Query 014017
Match_columns 432
No_of_seqs 134 out of 1062
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 03:59:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w5q_A Delta-aminolevulinic ac 100.0 6E-157 2E-161 1154.7 32.8 331 92-429 2-335 (337)
2 3obk_A Delta-aminolevulinic ac 100.0 7E-156 2E-160 1152.3 31.2 333 89-429 9-343 (356)
3 1w1z_A Delta-aminolevulinic ac 100.0 9E-156 3E-160 1143.2 31.2 325 96-428 3-328 (328)
4 1l6s_A Porphobilinogen synthas 100.0 3E-153 1E-157 1123.0 33.1 319 101-428 2-321 (323)
5 1h7n_A 5-aminolaevulinic acid 100.0 2E-151 5E-156 1118.9 35.2 328 98-430 10-341 (342)
6 1pv8_A Delta-aminolevulinic ac 100.0 4E-151 1E-155 1111.8 29.5 323 101-429 2-329 (330)
7 3ajx_A 3-hexulose-6-phosphate 96.2 0.14 4.6E-06 45.4 14.7 162 158-416 14-184 (207)
8 1vhc_A Putative KHG/KDPG aldol 95.8 0.13 4.5E-06 47.9 13.0 150 158-416 30-184 (224)
9 1wbh_A KHG/KDPG aldolase; lyas 95.4 0.28 9.5E-06 45.3 13.6 151 158-416 29-183 (214)
10 1qop_A Tryptophan synthase alp 95.3 0.68 2.3E-05 43.6 16.2 171 158-416 32-232 (268)
11 1mxs_A KDPG aldolase; 2-keto-3 95.2 0.22 7.6E-06 46.5 12.3 151 158-416 39-193 (225)
12 1y0e_A Putative N-acetylmannos 95.2 0.98 3.4E-05 40.3 16.1 64 330-417 127-203 (223)
13 3f4w_A Putative hexulose 6 pho 94.8 0.26 8.8E-06 43.7 11.2 164 158-417 14-186 (211)
14 1wa3_A 2-keto-3-deoxy-6-phosph 94.7 0.3 1E-05 43.2 11.3 154 154-416 20-176 (205)
15 1rd5_A Tryptophan synthase alp 94.5 1 3.5E-05 41.7 14.9 179 158-422 33-236 (262)
16 4e38_A Keto-hydroxyglutarate-a 94.1 1.2 4.1E-05 42.2 14.5 151 158-416 47-200 (232)
17 3nav_A Tryptophan synthase alp 94.0 2.6 9E-05 40.5 16.9 105 158-293 35-159 (271)
18 3eol_A Isocitrate lyase; seatt 93.3 0.92 3.2E-05 46.9 13.2 146 250-416 164-345 (433)
19 2yzr_A Pyridoxal biosynthesis 93.2 0.58 2E-05 46.9 11.2 95 249-354 27-149 (330)
20 2ekc_A AQ_1548, tryptophan syn 93.0 2.7 9.3E-05 39.5 15.0 106 158-292 32-155 (262)
21 3lg3_A Isocitrate lyase; conse 92.6 1.3 4.4E-05 45.9 13.0 149 250-416 171-350 (435)
22 2qiw_A PEP phosphonomutase; st 92.5 2.6 9E-05 40.2 14.3 168 146-375 23-209 (255)
23 3q58_A N-acetylmannosamine-6-p 91.4 0.62 2.1E-05 43.4 8.4 170 147-416 27-208 (229)
24 3lab_A Putative KDPG (2-keto-3 91.4 4.7 0.00016 38.0 14.4 156 158-416 26-185 (217)
25 1f8m_A Isocitrate lyase, ICL; 91.3 1.5 5.3E-05 45.2 11.9 122 250-384 167-321 (429)
26 1o66_A 3-methyl-2-oxobutanoate 91.2 3.1 0.00011 40.6 13.3 165 147-347 85-255 (275)
27 3i4e_A Isocitrate lyase; struc 91.2 0.77 2.6E-05 47.6 9.5 120 250-383 171-324 (439)
28 1vzw_A Phosphoribosyl isomeras 90.7 0.93 3.2E-05 41.1 8.6 51 316-375 23-80 (244)
29 3igs_A N-acetylmannosamine-6-p 90.6 0.89 3E-05 42.4 8.6 160 158-416 37-208 (232)
30 3vnd_A TSA, tryptophan synthas 90.6 3.9 0.00013 39.2 13.3 103 158-293 33-157 (267)
31 2v82_A 2-dehydro-3-deoxy-6-pho 90.4 0.8 2.7E-05 40.7 7.8 143 245-416 18-174 (212)
32 2yw3_A 4-hydroxy-2-oxoglutarat 90.4 6.1 0.00021 35.9 13.8 149 158-416 26-177 (207)
33 1vzw_A Phosphoribosyl isomeras 90.2 4 0.00014 36.9 12.3 178 158-416 33-220 (244)
34 1to3_A Putative aldolase YIHT; 89.2 1.4 4.6E-05 42.9 8.9 117 257-417 119-253 (304)
35 2ze3_A DFA0005; organic waste 89.0 1.3 4.5E-05 42.8 8.6 192 168-411 34-254 (275)
36 3fa4_A 2,3-dimethylmalate lyas 88.7 4.2 0.00015 40.0 12.1 189 166-412 34-262 (302)
37 1s2w_A Phosphoenolpyruvate pho 88.6 5.8 0.0002 38.6 13.0 151 168-375 37-214 (295)
38 2y88_A Phosphoribosyl isomeras 88.5 5.1 0.00017 36.0 11.7 182 158-416 32-223 (244)
39 1oy0_A Ketopantoate hydroxymet 88.5 4.1 0.00014 39.8 11.7 165 147-347 102-273 (281)
40 3na8_A Putative dihydrodipicol 88.1 4.5 0.00015 39.3 11.8 135 195-380 11-160 (315)
41 2nv1_A Pyridoxal biosynthesis 87.7 2.4 8E-05 40.5 9.4 51 320-374 123-211 (305)
42 1lt8_A Betaine-homocysteine me 87.7 3.6 0.00012 41.9 11.2 225 158-428 54-315 (406)
43 3si9_A DHDPS, dihydrodipicolin 87.5 5 0.00017 39.0 11.7 109 234-380 35-158 (315)
44 2ojp_A DHDPS, dihydrodipicolin 87.4 4.2 0.00014 38.8 11.0 108 234-379 14-136 (292)
45 1m3u_A 3-methyl-2-oxobutanoate 87.2 5 0.00017 38.9 11.4 165 147-347 85-255 (264)
46 3lye_A Oxaloacetate acetyl hyd 87.0 4.5 0.00015 39.8 11.1 188 166-412 41-270 (307)
47 2y88_A Phosphoribosyl isomeras 86.9 1.3 4.5E-05 39.9 6.8 51 316-375 22-79 (244)
48 3cpr_A Dihydrodipicolinate syn 86.6 6.6 0.00023 37.7 12.0 108 234-379 29-151 (304)
49 1geq_A Tryptophan synthase alp 86.4 5.7 0.0002 35.9 10.8 108 251-417 100-219 (248)
50 2hjp_A Phosphonopyruvate hydro 86.1 6.4 0.00022 38.3 11.6 202 147-411 19-257 (290)
51 3eul_A Possible nitrate/nitrit 85.9 5 0.00017 32.2 9.2 93 329-429 47-149 (152)
52 1ujp_A Tryptophan synthase alp 85.3 1.8 6.2E-05 41.4 7.2 38 337-376 33-97 (271)
53 1zlp_A PSR132, petal death pro 85.2 13 0.00043 36.9 13.3 155 166-379 55-234 (318)
54 2wkj_A N-acetylneuraminate lya 84.8 6.3 0.00021 37.9 10.8 107 234-378 24-146 (303)
55 1f6k_A N-acetylneuraminate lya 84.8 6.7 0.00023 37.4 10.9 106 235-378 17-138 (293)
56 3nav_A Tryptophan synthase alp 84.5 4.7 0.00016 38.8 9.7 56 359-415 85-154 (271)
57 1q7z_A 5-methyltetrahydrofolat 83.9 14 0.00046 39.0 13.7 257 133-429 15-289 (566)
58 2w6r_A Imidazole glycerol phos 83.9 25 0.00086 31.9 16.0 170 149-375 24-205 (266)
59 1kbi_A Cytochrome B2, L-LCR; f 83.9 6.7 0.00023 40.7 11.2 39 359-417 332-370 (511)
60 3f6p_A Transcriptional regulat 83.7 8.2 0.00028 29.9 9.2 64 329-395 32-98 (120)
61 3vav_A 3-methyl-2-oxobutanoate 83.7 11 0.00038 36.7 12.0 165 147-347 97-267 (275)
62 3ctl_A D-allulose-6-phosphate 83.2 0.77 2.6E-05 43.0 3.6 129 256-418 22-195 (231)
63 1yxy_A Putative N-acetylmannos 83.1 15 0.0005 33.0 11.9 67 159-263 90-157 (234)
64 3vav_A 3-methyl-2-oxobutanoate 83.0 3.3 0.00011 40.4 8.0 139 252-417 42-192 (275)
65 1q7z_A 5-methyltetrahydrofolat 82.7 3.3 0.00011 43.6 8.5 165 243-420 249-440 (566)
66 1oy0_A Ketopantoate hydroxymet 82.6 4 0.00014 39.9 8.4 141 252-417 47-198 (281)
67 2jfq_A Glutamate racemase; cel 82.5 6.7 0.00023 37.3 9.8 29 388-416 169-201 (286)
68 1zuw_A Glutamate racemase 1; ( 82.3 15 0.00051 34.6 12.1 29 388-416 151-182 (272)
69 3eoo_A Methylisocitrate lyase; 82.1 4.4 0.00015 39.7 8.5 156 167-379 39-216 (298)
70 3ih1_A Methylisocitrate lyase; 81.5 9.1 0.00031 37.6 10.6 102 158-280 105-210 (305)
71 2dgd_A 223AA long hypothetical 81.0 2.2 7.5E-05 38.5 5.6 41 334-374 156-200 (223)
72 3o07_A Pyridoxine biosynthesis 80.9 1.5 5E-05 43.4 4.6 55 317-375 110-203 (291)
73 2gzm_A Glutamate racemase; enz 80.7 20 0.00068 33.5 12.2 29 388-416 150-181 (267)
74 1zlp_A PSR132, petal death pro 80.0 11 0.00036 37.4 10.5 120 147-292 108-230 (318)
75 3hgj_A Chromate reductase; TIM 79.2 11 0.00038 36.7 10.4 96 158-267 153-260 (349)
76 3i10_A Putative glycerophospho 79.2 11 0.00039 35.9 10.2 140 271-431 127-275 (278)
77 3tr9_A Dihydropteroate synthas 78.9 4.4 0.00015 40.1 7.4 99 308-419 33-156 (314)
78 1xg4_A Probable methylisocitra 78.6 9.1 0.00031 37.3 9.5 166 147-375 21-208 (295)
79 3b4u_A Dihydrodipicolinate syn 78.5 17 0.00059 34.6 11.2 109 234-380 16-143 (294)
80 2yr1_A 3-dehydroquinate dehydr 77.9 5.6 0.00019 37.7 7.5 92 328-419 27-147 (257)
81 2jfz_A Glutamate racemase; cel 77.7 5.9 0.0002 36.8 7.6 138 202-353 15-180 (255)
82 1o66_A 3-methyl-2-oxobutanoate 77.6 7 0.00024 38.1 8.3 141 252-417 30-180 (275)
83 3ixl_A Amdase, arylmalonate de 77.3 17 0.00057 33.8 10.5 119 248-374 55-209 (240)
84 3ih1_A Methylisocitrate lyase; 77.3 12 0.0004 36.8 9.8 166 147-379 33-220 (305)
85 2vp8_A Dihydropteroate synthas 77.0 3.8 0.00013 40.5 6.3 84 332-419 64-168 (318)
86 3jr2_A Hexulose-6-phosphate sy 76.3 8.5 0.00029 34.7 8.0 83 329-415 15-113 (218)
87 1vqt_A Orotidine 5'-phosphate 76.3 4 0.00014 37.5 5.9 149 191-416 42-190 (213)
88 1xg4_A Probable methylisocitra 76.1 19 0.00066 35.0 11.0 116 147-281 85-203 (295)
89 3ctl_A D-allulose-6-phosphate 75.9 12 0.00042 34.8 9.2 45 329-377 12-64 (231)
90 2pln_A HP1043, response regula 75.5 9.3 0.00032 29.9 7.2 62 329-394 48-110 (137)
91 2vvt_A Glutamate racemase; iso 75.5 19 0.00066 34.2 10.6 29 388-416 171-202 (290)
92 2qjg_A Putative aldolase MJ040 74.8 11 0.00038 34.6 8.5 70 329-417 165-236 (273)
93 2ekc_A AQ_1548, tryptophan syn 74.6 11 0.00039 35.2 8.7 44 331-376 29-100 (262)
94 3cnb_A DNA-binding response re 74.4 23 0.00078 27.5 9.2 64 329-395 40-109 (143)
95 3b8i_A PA4872 oxaloacetate dec 74.4 15 0.0005 35.8 9.6 42 332-374 167-208 (287)
96 1h1y_A D-ribulose-5-phosphate 74.2 5.3 0.00018 36.3 6.1 52 346-417 138-200 (228)
97 1tx2_A DHPS, dihydropteroate s 73.9 11 0.00037 36.9 8.5 101 309-419 46-167 (297)
98 2hjp_A Phosphonopyruvate hydro 73.8 25 0.00087 34.1 11.1 116 147-281 82-203 (290)
99 1mzh_A Deoxyribose-phosphate a 73.6 9.8 0.00034 34.9 7.8 67 343-428 142-214 (225)
100 1qop_A Tryptophan synthase alp 73.0 7.7 0.00026 36.4 7.1 31 343-375 41-99 (268)
101 1m3u_A 3-methyl-2-oxobutanoate 72.6 8.5 0.00029 37.3 7.4 134 252-417 30-180 (264)
102 3gl9_A Response regulator; bet 72.5 19 0.00064 27.9 8.2 64 329-395 32-101 (122)
103 2yci_X 5-methyltetrahydrofolat 72.5 21 0.00073 34.1 10.1 87 331-419 32-133 (271)
104 3cg0_A Response regulator rece 72.1 18 0.00061 28.1 8.0 64 329-395 40-107 (140)
105 2qzj_A Two-component response 72.0 26 0.0009 27.6 9.1 64 329-395 34-100 (136)
106 1b73_A Glutamate racemase; iso 71.8 30 0.001 31.9 10.7 166 202-388 15-208 (254)
107 3s1x_A Probable transaldolase; 71.7 3.5 0.00012 39.0 4.4 48 244-292 110-165 (223)
108 1q6o_A Humps, 3-keto-L-gulonat 71.6 9.2 0.00031 34.3 7.0 62 201-285 45-107 (216)
109 1p0k_A Isopentenyl-diphosphate 71.6 11 0.00039 36.3 8.1 56 345-417 139-208 (349)
110 1tmy_A CHEY protein, TMY; chem 71.4 13 0.00044 28.2 6.9 64 329-395 33-100 (120)
111 3eod_A Protein HNR; response r 71.3 16 0.00054 28.2 7.5 62 329-393 37-102 (130)
112 3lye_A Oxaloacetate acetyl hyd 71.1 28 0.00094 34.3 10.7 103 158-281 104-214 (307)
113 2a9o_A Response regulator; ess 70.9 20 0.00068 26.9 7.8 64 329-395 31-97 (120)
114 2eq5_A 228AA long hypothetical 70.4 58 0.002 28.9 12.0 152 202-374 26-203 (228)
115 1k66_A Phytochrome response re 70.3 32 0.0011 26.7 9.1 67 329-395 38-117 (149)
116 3crn_A Response regulator rece 70.2 36 0.0012 26.5 9.4 65 329-396 33-101 (132)
117 3jte_A Response regulator rece 70.2 37 0.0013 26.5 9.6 66 329-395 33-102 (143)
118 2xed_A Putative maleate isomer 70.0 5.2 0.00018 37.8 5.2 119 248-374 79-237 (273)
119 4ab4_A Xenobiotic reductase B; 69.7 12 0.00039 37.4 7.8 180 158-396 154-346 (362)
120 3kht_A Response regulator; PSI 69.7 25 0.00086 27.6 8.5 63 329-394 37-105 (144)
121 2dwu_A Glutamate racemase; iso 69.6 40 0.0014 31.7 11.2 29 388-416 154-185 (276)
122 1f76_A Dihydroorotate dehydrog 69.6 13 0.00044 35.6 7.9 69 334-416 153-243 (336)
123 2ze3_A DFA0005; organic waste 69.2 41 0.0014 32.3 11.4 117 147-281 83-204 (275)
124 3d0c_A Dihydrodipicolinate syn 69.2 8.6 0.0003 37.2 6.6 107 235-380 26-147 (314)
125 2qf7_A Pyruvate carboxylase pr 68.7 85 0.0029 35.8 15.4 195 132-378 550-759 (1165)
126 3heb_A Response regulator rece 68.6 43 0.0015 26.6 9.8 67 329-395 36-114 (152)
127 3ffs_A Inosine-5-monophosphate 68.5 8.4 0.00029 39.1 6.6 55 343-417 153-211 (400)
128 3hdg_A Uncharacterized protein 68.3 25 0.00086 27.3 8.1 63 329-394 37-103 (137)
129 2zbt_A Pyridoxal biosynthesis 68.2 9.4 0.00032 35.9 6.5 66 329-416 132-236 (297)
130 3t6k_A Response regulator rece 68.2 19 0.00066 28.4 7.5 64 329-395 34-103 (136)
131 1sfl_A 3-dehydroquinate dehydr 67.8 9 0.00031 35.7 6.2 90 330-419 14-133 (238)
132 3gt7_A Sensor protein; structu 67.7 35 0.0012 27.4 9.2 63 329-394 37-105 (154)
133 2qvg_A Two component response 67.7 27 0.00093 27.2 8.2 67 329-395 39-114 (143)
134 1qo2_A Molecule: N-((5-phospho 67.4 12 0.00039 33.9 6.7 52 316-375 20-78 (241)
135 3f4w_A Putative hexulose 6 pho 67.2 38 0.0013 29.6 9.9 87 329-416 9-108 (211)
136 3o1n_A 3-dehydroquinate dehydr 67.1 11 0.00039 36.1 6.9 91 329-419 48-167 (276)
137 4e7p_A Response regulator; DNA 67.1 38 0.0013 26.9 9.2 64 329-395 52-119 (150)
138 2nx9_A Oxaloacetate decarboxyl 67.0 16 0.00054 37.7 8.4 211 147-407 91-331 (464)
139 2gou_A Oxidoreductase, FMN-bin 66.8 1E+02 0.0035 30.3 16.6 33 343-375 260-298 (365)
140 3exr_A RMPD (hexulose-6-phosph 66.7 12 0.0004 34.5 6.7 61 201-284 47-108 (221)
141 1srr_A SPO0F, sporulation resp 66.7 17 0.00059 27.7 6.7 64 329-395 33-100 (124)
142 2vef_A Dihydropteroate synthas 66.3 8.5 0.00029 37.8 6.0 98 309-419 16-137 (314)
143 1k68_A Phytochrome response re 66.1 42 0.0014 25.6 9.3 67 329-395 34-110 (140)
144 1yad_A Regulatory protein TENI 66.1 12 0.00042 33.3 6.6 54 343-416 127-190 (221)
145 2qxy_A Response regulator; reg 66.0 12 0.00042 29.3 5.9 64 329-395 34-100 (142)
146 2ftp_A Hydroxymethylglutaryl-C 66.0 54 0.0018 31.2 11.4 79 319-415 77-176 (302)
147 1ka9_F Imidazole glycerol phos 66.0 16 0.00055 32.9 7.4 42 331-375 32-80 (252)
148 1xhf_A DYE resistance, aerobic 65.9 27 0.00091 26.5 7.7 64 329-395 33-99 (123)
149 1w8s_A FBP aldolase, fructose- 65.9 39 0.0013 31.8 10.3 175 158-417 42-230 (263)
150 3ajx_A 3-hexulose-6-phosphate 65.9 6.1 0.00021 34.7 4.5 83 329-416 9-108 (207)
151 1i3c_A Response regulator RCP1 65.8 47 0.0016 26.5 9.5 68 329-396 40-117 (149)
152 3hv2_A Response regulator/HD d 65.6 40 0.0014 26.9 9.0 61 329-392 44-108 (153)
153 1zgz_A Torcad operon transcrip 65.6 41 0.0014 25.4 8.8 64 329-395 32-98 (122)
154 2r25_B Osmosensing histidine p 65.5 27 0.00093 27.4 7.9 67 329-395 33-106 (133)
155 2rjn_A Response regulator rece 65.5 48 0.0017 26.4 9.5 61 329-392 37-101 (154)
156 2pl1_A Transcriptional regulat 65.3 38 0.0013 25.4 8.4 64 329-395 30-97 (121)
157 2zay_A Response regulator rece 65.3 20 0.00067 28.3 7.0 64 329-395 38-107 (147)
158 3r8r_A Transaldolase; pentose 64.9 4.2 0.00014 38.2 3.3 45 247-292 111-163 (212)
159 4fo4_A Inosine 5'-monophosphat 64.5 11 0.00037 37.7 6.4 55 343-417 117-176 (366)
160 3b8i_A PA4872 oxaloacetate dec 64.4 33 0.0011 33.3 9.7 109 147-280 89-203 (287)
161 2ehh_A DHDPS, dihydrodipicolin 64.3 12 0.00042 35.6 6.5 107 236-380 15-136 (294)
162 3eoo_A Methylisocitrate lyase; 64.3 63 0.0021 31.6 11.7 102 158-280 99-206 (298)
163 3tak_A DHDPS, dihydrodipicolin 64.3 11 0.00038 35.8 6.2 109 234-380 14-137 (291)
164 2vc6_A MOSA, dihydrodipicolina 64.1 12 0.00041 35.6 6.4 108 235-380 14-136 (292)
165 2rfg_A Dihydrodipicolinate syn 63.7 11 0.00038 36.1 6.1 108 235-380 14-136 (297)
166 1ujp_A Tryptophan synthase alp 63.6 22 0.00076 33.8 8.2 41 252-293 112-153 (271)
167 2qr3_A Two-component system re 63.5 31 0.0011 26.7 7.8 64 329-395 33-105 (140)
168 3kcn_A Adenylate cyclase homol 63.4 52 0.0018 26.1 9.3 61 329-392 33-98 (151)
169 3b2n_A Uncharacterized protein 63.2 26 0.00089 27.3 7.3 64 329-395 35-102 (133)
170 1thf_D HISF protein; thermophI 63.2 7.7 0.00026 35.0 4.7 33 343-375 40-79 (253)
171 2qiw_A PEP phosphonomutase; st 63.1 7.4 0.00025 37.1 4.8 103 160-280 96-203 (255)
172 3l5l_A Xenobiotic reductase A; 63.1 16 0.00056 35.8 7.3 97 158-267 159-267 (363)
173 4h3d_A 3-dehydroquinate dehydr 62.8 25 0.00085 33.2 8.3 91 329-419 28-147 (258)
174 2czd_A Orotidine 5'-phosphate 62.6 3.6 0.00012 36.9 2.4 70 329-415 8-82 (208)
175 3tdn_A FLR symmetric alpha-bet 62.6 16 0.00054 33.2 6.7 40 333-375 38-84 (247)
176 1h5y_A HISF; histidine biosynt 62.5 42 0.0014 29.5 9.3 92 158-285 155-249 (253)
177 1p6q_A CHEY2; chemotaxis, sign 62.2 43 0.0015 25.6 8.3 64 329-395 37-106 (129)
178 1rqb_A Transcarboxylase 5S sub 62.2 20 0.00068 37.9 8.2 211 147-407 108-349 (539)
179 3m5v_A DHDPS, dihydrodipicolin 62.1 13 0.00046 35.5 6.4 109 235-380 21-144 (301)
180 1xky_A Dihydrodipicolinate syn 62.1 14 0.00047 35.5 6.5 109 234-380 25-148 (301)
181 3e96_A Dihydrodipicolinate syn 62.0 10 0.00036 36.6 5.6 124 205-378 7-145 (316)
182 3flu_A DHDPS, dihydrodipicolin 61.7 14 0.00048 35.3 6.5 109 234-380 20-143 (297)
183 4af0_A Inosine-5'-monophosphat 61.5 26 0.00089 37.4 8.9 99 155-292 278-389 (556)
184 3eb2_A Putative dihydrodipicol 61.3 12 0.00041 35.9 5.9 109 234-380 17-140 (300)
185 1thf_D HISF protein; thermophI 61.3 28 0.00095 31.3 8.0 162 158-375 31-200 (253)
186 1zh2_A KDP operon transcriptio 61.3 29 0.001 26.0 7.1 64 329-395 31-97 (121)
187 2yxg_A DHDPS, dihydrodipicolin 61.2 13 0.00046 35.2 6.2 107 236-380 15-136 (289)
188 4hb7_A Dihydropteroate synthas 61.1 11 0.00039 36.6 5.7 82 331-418 28-132 (270)
189 2v9d_A YAGE; dihydrodipicolini 61.0 13 0.00045 36.5 6.3 108 235-380 45-167 (343)
190 1z41_A YQJM, probable NADH-dep 61.0 23 0.00078 34.3 7.9 94 159-267 146-250 (338)
191 3cfy_A Putative LUXO repressor 60.8 30 0.001 27.3 7.3 64 329-395 34-101 (137)
192 1mzh_A Deoxyribose-phosphate a 60.8 29 0.00098 31.8 8.2 137 221-419 4-153 (225)
193 4adt_A Pyridoxine biosynthetic 60.8 10 0.00034 37.0 5.3 49 321-377 24-85 (297)
194 2hqr_A Putative transcriptiona 60.7 21 0.00073 30.6 6.9 79 329-411 30-116 (223)
195 2oqr_A Sensory transduction pr 60.4 52 0.0018 28.2 9.3 79 329-410 34-121 (230)
196 1h5y_A HISF; histidine biosynt 60.4 11 0.00038 33.3 5.1 33 343-375 43-82 (253)
197 4fxs_A Inosine-5'-monophosphat 60.1 8.4 0.00029 39.7 4.9 55 342-416 239-298 (496)
198 3bg3_A Pyruvate carboxylase, m 60.0 17 0.00058 39.6 7.4 216 159-418 199-449 (718)
199 3l21_A DHDPS, dihydrodipicolin 59.9 14 0.00047 35.6 6.0 109 234-380 28-151 (304)
200 2cw6_A Hydroxymethylglutaryl-C 59.5 73 0.0025 30.2 10.9 79 319-415 74-173 (298)
201 3qze_A DHDPS, dihydrodipicolin 59.5 16 0.00053 35.4 6.4 109 234-380 36-159 (314)
202 2r8w_A AGR_C_1641P; APC7498, d 59.3 14 0.00046 36.2 6.0 109 234-380 47-170 (332)
203 2oog_A Glycerophosphoryl diest 59.2 27 0.00093 32.6 7.8 65 344-429 216-280 (287)
204 1o5k_A DHDPS, dihydrodipicolin 59.0 15 0.00051 35.3 6.1 107 236-380 27-148 (306)
205 3r2g_A Inosine 5'-monophosphat 58.8 24 0.00082 35.3 7.8 77 157-274 99-176 (361)
206 3daq_A DHDPS, dihydrodipicolin 58.7 13 0.00046 35.3 5.7 107 234-379 16-137 (292)
207 3l12_A Putative glycerophospho 58.7 18 0.00061 34.4 6.5 64 346-430 245-308 (313)
208 3hdv_A Response regulator; PSI 58.6 38 0.0013 26.2 7.5 65 329-395 37-106 (136)
209 1dbw_A Transcriptional regulat 58.5 46 0.0016 25.4 7.9 64 329-395 33-100 (126)
210 1geq_A Tryptophan synthase alp 58.5 26 0.00088 31.6 7.3 19 358-376 68-86 (248)
211 3ru6_A Orotidine 5'-phosphate 58.2 7.8 0.00027 38.1 4.1 44 329-375 33-81 (303)
212 3qfe_A Putative dihydrodipicol 58.1 17 0.00059 35.2 6.4 109 235-381 25-150 (318)
213 4fo4_A Inosine 5'-monophosphat 57.4 53 0.0018 32.7 10.0 46 159-217 109-154 (366)
214 3ks6_A Glycerophosphoryl diest 57.4 21 0.00073 32.8 6.7 122 270-429 116-243 (250)
215 1dz3_A Stage 0 sporulation pro 57.0 37 0.0013 26.1 7.1 64 329-395 34-102 (130)
216 1eye_A DHPS 1, dihydropteroate 56.9 46 0.0016 32.1 9.1 99 310-419 13-132 (280)
217 1x1o_A Nicotinate-nucleotide p 56.6 19 0.00065 34.9 6.4 67 329-421 203-271 (286)
218 3cz5_A Two-component response 56.5 54 0.0019 26.0 8.2 91 329-427 37-137 (153)
219 2fym_A Enolase; RNA degradosom 56.4 22 0.00074 35.7 7.0 125 271-417 220-368 (431)
220 3vkj_A Isopentenyl-diphosphate 56.3 27 0.00092 34.8 7.6 90 305-416 113-216 (368)
221 4dpp_A DHDPS 2, dihydrodipicol 56.2 66 0.0023 32.2 10.4 109 234-380 72-193 (360)
222 2rdm_A Response regulator rece 56.1 19 0.00066 27.6 5.3 62 329-392 35-101 (132)
223 3s5o_A 4-hydroxy-2-oxoglutarat 55.8 20 0.0007 34.4 6.5 108 235-380 28-152 (307)
224 2qsj_A DNA-binding response re 55.8 49 0.0017 26.3 7.8 79 329-409 35-123 (154)
225 3t7v_A Methylornithine synthas 55.7 75 0.0026 30.1 10.4 50 318-374 86-144 (350)
226 1y0e_A Putative N-acetylmannos 55.7 1.1E+02 0.0037 26.9 11.8 49 160-219 78-126 (223)
227 2i1o_A Nicotinate phosphoribos 55.6 23 0.00079 35.8 7.1 66 200-290 197-273 (398)
228 3t7v_A Methylornithine synthas 55.3 1E+02 0.0036 29.1 11.3 34 253-286 287-337 (350)
229 3kts_A Glycerol uptake operon 55.2 22 0.00077 32.8 6.4 159 160-418 19-179 (192)
230 3khj_A Inosine-5-monophosphate 55.1 22 0.00074 35.3 6.7 55 343-417 114-172 (361)
231 1ydo_A HMG-COA lyase; TIM-barr 54.4 81 0.0028 30.3 10.5 80 318-415 74-174 (307)
232 1qkk_A DCTD, C4-dicarboxylate 54.0 30 0.001 27.6 6.3 64 329-395 33-100 (155)
233 3m6m_D Sensory/regulatory prot 54.0 53 0.0018 26.1 7.8 64 329-395 44-115 (143)
234 3ilh_A Two component response 53.9 42 0.0014 26.0 7.0 64 329-392 41-114 (146)
235 2y5s_A DHPS, dihydropteroate s 53.8 21 0.00072 34.8 6.2 99 309-419 29-148 (294)
236 1rd5_A Tryptophan synthase alp 53.7 15 0.00051 33.9 5.0 18 358-375 82-99 (262)
237 2h9a_B CO dehydrogenase/acetyl 53.4 52 0.0018 32.3 9.0 112 299-419 41-181 (310)
238 3fkr_A L-2-keto-3-deoxyarabona 53.3 24 0.00082 34.0 6.5 107 234-379 21-146 (309)
239 3kto_A Response regulator rece 53.3 23 0.00078 27.8 5.4 64 329-395 36-105 (136)
240 3dz1_A Dihydrodipicolinate syn 53.1 19 0.00065 34.7 5.8 108 234-380 21-144 (313)
241 2nuw_A 2-keto-3-deoxygluconate 53.1 26 0.0009 33.2 6.7 51 330-380 75-133 (288)
242 4fxs_A Inosine-5'-monophosphat 52.9 57 0.0019 33.5 9.6 47 158-217 231-277 (496)
243 2o55_A Putative glycerophospho 52.9 30 0.001 31.7 6.8 126 270-429 125-255 (258)
244 1vrd_A Inosine-5'-monophosphat 52.8 24 0.00081 35.7 6.7 55 343-417 246-305 (494)
245 1w3i_A EDA, 2-keto-3-deoxy glu 52.5 28 0.00097 33.1 6.8 49 330-378 75-131 (293)
246 1mvo_A PHOP response regulator 52.4 29 0.001 26.8 5.8 64 329-395 33-100 (136)
247 1jcn_A Inosine monophosphate d 52.3 17 0.00057 37.1 5.5 55 343-417 264-323 (514)
248 1ep3_A Dihydroorotate dehydrog 52.2 34 0.0012 31.7 7.2 66 336-417 113-195 (311)
249 2gkg_A Response regulator homo 52.2 41 0.0014 25.2 6.5 61 329-393 35-102 (127)
250 3h1g_A Chemotaxis protein CHEY 52.1 53 0.0018 25.3 7.4 65 329-395 36-106 (129)
251 1aj0_A DHPS, dihydropteroate s 51.9 35 0.0012 32.9 7.4 87 331-419 36-141 (282)
252 3qfw_A Ribulose-1,5-bisphospha 51.5 19 0.00066 36.5 5.8 141 242-417 142-283 (378)
253 3rqi_A Response regulator prot 51.4 34 0.0011 28.7 6.5 64 329-395 37-104 (184)
254 3lua_A Response regulator rece 51.4 37 0.0013 26.5 6.3 64 329-394 35-105 (140)
255 2r91_A 2-keto-3-deoxy-(6-phosp 51.3 27 0.00094 33.0 6.5 103 236-379 13-131 (286)
256 3a5f_A Dihydrodipicolinate syn 51.2 14 0.00046 35.2 4.4 107 235-380 16-137 (291)
257 3qja_A IGPS, indole-3-glycerol 51.2 91 0.0031 29.6 10.1 159 159-417 74-241 (272)
258 3r0j_A Possible two component 51.1 93 0.0032 27.3 9.6 77 329-408 53-139 (250)
259 3k13_A 5-methyltetrahydrofolat 51.0 50 0.0017 32.2 8.4 88 330-419 34-141 (300)
260 2dqw_A Dihydropteroate synthas 50.7 20 0.00068 35.0 5.5 97 309-419 35-154 (294)
261 3t8y_A CHEB, chemotaxis respon 50.6 39 0.0013 27.7 6.6 63 329-394 57-124 (164)
262 2fli_A Ribulose-phosphate 3-ep 50.6 37 0.0013 29.8 6.8 44 329-375 15-66 (220)
263 3f6c_A Positive transcription 50.5 43 0.0015 25.7 6.5 64 329-395 32-99 (134)
264 3inp_A D-ribulose-phosphate 3- 50.5 51 0.0018 31.1 8.2 83 329-417 39-140 (246)
265 1rpx_A Protein (ribulose-phosp 50.3 58 0.002 29.1 8.2 44 329-375 22-73 (230)
266 2c6q_A GMP reductase 2; TIM ba 50.2 30 0.001 34.0 6.8 58 338-415 122-186 (351)
267 1s8n_A Putative antiterminator 50.2 31 0.0011 29.2 6.1 64 329-395 44-110 (205)
268 2qf7_A Pyruvate carboxylase pr 49.8 40 0.0014 38.5 8.5 219 159-420 647-896 (1165)
269 2z6i_A Trans-2-enoyl-ACP reduc 49.8 36 0.0012 32.7 7.1 33 343-375 127-167 (332)
270 3hzh_A Chemotaxis response reg 49.4 74 0.0025 25.6 8.1 64 329-393 67-134 (157)
271 3qvq_A Phosphodiesterase OLEI0 49.4 37 0.0013 31.1 6.9 65 345-430 186-250 (252)
272 3gr7_A NADPH dehydrogenase; fl 49.4 32 0.0011 33.5 6.8 95 158-267 145-250 (340)
273 1xi3_A Thiamine phosphate pyro 49.3 34 0.0012 29.7 6.3 54 343-416 125-188 (215)
274 3h5i_A Response regulator/sens 49.0 24 0.00081 27.8 4.9 64 329-394 35-102 (140)
275 3i7m_A XAA-Pro dipeptidase; st 48.7 9.4 0.00032 31.5 2.5 36 267-303 1-37 (140)
276 3usb_A Inosine-5'-monophosphat 48.7 34 0.0011 35.3 7.1 124 272-416 194-323 (511)
277 4avf_A Inosine-5'-monophosphat 48.7 1.1E+02 0.0038 31.3 10.9 69 158-265 229-297 (490)
278 3bw2_A 2-nitropropane dioxygen 48.6 44 0.0015 32.4 7.7 42 330-375 153-213 (369)
279 1s2w_A Phosphoenolpyruvate pho 48.5 1.9E+02 0.0064 28.0 12.0 108 157-281 94-207 (295)
280 3usb_A Inosine-5'-monophosphat 48.5 48 0.0016 34.2 8.3 68 158-264 256-323 (511)
281 2yzr_A Pyridoxal biosynthesis 48.2 33 0.0011 34.4 6.7 55 343-416 34-101 (330)
282 2zsk_A PH1733, 226AA long hypo 48.0 1.5E+02 0.0052 26.5 12.3 27 390-416 163-190 (226)
283 3vgf_A Malto-oligosyltrehalose 47.9 1.1E+02 0.0036 31.6 10.7 121 157-283 119-276 (558)
284 1qap_A Quinolinic acid phospho 47.6 52 0.0018 32.0 7.9 115 270-419 157-281 (296)
285 3nwr_A A rubisco-like protein; 47.6 22 0.00074 36.7 5.5 139 243-417 174-318 (432)
286 3o63_A Probable thiamine-phosp 47.6 25 0.00087 32.9 5.6 63 330-416 143-217 (243)
287 2r14_A Morphinone reductase; H 47.2 48 0.0016 32.9 7.7 186 158-396 167-366 (377)
288 2tps_A Protein (thiamin phosph 47.1 46 0.0016 29.3 6.9 53 344-416 134-198 (227)
289 2hmc_A AGR_L_411P, dihydrodipi 47.0 31 0.0011 34.0 6.3 49 331-379 103-160 (344)
290 3fa4_A 2,3-dimethylmalate lyas 46.8 95 0.0032 30.4 9.7 102 158-280 96-205 (302)
291 3oa3_A Aldolase; structural ge 46.7 98 0.0034 30.3 9.7 189 61-284 22-232 (288)
292 1vcv_A Probable deoxyribose-ph 46.5 67 0.0023 30.1 8.2 74 331-420 65-152 (226)
293 1zco_A 2-dehydro-3-deoxyphosph 45.9 1.6E+02 0.0053 27.9 10.8 159 244-422 35-233 (262)
294 4h17_A Hydrolase, isochorismat 45.8 37 0.0012 30.4 6.1 79 165-267 117-195 (197)
295 3zwt_A Dihydroorotate dehydrog 45.5 77 0.0026 31.4 8.9 120 131-288 221-357 (367)
296 3c3w_A Two component transcrip 45.4 55 0.0019 28.4 7.1 64 329-395 33-100 (225)
297 3vcn_A Mannonate dehydratase; 45.3 1.3E+02 0.0044 30.1 10.6 138 154-295 150-337 (425)
298 4avf_A Inosine-5'-monophosphat 44.9 33 0.0011 35.2 6.3 54 343-416 238-296 (490)
299 1nvm_A HOA, 4-hydroxy-2-oxoval 44.8 73 0.0025 30.9 8.5 111 160-303 96-219 (345)
300 1vcf_A Isopentenyl-diphosphate 44.6 11 0.00039 36.1 2.8 87 306-417 112-211 (332)
301 1jbe_A Chemotaxis protein CHEY 44.6 1E+02 0.0034 23.4 9.1 64 329-395 35-104 (128)
302 3gka_A N-ethylmaleimide reduct 44.4 87 0.003 31.0 9.1 180 158-396 162-354 (361)
303 2pz0_A Glycerophosphoryl diest 44.3 28 0.00096 31.9 5.2 122 270-429 128-250 (252)
304 1mb3_A Cell division response 44.3 61 0.0021 24.4 6.4 62 329-393 31-98 (124)
305 3grc_A Sensor protein, kinase; 44.2 76 0.0026 24.6 7.1 63 329-394 36-105 (140)
306 1ka9_F Imidazole glycerol phos 44.1 67 0.0023 28.8 7.6 184 158-416 32-223 (252)
307 1icp_A OPR1, 12-oxophytodienoa 43.4 48 0.0016 32.8 7.1 185 158-396 168-369 (376)
308 3dmp_A Uracil phosphoribosyltr 43.4 31 0.0011 32.1 5.4 48 158-223 144-193 (217)
309 2gou_A Oxidoreductase, FMN-bin 43.3 59 0.002 32.0 7.7 183 158-396 162-360 (365)
310 3q9s_A DNA-binding response re 43.2 58 0.002 29.0 7.0 78 329-409 67-153 (249)
311 4adt_A Pyridoxine biosynthetic 42.6 46 0.0016 32.4 6.7 54 160-218 31-84 (297)
312 1ydn_A Hydroxymethylglutaryl-C 42.2 43 0.0015 31.5 6.3 50 151-212 150-199 (295)
313 1s4d_A Uroporphyrin-III C-meth 42.0 74 0.0025 29.8 7.9 92 193-291 25-126 (280)
314 3vnd_A TSA, tryptophan synthas 41.8 74 0.0025 30.3 7.9 56 359-415 83-152 (267)
315 1ypf_A GMP reductase; GUAC, pu 41.8 50 0.0017 31.9 6.8 61 336-417 108-176 (336)
316 2jk1_A HUPR, hydrogenase trans 41.6 66 0.0023 25.1 6.4 61 329-392 30-94 (139)
317 3jr2_A Hexulose-6-phosphate sy 41.4 36 0.0012 30.5 5.4 61 201-284 48-109 (218)
318 1a04_A Nitrate/nitrite respons 41.3 71 0.0024 27.1 7.0 79 329-410 37-125 (215)
319 4dad_A Putative pilus assembly 41.2 42 0.0014 26.4 5.2 63 331-395 53-120 (146)
320 1bf2_A Isoamylase; hydrolase, 41.2 1.7E+02 0.0058 31.4 11.4 109 152-263 201-372 (750)
321 3h5d_A DHDPS, dihydrodipicolin 41.2 45 0.0015 32.2 6.3 109 234-380 20-144 (311)
322 3n53_A Response regulator rece 41.1 36 0.0012 26.6 4.7 64 329-395 32-101 (140)
323 2gwr_A DNA-binding response re 40.9 31 0.0011 30.1 4.8 78 329-409 35-121 (238)
324 1kgs_A DRRD, DNA binding respo 40.7 1.2E+02 0.004 25.8 8.3 78 329-409 32-119 (225)
325 3nhm_A Response regulator; pro 40.3 1.2E+02 0.004 23.1 7.6 61 329-393 33-99 (133)
326 3kyj_B CHEY6 protein, putative 40.0 41 0.0014 26.5 5.0 64 329-394 45-113 (145)
327 3no5_A Uncharacterized protein 39.6 24 0.00082 34.1 4.1 56 153-216 27-82 (275)
328 2otd_A Glycerophosphodiester p 39.4 14 0.00046 33.7 2.3 62 346-428 184-245 (247)
329 1eix_A Orotidine 5'-monophosph 39.3 26 0.0009 32.4 4.2 42 320-368 18-64 (245)
330 2xwp_A Sirohydrochlorin cobalt 39.3 1.7E+02 0.0059 27.0 9.8 125 158-294 61-201 (264)
331 3ist_A Glutamate racemase; str 39.2 57 0.0019 31.0 6.6 165 202-387 20-216 (269)
332 1rqb_A Transcarboxylase 5S sub 39.1 3.7E+02 0.013 28.3 17.5 188 132-378 24-227 (539)
333 2o7s_A DHQ-SDH PR, bifunctiona 39.0 26 0.00088 35.9 4.5 92 328-419 12-125 (523)
334 2gjl_A Hypothetical protein PA 38.9 78 0.0027 30.1 7.6 41 331-375 127-177 (328)
335 1zcc_A Glycerophosphodiester p 38.5 34 0.0012 31.3 4.8 65 344-429 168-234 (248)
336 1eep_A Inosine 5'-monophosphat 38.4 1.7E+02 0.0057 28.8 10.1 47 158-217 153-199 (404)
337 3m07_A Putative alpha amylase; 38.1 43 0.0015 35.3 6.1 124 154-283 152-309 (618)
338 1bd3_D Uprtase, uracil phospho 38.1 43 0.0015 31.8 5.5 48 158-223 171-220 (243)
339 3r2g_A Inosine 5'-monophosphat 38.0 60 0.002 32.5 6.8 40 339-378 105-149 (361)
340 2w6r_A Imidazole glycerol phos 37.9 60 0.0021 29.4 6.4 40 333-375 33-79 (266)
341 2v82_A 2-dehydro-3-deoxy-6-pho 37.9 91 0.0031 27.3 7.3 88 329-417 15-107 (212)
342 3no3_A Glycerophosphodiester p 37.8 46 0.0016 30.4 5.6 117 272-429 116-235 (238)
343 3cu5_A Two component transcrip 37.7 74 0.0025 25.1 6.2 64 329-395 35-102 (141)
344 2ze0_A Alpha-glucosidase; TIM 37.6 48 0.0016 33.9 6.2 61 157-223 31-103 (555)
345 3c2e_A Nicotinate-nucleotide p 37.5 37 0.0013 32.8 5.1 66 199-291 185-253 (294)
346 1lt8_A Betaine-homocysteine me 37.1 17 0.00057 37.0 2.7 24 395-418 51-74 (406)
347 2jba_A Phosphate regulon trans 37.1 64 0.0022 24.4 5.5 63 330-395 33-101 (127)
348 1ua7_A Alpha-amylase; beta-alp 37.1 33 0.0011 33.6 4.8 107 153-263 14-170 (422)
349 2yyu_A Orotidine 5'-phosphate 37.0 31 0.0011 31.9 4.3 78 329-409 13-106 (246)
350 3ovp_A Ribulose-phosphate 3-ep 36.9 1.1E+02 0.0036 28.3 7.9 83 329-417 16-118 (228)
351 3hbl_A Pyruvate carboxylase; T 36.8 59 0.002 37.1 7.3 214 159-415 629-873 (1150)
352 3bre_A Probable two-component 36.7 84 0.0029 29.0 7.2 65 329-396 49-119 (358)
353 4af0_A Inosine-5'-monophosphat 36.6 63 0.0021 34.5 7.0 59 338-416 285-348 (556)
354 1tqx_A D-ribulose-5-phosphate 36.3 35 0.0012 31.7 4.5 54 158-221 19-73 (227)
355 4gqr_A Pancreatic alpha-amylas 36.3 33 0.0011 33.1 4.5 70 152-224 18-102 (496)
356 1p2f_A Response regulator; DRR 36.1 50 0.0017 28.1 5.2 77 329-410 31-117 (220)
357 3oa3_A Aldolase; structural ge 36.1 1.3E+02 0.0044 29.5 8.6 130 239-418 70-208 (288)
358 1ydo_A HMG-COA lyase; TIM-barr 35.9 48 0.0017 31.9 5.6 90 161-270 85-181 (307)
359 3h5t_A Transcriptional regulat 35.6 1.4E+02 0.0049 27.6 8.7 122 242-376 9-157 (366)
360 2ox4_A Putative mandelate race 35.5 2.8E+02 0.0095 27.0 11.0 85 333-419 223-319 (403)
361 1tqj_A Ribulose-phosphate 3-ep 35.4 18 0.0006 33.3 2.3 59 338-416 126-199 (230)
362 2b7n_A Probable nicotinate-nuc 35.3 46 0.0016 31.6 5.3 88 297-417 164-256 (273)
363 1vd6_A Glycerophosphoryl diest 35.2 42 0.0015 30.1 4.8 61 345-426 162-222 (224)
364 3mm4_A Histidine kinase homolo 35.2 1E+02 0.0035 26.5 7.1 64 329-392 92-174 (206)
365 1qpz_A PURA, protein (purine n 35.2 1E+02 0.0035 28.3 7.5 116 251-377 15-145 (340)
366 3q58_A N-acetylmannosamine-6-p 35.0 1.4E+02 0.0048 27.5 8.4 29 343-375 46-74 (229)
367 3hg3_A Alpha-galactosidase A; 34.8 1.6E+02 0.0055 29.9 9.5 110 158-285 37-165 (404)
368 3i42_A Response regulator rece 34.8 40 0.0014 25.8 4.0 50 329-381 33-88 (127)
369 1rcu_A Conserved hypothetical 34.6 2.2E+02 0.0076 25.9 9.6 124 243-396 42-170 (195)
370 4e38_A Keto-hydroxyglutarate-a 34.5 28 0.00097 32.8 3.7 54 142-217 126-179 (232)
371 3tj4_A Mandelate racemase; eno 34.4 3.3E+02 0.011 26.4 11.4 125 154-294 151-306 (372)
372 1vhn_A Putative flavin oxidore 34.2 93 0.0032 29.6 7.3 70 334-417 71-159 (318)
373 2ftp_A Hydroxymethylglutaryl-C 33.9 33 0.0011 32.6 4.1 90 160-269 86-182 (302)
374 4aie_A Glucan 1,6-alpha-glucos 33.7 56 0.0019 32.4 5.8 61 157-223 32-104 (549)
375 3uhf_A Glutamate racemase; str 33.6 51 0.0017 31.6 5.3 90 202-303 39-150 (274)
376 3lop_A Substrate binding perip 33.5 66 0.0022 29.5 5.9 92 278-376 134-228 (364)
377 1gox_A (S)-2-hydroxy-acid oxid 33.3 1E+02 0.0034 30.3 7.5 76 318-416 221-307 (370)
378 3o07_A Pyridoxine biosynthesis 33.3 1.4E+02 0.0049 29.5 8.4 53 320-380 13-78 (291)
379 2i14_A Nicotinate-nucleotide p 33.2 1.1E+02 0.0037 30.8 7.9 69 198-291 192-272 (395)
380 1ep3_A Dihydroorotate dehydrog 33.2 91 0.0031 28.8 6.9 17 359-375 230-246 (311)
381 1vyr_A Pentaerythritol tetrani 33.1 3.5E+02 0.012 26.4 17.6 33 343-375 261-299 (364)
382 3dxi_A Putative aldolase; TIM 33.1 2.1E+02 0.0071 27.9 9.7 179 152-393 20-212 (320)
383 1yxy_A Putative N-acetylmannos 33.1 1.1E+02 0.0036 27.3 7.1 33 343-375 98-138 (234)
384 2r91_A 2-keto-3-deoxy-(6-phosp 33.0 2.6E+02 0.009 26.2 10.1 108 152-294 15-129 (286)
385 1vc4_A Indole-3-glycerol phosp 33.0 1.7E+02 0.0057 27.3 8.7 55 343-416 75-133 (254)
386 3kjx_A Transcriptional regulat 33.0 2.2E+02 0.0074 26.1 9.4 122 243-376 11-153 (344)
387 2cw6_A Hydroxymethylglutaryl-C 32.9 55 0.0019 31.0 5.4 101 160-280 83-198 (298)
388 4djd_D C/Fe-SP, corrinoid/iron 32.8 58 0.002 32.2 5.7 74 343-417 91-186 (323)
389 3lte_A Response regulator; str 32.8 1.4E+02 0.0048 22.7 6.9 38 329-369 36-76 (132)
390 2nx9_A Oxaloacetate decarboxyl 32.6 4.3E+02 0.015 27.1 17.6 172 148-378 22-208 (464)
391 3p6l_A Sugar phosphate isomera 32.6 2.6E+02 0.0088 24.6 9.5 93 255-381 31-139 (262)
392 1dbt_A Orotidine 5'-phosphate 32.5 39 0.0013 31.0 4.2 37 329-368 12-53 (239)
393 3b0p_A TRNA-dihydrouridine syn 32.4 1.1E+02 0.0039 29.7 7.7 33 343-375 154-202 (350)
394 3lmz_A Putative sugar isomeras 32.2 2.3E+02 0.008 25.0 9.2 36 255-290 39-80 (257)
395 3i65_A Dihydroorotate dehydrog 32.2 73 0.0025 32.6 6.4 106 158-289 284-405 (415)
396 2j48_A Two-component sensor ki 32.1 70 0.0024 23.3 4.9 50 329-381 31-86 (119)
397 1jcn_A Inosine monophosphate d 32.0 99 0.0034 31.4 7.4 69 158-265 255-323 (514)
398 3fk4_A Rubisco-like protein; s 31.9 46 0.0016 34.1 4.9 146 243-417 153-300 (414)
399 2jfn_A Glutamate racemase; cel 31.9 3.3E+02 0.011 25.6 13.1 158 201-416 35-201 (285)
400 3cu2_A Ribulose-5-phosphate 3- 31.8 48 0.0016 31.1 4.7 65 329-417 135-216 (237)
401 3aj7_A Oligo-1,6-glucosidase; 31.7 69 0.0024 33.2 6.3 62 157-224 40-113 (589)
402 1me8_A Inosine-5'-monophosphat 31.4 1.7E+02 0.0058 29.8 9.1 46 158-216 242-288 (503)
403 2hsg_A Glucose-resistance amyl 31.4 94 0.0032 28.3 6.5 115 251-377 17-146 (332)
404 1tx2_A DHPS, dihydropteroate s 31.3 1.2E+02 0.004 29.5 7.5 21 244-264 61-81 (297)
405 3kru_A NADH:flavin oxidoreduct 31.3 1E+02 0.0035 30.2 7.2 94 158-266 144-249 (343)
406 3chv_A Prokaryotic domain of u 31.2 39 0.0013 32.8 4.1 76 132-216 9-86 (284)
407 2xed_A Putative maleate isomer 31.2 86 0.0029 29.4 6.4 123 273-418 80-214 (273)
408 3uw2_A Phosphoglucomutase/phos 31.1 3.6E+02 0.012 27.5 11.5 91 166-267 214-307 (485)
409 1m7x_A 1,4-alpha-glucan branch 31.0 93 0.0032 32.4 7.2 105 153-263 152-291 (617)
410 3tfx_A Orotidine 5'-phosphate 30.9 44 0.0015 31.9 4.3 44 329-375 13-61 (259)
411 2pcq_A Putative dihydrodipicol 30.9 66 0.0023 30.4 5.6 49 330-380 72-128 (283)
412 4ekj_A Beta-xylosidase; TIM-ba 30.8 3.9E+02 0.013 26.1 11.5 33 148-181 76-108 (500)
413 1m53_A Isomaltulose synthase; 30.8 73 0.0025 32.7 6.3 62 157-224 45-118 (570)
414 3k1d_A 1,4-alpha-glucan-branch 30.6 84 0.0029 34.1 6.9 104 154-263 261-399 (722)
415 3aty_A Tcoye, prostaglandin F2 30.6 87 0.003 31.1 6.6 99 158-267 175-287 (379)
416 2zic_A Dextran glucosidase; TI 30.4 69 0.0024 32.7 6.0 100 157-263 31-191 (543)
417 1f76_A Dihydroorotate dehydrog 30.2 1.1E+02 0.0038 29.1 7.0 42 358-418 275-318 (336)
418 1dcf_A ETR1 protein; beta-alph 30.2 93 0.0032 24.0 5.5 63 329-395 37-108 (136)
419 1q6o_A Humps, 3-keto-L-gulonat 30.1 46 0.0016 29.7 4.2 85 321-413 8-108 (216)
420 1jub_A Dihydroorotate dehydrog 30.1 95 0.0033 29.0 6.5 45 359-417 147-191 (311)
421 2ayx_A Sensor kinase protein R 30.1 1.9E+02 0.0064 25.8 8.2 63 329-394 159-225 (254)
422 1vhc_A Putative KHG/KDPG aldol 30.1 55 0.0019 30.2 4.7 51 144-216 111-161 (224)
423 4g9p_A 4-hydroxy-3-methylbut-2 30.1 35 0.0012 35.1 3.7 50 238-292 34-86 (406)
424 3ldv_A Orotidine 5'-phosphate 30.0 34 0.0012 32.6 3.4 43 329-375 36-83 (255)
425 2wnw_A Activated by transcript 30.0 1.9E+02 0.0066 29.1 9.1 93 200-295 124-240 (447)
426 2x5o_A UDP-N-acetylmuramoylala 29.9 18 0.00063 35.8 1.6 39 329-368 387-425 (439)
427 1vpx_A Protein (transaldolase 29.9 37 0.0013 32.1 3.6 42 250-292 125-174 (230)
428 3bg3_A Pyruvate carboxylase, m 29.7 44 0.0015 36.4 4.6 165 154-355 259-450 (718)
429 3hjz_A Transaldolase B; parach 29.7 23 0.00078 35.4 2.2 17 249-265 165-181 (334)
430 2h6r_A Triosephosphate isomera 29.6 47 0.0016 30.2 4.2 69 346-418 33-118 (219)
431 1vyr_A Pentaerythritol tetrani 29.5 1.8E+02 0.0063 28.4 8.7 100 158-267 162-272 (364)
432 1wx0_A Transaldolase; structur 29.5 47 0.0016 31.1 4.2 44 249-293 121-172 (223)
433 3rr1_A GALD, putative D-galact 29.5 2.2E+02 0.0075 28.3 9.3 129 157-294 127-287 (405)
434 3lab_A Putative KDPG (2-keto-3 29.4 27 0.00092 32.8 2.5 50 145-216 114-163 (217)
435 3lkb_A Probable branched-chain 29.3 36 0.0012 31.7 3.4 44 345-388 197-242 (392)
