544 4777
Q ss_pred CccEeehhc
Q 014017 411 GADIILTYF 419 (432)
Q Consensus 411 GAd~IiTYf 419 (432)
|-.++++..
T Consensus 356 G~~~~~sh~ 364 (408)
T cd03313 356 GYGVVVSHR 364 (408)
T ss_pred CCeEEccCC
Confidence 888888654
No 497
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=27.11 E-value=74 Score=31.73 Aligned_cols=57 Identities=12% Similarity=0.288 Sum_probs=41.9
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
++.+ ++.+.+.++.+.|-..|=+... .|+.|...+++ ....++++.||++.||++|-
T Consensus 23 ~tpe-Eia~~A~~c~~AGAa~vH~H~R-----~~~~G~~s~d~-~~~~e~~~~IR~~~pd~iv~ 79 (272)
T PF05853_consen 23 ITPE-EIAADAVACYEAGAAIVHIHAR-----DDEDGRPSLDP-ELYAEVVEAIRAACPDLIVQ 79 (272)
T ss_dssp -SHH-HHHHHHHHHHHHTESEEEE-EE------TTTS-EE--H-HHHHHHHHHHHHHSTTSEEE
T ss_pred CCHH-HHHHHHHHHHHcCCcEEEeecC-----CCCCCCcCCCH-HHHHHHHHHHHHHCCCeEEE
Confidence 4454 6999999999999999888664 25667766655 46678999999999998875
No 498
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=27.10 E-value=1.5e+02 Score=29.18 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=32.9
Q ss_pred hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 359 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 359 LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+.+++...+..++|+.-.+.+|+| ++-+-+.+..+++.|++.|++
T Consensus 47 ~~~~~~qA~algiPl~~~~~~~~~--------------e~~~~~l~~~l~~~gv~~vv~ 91 (222)
T TIGR00289 47 LHLTDLVAEAVGIPLIKLYTSGEE--------------EKEVEDLAGQLGELDVEALCI 91 (222)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCch--------------hHHHHHHHHHHHHcCCCEEEE
Confidence 577888888899999989999986 222233334457779998876
No 499
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=27.10 E-value=1.9e+02 Score=29.97 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=54.1
Q ss_pred ceeecchhhhcc--ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEE-EE-------cCCCc
Q 014017 288 VSIMSYTAKYAS--SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADIL-LV-------KPGLP 357 (432)
Q Consensus 288 v~ImSYSaKyAS--sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l-MV-------KPal~ 357 (432)
+.++++ +.+++ +.|--|+.- .+.+ .|.|+ + +|.++++..=.+.|+.=+ +| ++---
T Consensus 75 ~~~in~-Tn~C~~~C~YC~f~~~------~~~~-~~~ls----~---eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~ 139 (371)
T PRK09240 75 YTPLYL-SNYCANDCTYCGFSMS------NKIK-RKTLD----E---EEIEREMAAIKKLGFEHILLLTGEHEAKVGVDY 139 (371)
T ss_pred EeceEE-cccccCcCCcCCCCCC------CCCc-cccCC----H---HHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHH
Confidence 456766 55665 556555311 1122 37777 4 677777666567898866 55 22334
Q ss_pred hhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 358 YLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 358 YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
|+++++.+|+.++ +-+ ..|-++ .|.+..+|.||++-+-
T Consensus 140 l~~~i~~Ik~~~p~i~i----------------~~g~lt-----~e~l~~Lk~aGv~r~~ 178 (371)
T PRK09240 140 IRRALPIAREYFSSVSI----------------EVQPLS-----EEEYAELVELGLDGVT 178 (371)
T ss_pred HHHHHHHHHHhCCCcee----------------ccCCCC-----HHHHHHHHHcCCCEEE
Confidence 6899999998762 211 123344 3345778888887543
No 500
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=27.08 E-value=2.5e+02 Score=28.16 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.1
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEee
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFP 178 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFg 178 (432)
.++.+ +++++++++.+.|++.|++-|
T Consensus 40 ~ls~e-ei~~~~~~~~~~G~~ei~l~g 65 (336)
T PRK06245 40 LLSPE-EVKEILRRGADAGCTEALFTF 65 (336)
T ss_pred cCCHH-HHHHHHHHHHHCCCCEEEEec
Confidence 35775 699999999999999988865
Done!