436 3m5v_A DHDPS, dihydrodipicolin 29.2 2.5E+02 0.0086 26.6 9.4 154 152-369 24-185 (301)
437 2oho_A Glutamate racemase; iso 29.2 98 0.0034 28.9 6.4 91 201-303 26-136 (273)
438 3vk5_A MOEO5; TIM barrel, tran 29.1 70 0.0024 31.4 5.5 43 332-375 52-101 (286)
439 1tv5_A Dhodehase, dihydroorota 28.9 1.2E+02 0.0043 30.9 7.6 58 343-419 321-403 (443)
440 1ub3_A Aldolase protein; schif 28.7 1.3E+02 0.0043 27.9 7.0 81 158-267 72-154 (220)
441 1eep_A Inosine 5'-monophosphat 28.7 1.2E+02 0.0041 29.9 7.2 36 343-378 162-202 (404)
442 1u83_A Phosphosulfolactate syn 28.6 49 0.0017 32.5 4.3 81 158-265 111-191 (276)
443 1ny5_A Transcriptional regulat 28.6 1.3E+02 0.0045 29.2 7.5 65 329-396 30-98 (387)
444 1l6w_A Fructose-6-phosphate al 28.6 40 0.0014 31.5 3.5 94 192-293 62-165 (220)
445 3kdn_A Rubisco, ribulose bisph 28.4 57 0.0019 33.8 4.9 144 244-417 169-315 (444)
446 1ykw_A Rubisco-like protein; b 28.4 46 0.0016 34.4 4.2 144 244-417 178-321 (435)
447 3out_A Glutamate racemase; str 28.3 1.1E+02 0.0037 29.0 6.5 155 202-373 22-204 (268)
448 1vcf_A Isopentenyl-diphosphate 28.3 93 0.0032 29.8 6.2 33 343-375 202-261 (332)
449 1o5o_A Uracil phosphoribosyltr 28.2 93 0.0032 29.0 6.0 45 158-219 151-195 (221)
450 2qv0_A Protein MRKE; structura 28.1 1.7E+02 0.0058 22.6 6.7 47 329-378 41-91 (143)
451 1lwj_A 4-alpha-glucanotransfer 28.0 1E+02 0.0036 30.1 6.6 61 157-224 23-95 (441)
452 3brq_A HTH-type transcriptiona 28.0 85 0.0029 27.5 5.4 88 287-377 21-108 (296)
453 3h5o_A Transcriptional regulat 27.9 77 0.0026 29.1 5.4 92 297-393 72-178 (339)
454 3sbf_A Mandelate racemase / mu 27.8 3.8E+02 0.013 26.3 10.6 137 157-295 135-311 (401)
455 3ijd_A Uncharacterized protein 27.6 1.4E+02 0.0048 29.4 7.4 105 158-290 105-214 (315)
456 2qr6_A IMP dehydrogenase/GMP r 27.5 77 0.0026 31.0 5.6 53 344-417 176-238 (393)
457 3ngj_A Deoxyribose-phosphate a 27.5 1.5E+02 0.0053 28.1 7.4 85 158-271 96-183 (239)
458 1zja_A Trehalulose synthase; s 27.5 91 0.0031 31.8 6.3 62 157-224 32-105 (557)
459 1xrs_A D-lysine 5,6-aminomutas 27.4 32 0.0011 36.2 2.9 55 249-304 166-243 (516)
460 2hsa_B 12-oxophytodienoate red 27.4 1.1E+02 0.0038 30.6 6.8 194 158-397 172-388 (402)
461 3exr_A RMPD (hexulose-6-phosph 27.4 45 0.0015 30.5 3.6 79 329-411 14-108 (221)
462 2nv1_A Pyridoxal biosynthesis 27.3 1.3E+02 0.0044 28.4 6.9 40 333-375 31-83 (305)
463 1xm3_A Thiazole biosynthesis p 27.3 1E+02 0.0035 28.8 6.1 32 344-375 145-183 (264)
464 3glc_A Aldolase LSRF; TIM barr 27.3 1.3E+02 0.0046 29.1 7.1 62 338-417 194-256 (295)
465 3ble_A Citramalate synthase fr 27.3 16 0.00056 35.6 0.7 122 162-303 101-238 (337)
466 1ccw_A Protein (glutamate muta 27.1 45 0.0015 28.2 3.3 47 242-291 40-89 (137)
467 3dhu_A Alpha-amylase; structur 27.1 1.2E+02 0.004 29.8 6.8 124 157-283 30-192 (449)
468 1ydn_A Hydroxymethylglutaryl-C 27.1 78 0.0027 29.7 5.3 91 160-269 82-178 (295)
469 1yio_A Response regulatory pro 27.0 44 0.0015 28.1 3.3 64 329-395 34-101 (208)
470 3cwn_A Transaldolase B; direct 26.6 64 0.0022 32.0 4.8 22 249-273 181-202 (337)
471 3bo9_A Putative nitroalkan dio 26.5 1.4E+02 0.0047 28.7 7.0 41 331-375 133-181 (326)
472 1p0k_A Isopentenyl-diphosphate 26.5 1E+02 0.0034 29.6 6.1 32 344-375 200-256 (349)
473 3eeg_A 2-isopropylmalate synth 26.4 64 0.0022 31.4 4.7 184 166-387 90-298 (325)
474 3a10_A Response regulator; pho 26.4 1.3E+02 0.0045 22.3 5.6 52 329-383 31-86 (116)
475 1z41_A YQJM, probable NADH-dep 26.4 2.1E+02 0.0072 27.4 8.4 66 343-416 154-247 (338)
476 1jfl_A Aspartate racemase; alp 26.4 50 0.0017 29.7 3.7 59 311-373 41-100 (228)
477 3ceu_A Thiamine phosphate pyro 26.3 1.3E+02 0.0044 26.8 6.4 62 329-415 95-169 (210)
478 2pkf_A Adenosine kinase; trans 26.3 49 0.0017 31.1 3.7 36 249-285 61-96 (334)
479 1a2o_A CHEB methylesterase; ba 26.1 1.5E+02 0.0052 28.6 7.3 65 328-395 34-103 (349)
480 3ovp_A Ribulose-phosphate 3-ep 26.0 83 0.0028 29.0 5.2 163 158-417 18-196 (228)
481 3iix_A Biotin synthetase, puta 26.0 1E+02 0.0034 28.9 5.8 50 149-209 80-129 (348)
482 4a29_A Engineered retro-aldol 26.0 1.5E+02 0.0053 28.6 7.2 56 342-416 72-131 (258)
483 3tsm_A IGPS, indole-3-glycerol 25.8 1.5E+02 0.005 28.5 7.0 32 343-374 89-124 (272)
484 3hh1_A Tetrapyrrole methylase 25.8 78 0.0027 25.8 4.5 95 172-285 6-109 (117)
485 3zwt_A Dihydroorotate dehydrog 25.8 2.4E+02 0.0083 27.8 8.8 69 334-416 164-252 (367)
486 2y7e_A 3-keto-5-aminohexanoate 25.7 41 0.0014 32.7 3.2 56 153-216 31-86 (282)
487 1dbt_A Orotidine 5'-phosphate 25.6 72 0.0025 29.2 4.7 45 201-267 45-89 (239)
488 3luf_A Two-component system re 25.6 1.5E+02 0.0051 26.7 6.8 65 329-395 154-224 (259)
489 1uok_A Oligo-1,6-glucosidase; 25.6 88 0.003 31.9 5.8 61 157-223 31-103 (558)
490 3gr7_A NADPH dehydrogenase; fl 25.4 1.9E+02 0.0066 28.0 7.9 64 344-416 155-247 (340)
491 1jub_A Dihydroorotate dehydrog 25.3 1.7E+02 0.006 27.2 7.4 41 359-418 229-271 (311)
492 3m47_A Orotidine 5'-phosphate 25.3 1.5E+02 0.0052 27.2 6.8 68 201-290 54-122 (228)
493 3inp_A D-ribulose-phosphate 3- 25.3 4.3E+02 0.015 24.8 10.6 166 158-417 41-222 (246)
494 3rcy_A Mandelate racemase/muco 25.2 5.2E+02 0.018 25.8 11.3 127 157-294 148-312 (433)
495 3tji_A Mandelate racemase/muco 25.2 4.4E+02 0.015 26.2 10.7 136 157-294 156-331 (422)
496 1h7n_A 5-aminolaevulinic acid 25.1 75 0.0026 32.1 5.0 81 158-264 244-327 (342)
497 2zvi_A 2,3-diketo-5-methylthio 25.0 1E+02 0.0034 31.8 6.0 138 244-417 167-313 (425)
498 2pju_A Propionate catabolism o 25.0 2.4E+02 0.0083 26.1 8.2 121 269-425 48-169 (225)
499 1h1y_A D-ribulose-5-phosphate 24.9 2.8E+02 0.0094 24.8 8.4 84 329-418 18-120 (228)
500 2r14_A Morphinone reductase; H 24.9 1.5E+02 0.0051 29.3 7.1 33 343-375 265-304 (377)
No 1
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=100.00 E-value=6e-157 Score=1154.65 Aligned_cols=331 Identities=44% Similarity=0.720 Sum_probs=313.4
Q ss_pred CCCCCcCCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcC
Q 014017 92 AGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVG 170 (432)
Q Consensus 92 ~g~p~~~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~G 170 (432)
.|||.+.|++. +|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++|
T Consensus 2 ~~tp~~~~~p~-~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lG 79 (337)
T 1w5q_A 2 SFTPANRAYPY-TRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSID-QLLIEAEEWVALG 79 (337)
T ss_dssp ----CCCCTTT-CCTTTTTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHH-HHHHHHHHHHHTT
T ss_pred CCCccCCCCCC-CCCCcCCCChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCC
Confidence 48999999987 7999999999999999999999999999999999986 6899999999999997 6999999999999
Q ss_pred CCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHH
Q 014017 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCK 250 (432)
Q Consensus 171 I~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak 250 (432)
|++|+|||++|+++||+.||+|||+||++|||||+||++||||+|||||||||||+||||||++++|.|+||+||++|+|
T Consensus 80 i~~v~LFgv~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~L~k 159 (337)
T 1w5q_A 80 IPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVCLCEFTTHGQCGILDDDGYVLNDVSIDVLVR 159 (337)
T ss_dssp CCEEEEEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCBCHHHHHHHHHH
T ss_pred CCEEEEecCCCcccCCcccCccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCcceeeCCCCcCccHHHHHHHHH
Confidence 99999999878777999999999999999999999999999999999999999999999999976899999999999999
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCC--CCcccccccccCC
Q 014017 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRF--GDKKTYVIRVIEL 328 (432)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~--gDRktYQmd~~~~ 328 (432)
|||+||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+| |||||||||
T Consensus 160 ~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~f~~GDrktYQmd---- 235 (337)
T 1w5q_A 160 QALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNRATYQMD---- 235 (337)
T ss_dssp HHHHHHHTTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEEEEEEEBCCGGGHHHHHC----------CGGGTSBC----
T ss_pred HHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCceeehhHHHHHHHHHHHHHHHhcCCcccCCCCccccCCC----
Confidence 99999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ik 408 (432)
|+|++|||||+++|++||||||||||||+|||||+++|++|++||+||||||||||||||+++||+| +++++|+|++||
T Consensus 236 paN~~EAlrE~~~Di~EGAD~vMVKPal~YLDIir~vk~~~~~PvaaYqVSGEYAMikaAa~~GwiD-~~~v~Esl~~~k 314 (337)
T 1w5q_A 236 PANSDEALHEVAADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLA-ESVILESLTAFK 314 (337)
T ss_dssp TTCSHHHHHHHHHHHHTTCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSC-TTHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhHHhCCCEEEEcCCCchHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHcCCcc-HHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HcCccEeehhcHHHHHHHHhc
Q 014017 409 RAGADIILTYFALQAARCLCG 429 (432)
Q Consensus 409 RAGAd~IiTYfA~~~a~wL~~ 429 (432)
|||||+||||||+|+|+||++
T Consensus 315 RAGAd~IiTYfA~~~a~~L~~ 335 (337)
T 1w5q_A 315 RAGADGILTYFAKQAAEQLRR 335 (337)
T ss_dssp HHTCSEEEETTHHHHHHHHHC
T ss_pred hcCCCEEeeecHHHHHHHHhc
Confidence 999999999999999999986
No 2
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=100.00 E-value=7e-156 Score=1152.34 Aligned_cols=333 Identities=54% Similarity=0.878 Sum_probs=325.7
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHH
Q 014017 89 AAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARD 168 (432)
Q Consensus 89 ~~p~g~p~~~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~ 168 (432)
.+-.|+|.++++ +|+||||+++++|+|++||+|+++||||||||+||++++||+|||||||||+| .|+++++++++
T Consensus 9 ~~~~~~~~v~~~---~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~sid-~l~~~~~~~~~ 84 (356)
T 3obk_A 9 NNNYGEVWLPIQ---ARPRRNRKNRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSME-DLLKEVGEARS 84 (356)
T ss_dssp ECTTSCEECCCS---CCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEECTTSTTCEEECHH-HHHHHHHHHHH
T ss_pred cCCCCCEeeccC---CCCCcCCCCHHHHHHHhhcCCCHHHceeeEEEecCCCCcccCCCCCceEECHH-HHHHHHHHHHH
Confidence 567899999655 99999999999999999999999999999999999878899999999999997 69999999999
Q ss_pred cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecC-CCccccHHHHHH
Q 014017 169 VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRE-DGVIMNDETVHQ 247 (432)
Q Consensus 169 ~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~-~g~IdND~Tl~~ 247 (432)
+||++|+|||++++++||+.||+|||+||++|||||.||++||||+|||||||||||+||||||+++ +|.|+||+||++
T Consensus 85 lGi~av~LFgv~~p~~KD~~gs~A~~~~g~v~rAir~iK~~~P~l~VitDVcLc~YT~HGHcGil~~~~g~V~ND~Tl~~ 164 (356)
T 3obk_A 85 YGIKAFMLFPKVDDELKSVMAEESYNPDGLLPRAIMALKEAFPDVLLLADVALDPYSSMGHDGVVDEQSGKIVNDLTVHQ 164 (356)
T ss_dssp TTCCEEEEEEECCGGGCBSSCGGGGCTTSHHHHHHHHHHHHSTTCEEEEEECSGGGBTTCCSSCBCTTTCCBCHHHHHHH
T ss_pred CCCCEEEEecCCCcccCCcccccccCCCChHHHHHHHHHHHCCCCEEEEeeccccccCCCcceeeeCCCCCCCCHHHHHH
Confidence 9999999999988889999999999999999999999999999999999999999999999999976 499999999999
Q ss_pred HHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCC-CCCCCccccccccc
Q 014017 248 LCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN-PRFGDKKTYVIRVI 326 (432)
Q Consensus 248 Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sa-p~~gDRktYQmd~~ 326 (432)
|++|||+||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+ |+||||||||||
T Consensus 165 Lak~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~IMsYsaKyASafYGPFRdAa~Sa~p~~GDRktYQmd-- 242 (356)
T 3obk_A 165 LCKQAITLARAGADMVCPSDMMDGRVSAIRESLDMEGCTDTSILAYSCKYASSFYGPFRDALDSHMVGGTDKKTYQMD-- 242 (356)
T ss_dssp HHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCSTTHHHHHHHTCCCSTTCCSTTTSBC--
T ss_pred HHHHHHHHHHcCCCeEeccccccCHHHHHHHHHHHCCCCCcceehhHHHHhhhccchhhHHhcCCCCCCCCccccCCC--
Confidence 99999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH
Q 014017 327 ELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406 (432)
Q Consensus 327 ~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ 406 (432)
|+|++|||||+++|++||||||||||||+|||||+++|++|++||+||||||||||||||+++||||++++++|+|++
T Consensus 243 --paN~~EAlrE~~lDi~EGAD~vMVKPal~YLDIi~~vk~~~~~PvaaYqVSGEYAMikAAa~~GwiD~~~~v~Esl~~ 320 (356)
T 3obk_A 243 --PSNSREAEREAEADASEGADMLMVKPGLPYLDVLAKIREKSKLPMVAYHVSGEYAMLKAAAEKGYISEKDTVLEVLKS 320 (356)
T ss_dssp --TTCSHHHHHHHHHHHHTTCSEEEEESSGGGHHHHHHHHHHCSSCEEEEECHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhhHhcCCCEEEecCCCcHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCccEeehhcHHHHHHHHhc
Q 014017 407 LRRAGADIILTYFALQAARCLCG 429 (432)
Q Consensus 407 ikRAGAd~IiTYfA~~~a~wL~~ 429 (432)
|||||||+||||||+|+|+||++
T Consensus 321 ~kRAGAd~IiTYfA~~~a~~L~~ 343 (356)
T 3obk_A 321 FRRAGADAVATYYAKEAAKWMVE 343 (356)
T ss_dssp HHHHTCSEEEETTHHHHHHHHHH
T ss_pred HHHcCCCEEehhhHHHHHHHHHh
Confidence 99999999999999999999985
No 3
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=100.00 E-value=8.7e-156 Score=1143.20 Aligned_cols=325 Identities=52% Similarity=0.868 Sum_probs=313.1
Q ss_pred CcCCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeE
Q 014017 96 VVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSV 174 (432)
Q Consensus 96 ~~~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv 174 (432)
.++++++.+|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|
T Consensus 3 ~~~~l~~~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lGi~~v 81 (328)
T 1w1z_A 3 QLDLLNIVHRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTID-RAVEECKELYDLGIQGI 81 (328)
T ss_dssp -------CCCGGGGTSSHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEEEEHH-HHHHHHHHHHHHTCCEE
T ss_pred ccCcCCcccCCCcCCCChHHHHHHhcCcCCHHHceeeEEEecCCCCccccCCCCCeeEeCHH-HHHHHHHHHHHCCCCEE
Confidence 367888899999999999999999999999999999999999986 7899999999999997 69999999999999999
Q ss_pred EEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHH
Q 014017 175 VLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVS 254 (432)
Q Consensus 175 ~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs 254 (432)
+|||+ |+ .||+.||+|||+||++|||||+||++||||+|||||||||||+||||||++ +|.|+||+||++|+||||+
T Consensus 82 ~LFgv-p~-~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~L~k~Als 158 (328)
T 1w1z_A 82 DLFGI-PE-QKTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVK-DGIILNDETVEVLQKMAVS 158 (328)
T ss_dssp EEEEC-CS-SCCSSCGGGGCTTSHHHHHHHHHHHHSTTSEEEEEECSTTTSTTSCSSEES-SSCEEHHHHHHHHHHHHHH
T ss_pred EEECC-CC-CCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccCCCCCceeecc-CCcCccHHHHHHHHHHHHH
Confidence 99996 64 599999999999999999999999999999999999999999999999996 7999999999999999999
Q ss_pred HHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHH
Q 014017 255 QARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYRE 334 (432)
Q Consensus 255 ~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~E 334 (432)
||+||||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+|||||||||| |+|++|
T Consensus 159 ~A~AGADiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~fGDrktYQmd----paN~~E 234 (328)
T 1w1z_A 159 HAEAGADFVSPSDMMDGRIGAIREALDETDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQMN----PANTEE 234 (328)
T ss_dssp HHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTSEEEEEEEEBCCTTCHHHHHHTTCCCCCSCSTTTSBC----TTCSHH
T ss_pred HHHcCCCeEecccccccHHHHHHHHHHhCCCCCceeeehhHHHhhhccchHHHHhccCCCCCCccccCCC----CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 335 ALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 335 Alre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
||||+++|++||||||||||||+|||||+++|++|++|++||||||||||||||+++||+|++++++|+|++|||||||+
T Consensus 235 AlrE~~~Di~EGAD~vMVKPal~YLDIir~vk~~~~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~ 314 (328)
T 1w1z_A 235 AMKEVELDIVEGADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMMESLLCMKRAGADI 314 (328)
T ss_dssp HHHHHHHHHHHTCSEEEEESCGGGHHHHHHHHHHHCSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHhhHHhCCCEEEEcCCCchHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhcHHHHHHHHh
Q 014017 415 ILTYFALQAARCLC 428 (432)
Q Consensus 415 IiTYfA~~~a~wL~ 428 (432)
||||||+|+|+||+
T Consensus 315 IiTYfA~~~a~~L~ 328 (328)
T 1w1z_A 315 IFTYYAKEAAKKLR 328 (328)
T ss_dssp EEETTHHHHHHHHC
T ss_pred EeeecHHHHHHhhC
Confidence 99999999999994
No 4
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=100.00 E-value=3.5e-153 Score=1122.99 Aligned_cols=319 Identities=46% Similarity=0.749 Sum_probs=312.7
Q ss_pred CCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeec
Q 014017 101 PLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK 179 (432)
Q Consensus 101 ~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgv 179 (432)
+|.+|+||||+|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||+
T Consensus 2 ~m~~R~RRlR~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lGi~~v~LFgv 80 (323)
T 1l6s_A 2 DLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEK-HLAREIERIANAGIRSVMTFGI 80 (323)
T ss_dssp CCSCCGGGGGSSHHHHHHHCCCCCCGGGEEEEEEEETTCSSCEECTTSTTCEEEEGG-GHHHHHHHHHHHTCCEEEEEEE
T ss_pred cccccCCccCCChHHHHHhhcCcCCHHHceeeEEEecCCCCccccCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEEeCC
Confidence 4578999999999999999999999999999999999986 7899999999999997 6999999999999999999997
Q ss_pred CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcC
Q 014017 180 VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAG 259 (432)
Q Consensus 180 i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AG 259 (432)
|+ .||+.||+|||+||++|||||+||++||||+|||||||||||+||||||++ +|.|+||+||++|+||||+||+||
T Consensus 81 -p~-~Kd~~gs~A~~~~g~v~rair~iK~~~pdl~vitDvcLc~YT~HGHcGil~-~g~V~ND~Tl~~Lak~Als~A~AG 157 (323)
T 1l6s_A 81 -SH-HTDETGSDAWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLC-EHGVDNDATLENLGKQAVVAAAAG 157 (323)
T ss_dssp -CS-SCBSSCGGGGSTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCCSSCBC-SSSBCHHHHHHHHHHHHHHHHHHT
T ss_pred -CC-CCCccccccCCCCCcHHHHHHHHHHHCCCeEEEEeeeccccCCCCceEecc-CCcCccHHHHHHHHHHHHHHHHcC
Confidence 64 599999999999999999999999999999999999999999999999995 799999999999999999999999
Q ss_pred CCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHH
Q 014017 260 ADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEA 339 (432)
Q Consensus 260 ADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~ 339 (432)
||||||||||||||++||++||++||+||+|||||+||||+||||||||++|+|+ ||||||||| |+|++|||||+
T Consensus 158 AdiVAPSdMMDGrV~aIR~aLd~~G~~~v~ImsYsaKyASafYGPFRdAa~Sap~-GDRktYQmd----paN~~EAlre~ 232 (323)
T 1l6s_A 158 ADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALK-GDRKSYQMN----PMNRREAIRES 232 (323)
T ss_dssp CSEEEECSCCTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCCHHHHHHHTCCCS-SCCTTTSBC----TTCHHHHHHHH
T ss_pred CCeEecccccccHHHHHHHHHHhCCCCCceeeehhHHHhHHhhHHHHHHhcCCCC-CCccccCCC----CCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 999999999 99999999999
Q ss_pred HhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 340 QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 340 ~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
++|++|||||||||||++|||||+++|++|++|++||||||||||||+|+++||+|++++++|+|++|||||||+|||||
T Consensus 233 ~~Di~EGAD~vMVKPal~YLDIi~~vk~~~~~P~aaYqVSGEYAMikaAa~~GwiD~~~~vlEsl~~~kRAGAd~IiTYf 312 (323)
T 1l6s_A 233 LLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYF 312 (323)
T ss_dssp HHHHHTTCSBEEEESCTTCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEETT
T ss_pred HhhHHhCCceEEEecCcchhHHHHHHHHhcCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEEeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 014017 420 ALQAARCLC 428 (432)
Q Consensus 420 A~~~a~wL~ 428 (432)
|+|+|+||.
T Consensus 313 A~~~a~~~~ 321 (323)
T 1l6s_A 313 ALDLAEKKI 321 (323)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 999999985
No 5
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=100.00 E-value=1.5e-151 Score=1118.88 Aligned_cols=328 Identities=35% Similarity=0.541 Sum_probs=318.3
Q ss_pred CCCCCCCCCCCCCCChhhHhhhccCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEE
Q 014017 98 PSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVL 176 (432)
Q Consensus 98 ~~~~~~~R~RRlR~~~~~R~l~~Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~L 176 (432)
.|++...++++.+.|+++|+|++||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|
T Consensus 10 ~~~~~~~~l~~g~~~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~lGi~~v~L 88 (342)
T 1h7n_A 10 EPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVN-RLKDYLKPLVAKGLRSVIL 88 (342)
T ss_dssp CCCCGGGCCGGGSSSHHHHHHTCSSCCCGGGEEEEEEEESSTTCEEECTTSTTCEEECHH-HHHHHHHHHHHTTCCEEEE
T ss_pred CCCCcccccccccCCHHHHHHHhcCcCCHHHceeeEEEecCCCCceeCCCCCCceeeCHH-HHHHHHHHHHHCCCCEEEE
Confidence 3456778999999999999999999999999999999999986 7999999999999997 6999999999999999999
Q ss_pred eecCCCC-CCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHH
Q 014017 177 FPKVPDA-LKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQ 255 (432)
Q Consensus 177 Fgvi~~~-~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~ 255 (432)
||++|+. .||+.||+|||+||++|||||+||++||||+|||||||||||+||||||++++|.|+||+||++|+||||+|
T Consensus 89 Fgv~~~~~~KD~~gs~A~~~~g~v~rair~iK~~~pdl~VitDvcLc~YT~HGHcGil~~~g~V~ND~Tl~~Lak~Als~ 168 (342)
T 1h7n_A 89 FGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNY 168 (342)
T ss_dssp EEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSSBCHHHHHHHHHHHHHHH
T ss_pred ecccCccCCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHH
Confidence 9986642 799999999999999999999999999999999999999999999999997689999999999999999999
Q ss_pred HHcCCCeecCCCCCCchHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHH
Q 014017 256 ARAGADVVSPSDMMDGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYRE 334 (432)
Q Consensus 256 A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~E 334 (432)
|+||||||||||||||||++||++||++|| ++|+|||||+||||+||||||||++|+|+|||||||||| |+|++|
T Consensus 169 A~AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmd----paN~~E 244 (342)
T 1h7n_A 169 AKAGAHCVAPSDMIDGRIRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQLP----PAGRGL 244 (342)
T ss_dssp HHHTCSEEEECCCCTTHHHHHHHHHHHTTCTTTCEEEEEEEEBCSSCCHHHHHHHTCCCSSSCSTTTSBC----TTCHHH
T ss_pred HHcCCCeeecccccccHHHHHHHHHHHCCCccCceEeechHHHhHHhhHHHHHHHhcCCCCCCccccCCC----CCCHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc
Q 014017 335 ALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 335 Alre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd 413 (432)
||||+++|++|||||||||||++|||||+++|++| ++||+||||||||||||+|+++||+|++++++|+|++|||||||
T Consensus 245 Alre~~~Di~EGAD~vMVKPal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd 324 (342)
T 1h7n_A 245 ARRALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGAR 324 (342)
T ss_dssp HHHHHHHHHHTTCSEEEEESSGGGHHHHHHHHHHTTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhhHHhCCCeEEEecCccHHHHHHHHHHhccCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred EeehhcHHHHHHHHhcc
Q 014017 414 IILTYFALQAARCLCGE 430 (432)
Q Consensus 414 ~IiTYfA~~~a~wL~~~ 430 (432)
+||||||+|+|+||+++
T Consensus 325 ~IiTYfA~~~a~~L~~~ 341 (342)
T 1h7n_A 325 LIITYLAPEFLDWLDEE 341 (342)
T ss_dssp EEEETTHHHHHHHTTC-
T ss_pred EEEeecHHHHHHHhhcc
Confidence 99999999999999863
No 6
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=100.00 E-value=4e-151 Score=1111.83 Aligned_cols=323 Identities=39% Similarity=0.685 Sum_probs=267.4
Q ss_pred CCCCCCCCCCCChhhHhhhc-cCCCCCCCceeeEEEeeCCC-CcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEee
Q 014017 101 PLSRRPRRNRKSPAMRASFQ-ETNLSPANFVYPLFIHEGEE-DTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP 178 (432)
Q Consensus 101 ~~~~R~RRlR~~~~~R~l~~-Et~Ls~~~LI~PlFV~eg~~-~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFg 178 (432)
+...++++.+.|+++|+|++ ||+|+++||||||||+||++ ++||+|||||||||+| .|++++++++++||++|+|||
T Consensus 2 ~~~~~l~~g~~~~~~R~lv~~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid-~l~~~~~~~~~~Gi~~v~LFg 80 (330)
T 1pv8_A 2 QPQSVLHSGYLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVK-RLEEMLRPLVEEGLRCVLIFG 80 (330)
T ss_dssp ---------CCCHHHHHHHTTTTCCCGGGEEEEEEECSCTTCEEECSSSTTCEEECHH-HHHHHHHHHHHHTCCEEEEEE
T ss_pred CcccccccccCCHHHHHHHhcCCccCHHHceeeEEEecCCCCccccCCCCCceeecHH-HHHHHHHHHHHCCCCEEEEec
Confidence 34568999999999999999 99999999999999999985 7999999999999997 699999999999999999999
Q ss_pred cCCCCC-CCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH
Q 014017 179 KVPDAL-KSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR 257 (432)
Q Consensus 179 vi~~~~-Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~ 257 (432)
+ |++. ||+.||+|||+||++|||||+||++||||+|||||||||||+||||||++++|.|+||+||++|+||||+||+
T Consensus 81 v-p~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~HGHcGil~~~g~v~ND~Tl~~La~~Als~A~ 159 (330)
T 1pv8_A 81 V-PSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHCGLLSENGAFRAEESRQRLAEVALAYAK 159 (330)
T ss_dssp C-C--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC---------------CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCCceeEECCCCcCccHHHHHHHHHHHHHHHH
Confidence 7 6543 9999999999999999999999999999999999999999999999999767999999999999999999999
Q ss_pred cCCCeecCCCCCCchHHHHHHHHHHCCCcc-ceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHH
Q 014017 258 AGADVVSPSDMMDGRVGAIRAALDAEGFQH-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREAL 336 (432)
Q Consensus 258 AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~-v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAl 336 (432)
||||||||||||||||++||++||++||+| |+|||||+||||+||||||||++|+|+|||||||||| |+|++|||
T Consensus 160 AGAdiVAPSdMMDGrV~aIR~aLd~~G~~~~v~ImsYsaKyASafYGPFRdAa~Sap~~GDRktYQmd----paN~~EAl 235 (330)
T 1pv8_A 160 AGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQLP----PGARGLAL 235 (330)
T ss_dssp HTCSEEEECC--CCHHHHHHHHHHHTTCTTTCEEBCCCEECCCGGGHHHHHCC-------------CC----TTCHHHHH
T ss_pred cCCCeeecccccccHHHHHHHHHHhCCCcCCceEeehhHHHhHhhhhHHHHHHhcCCCCCCccccCCC----CCCHHHHH
Confidence 999999999999999999999999999998 9999999999999999999999999999999999999 99999999
Q ss_pred HHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 337 VEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 337 re~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
||+++|++|||||||||||++|||||+++|++| ++||+||||||||||||+|+++||+|++++++|+|++|||||||+|
T Consensus 236 re~~~Di~EGAD~vMVKPal~YLDIi~~vk~~~p~~P~aaYqVSGEYAMikaAa~~GwiD~~~~v~Esl~~~kRAGAd~I 315 (330)
T 1pv8_A 236 RAVDRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADII 315 (330)
T ss_dssp HHHHHHHHTTCSBEEEESCGGGHHHHHHHHHHSTTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHhhHHhCCceEEEecCccHHHHHHHHHHhcCCCCeEEEEcCcHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred ehhcHHHHHHHHhc
Q 014017 416 LTYFALQAARCLCG 429 (432)
Q Consensus 416 iTYfA~~~a~wL~~ 429 (432)
|||||+|+|+||++
T Consensus 316 iTYfA~~~a~~L~~ 329 (330)
T 1pv8_A 316 ITYYTPQLLQWLKE 329 (330)
T ss_dssp EETTHHHHHHHTTT
T ss_pred eeecHHHHHHHhcc
Confidence 99999999999975
No 7
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=96.23 E-value=0.14 Score=45.39 Aligned_cols=162 Identities=19% Similarity=0.246 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.++.++.+.+ |+..+-+ |. +- +-.+|+ ..|+.||+.+|++-|+.|.-+. |
T Consensus 14 ~~~~~~~~~~~-~v~~iev-~~-~~----------~~~~g~--~~i~~l~~~~~~~~i~~~l~~~-------------d- 64 (207)
T 3ajx_A 14 AALELAGKVAE-YVDIIEL-GT-PL----------IKAEGL--SVITAVKKAHPDKIVFADMKTM-------------D- 64 (207)
T ss_dssp HHHHHHHHHGG-GCSEEEE-CH-HH----------HHHHCT--HHHHHHHHHSTTSEEEEEEEEC-------------S-
T ss_pred HHHHHHHHhhc-cCCEEEE-Cc-HH----------HHhhCH--HHHHHHHHhCCCCeEEEEEEec-------------C-
Confidence 46777777766 8777655 32 21 112233 4789999999998888877531 0
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM-DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
| -+| .+ -..+++|||.|.-.... |..+..+++.+.+.|.. +.+ | +
T Consensus 65 -i--~~~---~~---~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~-~gv--------~-~--------------- 110 (207)
T 3ajx_A 65 -A--GEL---EA---DIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKG-VVV--------D-L--------------- 110 (207)
T ss_dssp -C--HHH---HH---HHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCE-EEE--------E-C---------------
T ss_pred -c--cHH---HH---HHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCc-eEE--------E-E---------------
Confidence 1 122 22 24567999999633333 36788888888777752 222 0 0
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEE-EE------cCCCchh-HHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADIL-LV------KPGLPYL-DVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l-MV------KPal~YL-DII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
+. +.|..|.+.++. +.|+|+| +. +++..+. +-|++++.. ++|+.+
T Consensus 111 ------~s----~~~p~~~~~~~~---~~g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v------------- 163 (207)
T 3ajx_A 111 ------IG----IEDKATRAQEVR---ALGAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSV------------- 163 (207)
T ss_dssp ------TT----CSSHHHHHHHHH---HTTCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEE-------------
T ss_pred ------ec----CCChHHHHHHHH---HhCCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEE-------------
Confidence 12 445566444432 2378988 43 3555566 444444433 677753
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
-|-++.+ ....+.+||||.|+
T Consensus 164 --~GGI~~~-----~~~~~~~aGad~vv 184 (207)
T 3ajx_A 164 --AGGVKVA-----TIPAVQKAGAEVAV 184 (207)
T ss_dssp --ESSCCGG-----GHHHHHHTTCSEEE
T ss_pred --ECCcCHH-----HHHHHHHcCCCEEE
Confidence 3344433 45556789999986
No 8
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=95.78 E-value=0.13 Score=47.93 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++++.++.+++.|++.|-+ . .|++. ..+.|+.++++||++.+-+++.+
T Consensus 30 ~~~~~~~al~~gGv~~iel-~-----~k~~~----------~~~~i~~l~~~~~~l~vgaGtvl---------------- 77 (224)
T 1vhc_A 30 DILPLADTLAKNGLSVAEI-T-----FRSEA----------AADAIRLLRANRPDFLIAAGTVL---------------- 77 (224)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----TTSTT----------HHHHHHHHHHHCTTCEEEEESCC----------------
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----ccCch----------HHHHHHHHHHhCcCcEEeeCcEe----------------
Confidence 5899999999999997766 2 23322 23589999999999888765422
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
+|| ++-.-.++|||.|- |. .|-.| ++.+- +.|-
T Consensus 78 --~~d--------~~~~A~~aGAd~v~~p~--~d~~v--~~~ar-~~g~------------------------------- 111 (224)
T 1vhc_A 78 --TAE--------QVVLAKSSGADFVVTPG--LNPKI--VKLCQ-DLNF------------------------------- 111 (224)
T ss_dssp --SHH--------HHHHHHHHTCSEEECSS--CCHHH--HHHHH-HTTC-------------------------------
T ss_pred --eHH--------HHHHHHHCCCCEEEECC--CCHHH--HHHHH-HhCC-------------------------------
Confidence 232 23334568999873 32 23221 11111 1121
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCC
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
.+..- ..|..|+.+. .+.|||+|.+=|+.+. ++.|+.++..+ ++|+.+ -|-
T Consensus 112 ---~~i~G----v~t~~e~~~A----~~~Gad~vk~Fpa~~~gG~~~lk~l~~~~~~ipvva---------------iGG 165 (224)
T 1vhc_A 112 ---PITPG----VNNPMAIEIA----LEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIMP---------------TGG 165 (224)
T ss_dssp ---CEECE----ECSHHHHHHH----HHTTCCEEEETTTTTTTHHHHHHHHHTTTTTCEEEE---------------BSS
T ss_pred ---CEEec----cCCHHHHHHH----HHCCCCEEEEeeCccccCHHHHHHHHhhCCCCeEEE---------------ECC
Confidence 01111 2355675443 3679999999997765 89999999988 699875 566
Q ss_pred chhhHHHHHHHHHHHHc-CccEee
Q 014017 394 IDEQRVMMESLMCLRRA-GADIIL 416 (432)
Q Consensus 394 id~~~~~~EsL~~ikRA-GAd~Ii 416 (432)
|+.+ .+..+..+ |++.|-
T Consensus 166 I~~~-----N~~~~l~agga~~v~ 184 (224)
T 1vhc_A 166 IGLH-----NIRDYLAIPNIVACG 184 (224)
T ss_dssp CCTT-----THHHHHTSTTBCCEE
T ss_pred cCHH-----HHHHHHhcCCCEEEE
Confidence 7765 34456777 777763
No 9
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=95.40 E-value=0.28 Score=45.31 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++++.++.+++.|++.|-+ . .|++.+ .+.|+.++++||++.+-+++
T Consensus 29 ~~~~~~~al~~gGv~~iel-~-----~k~~~~----------~~~i~~l~~~~~~~~vgagt------------------ 74 (214)
T 1wbh_A 29 HAVPMAKALVAGGVRVLNV-T-----LRTECA----------VDAIRAIAKEVPEAIVGAGT------------------ 74 (214)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----SCSTTH----------HHHHHHHHHHCTTSEEEEES------------------
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----CCChhH----------HHHHHHHHHHCcCCEEeeCE------------------
Confidence 5899999999999997766 2 233222 35899999999998876533
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
.++|| ++-.-.++|||.|- |.-.|-.|...++. .|
T Consensus 75 vi~~d--------~~~~A~~aGAd~v~-~p~~d~~v~~~~~~---~g--------------------------------- 109 (214)
T 1wbh_A 75 VLNPQ--------QLAEVTEAGAQFAI-SPGLTEPLLKAATE---GT--------------------------------- 109 (214)
T ss_dssp CCSHH--------HHHHHHHHTCSCEE-ESSCCHHHHHHHHH---SS---------------------------------
T ss_pred EEEHH--------HHHHHHHcCCCEEE-cCCCCHHHHHHHHH---hC---------------------------------
Confidence 12343 22333467999773 22234333332222 22
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
++.+.=..|..|+.+. .+.|||.|.+=|+.+. ++.|+.++..+ ++|+.+ -|-|
T Consensus 110 -----~~~i~G~~t~~e~~~A----~~~Gad~v~~Fpa~~~gG~~~lk~i~~~~~~ipvva---------------iGGI 165 (214)
T 1wbh_A 110 -----IPLIPGISTVSELMLG----MDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP---------------TGGI 165 (214)
T ss_dssp -----SCEEEEESSHHHHHHH----HHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEE---------------BSSC
T ss_pred -----CCEEEecCCHHHHHHH----HHCCCCEEEEecCccccCHHHHHHHhhhCCCCeEEE---------------ECCC
Confidence 1111002345676443 3689999999997776 79999999988 799876 5667
Q ss_pred hhhHHHHHHHHHHHHc-CccEee
Q 014017 395 DEQRVMMESLMCLRRA-GADIIL 416 (432)
Q Consensus 395 d~~~~~~EsL~~ikRA-GAd~Ii 416 (432)
+.+ .+..+..+ |++.|-
T Consensus 166 ~~~-----n~~~~l~agg~~~v~ 183 (214)
T 1wbh_A 166 SPA-----NYRDYLALKSVLCIG 183 (214)
T ss_dssp CTT-----THHHHHTSTTBSCEE
T ss_pred CHH-----HHHHHHhcCCCeEEE
Confidence 765 34457777 777763
No 10
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=95.29 E-value=0.68 Score=43.57 Aligned_cols=171 Identities=18% Similarity=0.238 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCCe--EEEe
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPDL--VIYT 217 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~r------------------aIr~iK~~fPdl--~Iit 217 (432)
...+.++.+.+.|+..+.| |+ |- -|+. -||++.+ .++.||+.++++ ++|+
T Consensus 32 ~~~~~~~~l~~~GaD~iei-g~-P~--sdp~------~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~ 101 (268)
T 1qop_A 32 QSLKIIDTLIDAGADALEL-GV-PF--SDPL------ADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLM 101 (268)
T ss_dssp HHHHHHHHHHHTTCSSEEE-EC-CC--SCCT------TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEE-CC-CC--CCcc------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4788999999999999888 64 52 2221 1455543 488999886543 3332
Q ss_pred eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCC-eecCCCCCCchHHHHHHHHHHCCCccceeecchhh
Q 014017 218 DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGAD-VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAK 296 (432)
Q Consensus 218 DVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGAD-iVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaK 296 (432)
+.+ | ++ ..|. .+-+-..+++||| ++.| |.-...+....+.+.++|...+.+++-+
T Consensus 102 y~n--~--------v~-~~g~----------~~~~~~~~~aGadgii~~-d~~~e~~~~~~~~~~~~g~~~i~l~~p~-- 157 (268)
T 1qop_A 102 YAN--L--------VF-NNGI----------DAFYARCEQVGVDSVLVA-DVPVEESAPFRQAALRHNIAPIFICPPN-- 157 (268)
T ss_dssp CHH--H--------HH-TTCH----------HHHHHHHHHHTCCEEEET-TCCGGGCHHHHHHHHHTTCEEECEECTT--
T ss_pred ccc--H--------HH-HhhH----------HHHHHHHHHcCCCEEEEc-CCCHHHHHHHHHHHHHcCCcEEEEECCC--
Confidence 211 1 11 1111 2333446789999 6666 6666678888888888887544433322
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcC--------C-CchhHHHHHHHh
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKP--------G-LPYLDVIRLLRD 367 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKP--------a-l~YLDII~~vk~ 367 (432)
...|-++++..+ .+|...+|--. - ..-++.|+++|+
T Consensus 158 ----------------------------------t~~~~i~~i~~~-~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~ 202 (268)
T 1qop_A 158 ----------------------------------ADDDLLRQVASY-GRGYTYLLSRSGVTGAENRGALPLHHLIEKLKE 202 (268)
T ss_dssp ----------------------------------CCHHHHHHHHHH-CCSCEEEESSSSCCCSSSCC--CCHHHHHHHHH
T ss_pred ----------------------------------CCHHHHHHHHhh-CCCcEEEEecCCcCCCccCCCchHHHHHHHHHh
Confidence 223434444332 34544333111 1 123689999999
Q ss_pred hCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 368 KYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 368 ~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
..++||++ -|-++.. |....+..+|||.+|
T Consensus 203 ~~~~pi~v---------------ggGI~t~----e~~~~~~~agAD~vV 232 (268)
T 1qop_A 203 YHAAPALQ---------------GFGISSP----EQVSAAVRAGAAGAI 232 (268)
T ss_dssp TTCCCEEE---------------ESSCCSH----HHHHHHHHTTCSEEE
T ss_pred ccCCcEEE---------------ECCCCCH----HHHHHHHHcCCCEEE
Confidence 88999876 2334422 334455678999887
No 11
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=95.19 E-value=0.22 Score=46.45 Aligned_cols=151 Identities=11% Similarity=0.143 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++++.++.+++.|++.|-+ . .|+..+ .+.|+.++++||++.+-+++.
T Consensus 39 ~~~~~~~al~~gGv~~iel-~-----~k~~~~----------~~~i~~l~~~~~~~~igagtv----------------- 85 (225)
T 1mxs_A 39 DILPLADALAAGGIRTLEV-T-----LRSQHG----------LKAIQVLREQRPELCVGAGTV----------------- 85 (225)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----SSSTHH----------HHHHHHHHHHCTTSEEEEECC-----------------
T ss_pred HHHHHHHHHHHCCCCEEEE-e-----cCCccH----------HHHHHHHHHhCcccEEeeCeE-----------------
Confidence 5899999999999997766 2 233322 357999999999988765431
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
++|| ++-.-.++|||.|- |.-.|-.|...++. .|.
T Consensus 86 -l~~d--------~~~~A~~aGAd~v~-~p~~d~~v~~~~~~---~g~-------------------------------- 120 (225)
T 1mxs_A 86 -LDRS--------MFAAVEAAGAQFVV-TPGITEDILEAGVD---SEI-------------------------------- 120 (225)
T ss_dssp -CSHH--------HHHHHHHHTCSSEE-CSSCCHHHHHHHHH---CSS--------------------------------
T ss_pred -eeHH--------HHHHHHHCCCCEEE-eCCCCHHHHHHHHH---hCC--------------------------------
Confidence 2333 23334567999763 22345444443333 231
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
+.+.=..|..|+.+. .+.|||+|.+=|+.+. ++.|+.++..+ ++|+.+ -|-|
T Consensus 121 ------~~i~G~~t~~e~~~A----~~~Gad~vk~FPa~~~~G~~~lk~i~~~~~~ipvva---------------iGGI 175 (225)
T 1mxs_A 121 ------PLLPGISTPSEIMMG----YALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCP---------------TGGV 175 (225)
T ss_dssp ------CEECEECSHHHHHHH----HTTTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEEE---------------BSSC
T ss_pred ------CEEEeeCCHHHHHHH----HHCCCCEEEEccCccccCHHHHHHHHhhCCCCeEEE---------------ECCC
Confidence 100002345675443 3689999999997655 79999999988 799976 5677
Q ss_pred hhhHHHHHHHHHHHH-cCccEee
Q 014017 395 DEQRVMMESLMCLRR-AGADIIL 416 (432)
Q Consensus 395 d~~~~~~EsL~~ikR-AGAd~Ii 416 (432)
+.+. +..+.. +||+.+.
T Consensus 176 ~~~N-----~~~~l~~~Ga~~v~ 193 (225)
T 1mxs_A 176 NPAN-----VRNYMALPNVMCVG 193 (225)
T ss_dssp CTTT-----HHHHHHSTTBCCEE
T ss_pred CHHH-----HHHHHhccCCEEEE
Confidence 7653 345667 6898874
No 12
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=95.17 E-value=0.98 Score=40.28 Aligned_cols=64 Identities=13% Similarity=0.011 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcC------------CCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCc-hh
Q 014017 330 ANYREALVEAQADESEGADILLVKP------------GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI-DE 396 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKP------------al~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i-d~ 396 (432)
.+..|+.+ + .+.|+|+|++=+ ..+-++.++++++.+++||.+ .|-+ +.
T Consensus 127 ~t~~e~~~-~---~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia---------------~GGI~~~ 187 (223)
T 1y0e_A 127 ATVEEAKN-A---ARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA---------------EGNVITP 187 (223)
T ss_dssp SSHHHHHH-H---HHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEE---------------ESSCCSH
T ss_pred CCHHHHHH-H---HHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEE---------------ecCCCCH
Confidence 34566544 2 468999999843 223467899999988999875 4555 54
Q ss_pred hHHHHHHHHHHHHcCccEeeh
Q 014017 397 QRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 397 ~~~~~EsL~~ikRAGAd~IiT 417 (432)
+ .+..+.++|||.++.
T Consensus 188 ~-----~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 188 D-----MYKRVMDLGVHCSVV 203 (223)
T ss_dssp H-----HHHHHHHTTCSEEEE
T ss_pred H-----HHHHHHHcCCCEEEE
Confidence 3 344566789998863
No 13
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=94.84 E-value=0.26 Score=43.74 Aligned_cols=164 Identities=21% Similarity=0.250 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.++.++.+. .|+.-+.+ |. |.. -..| .+.|+.||+.+|++-|.+|.-+ .++
T Consensus 14 ~~~~~~~~~~-~~~diie~-G~-p~~----------~~~g--~~~i~~ir~~~~~~~i~~~~~~-------------~~~ 65 (211)
T 3f4w_A 14 EAMVFMDKVV-DDVDIIEV-GT-PFL----------IREG--VNAIKAIKEKYPHKEVLADAKI-------------MDG 65 (211)
T ss_dssp HHHHHHHHHG-GGCSEEEE-CH-HHH----------HHHT--THHHHHHHHHCTTSEEEEEEEE-------------CSC
T ss_pred HHHHHHHHhh-cCccEEEe-Cc-HHH----------Hhcc--HHHHHHHHHhCCCCEEEEEEEe-------------ccc
Confidence 3556666653 46666555 43 210 0112 3689999999999887655333 111
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
.++ .+-..+++|||.|.--+.-. ..+..+.+.+.+.|. ++.+ . +.+|
T Consensus 66 ----~~~------~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~-~~~v-~--------~~~~------------ 113 (211)
T 3f4w_A 66 ----GHF------ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGK-QVVV-D--------MICV------------ 113 (211)
T ss_dssp ----HHH------HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTC-EEEE-E--------CTTC------------
T ss_pred ----hHH------HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCC-eEEE-E--------ecCC------------
Confidence 222 13445789999887655543 456777777777775 3322 1 1111
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-------chhHHHHHHHhhC-CCCeEEEEechhhHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-------PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-------~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaA 388 (432)
.+..|.++++ .+.|+|+|.|-|+. .-++.++++++.+ ++|+.+ +|
T Consensus 114 -------------~t~~~~~~~~---~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~---~g-------- 166 (211)
T 3f4w_A 114 -------------DDLPARVRLL---EEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAV---AG-------- 166 (211)
T ss_dssp -------------SSHHHHHHHH---HHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCSSCEEEE---ES--------
T ss_pred -------------CCHHHHHHHH---HHcCCCEEEEcCCCcccccCCCCHHHHHHHHHHcCCCcEEE---EC--------
Confidence 1223434444 35799999998762 1368999999986 788854 33
Q ss_pred HHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 389 GALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 389 a~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
-++. |.+..+..+|||.|+.
T Consensus 167 ----GI~~-----~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 167 ----GISS-----QTVKDYALLGPDVVIV 186 (211)
T ss_dssp ----SCCT-----TTHHHHHTTCCSEEEE
T ss_pred ----CCCH-----HHHHHHHHcCCCEEEE
Confidence 3443 3556677899999874
No 14
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=94.73 E-value=0.3 Score=43.24 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=91.7
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCCCCCccee
Q 014017 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGI 232 (432)
Q Consensus 154 si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YTshGHcGI 232 (432)
+.+ ++.+.++.+.+.|+..+-+--..+ -..+.|+.+|+.+| ++.|-.+.+.
T Consensus 20 ~~~-~~~~~~~~~~~~G~~~iev~~~~~----------------~~~~~i~~ir~~~~~~~~ig~~~v~----------- 71 (205)
T 1wa3_A 20 SVE-EAKEKALAVFEGGVHLIEITFTVP----------------DADTVIKELSFLKEKGAIIGAGTVT----------- 71 (205)
T ss_dssp SHH-HHHHHHHHHHHTTCCEEEEETTST----------------THHHHHHHTHHHHHTTCEEEEESCC-----------
T ss_pred CHH-HHHHHHHHHHHCCCCEEEEeCCCh----------------hHHHHHHHHHHHCCCCcEEEecccC-----------
Confidence 343 578888899999999885521101 12467999999887 6665544321
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCC
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sa 312 (432)
|-+ ++....++|||+| =+..++..+ -+...+.| +++|.
T Consensus 72 --------~~~-------~~~~a~~~Gad~i-v~~~~~~~~---~~~~~~~g---~~vi~-------------------- 109 (205)
T 1wa3_A 72 --------SVE-------QCRKAVESGAEFI-VSPHLDEEI---SQFCKEKG---VFYMP-------------------- 109 (205)
T ss_dssp --------SHH-------HHHHHHHHTCSEE-ECSSCCHHH---HHHHHHHT---CEEEC--------------------
T ss_pred --------CHH-------HHHHHHHcCCCEE-EcCCCCHHH---HHHHHHcC---CcEEC--------------------
Confidence 222 2333445999999 454444322 12222222 33331
Q ss_pred CCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHH
Q 014017 313 PRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 313 p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~ 390 (432)
. ..+..|+.+. ++-|+|++.+.|+.. =++.++++++.+ ++|+.+
T Consensus 110 -----------g----~~t~~e~~~a----~~~Gad~vk~~~~~~~g~~~~~~l~~~~~~~pvia--------------- 155 (205)
T 1wa3_A 110 -----------G----VMTPTELVKA----MKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVP--------------- 155 (205)
T ss_dssp -----------E----ECSHHHHHHH----HHTTCCEEEETTHHHHHHHHHHHHHTTCTTCEEEE---------------
T ss_pred -----------C----cCCHHHHHHH----HHcCCCEEEEcCccccCHHHHHHHHHhCCCCcEEE---------------
Confidence 1 1233554433 567999998888532 267788888887 788865
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|-++. |.+..+..+|||.+.
T Consensus 156 ~GGI~~-----~~~~~~~~~Ga~~v~ 176 (205)
T 1wa3_A 156 TGGVNL-----DNVCEWFKAGVLAVG 176 (205)
T ss_dssp BSSCCT-----TTHHHHHHHTCSCEE
T ss_pred cCCCCH-----HHHHHHHHCCCCEEE
Confidence 455554 344566788999875
No 15
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=94.50 E-value=1 Score=41.69 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcC--------CCCC----HHHHHHHHHHHC--CCeEEEeeecccC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYN--------DNGL----VPRTIWLLKDRY--PDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n--------~~g~----v~raIr~iK~~f--Pdl~IitDVcLc~ 223 (432)
...+.++.+.+.|+..+-| |. |- -|+..+.-+- .+|. ....++.+|+.. | ++++.
T Consensus 33 ~~~~~~~~l~~~Gad~iel-g~-p~--~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~P-v~~m~------ 101 (262)
T 1rd5_A 33 TTAEALRLLDGCGADVIEL-GV-PC--SDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCP-VVLLS------ 101 (262)
T ss_dssp HHHHHHHHHHHTTCSSEEE-EC-CC--SCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSC-EEEEC------
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-CC--CCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-EEEEe------
Confidence 5889999999999999988 53 42 2221110000 1111 224577777763 3 33332
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccch
Q 014017 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 224 YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG 303 (432)
|.. .+.. ..+ +. .+++|||.|--.|+-...+..+++.+.++|..-+..+
T Consensus 102 ~~~-----~~~~-~~~--~~-----------a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~------------ 150 (262)
T 1rd5_A 102 YYK-----PIMF-RSL--AK-----------MKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLT------------ 150 (262)
T ss_dssp CSH-----HHHS-CCT--HH-----------HHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEE------------
T ss_pred cCc-----HHHH-HHH--HH-----------HHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEE------------
Confidence 210 0000 111 11 6789999554457666678888888888887544443
Q ss_pred hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC-------C--chhHHHHHHHhhCCCCeE
Q 014017 304 PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG-------L--PYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 304 PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa-------l--~YLDII~~vk~~~~lPva 374 (432)
. |.+..|.++++..+. +|-..+|--++ . .-++.|+++|+..++||.
T Consensus 151 --------------------a----~~t~~e~~~~~~~~~-~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~~pI~ 205 (262)
T 1rd5_A 151 --------------------T----PAIPEDRMKEITKAS-EGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVA 205 (262)
T ss_dssp --------------------C----TTSCHHHHHHHHHHC-CSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEE
T ss_pred --------------------C----CCCCHHHHHHHHhcC-CCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcCCeEE
Confidence 2 333345555544332 24333331222 1 145789999998999998
Q ss_pred EEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee--hhcHHH
Q 014017 375 AYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL--TYFALQ 422 (432)
Q Consensus 375 aYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii--TYfA~~ 422 (432)
+ -|-|+. -|.+..+..+|||.++ |++...
T Consensus 206 v---------------gGGI~~----~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 206 V---------------GFGISK----PEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp E---------------ESCCCS----HHHHHHHHHTTCSEEEECHHHHHH
T ss_pred E---------------ECCcCC----HHHHHHHHHcCCCEEEEChHHHhH
Confidence 7 344552 2344556778999765 444443
No 16
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=94.08 E-value=1.2 Score=42.22 Aligned_cols=151 Identities=16% Similarity=0.200 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.+++.++.+++-|++.+-+ . .+++. -.++|+.|+++||++.|-+ |
T Consensus 47 ~a~~~a~al~~gGi~~iEv-t-----~~t~~----------a~e~I~~l~~~~~~~~iGa-------------------G 91 (232)
T 4e38_A 47 DIIPLGKVLAENGLPAAEI-T-----FRSDA----------AVEAIRLLRQAQPEMLIGA-------------------G 91 (232)
T ss_dssp GHHHHHHHHHHTTCCEEEE-E-----TTSTT----------HHHHHHHHHHHCTTCEEEE-------------------E
T ss_pred HHHHHHHHHHHCCCCEEEE-e-----CCCCC----------HHHHHHHHHHhCCCCEEeE-------------------C
Confidence 5899999999999998877 1 12111 2379999999999987764 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
.|.+ .+++-...+||||+|.-.. .|-.| ..|+.
T Consensus 92 TVlt-------~~~a~~Ai~AGA~fIvsP~-~~~~v-----------------i~~~~---------------------- 124 (232)
T 4e38_A 92 TILN-------GEQALAAKEAGATFVVSPG-FNPNT-----------------VRACQ---------------------- 124 (232)
T ss_dssp CCCS-------HHHHHHHHHHTCSEEECSS-CCHHH-----------------HHHHH----------------------
T ss_pred CcCC-------HHHHHHHHHcCCCEEEeCC-CCHHH-----------------HHHHH----------------------
Confidence 2222 2345556789999885322 22211 11111
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
.|+++++.=..+..|+++. ++-|||+|.+=|+.+. ++.|+.++.-+ ++|+.+ -|-+
T Consensus 125 --~~gi~~ipGv~TptEi~~A----~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~ip~~p---------------tGGI 183 (232)
T 4e38_A 125 --EIGIDIVPGVNNPSTVEAA----LEMGLTTLKFFPAEASGGISMVKSLVGPYGDIRLMP---------------TGGI 183 (232)
T ss_dssp --HHTCEEECEECSHHHHHHH----HHTTCCEEEECSTTTTTHHHHHHHHHTTCTTCEEEE---------------BSSC
T ss_pred --HcCCCEEcCCCCHHHHHHH----HHcCCCEEEECcCccccCHHHHHHHHHHhcCCCeee---------------EcCC
Confidence 1122111113455787666 5789999999998876 79999999987 588875 3556
Q ss_pred hhhHHHHHHHHHHHHcCccEee
Q 014017 395 DEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+ .+..+..+||...+
T Consensus 184 ~~~-----n~~~~l~aGa~~~v 200 (232)
T 4e38_A 184 TPS-----NIDNYLAIPQVLAC 200 (232)
T ss_dssp CTT-----THHHHHTSTTBCCE
T ss_pred CHH-----HHHHHHHCCCeEEE
Confidence 643 34556677777544
No 17
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=93.98 E-value=2.6 Score=40.51 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCC--eEEEe
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPD--LVIYT 217 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~r------------------aIr~iK~~fPd--l~Iit 217 (432)
..++.++.+.+.|..-+-| |+ | .-|+.. ||++.| .++.+|+++++ +++++
T Consensus 35 ~~~~~~~~l~~~GaD~iEl-Gi-P--fSDP~a------DGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~ 104 (271)
T 3nav_A 35 QSLAIMQTLIDAGADALEL-GM-P--FSDPLA------DGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLM 104 (271)
T ss_dssp HHHHHHHHHHHTTCSSEEE-EC-C--CCCGGG------CCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-C--CCCCCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 5788899999999988777 74 5 245543 688765 57778877766 44442
Q ss_pred eecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecc
Q 014017 218 DVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 218 DVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
... .+..-| +.+-+-..++||+|.|--.|+=.......+++++++|...+.+++-
T Consensus 105 Y~n-----------~v~~~g----------~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap 159 (271)
T 3nav_A 105 YAN-----------LVYARG----------IDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPP 159 (271)
T ss_dssp CHH-----------HHHHTC----------HHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECT
T ss_pred cCc-----------HHHHHh----------HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECC
Confidence 211 111112 1334445678999996666888888999999999999977777743
No 18
>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*
Probab=93.34 E-value=0.92 Score=46.91 Aligned_cols=146 Identities=21% Similarity=0.243 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCCeecCCCCC--------------------CchHHHHHHHHHHCCCccceeecchhhhccccch------
Q 014017 250 KQAVSQARAGADVVSPSDMM--------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG------ 303 (432)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM--------------------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG------ 303 (432)
+..-.+.+|||--|--.|-. =.||.|.|.+.|..|- +.-|++-+--.+..+..
T Consensus 164 rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~-d~vIiARTDA~~a~l~~s~~d~r 242 (433)
T 3eol_A 164 EIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGT-PTLIVARTDAEAAKLLTSDIDER 242 (433)
T ss_dssp HHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECTTTCCEESCCCSTT
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC-CEEEEEEcCCccccccccCcccc
Confidence 33445677888666555544 2489999999988785 78888776543332211
Q ss_pred --hhhhhhhCCCCCCCcc---cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh----CCCCeE
Q 014017 304 --PFREALDSNPRFGDKK---TYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK----YPLPIA 374 (432)
Q Consensus 304 --PFRdAa~Sap~~gDRk---tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~----~~lPva 374 (432)
+|= .+. |.|. -|+.. ...+|||+.+..=.+ |||+|++.|..+-++-|+++.+. +++++.
T Consensus 243 d~~fl--~g~----g~r~~eG~y~~~-----~gld~AI~Ra~AY~~-GAD~If~e~~~~~~eei~~f~~~v~~~~P~~~L 310 (433)
T 3eol_A 243 DQPFV--DYE----AGRTAEGFYQVK-----NGIEPCIARAIAYAP-YCDLIWMETSKPDLAQARRFAEAVHKAHPGKLL 310 (433)
T ss_dssp TGGGB--CSS----SCBCTTCCEEBC-----CSHHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHHHSTTCCE
T ss_pred cccce--ecc----Cccccccccccc-----CCHHHHHHHHHHHHh-cCCEEEEeCCCCCHHHHHHHHHHhcccCCCccc
Confidence 010 000 1121 14442 357899999987665 99999999998888888877764 568889
Q ss_pred EEEechhhHHHHHHHHCCCchhhHHHHHHH-HHHHHcCccEee
Q 014017 375 AYQVSGEYSMIKAGGALKMIDEQRVMMESL-MCLRRAGADIIL 416 (432)
Q Consensus 375 aYqVSGEYaMikaAa~~G~id~~~~~~EsL-~~ikRAGAd~Ii 416 (432)
+|.-|-.|...++ ++.++ ++++ .-+..+|..+|+
T Consensus 311 ~~~~sPsfnw~~~------~~~~~--~~~f~~eLa~lGv~~v~ 345 (433)
T 3eol_A 311 AYNCSPSFNWKKN------LDDAT--IAKFQRELGAMGYKFQF 345 (433)
T ss_dssp EEECCSSSCHHHH------SCHHH--HHHHHHHHHHHTEEEEE
T ss_pred ccCCCCCCccccc------CChhH--HhHHHHHHHHcCCeEEE
Confidence 9999888877553 34332 2332 556677877766
No 19
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=93.22 E-value=0.58 Score=46.87 Aligned_cols=95 Identities=26% Similarity=0.206 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCeecC-------------CCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhh--hhhh---
Q 014017 249 CKQAVSQARAGADVVSP-------------SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR--EALD--- 310 (432)
Q Consensus 249 ak~Avs~A~AGADiVAP-------------SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR--dAa~--- 310 (432)
++||..+.++||+.|.= +..|. -...|++..+. .+++|| +|.--.++-+.+ +|+|
T Consensus 27 ~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~-~p~~i~~I~~a---v~iPV~---~K~rig~~~e~qilea~GaD~ 99 (330)
T 2yzr_A 27 VEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS-DPALIEEIMDA---VSIPVM---AKCRIGHTTEALVLEAIGVDM 99 (330)
T ss_dssp HHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCC-CHHHHHHHHHH---CSSCEE---EEEETTCHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHcCCCEEEecCCccccccCCcchhhcC-CHHHHHHHHHh---cCCCeE---EEEeecchHHHHHHHHcCCCE
Confidence 66889999999999911 11222 33344444433 367887 454333322222 1111
Q ss_pred ---C---CC----CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcC
Q 014017 311 ---S---NP----RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKP 354 (432)
Q Consensus 311 ---S---ap----~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKP 354 (432)
| +| ..-+|+.|..+++..-+|..||+|.+ +||||||-+|.
T Consensus 100 Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~----~~Ga~~i~t~g 149 (330)
T 2yzr_A 100 IDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI----WEGAAMIRTKG 149 (330)
T ss_dssp EEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH----HHTCSEEEECC
T ss_pred EehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH----hcCcceeeccC
Confidence 0 11 12367788888888899999999986 79999999999
No 20
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=93.00 E-value=2.7 Score=39.46 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCCeEEEeee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~r------------------aIr~iK~~fPdl~IitDV 219 (432)
..++.++.+.+.|+..+.| |. |- -|+. .||++.+ .++.+|+.+|++-|+.
T Consensus 32 ~~~~~~~~l~~~G~D~IEl-G~-P~--sdP~------adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~-- 99 (262)
T 2ekc_A 32 TSLKAFKEVLKNGTDILEI-GF-PF--SDPV------ADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLL-- 99 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEE-EC-CC--SCCT------TSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEE--
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-CC--CCcc------cccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEE--
Confidence 4688889999999999888 63 52 2221 2466643 2889999887654432
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeec
Q 014017 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 220 cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImS 292 (432)
+ .|. ..+...| ++ +-+-..+++|+|-|--.|+-...+...++.+.++|+.-+.+++
T Consensus 100 -m-~y~-----n~v~~~g-------~~---~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~ 155 (262)
T 2ekc_A 100 -M-TYY-----NPIFRIG-------LE---KFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGA 155 (262)
T ss_dssp -E-CCH-----HHHHHHC-------HH---HHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEEC
T ss_pred -E-ecC-----cHHHHhh-------HH---HHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 1 220 0000001 12 2333356899994444477777888899999999985455443
No 21
>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A
Probab=92.60 E-value=1.3 Score=45.89 Aligned_cols=149 Identities=21% Similarity=0.250 Sum_probs=93.4
Q ss_pred HHHHHHHHcCCCeecCCCCC--------------------CchHHHHHHHHHHCCCccceeecchhhhccccc----hhh
Q 014017 250 KQAVSQARAGADVVSPSDMM--------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFY----GPF 305 (432)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM--------------------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfY----GPF 305 (432)
+..-.+++|||--|---|-. =+||.|+|++.|..|. +.-|++-+--.+..|- -|
T Consensus 171 ~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~-d~~IiARTDa~aa~l~~s~~d~- 248 (435)
T 3lg3_A 171 ELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGV-PTLLIARTDADAADLLTSDCDP- 248 (435)
T ss_dssp HHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECTTTCCEESCCCCG-
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC-CeEEEEEcCCcccccccccccc-
Confidence 33345678888777666643 2489999999988885 6888876543332111 10
Q ss_pred hhhhhCCCCCCCcc---cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh----CCCCeEEEEe
Q 014017 306 REALDSNPRFGDKK---TYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK----YPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRk---tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~----~~lPvaaYqV 378 (432)
||- .--.|.|. -|+.. ...+|||+.+..=.+ |||+|++.|..+-++-|+++.+. +++.+.+|+-
T Consensus 249 rD~---~fi~G~r~~eG~y~~~-----~gld~AI~Ra~AY~~-GAD~if~E~~~~~~~ei~~f~~~v~~~~P~~~La~~~ 319 (435)
T 3lg3_A 249 YDR---EFITGDRTAEGFFRTR-----AGIEQAISRGLAYAP-YADLVWCETSTPDLALAKRFADAVHAQFPGKLLAYNC 319 (435)
T ss_dssp GGG---GGEEEEECTTCCEEEC-----CSHHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred ccc---hhhccccccccccccc-----CCHHHHHHHHHHHHc-cCCEEEecCCCCCHHHHHHHHHHhccccCCeEEEeCC
Confidence 000 00002121 14443 357899999887665 99999999998888888877653 5688899999
Q ss_pred chhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 379 SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 379 SGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
|-.|.=-++ ++.+ -+-....-+.++|..++|
T Consensus 320 sPsfnw~~~------~~d~-~~~~f~~eLa~lG~~~v~ 350 (435)
T 3lg3_A 320 SPSFNWKKN------LTDQ-QIASFQDELSAMGYKYQF 350 (435)
T ss_dssp CSSSCHHHH------SCHH-HHHHHHHHHHHTTEEEEE
T ss_pred CCCcccccc------CCHH-HHHHHHHHHHHcCCcEEE
Confidence 887753332 2322 223334567778988776
No 22
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=92.53 E-value=2.6 Score=40.18 Aligned_cols=168 Identities=20% Similarity=0.219 Sum_probs=109.2
Q ss_pred CCCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeee
Q 014017 146 AMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 146 sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDV 219 (432)
.|||+|=...- .+ +-+.|+..+++=+- +.. +..+.+-+++ ...++.|.+..+ +-|++|.
T Consensus 23 ~~~~ayD~~sA-~~------~~~aG~dai~vg~~s~a~-------~~G~pD~~~vt~~em~~~~~~I~r~~~-~pviaD~ 87 (255)
T 2qiw_A 23 VLPTVWDTWSA-GL------VEEAGFSGLTIGSHPVAD-------ATGSSDGENMNFADYMAVVKKITSAVS-IPVSVDV 87 (255)
T ss_dssp ECCEESSHHHH-HH------HHHTTCSCEEECHHHHHH-------HTTCCTTTCSCHHHHHHHHHHHHHHCS-SCEEEEC
T ss_pred EEecCcCHHHH-HH------HHHcCCCEEEEChHHHHH-------hCCCCCCCCcCHHHHHHHHHHHHhcCC-CCEEecc
Confidence 38888655431 22 33479999887320 110 1233333343 356667777665 7899887
Q ss_pred cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-------------CCchHHHHHHHHHHCCCc
Q 014017 220 ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-------------MDGRVGAIRAALDAEGFQ 286 (432)
Q Consensus 220 cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM-------------MDGrV~aIR~aLD~~Gf~ 286 (432)
=.- |- +.. .+.+-.+.++||+.|--.|= |=.+|.+++++-++.|.
T Consensus 88 ~~G-yg---------------~~~-----~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~- 145 (255)
T 2qiw_A 88 ESG-YG---------------LSP-----ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGV- 145 (255)
T ss_dssp TTC-TT---------------CCH-----HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCC-cC---------------cHH-----HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCC-
Confidence 543 41 111 45555566799999987775 45678888888777775
Q ss_pred cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHH
Q 014017 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLR 366 (432)
Q Consensus 287 ~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk 366 (432)
+.-|+..+--+ ..+ .+| + ....+|+|+.+..=.+-|||+|++ |+.+-.|.++++.
T Consensus 146 ~~~v~aRtd~~----------~~g----~~~------~----~~~~~~ai~ra~a~~eAGAd~i~~-e~~~~~~~~~~i~ 200 (255)
T 2qiw_A 146 DVVINGRTDAV----------KLG----ADV------F----EDPMVEAIKRIKLMEQAGARSVYP-VGLSTAEQVERLV 200 (255)
T ss_dssp CCEEEEEECHH----------HHC----TTT------S----SSHHHHHHHHHHHHHHHTCSEEEE-CCCCSHHHHHHHH
T ss_pred CeEEEEEechh----------hcc----CCc------c----hHHHHHHHHHHHHHHHcCCcEEEE-cCCCCHHHHHHHH
Confidence 66788776543 111 011 0 112478999998888899999999 7888899999999
Q ss_pred hhCCCCeEE
Q 014017 367 DKYPLPIAA 375 (432)
Q Consensus 367 ~~~~lPvaa 375 (432)
+..++|+-.
T Consensus 201 ~~~~~P~n~ 209 (255)
T 2qiw_A 201 DAVSVPVNI 209 (255)
T ss_dssp TTCSSCBEE
T ss_pred HhCCCCEEE
Confidence 999999943
No 23
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.44 E-value=0.62 Score=43.38 Aligned_cols=170 Identities=14% Similarity=0.147 Sum_probs=99.6
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
.||=.-++.. ...+..+.+.+.|...+.. + + ...|+.||+.. ++=|+.... .-|.
T Consensus 27 ~~~~pl~~~~-~~~~~A~a~~~~Ga~~i~~-~------------------~--~~~i~~ir~~v-~~Pvig~~k-~~~~- 81 (229)
T 3q58_A 27 VPGSPMDKPE-IVAAMAQAAASAGAVAVRI-E------------------G--IENLRTVRPHL-SVPIIGIIK-RDLT- 81 (229)
T ss_dssp CTTSTTCSHH-HHHHHHHHHHHTTCSEEEE-E------------------S--HHHHHHHGGGC-CSCEEEECB-CCCS-
T ss_pred CCCCCCCCcc-hHHHHHHHHHHCCCcEEEE-C------------------C--HHHHHHHHHhc-CCCEEEEEe-ecCC-
Confidence 3333334443 4777888888899998765 1 1 35789999886 555554322 1221
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCccceeecchhhhccccch
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG 303 (432)
||..++ +.|+++ +....++|||+|....-. +..+..+-+.+.+.| +.+|
T Consensus 82 -~~~~~I--------~~~~~~----i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g---~~v~------------ 133 (229)
T 3q58_A 82 -GSPVRI--------TPYLQD----VDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHG---LLAM------------ 133 (229)
T ss_dssp -SCCCCB--------SCSHHH----HHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTT---CEEE------------
T ss_pred -CCceEe--------CccHHH----HHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCC---CEEE------------
Confidence 122222 224433 334578999999743221 134444444444443 3444
Q ss_pred hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---------cCCCchhHHHHHHHhhCCCCeE
Q 014017 304 PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV---------KPGLPYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 304 PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---------KPal~YLDII~~vk~~~~lPva 374 (432)
.+ ..+.+||.+. ++.|||+|-+ |+..+-++.++++++. ++|+.
T Consensus 134 -------------------~~----v~t~eea~~a----~~~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~-~ipvI 185 (229)
T 3q58_A 134 -------------------AD----CSTVNEGISC----HQKGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA-GCRVI 185 (229)
T ss_dssp -------------------EE----CSSHHHHHHH----HHTTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT-TCCEE
T ss_pred -------------------Ee----cCCHHHHHHH----HhCCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc-CCCEE
Confidence 13 4566776544 4679999965 3445678999999988 99998
Q ss_pred EEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 375 AYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 375 aYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
| .|-|.. .|-+..++.+|||.++
T Consensus 186 A---------------~GGI~t----~~d~~~~~~~GadgV~ 208 (229)
T 3q58_A 186 A---------------EGRYNT----PALAANAIEHGAWAVT 208 (229)
T ss_dssp E---------------ESSCCS----HHHHHHHHHTTCSEEE
T ss_pred E---------------ECCCCC----HHHHHHHHHcCCCEEE
Confidence 6 344432 2333455677999876
No 24
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=91.39 E-value=4.7 Score=37.97 Aligned_cols=156 Identities=13% Similarity=0.164 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
..++.++.+++-|++.+-+ .- .++ + -..+|+.||++||+++|-+ |
T Consensus 26 ~a~~~a~al~~gGi~~iEv-t~-----~t~---------~-a~~~I~~l~~~~p~~~IGA-------------------G 70 (217)
T 3lab_A 26 HAIPMAKALVAGGVHLLEV-TL-----RTE---------A-GLAAISAIKKAVPEAIVGA-------------------G 70 (217)
T ss_dssp GHHHHHHHHHHTTCCEEEE-ET-----TST---------T-HHHHHHHHHHHCTTSEEEE-------------------E
T ss_pred HHHHHHHHHHHcCCCEEEE-eC-----CCc---------c-HHHHHHHHHHHCCCCeEee-------------------c
Confidence 5889999999999998776 21 111 1 2379999999999987754 4
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
.|.+- +++-...+|||++|. |. .|= -++.|+.+| | ++ |
T Consensus 71 TVlt~-------~~a~~ai~AGA~fivsP~--~~~-----------------evi~~~~~~-----~-----v~-----~ 109 (217)
T 3lab_A 71 TVCTA-------DDFQKAIDAGAQFIVSPG--LTP-----------------ELIEKAKQV-----K-----LD-----G 109 (217)
T ss_dssp CCCSH-------HHHHHHHHHTCSEEEESS--CCH-----------------HHHHHHHHH-----H-----HH-----C
T ss_pred cccCH-------HHHHHHHHcCCCEEEeCC--CcH-----------------HHHHHHHHc-----C-----CC-----c
Confidence 45543 445556789999874 43 111 122222111 1 10 0
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCC
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
.+|=+++.=..+..|+++. .+-|+|+|-+=|+..+ ++.|+.++.-+ ++|+.+ .|-
T Consensus 110 ---~~~~~~~PG~~TptE~~~A----~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~i~~~p---------------tGG 167 (217)
T 3lab_A 110 ---QWQGVFLPGVATASEVMIA----AQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCP---------------TGG 167 (217)
T ss_dssp ---SCCCEEEEEECSHHHHHHH----HHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEE---------------BSS
T ss_pred ---cCCCeEeCCCCCHHHHHHH----HHcCCCEEEECccccccCHHHHHHHHhhhcCceEEE---------------eCC
Confidence 1111211113566887776 6789999999999876 79999999988 488775 566
Q ss_pred chhhHHHHHHHHHHHHcCccEee
Q 014017 394 IDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.+ .+..+..+||.+.+
T Consensus 168 I~~~-----N~~~~l~aGa~~~v 185 (217)
T 3lab_A 168 ISKD-----NYKEYLGLPNVICA 185 (217)
T ss_dssp CCTT-----THHHHHHSTTBCCE
T ss_pred CCHH-----HHHHHHHCCCEEEE
Confidence 7754 34566678887655
No 25
>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A
Probab=91.33 E-value=1.5 Score=45.17 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCCeecCCCCC--------------------CchHHHHHHHHHHCCCccceeecchhhhccccch------
Q 014017 250 KQAVSQARAGADVVSPSDMM--------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG------ 303 (432)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM--------------------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG------ 303 (432)
+..-.+.+|||--|---|-. =.||.|.|.+.|..|- ++-|++-+--++..+-.
T Consensus 167 ~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~-d~vIiARTDa~~a~li~s~~d~~ 245 (429)
T 1f8m_A 167 ELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADV-PTVVIARTDAEAATLITSDVDER 245 (429)
T ss_dssp HHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTC-CCEEEEEECTTTCCEESCCCSTT
T ss_pred HHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCC-CEEEEEEechhhhcccccccccc
Confidence 33445678888665544433 2589999999998885 78899876555432211
Q ss_pred --hhhhhhhCCCCCCCcc-cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC--CC--eEEE
Q 014017 304 --PFREALDSNPRFGDKK-TYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP--LP--IAAY 376 (432)
Q Consensus 304 --PFRdAa~Sap~~gDRk-tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~--lP--vaaY 376 (432)
||-... .++. -|+.. ...+|||+.+..=.+ |||+|++.++.+-+|-|+++.+..+ .| +.+|
T Consensus 246 d~~fl~g~------~~~eg~y~~~-----~gld~AI~Ra~AYa~-gAD~if~e~~~~~~eei~~f~~~v~~~~P~~~La~ 313 (429)
T 1f8m_A 246 DQPFITGE------RTREGFYRTK-----NGIEPCIARAKAYAP-FADLIWMETGTPDLEAARQFSEAVKAEYPDQMLAY 313 (429)
T ss_dssp TGGGEEEE------ECTTSCEEEC-----CSHHHHHHHHHHHGG-GCSEEEECCSSCCHHHHHHHHHHHHTTCTTCEEEE
T ss_pred ccccccCC------CCcccccccc-----cCHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHhcccCCCceeec
Confidence 121111 0122 24443 457899988877655 9999999988889999998887664 36 7889
Q ss_pred EechhhHH
Q 014017 377 QVSGEYSM 384 (432)
Q Consensus 377 qVSGEYaM 384 (432)
+-|.-|.-
T Consensus 314 n~sPsf~w 321 (429)
T 1f8m_A 314 NCSPSFNW 321 (429)
T ss_dssp ECCTTSCH
T ss_pred CCCCCCCc
Confidence 98877763
No 26
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=91.21 E-value=3.1 Score=40.58 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=106.1
Q ss_pred CC-CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 014017 147 MP-GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (432)
Q Consensus 147 MP-Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT 225 (432)
|| |=|..+.. ..++-+.++.+.|...|-|=|- .-+...|+.+.++- +=|+..+-|-|=+
T Consensus 85 ~pfgsy~~s~~-~a~~na~rl~kaGa~aVklEdg-----------------~e~~~~I~al~~ag--IpV~gHiGLtPQs 144 (275)
T 1o66_A 85 LPFGAYQQSKE-QAFAAAAELMAAGAHMVKLEGG-----------------VWMAETTEFLQMRG--IPVCAHIGLTPQS 144 (275)
T ss_dssp CCTTSSSSCHH-HHHHHHHHHHHTTCSEEEEECS-----------------GGGHHHHHHHHHTT--CCEEEEEESCGGG
T ss_pred CCCCCccCCHH-HHHHHHHHHHHcCCcEEEECCc-----------------HHHHHHHHHHHHcC--CCeEeeeccCcee
Confidence 66 35666664 5888888999999999988431 13567888888764 3356566666655
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchh-hhccccchh
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA-KYASSFYGP 304 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa-KyASsfYGP 304 (432)
.+--.|..-. |. . +..+.+.+.|..+.+||||+|-+-.+-.--..+|.++| +++++..-+ .++..=+=-
T Consensus 145 ~~~~ggf~v~-gr--t-~~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l------~iP~igIGaG~~~dgQvLV 214 (275)
T 1o66_A 145 VFAFGGYKVQ-GR--G-GKAQALLNDAKAHDDAGAAVVLMECVLAELAKKVTETV------SCPTIGIGAGADCDGQVLV 214 (275)
T ss_dssp TTC---------------CHHHHHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHC------SSCEEEESSCSCSSEEEEC
T ss_pred ecccCCeEEE-eC--h-HHHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHhC------CCCEEEECCCCCCCcceee
Confidence 5444443321 32 1 34688999999999999999987776544455555555 377777643 466655555
Q ss_pred hhhhhhCC----CCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 305 FREALDSN----PRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 305 FRdAa~Sa----p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
+-|.++-. |+|- |.|--- -.-..+|+++-..|+.+|.
T Consensus 215 ~~D~lG~~~~~~pkf~--k~y~~~----~~~~~~a~~~y~~~V~~~~ 255 (275)
T 1o66_A 215 MHDMLGIFPGKTAKFV--KNFMQG----HDSVQAAVRAYVAEVKAKT 255 (275)
T ss_dssp HHHHTTCSSSSCCTTC--CCSSTT----CSSHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCCCCCCCCch--hhhhhH----HHHHHHHHHHHHHHHhcCC
Confidence 66777643 5552 455321 3447899999999988875
No 27
>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}
Probab=91.17 E-value=0.77 Score=47.56 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCCeecCCCCC--------------------CchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhh
Q 014017 250 KQAVSQARAGADVVSPSDMM--------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL 309 (432)
Q Consensus 250 k~Avs~A~AGADiVAPSDMM--------------------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa 309 (432)
+..-.+.+|||--|---|-. =.||.|+|.+.|..|- ++-|++-+--++..|-.
T Consensus 171 ~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~-d~~IiARTDa~~a~l~~------ 243 (439)
T 3i4e_A 171 ELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGT-PTVLVARTDAEAADLIT------ 243 (439)
T ss_dssp HHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTC-CCEEEEEECTTTCCEES------
T ss_pred HHHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC-CeEEEEEcCcccccccc------
Confidence 34445678888776655543 2489999999988885 78888776555443321
Q ss_pred hCCCCCCC---------ccc-ccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh----CCCCeEE
Q 014017 310 DSNPRFGD---------KKT-YVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK----YPLPIAA 375 (432)
Q Consensus 310 ~Sap~~gD---------Rkt-YQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~----~~lPvaa 375 (432)
|..-..| +.. |+. ....+|||+.+..=.+ |||+|++.|+.+-++-|+++.+. +++++.+
T Consensus 244 -s~~d~~d~~fi~G~r~~eg~~~~-----~~gldeAI~Ra~AY~~-GAD~if~E~~~~~~eei~~f~~~v~~~~P~~~l~ 316 (439)
T 3i4e_A 244 -SDIDDNDKPYLTGERTVEGFFRT-----KPGLEQAISRGLAYAP-YADLIWCETGKPDLEYAKKFAEAIHKQFPGKLLS 316 (439)
T ss_dssp -CCCCTTTGGGEEEEECTTSCEEE-----CCSHHHHHHHHHHHTT-TCSEEEECCSSCCHHHHHHHHHHHHHHSTTCEEE
T ss_pred -cccccccchhhcccCcccccccc-----cCCHHHHHHHHHHHHh-hCCEEEecCCCCCHHHHHHHHHHhcccCCceEEe
Confidence 1100011 112 333 2457899999987665 99999999999999998887764 5688899
Q ss_pred EEechhhH
Q 014017 376 YQVSGEYS 383 (432)
Q Consensus 376 YqVSGEYa 383 (432)
|+-|..|.
T Consensus 317 ~~~sPsfn 324 (439)
T 3i4e_A 317 YNCSPSFN 324 (439)
T ss_dssp EECCSSSC
T ss_pred eCCCCCCc
Confidence 99998765
No 28
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=90.68 E-value=0.93 Score=41.11 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=35.2
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE-------cCCCchhHHHHHHHhhCCCCeEE
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLV-------KPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV-------KPal~YLDII~~vk~~~~lPvaa 375 (432)
||+.+|+. ..+..|..++.+ +.|||.|-| .+...+ ++|+++++.+++|+-+
T Consensus 23 g~~~~~~~-----~~d~~~~a~~~~---~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v 80 (244)
T 1vzw_A 23 GESGTETS-----YGSPLEAALAWQ---RSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVEL 80 (244)
T ss_dssp -----CCB-----CCCHHHHHHHHH---HTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEE
T ss_pred ccccccee-----cCCHHHHHHHHH---HcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEE
Confidence 77888885 336666555443 489999976 477778 9999999999999876
No 29
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.65 E-value=0.89 Score=42.35 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
...+..+.+.+.|...+.. + + ...|+.||+.. ++=|+... -..|. ||..++
T Consensus 37 ~~~~~A~a~~~~Ga~~i~~-~------------------~--~~~i~~ir~~v-~~Pvig~~-k~d~~--~~~~~I---- 87 (232)
T 3igs_A 37 IVAAMALAAEQAGAVAVRI-E------------------G--IDNLRMTRSLV-SVPIIGII-KRDLD--ESPVRI---- 87 (232)
T ss_dssp HHHHHHHHHHHTTCSEEEE-E------------------S--HHHHHHHHTTC-CSCEEEEC-BCCCS--SCCCCB----
T ss_pred hHHHHHHHHHHCCCeEEEE-C------------------C--HHHHHHHHHhc-CCCEEEEE-eecCC--CcceEe----
Confidence 4778888888999987654 1 1 35789999876 44444432 22221 222222
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCC---CchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMM---DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR 314 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM---DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~ 314 (432)
+.|+++ +....++|||+|...... +..+..+-+.+.+.| +.+|
T Consensus 88 ----~~~~~~----i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g---~~v~----------------------- 133 (232)
T 3igs_A 88 ----TPFLDD----VDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHH---LLTM----------------------- 133 (232)
T ss_dssp ----SCSHHH----HHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTT---CEEE-----------------------
T ss_pred ----CccHHH----HHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCC---CEEE-----------------------
Confidence 224433 333468999999743221 234444444444444 3344
Q ss_pred CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---------cCCCchhHHHHHHHhhCCCCeEEEEechhhHHH
Q 014017 315 FGDKKTYVIRVIELYANYREALVEAQADESEGADILLV---------KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMI 385 (432)
Q Consensus 315 ~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---------KPal~YLDII~~vk~~~~lPvaaYqVSGEYaMi 385 (432)
.+ ..+.+|+.+. ++.|||+|-+ |+..+-++.++++++. ++|+.|
T Consensus 134 --------~~----v~t~eea~~a----~~~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~-~ipvIA---------- 186 (232)
T 3igs_A 134 --------AD----CSSVDDGLAC----QRLGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA-GCRVIA---------- 186 (232)
T ss_dssp --------EE----CCSHHHHHHH----HHTTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT-TCCEEE----------
T ss_pred --------Ee----CCCHHHHHHH----HhCCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc-CCcEEE----------
Confidence 13 4455676543 4679999965 3445678999999998 999986
Q ss_pred HHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 386 KAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 386 kaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|-|.. .|-+..++.+|||.++
T Consensus 187 -----~GGI~t----~~d~~~~~~~GadgV~ 208 (232)
T 3igs_A 187 -----EGRYNS----PALAAEAIRYGAWAVT 208 (232)
T ss_dssp -----ESCCCS----HHHHHHHHHTTCSEEE
T ss_pred -----ECCCCC----HHHHHHHHHcCCCEEE
Confidence 344432 2334455677999876
No 30
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=90.59 E-value=3.9 Score=39.17 Aligned_cols=103 Identities=21% Similarity=0.226 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH------------------HHHHHHHHCCC--eEEEe
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR------------------TIWLLKDRYPD--LVIYT 217 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~r------------------aIr~iK~~fPd--l~Iit 217 (432)
...+.++.+.+.|+.-+-| |+ |- -|+.. ||++.| .++.+|+.+++ ++++
T Consensus 33 ~~~~~~~~l~~~GaD~iEl-gi-Pf--SDP~a------DGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm- 101 (267)
T 3vnd_A 33 LSLKIIQTLVDNGADALEL-GF-PF--SDPLA------DGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLL- 101 (267)
T ss_dssp HHHHHHHHHHHTTCSSEEE-EC-CC--SCCTT------CCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEE-
T ss_pred HHHHHHHHHHHcCCCEEEE-CC-CC--CCCCC------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE-
Confidence 5788999999999998877 73 52 44533 566644 35566666444 4444
Q ss_pred eecccCCCCCCcceeecCCCccccHHHHHH--HHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecc
Q 014017 218 DVALDPYSSDGHDGIVREDGVIMNDETVHQ--LCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 218 DVcLc~YTshGHcGIl~~~g~IdND~Tl~~--Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
.| + |. +.+ +.+-+-..++||+|.|--.|+=-.....+++++.++|..-+.+++-
T Consensus 102 -----~Y--------~-------np--v~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP 157 (267)
T 3vnd_A 102 -----LY--------A-------NL--VFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPP 157 (267)
T ss_dssp -----EC--------H-------HH--HHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECT
T ss_pred -----ec--------C-------cH--HHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECC
Confidence 12 0 11 111 2334455688999997667887788999999999999977777743
No 31
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=90.43 E-value=0.8 Score=40.74 Aligned_cols=143 Identities=19% Similarity=0.098 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCC---CC-----
Q 014017 245 VHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR---FG----- 316 (432)
Q Consensus 245 l~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~---~g----- 316 (432)
.+.+.+++-.+.++|+|+|-=-+|-...+..||+.-+..+. ++.| . .....+. .-.+.|+..--. +|
T Consensus 18 ~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~-~l~v-g-~g~~~~~--~~i~~a~~~Gad~V~~~~~~~~ 92 (212)
T 2v82_A 18 PDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGD-KALI-G-AGTVLKP--EQVDALARMGCQLIVTPNIHSE 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTT-TSEE-E-EECCCSH--HHHHHHHHTTCCEEECSSCCHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCC-CeEE-E-eccccCH--HHHHHHHHcCCCEEEeCCCCHH
Confidence 45667777777889999997755544556777776655442 2333 0 0000000 011122211100 01
Q ss_pred ---CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCC--CCeEEEEechhhHHHHHHHH
Q 014017 317 ---DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYP--LPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 317 ---DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~--lPvaaYqVSGEYaMikaAa~ 390 (432)
-++.|.++++.=..|..|+.+. .+.|+|+|.+.|..+ =++.++++++.++ +|+.+
T Consensus 93 ~~~~~~~~g~~~~~g~~t~~e~~~a----~~~G~d~v~v~~t~~~g~~~~~~l~~~~~~~ipvia--------------- 153 (212)
T 2v82_A 93 VIRRAVGYGMTVCPGCATATEAFTA----LEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFA--------------- 153 (212)
T ss_dssp HHHHHHHTTCEEECEECSHHHHHHH----HHTTCSEEEETTHHHHCHHHHHHHHTTSCTTCEEEE---------------
T ss_pred HHHHHHHcCCCEEeecCCHHHHHHH----HHCCCCEEEEecCCCCCHHHHHHHHHhccCCCeEEE---------------
Confidence 1122333322115677776433 457999999977421 2688888888775 88865
Q ss_pred CCCchhhHHHHHHHHHHHHcCccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|-++. |.+..++.+|||.|+
T Consensus 154 ~GGI~~-----~~i~~~~~~Ga~gv~ 174 (212)
T 2v82_A 154 VGGVTP-----ENLAQWIDAGCAGAG 174 (212)
T ss_dssp ESSCCT-----TTHHHHHHHTCSEEE
T ss_pred eCCCCH-----HHHHHHHHcCCCEEE
Confidence 355553 334456678999876
No 32
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=90.36 E-value=6.1 Score=35.93 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++++.++.+.+-|++.|-+ . .|++ + ..+.|+.+++ |++.+-+++.+
T Consensus 26 ~~~~~~~~l~~gGv~~iel-~-----~k~~--------~--~~~~i~~~~~--~~~~~gag~vl---------------- 71 (207)
T 2yw3_A 26 DLLGLARVLEEEGVGALEI-T-----LRTE--------K--GLEALKALRK--SGLLLGAGTVR---------------- 71 (207)
T ss_dssp CHHHHHHHHHHTTCCEEEE-E-----CSST--------H--HHHHHHHHTT--SSCEEEEESCC----------------
T ss_pred HHHHHHHHHHHcCCCEEEE-e-----CCCh--------H--HHHHHHHHhC--CCCEEEeCeEe----------------
Confidence 5889999999999998765 2 2322 1 2467888888 87776554422
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
+|| ++-.-.++|||.|- +.-.|-.|...++.+ |. |
T Consensus 72 --~~d--------~~~~A~~~GAd~v~-~~~~d~~v~~~~~~~---g~---------------------------~---- 106 (207)
T 2yw3_A 72 --SPK--------EAEAALEAGAAFLV-SPGLLEEVAALAQAR---GV---------------------------P---- 106 (207)
T ss_dssp --SHH--------HHHHHHHHTCSEEE-ESSCCHHHHHHHHHH---TC---------------------------C----
T ss_pred --eHH--------HHHHHHHcCCCEEE-cCCCCHHHHHHHHHh---CC---------------------------C----
Confidence 232 22223467999874 334565554433333 31 0
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
+-.- ..|..|+.+.. +.|||+|.+=|+... ++.|+.++..+ ++|+.+ .|-|
T Consensus 107 ---~i~G----~~t~~e~~~A~----~~Gad~v~~fpa~~~gG~~~lk~l~~~~~~ipvva---------------iGGI 160 (207)
T 2yw3_A 107 ---YLPG----VLTPTEVERAL----ALGLSALKFFPAEPFQGVRVLRAYAEVFPEVRFLP---------------TGGI 160 (207)
T ss_dssp ---EEEE----ECSHHHHHHHH----HTTCCEEEETTTTTTTHHHHHHHHHHHCTTCEEEE---------------BSSC
T ss_pred ---EEec----CCCHHHHHHHH----HCCCCEEEEecCccccCHHHHHHHHhhCCCCcEEE---------------eCCC
Confidence 1011 23557765443 569999999997655 68899999988 799976 5677
Q ss_pred hhhHHHHHHHHHHHHcCccEee
Q 014017 395 DEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+ .+..+..+||+.+.
T Consensus 161 ~~~-----n~~~~l~aGa~~va 177 (207)
T 2yw3_A 161 KEE-----HLPHYAALPNLLAV 177 (207)
T ss_dssp CGG-----GHHHHHTCSSBSCE
T ss_pred CHH-----HHHHHHhCCCcEEE
Confidence 754 44567889999764
No 33
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=90.16 E-value=4 Score=36.92 Aligned_cols=178 Identities=13% Similarity=0.173 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+.+.|+..+-+-.. | | .+.++... ..|+.|++.+ ++-++. |.||.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~------d--~--~~~~~~~~-~~i~~i~~~~-~ipv~v-----------~ggI~---- 85 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDL------D--A--AFGTGDNR-ALIAEVAQAM-DIKVEL-----------SGGIR---- 85 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEH------H--H--HHTSCCCH-HHHHHHHHHC-SSEEEE-----------ESSCC----
T ss_pred CHHHHHHHHHHcCCCEEEEecC------c--h--hhcCCChH-HHHHHHHHhc-CCcEEE-----------ECCcC----
Confidence 3788889999999999887542 1 1 12344555 7889998876 444443 33332
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
+-+. +....++|||.|.-.--.-.....+.+.+...| .++ +.+-..+- | -+.
T Consensus 86 ---~~~~-------~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g-~~~-~~~l~~~~-----g----~v~------- 137 (244)
T 1vzw_A 86 ---DDDT-------LAAALATGCTRVNLGTAALETPEWVAKVIAEHG-DKI-AVGLDVRG-----T----TLR------- 137 (244)
T ss_dssp ---SHHH-------HHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHG-GGE-EEEEEEET-----T----EEC-------
T ss_pred ---CHHH-------HHHHHHcCCCEEEECchHhhCHHHHHHHHHHcC-CcE-EEEEEccC-----C----EEE-------
Confidence 2222 333345899988632211122233555555555 333 33444431 1 000
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCC----chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHH
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~ 390 (432)
...++-. -.+..|.+++++ +.|+|.|.+ +|.. +-++.++++++..++||.|
T Consensus 138 ~~g~~~~----~~~~~e~~~~~~---~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia--------------- 195 (244)
T 1vzw_A 138 GRGWTRD----GGDLYETLDRLN---KEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVA--------------- 195 (244)
T ss_dssp CSSSCCC----CCBHHHHHHHHH---HTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEE---------------
T ss_pred EcCcccC----CCCHHHHHHHHH---hCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEE---------------
Confidence 1111111 114455555554 379997775 4443 3488999999999999976
Q ss_pred CCCchhhHHHHHHHHHHHHc---CccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRA---GADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRA---GAd~Ii 416 (432)
.|-+.. .|-+..++++ |||.++
T Consensus 196 ~GGI~~----~~d~~~~~~~~~~Gadgv~ 220 (244)
T 1vzw_A 196 SGGVSS----LDDLRAIAGLVPAGVEGAI 220 (244)
T ss_dssp ESCCCS----HHHHHHHHTTGGGTEEEEE
T ss_pred ECCCCC----HHHHHHHHhhccCCCceee
Confidence 344553 2344456677 999654
No 34
>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1
Probab=89.17 E-value=1.4 Score=42.91 Aligned_cols=117 Identities=24% Similarity=0.249 Sum_probs=73.2
Q ss_pred HcCCCeec----C-CCC----CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccC
Q 014017 257 RAGADVVS----P-SDM----MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIE 327 (432)
Q Consensus 257 ~AGADiVA----P-SDM----MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~ 327 (432)
++|||+|. . +|- |--.++.+++...+.|. -+-|+.|+- |+ ..+|.. +
T Consensus 119 ~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~-p~lv~~~~~-------g~---------~v~~~~----~--- 174 (304)
T 1to3_A 119 RDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGL-LSIIEPVVR-------PP---------RCGDKF----D--- 174 (304)
T ss_dssp HTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTC-EEEEEEEEC-------CC---------SSCSCC----C---
T ss_pred HcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCC-cEEEEEECC-------CC---------ccccCC----C---
Confidence 56999996 2 221 22566667777777775 456665532 21 123322 2
Q ss_pred CC-CCHHHHHHHHHhchhcCCcEEEEcCC-------CchhHHHHHHHhhCCCC-eEEEEechhhHHHHHHHHCCCchhhH
Q 014017 328 LY-ANYREALVEAQADESEGADILLVKPG-------LPYLDVIRLLRDKYPLP-IAAYQVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 328 ~p-~N~~EAlre~~~Di~EGAD~lMVKPa-------l~YLDII~~vk~~~~lP-vaaYqVSGEYaMikaAa~~G~id~~~ 398 (432)
| .+..++.+++. +-|||+|=|+|. ....++++.....+++| |.+ .|-+++ +
T Consensus 175 -~~~~v~~aa~~a~---~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~---------------aGG~~~-~ 234 (304)
T 1to3_A 175 -REQAIIDAAKELG---DSGADLYKVEMPLYGKGARSDLLTASQRLNGHINMPWVIL---------------SSGVDE-K 234 (304)
T ss_dssp -HHHHHHHHHHHHT---TSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEEC---------------CTTSCT-T
T ss_pred -hhHHHHHHHHHHH---HcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEE---------------ecCCCH-H
Confidence 3 45566666665 479999999995 12234444433347899 653 455564 4
Q ss_pred HHHHHHHHHHHcCccEeeh
Q 014017 399 VMMESLMCLRRAGADIILT 417 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiT 417 (432)
.++|.+...+++||+.++.
T Consensus 235 ~~~~~~~~a~~aGa~Gv~v 253 (304)
T 1to3_A 235 LFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp THHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHcCCeEEEE
Confidence 6789999999999999884
No 35
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=89.01 E-value=1.3 Score=42.75 Aligned_cols=192 Identities=19% Similarity=0.168 Sum_probs=112.8
Q ss_pred HcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcccc
Q 014017 168 DVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMN 241 (432)
Q Consensus 168 ~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdN 241 (432)
+.|++.+.+=|- +. .+..+.+.+++ ...++.|.+..+ +-|++|.=.- | =++
T Consensus 34 ~aG~~ai~vsg~s~a-------~~~G~pD~~~vt~~em~~~~~~I~~~~~-~pviaD~d~G-y--------------g~~ 90 (275)
T 2ze3_A 34 AAGFTAIGTTSAGIA-------HARGRTDGQTLTRDEMGREVEAIVRAVA-IPVNADIEAG-Y--------------GHA 90 (275)
T ss_dssp HHTCSCEEECHHHHH-------HHSCCCSSSSSCHHHHHHHHHHHHHHCS-SCEEEECTTC-S--------------SSS
T ss_pred HcCCCEEEECcHHHH-------HhCCCCCCCCCCHHHHHHHHHHHHhhcC-CCEEeecCCC-C--------------CCC
Confidence 469999887321 11 02233333443 356677777765 6788886332 2 122
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCC-------------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhh
Q 014017 242 DETVHQLCKQAVSQARAGADVVSPSDM-------------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA 308 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVAPSDM-------------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdA 308 (432)
-+ ...+.+-.+.++||+.|--.|= |=.+|.++|++-+..|. +.-|+.-+--|...
T Consensus 91 ~~---~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~-~~~i~aRtda~~~~-------- 158 (275)
T 2ze3_A 91 PE---DVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGV-PVFLNARTDTFLKG-------- 158 (275)
T ss_dssp HH---HHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTS-CCEEEEECCTTTTT--------
T ss_pred HH---HHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCC-CeEEEEechhhhcc--------
Confidence 22 3334445566799998877664 34688888888877775 55555554433221
Q ss_pred hhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHH
Q 014017 309 LDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 309 a~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaA 388 (432)
.|+| . -...+|+|+.+..=.+-|||+|++ |+.+-.|.++++.+..++|+- +..++..--.+.-
T Consensus 159 ------~g~~--~-------~~~~~~ai~Ra~ay~eAGAd~i~~-e~~~~~~~~~~i~~~~~~P~n-~~~~~~~~~~~eL 221 (275)
T 2ze3_A 159 ------HGAT--D-------EERLAETVRRGQAYADAGADGIFV-PLALQSQDIRALADALRVPLN-VMAFPGSPVPRAL 221 (275)
T ss_dssp ------CSSS--H-------HHHHHHHHHHHHHHHHTTCSEEEC-TTCCCHHHHHHHHHHCSSCEE-EECCTTSCCHHHH
T ss_pred ------cccc--c-------hhhHHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHhcCCCEE-EecCCCCCCHHHH
Confidence 1221 0 002368888887777779999988 567889999999999999994 4443322222344
Q ss_pred HHCCCc----------hhhHHHHHHHHHHHHcC
Q 014017 389 GALKMI----------DEQRVMMESLMCLRRAG 411 (432)
Q Consensus 389 a~~G~i----------d~~~~~~EsL~~ikRAG 411 (432)
.+.|+= ---..+.+.+..|++-|
T Consensus 222 ~~lGv~~v~~~~~~~raa~~a~~~~~~~i~~~g 254 (275)
T 2ze3_A 222 LDAGAARVSFGQSLMLATLGLVQRMAAELHAAE 254 (275)
T ss_dssp HHTTCSEEECTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCcEEEEChHHHHHHHHHHHHHHHHHHHhC
Confidence 444431 01234556666666655
No 36
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=88.71 E-value=4.2 Score=39.97 Aligned_cols=189 Identities=17% Similarity=0.263 Sum_probs=117.8
Q ss_pred HHHcCCCeEEEe--ecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 166 ARDVGVNSVVLF--PKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 166 ~~~~GI~sv~LF--gvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
+.+.|++.+.+= +. .. ....+.+.+++ ..-++.|.+..+++-|++|.=.- | |
T Consensus 34 ~e~aGf~ai~vsG~~~-a~------~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~G-y------------g- 92 (302)
T 3fa4_A 34 ALSAGFDALYMTGAGT-AA------SVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTG-Y------------G- 92 (302)
T ss_dssp HHTTTCSCEEECHHHH-HH------HHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTT-T------------S-
T ss_pred HHHcCCCEEEeCcHHH-HH------HHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCC-C------------C-
Confidence 445799998872 22 10 00123333443 24566676666788899986331 2 1
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCC-------------------CchHHHHHHHHHHCCCccceeecchhhhcc
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMM-------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYAS 299 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM-------------------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyAS 299 (432)
|.+ ...+.+-.+.++||+.|--.|-. =+||.|.|++-++.| .++-|++-+--|+.
T Consensus 93 --~~~---~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~-~d~~I~ARTDa~~~ 166 (302)
T 3fa4_A 93 --GPI---MVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIG-SDIVVIARTDSLQT 166 (302)
T ss_dssp --SHH---HHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHT-CCCEEEEEECCHHH
T ss_pred --CHH---HHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC-CCEEEEEEeccccc
Confidence 222 23444555678999988777653 147777777777666 47888887654421
Q ss_pred ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEe
Q 014017 300 SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQV 378 (432)
Q Consensus 300 sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqV 378 (432)
. ..+|||+.+..=.+-|||+|++ |++.-.|-|+++.+.+ ++|+-+=.+
T Consensus 167 ---------------------~---------gldeAi~Ra~ay~eAGAD~ifi-~g~~~~~ei~~~~~~~~~~Pl~~n~~ 215 (302)
T 3fa4_A 167 ---------------------H---------GYEESVARLRAARDAGADVGFL-EGITSREMARQVIQDLAGWPLLLNMV 215 (302)
T ss_dssp ---------------------H---------CHHHHHHHHHHHHTTTCSEEEE-TTCCCHHHHHHHHHHTTTSCEEEECC
T ss_pred ---------------------C---------CHHHHHHHHHHHHHcCCCEEee-cCCCCHHHHHHHHHHhcCCceeEEEe
Confidence 0 1369999999999999999999 7888899999999988 489866444
Q ss_pred c-hhhH--HHHHHHHCCCc----------hhhHHHHHHHHHHHHcCc
Q 014017 379 S-GEYS--MIKAGGALKMI----------DEQRVMMESLMCLRRAGA 412 (432)
Q Consensus 379 S-GEYa--MikaAa~~G~i----------d~~~~~~EsL~~ikRAGA 412 (432)
- |.+- -.+.-++.|+= ---..+.+.+..|++.|-
T Consensus 216 ~~g~~p~~~~~eL~~lGv~~v~~~~~~~raa~~A~~~~~~~i~~~g~ 262 (302)
T 3fa4_A 216 EHGATPSISAAEAKEMGFRIIIFPFAALGPAVAAMREAMEKLKRDGI 262 (302)
T ss_dssp TTSSSCCCCHHHHHHHTCSEEEETTTTHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCCCCHHHHHHcCCCEEEEchHHHHHHHHHHHHHHHHHHHcCC
Confidence 3 3331 12333444430 012456777777777664
No 37
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=88.64 E-value=5.8 Score=38.61 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=89.9
Q ss_pred HcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcccc
Q 014017 168 DVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMN 241 (432)
Q Consensus 168 ~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdN 241 (432)
+.|+..+.+=|- +.. +-.+.+-+++ ...++.|.+..+ +-|++|.=. |+ -|
T Consensus 37 ~aG~~ai~vsg~~~a~-------~lG~pD~~~vt~~em~~~~~~I~~~~~-~PviaD~d~---------------Gy-g~ 92 (295)
T 1s2w_A 37 EAGFKGIWGSGLSVSA-------QLGVRDSNEASWTQVVEVLEFMSDASD-VPILLDADT---------------GY-GN 92 (295)
T ss_dssp HHTCSCEEECCHHHHH-------TC---------CHHHHHHHHHHHHTCS-SCEEEECCS---------------SC-SS
T ss_pred HcCCCEEEeChHHHHH-------hCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEecCCC---------------CC-CC
Confidence 459999887321 110 1123222443 355666666543 337777532 21 12
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc----------hHHHHHHHHHHCCCccceeecchhhh-ccccc
Q 014017 242 DETVHQLCKQAVSQARAGADVVSPSDMM--------DG----------RVGAIRAALDAEGFQHVSIMSYTAKY-ASSFY 302 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DG----------rV~aIR~aLD~~Gf~~v~ImSYSaKy-ASsfY 302 (432)
. ....+.+-.+.++||+.|--.|=. .| .+..||.+.+.....+.-|+.-+--+ +.
T Consensus 93 ~---~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~--- 166 (295)
T 1s2w_A 93 F---NNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAG--- 166 (295)
T ss_dssp H---HHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTT---
T ss_pred H---HHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcc---
Confidence 2 234455566678999998877654 22 15666666665533344444433322 10
Q ss_pred hhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC--CCeEE
Q 014017 303 GPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP--LPIAA 375 (432)
Q Consensus 303 GPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~--lPvaa 375 (432)
...+|+|+.+..=.+-|||+|++.+..+-.+.++++.+..+ +|+.+
T Consensus 167 ---------------------------~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~~P~i~ 214 (295)
T 1s2w_A 167 ---------------------------WGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWNNQGPVVI 214 (295)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHTTCSCEEE
T ss_pred ---------------------------ccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcCCCCCEEE
Confidence 12479999999889999999999987888999999999887 99964
No 38
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=88.47 E-value=5.1 Score=36.00 Aligned_cols=182 Identities=16% Similarity=0.210 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+.+.|+..+-+... +. .+.++... ..|+.|++.+ ++-++. |.||.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~--d~--------~~~~~~~~-~~i~~i~~~~-~ipv~v-----------~ggi~---- 84 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDL--DA--------AFGRGSNH-ELLAEVVGKL-DVQVEL-----------SGGIR---- 84 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEH--HH--------HTTSCCCH-HHHHHHHHHC-SSEEEE-----------ESSCC----
T ss_pred CHHHHHHHHHHcCCCEEEEEcC--cc--------cccCCChH-HHHHHHHHhc-CCcEEE-----------ECCCC----
Confidence 3788899999999999988642 11 12233344 7888998876 444442 33332
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGD 317 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gD 317 (432)
+-+. +....++|||.|.-.--.-.....+++.+...| .+ .+++-..+-.. |.++ + .-
T Consensus 85 ---~~~~-------~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g-~~-~~~~ld~~~~~---~~~~--v------~~ 141 (244)
T 2y88_A 85 ---DDES-------LAAALATGCARVNVGTAALENPQWCARVIGEHG-DQ-VAVGLDVQIID---GEHR--L------RG 141 (244)
T ss_dssp ---SHHH-------HHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHG-GG-EEEEEEEEEET---TEEE--E------EE
T ss_pred ---CHHH-------HHHHHHcCCCEEEECchHhhChHHHHHHHHHcC-CC-EEEEEeccccC---CCCE--E------EE
Confidence 2222 333345899998643222122233455555555 22 23333332110 0000 0 00
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCC----chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHH
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGA 390 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~ 390 (432)
| .++-+ ..+..|.+++++ +.|+|.|.+ ++.. +-++.++++++..++||.+
T Consensus 142 ~-g~~~~----~~~~~e~~~~~~---~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia--------------- 198 (244)
T 2y88_A 142 R-GWETD----GGDLWDVLERLD---SEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIA--------------- 198 (244)
T ss_dssp G-GGTEE----EEEHHHHHHHHH---HTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEE---------------
T ss_pred C-CccCC----CCCHHHHHHHHH---hCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEE---------------
Confidence 1 11111 113345444443 469999887 4432 3478999999988999876
Q ss_pred CCCchhhHHHHHHHHHHHHc---CccEee
Q 014017 391 LKMIDEQRVMMESLMCLRRA---GADIIL 416 (432)
Q Consensus 391 ~G~id~~~~~~EsL~~ikRA---GAd~Ii 416 (432)
.|-+... |-+..++.+ |||.++
T Consensus 199 ~GGI~~~----~d~~~~~~~~~~Gad~v~ 223 (244)
T 2y88_A 199 SGGVSSL----DDLRAIATLTHRGVEGAI 223 (244)
T ss_dssp ESCCCSH----HHHHHHHTTGGGTEEEEE
T ss_pred ECCCCCH----HHHHHHHhhccCCCCEEE
Confidence 4445532 334456666 898654
No 39
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=88.46 E-value=4.1 Score=39.83 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=96.4
Q ss_pred CC-CceeechhhhHHHHHHHHHH-cCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 147 MP-GCYRLGWRHGLVQEVAKARD-VGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 147 MP-Gv~r~si~~~l~~~v~~~~~-~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
|| |=|..+.. ..++-+.++++ .|...|-|=|- .-+...|+.+.++- +=|+..+-|-|=
T Consensus 102 ~pfgsy~~s~~-~a~~na~rl~~eaGa~aVklEdg-----------------~e~~~~I~al~~ag--IpV~gHiGLtPq 161 (281)
T 1oy0_A 102 LPFGSYEAGPT-AALAAATRFLKDGGAHAVKLEGG-----------------ERVAEQIACLTAAG--IPVMAHIGFTPQ 161 (281)
T ss_dssp CCTTSSTTCHH-HHHHHHHHHHHTTCCSEEEEEBS-----------------GGGHHHHHHHHHHT--CCEEEEEECCC-
T ss_pred CCCCcccCCHH-HHHHHHHHHHHHhCCeEEEECCc-----------------HHHHHHHHHHHHCC--CCEEeeecCCcc
Confidence 55 34555554 46666666665 88888887431 13567888888774 446777777776
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchh-hhccccch
Q 014017 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA-KYASSFYG 303 (432)
Q Consensus 225 TshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa-KyASsfYG 303 (432)
+.|-..|..-. |+ .| ..+.+.+.|..+.+||||+|-+-.+-.--..+|.++| +++++..-+ .++..=+=
T Consensus 162 sv~~~ggf~v~-gr--t~-~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l------~iP~igIGaG~~~dgQvL 231 (281)
T 1oy0_A 162 SVNTLGGFRVQ-GR--GD-AAEQTIADAIAVAEAGAFAVVMEMVPAELATQITGKL------TIPTVGIGAGPNCDGQVL 231 (281)
T ss_dssp ----------------CH-HHHHHHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHC------SSCEEEESSCSCSSEEEE
T ss_pred eecccCCeEEE-eC--cH-HHHHHHHHHHHHHHcCCcEEEEecCCHHHHHHHHHhC------CCCEEEeCCCCCCCccee
Confidence 66655454322 32 34 6689999999999999999988776544455555555 377777643 46665555
Q ss_pred hhhhhhhCC----CCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 304 PFREALDSN----PRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 304 PFRdAa~Sa----p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
-+-|.++-. |+|- |.|--- -.-..+|+++-..|+.+|.
T Consensus 232 V~~D~lG~~~~~~pkf~--k~y~~~----~~~~~~a~~~y~~~V~~~~ 273 (281)
T 1oy0_A 232 VWQDMAGFSGAKTARFV--KRYADV----GGELRRAAMQYAQEVAGGV 273 (281)
T ss_dssp CHHHHTTCSCSCCCTTC--CCCCCH----HHHHHHHHHHHHHHHHTTC
T ss_pred eHhhhcCCCCCCCCCch--hhhhhh----HHHHHHHHHHHHHHHhcCC
Confidence 667777654 4442 233210 1113466666667777764
No 40
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=88.14 E-value=4.5 Score=39.28 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------
Q 014017 195 DNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------ 268 (432)
Q Consensus 195 ~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------ 268 (432)
..|+|++ ++.++..|..++.. .+-||+ +||.||-|. ++.|.+ -+.++|+|-|.+.+.
T Consensus 11 ~~~~~~~-~~~m~~~~~Gv~~a---~vTPf~---------~dg~iD~~~-l~~lv~---~li~~Gv~Gi~v~GtTGE~~~ 73 (315)
T 3na8_A 11 SSGLVPR-GSHMSASIHGIIGY---TITPFA---------ADGGLDLPA-LGRSIE---RLIDGGVHAIAPLGSTGEGAY 73 (315)
T ss_dssp -------------CCCCEEEEE---CCCCBC---------TTSSBCHHH-HHHHHH---HHHHTTCSEEECSSGGGTGGG
T ss_pred ccCcCCC-chhcccccCceEEE---eeCcCC---------CCCCcCHHH-HHHHHH---HHHHcCCCEEEECccccChhh
Confidence 3567763 45555566554443 366774 467887443 344433 455799998877653
Q ss_pred --CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC
Q 014017 269 --MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG 346 (432)
Q Consensus 269 --MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG 346 (432)
.+=|...++.+.+..+ .+++|+.-. | -.|.+|++..+..=.+-|
T Consensus 74 Ls~~Er~~v~~~~v~~~~-grvpViaGv---------------------g------------~~~t~~ai~la~~A~~~G 119 (315)
T 3na8_A 74 LSDPEWDEVVDFTLKTVA-HRVPTIVSV---------------------S------------DLTTAKTVRRAQFAESLG 119 (315)
T ss_dssp SCHHHHHHHHHHHHHHHT-TSSCBEEEC---------------------C------------CSSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhC-CCCcEEEec---------------------C------------CCCHHHHHHHHHHHHhcC
Confidence 3456666776666653 246655432 1 125678888877777789
Q ss_pred CcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEech
Q 014017 347 ADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 347 AD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 380 (432)
||.+||=|-..| .+-.+.+.+..++||.-|++-+
T Consensus 120 adavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 160 (315)
T 3na8_A 120 AEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPG 160 (315)
T ss_dssp CSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHH
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 999999765332 4445567778899999999754
No 41
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=87.73 E-value=2.4 Score=40.48 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=35.8
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEc------------------------------CC--------CchhHH
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVK------------------------------PG--------LPYLDV 361 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK------------------------------Pa--------l~YLDI 361 (432)
.|-+.++.-..|..|+.+. +++|||+|.++ .. ..-++.
T Consensus 123 ~~g~~v~~~~~~~~e~~~a----~~~Gad~V~~~G~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~ 198 (305)
T 2nv1_A 123 EYTVPFVCGCRDLGEATRR----IAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKNLGAPYEL 198 (305)
T ss_dssp GCSSCEEEEESSHHHHHHH----HHTTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHH
T ss_pred ccCCcEEEEeCCHHHHHHH----HHCCCCEEEeccccCccchHHHHhhhhhhhccchhhccccchhhhcccccccccHHH
Confidence 4555555556788887765 36899999993 22 123688
Q ss_pred HHHHHhhCCCCeE
Q 014017 362 IRLLRDKYPLPIA 374 (432)
Q Consensus 362 I~~vk~~~~lPva 374 (432)
++.+++..++||.
T Consensus 199 i~~i~~~~~iPvi 211 (305)
T 2nv1_A 199 LLQIKKDGKLPVV 211 (305)
T ss_dssp HHHHHHHTSCSSC
T ss_pred HHHHHHhcCCCEE
Confidence 8999888888986
No 42
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=87.72 E-value=3.6 Score=41.85 Aligned_cols=225 Identities=16% Similarity=0.132 Sum_probs=134.6
Q ss_pred hHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCc
Q 014017 158 GLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 158 ~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~---A~n~~g~v~raIr~iK~~fP--dl~IitDVcLc~YTshGH 229 (432)
++++.+.+ -++.|-.-+.- |+.-....+ ..|-+ ...-.-+..+|+++.|+.-- +.+|..++ .||..
T Consensus 54 e~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~-~~G~~~~~~~~~~eln~~Av~LAreAa~~~~~~VAGsI--GP~g~--- 127 (406)
T 1lt8_A 54 EAVRQLHREFLRAGSNVMQTFTFYASEDKLE-NRGNYVLEKISGQEVNEAAADIARQVADEGDALVAGGV--SQTPS--- 127 (406)
T ss_dssp HHHHHHHHHHHHTTCSEEECSCTTCSSCC--------------CHHHHHHHHHHHHHHHTTTTCEEEEEE--CCCHH---
T ss_pred HHHHHHHHHHHHhCccceeccccccCHHHHH-hcCCccchhHHHHHHHHHHHHHHHHHHhcCCCEEEEEc--CCccc---
Confidence 45566654 68999884433 664222221 22210 12223467889999987642 26677665 68843
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccceee-cchhhhccccchhhhh
Q 014017 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIM-SYTAKYASSFYGPFRE 307 (432)
Q Consensus 230 cGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~Im-SYSaKyASsfYGPFRd 307 (432)
+. +.++-|+-.+...+|+-.++++|+|+++---|.| -.+.++.+++.+.| ++|| |++.. .+
T Consensus 128 ---~l--~~~s~eel~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~---lPv~iS~T~~---------~~ 190 (406)
T 1lt8_A 128 ---YL--SAKSETEVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG---KPVAATMAIG---------PE 190 (406)
T ss_dssp ---HH--TTCHHHHHHHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT---SCEEEEECCB---------TT
T ss_pred ---cc--CCCCHHHHHHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC---CcEEEEEEEC---------CC
Confidence 11 3466788888889999999999999999999988 55666667776655 3443 33210 00
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC-c--hhHHHHHHHhhC-----CCCeEEEEec
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL-P--YLDVIRLLRDKY-----PLPIAAYQVS 379 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal-~--YLDII~~vk~~~-----~lPvaaYqVS 379 (432)
|. ++ =.+..++...+. + -|+|.|.|==+. | -+.+|+.+++.. +.|+.+|=-+
T Consensus 191 --------G~-----l~----G~~~~~~~~~l~-~--~~~~avGvNC~~gP~~~~~~l~~l~~~~~~~g~~~pl~vyPNa 250 (406)
T 1lt8_A 191 --------GD-----LH----GVPPGEAAVRLV-K--AGASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLA 250 (406)
T ss_dssp --------BC-----TT----CCCHHHHHHHHH-T--TTCSEEEEESSSCHHHHHHHHHHHHHHHHTTTCCCEEEEECCS
T ss_pred --------CC-----cC----CCcHHHHHHHhh-c--CCCCEEEecCCCCHHHHHHHHHHHHHhhhhcCCCccEEEecCC
Confidence 11 33 334455555543 2 479999997753 4 467777777543 7999999998
Q ss_pred hhhHHHHHHHHCCCchhh------------H-HHHHHHHHHHHcCccEee-----h-hcHHHHHHHHh
Q 014017 380 GEYSMIKAGGALKMIDEQ------------R-VMMESLMCLRRAGADIIL-----T-YFALQAARCLC 428 (432)
Q Consensus 380 GEYaMikaAa~~G~id~~------------~-~~~EsL~~ikRAGAd~Ii-----T-YfA~~~a~wL~ 428 (432)
|+..-. ..++|.+.. + -+.+....+..+|+.+|= | .+-..++++|.
T Consensus 251 g~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~Ga~iIGGCCGTtPeHI~aia~~l~ 315 (406)
T 1lt8_A 251 YHTPDA---NKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELA 315 (406)
T ss_dssp BCCTTC---CTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHHTEEEECCCTTCCHHHHHHHHHHTH
T ss_pred CCCCcC---CcccccCCccccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHh
Confidence 763211 145665311 1 256666677888999873 1 23344555554
No 43
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=87.47 E-value=5 Score=39.02 Aligned_cols=109 Identities=20% Similarity=0.282 Sum_probs=72.2
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-|. ++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 35 ~~dg~iD~~~-l~~li---~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-grvpViaGv----------- 98 (315)
T 3si9_A 35 DDNGAIDEKA-FCNFV---EWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVA-KRVPVVAGA----------- 98 (315)
T ss_dssp CTTSCBCHHH-HHHHH---HHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEEC-----------
T ss_pred CCCCCcCHHH-HHHHH---HHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhC-CCCcEEEeC-----------
Confidence 3467887443 33333 3456799999877663 4456677777776654 256666432
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
| -.|.+|++..+..=.+-|||.+||=|=..| .+-.+.+.+..++||.-|++
T Consensus 99 ----------g------------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 99 ----------G------------SNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp ----------C------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred ----------C------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 1 125678888777777789999998764322 34445677788999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 157 P~ 158 (315)
T 3si9_A 157 PS 158 (315)
T ss_dssp HH
T ss_pred ch
Confidence 55
No 44
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=87.44 E-value=4.2 Score=38.81 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=70.9
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+ .++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 14 ~~dg~iD~~-~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 78 (292)
T 2ojp_A 14 DEKGNVCRA-SLKKLID---YHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLAD-GRIPVIAGTG---------- 78 (292)
T ss_dssp CTTSCBCHH-HHHHHHH---HHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 356788744 3444444 455689999877653 2246777777776654 2566664321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++
T Consensus 79 -----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 79 -----------------------ANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp -----------------------CSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred -----------------------CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 235688888877777789999999664322 34445677788999999997
Q ss_pred c
Q 014017 379 S 379 (432)
Q Consensus 379 S 379 (432)
-
T Consensus 136 P 136 (292)
T 2ojp_A 136 P 136 (292)
T ss_dssp H
T ss_pred c
Confidence 3
No 45
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=87.23 E-value=5 Score=38.87 Aligned_cols=165 Identities=21% Similarity=0.265 Sum_probs=106.6
Q ss_pred CCC-ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 014017 147 MPG-CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (432)
Q Consensus 147 MPG-v~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT 225 (432)
||- =|. +.. ..++-+.++.+.|...|-|=|- .-+...|+.+.++- +=|+.=+-|-|=+
T Consensus 85 ~pfgsy~-~~~-~a~~~a~rl~kaGa~aVklEgg-----------------~e~~~~I~al~~ag--ipV~gHiGLtPq~ 143 (264)
T 1m3u_A 85 LPFMAYA-TPE-QAFENAATVMRAGANMVKIEGG-----------------EWLVETVQMLTERA--VPVCGHLGLTPQS 143 (264)
T ss_dssp CCTTSSS-SHH-HHHHHHHHHHHTTCSEEECCCS-----------------GGGHHHHHHHHHTT--CCEEEEEESCGGG
T ss_pred CCCCCcC-CHH-HHHHHHHHHHHcCCCEEEECCc-----------------HHHHHHHHHHHHCC--CCeEeeecCCcee
Confidence 664 455 774 6888889999999999877331 13567888888764 3344333344433
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchh-hhccccchh
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA-KYASSFYGP 304 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa-KyASsfYGP 304 (432)
.|-..|..- -| ..|+..+.+.+.|..+.+||||+|-+-.+-.--..+|.++| +++++..-+ .+++.=+=-
T Consensus 144 v~~~ggf~v-~g--rt~~~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~it~~l------~iP~igIGag~~~dgQvLV 214 (264)
T 1m3u_A 144 VNIFGGYKV-QG--RGDEAGDQLLSDALALEAAGAQLLVLECVPVELAKRITEAL------AIPVIGIGAGNVTDGQILV 214 (264)
T ss_dssp HHHHTSSCC-CC--CSHHHHHHHHHHHHHHHHHTCCEEEEESCCHHHHHHHHHHC------SSCEEEESSCTTSSEEEEC
T ss_pred ecccCCeEE-Ee--CCHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHhC------CCCEEEeCCCCCCCcceee
Confidence 222222221 12 24667799999999999999999988776544455555555 377777643 466665556
Q ss_pred hhhhhhCC----CCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 305 FREALDSN----PRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 305 FRdAa~Sa----p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
+-|.++-. |+|- |.|--- -.-..+|+++-..|+.+|.
T Consensus 215 ~~D~lG~~~~~~pkf~--k~y~~~----~~~~~~a~~~y~~~V~~~~ 255 (264)
T 1m3u_A 215 MHDAFGITGGHIPKFA--KNFLAE----TGDIRAAVRQYMAEVESGV 255 (264)
T ss_dssp HHHHTTCSCSSCCTTC--CCSSTT----TSSHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCCCCCCCCcc--hhhhhh----HHHHHHHHHHHHHHHhcCC
Confidence 67777644 5552 455321 3447899999999998875
No 46
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=86.98 E-value=4.5 Score=39.83 Aligned_cols=188 Identities=18% Similarity=0.234 Sum_probs=117.7
Q ss_pred HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCC
Q 014017 166 ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 166 ~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fP-dl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+.+.|++.+.+ ++. .. ....+.+.+++ ...++.|....+ ++-|++|.=.- | |
T Consensus 41 ~e~aGf~ai~vsG~~~-a~------s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~G-y------------g 100 (307)
T 3lye_A 41 AMELGFKSLYMTGAGT-TA------SRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTG-Y------------G 100 (307)
T ss_dssp HHHTTCSCEEECHHHH-HH------HHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTC-S------------S
T ss_pred HHHcCCCEEEeccHHH-HH------HhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCCC-C------------C
Confidence 44579999888 222 10 00123333332 345666766666 67889886331 2 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------------------chHHHHHHHHHHCCCccceeecchhhhc
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------------------GRVGAIRAALDAEGFQHVSIMSYTAKYA 298 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-------------------GrV~aIR~aLD~~Gf~~v~ImSYSaKyA 298 (432)
|.+ ...+.+-.+.++||+.|--.|-.- .||.|.|++-++.| .+.-|++-+--|+
T Consensus 101 ---~~~---~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~-~d~~I~ARTDa~~ 173 (307)
T 3lye_A 101 ---GPI---MVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLR-SDFVLIARTDALQ 173 (307)
T ss_dssp ---SHH---HHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTT-CCCEEEEEECCHH
T ss_pred ---CHH---HHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcC-CCeEEEEechhhh
Confidence 222 233445556789999887777531 57778888877777 4788888765443
Q ss_pred cccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC-CCeEEEE
Q 014017 299 SSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQ 377 (432)
Q Consensus 299 SsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~-lPvaaYq 377 (432)
. . ..+|||+.+..=.+-|||+|++ |++.-.|-++++.+.++ +|+.+=.
T Consensus 174 ~---------------------~---------gldeAi~Ra~ay~eAGAD~ifi-~~~~~~~~~~~i~~~~~~~Pv~~n~ 222 (307)
T 3lye_A 174 S---------------------L---------GYEECIERLRAARDEGADVGLL-EGFRSKEQAAAAVAALAPWPLLLNS 222 (307)
T ss_dssp H---------------------H---------CHHHHHHHHHHHHHTTCSEEEE-CCCSCHHHHHHHHHHHTTSCBEEEE
T ss_pred c---------------------c---------CHHHHHHHHHHHHHCCCCEEEe-cCCCCHHHHHHHHHHccCCceeEEe
Confidence 1 0 1369999999999999999999 58888999999999885 9996644
Q ss_pred ec-hhhH--HHHHHHHCCCch-----------hhHHHHHHHHHHHHcCc
Q 014017 378 VS-GEYS--MIKAGGALKMID-----------EQRVMMESLMCLRRAGA 412 (432)
Q Consensus 378 VS-GEYa--MikaAa~~G~id-----------~~~~~~EsL~~ikRAGA 412 (432)
+. |.+- -.+.-++.|+ . --..+.+.+..|++.|-
T Consensus 223 ~~~g~~p~~t~~eL~~lGv-~~v~~~~~~~raa~~a~~~~~~~l~~~g~ 270 (307)
T 3lye_A 223 VENGHSPLITVEEAKAMGF-RIMIFSFATLAPAYAAIRETLVRLRDHGV 270 (307)
T ss_dssp ETTSSSCCCCHHHHHHHTC-SEEEEETTTHHHHHHHHHHHHHHHHHHSC
T ss_pred ecCCCCCCCCHHHHHHcCC-eEEEEChHHHHHHHHHHHHHHHHHHHhCC
Confidence 43 3321 1233344443 1 12456677777776664
No 47
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=86.88 E-value=1.3 Score=39.91 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=36.8
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE-------cCCCchhHHHHHHHhhCCCCeEE
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLV-------KPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV-------KPal~YLDII~~vk~~~~lPvaa 375 (432)
||+.+|+.- .+..|..+.. .+.|||.|-| .+...+ ++|+++++.+++|+.+
T Consensus 22 g~~~~~~~~-----~d~~~~a~~~---~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v 79 (244)
T 2y88_A 22 GKAGSQTEY-----GSAVDAALGW---QRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVEL 79 (244)
T ss_dssp TEEEEEEEE-----EEHHHHHHHH---HHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEE
T ss_pred cccccceec-----CCHHHHHHHH---HHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEE
Confidence 667777652 3555544433 3569999988 356666 9999999999999876
No 48
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=86.64 E-value=6.6 Score=37.75 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=70.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------M--DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||- +.++.|++ -+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.-.
T Consensus 29 ~~dg~iD~-~~l~~lv~---~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGv----------- 92 (304)
T 3cpr_A 29 TESGDIDI-AAGREVAA---YLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG-DRAKLIAGV----------- 92 (304)
T ss_dssp CTTSCBCH-HHHHHHHH---HHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT-TTSEEEEEC-----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEecC-----------
Confidence 34677874 34444444 456789998876542 2 246777777776654 356666431
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
| -.|.+|++..+..=.+-|||.+||=|-..| .+=.+.+.+.+++||..|++
T Consensus 93 ----------g------------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 93 ----------G------------TNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp ----------C------------CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred ----------C------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 236688888777667789999998664222 34445667788999999997
Q ss_pred c
Q 014017 379 S 379 (432)
Q Consensus 379 S 379 (432)
-
T Consensus 151 P 151 (304)
T 3cpr_A 151 P 151 (304)
T ss_dssp H
T ss_pred c
Confidence 3
No 49
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=86.41 E-value=5.7 Score=35.95 Aligned_cols=108 Identities=15% Similarity=0.125 Sum_probs=67.5
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCC
Q 014017 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYA 330 (432)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~ 330 (432)
.+-...++|||.|.-.++-......+.+.+.+.|..-+..+ + |.
T Consensus 100 ~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i--------------------------------~----~~ 143 (248)
T 1geq_A 100 FLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLA--------------------------------A----PN 143 (248)
T ss_dssp HHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEE--------------------------------C----TT
T ss_pred HHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEE--------------------------------C----CC
Confidence 33345678999988777777777778888888885322211 3 44
Q ss_pred CHHHHHHHHHhchhcCCc-EE--EEcCCC--------c-hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhH
Q 014017 331 NYREALVEAQADESEGAD-IL--LVKPGL--------P-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD-~l--MVKPal--------~-YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~ 398 (432)
+..|.+++.. +++| +| |-.|+. + -++.|+++++.+++|+.+ -|-++..
T Consensus 144 t~~e~~~~~~----~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~---------------~GGI~~~- 203 (248)
T 1geq_A 144 TPDERLKVID----DMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAV---------------GFGVSKR- 203 (248)
T ss_dssp CCHHHHHHHH----HHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEE---------------ESCCCSH-
T ss_pred CHHHHHHHHH----hcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEE---------------EeecCCH-
Confidence 5566665544 3466 44 333541 2 378999999988999864 3445542
Q ss_pred HHHHHHHHHHHcCccEeeh
Q 014017 399 VMMESLMCLRRAGADIILT 417 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiT 417 (432)
|.+..++.+|||.++.
T Consensus 204 ---e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 204 ---EHVVSLLKEGANGVVV 219 (248)
T ss_dssp ---HHHHHHHHTTCSEEEE
T ss_pred ---HHHHHHHHcCCCEEEE
Confidence 3344566789997653
No 50
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=86.07 E-value=6.4 Score=38.28 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=113.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVc 220 (432)
|||+|=... ..-+-+.|++.+.+=|- +.. +..+.+-+++ ...++.|.+..+ +-|++|.=
T Consensus 19 ~~~a~D~~s-------A~~~~~aG~~ai~vs~~~~a~-------~~G~pD~~~vt~~em~~~~~~I~~~~~-~PviaD~d 83 (290)
T 2hjp_A 19 AMAAHNPLV-------AKLAEQAGFGGIWGSGFELSA-------SYAVPDANILSMSTHLEMMRAIASTVS-IPLIADID 83 (290)
T ss_dssp EEECSSHHH-------HHHHHHHTCSEEEECHHHHHH-------HTTSCTTTCSCHHHHHHHHHHHHTTCS-SCEEEECT
T ss_pred EecCCCHHH-------HHHHHHcCCCEEEEChHHHHH-------hCCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEECC
Confidence 677754432 22233479999888331 111 1233333443 355666666554 33677753
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-------c-----------hHHHHHHHHHH
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------G-----------RVGAIRAALDA 282 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-------G-----------rV~aIR~aLD~ 282 (432)
. |+ -|- +...+.+-.+.++||+.|--.|=.- | .+..||.+.+.
T Consensus 84 ~---------------Gy-g~~---~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a 144 (290)
T 2hjp_A 84 T---------------GF-GNA---VNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA 144 (290)
T ss_dssp T---------------TT-SSH---HHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHH
T ss_pred C---------------CC-CCH---HHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHh
Confidence 2 31 122 2344455566679999987766531 1 14455555554
Q ss_pred CCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHH
Q 014017 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVI 362 (432)
Q Consensus 283 ~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII 362 (432)
....+.-|+.-+--+. . ....+|+|+.+..=.+-|||+|++.=..+-.|.+
T Consensus 145 ~~~~~~~i~aRtda~~-----------------------a------~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~ 195 (290)
T 2hjp_A 145 RADRDFVVIARVEALI-----------------------A------GLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEI 195 (290)
T ss_dssp CSSTTSEEEEEECTTT-----------------------T------TCCHHHHHHHHHHHHHTTCSEEEECCCCSSSHHH
T ss_pred cccCCcEEEEeehHhh-----------------------c------cccHHHHHHHHHHHHHcCCcEEEeCCCCCCHHHH
Confidence 3322334444332220 0 1125789999888778899999985437889999
Q ss_pred HHHHhhCC--CCeEEEEechhhHHHHHHHHCC-----------CchhhHHHHHHHHHHHHcC
Q 014017 363 RLLRDKYP--LPIAAYQVSGEYSMIKAGGALK-----------MIDEQRVMMESLMCLRRAG 411 (432)
Q Consensus 363 ~~vk~~~~--lPvaaYqVSGEYaMikaAa~~G-----------~id~~~~~~EsL~~ikRAG 411 (432)
+++.+..+ +|+.+--+++..--.+.-++.| +----..+.+.+..|++.|
T Consensus 196 ~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~~~~~raa~~a~~~~~~~i~~~g 257 (290)
T 2hjp_A 196 LAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAVGAVREVFARIRRDG 257 (290)
T ss_dssp HHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEECSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEechHHHHHHHHHHHHHHHHHHHcC
Confidence 99999998 9999833434333334555566 1111245666677777665
No 51
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=85.93 E-value=5 Score=32.23 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+..... +..|+|++= |.+.-+++++.+++.. .+|+..+.-..+...+..+.+.|..+. .+
T Consensus 47 ~~~~~~a~~~l~~---~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~ 123 (152)
T 3eul_A 47 ADDGAAALELIKA---HLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRT 123 (152)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHH
T ss_pred eCCHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHH
Confidence 5577888877653 468999986 6777899999999876 599999988888888888888887542 34
Q ss_pred HHHHHHHHHHHcCccEeehhcHHHHHHHHhc
Q 014017 399 VMMESLMCLRRAGADIILTYFALQAARCLCG 429 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~~ 429 (432)
-+.+.+..+.+-+ .|+.++++..|.+
T Consensus 124 ~l~~~i~~~~~~~-----~~~~~~~~~~l~~ 149 (152)
T 3eul_A 124 EIVKAVLDCAKGR-----DVVAPSLVGGLAG 149 (152)
T ss_dssp HHHHHHHHHHHCC------------------
T ss_pred HHHHHHHHHHcCC-----eeeCHHHHHHHhh
Confidence 5566666665544 4666666655543
No 52
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=85.34 E-value=1.8 Score=41.36 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=30.2
Q ss_pred HHHHhchhcCCcEEEEcCCCch---------------------------hHHHHHHHhhCCCCeEEE
Q 014017 337 VEAQADESEGADILLVKPGLPY---------------------------LDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 337 re~~~Di~EGAD~lMVKPal~Y---------------------------LDII~~vk~~~~lPvaaY 376 (432)
.+...-++||||+|.+ +.|| +++|+++|+..++|+...
T Consensus 33 ~~~~~~l~~~aD~IEl--G~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m 97 (271)
T 1ujp_A 33 LQAVEEVLPYADLLEI--GLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLM 97 (271)
T ss_dssp HHHHHHHGGGCSSEEE--ECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHhcCCEEEE--CCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 3344556777999999 7777 478999999989999993
No 53
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=85.17 E-value=13 Score=36.86 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=98.9
Q ss_pred HHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 166 ARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 166 ~~~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
+.+.|++.+.+=|- +.. .+..+.+-+++ ...++.|.+..|++-|++|.=.- | |
T Consensus 55 ~e~aGfdai~vs~~~~a~------~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~G-y------------g-- 113 (318)
T 1zlp_A 55 VEKTGFHAAFVSGYSVSA------AMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTG-G------------G-- 113 (318)
T ss_dssp HHHTTCSEEEECHHHHHH------HHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTC-S------------S--
T ss_pred HHHcCCCEEEECcHHHhh------HhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCC-C------------C--
Confidence 34579999888331 110 01123222333 46778888889999999996332 2 1
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCC-------------------CchHHHHHHHHHHCCCccceeecchhhhccc
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMM-------------------DGRVGAIRAALDAEGFQHVSIMSYTAKYASS 300 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMM-------------------DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASs 300 (432)
|.+ ...+.+-.+.++||+.|--.|=. =.||.++|++.+. .+.-|+.-+--++.
T Consensus 114 -~~~---~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~---~~~~I~ARtda~a~- 185 (318)
T 1zlp_A 114 -GPL---NVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGD---SDFFLVARTDARAP- 185 (318)
T ss_dssp -SHH---HHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTT---SCCEEEEEECTHHH-
T ss_pred -CHH---HHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhccc---CCcEEEEeeHHhhh-
Confidence 222 23344455667999888766542 2366666666653 23445544433320
Q ss_pred cchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEec
Q 014017 301 FYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 301 fYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVS 379 (432)
. ..+|+|+.+..=.+-|||+|++. +.+-.|.++++.+..++|+.+.-+.
T Consensus 186 -----------------------~------gl~~ai~Ra~Ay~eAGAd~i~~e-~~~~~e~~~~i~~~l~~P~lan~~~ 234 (318)
T 1zlp_A 186 -----------------------H------GLEEGIRRANLYKEAGADATFVE-APANVDELKEVSAKTKGLRIANMIE 234 (318)
T ss_dssp -----------------------H------HHHHHHHHHHHHHHTTCSEEEEC-CCCSHHHHHHHHHHSCSEEEEEECT
T ss_pred -----------------------c------CHHHHHHHHHHHHHcCCCEEEEc-CCCCHHHHHHHHHhcCCCEEEEecc
Confidence 0 13688999988888999999985 7888999999999999999885443
No 54
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=84.85 E-value=6.3 Score=37.91 Aligned_cols=107 Identities=15% Similarity=0.245 Sum_probs=69.7
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+ .++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 24 ~~dg~iD~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-grvpViaGv----------- 87 (303)
T 2wkj_A 24 DQQQALDKA-SLRRLVQ---FNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK-GKIKLIAHV----------- 87 (303)
T ss_dssp CTTSSBCHH-HHHHHHH---HHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEEC-----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEec-----------
Confidence 356888744 3444433 456789999877653 2347777777777654 367776531
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCC-CCeEEEE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYP-LPIAAYQ 377 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~-lPvaaYq 377 (432)
| -.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.++ +||..|+
T Consensus 88 ----------g------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 88 ----------G------------CVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp ----------C------------CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ----------C------------CCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 1 125678877776656679999998654322 344456667778 9999999
Q ss_pred e
Q 014017 378 V 378 (432)
Q Consensus 378 V 378 (432)
+
T Consensus 146 ~ 146 (303)
T 2wkj_A 146 I 146 (303)
T ss_dssp C
T ss_pred C
Confidence 7
No 55
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=84.81 E-value=6.7 Score=37.41 Aligned_cols=106 Identities=16% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCCccccHHHHHHHHHHHHHHHH-cCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQAR-AGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~-AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
+||.||-+ .++.|++ -+.+ +|+|-|.+.+. .+=|...+|.+.+..+ .+++|+.-..
T Consensus 17 ~dg~iD~~-~l~~lv~---~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 81 (293)
T 1f6k_A 17 EDGTINEK-GLRQIIR---HNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG---------- 81 (293)
T ss_dssp TTSCBCHH-HHHHHHH---HHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECC----------
T ss_pred CCCCcCHH-HHHHHHH---HHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEecC----------
Confidence 46788744 3444443 4556 89998876543 2346777777776654 3677764421
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++
T Consensus 82 -----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 82 -----------------------SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp -----------------------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred -----------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 225678877776656679999998654322 34445666778999999996
No 56
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=84.45 E-value=4.7 Score=38.77 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=37.4
Q ss_pred hHHHHHHHhh-CCCCeEE--EE----echhhHHHHHHHHCCCch-----h--hHHHHHHHHHHHHcCccEe
Q 014017 359 LDVIRLLRDK-YPLPIAA--YQ----VSGEYSMIKAGGALKMID-----E--QRVMMESLMCLRRAGADII 415 (432)
Q Consensus 359 LDII~~vk~~-~~lPvaa--Yq----VSGEYaMikaAa~~G~id-----~--~~~~~EsL~~ikRAGAd~I 415 (432)
+|+++++|++ .++|+.. |- --|.-..++.++++|.=- . ++ .-|....+++.|-+.|
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee-~~~~~~~~~~~gl~~I 154 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNE-SQPFVAAAEKFGIQPI 154 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGG-CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHHcCCeEE
Confidence 7899999988 6899976 32 136556677777777411 1 22 4566667788887765
No 57
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=83.92 E-value=14 Score=39.01 Aligned_cols=257 Identities=13% Similarity=0.080 Sum_probs=153.6
Q ss_pred EEEeeCCCCcc--cCCCCCcee-echh-hhHHHHHHH-HHHcCCCeEEE--eecCCCCCCCcccCcCcCCCCCHHHHHHH
Q 014017 133 LFIHEGEEDTP--IGAMPGCYR-LGWR-HGLVQEVAK-ARDVGVNSVVL--FPKVPDALKSPTGDEAYNDNGLVPRTIWL 205 (432)
Q Consensus 133 lFV~eg~~~~~--I~sMPGv~r-~si~-~~l~~~v~~-~~~~GI~sv~L--Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~ 205 (432)
++|.||--.+. -..+++..- |+++ .++++.+.+ -++.|-.-+.- |+.-+...+ ..|-+ ..-.-+..+|+++
T Consensus 15 ililDGamGT~L~~~g~~~~~el~~l~~Pe~V~~iH~~Yl~AGAdii~TnTf~a~~~~l~-~~g~~-~~~~el~~~av~l 92 (566)
T 1q7z_A 15 VLLLDGAYGTEFMKYGYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLR-KHGLE-DKLDPIVRNAVRI 92 (566)
T ss_dssp CEECCCCSHHHHHHTTCCSCGGGHHHHCHHHHHHHHHHHHHHTCSEEECSCTTCSHHHHG-GGTCG-GGHHHHHHHHHHH
T ss_pred eEEEEChHHHHHHHCCCCCCchhhcccCHHHHHHHHHHHHHhhcceeecCcccCCHHHHH-hcCch-HHHHHHHHHHHHH
Confidence 67778752111 123455432 2332 235666654 57899873333 554222111 12211 1112366789999
Q ss_pred HHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCC
Q 014017 206 LKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEG 284 (432)
Q Consensus 206 iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~G 284 (432)
.|+.-.+=+|..+ +.||... +...|.+.-|+-.+...+|+-.++++|+|+++---|.| -...++.+++.+.
T Consensus 93 Ar~a~~~~~VAGs--iGP~g~~-----~~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~~~~~Ea~aa~~a~~~~- 164 (566)
T 1q7z_A 93 ARRAAGEKLVFGD--IGPTGEL-----PYPLGSTLFEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREV- 164 (566)
T ss_dssp HHHHHTTSEEEEE--ECCCSCC-----BTTTSSBCHHHHHHHHHHHHHHHHHTTCSEEEEEEECCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCeEEEe--CCCcccC-----CCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHh-
Confidence 9876532155544 5577653 22345677788889999999999999999999998888 5577777777764
Q ss_pred Ccccee-ecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC---chhH
Q 014017 285 FQHVSI-MSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL---PYLD 360 (432)
Q Consensus 285 f~~v~I-mSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal---~YLD 360 (432)
|.++++ +|++.+ .+ ..-++ =....+++..+.. .|+|.|.+-=+. ....
T Consensus 165 ~~~~Pv~vS~t~~-~~--------------------g~~~~----G~~~~~~~~~l~~---~~~~avG~NC~~gp~~~~~ 216 (566)
T 1q7z_A 165 SRDVFLIAHMTFD-EK--------------------GRSLT----GTDPANFAITFDE---LDIDALGINCSLGPEEILP 216 (566)
T ss_dssp CSSSCEEEEECCC-TT--------------------SCCTT----SCCHHHHHHHHHT---SSCSEEEEESSSCHHHHHH
T ss_pred CCCCcEEEEEEEc-CC--------------------CeeCC----CCcHHHHHHHhhc---cCCCEEEEeCCCCHHHHHH
Confidence 334544 344322 11 11222 2344677766643 589999997653 2377
Q ss_pred HHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee-----h-hcHHHHHHHHhc
Q 014017 361 VIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL-----T-YFALQAARCLCG 429 (432)
Q Consensus 361 II~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii-----T-YfA~~~a~wL~~ 429 (432)
+|+.++...+.|+.+|==+|+-... . ....|-...+-+-+.+..+..+|+.+|= | .+-..+++++.+
T Consensus 217 ~l~~l~~~~~~p~~vyPNaG~p~~~-~-~~~~~~~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~aia~~~~~ 289 (566)
T 1q7z_A 217 IFQELSQYTDKFLVVEPNAGKPIVE-N-GKTVYPLKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGN 289 (566)
T ss_dssp HHHHHHHTCCSEEEEECCSSSCEEE-T-TEEECCCCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHCS
T ss_pred HHHHHHhcCCCEEEEEcCCCCCccc-C-CccccCCCHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHHhcC
Confidence 8888888889999999888865210 1 1112322234577888889999998873 1 234556666653
No 58
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=83.90 E-value=25 Score=31.95 Aligned_cols=170 Identities=25% Similarity=0.260 Sum_probs=89.9
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCC
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDG 228 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshG 228 (432)
|.+..+. +..+.++.+.+.|+..+.+-.. ..+ | ...|.....++.|++.+ ++-|+.
T Consensus 24 g~~~~~~--~~~~~a~~~~~~Ga~~i~v~d~----~~~--~----~~~g~~~~~i~~i~~~~-~iPvi~----------- 79 (266)
T 2w6r_A 24 GKKNTGI--LLRDWVVEVEKRGAGEILLTSI----DRD--G----TKSGYDTEMIRFVRPLT-TLPIIA----------- 79 (266)
T ss_dssp TTEEEEE--EHHHHHHHHHHHTCSEEEEEET----TTS--S----CSSCCCHHHHHHHGGGC-CSCEEE-----------
T ss_pred CeeccCC--CHHHHHHHHHHCCCCEEEEEec----Ccc--c----CCCcccHHHHHHHHHhc-CCCEEE-----------
Confidence 4444543 4788999999999999998442 112 1 12344567888888765 333332
Q ss_pred cceeecCCCccccHHHHHHHHHHHHHHHHcCCCee-cCCCCCCc--hHHHHHHHHHHCC--Cccceeecchhhhccccch
Q 014017 229 HDGIVREDGVIMNDETVHQLCKQAVSQARAGADVV-SPSDMMDG--RVGAIRAALDAEG--FQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 229 HcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV-APSDMMDG--rV~aIR~aLD~~G--f~~v~ImSYSaKyASsfYG 303 (432)
. |.|.+-+.++ .+ .++|||.| .++..+++ ....+++.++..| .. -.+++-+.|... |
T Consensus 80 ------~-ggi~~~~~i~----~~---~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~d~~~~~---g 141 (266)
T 2w6r_A 80 ------S-GGAGKMEHFL----EA---FLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQ-AVVVAIDAKRVD---G 141 (266)
T ss_dssp ------E-SCCCSTHHHH----HH---HHHTCSEEECCCCC------CHHHHHHCC----CCC-EEEEEEEEEEET---T
T ss_pred ------E-CCCCCHHHHH----HH---HHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCC-EEEEEEEEEecC---C
Confidence 1 2222222222 22 24799965 45666656 6778888887776 32 233454443110 0
Q ss_pred hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCC----chhHHHHHHHhhCCCCeEE
Q 014017 304 PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGL----PYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 304 PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal----~YLDII~~vk~~~~lPvaa 375 (432)
-++ +.. .|-++.... +..|.+++++ +-|++.|.+ +... +-++.++++++..++|+.+
T Consensus 142 ~~~--v~~---~g~~~~~~~-------~~~e~~~~~~---~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia 205 (266)
T 2w6r_A 142 EFM--VFT---HSGKKNTGI-------LLRDWVVEVE---KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 205 (266)
T ss_dssp EEE--EEE---TTTTEEEEE-------EHHHHHHHHH---HTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEE
T ss_pred CEE--EEE---CCCceecch-------hHHHHHHHHH---HcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEE
Confidence 000 000 011111112 3355445543 479999987 3222 3489999999999999986
No 59
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=83.87 E-value=6.7 Score=40.74 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=25.6
Q ss_pred hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 359 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 359 LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+++|+.+|+.+++||..=.| .+ .|-...+..+|||.|+.
T Consensus 332 ~~~i~~lr~~~~~PvivKgv---------------~~-----~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGV---------------QR-----TEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEE---------------CS-----HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeC---------------CC-----HHHHHHHHHcCCCEEEE
Confidence 56788888888888876433 22 23344566778887765
No 60
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=83.70 E-value=8.2 Score=29.85 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|+|++= |++.=+++++.+|+..++|+....-.++......+.+.|..|
T Consensus 32 ~~~~~~al~~~~---~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~~~ga~~ 98 (120)
T 3f6p_A 32 AHDGNEAVEMVE---ELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADD 98 (120)
T ss_dssp ESSHHHHHHHHH---TTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHHHTTCCE
T ss_pred eCCHHHHHHHHh---hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHHhCCcce
Confidence 457788887664 3568999987 555568899999988899999987766666665566666543
No 61
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=83.69 E-value=11 Score=36.71 Aligned_cols=165 Identities=18% Similarity=0.206 Sum_probs=102.1
Q ss_pred CCC-ceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCC
Q 014017 147 MPG-CYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYS 225 (432)
Q Consensus 147 MPG-v~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YT 225 (432)
||- =| -+.. ++++.+.++.+.|...|.|=|- -.....|+.|.+.- +=++.-+-|-|-+
T Consensus 97 ~pfgsY-~s~~-~a~~~a~rl~kaGa~aVklEdg-----------------~~~~~~i~~l~~~G--Ipv~gHlgltPq~ 155 (275)
T 3vav_A 97 LPFGTY-GTPA-DAFASAVKLMRAGAQMVKFEGG-----------------EWLAETVRFLVERA--VPVCAHVGLTPQS 155 (275)
T ss_dssp CCTTSC-SSHH-HHHHHHHHHHHTTCSEEEEECC-----------------GGGHHHHHHHHHTT--CCEEEEEESCGGG
T ss_pred cCCCCC-CCHH-HHHHHHHHHHHcCCCEEEECCc-----------------hhHHHHHHHHHHCC--CCEEEecCCCceE
Confidence 663 35 5654 5788888888888888777331 02356777777652 3333333343433
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecc-hhhhccccchh
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY-TAKYASSFYGP 304 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY-SaKyASsfYGP 304 (432)
.+--.|..- -| ..|+..+.+.+.|..+++||||+|-+-.+-+--...|.++| +++++.- +..+++.=.=-
T Consensus 156 ~~~~gg~~v-qg--rt~~~a~~~i~rA~a~~eAGA~~ivlE~vp~~~a~~It~~l------~iP~igIGaG~~cdgQvLv 226 (275)
T 3vav_A 156 VHAFGGFKV-QG--KTEAGAAQLLRDARAVEEAGAQLIVLEAVPTLVAAEVTREL------SIPTIGIGAGAECSGQVLV 226 (275)
T ss_dssp HHHHC---C-CC--CSHHHHHHHHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHC------SSCEEEESSCSCSSEEEEC
T ss_pred EeccCCeEE-Ec--CCHHHHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHhC------CCCEEEEccCCCCCceeee
Confidence 221112221 13 35777899999999999999999988887765566666665 3555544 34566655555
Q ss_pred hhhhhhC----CCCCCCcccccccccCCCCCHHHHHHHHHhchhcCC
Q 014017 305 FREALDS----NPRFGDKKTYVIRVIELYANYREALVEAQADESEGA 347 (432)
Q Consensus 305 FRdAa~S----ap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA 347 (432)
+-|.++- .|+|- |.|--- -....+|+++-..|+.+|.
T Consensus 227 ~~D~lG~~~~~~pkf~--k~y~~~----~~~~~~a~~~y~~~V~~~~ 267 (275)
T 3vav_A 227 LHDMLGVFPGKRPRFV--KDFMQG----QPSIFAAVEAYVRAVKDGS 267 (275)
T ss_dssp HHHHTTCSCSCCCTTC--CCCCTT----CSSHHHHHHHHHHHHHHTC
T ss_pred HhhhcCCCCCCCCCcc--hhhhhh----HHHHHHHHHHHHHHHhcCC
Confidence 6677764 35553 455222 4556899999999998875
No 62
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=83.23 E-value=0.77 Score=42.96 Aligned_cols=129 Identities=23% Similarity=0.281 Sum_probs=73.7
Q ss_pred HHcCCCeecCCCCCCch-----------HHHHHHHHHHCCCccceeecchhhhccccchhhhhh-h-------hC-CC--
Q 014017 256 ARAGADVVSPSDMMDGR-----------VGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREA-L-------DS-NP-- 313 (432)
Q Consensus 256 A~AGADiVAPSDMMDGr-----------V~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdA-a-------~S-ap-- 313 (432)
+++|||++= =|.|||. |.+||+.- .-.-++=+|-+-. ..|-..|.+| + ++ .+
T Consensus 22 ~~~gad~lH-vDvmDG~fvpn~t~G~~~v~~lr~~~--~~~~dvhLmv~dp---~~~i~~~~~aGAd~itvh~Ea~~~~~ 95 (231)
T 3ctl_A 22 IDSHADYFH-IDIMDGHFVPNLTLSPFFVSQVKKLA--TKPLDCHLMVTRP---QDYIAQLARAGADFITLHPETINGQA 95 (231)
T ss_dssp HHTTCSCEE-EEEECSSSSSCCCBCHHHHHHHHTTC--CSCEEEEEESSCG---GGTHHHHHHHTCSEEEECGGGCTTTH
T ss_pred HHcCCCEEE-EEEEeCccCccchhcHHHHHHHHhcc--CCcEEEEEEecCH---HHHHHHHHHcCCCEEEECcccCCccH
Confidence 389999862 4789997 67777653 1234677776532 1222333332 0 00 00
Q ss_pred --------CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEE---EcCC---Cch----hHHHHHHHhhC-----C
Q 014017 314 --------RFGDKKTYVIRVIELYANYREALVEAQADESEGADILL---VKPG---LPY----LDVIRLLRDKY-----P 370 (432)
Q Consensus 314 --------~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lM---VKPa---l~Y----LDII~~vk~~~-----~ 370 (432)
..|=+-.--++ |...-|.+. .+.+++|+|+ |-|+ ..| +|-|+++|+.. +
T Consensus 96 ~~~i~~i~~~G~k~gv~ln----p~tp~~~~~----~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~ 167 (231)
T 3ctl_A 96 FRLIDEIRRHDMKVGLILN----PETPVEAMK----YYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLE 167 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEC----TTCCGGGGT----TTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCeEEEEEE----CCCcHHHHH----HHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCC
Confidence 11222222245 665544443 4456899998 8884 233 78888888754 4
Q ss_pred CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 371 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 371 lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+||. | .|-++.+ ....+..||||+++.-
T Consensus 168 ~~I~---V------------dGGI~~~-----~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 168 YEIE---V------------DGSCNQA-----TYEKLMAAGADVFIVG 195 (231)
T ss_dssp CEEE---E------------ESCCSTT-----THHHHHHHTCCEEEEC
T ss_pred ceEE---E------------ECCcCHH-----HHHHHHHcCCCEEEEc
Confidence 6653 3 5667754 4456788999988754
No 63
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=83.14 E-value=15 Score=33.00 Aligned_cols=67 Identities=18% Similarity=0.323 Sum_probs=47.2
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCC-CCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYND-NGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~-~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
-.+.++.+.+.|...|.|-.. ..+ ++ +..+.+.++.+|+.+|++.|+.++.
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~---~~~--------~~~~~~~~~~i~~i~~~~~~~~v~~~~~----------------- 141 (234)
T 1yxy_A 90 TMTEVDQLAALNIAVIAMDCT---KRD--------RHDGLDIASFIRQVKEKYPNQLLMADIS----------------- 141 (234)
T ss_dssp SHHHHHHHHTTTCSEEEEECC---SSC--------CTTCCCHHHHHHHHHHHCTTCEEEEECS-----------------
T ss_pred hHHHHHHHHHcCCCEEEEccc---ccC--------CCCCccHHHHHHHHHHhCCCCeEEEeCC-----------------
Confidence 367789999999998766432 121 22 2367889999999999988886542
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCee
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVV 263 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiV 263 (432)
|+ +.+....++|||+|
T Consensus 142 ------t~----~ea~~a~~~Gad~i 157 (234)
T 1yxy_A 142 ------TF----DEGLVAHQAGIDFV 157 (234)
T ss_dssp ------SH----HHHHHHHHTTCSEE
T ss_pred ------CH----HHHHHHHHcCCCEE
Confidence 11 12566678999999
No 64
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=82.96 E-value=3.3 Score=40.36 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=87.0
Q ss_pred HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc--ccccccccCCC
Q 014017 252 AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK--KTYVIRVIELY 329 (432)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p 329 (432)
|....+||.|+|.-.|.. + .-..|+.|+..++..-=-. .=.--+.++..+|-..|= -+| -
T Consensus 42 A~l~e~aG~d~ilvGdSl----~-----~~~lG~~dt~~vtldem~~--h~~aV~r~~~~~~vvaD~pfgsY-~------ 103 (275)
T 3vav_A 42 AALLDRANVDVQLIGDSL----G-----NVLQGQTTTLPVTLDDIAY--HTACVARAQPRALIVADLPFGTY-G------ 103 (275)
T ss_dssp HHHHHHTTCSEEEECTTH----H-----HHTTCCSSSTTCCHHHHHH--HHHHHHHTCCSSEEEEECCTTSC-S------
T ss_pred HHHHHHcCCCEEEECcHH----H-----HHHcCCCCCCccCHHHHHH--HHHHHHhcCCCCCEEEecCCCCC-C------
Confidence 444567899999766543 2 2356887776655422100 001122334334433332 145 3
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEec---------hhhHHHHHHHHCCCchh-hHH
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVS---------GEYSMIKAGGALKMIDE-QRV 399 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVS---------GEYaMikaAa~~G~id~-~~~ 399 (432)
|..++++.+.+=+++||+.|-..=+..-.|.|+.+.+ -.+|+++ |+- |-|-. .|=-|+ -+-
T Consensus 104 -s~~~a~~~a~rl~kaGa~aVklEdg~~~~~~i~~l~~-~GIpv~g-HlgltPq~~~~~gg~~v------qgrt~~~a~~ 174 (275)
T 3vav_A 104 -TPADAFASAVKLMRAGAQMVKFEGGEWLAETVRFLVE-RAVPVCA-HVGLTPQSVHAFGGFKV------QGKTEAGAAQ 174 (275)
T ss_dssp -SHHHHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHH-TTCCEEE-EEESCGGGHHHHC---C------CCCSHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCCEEEECCchhHHHHHHHHHH-CCCCEEE-ecCCCceEEeccCCeEE------EcCCHHHHHH
Confidence 5588888887778899999999998888999999987 5899987 442 33321 121121 256
Q ss_pred HHHHHHHHHHcCccEeeh
Q 014017 400 MMESLMCLRRAGADIILT 417 (432)
Q Consensus 400 ~~EsL~~ikRAGAd~IiT 417 (432)
++|-..++..||||.|+-
T Consensus 175 ~i~rA~a~~eAGA~~ivl 192 (275)
T 3vav_A 175 LLRDARAVEEAGAQLIVL 192 (275)
T ss_dssp HHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 788889999999999874
No 65
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=82.71 E-value=3.3 Score=43.62 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCC-CCchHHHHHHHHHHCCCccce------eecchhhhccccchhhhhh---hhCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDM-MDGRVGAIRAALDAEGFQHVS------IMSYTAKYASSFYGPFREA---LDSN 312 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDM-MDGrV~aIR~aLD~~Gf~~v~------ImSYSaKyASsfYGPFRdA---a~Sa 312 (432)
.|-+.+++.+..+.++|+.+|.=..= ---.|.+|+++|+..--.... +.|+. -.-.+.||+-. ++-+
T Consensus 249 ~~p~~~a~~~~~~~~~G~~iiGGCCGTtP~hI~aia~~~~~~~p~~~~~~~~~~~~s~~---~~~~~~~~~iiGer~N~T 325 (566)
T 1q7z_A 249 LKPHDFAVHIDSYYELGVNIFGGCCGTTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSPS---KLVTFDHFVVIGERINPA 325 (566)
T ss_dssp CCHHHHHTTHHHHHHTTCSEECCCTTCCHHHHHHHHHHHCSCCCCCCCCCCCCEEECSS---CEEESSSCEEEEEEECCT
T ss_pred CCHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHHhcCCCCCCcccCccceecCCc---eeeccccceEEEEEecCC
Confidence 34567899999999999999974332 225799999999644321111 12221 11122455422 2222
Q ss_pred -CC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchh-------HHHHHHHhhCCCCeEEEEechhhH
Q 014017 313 -PR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYL-------DVIRLLRDKYPLPIAAYQVSGEYS 383 (432)
Q Consensus 313 -p~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YL-------DII~~vk~~~~lPvaaYqVSGEYa 383 (432)
|. |.|- +- ..+.++|+..+..-+++|||||=|=|+.... -++..+++.+++|+..= |=...
T Consensus 326 g~dsf~~~----~~----~~~~~~a~~~A~~~v~~GAdiIDIgpg~~~v~~~ee~~rvv~~i~~~~~vpisID--T~~~~ 395 (566)
T 1q7z_A 326 GRKKLWAE----MQ----KGNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVSNVPLSLD--IQNVD 395 (566)
T ss_dssp TCHHHHHH----HH----TTCCHHHHHHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHHHHHTCSCEEEE--CCCHH
T ss_pred CChhHHHH----hh----cCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhCCceEEEe--CCCHH
Confidence 11 2111 11 2355899999999999999999999997653 35556667789999764 33566
Q ss_pred HHHHHHHC--C--Cchh---h-HHHHHHHHHHHHcCccEeehhcH
Q 014017 384 MIKAGGAL--K--MIDE---Q-RVMMESLMCLRRAGADIILTYFA 420 (432)
Q Consensus 384 MikaAa~~--G--~id~---~-~~~~EsL~~ikRAGAd~IiTYfA 420 (432)
.+++|.+. | +||. + .-+-|.+.-.++.|+-+|+..+-
T Consensus 396 v~eaal~~~~G~~iINdis~~~~~~~~~~~~~~~~g~~vV~m~~~ 440 (566)
T 1q7z_A 396 LTERALRAYPGRSLFNSAKVDEEELEMKINLLKKYGGTLIVLLMG 440 (566)
T ss_dssp HHHHHHHHCSSCCEEEEEESCHHHHHHHHHHHHHHCCEEEEESCS
T ss_pred HHHHHHHhcCCCCEEEECCcchhhHHHHHHHHHHhCCeEEEEeCC
Confidence 77777776 4 3332 1 22234455668889999986653
No 66
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=82.60 E-value=4 Score=39.91 Aligned_cols=141 Identities=17% Similarity=0.133 Sum_probs=81.5
Q ss_pred HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc--ccccccccCCC
Q 014017 252 AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK--KTYVIRVIELY 329 (432)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p 329 (432)
|....+||.|+|.-.|.+ +. -..|+.|+..++..-=-.- =.--+.++..++-..|= -+||.+ |
T Consensus 47 A~l~e~aG~d~ilvGdSl----~~-----~~lG~~dt~~vTldemi~h--~~aV~r~~~~~~vvaD~pfgsy~~s----~ 111 (281)
T 1oy0_A 47 ARIFDEAGIPVLLVGDSA----AN-----VVYGYDTTVPISIDELIPL--VRGVVRGAPHALVVADLPFGSYEAG----P 111 (281)
T ss_dssp HHHHHTTTCCEEEECTTH----HH-----HTTCCSSSSSCCGGGTHHH--HHHHHHHCTTSEEEEECCTTSSTTC----H
T ss_pred HHHHHHcCCCEEEECHHH----HH-----HHcCCCCCCCCCHHHHHHH--HHHHHhcCCCCeEEEECCCCcccCC----H
Confidence 444557899999754432 22 2467777766655321000 00112223222221121 167765 4
Q ss_pred CCHHHHHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCeEE--------EEechhhHHHHHHHHCCCchhhHHH
Q 014017 330 ANYREALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPIAA--------YQVSGEYSMIKAGGALKMIDEQRVM 400 (432)
Q Consensus 330 ~N~~EAlre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPvaa--------YqVSGEYaMikaAa~~G~id~~~~~ 400 (432)
.++++.+.+=++ -||+.|-..=+.-..|.|+.+.+. .+||.+ -+.-|-|-.+-. -|.-+-+
T Consensus 112 ---~~a~~na~rl~~eaGa~aVklEdg~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~gr------t~~a~~~ 181 (281)
T 1oy0_A 112 ---TAALAAATRFLKDGGAHAVKLEGGERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGR------GDAAEQT 181 (281)
T ss_dssp ---HHHHHHHHHHHHTTCCSEEEEEBSGGGHHHHHHHHHH-TCCEEEEEECCC--------------------CHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCeEEEECCcHHHHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEEeC------cHHHHHH
Confidence 888887777776 799999999887889999999875 688872 122244533210 0111456
Q ss_pred HHHHHHHHHcCccEeeh
Q 014017 401 MESLMCLRRAGADIILT 417 (432)
Q Consensus 401 ~EsL~~ikRAGAd~IiT 417 (432)
+|-..++..||||.|+-
T Consensus 182 i~rA~a~~eAGA~~ivl 198 (281)
T 1oy0_A 182 IADAIAVAEAGAFAVVM 198 (281)
T ss_dssp HHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCcEEEE
Confidence 88888999999999964
No 67
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=82.45 E-value=6.7 Score=37.33 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=22.2
Q ss_pred HHHCCCchh----hHHHHHHHHHHHHcCccEee
Q 014017 388 GGALKMIDE----QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 388 Aa~~G~id~----~~~~~EsL~~ikRAGAd~Ii 416 (432)
..++|+++. ++.+.|.+..++..|+|.||
T Consensus 169 ~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IV 201 (286)
T 2jfq_A 169 LVEQMRYSDPTITSIVIHQTLKRWRNSESDTVI 201 (286)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEE
T ss_pred HHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEE
Confidence 346788863 45678888888888999988
No 68
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=82.34 E-value=15 Score=34.62 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=23.2
Q ss_pred HHHCCCchh---hHHHHHHHHHHHHcCccEee
Q 014017 388 GGALKMIDE---QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 388 Aa~~G~id~---~~~~~EsL~~ikRAGAd~Ii 416 (432)
..++|+++. ++.+.|.+..++..|+|.||
T Consensus 151 ~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iV 182 (272)
T 1zuw_A 151 FVESGKFLDQTADEIVKTSLYPLKDTSIDSLI 182 (272)
T ss_dssp HHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 456888863 46788888999999999987
No 69
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=82.12 E-value=4.4 Score=39.73 Aligned_cols=156 Identities=24% Similarity=0.269 Sum_probs=97.4
Q ss_pred HHcCCCeEEEee-cCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccc
Q 014017 167 RDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIM 240 (432)
Q Consensus 167 ~~~GI~sv~LFg-vi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~Id 240 (432)
-+.|++.+.+=| -+.. .+..+.+.+++ ...++.|.+.. ++-|++|.=. |.-
T Consensus 39 e~aGf~ai~vs~~s~a~------~~~G~pD~~~vt~~em~~~~~~I~r~~-~~PviaD~d~---------------Gyg- 95 (298)
T 3eoo_A 39 EAVGFKAVYLSGGGVAA------NSLGIPDLGISTMDDVLVDANRITNAT-NLPLLVDIDT---------------GWG- 95 (298)
T ss_dssp HHHTCSCEEECHHHHHH------HTTCCCSSSCCCHHHHHHHHHHHHHHC-CSCEEEECTT---------------CSS-
T ss_pred HHcCCCEEEECcHHHHH------HhcCCCCCCCCCHHHHHHHHHHHHhhc-CCeEEEECCC---------------CCC-
Confidence 356999988833 1110 01123333443 34556665554 4557777532 221
Q ss_pred cHHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc--------hHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 241 NDETVHQLCKQAVSQARAGADVVSPSDMM--------DG--------RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 241 ND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DG--------rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
|.+ ...+.+-.+.++||+.|--.|-. .| .|..||.+.+...=.+.-|++-+--|+.
T Consensus 96 ~~~---~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~----- 167 (298)
T 3eoo_A 96 GAF---NIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAA----- 167 (298)
T ss_dssp SHH---HHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHH-----
T ss_pred CHH---HHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhh-----
Confidence 222 33344556678999988776643 22 1556666665553246777776554421
Q ss_pred hhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEec
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVS 379 (432)
. ..+|||+.+..=.+-|||+|++ |+..-.|-|+++.+.+++|+.+--+.
T Consensus 168 -------------------~------gldeai~Ra~ay~~AGAD~if~-~~~~~~ee~~~~~~~~~~Pl~~n~~~ 216 (298)
T 3eoo_A 168 -------------------E------GIDAAIERAIAYVEAGADMIFP-EAMKTLDDYRRFKEAVKVPILANLTE 216 (298)
T ss_dssp -------------------H------HHHHHHHHHHHHHHTTCSEEEE-CCCCSHHHHHHHHHHHCSCBEEECCT
T ss_pred -------------------c------CHHHHHHHHHhhHhcCCCEEEe-CCCCCHHHHHHHHHHcCCCeEEEecc
Confidence 1 1369999999888999999999 78888999999999999999775443
No 70
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=81.52 E-value=9.1 Score=37.59 Aligned_cols=102 Identities=16% Similarity=0.182 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~---A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~ 234 (432)
.+.+.++.+.+.|+..|.|=+-+.+ +| +|.- ..-+-.-...-|+++++.-++++|++=.-- +
T Consensus 105 ~v~~~v~~l~~aGaagv~iED~~~~-kr--cGh~~gk~l~~~~e~~~rI~Aa~~A~~~~~I~ARtda--~---------- 169 (305)
T 3ih1_A 105 NVARTAVEMVEAKVAAVQIEDQQLP-KK--CGHLNGKKLVTTEELVQKIKAIKEVAPSLYIVARTDA--R---------- 169 (305)
T ss_dssp HHHHHHHHHHHTTCSEEEEECBCSS-CC--TTCTTCCCBCCHHHHHHHHHHHHHHCTTSEEEEEECC--H----------
T ss_pred HHHHHHHHHHHhCCcEEEECCCCCC-cc--cCCCCCCcccCHHHHHHHHHHHHHcCCCeEEEEeecc--c----------
Confidence 5788899999999999999554322 11 1211 111111234567777777677777632210 0
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aL 280 (432)
....++.+.+-|..|++||||+|-+-..-+ -.+.+|.+++
T Consensus 170 ------~~~g~~~ai~Ra~ay~eAGAD~i~~e~~~~~~~~~~i~~~~ 210 (305)
T 3ih1_A 170 ------GVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKV 210 (305)
T ss_dssp ------HHHCHHHHHHHHHHHHHHTCSEEEETTCCSHHHHHHHHHHS
T ss_pred ------cccCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHc
Confidence 012377788889999999999999887766 5566666665
No 71
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=81.04 E-value=2.2 Score=38.45 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=29.0
Q ss_pred HHHHHHHhchh-c--CCcEEEEc-CCCchhHHHHHHHhhCCCCeE
Q 014017 334 EALVEAQADES-E--GADILLVK-PGLPYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 334 EAlre~~~Di~-E--GAD~lMVK-Pal~YLDII~~vk~~~~lPva 374 (432)
+.+.++..... . |||.|+.= =.++.++++..+.+.+++||.
T Consensus 156 ~~~~~~~~~l~~~~~gadaIvLgCT~l~~~~~~~~l~~~~g~PVi 200 (223)
T 2dgd_A 156 FTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDMPVV 200 (223)
T ss_dssp HHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEE
T ss_pred HHHHHHHHHHhcccCCCCEEEEeCCcccHHHHHHHHHHHhCCCEE
Confidence 44555554443 4 99998875 355667899999888899975
No 72
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=80.89 E-value=1.5 Score=43.44 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=39.8
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC-------------------------C--------------c
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG-------------------------L--------------P 357 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa-------------------------l--------------~ 357 (432)
+++.|..+++.=.+|..||+|. ++||||||-.|=. + +
T Consensus 110 ~k~~f~vpfv~~~~~l~EAlrr----i~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~a 185 (291)
T 3o07_A 110 EKDKFKVPFVCGAKDLGEALRR----INEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRV 185 (291)
T ss_dssp CGGGCSSCEEEEESSHHHHHHH----HHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTS
T ss_pred hhhcCCCcEEeeCCCHHHHHHH----HHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCC
Confidence 4545555543337899999987 4599999999811 2 2
Q ss_pred hhHHHHHHHhhCCCCeEE
Q 014017 358 YLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaa 375 (432)
=.|+|+++++..++||.+
T Consensus 186 d~elI~~Ike~~~IPVV~ 203 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVN 203 (291)
T ss_dssp CHHHHHHHHHHTSCSSCE
T ss_pred CHHHHHHHHHccCCCEEE
Confidence 268899999988899864
No 73
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=80.73 E-value=20 Score=33.53 Aligned_cols=29 Identities=17% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHCCCchh---hHHHHHHHHHHHHcCccEee
Q 014017 388 GGALKMIDE---QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 388 Aa~~G~id~---~~~~~EsL~~ikRAGAd~Ii 416 (432)
..+.|+++. ++.+.|.+..+++.|+|.||
T Consensus 150 ~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iV 181 (267)
T 2gzm_A 150 LVESGNFESEMAYEVVRETLQPLKNTDIDTLI 181 (267)
T ss_dssp HHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 356788863 46778888899999999988
No 74
>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}
Probab=79.97 E-value=11 Score=37.39 Aligned_cols=120 Identities=12% Similarity=-0.000 Sum_probs=72.6
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPY 224 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc~Y 224 (432)
||.=|- +.. ++.+.++++.+.|+..|.|=+.+....-.-.|....-+-.-...-|+++++.. ++..|++=.- .+
T Consensus 108 ~d~Gyg-~~~-~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtd--a~ 183 (318)
T 1zlp_A 108 GDTGGG-GPL-NVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTD--AR 183 (318)
T ss_dssp CTTCSS-SHH-HHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEEC--TH
T ss_pred CCCCCC-CHH-HHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeH--Hh
Confidence 443355 553 58999999999999999994432110000011111222223345566676664 5555553211 11
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHHHCCCccceeec
Q 014017 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 225 TshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD~~Gf~~v~ImS 292 (432)
-..-++.+.+-|..+++||||+|-+-.+-| -.+..|.++|+ +++|.
T Consensus 184 ----------------a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~l~------~P~la 230 (318)
T 1zlp_A 184 ----------------APHGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTK------GLRIA 230 (318)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHSC------SEEEE
T ss_pred ----------------hhcCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHhcC------CCEEE
Confidence 023477888899999999999998888776 66777777763 67654
No 75
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=79.19 E-value=11 Score=36.74 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
+..+.++.+.+.|...|-|.+-= | +.-.|+.|..--|.--++...++.+|+.++ |..|...+..+.|.
T Consensus 153 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~ 232 (349)
T 3hgj_A 153 AFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG 232 (349)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 35556667889999999996531 2 233566665433333356778999999986 77788777776663
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
. +| .+-++ ..+.|-.+.++|+|.|.-|.
T Consensus 233 ~---------~g-~~~~~----~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 233 E---------GG-WSLED----TLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp T---------TS-CCHHH----HHHHHHHHHHTTCCEEEEEC
T ss_pred C---------CC-CCHHH----HHHHHHHHHHcCCCEEEEec
Confidence 2 12 22233 34455667789999998763
No 76
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482}
Probab=79.19 E-value=11 Score=35.89 Aligned_cols=140 Identities=16% Similarity=0.051 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHCCCcc-ceeecchhhhccccchhhhhhhhCCCCCCCccccc-ccccCC-CCCHHHHHHHHHhchhcCC
Q 014017 271 GRVGAIRAALDAEGFQH-VSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYV-IRVIEL-YANYREALVEAQADESEGA 347 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf~~-v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQ-md~~~~-p~N~~EAlre~~~Di~EGA 347 (432)
.-+..+-+.|.+.|..+ |.|-|+ .+-+..-.-.|.. +..|. |+++.+ ..+..+.+.+....+. .
T Consensus 127 ~~~~~v~~~l~~~~~~~~v~i~s~---------~~l~~~~~~~p~~--~~~~l~~p~i~~~~~~~~~~i~~~~~~~~--p 193 (278)
T 3i10_A 127 DIFDDVYAILEKTETQNQVIMKGG---------QPIETVKREFGSY--LDKVLYMPVIDLGNKEAEKIITDYLKELR--P 193 (278)
T ss_dssp GGHHHHHHHHHHHTCGGGEEEEES---------SCHHHHHHHHGGG--TTTSEEEEEEETTSTTHHHHHHHHHHHTC--C
T ss_pred hHHHHHHHHHHHcCCCCeEEEEEh---------HHHHHHHHHCcCC--ccceEEEeeecccccchHHHHHHHHHhcC--c
Confidence 45778888898999855 444341 1122222222321 11222 221111 1223344544433322 2
Q ss_pred cEEEEcC---CCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHH--HHHHHHHHHHc-CccEeehhcHH
Q 014017 348 DILLVKP---GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV--MMESLMCLRRA-GADIILTYFAL 421 (432)
Q Consensus 348 D~lMVKP---al~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~--~~EsL~~ikRA-GAd~IiTYfA~ 421 (432)
..+.+-. ......+++++++ .+++|..+-+.|++ ..|..|...+ --+....+... |+|+|+|-+-.
T Consensus 194 ~~~~~~~~~~~~~~~~~v~~~~~-~g~~v~~nTlw~~~-------~~g~~d~~a~~d~~~~~~~l~~~~Gvd~I~TD~P~ 265 (278)
T 3i10_A 194 AAFEIIYSDPKNPLPPKIKQLLF-KKSLIWYNTLWGSL-------AGNHDDNLALTDPEKSYGYLIEQLGARILQTDQPA 265 (278)
T ss_dssp SEEEEEBCCTTCSSHHHHHHHHT-TTSEEEEECSSGGG-------BTTCCHHHHHHCHHHHHHHHHHTTCEEEEEESCHH
T ss_pred eEEEEeecCCccchHHHHHHHHH-CCCEEEEEeccccc-------ccCccchhhccChHHHHHHHHhcCCCCEEEeCCHH
Confidence 3222222 2334677888774 67999999988885 3466554322 13567788899 99999999999
Q ss_pred HHHHHHhccC
Q 014017 422 QAARCLCGEK 431 (432)
Q Consensus 422 ~~a~wL~~~~ 431 (432)
.+.+||+..+
T Consensus 266 ~l~~yL~~~~ 275 (278)
T 3i10_A 266 YLLDYLRKKG 275 (278)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHhhcc
Confidence 9999998643
No 77
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=78.88 E-value=4.4 Score=40.12 Aligned_cols=99 Identities=21% Similarity=0.333 Sum_probs=66.3
Q ss_pred hhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE-----cCCCc--------------hhHHHHHHHh
Q 014017 308 ALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLV-----KPGLP--------------YLDVIRLLRD 367 (432)
Q Consensus 308 Aa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV-----KPal~--------------YLDII~~vk~ 367 (432)
.++-+|. |-| . ..+.++|+..++.=++||||||=| .|+-. -+-+|+.+++
T Consensus 33 IlNvTpDSFsd--~--------~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~ 102 (314)
T 3tr9_A 33 IINVSPNSFYH--P--------HLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKK 102 (314)
T ss_dssp EEECSTTCSBC--B--------CCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCchhh--c--------cCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHh
Confidence 3556664 656 2 335689999999999999999987 46655 3457888888
Q ss_pred hCCCCeEEEEechhhHHHHHHHHCCC--chh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 368 KYPLPIAAYQVSGEYSMIKAGGALKM--IDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 368 ~~~lPvaaYqVSGEYaMikaAa~~G~--id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
.+++||..=. =....+++|.++|. ||. .+ .-|.+.-+++.|+-+|+...
T Consensus 103 ~~~vpISIDT--~~~~Va~aAl~aGa~iINDVsg~~-~~~m~~v~a~~g~~vVlMh~ 156 (314)
T 3tr9_A 103 RFPQLISVDT--SRPRVMREAVNTGADMINDQRALQ-LDDALTTVSALKTPVCLMHF 156 (314)
T ss_dssp HCCSEEEEEC--SCHHHHHHHHHHTCCEEEETTTTC-STTHHHHHHHHTCCEEEECC
T ss_pred hCCCeEEEeC--CCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHhCCeEEEECC
Confidence 8899987643 34456777777763 221 11 12445556778999988653
No 78
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=78.60 E-value=9.1 Score=37.29 Aligned_cols=166 Identities=25% Similarity=0.283 Sum_probs=97.8
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeec-CCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPK-VPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgv-i~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVc 220 (432)
|||+|=... ..-+-+.|++.+.+=|- +... +..+.+-+++ ...++.|.+..+ +-|++|.=
T Consensus 21 ~~~a~D~~s-------A~~~~~aG~~ai~vs~~~~a~~------~~G~pD~~~vt~~em~~~~~~I~~~~~-~PviaD~d 86 (295)
T 1xg4_A 21 IVGTINANH-------ALLAQRAGYQAIYLSGGGVAAG------SLGLPDLGISTLDDVLTDIRRITDVCS-LPLLVDAD 86 (295)
T ss_dssp EEECSSHHH-------HHHHHHTTCSCEEECHHHHHHT------TTCCCSSSCSCHHHHHHHHHHHHHHCC-SCEEEECT
T ss_pred EecCcCHHH-------HHHHHHcCCCEEEECchHhhhh------hcCCCCCCCCCHHHHHHHHHHHHhhCC-CCEEecCC
Confidence 677743332 22334579999988322 1110 1123333443 355666766654 44777753
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------Cc--------hHHHHHHHHHHCC
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------DG--------RVGAIRAALDAEG 284 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------DG--------rV~aIR~aLD~~G 284 (432)
. |+=+|-+. ..+.+-.+.++||+.|--.|=. .| .+..||.+.+...
T Consensus 87 ~---------------Gyg~~~~~---~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~ 148 (295)
T 1xg4_A 87 I---------------GFGSSAFN---VARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKT 148 (295)
T ss_dssp T---------------CSSSSHHH---HHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCS
T ss_pred c---------------ccCCCHHH---HHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhcc
Confidence 2 21123333 3344455557999998766542 11 2445555555543
Q ss_pred CccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHH
Q 014017 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRL 364 (432)
Q Consensus 285 f~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~ 364 (432)
..+.-|+.-+--++. . ..+|+|+.+..=.+-|||+|++. +.+-.|.+++
T Consensus 149 ~~~~~i~aRtda~~~------------------------~------gl~~ai~ra~ay~eAGAd~i~~e-~~~~~~~~~~ 197 (295)
T 1xg4_A 149 DPDFVIMARTDALAV------------------------E------GLDAAIERAQAYVEAGAEMLFPE-AITELAMYRQ 197 (295)
T ss_dssp STTSEEEEEECCHHH------------------------H------CHHHHHHHHHHHHHTTCSEEEET-TCCSHHHHHH
T ss_pred CCCcEEEEecHHhhh------------------------c------CHHHHHHHHHHHHHcCCCEEEEe-CCCCHHHHHH
Confidence 233444444332220 1 24789999998889999999995 6788999999
Q ss_pred HHhhCCCCeEE
Q 014017 365 LRDKYPLPIAA 375 (432)
Q Consensus 365 vk~~~~lPvaa 375 (432)
+.+..++|+.+
T Consensus 198 i~~~~~iP~~~ 208 (295)
T 1xg4_A 198 FADAVQVPILA 208 (295)
T ss_dssp HHHHHCSCBEE
T ss_pred HHHHcCCCEEE
Confidence 99999999977
No 79
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=78.46 E-value=17 Score=34.60 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=69.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+. ++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 16 ~~dg~iD~~~-l~~lv---~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 80 (294)
T 3b4u_A 16 KTDGTVDIDA-MIAHA---RRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGI-APSRIVTGVL---------- 80 (294)
T ss_dssp CTTSSBCHHH-HHHHH---HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTC-CGGGEEEEEC----------
T ss_pred CCCCCcCHHH-HHHHH---HHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 3568887443 34443 3456789998876553 2246667777776654 3566654321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchh-----HHH---HHHHhhC---CCCeE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYL-----DVI---RLLRDKY---PLPIA 374 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YL-----DII---~~vk~~~---~lPva 374 (432)
-.|.+|++..+..=.+-|||.+||=|-..|- .++ +.+.+.. ++||.
T Consensus 81 -----------------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPii 137 (294)
T 3b4u_A 81 -----------------------VDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDIL 137 (294)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEE
T ss_pred -----------------------CccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEE
Confidence 2356788877776667899999996653322 233 4666777 89999
Q ss_pred EEEech
Q 014017 375 AYQVSG 380 (432)
Q Consensus 375 aYqVSG 380 (432)
.|++-|
T Consensus 138 lYn~P~ 143 (294)
T 3b4u_A 138 VYNIPS 143 (294)
T ss_dssp EEECHH
T ss_pred EEECcc
Confidence 999743
No 80
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=77.92 E-value=5.6 Score=37.70 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHhchhcCCcEEEEcCCC--------chhHHHHHHHhhC-CCCe-EEEEec---hhh---------HHH
Q 014017 328 LYANYREALVEAQADESEGADILLVKPGL--------PYLDVIRLLRDKY-PLPI-AAYQVS---GEY---------SMI 385 (432)
Q Consensus 328 ~p~N~~EAlre~~~Di~EGAD~lMVKPal--------~YLDII~~vk~~~-~lPv-aaYqVS---GEY---------aMi 385 (432)
...+.+|++.++..=.+.|||+|=..=.. .-.+.++.+++.. ++|+ +.|--. |+| ..+
T Consensus 27 ~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll 106 (257)
T 2yr1_A 27 VGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLI 106 (257)
T ss_dssp CCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCHHHHHHHH
Confidence 35677888877776577899998654331 1234667888877 7995 444322 334 688
Q ss_pred HHHHHCC---Cchhh----HHHHHHHHHHHHcCccEeehhc
Q 014017 386 KAGGALK---MIDEQ----RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 386 kaAa~~G---~id~~----~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+.+.+.| ++|-+ +.+.+.+...++.|..+|++|+
T Consensus 107 ~~~~~~g~~d~iDvEl~~~~~~~~l~~~~~~~~~kvI~S~H 147 (257)
T 2yr1_A 107 EAICRSGAIDLVDYELAYGERIADVRRMTEECSVWLVVSRH 147 (257)
T ss_dssp HHHHHHTCCSEEEEEGGGTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHcCCCCEEEEECCCChhHHHHHHHHHhCCCEEEEEec
Confidence 8999888 56633 1444555567788999999997
No 81
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=77.69 E-value=5.9 Score=36.82 Aligned_cols=138 Identities=12% Similarity=0.001 Sum_probs=79.0
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 014017 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (432)
Q Consensus 202 aIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (432)
-.+.|++.+|+ ++-++|....||-. -..++-.+.+.+.+-.+.+.|||.|.=..--+
T Consensus 15 v~~~l~~~lP~~~~iy~~D~~~~Pyg~------------~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~lr 82 (255)
T 2jfz_A 15 VLKSLLKARLFDEIIYYGDSARVPYGT------------KDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQ 82 (255)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCCTT------------SCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHH
T ss_pred HHHHHHHHCCCCCEEEEeCCCCCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH
Confidence 46778888995 77778999889832 13455556666666667788999775332111
Q ss_pred --------c-hHHHHHHHHHH--CCCccceeecchhhhccccchhhhhhhhCCCCC-CCccccc-ccccC---C-CCCHH
Q 014017 271 --------G-RVGAIRAALDA--EGFQHVSIMSYTAKYASSFYGPFREALDSNPRF-GDKKTYV-IRVIE---L-YANYR 333 (432)
Q Consensus 271 --------G-rV~aIR~aLD~--~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~-gDRktYQ-md~~~---~-p~N~~ 333 (432)
| -..+++.++.. .+..+++||+=..--.|.+|.-+-+..+ .-.. +.. +-. ++.++ + ....+
T Consensus 83 ~~~~iPvigii~~av~~A~~~~~~~~~rigVlaT~~T~~~~~y~~~l~~~g-~~~v~~~~-~~~lv~~ie~g~~~~~~~~ 160 (255)
T 2jfz_A 83 KYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQG-YLNISHLA-TSLFVPLIEESILEGELLE 160 (255)
T ss_dssp HHCSSCEECSSHHHHHHHHHHCCCTTSCEEEEECHHHHHHTHHHHHHHHTT-CCCEEEEE-CTTHHHHHHTTCCSSHHHH
T ss_pred HhCCCCEEeeeHHHHHHHHHhhcCCCCEEEEEECHHHHhChHHHHHHHHcC-CCEEEecC-hHHHHHHHHhcccCCHHHH
Confidence 2 44566777765 5667899997555556667654444333 1010 000 000 00000 0 11134
Q ss_pred HHHHHHHhchhcCCcEEEEc
Q 014017 334 EALVEAQADESEGADILLVK 353 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVK 353 (432)
+.+++.....++|+|.|+.=
T Consensus 161 ~~l~~~~~~~~~~~d~iILG 180 (255)
T 2jfz_A 161 TCMHYYFTPLEILPEVIILG 180 (255)
T ss_dssp HHHHHHHTTCCSCCSEEEEE
T ss_pred HHHHHHHhhhcCCCCEEEEc
Confidence 55666655556799998875
No 82
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=77.58 E-value=7 Score=38.14 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=82.4
Q ss_pred HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc--ccccccccCCC
Q 014017 252 AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK--KTYVIRVIELY 329 (432)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p 329 (432)
|....+||+|+|.-.|. ++. -..|+.|+..++..-=-.- =.--+.++..+|-..|= -+||.+ |
T Consensus 30 A~l~e~aG~d~ilvGdS----l~~-----~~lG~~dt~~vTldemi~h--~~aV~r~~~~~~vvaD~pfgsy~~s----~ 94 (275)
T 1o66_A 30 AALMDDAGVEMLLVGDS----LGM-----AVQGRKSTLPVSLRDMCYH--TECVARGAKNAMIVSDLPFGAYQQS----K 94 (275)
T ss_dssp HHHHHHTTCCEEEECTT----HHH-----HTTCCSSSTTCCHHHHHHH--HHHHHHHCSSSEEEEECCTTSSSSC----H
T ss_pred HHHHHHcCCCEEEECHH----HHH-----HHcCCCCCCCCCHHHHHHH--HHHHHhhCCCCeEEEECCCCCccCC----H
Confidence 44455789999975443 222 2467777766655321000 00122233322221221 167765 4
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEE--------EEechhhHHHHHHHHCCCchhhHHHH
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAA--------YQVSGEYSMIKAGGALKMIDEQRVMM 401 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaa--------YqVSGEYaMikaAa~~G~id~~~~~~ 401 (432)
.++++.+.+=++-||+.|-..=+.-..|.|+.+.+ -.+||.+ -+.-|-|-.+- +. +.-+-++
T Consensus 95 ---~~a~~na~rl~kaGa~aVklEdg~e~~~~I~al~~-agIpV~gHiGLtPQs~~~~ggf~v~g----rt--~~a~~~i 164 (275)
T 1o66_A 95 ---EQAFAAAAELMAAGAHMVKLEGGVWMAETTEFLQM-RGIPVCAHIGLTPQSVFAFGGYKVQG----RG--GKAQALL 164 (275)
T ss_dssp ---HHHHHHHHHHHHTTCSEEEEECSGGGHHHHHHHHH-TTCCEEEEEESCGGGTTC-----------------CHHHHH
T ss_pred ---HHHHHHHHHHHHcCCcEEEECCcHHHHHHHHHHHH-cCCCeEeeeccCceeecccCCeEEEe----Ch--HHHHHHH
Confidence 88888777777799999999988788999999987 4788872 12224454321 11 1225578
Q ss_pred HHHHHHHHcCccEeeh
Q 014017 402 ESLMCLRRAGADIILT 417 (432)
Q Consensus 402 EsL~~ikRAGAd~IiT 417 (432)
|-..++..||||.|+-
T Consensus 165 ~rA~a~~eAGA~~ivl 180 (275)
T 1o66_A 165 NDAKAHDDAGAAVVLM 180 (275)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCcEEEE
Confidence 8889999999999964
No 83
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=77.31 E-value=17 Score=33.76 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=76.1
Q ss_pred HHHHHHHHHHcCCCeecCCC----CCCc---------------------hHHHHHHHHHHCCCccceeecchhhhccccc
Q 014017 248 LCKQAVSQARAGADVVSPSD----MMDG---------------------RVGAIRAALDAEGFQHVSIMSYTAKYASSFY 302 (432)
Q Consensus 248 Lak~Avs~A~AGADiVAPSD----MMDG---------------------rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfY 302 (432)
|.+.|-.+..+|+|+|+=+. |.-| -+.++.++|...|.++|+|++=-.+--+.+|
T Consensus 55 l~~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~al~~~g~~rvglltpy~~~~~~~~ 134 (240)
T 3ixl_A 55 VVDHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNGLRALGVRRVALATAYIDDVNERL 134 (240)
T ss_dssp HHHHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHHHHHTTCSEEEEEESSCHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHHHHHhCCCEEEEEeCChHHHHHHH
Confidence 47778889999999998774 5433 3578888999999999999975333333444
Q ss_pred hhhhhhhhCC---CC-CC--C-cccccccccCCCCCHHHHHHHHHhc---hhcCCcEEEEc-CCCchhHHHHHHHhhCCC
Q 014017 303 GPFREALDSN---PR-FG--D-KKTYVIRVIELYANYREALVEAQAD---ESEGADILLVK-PGLPYLDVIRLLRDKYPL 371 (432)
Q Consensus 303 GPFRdAa~Sa---p~-~g--D-RktYQmd~~~~p~N~~EAlre~~~D---i~EGAD~lMVK-Pal~YLDII~~vk~~~~l 371 (432)
--|=++.|=. |. +| + -.--+++ .+.+.++... ..+|||.|++= =.++.+++|..+.+.+++
T Consensus 135 ~~~l~~~Giev~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~adaivL~CT~l~~l~~i~~le~~lg~ 206 (240)
T 3ixl_A 135 AAFLAEESLVPTGCRSLGITGVEAMARVD--------TATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGV 206 (240)
T ss_dssp HHHHHHTTCEEEEEEECCCCCHHHHHTCC--------HHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSS
T ss_pred HHHHHHCCCEEeccccCCCCCcchhhcCC--------HHHHHHHHHHHhhcCCCCCEEEEeCCCCchhhhHHHHHHHhCC
Confidence 3222222211 11 11 1 0111233 3455555555 36799988764 566789999999999999
Q ss_pred CeE
Q 014017 372 PIA 374 (432)
Q Consensus 372 Pva 374 (432)
||.
T Consensus 207 PVi 209 (240)
T 3ixl_A 207 PVV 209 (240)
T ss_dssp CEE
T ss_pred CEE
Confidence 993
No 84
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=77.25 E-value=12 Score=36.82 Aligned_cols=166 Identities=22% Similarity=0.261 Sum_probs=98.0
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEee-cCCCCCCCcccCcCcCCCCCH-----HHHHHHHHHHCCCeEEEeeec
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLV-----PRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFg-vi~~~~Kd~~gs~A~n~~g~v-----~raIr~iK~~fPdl~IitDVc 220 (432)
|||+|=... ..-+-+.|++.+.+=| -+.. +..+.+.+++ ...++.|.+.. ++-|++|.=
T Consensus 33 ~~~ayD~~s-------A~l~e~aG~dai~vs~~s~a~-------~~G~pD~~~vt~~em~~~~~~I~r~~-~~pviaD~d 97 (305)
T 3ih1_A 33 IPGAHDAMA-------ALVARNTGFLALYLSGAAYTA-------SKGLPDLGIVTSTEVAERARDLVRAT-DLPVLVDID 97 (305)
T ss_dssp EEBCSSHHH-------HHHHHHTTCSCEEECHHHHHH-------HHTCCSSSCSCHHHHHHHHHHHHHHH-CCCEEEECT
T ss_pred EecCcCHHH-------HHHHHHcCCCEEEECcHHHHH-------hCCCCCCCcCCHHHHHHHHHHHHHhc-CCCEEEECC
Confidence 677754332 2223447999988832 1110 1123333443 34455555544 456888853
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--------C--------chHHHHHHHHHHCC
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--------D--------GRVGAIRAALDAEG 284 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--------D--------GrV~aIR~aLD~~G 284 (432)
. .| | |. ....+.+-.+.++||+.|--.|-. + -.+..||.+.+. |
T Consensus 98 ~-Gy------------g---~~---~~v~~~v~~l~~aGaagv~iED~~~~krcGh~~gk~l~~~~e~~~rI~Aa~~A-~ 157 (305)
T 3ih1_A 98 T-GF------------G---GV---LNVARTAVEMVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKEV-A 157 (305)
T ss_dssp T-CS------------S---SH---HHHHHHHHHHHHTTCSEEEEECBCSSCCTTCTTCCCBCCHHHHHHHHHHHHHH-C
T ss_pred C-CC------------C---CH---HHHHHHHHHHHHhCCcEEEECCCCCCcccCCCCCCcccCHHHHHHHHHHHHHc-C
Confidence 2 12 1 12 223444556678999988655532 1 124555555554 4
Q ss_pred CccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHH
Q 014017 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRL 364 (432)
Q Consensus 285 f~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~ 364 (432)
.+.-|++-+--++ .. ..+|||+.+..=.+-|||+|++ |+.+-.|.+++
T Consensus 158 -~~~~I~ARtda~~------------------------~~------g~~~ai~Ra~ay~eAGAD~i~~-e~~~~~~~~~~ 205 (305)
T 3ih1_A 158 -PSLYIVARTDARG------------------------VE------GLDEAIERANAYVKAGADAIFP-EALQSEEEFRL 205 (305)
T ss_dssp -TTSEEEEEECCHH------------------------HH------CHHHHHHHHHHHHHHTCSEEEE-TTCCSHHHHHH
T ss_pred -CCeEEEEeecccc------------------------cc------CHHHHHHHHHHHHHcCCCEEEE-cCCCCHHHHHH
Confidence 2455555433221 11 3579999998888889999999 67788999999
Q ss_pred HHhhCCCCeEEEEec
Q 014017 365 LRDKYPLPIAAYQVS 379 (432)
Q Consensus 365 vk~~~~lPvaaYqVS 379 (432)
+.+..++|+.+=-+.
T Consensus 206 i~~~~~~P~~~n~~~ 220 (305)
T 3ih1_A 206 FNSKVNAPLLANMTE 220 (305)
T ss_dssp HHHHSCSCBEEECCT
T ss_pred HHHHcCCCEEEeecC
Confidence 999999999764443
No 85
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=76.98 E-value=3.8 Score=40.51 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=57.7
Q ss_pred HHHHHHHHHhchhcCCcEEEEc-----CCCch----------hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC--C
Q 014017 332 YREALVEAQADESEGADILLVK-----PGLPY----------LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK--M 393 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~lMVK-----Pal~Y----------LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G--~ 393 (432)
.++|+..++.-++||||||=|= |+ .. +-+|+.+++.+ ++||..= |=....+++|.++| +
T Consensus 64 ~~~a~~~A~~~v~~GAdIIDIGgeSTrPG-~~v~~~eEl~Rv~pvI~~l~~~~~~vpISID--T~~~~VaeaAl~aGa~i 140 (318)
T 2vp8_A 64 DAAARDAVHRAVADGADVIDVGGVKAGPG-ERVDVDTEITRLVPFIEWLRGAYPDQLISVD--TWRAQVAKAACAAGADL 140 (318)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEC-----------CHHHHHHHHHHHHHHHHHHSTTCEEEEE--CSCHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcCCCC-CCCCHHHHHHHHHHHHHHHHhhCCCCeEEEe--CCCHHHHHHHHHhCCCE
Confidence 3889999999999999999887 77 44 55688888887 8998652 44556778887776 3
Q ss_pred chh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 394 IDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 394 id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
||. .+ .-|.+.-.++.|+-+|+...
T Consensus 141 INDVsg~~-d~~m~~vaa~~g~~vVlmh~ 168 (318)
T 2vp8_A 141 INDTWGGV-DPAMPEVAAEFGAGLVCAHT 168 (318)
T ss_dssp EEETTSSS-STTHHHHHHHHTCEEEEECC
T ss_pred EEECCCCC-chHHHHHHHHhCCCEEEECC
Confidence 331 00 11334456788999999765
No 86
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=76.35 E-value=8.5 Score=34.68 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEE-EE--echhhHHHHHHHHCCC------
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA-YQ--VSGEYSMIKAGGALKM------ 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaa-Yq--VSGEYaMikaAa~~G~------ 393 (432)
..|.+++++.+.. ++.|+|++=+ +++. +++|+.+|+.+ +.|+.. ++ ..|++ .++.++++|.
T Consensus 15 ~~~~~~~~~~~~~-~~~~vd~ie~--g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~-~~~~~~~aGad~i~vh 90 (218)
T 3jr2_A 15 QTNLTDAVAVASN-VASYVDVIEV--GTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAI-LSRMAFEAGADWITVS 90 (218)
T ss_dssp CSSHHHHHHHHHH-HGGGCSEEEE--CHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHH-HHHHHHHHTCSEEEEE
T ss_pred CCCHHHHHHHHHH-hcCCceEEEe--CcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHH-HHHHHHhcCCCEEEEe
Confidence 7899999988887 7779998733 3222 89999999985 677753 22 24565 5577777773
Q ss_pred -chhhHHHHHHHHHHHHcCccEe
Q 014017 394 -IDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 394 -id~~~~~~EsL~~ikRAGAd~I 415 (432)
...++.+-|.+..+++.|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~ 113 (218)
T 3jr2_A 91 AAAHIATIAACKKVADELNGEIQ 113 (218)
T ss_dssp TTSCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCCHHHHHHHHHHHHHhCCccc
Confidence 1113456677788888888875
No 87
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3
Probab=76.31 E-value=4 Score=37.48 Aligned_cols=149 Identities=19% Similarity=0.142 Sum_probs=78.1
Q ss_pred cCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014017 191 EAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (432)
Q Consensus 191 ~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD 270 (432)
+-|- .|+ ..++.||+. +..|+.|+=+ + |--.|+...++.+ +++|||+|.=+-.+.
T Consensus 42 ~l~~-~G~--~~v~~l~~~--~~~v~lD~K~---------------~--DI~nT~~~~v~~~---~~~GaD~vTvh~~~G 96 (213)
T 1vqt_A 42 NLAI-HGK--KIFDELAKR--NLKIILDLKF---------------C--DIPSTVERSIKSW---DHPAIIGFTVHSCAG 96 (213)
T ss_dssp HHHT-TCT--HHHHHHHTT--TCEEEEEEEE---------------C--SCHHHHHHHHHHH---CCTTEEEEEEEGGGC
T ss_pred HHHh-hCH--HHHHHHHHC--CCCEEEEeec---------------c--cCchHHHHHHHHH---HHCCCCEEEEeccCC
Confidence 3455 565 468888875 6778877654 2 3455666555544 579999996554443
Q ss_pred chHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEE
Q 014017 271 GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADIL 350 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l 350 (432)
- ..|+.+++...-..+.+.-- ++..++++ +...+.+.+ .+-|+|
T Consensus 97 ~--~~l~~~~~~~~~~~~~V~~l-----ts~~~~l~--------------------------~~v~~~a~~-~e~G~d-- 140 (213)
T 1vqt_A 97 Y--ESVERALSATDKHVFVVVKL-----TSMEGSLE--------------------------DYMDRIEKL-NKLGCD-- 140 (213)
T ss_dssp H--HHHHHHHHHCSSEEEEECCC-----TTSCCCHH--------------------------HHHHHHHHH-HHHTCE--
T ss_pred H--HHHHHHHHhcCCCeEEEEEe-----CCCCHHHH--------------------------HHHHHHHHH-hcCCCE--
Confidence 2 24555554442001111100 01111111 233444555 677999
Q ss_pred EEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 351 LVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 351 MVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+|+.+ +-++.+|+.++-| .|.|=+-.- .+-=|.++++ +... .+||||+|+
T Consensus 141 vV~~~----~~~~~ir~~~~~~----~v~pGI~~~-----~~~~dq~rv~--t~~~-i~aGad~iV 190 (213)
T 1vqt_A 141 FVLPG----PWAKALREKIKGK----ILVPGIRME-----VKADDQKDVV--TLEE-MKGIANFAV 190 (213)
T ss_dssp EECCH----HHHHHHTTTCCSC----EEECCBC--------------CCB--CHHH-HTTTCSEEE
T ss_pred EEEcH----HHHHHHHHHCCCC----EEECCCCCC-----CCccchhhcC--CHHH-HHCCCCEEE
Confidence 45543 6778888877666 666533211 1101333332 5666 799999987
No 88
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A
Probab=76.10 E-value=19 Score=34.98 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=70.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPY 224 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc~Y 224 (432)
||.=|--+.. .+.+.++++.+.|+..|.|=+-..+..-.-.|....-+..-...-|+++++.- ++..|++=.
T Consensus 85 ~d~Gyg~~~~-~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRt----- 158 (295)
T 1xg4_A 85 ADIGFGSSAF-NVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMART----- 158 (295)
T ss_dssp CTTCSSSSHH-HHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE-----
T ss_pred CCcccCCCHH-HHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEec-----
Confidence 3333443453 58899999999999999994432111000111112333333445667777663 455554211
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHH
Q 014017 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALD 281 (432)
Q Consensus 225 TshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD 281 (432)
|.. -...++.+.+-|..+++||||+|-+-.+-| -.+..|.++|+
T Consensus 159 -----------da~--~~~gl~~ai~ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 159 -----------DAL--AVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQ 203 (295)
T ss_dssp -----------CCH--HHHCHHHHHHHHHHHHHTTCSEEEETTCCSHHHHHHHHHHHC
T ss_pred -----------HHh--hhcCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHcC
Confidence 000 023467888899999999999998888776 67788888874
No 89
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=75.92 E-value=12 Score=34.80 Aligned_cols=45 Identities=13% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEE--EE-c----CCCch-hHHHHHHHhhCCCCeEEEE
Q 014017 329 YANYREALVEAQADESEGADIL--LV-K----PGLPY-LDVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~l--MV-K----Pal~Y-LDII~~vk~~~~lPvaaYq 377 (432)
+.|..|+++.+ +.|||++ =| . |.+.| .++|+.+|+.+++|+-+--
T Consensus 12 ~~~l~~~i~~~----~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhL 64 (231)
T 3ctl_A 12 LLKFKEQIEFI----DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHL 64 (231)
T ss_dssp GGGHHHHHHHH----HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEE
T ss_pred hhhHHHHHHHH----HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEE
Confidence 67778877766 6899974 12 2 55444 7899999998888876643
No 90
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=75.55 E-value=9.3 Score=29.93 Aligned_cols=62 Identities=5% Similarity=-0.044 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+..... +..|+|+ -|.+.-+++++.+++.. .+|+..+.-..+...+..+.+.|..
T Consensus 48 ~~~~~~al~~l~~---~~~dlvi-~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 110 (137)
T 2pln_A 48 TESLEDGEYLMDI---RNYDLVM-VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGAD 110 (137)
T ss_dssp ESCHHHHHHHHHH---SCCSEEE-ECSTTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHHHTTCS
T ss_pred eCCHHHHHHHHHc---CCCCEEE-EcCccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHcCCc
Confidence 5577888876643 4689999 78888899999999886 6899988765555555555555543
No 91
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=75.52 E-value=19 Score=34.24 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=22.5
Q ss_pred HHHCCCchh---hHHHHHHHHHHHHcCccEee
Q 014017 388 GGALKMIDE---QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 388 Aa~~G~id~---~~~~~EsL~~ikRAGAd~Ii 416 (432)
..++|+++. ++.+.|.+..+++.|+|.||
T Consensus 171 ~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IV 202 (290)
T 2vvt_A 171 IVESNQYRSSVAKKIVAETLQALQLKGLDTLI 202 (290)
T ss_dssp HHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEE
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 456888863 35678888888888999998
No 92
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=74.75 E-value=11 Score=34.64 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchh--hHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE--QRVMMESLMC 406 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~--~~~~~EsL~~ 406 (432)
+.+..|+.+.+ .+.|||+|-+.|. .=++.++++++..++|+.+- |-++. .+-++|.+..
T Consensus 165 ~~~~~~~a~~a---~~~Gad~i~~~~~-~~~~~l~~i~~~~~ipvva~---------------GGi~~~~~~~~~~~~~~ 225 (273)
T 2qjg_A 165 PELVAHAARLG---AELGADIVKTSYT-GDIDSFRDVVKGCPAPVVVA---------------GGPKTNTDEEFLQMIKD 225 (273)
T ss_dssp HHHHHHHHHHH---HHTTCSEEEECCC-SSHHHHHHHHHHCSSCEEEE---------------CCSCCSSHHHHHHHHHH
T ss_pred HhHHHHHHHHH---HHcCCCEEEECCC-CCHHHHHHHHHhCCCCEEEE---------------eCCCCCCHHHHHHHHHH
Confidence 33334443433 4689999999975 34788999999999999873 23332 3455677777
Q ss_pred HHHcCccEeeh
Q 014017 407 LRRAGADIILT 417 (432)
Q Consensus 407 ikRAGAd~IiT 417 (432)
+.++||+.|..
T Consensus 226 ~~~~Ga~gv~v 236 (273)
T 2qjg_A 226 AMEAGAAGVAV 236 (273)
T ss_dssp HHHHTCSEEEC
T ss_pred HHHcCCcEEEe
Confidence 77889987754
No 93
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=74.59 E-value=11 Score=35.22 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=30.3
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCch---------------------------hHHHHHHHhhC-CCCeEEE
Q 014017 331 NYREALVEAQADESEGADILLVKPGLPY---------------------------LDVIRLLRDKY-PLPIAAY 376 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~Y---------------------------LDII~~vk~~~-~lPvaaY 376 (432)
+.++.++-+..=.+-|+|+|.+ +.|| +++++++|+.+ ++|+...
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IEl--G~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m 100 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEI--GFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLM 100 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEE--ECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred ChHHHHHHHHHHHHcCCCEEEE--CCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 3344433333223467999999 6665 47899999998 8999883
No 94
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=74.43 E-value=23 Score=27.46 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHh--h-CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRD--K-YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~--~-~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|+|++- |.+.-+++++.+++ . ..+|+..+.-+.+...+..+.+.|..+
T Consensus 40 ~~~~~~a~~~l~~---~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 109 (143)
T 3cnb_A 40 AYNPFDAGDLLHT---VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAET 109 (143)
T ss_dssp ECSHHHHHHHHHH---TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSE
T ss_pred ECCHHHHHHHHHh---cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcE
Confidence 5577888876653 458999986 66677899999998 3 369999988777776666666666544
No 95
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=74.42 E-value=15 Score=35.82 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeE
Q 014017 332 YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPva 374 (432)
.+|+|+.+..=.+-|||+|++. +.+-.+.++++.+..++|+.
T Consensus 167 l~~ai~Ra~ay~eAGAd~i~~e-~~~~~~~~~~i~~~~~~P~i 208 (287)
T 3b8i_A 167 VDAVIQRTLAYQEAGADGICLV-GVRDFAHLEAIAEHLHIPLM 208 (287)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE-CCCSHHHHHHHHTTCCSCEE
T ss_pred HHHHHHHHHHHHHcCCCEEEec-CCCCHHHHHHHHHhCCCCEE
Confidence 4789999988888899999996 78889999999999999998
No 96
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=74.23 E-value=5.3 Score=36.30 Aligned_cols=52 Identities=29% Similarity=0.482 Sum_probs=36.7
Q ss_pred CCcEEEE---cCC---Cc----hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccE
Q 014017 346 GADILLV---KPG---LP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADI 414 (432)
Q Consensus 346 GAD~lMV---KPa---l~----YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~ 414 (432)
|+|+|.+ .|+ .. -++-|+++|+.. ++|+.+ .|-|+.+. +..+.++|||+
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v---------------~GGI~~~n-----i~~~~~aGaD~ 197 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEV---------------DGGLGPST-----IDVAASAGANC 197 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEE---------------ESSCSTTT-----HHHHHHHTCCE
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEE---------------ECCcCHHH-----HHHHHHcCCCE
Confidence 8999988 553 12 278889999887 788753 56677653 33456679999
Q ss_pred eeh
Q 014017 415 ILT 417 (432)
Q Consensus 415 IiT 417 (432)
|+.
T Consensus 198 vvv 200 (228)
T 1h1y_A 198 IVA 200 (228)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 97
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=73.91 E-value=11 Score=36.88 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=66.2
Q ss_pred hhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCc----------hhHHHHHHHhhCCCC
Q 014017 309 LDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLP----------YLDVIRLLRDKYPLP 372 (432)
Q Consensus 309 a~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~----------YLDII~~vk~~~~lP 372 (432)
++-+| +|-|--.|+ +.++|+..+..-+++|||||=|= |+.. ++.+|+.+++.+++|
T Consensus 46 lNvTPDSFsdgg~~~--------~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vp 117 (297)
T 1tx2_A 46 LNVTPDSFSDGGSYN--------EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLP 117 (297)
T ss_dssp CCCCCCTTCSSCBHH--------HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSC
T ss_pred EeCCCCccccCCccC--------CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCce
Confidence 45566 365543342 34889999999999999999887 5533 578889999888999
Q ss_pred eEEEEechhhHHHHHHHHCCC--chh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 373 IAAYQVSGEYSMIKAGGALKM--IDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G~--id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|..=.- .-..+++|.++|. ||. ....-|.+.-+++.|+-+|+...
T Consensus 118 iSIDT~--~~~V~~aAl~aGa~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~ 167 (297)
T 1tx2_A 118 ISIDTY--KAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHN 167 (297)
T ss_dssp EEEECS--CHHHHHHHHHHTCCEEEETTTTSSCTHHHHHHHHHTCCEEEECC
T ss_pred EEEeCC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeC
Confidence 976443 4456667666652 221 00011334456788999998774
No 98
>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A
Probab=73.78 E-value=25 Score=34.07 Aligned_cols=116 Identities=12% Similarity=0.050 Sum_probs=68.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc--CcCcCCCCCHHHHHHHHHHHC--CCeEEEeeeccc
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG--DEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALD 222 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~g--s~A~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc 222 (432)
||.=|- +.. ++.+.++++.+.|+..|.|=+.+....-.-.| ....-+-.-...-|+++++.. ++..|++=. |
T Consensus 82 ~d~Gyg-~~~-~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRt--d 157 (290)
T 2hjp_A 82 IDTGFG-NAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARV--E 157 (290)
T ss_dssp CTTTTS-SHH-HHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEE--C
T ss_pred CCCCCC-CHH-HHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee--h
Confidence 343355 554 58999999999999999994432110000011 111212112234566666663 667776422 1
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCC-chHHHHHHHHH
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MMD-GRVGAIRAALD 281 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-MMD-GrV~aIR~aLD 281 (432)
.+- . .. .++.+.+-|..+++||||+|-+-. +-| -.+..|.++|+
T Consensus 158 a~~-a-------~~-------g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 158 ALI-A-------GL-------GQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWP 203 (290)
T ss_dssp TTT-T-------TC-------CHHHHHHHHHHHHHTTCSEEEECCCCSSSHHHHHHHHHCC
T ss_pred Hhh-c-------cc-------cHHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHcC
Confidence 110 0 11 267778889999999999998877 766 67778887774
No 99
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=73.56 E-value=9.8 Score=34.93 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=46.7
Q ss_pred hhcCCcEEEEc----CCCchhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 343 ESEGADILLVK----PGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 343 i~EGAD~lMVK----Pal~YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.|||+|-+- ++..-++.++.+++.. ++||.+ +|-+...+-++|.| ++|||.|=
T Consensus 142 ~eaGad~I~tstg~~~gga~~~~i~~v~~~v~~~ipVia---------------~GGI~t~~da~~~l----~aGA~~iG 202 (225)
T 1mzh_A 142 IEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKA---------------SGGIRDLETAISMI----EAGADRIG 202 (225)
T ss_dssp HHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTSSEEEE---------------ESSCCSHHHHHHHH----HTTCSEEE
T ss_pred HHhCCCEEEECCCCCCCCCCHHHHHHHHHHhCCCCcEEE---------------ECCCCCHHHHHHHH----HhCchHHH
Confidence 56799999443 3344689999999876 689876 34444333334433 59999998
Q ss_pred hhcHHHHHHHHh
Q 014017 417 TYFALQAARCLC 428 (432)
Q Consensus 417 TYfA~~~a~wL~ 428 (432)
++...++.+-|.
T Consensus 203 ~s~~~~i~~~~~ 214 (225)
T 1mzh_A 203 TSSGISIAEEFL 214 (225)
T ss_dssp ESCHHHHHHHHH
T ss_pred HccHHHHHHHHH
Confidence 998888877554
No 100
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=72.96 E-value=7.7 Score=36.37 Aligned_cols=31 Identities=32% Similarity=0.755 Sum_probs=25.1
Q ss_pred hhcCCcEEEEcCCCch---------------------------hHHHHHHHhh-CCCCeEE
Q 014017 343 ESEGADILLVKPGLPY---------------------------LDVIRLLRDK-YPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y---------------------------LDII~~vk~~-~~lPvaa 375 (432)
.+.|||+|.+ +.|| +++|+++|+. .++|+..
T Consensus 41 ~~~GaD~iei--g~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~l 99 (268)
T 1qop_A 41 IDAGADALEL--GVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGL 99 (268)
T ss_dssp HHTTCSSEEE--ECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEE
T ss_pred HHCCCCEEEE--CCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 3468999999 5555 5889999999 7999877
No 101
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=72.57 E-value=8.5 Score=37.28 Aligned_cols=134 Identities=19% Similarity=0.312 Sum_probs=83.5
Q ss_pred HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc--ccccccccCCC
Q 014017 252 AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK--KTYVIRVIELY 329 (432)
Q Consensus 252 Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR--ktYQmd~~~~p 329 (432)
|....+||.|+|.-.|. ++. -..|+.++..++..-=-.- =.--+.++..+|-..|= -+|| + |
T Consensus 30 A~l~e~aG~d~ilvGds----l~~-----~~lG~~dt~~vtldemi~h--~~aV~r~~~~~~vvaD~pfgsy~-~----~ 93 (264)
T 1m3u_A 30 AKLFADEGLNVMLVGDS----LGM-----TVQGHDSTLPVTVADIAYH--TAAVRRGAPNCLLLADLPFMAYA-T----P 93 (264)
T ss_dssp HHHHHHHTCCEEEECTT----HHH-----HTTCCSSSTTCCHHHHHHH--HHHHHHHCTTSEEEEECCTTSSS-S----H
T ss_pred HHHHHHcCCCEEEECHH----HHH-----HHcCCCCCCCcCHHHHHHH--HHHHHhhCCCCcEEEECCCCCcC-C----H
Confidence 44455789999977552 222 2467777766554321000 01122333333321221 1566 5 4
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeE--------------EEEechhhHHHHHHHHCCCch
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIA--------------AYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPva--------------aYqVSGEYaMikaAa~~G~id 395 (432)
.++++.+.+=++-||+.|-..=+.-..|.|+.+.+ -.+||. .|.|-|.= |
T Consensus 94 ---~~a~~~a~rl~kaGa~aVklEgg~e~~~~I~al~~-agipV~gHiGLtPq~v~~~ggf~v~grt------------~ 157 (264)
T 1m3u_A 94 ---EQAFENAATVMRAGANMVKIEGGEWLVETVQMLTE-RAVPVCGHLGLTPQSVNIFGGYKVQGRG------------D 157 (264)
T ss_dssp ---HHHHHHHHHHHHTTCSEEECCCSGGGHHHHHHHHH-TTCCEEEEEESCGGGHHHHTSSCCCCCS------------H
T ss_pred ---HHHHHHHHHHHHcCCCEEEECCcHHHHHHHHHHHH-CCCCeEeeecCCceeecccCCeEEEeCC------------H
Confidence 88888777777799999999888788999999987 479987 34443321 1
Q ss_pred h-hHHHHHHHHHHHHcCccEeeh
Q 014017 396 E-QRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 396 ~-~~~~~EsL~~ikRAGAd~IiT 417 (432)
. -+-++|-..++..||||.|+-
T Consensus 158 ~~a~~~i~rA~a~~eAGA~~ivl 180 (264)
T 1m3u_A 158 EAGDQLLSDALALEAAGAQLLVL 180 (264)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHHHHCCCcEEEE
Confidence 1 145678888999999999964
No 102
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=72.48 E-value=19 Score=27.93 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|+|++= |++.=+++++.+++. .++|+....-.++......|.+.|..+
T Consensus 32 ~~~~~~al~~l~---~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~ 101 (122)
T 3gl9_A 32 AENGQIALEKLS---EFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARK 101 (122)
T ss_dssp ESSHHHHHHHHT---TBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHH---hcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCchHHHHHHHhcChhh
Confidence 457888887764 3568999987 666678999999875 369999987777777776666666544
No 103
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=72.45 E-value=21 Score=34.09 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=62.9
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCc-------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHC--C--Cch---h
Q 014017 331 NYREALVEAQADESEGADILLVKPGLP-------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGAL--K--MID---E 396 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~-------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~--G--~id---~ 396 (432)
+.++|+..+..-+++|||||=|--..+ ...+|+.+++.+++|+..=.- .-..+++|.++ | +|+ .
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT~--~~~v~~aal~a~~Ga~iINdvs~ 109 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDST--NPDAIEAGLKVHRGHAMINSTSA 109 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEECS--CHHHHHHHHHHCCSCCEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeCC--CHHHHHHHHHhCCCCCEEEECCC
Confidence 347899999999999999999876553 577888999989999977544 55566777666 4 333 1
Q ss_pred h-HHHHHHHHHHHHcCccEeehhc
Q 014017 397 Q-RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 397 ~-~~~~EsL~~ikRAGAd~IiTYf 419 (432)
. .-+-|.+.-.++.|+.+|+..+
T Consensus 110 ~~d~~~~~~~~~a~~~~~vv~m~~ 133 (271)
T 2yci_X 110 DQWKMDIFFPMAKKYEAAIIGLTM 133 (271)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEESC
T ss_pred CccccHHHHHHHHHcCCCEEEEec
Confidence 1 1123455566888999999877
No 104
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=72.10 E-value=18 Score=28.10 Aligned_cols=64 Identities=22% Similarity=0.184 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---C-CCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---P-GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---P-al~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|+|++= | .+.-+++++.+++...+|+..+.-..+...+..+.+.|..+
T Consensus 40 ~~~~~~a~~~~~~---~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 107 (140)
T 3cg0_A 40 FDNGEEAVRCAPD---LRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFG 107 (140)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHHTTCCSE
T ss_pred ECCHHHHHHHHHh---CCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhcCCCE
Confidence 4677888877653 458999986 4 56778999999988779999998877777777777777644
No 105
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=72.02 E-value=26 Score=27.61 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|+|++= |++.-+++++.+++...+|+....-..+-.....+.+.|..|
T Consensus 34 ~~~~~~al~~~~~---~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 100 (136)
T 2qzj_A 34 AYNCEEAIGKIFS---NKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINEDQSILNALNSGGDD 100 (136)
T ss_dssp ESSHHHHHHHHHH---CCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCHHHHHHHHHTTCCE
T ss_pred ECCHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCHHHHHHHHHcCCcE
Confidence 5678888876653 457999876 666678999999987789998876666655566666666654
No 106
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=71.76 E-value=30 Score=31.88 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=95.5
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC---------
Q 014017 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------- 270 (432)
Q Consensus 202 aIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------- 270 (432)
-.+.|++..|+ ++-++|..-.|| |.-..++-.+.+.+.+-.+.++|+|.|.=..--+
T Consensus 15 v~~~l~~~~P~~~~iy~~D~~~~py------------G~~s~~~i~~~~~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr 82 (254)
T 1b73_A 15 VLKAIRNRYRKVDIVYLGDTARVPY------------GIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLK 82 (254)
T ss_dssp HHHHHHHHSTTCEEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHTTSHHHHH
T ss_pred HHHHHHHhCCCCcEEEeecCCCCCC------------CcCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHHH
Confidence 56778888996 344499988888 2222334444455555556678999875433222
Q ss_pred --------c-hHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhh------CCCCCC-CcccccccccCCCCCHHH
Q 014017 271 --------G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALD------SNPRFG-DKKTYVIRVIELYANYRE 334 (432)
Q Consensus 271 --------G-rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~------Sap~~g-DRktYQmd~~~~p~N~~E 334 (432)
| -..+++.++...+-.+++||+-.....|.+|.-+-++.+ ..|.+- .=+.-+++ +.-.++
T Consensus 83 ~~~~iPvigi~e~~~~~A~~~~~~~rigVlaT~~T~~~~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~----~~~~~~ 158 (254)
T 1b73_A 83 KEINVPVFGVIEPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEGGADVFAKACPLFAPLAEEGLLE----GEITRK 158 (254)
T ss_dssp HHSSSCEEESHHHHHHHHHHHCSSCEEEEEECHHHHHHCHHHHHHHTTSCEEEEEECCCCTTTSCGGGGS----GGGHHH
T ss_pred HhCCCCEEeeeHHHHHHHHHccCCCEEEEEEChHHhhhHHHHHHHHcCCCEEEecCCHHHHHHHHCCCCC----CHHHHH
Confidence 2 223555666555667899998777777778765444322 112211 11112222 233466
Q ss_pred HHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHH
Q 014017 335 ALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 335 Alre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaA 388 (432)
.+++....+.+.+|.|+.== ..|--+...+++.+ ++|+ |++--++.+++
T Consensus 159 ~l~~~~~~l~~~~d~IILGC-T~~p~l~~~i~~~~~~vpv----iDs~~~~a~~~ 208 (254)
T 1b73_A 159 VVEHYLKEFKGKIDTLILGC-THYPLLKKEIKKFLGDAEV----VDSSEALSLSL 208 (254)
T ss_dssp HHHHHSTTTTTTCSEEEECC-CCTTCCHHHHHHHSCSCEE----ECHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCEEEECc-cChHHHHHHHHHHcCCCeE----ECCHHHHHHHH
Confidence 77787777653499988742 23333566666666 5664 35655666554
No 107
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=71.68 E-value=3.5 Score=39.05 Aligned_cols=48 Identities=31% Similarity=0.354 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHcCCCeecC-C----CC-CCc--hHHHHHHHHHHCCCccceeec
Q 014017 244 TVHQLCKQAVSQARAGADVVSP-S----DM-MDG--RVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAP-S----DM-MDG--rV~aIR~aLD~~Gf~~v~ImS 292 (432)
|+=--..||+.-|+|||+.|+| - |. .|| .|..|++.++.+|+ ++-||.
T Consensus 110 TlifS~~QA~~Aa~AGa~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~-~T~Ila 165 (223)
T 3s1x_A 110 TLVFNPIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYII-KTQILV 165 (223)
T ss_dssp EEECSHHHHHHHHHTTCSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTC-CSEEEE
T ss_pred EEeCCHHHHHHHHHcCCeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCC-CCEEEE
Confidence 3333456999999999999999 1 11 133 47888888888887 677776
No 108
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=71.65 E-value=9.2 Score=34.32 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch-HHHHHHH
Q 014017 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR-VGAIRAA 279 (432)
Q Consensus 201 raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGr-V~aIR~a 279 (432)
..|+.||+.+|+.-|+.|+-|. + +-.|+.. .++++|||+|.-.--+... +.+.++.
T Consensus 45 ~~i~~l~~~~p~~~v~lD~kl~-------d----------ip~t~~~------~~~~~Gad~itvh~~~g~~~l~~~~~~ 101 (216)
T 1q6o_A 45 RAVRDLKALYPHKIVLADAKIA-------D----------AGKILSR------MCFEANADWVTVICCADINTAKGALDV 101 (216)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-------S----------CHHHHHH------HHHHTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEEec-------c----------cHHHHHH------HHHhCCCCEEEEeccCCHHHHHHHHHH
Confidence 4699999999999999998772 1 2344432 5778999999665544433 6677777
Q ss_pred HHHCCC
Q 014017 280 LDAEGF 285 (432)
Q Consensus 280 LD~~Gf 285 (432)
+.+.|-
T Consensus 102 ~~~~g~ 107 (216)
T 1q6o_A 102 AKEFNG 107 (216)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777664
No 109
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=71.61 E-value=11 Score=36.30 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=37.6
Q ss_pred cCCcEEEEcCCC--------------chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHc
Q 014017 345 EGADILLVKPGL--------------PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 410 (432)
Q Consensus 345 EGAD~lMVKPal--------------~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRA 410 (432)
-|||+|-+..+. ..+|+|+.+|+.+++||..=-+ | .| ++. |....+..+
T Consensus 139 ~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~-~----------~~-~~~-----~~a~~a~~~ 201 (349)
T 1p0k_A 139 IGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEV-G----------FG-MSK-----ASAGKLYEA 201 (349)
T ss_dssp TTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEE-S----------SC-CCH-----HHHHHHHHH
T ss_pred cCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEec-C----------CC-CCH-----HHHHHHHHc
Confidence 479988655331 1579999999999999986433 1 11 232 334566788
Q ss_pred CccEeeh
Q 014017 411 GADIILT 417 (432)
Q Consensus 411 GAd~IiT 417 (432)
|||.|+.
T Consensus 202 Gad~I~v 208 (349)
T 1p0k_A 202 GAAAVDI 208 (349)
T ss_dssp TCSEEEE
T ss_pred CCCEEEE
Confidence 9998876
No 110
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=71.42 E-value=13 Score=28.19 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|++++= |++.-+++++.+++.. .+|+....-+++......+.+.|..+
T Consensus 33 ~~~~~~a~~~~~~---~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 100 (120)
T 1tmy_A 33 ATNGREAVEKYKE---LKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKD 100 (120)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHHHHHHHHHTTCCE
T ss_pred ECCHHHHHHHHHh---cCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHhCcce
Confidence 5678888877653 457999987 4445578999998865 59999988877777766666666644
No 111
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=71.28 E-value=16 Score=28.20 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
..|..||+.... ++..|+|++= |.+.-+++++.+|+.. .+|+....-..+......+.+.|.
T Consensus 37 ~~~~~~a~~~l~---~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~~~~g~ 102 (130)
T 3eod_A 37 AADGVDALELLG---GFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV 102 (130)
T ss_dssp ESCHHHHHHHHT---TCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHHHHHCC
T ss_pred eCCHHHHHHHHh---cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHHcCC
Confidence 456778777663 3458999887 6666799999999876 599998866555554444444444
No 112
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Probab=71.06 E-value=28 Score=34.26 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHH---HHHHHHHH----CCCeEEEeeecccCCCCCCcc
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPR---TIWLLKDR----YPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~r---aIr~iK~~----fPdl~IitDVcLc~YTshGHc 230 (432)
++.+.++++.+.|+..|.|=+.+.+ +| +|--.-.+==+... -|++.++. -||++|++=+- .|..
T Consensus 104 ~v~~~v~~l~~aGaagv~iEDq~~~-k~--cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTD--a~~~---- 174 (307)
T 3lye_A 104 MVARTVEHYIRSGVAGAHLEDQILT-KR--CGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTD--ALQS---- 174 (307)
T ss_dssp HHHHHHHHHHHTTCCEEEECCBCCC-C----------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC--CHHH----
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCC-cc--cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEech--hhhc----
Confidence 5788899999999999998544321 11 11110000012233 33333332 47888885322 1110
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHH
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALD 281 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD 281 (432)
..++...+-|..|++||||+|-+-.+-| ..+.+|.++++
T Consensus 175 ------------~gldeAi~Ra~ay~eAGAD~ifi~~~~~~~~~~~i~~~~~ 214 (307)
T 3lye_A 175 ------------LGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAALA 214 (307)
T ss_dssp ------------HCHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHHT
T ss_pred ------------cCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHcc
Confidence 1245555667889999999999887766 57777777774
No 113
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=70.85 E-value=20 Score=26.92 Aligned_cols=64 Identities=28% Similarity=0.302 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|++++= |.+.-+++++.+++...+|+....-+.+......+.+.|..+
T Consensus 31 ~~~~~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 97 (120)
T 2a9o_A 31 AFNGREALEQFEA---EQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADD 97 (120)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHHHHTCSE
T ss_pred ecCHHHHHHHHHh---CCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHHhCCHhh
Confidence 4577888876542 457999886 555668899999987789999887766666666666666544
No 114
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=70.43 E-value=58 Score=28.93 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH-------
Q 014017 202 TIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG------- 274 (432)
Q Consensus 202 aIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~------- 274 (432)
..+.|++..|+..++. .-.||. ...+ ++..+.......+.+.+-.+.++|+|.|.-..--+-=+.
T Consensus 26 ~~~~~~~~~p~~~i~~--~~~p~g---~~~~---~~~~~~~~~~~~l~~~~~~l~~~g~d~iviaCnta~~~~~l~~~~~ 97 (228)
T 2eq5_A 26 HGRIIESAFPELKVVS--RCIEDQ---PKGI---YNEETEREAEPKIIRLAKEFEREGVDAIIISCAADPAVEKVRKLLS 97 (228)
T ss_dssp HHHHHHHHCTTEEEEE--EECSSC---TTCC---SSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSTTCTTHHHHHHHCS
T ss_pred HHHHHHhhCCCCeEEE--EeCCCC---chhc---cccccHHHhHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHhCC
Confidence 4567888899988777 333552 2111 122223334456777777778899999876654442222
Q ss_pred ---------HHHHHHHHCCCccceeecchhhhccccchhhhhhh----h---CCCCCCCcccccccccCCCCCHHHHHHH
Q 014017 275 ---------AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREAL----D---SNPRFGDKKTYVIRVIELYANYREALVE 338 (432)
Q Consensus 275 ---------aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa----~---Sap~~gDRktYQmd~~~~p~N~~EAlre 338 (432)
+++.++ ..| .+++|++=...-.+ . |++.+ + ..+.+.+ -.+++ -...++.+++
T Consensus 98 iPvi~i~~~~~~~a~-~~~-~rigVlat~~t~~~-~---~~~~~~~~~g~~~~~~~~~~--v~~~~----~~~~~~~l~~ 165 (228)
T 2eq5_A 98 IPVIGAGSSVSALAL-AYG-RRVGVLNLTEETPK-V---IRSILGNNLIAEDHPSGVSN--TLDLL----TDWGRREVIN 165 (228)
T ss_dssp SCEEEHHHHHHHHHH-TTC-SSEEEECSSSCCCH-H---HHHHHGGGEEEEECCTTCCS--GGGGG----SHHHHHHHHH
T ss_pred CCEeCccHHHHHHHH-HhC-CeEEEEecCcccHH-H---HHHHHHHHhCccccCCceee--HHHhc----ChHHHHHHHH
Confidence 333343 345 68888876444333 2 33333 1 1122221 11222 1113566666
Q ss_pred HHhch-hcCCcEEEEcCCCchh--HHHHHHHhhCCCCeE
Q 014017 339 AQADE-SEGADILLVKPGLPYL--DVIRLLRDKYPLPIA 374 (432)
Q Consensus 339 ~~~Di-~EGAD~lMVKPal~YL--DII~~vk~~~~lPva 374 (432)
....+ ++|+|.|+. =-..|- .+...+++.+++||.
T Consensus 166 ~~~~l~~~~~d~IvL-gCT~~~t~~~~~~i~~~~~vpvi 203 (228)
T 2eq5_A 166 AAKRLKEKGVEVIAL-GCTGMSTIGIAPVLEEEVGIPVI 203 (228)
T ss_dssp HHHHHHHTTCSEEEE-CCTHHHHHTCHHHHHHHHSSCEE
T ss_pred HHHHHHHcCCCEEEE-CCCCcchHHHHHHHHHHcCCCEE
Confidence 66665 469999988 344565 788888877788873
No 115
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=70.30 E-value=32 Score=26.74 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHhch-------hcCCcEEEEc---CCCchhHHHHHHHhhC---CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADE-------SEGADILLVK---PGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di-------~EGAD~lMVK---Pal~YLDII~~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+......- ++..|+|++= |.+.-+++++.+++.. .+|+..+.-+.+-..+..+.+.|..+
T Consensus 38 ~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~ 117 (149)
T 1k66_A 38 CITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISS 117 (149)
T ss_dssp ECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred ECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCE
Confidence 457788887765421 1567999886 6667789999999864 69999987776666666666666544
No 116
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=70.20 E-value=36 Score=26.48 Aligned_cols=65 Identities=9% Similarity=-0.060 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~ 396 (432)
..|..||+.... ++.-|+|++= |++.-+++++.+++.. .+|+....-.++......+.+.|..+.
T Consensus 33 ~~~~~~al~~~~---~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~ 101 (132)
T 3crn_A 33 AATAGEGLAKIE---NEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYASLENSVFSLNAGADAY 101 (132)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred eCCHHHHHHHHh---cCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccccHHHHHHHHhccchhh
Confidence 567788887665 3468999886 6667789999999865 689998877777777777777776553
No 117
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=70.18 E-value=37 Score=26.53 Aligned_cols=66 Identities=12% Similarity=0.187 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... -++..|+|++- |.+.-+++++.+++.. .+|+....-..+...+..+.+.|..+
T Consensus 33 ~~~~~~a~~~~~~-~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 102 (143)
T 3jte_A 33 ASSSTEGLRIFTE-NCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFE 102 (143)
T ss_dssp ESSHHHHHHHHHH-TTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHHh-CCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcce
Confidence 4577788766542 24578999987 5666789999999876 59999987777777777777777643
No 118
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=70.04 E-value=5.2 Score=37.82 Aligned_cols=119 Identities=17% Similarity=0.202 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCCCeecCCCCCC----c--------------------------hHHHHHHHHHHCCCccceeecchhhh
Q 014017 248 LCKQAVSQARAGADVVSPSDMMD----G--------------------------RVGAIRAALDAEGFQHVSIMSYTAKY 297 (432)
Q Consensus 248 Lak~Avs~A~AGADiVAPSDMMD----G--------------------------rV~aIR~aLD~~Gf~~v~ImSYSaKy 297 (432)
|.+.+..+.++|+|+|.-..--+ | -+.++-++|...|.++++|++=..+-
T Consensus 79 l~~aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~~~A~~~al~~~g~~rvgvltp~~~~ 158 (273)
T 2xed_A 79 RERCVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSSAGALVEGLRALDAQRVALVTPYMRP 158 (273)
T ss_dssp HHHHHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEHHHHHHHHHHHTTCCEEEEEECSCHH
T ss_pred HHHHHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecHHHHHHHHHHHcCCCeEEEEcCChhh
Confidence 45666777788888887665332 2 13555566666787889999633322
Q ss_pred ccccchhhhhhhhCCCC----CCC---cccccccccCCCCCHHHHHHHHHhchh-cCCcEEEEc--CCCchhHHHHHHHh
Q 014017 298 ASSFYGPFREALDSNPR----FGD---KKTYVIRVIELYANYREALVEAQADES-EGADILLVK--PGLPYLDVIRLLRD 367 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~----~gD---RktYQmd~~~~p~N~~EAlre~~~Di~-EGAD~lMVK--Pal~YLDII~~vk~ 367 (432)
-+.+|--|-++.+-... ++- -+--+.+ .+.+.++.+... +|||.|+.= =.++.++++..+.+
T Consensus 159 ~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~--------~~~l~~~~~~l~~~gadaIvLg~CT~l~~~~~~~~le~ 230 (273)
T 2xed_A 159 LAEKVVAYLEAEGFTISDWRALEVADNTEVGCIP--------GEQVMAAARSLDLSEVDALVISCAVQMPSLPLVETAER 230 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCC--------HHHHHHHHHHSCCTTCSEEEEESSSSSCCTTHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEeccccCCCccchhhcccC--------HHHHHHHHHHHhhCCCCEEEEcCCCCcchHHhHHHHHH
Confidence 23355444443321110 110 0011222 344555554443 699998876 35667789999998
Q ss_pred hCCCCeE
Q 014017 368 KYPLPIA 374 (432)
Q Consensus 368 ~~~lPva 374 (432)
.+++||.
T Consensus 231 ~lg~PVi 237 (273)
T 2xed_A 231 EFGIPVL 237 (273)
T ss_dssp HHSSCEE
T ss_pred HhCCCEE
Confidence 8899984
No 119
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=69.72 E-value=12 Score=37.35 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC-----------CCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV-----------PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi-----------~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
+..+-.+.+.+.|...|-|-+-= .+.-.|+.|-.--|.--++.+.|+++|+.+++--|..-+....+.
T Consensus 154 ~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~- 232 (362)
T 4ab4_A 154 AYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADA- 232 (362)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCS-
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccc-
Confidence 34555666889999999996531 233456666544444446678899999998632555555433321
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
.|+- ...+++...+.|-.+.++|+|.|.-|.-..|. .|..-+|
T Consensus 233 ---~g~~-------~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~---------------------------~~~~~ik 275 (362)
T 4ab4_A 233 ---HDMG-------DADRAETFTYVARELGKRGIAFICSREREADD---------------------------SIGPLIK 275 (362)
T ss_dssp ---SSCC-------CTTHHHHHHHHHHHHHHTTCSEEEEECCCCTT---------------------------CCHHHHH
T ss_pred ---cccC-------CCCcHHHHHHHHHHHHHhCCCEEEECCCCCCH---------------------------HHHHHHH
Confidence 1211 11234445556666788999999866543221 2344556
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCCeEEEEechhhHH
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSM 384 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lPvaaYqVSGEYaM 384 (432)
+++. -|-.+.- .+ + | .+ ++.-+++| ||+||+ .|.+.-=|+.+++++. .|+..|.-+-=|.-
T Consensus 276 ~~~~-iPvi~~G-gi--t----~---e~----a~~~l~~g~aD~V~iGR~~lanPdl~~k~~~g--~~l~~~d~~~~y~~ 338 (362)
T 4ab4_A 276 EAFG-GPYIVNE-RF--D----K---AS----ANAALASGKADAVAFGVPFIANPDLPARLAAD--APLNEAHPETFYGK 338 (362)
T ss_dssp HHHC-SCEEEES-SC--C----H---HH----HHHHHHTTSCSEEEESHHHHHCTTHHHHHHTT--CCCCCCCGGGSSSS
T ss_pred HHCC-CCEEEeC-CC--C----H---HH----HHHHHHcCCccEEEECHHhHhCcHHHHHHHcC--CCCCCCChhhccCC
Confidence 6653 2332110 01 3 2 22 22334566 999987 4555556899998875 56666665554532
Q ss_pred HHHHHHCCCchh
Q 014017 385 IKAGGALKMIDE 396 (432)
Q Consensus 385 ikaAa~~G~id~ 396 (432)
...|++|.
T Consensus 339 ----~~~gy~dy 346 (362)
T 4ab4_A 339 ----GPVGYIDY 346 (362)
T ss_dssp ----SSTTTTCS
T ss_pred ----CCCCcccc
Confidence 24688874
No 120
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=69.68 E-value=25 Score=27.65 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCc---hhHHHHHHHh--h-CCCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLP---YLDVIRLLRD--K-YPLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~---YLDII~~vk~--~-~~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+..... ..-|+|++--.++ -+++++.+|+ . ..+|+....-..+-..+..+.+.|..
T Consensus 37 ~~~~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~ 105 (144)
T 3kht_A 37 VDNGAKALYQVQQ---AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGAS 105 (144)
T ss_dssp ESSHHHHHHHHTT---CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCS
T ss_pred ECCHHHHHHHhhc---CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 5577888877643 4589999975554 5788999997 3 36999988766555555556666643
No 121
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=69.65 E-value=40 Score=31.69 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.9
Q ss_pred HHHCCCchh---hHHHHHHHHHHHHcCccEee
Q 014017 388 GGALKMIDE---QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 388 Aa~~G~id~---~~~~~EsL~~ikRAGAd~Ii 416 (432)
..++|+++. ++.+.|.+..+++.|+|.||
T Consensus 154 ~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IV 185 (276)
T 2dwu_A 154 VVENRLEDTAYVTQQVKQALLPLTKEDIDTLI 185 (276)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEE
T ss_pred HHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 346788763 36788888889999999998
No 122
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=69.57 E-value=13 Score=35.55 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=46.6
Q ss_pred HHHHHHHhchhcCCcEEEEc------CCCch-------hHHHHHHHhhC---------CCCeEEEEechhhHHHHHHHHC
Q 014017 334 EALVEAQADESEGADILLVK------PGLPY-------LDVIRLLRDKY---------PLPIAAYQVSGEYSMIKAGGAL 391 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVK------Pal~Y-------LDII~~vk~~~---------~lPvaaYqVSGEYaMikaAa~~ 391 (432)
+.+.++..-+.+|+|.|-+= ++..+ .+||+.+|+.. ++||.. .+|++
T Consensus 153 ~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~v-Ki~~~---------- 221 (336)
T 1f76_A 153 DDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAV-KIAPD---------- 221 (336)
T ss_dssp HHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEE-ECCSC----------
T ss_pred HHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEE-EecCC----------
Confidence 44445554455799998663 22222 48999999877 899987 56654
Q ss_pred CCchhhHHHHHHHHHHHHcCccEee
Q 014017 392 KMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 392 G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
| +.+ -+.|....+..+|+|.|+
T Consensus 222 -~-~~~-~~~~~a~~l~~~Gvd~i~ 243 (336)
T 1f76_A 222 -L-SEE-ELIQVADSLVRHNIDGVI 243 (336)
T ss_dssp -C-CHH-HHHHHHHHHHHTTCSEEE
T ss_pred -C-CHH-HHHHHHHHHHHcCCcEEE
Confidence 3 333 246777788899999886
No 123
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=69.22 E-value=41 Score=32.30 Aligned_cols=117 Identities=21% Similarity=0.209 Sum_probs=72.9
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH----CCCeEEEeeeccc
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR----YPDLVIYTDVALD 222 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~----fPdl~IitDVcLc 222 (432)
||.=|--+.. ++.+.++++.+.|+..|.|=+.+.+ .|..-. +-.-...-|+.+++. -++..|++=. |
T Consensus 83 ~d~Gyg~~~~-~~~~~v~~l~~aGaagv~iED~~~~-----~~k~l~-~~~e~~~~I~aa~~a~~~~g~~~~i~aRt--d 153 (275)
T 2ze3_A 83 IEAGYGHAPE-DVRRTVEHFAALGVAGVNLEDATGL-----TPTELY-DLDSQLRRIEAARAAIDASGVPVFLNART--D 153 (275)
T ss_dssp CTTCSSSSHH-HHHHHHHHHHHTTCSEEEEECBCSS-----SSSCBC-CHHHHHHHHHHHHHHHHHHTSCCEEEEEC--C
T ss_pred cCCCCCCCHH-HHHHHHHHHHHcCCcEEEECCCcCC-----CCCccC-CHHHHHHHHHHHHHhHhhcCCCeEEEEec--h
Confidence 4433544453 5899999999999999999544211 111111 112234567777766 5667776522 2
Q ss_pred CCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHHH
Q 014017 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAALD 281 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aLD 281 (432)
.|. .| . |.= ..+.++.+.+-|..|++||||+|-+-.+-| -.+..|.++|+
T Consensus 154 a~~-~~---~----g~~-~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~~ 204 (275)
T 2ze3_A 154 TFL-KG---H----GAT-DEERLAETVRRGQAYADAGADGIFVPLALQSQDIRALADALR 204 (275)
T ss_dssp TTT-TT---C----SSS-HHHHHHHHHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHCS
T ss_pred hhh-cc---c----ccc-chhhHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhcC
Confidence 221 11 0 100 124688889999999999999998888766 66777777763
No 124
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=69.17 E-value=8.6 Score=37.18 Aligned_cols=107 Identities=12% Similarity=0.170 Sum_probs=70.4
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-+ .++.|+ --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 26 ~dg~iD~~-~l~~lv---~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-grvpViaGv------------ 88 (314)
T 3d0c_A 26 GTREIDWK-GLDDNV---EFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVN-GRATVVAGI------------ 88 (314)
T ss_dssp TTCCBCHH-HHHHHH---HHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEEE------------
T ss_pred CCCCCCHH-HHHHHH---HHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhC-CCCeEEecC------------
Confidence 45777744 344443 3456789999887652 2246777777776654 366766532
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 379 (432)
| - |.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+..++||..|+.+
T Consensus 89 ---------g------------~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~t 146 (314)
T 3d0c_A 89 ---------G------------Y-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYFKD 146 (314)
T ss_dssp ---------C------------S-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEECC
T ss_pred ---------C------------c-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 1 3 4567777776666779999999664322 344456778889999999976
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
|
T Consensus 147 g 147 (314)
T 3d0c_A 147 A 147 (314)
T ss_dssp T
T ss_pred C
Confidence 6
No 125
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=68.71 E-value=85 Score=35.84 Aligned_cols=195 Identities=16% Similarity=0.169 Sum_probs=98.8
Q ss_pred eEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHc--CCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 014017 132 PLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDV--GVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (432)
Q Consensus 132 PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~--GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~ 209 (432)
.|.|.|..= +.=.+-+|..|++.+ +.++.++.+.++ |+.++-..|- ..-+. ...|-..++. ..++.+++.
T Consensus 550 ~v~i~DtTL-RDG~Qs~~~~~~~~~-dkl~ia~~L~~~gv~~~~iE~~gg---a~f~~--~~~f~~~~p~-e~l~~~~~~ 621 (1165)
T 2qf7_A 550 RVLLTDTTM-RDGHQSLLATRMRTY-DIARIAGTYSHALPNLLSLECWGG---ATFDV--SMRFLTEDPW-ERLALIREG 621 (1165)
T ss_dssp SCEEEECTT-THHHHHHHTTCCCHH-HHHHHHHHHHHHCTTCSEEEEEET---THHHH--HHHHHCCCHH-HHHHHHHHH
T ss_pred ceEEEeccc-ccccccCCcccCCHH-HHHHHHHHHHHhCCCceEEEeCCC---CccHH--HHhhcCCCHH-HHHHHHHHH
Confidence 467777431 111234566677775 689999999999 4556666321 00000 0001122332 478889999
Q ss_pred CCCeEEE--ee-ecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC---CCchHHHHHHHHHHC
Q 014017 210 YPDLVIY--TD-VALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM---MDGRVGAIRAALDAE 283 (432)
Q Consensus 210 fPdl~Ii--tD-VcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM---MDGrV~aIR~aLD~~ 283 (432)
.|+..+. +- ..++.||.. . |..++.-.+.| +++|+|++.-.+- ++ .+....+...+.
T Consensus 622 ~~~~~~~~l~R~~n~vg~~~~-----------~--~~~~~~~i~~a---~~~g~d~irif~sl~~~~-~~~~~i~~~~~~ 684 (1165)
T 2qf7_A 622 APNLLLQMLLRGANGVGYTNY-----------P--DNVVKYFVRQA---AKGGIDLFRVFDCLNWVE-NMRVSMDAIAEE 684 (1165)
T ss_dssp CTTSEEEEEEETTTBTCSSCC-----------C--HHHHHHHHHHH---HHHTCCEEEEECTTCCGG-GGHHHHHHHHHT
T ss_pred chhhHHHHHhccccccccccC-----------C--chhHHHHHHHH---HhcCcCEEEEEeeHHHHH-HHHHHHHHHHhc
Confidence 9985442 11 123445321 1 11222233333 3469998543221 23 333444444466
Q ss_pred CCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-------CCC
Q 014017 284 GFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-------PGL 356 (432)
Q Consensus 284 Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-------Pal 356 (432)
|. .| .++.-|...|..|||... | + +..+.-+..=++-|||.|-+| |.
T Consensus 685 g~-~v---~~~i~~~~~~~d~~r~~~--------------~----~---~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~- 738 (1165)
T 2qf7_A 685 NK-LC---EAAICYTGDILNSARPKY--------------D----L---KYYTNLAVELEKAGAHIIAVKDMAGLLKPA- 738 (1165)
T ss_dssp TC-EE---EEEEECCSCTTCTTSGGG--------------C----H---HHHHHHHHHHHHTTCSEEEEEETTCCCCHH-
T ss_pred cc-eE---EEEEEEeccccCCCCCCC--------------C----H---HHHHHHHHHHHHcCCCEEEEeCccCCcCHH-
Confidence 74 22 222223334445554211 1 1 222222222245699999777 44
Q ss_pred chhHHHHHHHhhCCCCeEEEEe
Q 014017 357 PYLDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 357 ~YLDII~~vk~~~~lPvaaYqV 378 (432)
.+-++|+.+|+++++|+. +|-
T Consensus 739 ~~~~lv~~l~~~~~~~i~-~H~ 759 (1165)
T 2qf7_A 739 AAKVLFKALREATGLPIH-FHT 759 (1165)
T ss_dssp HHHHHHHHHHHHCSSCEE-EEE
T ss_pred HHHHHHHHHHHhcCCeEE-EEE
Confidence 236899999999999884 455
No 126
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=68.57 E-value=43 Score=26.63 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHhc------hhcCCcEEEEc---CCCchhHHHHHHHh--hC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQAD------ESEGADILLVK---PGLPYLDVIRLLRD--KY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~D------i~EGAD~lMVK---Pal~YLDII~~vk~--~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+...... .++..|+|++= |++.=+++++.+|+ .. .+|+....-+.+-..+..+.+.|..+
T Consensus 36 ~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~ 114 (152)
T 3heb_A 36 FTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANV 114 (152)
T ss_dssp ESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcE
Confidence 45778888776522 24568999886 67777999999998 43 69999987776666666667777644
No 127
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=68.51 E-value=8.4 Score=39.08 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=39.6
Q ss_pred hhcCCcEEEE--cCCC--chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 343 ESEGADILLV--KPGL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 343 i~EGAD~lMV--KPal--~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+++|+|+|.+ -.+. .++|+|+.+|+.+++||.+=+|+ + .|....+.++|||+|+.
T Consensus 153 veaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~---------------t-----~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 153 VEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVV---------------T-----EEATKELIENGADGIKV 211 (400)
T ss_dssp HHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEEC---------------S-----HHHHHHHHHTTCSEEEE
T ss_pred HHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecC---------------C-----HHHHHHHHHcCCCEEEE
Confidence 5789999987 4443 35899999999999999875552 2 12224455789998876
No 128
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=68.27 E-value=25 Score=27.29 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+..... +..|+|++- |.+.-+++++.+++.. .+|+..+.-..+-.....+.+.|..
T Consensus 37 ~~~~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~ 103 (137)
T 3hdg_A 37 AGDGEEGERLFGL---HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVH 103 (137)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCS
T ss_pred ECCHHHHHHHHhc---cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcc
Confidence 4578888877653 468999998 5556689999999876 5888877555554455555555543
No 129
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=68.23 E-value=9.4 Score=35.88 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc-----------------------------CCC---------chhHHHHHHHhhCC
Q 014017 329 YANYREALVEAQADESEGADILLVK-----------------------------PGL---------PYLDVIRLLRDKYP 370 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK-----------------------------Pal---------~YLDII~~vk~~~~ 370 (432)
..|..|+++. .+.|||+|.++ |.. .-++.|+++++..+
T Consensus 132 v~~~~~~~~a----~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~ 207 (297)
T 2zbt_A 132 ARNLGEALRR----IAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGR 207 (297)
T ss_dssp ESSHHHHHHH----HHTTCSEEEECCCSSSCCTHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSS
T ss_pred cCCHHHHHHH----HHcCCCEEEEcccccCcchHHHHhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcC
Confidence 4577776653 57899999877 332 23688899998888
Q ss_pred CCeEEEEechhhHHHHHHHHCCCc-hhhHHHHHHHHHHHHcCccEee
Q 014017 371 LPIAAYQVSGEYSMIKAGGALKMI-DEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 371 lPvaaYqVSGEYaMikaAa~~G~i-d~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+|+.- .++ |-| +. |.+..+..+|||.++
T Consensus 208 ~pvi~-~a~------------GGI~~~-----e~i~~~~~aGadgvv 236 (297)
T 2zbt_A 208 LPVVN-FAA------------GGIATP-----ADAALMMHLGMDGVF 236 (297)
T ss_dssp CSSCE-EBC------------SSCCSH-----HHHHHHHHTTCSEEE
T ss_pred CCcEE-Eee------------CCCCCH-----HHHHHHHHcCCCEEE
Confidence 88752 133 333 33 445566778888765
No 130
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=68.22 E-value=19 Score=28.42 Aligned_cols=64 Identities=27% Similarity=0.290 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|+|++= |++.-+++++.+|+. ..+|+....-.++......+.+.|..|
T Consensus 34 ~~~~~~al~~~~---~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~ 103 (136)
T 3t6k_A 34 AASGEEALQQIY---KNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGAND 103 (136)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTTCHHHHHHHHHHTCSE
T ss_pred eCCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCCCHHHHHHHHhcCcce
Confidence 457788887664 3568999886 666678999999974 369999988888888777777777654
No 131
>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*
Probab=67.80 E-value=9 Score=35.74 Aligned_cols=90 Identities=16% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCc-------hhHHHHHHHhhC-CCCe-EEEEech----------hh-HHHHHHH
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLP-------YLDVIRLLRDKY-PLPI-AAYQVSG----------EY-SMIKAGG 389 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~-------YLDII~~vk~~~-~lPv-aaYqVSG----------EY-aMikaAa 389 (432)
.+.+|++.++..=.+.|||+|=..=... -.+.++.+|+.. ++|+ +.|--.. || ..++.+.
T Consensus 14 ~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 93 (238)
T 1sfl_A 14 LSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLA 93 (238)
T ss_dssp C---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 5777888887776677999986654321 134455666666 6898 4443221 23 5778888
Q ss_pred HCC---Cch-------hhHHHHHHHHHHHHcCccEeehhc
Q 014017 390 ALK---MID-------EQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 390 ~~G---~id-------~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+.| ++| .++.+.+.....++.|..+|++|+
T Consensus 94 ~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~H 133 (238)
T 1sfl_A 94 NINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133 (238)
T ss_dssp GCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEec
Confidence 775 555 333445555666777999999997
No 132
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=67.75 E-value=35 Score=27.44 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+.... ++..|+|++- |++.-+++++.+|+. ..+|+....-..+-..+..+.+.|..
T Consensus 37 ~~~~~~al~~l~---~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 105 (154)
T 3gt7_A 37 VRNGREAVRFLS---LTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGAD 105 (154)
T ss_dssp ESSHHHHHHHHT---TCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCS
T ss_pred eCCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCC
Confidence 457788887664 3458999997 666678999999986 46999988766666666666666653
No 133
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=67.68 E-value=27 Score=27.22 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHhch---hcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADE---SEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di---~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+....... .+..|+|++= |.+.-+++++.+++. ..+|+..+.-+.+......+.+.|..+
T Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 114 (143)
T 2qvg_A 39 AKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRG 114 (143)
T ss_dssp ESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCE
T ss_pred ECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCe
Confidence 457788887665322 1457999986 666778999999986 469999987766655555555555543
No 134
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=67.42 E-value=12 Score=33.94 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=36.9
Q ss_pred CCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-------CCCchhHHHHHHHhhCCCCeEE
Q 014017 316 GDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-------PGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 316 gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~YLDII~~vk~~~~lPvaa 375 (432)
|+++.|+.. ..+..|..++.+ +.|||+|-+= -....++.+++++ .+++|+.+
T Consensus 20 G~~~~~~~~----~~~~~~~a~~~~---~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~ipvi~ 78 (241)
T 1qo2_A 20 GRKENTIFY----EKDPVELVEKLI---EEGFTLIHVVDLSNAIENSGENLPVLEKLS-EFAEHIQI 78 (241)
T ss_dssp GCGGGEEEE----SSCHHHHHHHHH---HTTCCCEEEEEHHHHHHCCCTTHHHHHHGG-GGGGGEEE
T ss_pred cccccceec----CcCHHHHHHHHH---HcCCCEEEEecccccccCCchhHHHHHHHH-hcCCcEEE
Confidence 677777754 556677666554 5899988662 2235689999999 88899765
No 135
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=67.19 E-value=38 Score=29.65 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc-CC-Cc-hhHHHHHHHhhC-CCCeEEEEe--chhhHHHHHHHHCCC-----chh-
Q 014017 329 YANYREALVEAQADESEGADILLVK-PG-LP-YLDVIRLLRDKY-PLPIAAYQV--SGEYSMIKAGGALKM-----IDE- 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK-Pa-l~-YLDII~~vk~~~-~lPvaaYqV--SGEYaMikaAa~~G~-----id~- 396 (432)
..|.++++..+.. ...|+|++|+= |- +. =+++|+.+|+.+ ++|+.+--+ -|....++.+.++|. -++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~diie~G~p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~ 87 (211)
T 3f4w_A 9 ELTLPEAMVFMDK-VVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVT 87 (211)
T ss_dssp SCCHHHHHHHHHH-HGGGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CCCHHHHHHHHHH-hhcCccEEEeCcHHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCC
Confidence 6788888876654 24699999985 32 11 279999999984 899854221 344445777777773 111
Q ss_pred -hHHHHHHHHHHHHcCccEee
Q 014017 397 -QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 397 -~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.+-|.+..+++.|..+++
T Consensus 88 ~~~~~~~~~~~~~~~g~~~~v 108 (211)
T 3f4w_A 88 DVLTIQSCIRAAKEAGKQVVV 108 (211)
T ss_dssp CHHHHHHHHHHHHHHTCEEEE
T ss_pred ChhHHHHHHHHHHHcCCeEEE
Confidence 23445666677777877774
No 136
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=67.10 E-value=11 Score=36.11 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCC--------chhHHHHHHHhhC-CCCeE-EEEe---------chh--hHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGL--------PYLDVIRLLRDKY-PLPIA-AYQV---------SGE--YSMIKA 387 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal--------~YLDII~~vk~~~-~lPva-aYqV---------SGE--YaMika 387 (432)
..+..|++.++..=.+.|||+|=..=.. .-.+.++.+|+.+ ++|+. .|-- |-| ...++.
T Consensus 48 ~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~ 127 (276)
T 3o1n_A 48 GKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRA 127 (276)
T ss_dssp CSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHH
Confidence 4566666665543334899998663321 2346677888887 79954 3432 222 358888
Q ss_pred HHHCC---Cchhh-----HHHHHHHHHHHHcCccEeehhc
Q 014017 388 GGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 388 Aa~~G---~id~~-----~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+.+.| ++|-+ +.+-+.+...++.|..+|++|+
T Consensus 128 ~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~H 167 (276)
T 3o1n_A 128 AVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNH 167 (276)
T ss_dssp HHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEee
Confidence 99888 45543 2333333445899999999998
No 137
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=67.09 E-value=38 Score=26.93 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|+|++= |.+.-+++++.+++.. .+|+....-..+...+..+.+.|..+
T Consensus 52 ~~~~~~al~~l~---~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 119 (150)
T 4e7p_A 52 AKNGQEAIQLLE---KESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDA 119 (150)
T ss_dssp ESSHHHHHHHHT---TSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSE
T ss_pred ECCHHHHHHHhh---ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHCCCcE
Confidence 557888887664 3568999986 5666789999999866 59999887777766777777777654
No 138
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=67.03 E-value=16 Score=37.74 Aligned_cols=211 Identities=17% Similarity=0.185 Sum_probs=114.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
+.|.-.|.- +-..+.++.+.+.|+..|-+|....+ . .-+..+|+.+|+.. +.+..++| |++
T Consensus 91 ~~G~~~~~d-dv~~~~v~~a~~~Gvd~i~if~~~sd-~------------~ni~~~i~~ak~~G--~~v~~~i~---~~~ 151 (464)
T 2nx9_A 91 LLGYRHYAD-DVVDTFVERAVKNGMDVFRVFDAMND-V------------RNMQQALQAVKKMG--AHAQGTLC---YTT 151 (464)
T ss_dssp TTSSSCCCH-HHHHHHHHHHHHTTCCEEEECCTTCC-T------------HHHHHHHHHHHHTT--CEEEEEEE---CCC
T ss_pred ccCcccccc-hhhHHHHHHHHhCCcCEEEEEEecCH-H------------HHHHHHHHHHHHCC--CEEEEEEE---eee
Confidence 445444443 23567899999999999999976432 1 12568899998875 45555553 221
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHHC-CC--ccceeecchh
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDAE-GF--QHVSIMSYTA 295 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aLD~~-Gf--~~v~ImSYSa 295 (432)
. ..- +++.+.+.+-...++|||+|+-.||.=+ .|.++|+.++-. |+ +|+.=|+.+.
T Consensus 152 ~----------~~~---~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~~~i~~H~Hnd~GlAvAN 218 (464)
T 2nx9_A 152 S----------PVH---NLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELHLHCHSTAGLADMT 218 (464)
T ss_dssp C----------TTC---CHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCCSCEEEEECCTTSCHHHH
T ss_pred C----------CCC---CHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHH
Confidence 1 111 4566677777778999999999998752 456666665211 11 4445555555
Q ss_pred hhccccchhhhhhhhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhh
Q 014017 296 KYASSFYGPFREALDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDK 368 (432)
Q Consensus 296 KyASsfYGPFRdAa~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~ 368 (432)
-.+..-.|- +.++++- .+|-| +=|.+ -|.+..+... -|-| ++.-. -+.+.+++..
T Consensus 219 ~laAv~AGa--~~VD~ti~g~ger-tGN~~--------lE~lv~~L~~--~g~~-----tgidl~~L~~is~~v~~~~~~ 280 (464)
T 2nx9_A 219 LLKAIEAGV--DRVDTAISSMSGT-YGHPA--------TESLVATLQG--TGYD-----TGLDIAKLEQIAAYFRDVRKK 280 (464)
T ss_dssp HHHHHHTTC--SEEEEBCGGGCST-TSCCB--------HHHHHHHHTT--STTC-----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CEEEEeccccCCC-CcCHH--------HHHHHHHHHh--cCCC-----cccCHHHHHHHHHHHHHHHhh
Confidence 455444442 2233332 24544 55555 4555555543 2333 22211 1222233333
Q ss_pred C---C-------CCeEEEEech-hhHH-HHHHHHCCCchhhHHHHHHHHHH
Q 014017 369 Y---P-------LPIAAYQVSG-EYSM-IKAGGALKMIDEQRVMMESLMCL 407 (432)
Q Consensus 369 ~---~-------lPvaaYqVSG-EYaM-ikaAa~~G~id~~~~~~EsL~~i 407 (432)
+ . -=+-.+|+.| -|+- ...+.+.|+.|.-.-++|-+...
T Consensus 281 ~~~~~~~~~g~~~~v~~~~~pGg~~snl~~q~~~~g~~~~~~~v~~~~~~v 331 (464)
T 2nx9_A 281 YHAFEGMMKGSDARILVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPRV 331 (464)
T ss_dssp TGGGCCSCCSCCTHHHHHCCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred cccccCCCcCCcCCeEEecCCCchHhHHHHHHHHcCCHhHHHHHHHHHHHH
Confidence 2 1 1122355555 2443 34467888876555555555554
No 139
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=66.78 E-value=1e+02 Score=30.30 Aligned_cols=33 Identities=15% Similarity=0.063 Sum_probs=25.6
Q ss_pred hhcCCcEEEEcCCC------chhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVKPGL------PYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPal------~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+|.|-|=... .-++.++.+|+.+++||.+
T Consensus 260 ~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~ 298 (365)
T 2gou_A 260 NKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIY 298 (365)
T ss_dssp HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEE
T ss_pred HHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEE
Confidence 45799999885431 1268999999999999875
No 140
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=66.75 E-value=12 Score=34.47 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHH
Q 014017 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAA 279 (432)
Q Consensus 201 raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~a 279 (432)
..|+.||+.+|+..|+.|+-| . |+..|+... .+++|||+|.=..... ..+.+.+++
T Consensus 47 ~~v~~l~~~~p~~~iflDlKl------------~-----Dip~t~~~~------~~~~Gad~vtVH~~~g~~~l~~a~~~ 103 (221)
T 3exr_A 47 ELVEVLRSLFPDKIIVADTKC------------A-----DAGGTVAKN------NAVRGADWMTCICSATIPTMKAARKA 103 (221)
T ss_dssp HHHHHHHHHCTTSEEEEEEEE------------C-----SCHHHHHHH------HHTTTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEEe------------e-----ccHHHHHHH------HHHcCCCEEEEeccCCHHHHHHHHHH
Confidence 579999999999999989876 1 456676643 4899999954433322 346667777
Q ss_pred HHHCC
Q 014017 280 LDAEG 284 (432)
Q Consensus 280 LD~~G 284 (432)
+.+.|
T Consensus 104 ~~~~g 108 (221)
T 3exr_A 104 IEDIN 108 (221)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 76655
No 141
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=66.71 E-value=17 Score=27.75 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|++++= |++.-+++++.+++.. .+|+....-+++......+.+.|..+
T Consensus 33 ~~~~~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 100 (124)
T 1srr_A 33 AANGLQALDIVTK---ERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALT 100 (124)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCCC
T ss_pred eCCHHHHHHHHhc---cCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCchHHHHHHHhcChHh
Confidence 5577888877653 457999885 6667789999999865 69999887766666666666666544
No 142
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=66.30 E-value=8.5 Score=37.76 Aligned_cols=98 Identities=22% Similarity=0.395 Sum_probs=61.2
Q ss_pred hhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCch----------hHHHHHHHhhCCCC
Q 014017 309 LDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLPY----------LDVIRLLRDKYPLP 372 (432)
Q Consensus 309 a~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~Y----------LDII~~vk~~~~lP 372 (432)
++-+| +|-|--.|. +.+.|+..++.=+++|||||=|= |+... +-+|+.+++.+++|
T Consensus 16 lNvTPDSFsdgg~~~--------~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vp 87 (314)
T 2vef_A 16 INVTPDSFSDGGQFF--------ALEQALQQARKLIAEGASMLDIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVL 87 (314)
T ss_dssp EECCC---------C--------HHHHHHHHHHHHHHTTCSEEEEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCE
T ss_pred EeCCCCCCCCCCCCC--------CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCce
Confidence 44555 355544443 33789999999999999999874 66443 56788888888999
Q ss_pred eEEEEechhhHHHHHHHHCC--Cchh------hHHHHHHHHHHHHcCccEeehhc
Q 014017 373 IAAYQVSGEYSMIKAGGALK--MIDE------QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G--~id~------~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|..= |=.-..+++|.++| +||. +.-+++ -.++.|+-+|+...
T Consensus 88 iSID--T~~~~Va~aAl~aGa~iINDVsg~~~d~~m~~---v~a~~~~~vvlmh~ 137 (314)
T 2vef_A 88 ISID--TWKSQVAEAALAAGADLVNDITGLMGDEKMPH---VVAEARAQVVIMFN 137 (314)
T ss_dssp EEEE--CSCHHHHHHHHHTTCCEEEETTTTCSCTTHHH---HHHHHTCEEEEECC
T ss_pred EEEe--CCCHHHHHHHHHcCCCEEEECCCCCCChHHHH---HHHHcCCCEEEEec
Confidence 8653 44556778888877 3331 123333 35788999998643
No 143
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=66.12 E-value=42 Score=25.63 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHhch----hcCCcEEEEc---CCCchhHHHHHHHhhC---CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADE----SEGADILLVK---PGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di----~EGAD~lMVK---Pal~YLDII~~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+......- .+-.|+|++= |.+.-+++++.+++.. .+|+..+.-+.+......+.+.|..+
T Consensus 34 ~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 110 (140)
T 1k68_A 34 VRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNC 110 (140)
T ss_dssp ECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred ECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHHHHHHHHhchhh
Confidence 567788887665321 1468999886 5666789999999864 69999987766655555666666543
No 144
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=66.10 E-value=12 Score=33.29 Aligned_cols=54 Identities=28% Similarity=0.451 Sum_probs=36.1
Q ss_pred hhcCCcEEEEcC--------CC--chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCc
Q 014017 343 ESEGADILLVKP--------GL--PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 412 (432)
Q Consensus 343 i~EGAD~lMVKP--------al--~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGA 412 (432)
.+.|||+|++=| +. .-++.++.+++.+++|+.+ .|-|+.+.+ ..+.++||
T Consensus 127 ~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia---------------~GGI~~~nv-----~~~~~~Ga 186 (221)
T 1yad_A 127 EKEDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIA---------------IGGMTPDRL-----RDVKQAGA 186 (221)
T ss_dssp HHTTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEE---------------ESSCCGGGH-----HHHHHTTC
T ss_pred HhCCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEE---------------ECCCCHHHH-----HHHHHcCC
Confidence 357999999833 21 2267888888888899864 566665433 34455899
Q ss_pred cEee
Q 014017 413 DIIL 416 (432)
Q Consensus 413 d~Ii 416 (432)
|.|.
T Consensus 187 ~gv~ 190 (221)
T 1yad_A 187 DGIA 190 (221)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9754
No 145
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=66.02 E-value=12 Score=29.35 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc--CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK--PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK--Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|+|++= |.+.-+++++.+++.+ .+|+..+.-..+...+..+.+.|..+
T Consensus 34 ~~~~~~a~~~l~~---~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 100 (142)
T 2qxy_A 34 AKNEQEAFTFLRR---EKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVD 100 (142)
T ss_dssp ESSHHHHHHHHTT---SCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHHHTCSC
T ss_pred ECCHHHHHHHHhc---cCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCcce
Confidence 5577888876653 468999986 5556688999999876 59999987777777777777777644
No 146
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=65.97 E-value=54 Score=31.18 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=48.1
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEEEE-cCCCc----------h-------hHHHHHHHhhCCCCeEEE---E
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADILLV-KPGLP----------Y-------LDVIRLLRDKYPLPIAAY---Q 377 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV-KPal~----------Y-------LDII~~vk~~~~lPvaaY---q 377 (432)
..+++- -.|.+. ++.+ ++-|+|.||+ =+... + .++++.+|+ ..+.|-+| .
T Consensus 77 ~~~~~l----~~~~~~-i~~a---~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~-~G~~V~~~l~~~ 147 (302)
T 2ftp_A 77 VTYAAL----APNLKG-FEAA---LESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQ-HQVRVRGYISCV 147 (302)
T ss_dssp SEEEEE----CCSHHH-HHHH---HHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHH-TTCEEEEEEECT
T ss_pred CEEEEE----eCCHHH-HHHH---HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEEE
Confidence 355553 346654 3322 2359999997 33322 1 455555555 45666443 3
Q ss_pred echhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 378 VSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 378 VSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
.+.||. |-.|.+ .+.|....+..+|||.|
T Consensus 148 ~~~e~~--------~~~~~~-~~~~~~~~~~~~G~d~i 176 (302)
T 2ftp_A 148 LGCPYD--------GDVDPR-QVAWVARELQQMGCYEV 176 (302)
T ss_dssp TCBTTT--------BCCCHH-HHHHHHHHHHHTTCSEE
T ss_pred eeCCcC--------CCCCHH-HHHHHHHHHHHcCCCEE
Confidence 566763 456654 67888899999999987
No 147
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=65.96 E-value=16 Score=32.86 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=29.7
Q ss_pred CHHHHHHHHHhchhcCCcEEEEc-------CCCchhHHHHHHHhhCCCCeEE
Q 014017 331 NYREALVEAQADESEGADILLVK-------PGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVK-------Pal~YLDII~~vk~~~~lPvaa 375 (432)
+..|..++. .+.|||+|-+= ....+++.++++++.+++|+.+
T Consensus 32 d~~~~a~~~---~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~ 80 (252)
T 1ka9_F 32 DPVEAARAY---DEAGADELVFLDISATHEERAILLDVVARVAERVFIPLTV 80 (252)
T ss_dssp CHHHHHHHH---HHHTCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEE
T ss_pred CHHHHHHHH---HHcCCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEE
Confidence 345544444 46799987761 1224689999999999999987
No 148
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=65.95 E-value=27 Score=26.52 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|++++= |++.-+++++.+++...+|+....-+++......+.+.|..+
T Consensus 33 ~~~~~~a~~~~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (123)
T 1xhf_A 33 ATDGAEMHQILS---EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADD 99 (123)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSE
T ss_pred eCCHHHHHHHHh---cCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCCChHHHHHHHhcCcce
Confidence 457788887664 3568999876 555668899999988779998877666666666666666543
No 149
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=65.94 E-value=39 Score=31.76 Aligned_cols=175 Identities=15% Similarity=0.066 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++.+.++++.+.|..+|++-+ |.+..+ + ..+.-++. -+|.-|+.. |-.
T Consensus 42 di~~~~~~a~~~~~~av~v~~------------------~~v~~~----~--~~~~~liv--~~~~~~~~~--g~~---- 89 (263)
T 1w8s_A 42 DPEYILRLARDAGFDGVVFQR------------------GIAEKY----Y--DGSVPLIL--KLNGKTTLY--NGE---- 89 (263)
T ss_dssp CHHHHHHHHHHHTCSEEEECH------------------HHHHHH----C--CSSSCEEE--ECEECCTTC--CSS----
T ss_pred hHHHHHHHHHhhCCCEEEECH------------------HHHHHh----h--cCCCcEEE--EEeCCCCcC--CCC----
Confidence 588889999999999988732 122222 1 33322222 233333321 110
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-----------chHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-----------GRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-----------GrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
-++ +.-.-+++|+ +.|||.| +|.. -.+.+++++..+.|. .+-|++|.- |+
T Consensus 90 --~~~-~~~~~ve~Ai---~~Ga~~v---~~~~nig~~~~~~~~~~~~~v~~~~~~~~~-~vIi~~~~~-------G~-- 150 (263)
T 1w8s_A 90 --PVS-VANCSVEEAV---SLGASAV---GYTIYPGSGFEWKMFEELARIKRDAVKFDL-PLVVESFPR-------GG-- 150 (263)
T ss_dssp --CCC-EESSCHHHHH---HTTCSEE---EEEECTTSTTHHHHHHHHHHHHHHHHHHTC-CEEEEECCC-------ST--
T ss_pred --ccc-hHHHHHHHHH---HCCCCEE---EEEEecCCcCHHHHHHHHHHHHHHHHHcCC-eEEEEeeCC-------CC--
Confidence 111 2222334444 6799988 3322 134677777777786 477887641 21
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCC-CeEEEEechhhHHH
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPL-PIAAYQVSGEYSMI 385 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~l-PvaaYqVSGEYaMi 385 (432)
.+++- .+ +.+..++ +..=.+.|||+|=+.-. .=++-++++++..++ ||.+
T Consensus 151 -------~~~~~----~s----~~~i~~a---~~~a~~~GAD~vkt~~~-~~~e~~~~~~~~~~~~pV~a---------- 201 (263)
T 1w8s_A 151 -------KVVNE----TA----PEIVAYA---ARIALELGADAMKIKYT-GDPKTFSWAVKVAGKVPVLM---------- 201 (263)
T ss_dssp -------TCCCT----TC----HHHHHHH---HHHHHHHTCSEEEEECC-SSHHHHHHHHHHTTTSCEEE----------
T ss_pred -------ccccC----CC----HHHHHHH---HHHHHHcCCCEEEEcCC-CCHHHHHHHHHhCCCCeEEE----------
Confidence 12221 13 3222333 23345689999888731 146889999988776 9765
Q ss_pred HHHHHCCCch--hhHHHHHHHHHHHHcCccEeeh
Q 014017 386 KAGGALKMID--EQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 386 kaAa~~G~id--~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.|-+. ..+-++|.+....+|||+.+..
T Consensus 202 -----sGGi~~~~~~~~l~~i~~~~~aGA~Gvsv 230 (263)
T 1w8s_A 202 -----SGGPKTKTEEDFLKQVEGVLEAGALGIAV 230 (263)
T ss_dssp -----ECCSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred -----EeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 33344 3456788888888999998764
No 150
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=65.91 E-value=6.1 Score=34.69 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEE----EEechhhHHHHHHHHCCC--c--
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA----YQVSGEYSMIKAGGALKM--I-- 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaa----YqVSGEYaMikaAa~~G~--i-- 394 (432)
..|.+|++..++ .+.+|+|+ +|.++++ +++|+.+|+.+ ++|+.+ |++ ++. .++.+++.|. +
T Consensus 9 ~~~~~~~~~~~~-~~~~~v~~--iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di-~~~-~~~~a~~~Gad~v~v 83 (207)
T 3ajx_A 9 LLSTEAALELAG-KVAEYVDI--IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDA-GEL-EADIAFKAGADLVTV 83 (207)
T ss_dssp CSCHHHHHHHHH-HHGGGCSE--EEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSC-HHH-HHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHH-HhhccCCE--EEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCc-cHH-HHHHHHhCCCCEEEE
Confidence 557777766554 34559998 6778765 78999999998 789884 432 444 3466666653 1
Q ss_pred -hh--hHHHHHHHHHHHHcCccEee
Q 014017 395 -DE--QRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 395 -d~--~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+ +..+-+.+..+++.|..+-+
T Consensus 84 h~~~~~~~~~~~~~~~~~~g~~~gv 108 (207)
T 3ajx_A 84 LGSADDSTIAGAVKAAQAHNKGVVV 108 (207)
T ss_dssp ETTSCHHHHHHHHHHHHHHTCEEEE
T ss_pred eccCChHHHHHHHHHHHHcCCceEE
Confidence 11 13444555666676777634
No 151
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=65.81 E-value=47 Score=26.47 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHhch----hcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCchh
Q 014017 329 YANYREALVEAQADE----SEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMIDE 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di----~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id~ 396 (432)
..|..||+....... ++..|+|++= |++.=+|+++.+|+. ..+|+....-+++-..+..+.+.|..+.
T Consensus 40 ~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~ 117 (149)
T 1i3c_A 40 LRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCY 117 (149)
T ss_dssp ECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEE
T ss_pred eCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEE
Confidence 567788887765321 1357999886 555668899999985 3689999887777677777778887553
No 152
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=65.59 E-value=40 Score=26.91 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 392 (432)
..|..||+.... +...|+|++- |.+.-+++++.+|+.+ .+|+....-..+...+..+.+.|
T Consensus 44 ~~~~~~a~~~l~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g 108 (153)
T 3hv2_A 44 ARDATQALQLLA---SREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAINEG 108 (153)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHHHTT
T ss_pred ECCHHHHHHHHH---cCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHHhCC
Confidence 567888887765 3468999986 6677799999999876 59999888777777777777777
No 153
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=65.56 E-value=41 Score=25.37 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+++.... ++.-|++++= |++.-+++++.+++...+|+....-+++......+.+.|..|
T Consensus 32 ~~~~~~~~~~~~---~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 98 (122)
T 1zgz_A 32 TASGAGLREIMQ---NQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADD 98 (122)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHTCSE
T ss_pred ecCHHHHHHHHh---cCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCCChhhHHHHHHhCHHH
Confidence 446677765543 2457888875 666678999999986679998887777766666666666544
No 154
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=65.49 E-value=27 Score=27.41 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHhchh--cCCcEEEEc---CCCchhHHHHHHHhh--CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADES--EGADILLVK---PGLPYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~--EGAD~lMVK---Pal~YLDII~~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.....-.. +--|+|++= |++.=+++++.+|+. ...|+....-+++......+.+.|..+
T Consensus 33 ~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 106 (133)
T 2r25_B 33 ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECLESGMNG 106 (133)
T ss_dssp ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHHHTTCSE
T ss_pred ECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHHHcCCCE
Confidence 5577888876654221 457999876 666678999999974 368999988877887777777777654
No 155
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=65.46 E-value=48 Score=26.37 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 392 (432)
..|..||+..... ...|+|++= |.+.-+++++.+++.. .+|+....-..+...+..+.+.|
T Consensus 37 ~~~~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g 101 (154)
T 2rjn_A 37 FTSPLDALEALKG---TSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYADAQATIDAVNRG 101 (154)
T ss_dssp ESCHHHHHHHHTT---SCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGGHHHHHHHHHTT
T ss_pred eCCHHHHHHHHhc---CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHhcc
Confidence 5677888876653 458999986 6667789999999876 69999988888877777777777
No 156
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=65.33 E-value=38 Score=25.45 Aligned_cols=64 Identities=22% Similarity=0.143 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|++++= |.+.-+++++.+++.. .+|+....-.++......+.+.|..|
T Consensus 30 ~~~~~~a~~~~~~---~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 97 (121)
T 2pl1_A 30 AEDAKEADYYLNE---HIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADD 97 (121)
T ss_dssp ESSHHHHHHHHHH---SCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHhc---cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHHHcCccc
Confidence 4577788766542 357999886 5556688999999765 69999988777777767777777644
No 157
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=65.30 E-value=20 Score=28.29 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHh--h-CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRD--K-YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~--~-~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|+|++= |.+.-+++++.+++ . ..+|+..+.-.++...+..+.+.|..+
T Consensus 38 ~~~~~~a~~~l~~---~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 107 (147)
T 2zay_A 38 CGNAIEAVPVAVK---THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFID 107 (147)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSE
T ss_pred eCCHHHHHHHHHc---CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCE
Confidence 5678888877653 368999986 66677899999997 3 369999988777766666666666543
No 158
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}
Probab=64.86 E-value=4.2 Score=38.22 Aligned_cols=45 Identities=31% Similarity=0.510 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCeecC-----CCC-CC--chHHHHHHHHHHCCCccceeec
Q 014017 247 QLCKQAVSQARAGADVVSP-----SDM-MD--GRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 247 ~Lak~Avs~A~AGADiVAP-----SDM-MD--GrV~aIR~aLD~~Gf~~v~ImS 292 (432)
--..||+.-|+|||+.|+| .|. .| ..|..|++.++.+|+ ++-||.
T Consensus 111 fS~~Qa~~Aa~AGa~yISPfvgRi~d~~~dG~~~v~~i~~~~~~~~~-~t~ila 163 (212)
T 3r8r_A 111 FNANQALLAARAGATYVSPFLGRLDDIGHNGLDLISEVKQIFDIHGL-DTQIIA 163 (212)
T ss_dssp CSHHHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTC-CCEEEE
T ss_pred CCHHHHHHHHHcCCeEEEeccchhhhcCCChHHHHHHHHHHHHHcCC-CCEEEE
Confidence 3356999999999999999 111 13 346778888888887 677775
No 159
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=64.49 E-value=11 Score=37.72 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=38.6
Q ss_pred hhcCCcEEEEc----CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 343 ESEGADILLVK----PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 343 i~EGAD~lMVK----Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+++|+|+|.+= +.-.++|.|+.+|+.+ ++||.+-+|. + .|....+.+||||+|..
T Consensus 117 ieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~---------------t-----~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 117 VEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVA---------------T-----AEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEEC---------------S-----HHHHHHHHHHTCSEEEE
T ss_pred HhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeC---------------C-----HHHHHHHHHcCCCEEEE
Confidence 56899999872 1225789999999998 7999886552 1 12233455779998875
No 160
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Probab=64.44 E-value=33 Score=33.27 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=66.8
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcC--cCCCCCHHHHHHHHHHHC--CCeEEEeeeccc
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEA--YNDNGLVPRTIWLLKDRY--PDLVIYTDVALD 222 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A--~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc 222 (432)
||.=|- +.. ++.+.+.++.+.|+..|.|=+.+.+ +|. |... .-+-.-...-|+++++.- |+..|++=.
T Consensus 89 ~d~Gyg-~~~-~~~~~v~~l~~aGa~gv~iED~~~p-Krc--gh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRt--- 160 (287)
T 3b8i_A 89 ADHGYG-NAL-NVMRTVVELERAGIAALTIEDTLLP-AQF--GRKSTDLICVEEGVGKIRAALEARVDPALTIIART--- 160 (287)
T ss_dssp CTTCSS-SHH-HHHHHHHHHHHHTCSEEEEECBCCS-CCT--TTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEE---
T ss_pred CCCCCC-CHH-HHHHHHHHHHHhCCeEEEEcCCCCc-ccc--CCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEec---
Confidence 443354 554 5899999999999999999554321 121 1111 111112356677777763 444444311
Q ss_pred CCCCCCcceeecCCCcccc-HHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 014017 223 PYSSDGHDGIVREDGVIMN-DETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (432)
Q Consensus 223 ~YTshGHcGIl~~~g~IdN-D~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aL 280 (432)
|. ...++.+.+-|..+++||||+|-+-.+-| -.+.+|.++|
T Consensus 161 -----------------daa~~gl~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (287)
T 3b8i_A 161 -----------------NAELIDVDAVIQRTLAYQEAGADGICLVGVRDFAHLEAIAEHL 203 (287)
T ss_dssp -----------------ETTTSCHHHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHTTC
T ss_pred -----------------hhhhcCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhC
Confidence 11 01367788889999999999998877655 5566666655
No 161
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=64.30 E-value=12 Score=35.61 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=69.9
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCccceeecchhhhccccchhhhh
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------M--DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
||.||-+ .++.|+ --+.++|+|-+.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 15 dg~iD~~-~l~~lv---~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg------------ 77 (294)
T 2ehh_A 15 EGEVDYE-ALGNLI---EFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA-GRIKVIAGTG------------ 77 (294)
T ss_dssp TTEECHH-HHHHHH---HHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECC------------
T ss_pred CCCcCHH-HHHHHH---HHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC------------
Confidence 5777743 344443 3456789998877553 2 246777777776654 2566664321
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEech
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 380 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-|
T Consensus 78 ---------------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 136 (294)
T 2ehh_A 78 ---------------------GNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPS 136 (294)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred ---------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 235688888777767789999999664322 3444567778899999999744
No 162
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7
Probab=64.29 E-value=63 Score=31.56 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHH---HHHC--CCeEEEeeecccCCCCCCccee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLL---KDRY--PDLVIYTDVALDPYSSDGHDGI 232 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~i---K~~f--Pdl~IitDVcLc~YTshGHcGI 232 (432)
.+.+.++.+.+.|+..|.|=+.+.+ +| +|...-.+==+....+..| ++.- ||++|++=+- .|.
T Consensus 99 ~v~~~v~~l~~aGaagv~iEDq~~~-k~--cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTD--a~~------- 166 (298)
T 3eoo_A 99 NIARTIRSFIKAGVGAVHLEDQVGQ-KR--CGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTD--AAA------- 166 (298)
T ss_dssp HHHHHHHHHHHTTCSEEEEECBCCC-CC--TTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC--THH-------
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCC-cc--cCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeeh--hhh-------
Confidence 5888899999999999999554322 12 2221111111233334444 4433 7777774321 110
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aL 280 (432)
...++...+-|..|++||||+|-+-.+-| -.+.++.+++
T Consensus 167 ---------~~gldeai~Ra~ay~~AGAD~if~~~~~~~ee~~~~~~~~ 206 (298)
T 3eoo_A 167 ---------AEGIDAAIERAIAYVEAGADMIFPEAMKTLDDYRRFKEAV 206 (298)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHHH
T ss_pred ---------hcCHHHHHHHHHhhHhcCCCEEEeCCCCCHHHHHHHHHHc
Confidence 12355666678899999999998877754 3455566655
No 163
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=64.27 E-value=11 Score=35.82 Aligned_cols=109 Identities=19% Similarity=0.308 Sum_probs=71.8
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-| .++.+.+ -+.++|+|-+.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 14 ~~dg~iD~~-~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg---------- 78 (291)
T 3tak_A 14 LKDGGVDWK-SLEKLVE---WHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVAN-KRIPIIAGTG---------- 78 (291)
T ss_dssp CTTSCBCHH-HHHHHHH---HHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCC----------
Confidence 356788744 3444433 456799998776554 3456666777776654 2566665321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||.-|++
T Consensus 79 -----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 79 -----------------------ANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred -----------------------CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEec
Confidence 125678888777767789999998765332 44455677888999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-+
T Consensus 136 P~ 137 (291)
T 3tak_A 136 PG 137 (291)
T ss_dssp HH
T ss_pred cc
Confidence 33
No 164
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=64.05 E-value=12 Score=35.62 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------M--DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-| .++.+++ -+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 14 ~dg~iD~~-~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg----------- 77 (292)
T 2vc6_A 14 ADDRIDEV-ALHDLVE---WQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTAN-GRVPVIAGAG----------- 77 (292)
T ss_dssp ETTEECHH-HHHHHHH---HHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEECC-----------
T ss_pred CCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC-----------
Confidence 35778744 3444433 456789999887653 2 246666777766654 2566654321
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 379 (432)
-.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-
T Consensus 78 ----------------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (292)
T 2vc6_A 78 ----------------------SNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIP 135 (292)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred ----------------------CccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 225678887777667789999998664322 233346778889999999974
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
|
T Consensus 136 ~ 136 (292)
T 2vc6_A 136 G 136 (292)
T ss_dssp H
T ss_pred c
Confidence 4
No 165
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=63.69 E-value=11 Score=36.06 Aligned_cols=108 Identities=20% Similarity=0.306 Sum_probs=69.5
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------M--DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-| .++.|+ --+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.=.
T Consensus 14 ~dg~iD~~-~l~~lv---~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGv------------ 76 (297)
T 2rfg_A 14 INGQVDEK-ALAGLV---DWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQ-GRVPVIAGA------------ 76 (297)
T ss_dssp ETTEECHH-HHHHHH---HHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCBEEEC------------
T ss_pred CCCCcCHH-HHHHHH---HHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEcc------------
Confidence 35778744 334443 3456789998877653 2 246666777766554 255555331
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 379 (432)
| -.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-
T Consensus 77 ---------g------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (297)
T 2rfg_A 77 ---------G------------SNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIP 135 (297)
T ss_dssp ---------C------------CSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred ---------C------------CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 1 235688887777666779999999764322 344456778889999999974
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
|
T Consensus 136 ~ 136 (297)
T 2rfg_A 136 P 136 (297)
T ss_dssp H
T ss_pred c
Confidence 4
No 166
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=63.64 E-value=22 Score=33.82 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=31.5
Q ss_pred HHHHHHcCCC-eecCCCCCCchHHHHHHHHHHCCCccceeecc
Q 014017 252 AVSQARAGAD-VVSPSDMMDGRVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 252 Avs~A~AGAD-iVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSY 293 (432)
+-..+++|+| ++.| |+....+...++++.++|+..+.+|+-
T Consensus 112 ~~~~~~aG~dGviv~-Dl~~ee~~~~~~~~~~~gl~~i~liap 153 (271)
T 1ujp_A 112 FGLFKQAGATGVILP-DLPPDEDPGLVRLAQEIGLETVFLLAP 153 (271)
T ss_dssp HHHHHHHTCCEEECT-TCCGGGCHHHHHHHHHHTCEEECEECT
T ss_pred HHHHHHcCCCEEEec-CCCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 3446788999 7777 677788999999999999865655544
No 167
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=63.54 E-value=31 Score=26.65 Aligned_cols=64 Identities=14% Similarity=0.200 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcC--------CCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVKP--------GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKP--------al~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|+|++=- .+.-+++++.+++.+ .+|+..+.-..+...+..+.+.|..+
T Consensus 33 ~~~~~~a~~~l~~---~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~ 105 (140)
T 2qr3_A 33 LSSPVSLSTVLRE---ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASD 105 (140)
T ss_dssp ECCHHHHHHHHHH---SCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGGHHHHHHHHHTTCCE
T ss_pred eCCHHHHHHHHHc---CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCCHHHHHHHHHcCchh
Confidence 5677888877653 4589999863 555689999999876 69999998877777777777777644
No 168
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=63.44 E-value=52 Score=26.15 Aligned_cols=61 Identities=15% Similarity=0.078 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHhchhcC-CcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC
Q 014017 329 YANYREALVEAQADESEG-ADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EG-AD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 392 (432)
..|..||+..... .. -|+|++= |.+.-+++++.+|+.. .+|+....-+.+...+..+.+.|
T Consensus 33 ~~~~~~a~~~l~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g 98 (151)
T 3kcn_A 33 CESGPEALACIKK---SDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDLTTAMEAVNEG 98 (151)
T ss_dssp ESSHHHHHHHHHH---SCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHc---CCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCHHHHHHHHHcC
Confidence 5678888876642 23 4999986 6667799999999866 59999988888888888888888
No 169
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=63.24 E-value=26 Score=27.34 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... +..|+|++= |++.=+++++.+++.. .+|+....-..+...+..+.+.|..+
T Consensus 35 ~~~~~~al~~~~~---~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 102 (133)
T 3b2n_A 35 TDNGLDAMKLIEE---YNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAVVNDVDA 102 (133)
T ss_dssp ESCHHHHHHHHHH---HCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHHHTTCSE
T ss_pred cCCHHHHHHHHhh---cCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHHHcCCcE
Confidence 5578888876642 457999986 5556688999999865 59999988777777777777777655
No 170
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=63.24 E-value=7.7 Score=35.01 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=24.5
Q ss_pred hhcCCcEEEE--cCC-----CchhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLV--KPG-----LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMV--KPa-----l~YLDII~~vk~~~~lPvaa 375 (432)
.+.|||.|-| +.+ ...++.|+++++.+++|+.+
T Consensus 40 ~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 79 (253)
T 1thf_D 40 SEIGIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTV 79 (253)
T ss_dssp HHTTCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEE
T ss_pred HHcCCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEE
Confidence 4579998753 222 13589999999999999876
No 171
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=63.08 E-value=7.4 Score=37.06 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH----CCCeEEEeeecccCCCCCCcceeecC
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR----YPDLVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~----fPdl~IitDVcLc~YTshGHcGIl~~ 235 (432)
.+.+.++.+.|+..|.|=+-. +. .|.+-.+. .-...-|+.+++. -+++.|++ |++..-
T Consensus 96 ~~~~~~l~~aGa~gv~iEd~~--~~---~~k~l~~~-~e~~~~I~a~~~a~~~~g~~~~v~a-----------Rtd~~~- 157 (255)
T 2qiw_A 96 ADLIAQILEAGAVGINVEDVV--HS---EGKRVREA-QEHADYIAAARQAADVAGVDVVING-----------RTDAVK- 157 (255)
T ss_dssp HHHHHHHHHTTCCEEEECSEE--GG---GTTEECCH-HHHHHHHHHHHHHHHHHTCCCEEEE-----------EECHHH-
T ss_pred HHHHHHHHHcCCcEEEECCCC--CC---CCCcccCH-HHHHHHHHHHHHHHHhcCCCeEEEE-----------Eechhh-
Confidence 677888888999999883321 00 01111111 1245677777777 56665553 222210
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC-chHHHHHHHH
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-GRVGAIRAAL 280 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-GrV~aIR~aL 280 (432)
.|.-++.+.++.+.+-|..+++||||+|-+-..-+ -.+..|.++|
T Consensus 158 ~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~~~~~~~~~i~~~~ 203 (255)
T 2qiw_A 158 LGADVFEDPMVEAIKRIKLMEQAGARSVYPVGLSTAEQVERLVDAV 203 (255)
T ss_dssp HCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCCCSHHHHHHHHTTC
T ss_pred ccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHhC
Confidence 12223345788999999999999999998877765 5566666555
No 172
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=63.06 E-value=16 Score=35.85 Aligned_cols=97 Identities=19% Similarity=0.266 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
...+.++.+.+.|...|-|.+- =| +.-.|+.|..--|.--++.+.|+++|+..+ |..|..-+..+.|.
T Consensus 159 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~ 238 (363)
T 3l5l_A 159 DFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYD 238 (363)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcC
Confidence 4666677788999999999752 02 233566665433333356778999999986 77777777766552
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
. +| +.|++...+.|-.+.++|+|.|--|.
T Consensus 239 ~---------~G----~~~~~~~~~la~~L~~~Gvd~i~vs~ 267 (363)
T 3l5l_A 239 G---------RD----EQTLEESIELARRFKAGGLDLLSVSV 267 (363)
T ss_dssp S---------CH----HHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred C---------CC----CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 2 12 14556666677778899999998664
No 173
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=62.81 E-value=25 Score=33.22 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCC--------chhHHHHHHHhhC-CCCeE-EEEe---------chh-h-HHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGL--------PYLDVIRLLRDKY-PLPIA-AYQV---------SGE-Y-SMIKA 387 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal--------~YLDII~~vk~~~-~lPva-aYqV---------SGE-Y-aMika 387 (432)
..+.+|.+.++..=.+.|||+|=+-=.+ .-.+.+..+|+.. ++|+. .|-- |-| | ..++.
T Consensus 28 ~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~ 107 (258)
T 4h3d_A 28 GKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKE 107 (258)
T ss_dssp CSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHH
Confidence 5688899999888778999998665431 1134567777766 68875 4433 222 3 45677
Q ss_pred HHHCC---Cchhh-----HHHHHHHHHHHHcCccEeehhc
Q 014017 388 GGALK---MIDEQ-----RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 388 Aa~~G---~id~~-----~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+++.| |+|.+ +.+-+.+...++.|..+|++|+
T Consensus 108 ~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~H 147 (258)
T 4h3d_A 108 ISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNH 147 (258)
T ss_dssp HHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEe
Confidence 88877 44433 3444444456788999999997
No 174
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=62.64 E-value=3.6 Score=36.85 Aligned_cols=70 Identities=27% Similarity=0.262 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 403 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~Es 403 (432)
+.|.+|+++.++ +-|+|++.+|+...+ .++|+.+|+.++.++.. +..+-|--..+...
T Consensus 8 ~~~l~~~~~~~~---~~~~~~~~~kv~~~~f~~~G~~~i~~lr~~~~~~v~~--------------D~kl~DI~~t~~~~ 70 (208)
T 2czd_A 8 VYEGERAIKIAK---SVKDYISMIKVNWPLILGSGVDIIRRLKEETGVEIIA--------------DLKLADIPNTNRLI 70 (208)
T ss_dssp CCSHHHHHHHHH---HHGGGCSEEEEEHHHHHHHCTTHHHHHHHHHCCEEEE--------------EEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHH---HhcccccEEEecHHHHHhhCHHHHHHHHHcCCCEEEE--------------EeeeCchHHHHHHH
Confidence 778888887765 237899999999765 57888998874444331 11112222233445
Q ss_pred HHHHHHcCccEe
Q 014017 404 LMCLRRAGADII 415 (432)
Q Consensus 404 L~~ikRAGAd~I 415 (432)
...+.++|||+|
T Consensus 71 v~~~~~~Gad~v 82 (208)
T 2czd_A 71 ARKVFGAGADYV 82 (208)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHhcCCCEE
Confidence 566778888887
No 175
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=62.61 E-value=16 Score=33.24 Aligned_cols=40 Identities=33% Similarity=0.419 Sum_probs=28.8
Q ss_pred HHHHHHHHhchhcCCcEEEE--c-----CCCchhHHHHHHHhhCCCCeEE
Q 014017 333 REALVEAQADESEGADILLV--K-----PGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMV--K-----Pal~YLDII~~vk~~~~lPvaa 375 (432)
.|..++.+ +.|+|.|.+ + .....+++|+++++.+++|+.+
T Consensus 38 ~~~a~~~~---~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 84 (247)
T 3tdn_A 38 RDWVVEVE---KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 84 (247)
T ss_dssp HHHHHHHH---HTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHH---HcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEE
Confidence 45444443 579999976 1 2234689999999999999965
No 176
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=62.45 E-value=42 Score=29.45 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
...+.++.+.+.|...|.++++-+ +..+ .|+-...++.+++.. ++-|++ +|
T Consensus 155 ~~~e~~~~~~~~G~d~i~~~~~~~----~g~~------~~~~~~~i~~l~~~~-~~pvia------------------~G 205 (253)
T 1h5y_A 155 DAVKWAKEVEELGAGEILLTSIDR----DGTG------LGYDVELIRRVADSV-RIPVIA------------------SG 205 (253)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTT----TTTC------SCCCHHHHHHHHHHC-SSCEEE------------------ES
T ss_pred CHHHHHHHHHhCCCCEEEEecccC----CCCc------CcCCHHHHHHHHHhc-CCCEEE------------------eC
Confidence 367888999999999999998522 2221 123356778887764 333332 25
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec-CCCCCCc--hHHHHHHHHHHCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS-PSDMMDG--RVGAIRAALDAEGF 285 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA-PSDMMDG--rV~aIR~aLD~~Gf 285 (432)
-|.+-+.+..+ .++|||.|. -|..+.+ ....+++.|+++||
T Consensus 206 Gi~~~~~~~~~-------~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~~g~ 249 (253)
T 1h5y_A 206 GAGRVEHFYEA-------AAAGADAVLAASLFHFRVLSIAQVKRYLKERGV 249 (253)
T ss_dssp CCCSHHHHHHH-------HHTTCSEEEESHHHHTTSSCHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHH-------HHcCCcHHHHHHHHHcCCCCHHHHHHHHHHcCC
Confidence 56554554442 257999653 3444444 47899999999998
No 177
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=62.16 E-value=43 Score=25.55 Aligned_cols=64 Identities=9% Similarity=0.210 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+|+.... ++..|++++= |++.-+++++.+++. ..+|+....-+++......+.+.|..+
T Consensus 37 ~~~~~~a~~~~~---~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 106 (129)
T 1p6q_A 37 AGDGEQGMKIMA---QNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANN 106 (129)
T ss_dssp CSSHHHHHHHHH---TSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSC
T ss_pred cCCHHHHHHHHH---cCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCCCCHHHHHHHHHcCCCE
Confidence 557788886654 2457999886 555668899999875 368998887777766666666666544
No 178
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=62.15 E-value=20 Score=37.86 Aligned_cols=211 Identities=18% Similarity=0.133 Sum_probs=116.4
Q ss_pred CCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 147 MPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 147 MPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
+.|.-.|.-+ -..+.++.+.+.|+..|-+|....+ . .-+.++|+.+|+..-. +-+ ++|.-.+
T Consensus 108 ~~G~~~ypdd-v~~~~ve~a~~aGvd~vrIf~s~sd-~------------~ni~~~i~~ak~~G~~--v~~--~i~~~~~ 169 (539)
T 1rqb_A 108 LLGYRHYNDE-VVDRFVDKSAENGMDVFRVFDAMND-P------------RNMAHAMAAVKKAGKH--AQG--TICYTIS 169 (539)
T ss_dssp TTSSSCCCHH-HHHHHHHHHHHTTCCEEEECCTTCC-T------------HHHHHHHHHHHHTTCE--EEE--EEECCCS
T ss_pred ccCcccCccc-ccHHHHHHHHhCCCCEEEEEEehhH-H------------HHHHHHHHHHHHCCCe--EEE--EEEeeeC
Confidence 4455455432 3577899999999999999976432 1 1257889999887533 222 2321111
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH-H--CCC--ccceeecc
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD-A--EGF--QHVSIMSY 293 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD-~--~Gf--~~v~ImSY 293 (432)
.. - +++.+.+.+-...++|||+|+-.||.= -.|.++|+.+. . -|+ +|+.=|+.
T Consensus 170 ~~-----------~---~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAv 235 (539)
T 1rqb_A 170 PV-----------H---TVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTE 235 (539)
T ss_dssp TT-----------C---CHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHH
T ss_pred CC-----------C---CHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHH
Confidence 11 1 456677777777889999999998865 35778888773 1 122 45555666
Q ss_pred hhhhccccchhhhhhhhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch---h---HHHHHHH
Q 014017 294 TAKYASSFYGPFREALDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY---L---DVIRLLR 366 (432)
Q Consensus 294 SaKyASsfYGPFRdAa~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y---L---DII~~vk 366 (432)
+.=.+..-.|- +.++++- .+|-| +=|.+ -|.+...... .|-| +++-. . +.+.+++
T Consensus 236 AN~laAveAGa--~~VD~ti~g~Ger-tGN~~--------lE~lv~~L~~--~g~~-----tgidl~~L~~is~~v~~~~ 297 (539)
T 1rqb_A 236 VSLMKAIEAGV--DVVDTAISSMSLG-PGHNP--------TESVAEMLEG--TGYT-----TNLDYDRLHKIRDHFKAIR 297 (539)
T ss_dssp HHHHHHHHTTC--SEEEEBCGGGCST-TSBCB--------HHHHHHHTTT--SSEE-----CCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCC--CEEEEeccccCCC-ccChh--------HHHHHHHHHh--cCCC-----chhhHHHHHHHHHHHHHHh
Confidence 55555555553 2233332 24544 66665 4545544433 1322 23211 1 2222222
Q ss_pred hhC---CCC------eEEEEech-hhHHHHH-HHHCCCchhhHHHHHHHHHH
Q 014017 367 DKY---PLP------IAAYQVSG-EYSMIKA-GGALKMIDEQRVMMESLMCL 407 (432)
Q Consensus 367 ~~~---~lP------vaaYqVSG-EYaMika-Aa~~G~id~~~~~~EsL~~i 407 (432)
... .-| +..+|+.| -|+=+++ +.+.|+.|.-.-++|-+...
T Consensus 298 ~~~~~~~~~~~~~~~v~~he~pGG~~Snl~~q~~~~G~~~~~~~v~~~~~~v 349 (539)
T 1rqb_A 298 PKYKKFESKTLVDTSIFKSQIPGGMLSNMESQLRAQGAEDKMDEVMAEVPRV 349 (539)
T ss_dssp GGGGGGCCSCSCCCTHHHHCCCHHHHHHHHHHHHTTSCCTTHHHHHHHHHHH
T ss_pred CCCcCCCCCccCCCceEEecCCcchhhHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 222 112 12345666 4555544 67788876555555555555
No 179
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=62.14 E-value=13 Score=35.49 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=71.5
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-+ .++.|.+ -+.++|+|-|.+.+. .+=|...++.+.+..+-.+++|+.-.
T Consensus 21 ~dg~iD~~-~l~~lv~---~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGv------------ 84 (301)
T 3m5v_A 21 KNGKVDEQ-SYARLIK---RQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGA------------ 84 (301)
T ss_dssp ETTEECHH-HHHHHHH---HHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEEC------------
T ss_pred CCCCCCHH-HHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeC------------
Confidence 35777743 3444443 456799999887653 24566667777766542256665432
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 379 (432)
| -.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||.-|++-
T Consensus 85 ---------g------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (301)
T 3m5v_A 85 ---------G------------SNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVP 143 (301)
T ss_dssp ---------C------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred ---------C------------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 1 125688888877777789999999764322 344556777889999999975
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
|
T Consensus 144 ~ 144 (301)
T 3m5v_A 144 G 144 (301)
T ss_dssp H
T ss_pred h
Confidence 4
No 180
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=62.11 E-value=14 Score=35.50 Aligned_cols=109 Identities=16% Similarity=0.255 Sum_probs=70.1
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+ .++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.=..
T Consensus 25 ~~dg~iD~~-~l~~lv~---~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~-grvpViaGvg---------- 89 (301)
T 1xky_A 25 DINGNIDFA-KTTKLVN---YLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD-KRVPVIAGTG---------- 89 (301)
T ss_dssp CTTSSBCHH-HHHHHHH---HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCceEEeCCC----------
Confidence 356888744 3444433 456789998877553 2346677777776654 2566654311
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+=.+.+.+.+++||..|++
T Consensus 90 -----------------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (301)
T 1xky_A 90 -----------------------SNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV 146 (301)
T ss_dssp -----------------------CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred -----------------------CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 235678887777666789999998654222 34445677788999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 147 P~ 148 (301)
T 1xky_A 147 PG 148 (301)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 181
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=62.01 E-value=10 Score=36.59 Aligned_cols=124 Identities=15% Similarity=0.239 Sum_probs=77.8
Q ss_pred HHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHH
Q 014017 205 LLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAI 276 (432)
Q Consensus 205 ~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aI 276 (432)
.+++.|..++.. -+-||+.. ||.||-+ .++.|++ -+.++|+|-|.+.+. .+=|...+
T Consensus 7 ~~~~~~~Gv~~a---~vTPf~~~--------dg~iD~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~ 71 (316)
T 3e96_A 7 PLAKALETISGI---PITPFRKS--------DGSIDWH-HYKETVD---RIVDNGIDVIVPCGNTSEFYALSLEEAKEEV 71 (316)
T ss_dssp CHHHHTSSEEEC---CCCCBCTT--------TCCBCHH-HHHHHHH---HHHTTTCCEECTTSGGGTGGGSCHHHHHHHH
T ss_pred hhhhcCCceEEe---eeCCccCC--------CCCCCHH-HHHHHHH---HHHHcCCCEEEeCccccCcccCCHHHHHHHH
Confidence 356666554432 25677431 5777743 3444443 455799999988763 34566677
Q ss_pred HHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC
Q 014017 277 RAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL 356 (432)
Q Consensus 277 R~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal 356 (432)
+.+.+..+ .+++|+.-.. - |.+|+++.+..=.+-|||.+||=|-.
T Consensus 72 ~~~v~~~~-grvpViaGvg---------------------------------~-~t~~ai~la~~A~~~Gadavlv~~P~ 116 (316)
T 3e96_A 72 RRTVEYVH-GRALVVAGIG---------------------------------Y-ATSTAIELGNAAKAAGADAVMIHMPI 116 (316)
T ss_dssp HHHHHHHT-TSSEEEEEEC---------------------------------S-SHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHhC-CCCcEEEEeC---------------------------------c-CHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 77777654 3677664321 1 44677776666666799999996432
Q ss_pred ch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 357 PY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 357 ~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
.+ .+-.+.+.+.+++||..|++
T Consensus 117 y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 117 HPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 21 34445666778999999995
No 182
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=61.68 E-value=14 Score=35.26 Aligned_cols=109 Identities=22% Similarity=0.325 Sum_probs=71.3
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-| .++.+.+ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 20 ~~dg~iD~~-~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 84 (297)
T 3flu_A 20 NQDGSIHYE-QLRDLID---WHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA-KRVPVIAGTG---------- 84 (297)
T ss_dssp CTTSCBCHH-HHHHHHH---HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 356788744 3444443 456799998876553 2456666776666654 3566665321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+..++||.-|++
T Consensus 85 -----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 85 -----------------------ANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred -----------------------CcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 125678887777667789999998764322 44455677788999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 142 P~ 143 (297)
T 3flu_A 142 PG 143 (297)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 183
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=61.52 E-value=26 Score=37.40 Aligned_cols=99 Identities=20% Similarity=0.255 Sum_probs=63.3
Q ss_pred hhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec
Q 014017 155 WRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR 234 (432)
Q Consensus 155 i~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~ 234 (432)
+..+-.+.++.|++.|+.-+.+ ...+ |. .--+..+++.||+.||++.||+
T Consensus 278 v~~d~~eR~~aLv~AGvD~ivi----D~ah----Gh-----s~~v~~~i~~ik~~~p~~~via----------------- 327 (556)
T 4af0_A 278 TRPGDKDRLKLLAEAGLDVVVL----DSSQ----GN-----SVYQIEFIKWIKQTYPKIDVIA----------------- 327 (556)
T ss_dssp SSHHHHHHHHHHHHTTCCEEEE----CCSC----CC-----SHHHHHHHHHHHHHCTTSEEEE-----------------
T ss_pred cCccHHHHHHHHHhcCCcEEEE----eccc----cc-----cHHHHHHHHHHHhhCCcceEEe-----------------
Confidence 3345688999999999987655 1111 21 2236789999999999998883
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCee----cCC-----CCC----CchHHHHHHHHHHCCCccceeec
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVV----SPS-----DMM----DGRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiV----APS-----DMM----DGrV~aIR~aLD~~Gf~~v~ImS 292 (432)
|.|-. .++|..+.+||||.| .|- -++ -.++.||.+.-+...-.+++|++
T Consensus 328 --GNVaT-------~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIA 389 (556)
T 4af0_A 328 --GNVVT-------REQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIA 389 (556)
T ss_dssp --EEECS-------HHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEE
T ss_pred --ccccC-------HHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEe
Confidence 22221 356667788999998 332 222 24677777665544323455544
No 184
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=61.34 E-value=12 Score=35.92 Aligned_cols=109 Identities=22% Similarity=0.356 Sum_probs=70.4
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+ .++.|.+ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 17 ~~dg~iD~~-~l~~lv~---~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGvg---------- 81 (300)
T 3eb2_A 17 DAEGRVRAD-VMGRLCD---DLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQ-RRVPVVAGVA---------- 81 (300)
T ss_dssp CTTSCBCHH-HHHHHHH---HHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCBEEEEE----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 346788744 3344433 456799999877643 3356666666666644 3566554321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++
T Consensus 82 -----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (300)
T 3eb2_A 82 -----------------------STSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTN 138 (300)
T ss_dssp -----------------------ESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 235678887776666789999999665332 34455677788999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 139 P~ 140 (300)
T 3eb2_A 139 PQ 140 (300)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 185
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=61.31 E-value=28 Score=31.33 Aligned_cols=162 Identities=22% Similarity=0.255 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+.+.|+..+.+-.. +.. +...+.....++.+++.+ ++-|+. | |
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~--~~~--------~~~~~~~~~~i~~i~~~~-~ipvi~-----------~-------g 81 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDI--TAS--------VEKRKTMLELVEKVAEQI-DIPFTV-----------G-------G 81 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEES--SCS--------SSHHHHHHHHHHHHHTTC-CSCEEE-----------E-------S
T ss_pred CHHHHHHHHHHcCCCEEEEECC--chh--------hcCCcccHHHHHHHHHhC-CCCEEE-----------e-------C
Confidence 4788889999999999877542 111 111223346777787754 333332 2 2
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCC-CCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSD-MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-MMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
.|.+- +++....++|||.|.-.. .+. .-..+++.++..|-+. .+++-+.|-.. |-++ +.. .|
T Consensus 82 gI~~~-------~~~~~~~~~Gad~V~lg~~~l~-~p~~~~~~~~~~g~~~-i~~~~~~~~~~---g~~~--v~~---~g 144 (253)
T 1thf_D 82 GIHDF-------ETASELILRGADKVSINTAAVE-NPSLITQIAQTFGSQA-VVVAIDAKRVD---GEFM--VFT---YS 144 (253)
T ss_dssp SCCSH-------HHHHHHHHTTCSEEEESHHHHH-CTHHHHHHHHHHCGGG-EEEEEEEEEET---TEEE--EEE---TT
T ss_pred CCCCH-------HHHHHHHHcCCCEEEEChHHHh-ChHHHHHHHHHcCCCc-EEEEEEEEccC---CcEE--EEE---CC
Confidence 33222 233444468999874322 111 1123445554445322 22333332100 0000 000 01
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCCch----hHHHHHHHhhCCCCeEE
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGLPY----LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal~Y----LDII~~vk~~~~lPvaa 375 (432)
-...-.. +..|.+++++ +.|+|.|++ ++...+ ++.++++++..++|+.+
T Consensus 145 ~~~~~~~-------~~~e~~~~~~---~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia 200 (253)
T 1thf_D 145 GKKNTGI-------LLRDWVVEVE---KRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 200 (253)
T ss_dssp TTEEEEE-------EHHHHHHHHH---HTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEE
T ss_pred CccccCC-------CHHHHHHHHH---HCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEE
Confidence 1111111 2345555554 479998776 665544 89999999999999976
No 186
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=61.29 E-value=29 Score=25.98 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|++++= |++.-+++++.+++...+|+....-+++......+.+.|..+
T Consensus 31 ~~~~~~~~~~~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 97 (121)
T 1zh2_A 31 AETLQRGLLEAA---TRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADD 97 (121)
T ss_dssp ESSHHHHHHHHH---HHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSE
T ss_pred eCCHHHHHHHHh---cCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHhcCCCe
Confidence 457788887654 3467999876 555668899999965579999887766666655666666543
No 187
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=61.20 E-value=13 Score=35.22 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=69.5
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhh
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
||.||-+ .++.|++ -+.++|+|-+.+.+. .+=|...+|.+.+..+ .+++|+.-..
T Consensus 15 dg~iD~~-~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg------------ 77 (289)
T 2yxg_A 15 NKEVDFD-GLEENIN---FLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN-GRVQVIAGAG------------ 77 (289)
T ss_dssp TTEECHH-HHHHHHH---HHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEECC------------
T ss_pred CCCcCHH-HHHHHHH---HHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC------------
Confidence 5777743 3444433 456789998877653 2246677777776654 2566664321
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEech
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 380 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||.-|++-|
T Consensus 78 ---------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~ 136 (289)
T 2yxg_A 78 ---------------------SNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPS 136 (289)
T ss_dssp ---------------------CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHH
T ss_pred ---------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 225678887777666779999998654322 3444567778899999999744
No 188
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=61.15 E-value=11 Score=36.57 Aligned_cols=82 Identities=27% Similarity=0.376 Sum_probs=53.6
Q ss_pred CHHHHHHHHHhchhcCCcEEEE-----cCCCch----------hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCC--
Q 014017 331 NYREALVEAQADESEGADILLV-----KPGLPY----------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM-- 393 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMV-----KPal~Y----------LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~-- 393 (432)
+.+.|++.++.=++||||||=| .|+-.. +-+|+.+++ +++|+..=.-.- ...++|.++|.
T Consensus 28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~~--~Va~~al~aGa~i 104 (270)
T 4hb7_A 28 NVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRS--EVAEACLKLGVDM 104 (270)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSCH--HHHHHHHHHTCCE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhc-CCCeEEEECCCH--HHHHHHHHhccce
Confidence 3478999999999999999999 888776 456667764 678776543333 34455555442
Q ss_pred chh------hHHHHHHHHHHHHcCccEeehh
Q 014017 394 IDE------QRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 394 id~------~~~~~EsL~~ikRAGAd~IiTY 418 (432)
||. +.-| +.-+...|+-+|+.+
T Consensus 105 INDVs~g~~d~~m---~~~va~~~~~~vlMH 132 (270)
T 4hb7_A 105 INDQWAGLYDHRM---FQIVAKYDAEIILMH 132 (270)
T ss_dssp EEETTTTSSCTHH---HHHHHHTTCEEEEEC
T ss_pred eccccccccchhH---HHHHHHcCCCeEEec
Confidence 221 1223 334566788888753
No 189
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=61.05 E-value=13 Score=36.50 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-+ .++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.=..
T Consensus 45 ~dg~ID~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg----------- 108 (343)
T 2v9d_A 45 ADGQLDKP-GTAALID---DLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD-RRVPVLIGTG----------- 108 (343)
T ss_dssp TTSSBCHH-HHHHHHH---HHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC-----------
T ss_pred CCCCcCHH-HHHHHHH---HHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC-----------
Confidence 46788744 3444433 456789998876553 2246666777766654 2566654321
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVS 379 (432)
-.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-
T Consensus 109 ----------------------~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 166 (343)
T 2v9d_A 109 ----------------------GTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFP 166 (343)
T ss_dssp ----------------------SSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred ----------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 125688887777666779999999664322 344456777889999999974
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
|
T Consensus 167 ~ 167 (343)
T 2v9d_A 167 A 167 (343)
T ss_dssp H
T ss_pred h
Confidence 4
No 190
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=61.02 E-value=23 Score=34.25 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSD 227 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTsh 227 (432)
..+.++.+.+.|...|-|-+-= | +.-.|+.|..--|.--++.+.++.+|+.. +.-|...+..+.|..
T Consensus 146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~- 223 (338)
T 1z41_A 146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTD- 223 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCST-
T ss_pred HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCC-
Confidence 5566677789999999996521 2 22356666543333345678899999998 777887877766632
Q ss_pred CcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 228 GHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 228 GHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
. | .+-+ ...+.|-.+.++|+|.|-=|+
T Consensus 224 --~------g-~~~~----~~~~~a~~l~~~Gvd~i~v~~ 250 (338)
T 1z41_A 224 --K------G-LDIA----DHIGFAKWMKEQGVDLIDCSS 250 (338)
T ss_dssp --T------S-CCHH----HHHHHHHHHHHTTCCEEEEEC
T ss_pred --C------C-CCHH----HHHHHHHHHHHcCCCEEEEec
Confidence 1 2 2222 234445566789999997665
No 191
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.83 E-value=30 Score=27.30 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|+|++= |++.-+++++.+++.. .+|+....-.++......+.+.|..|
T Consensus 34 ~~~~~~a~~~l~~---~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 101 (137)
T 3cfy_A 34 VETGRDAIQFIER---SKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGSVDLAVNLIQKGAED 101 (137)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCcHHHHHHHHHCCccE
Confidence 5678888876653 467999886 6677789999999865 58998887777767777777777654
No 192
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=60.81 E-value=29 Score=31.78 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=79.7
Q ss_pred ccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccc
Q 014017 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASS 300 (432)
Q Consensus 221 Lc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASs 300 (432)
|-.|-+| +++. -...|+.++.||+.|..+ |++.|+ +--+.|...++.|. ++.+.+.. .
T Consensus 4 ~~~~iDh---t~l~---p~~t~~~i~~l~~~a~~~---g~~~v~---v~~~~v~~~~~~l~-----~v~v~~v~-----~ 61 (225)
T 1mzh_A 4 VRKYIDN---AALK---PHLSEKEIEEFVLKSEEL---GIYAVC---VNPYHVKLASSIAK-----KVKVCCVI-----G 61 (225)
T ss_dssp GGGGEEE---EECC---TTCCHHHHHHHHHHHHHT---TCSEEE---ECGGGHHHHHHHCS-----SSEEEEEE-----S
T ss_pred hHhhccc---cccC---CCCCHHHHHHHHHHHHHh---CCeEEE---ECHHHHHHHHHHhc-----CCceeeEe-----c
Confidence 3345455 4452 346799999999999865 888865 33455777777663 34332221 1
Q ss_pred cchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----------cCCCchhHHHHHHHhhCC
Q 014017 301 FYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV----------KPGLPYLDVIRLLRDKYP 370 (432)
Q Consensus 301 fYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----------KPal~YLDII~~vk~~~~ 370 (432)
| |+ | .|.. .| -..+++.=++.|||.|=+ .+. ..++.|+.+++..+
T Consensus 62 ~--P~----------g----~~~~-----~~---k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~-~~~~~i~~v~~a~~ 116 (225)
T 1mzh_A 62 F--PL----------G----LNKT-----SV---KVKEAVEAVRDGAQELDIVWNLSAFKSEKYD-FVVEELKEIFRETP 116 (225)
T ss_dssp T--TT----------C----CSCH-----HH---HHHHHHHHHHTTCSEEEEECCHHHHHTTCHH-HHHHHHHHHHHTCT
T ss_pred C--CC----------C----ccch-----hh---hHHHHHHHHHcCCCEEEEEecHHHHhcCChH-HHHHHHHHHHHHhc
Confidence 1 21 2 1221 11 122233334578887752 111 12456888998887
Q ss_pred CCeEEEEe---chhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 371 LPIAAYQV---SGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 371 lPvaaYqV---SGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|+. ..+ ++ +| +.+ -+.+.......+|||+|-|..
T Consensus 117 -pv~-vKvi~e~~-----------~l-~~~-~~~~~a~~a~eaGad~I~tst 153 (225)
T 1mzh_A 117 -SAV-HKVIVETP-----------YL-NEE-EIKKAVEICIEAGADFIKTST 153 (225)
T ss_dssp -TSE-EEEECCGG-----------GC-CHH-HHHHHHHHHHHHTCSEEECCC
T ss_pred -Cce-EEEEEeCC-----------CC-CHH-HHHHHHHHHHHhCCCEEEECC
Confidence 874 666 43 24 443 367778888899999998764
No 193
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=60.81 E-value=10 Score=37.02 Aligned_cols=49 Identities=18% Similarity=0.083 Sum_probs=34.8
Q ss_pred ccccccCCCCCHHHHHHHHHhchhcCCcEEEEc----CC-C--------chhHHHHHHHhhCCCCeEEEE
Q 014017 321 YVIRVIELYANYREALVEAQADESEGADILLVK----PG-L--------PYLDVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 321 YQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK----Pa-l--------~YLDII~~vk~~~~lPvaaYq 377 (432)
--|| ..+.+.| +.. .+.|||-|||= .- - .-++.|+++++...+||.+..
T Consensus 24 v~~d----~~~~e~A-~~y---e~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~ 85 (297)
T 4adt_A 24 VIMD----VKNVEQA-KIA---EKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKV 85 (297)
T ss_dssp EEEE----ESSHHHH-HHH---HHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEE
T ss_pred cccC----CCcHHHH-HHH---HHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEec
Confidence 3466 6666554 222 57899999997 11 1 148999999999999999863
No 194
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=60.67 E-value=21 Score=30.58 Aligned_cols=79 Identities=6% Similarity=-0.028 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh-------hHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE-------QRVM 400 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~-------~~~~ 400 (432)
..|..||+.... +...|+|+ =|.+.-+++++.+++.. .+|+....-..+......|.+.|..+. .+.+
T Consensus 30 ~~~~~~al~~l~---~~~~dlvi-lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L 105 (223)
T 2hqr_A 30 TESLEDGEYLMD---IRNYDLVM-VSDKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKAL 105 (223)
T ss_dssp ESSHHHHHHHHT---TSCCSEEE-ECCTTHHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHH
T ss_pred ECCHHHHHHHHh---cCCCCEEE-eCCCCHHHHHHHHHhCCCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHH
Confidence 567788887654 24689998 88888999999999886 799999988888888888888887542 2345
Q ss_pred HHHHHHHHHcC
Q 014017 401 MESLMCLRRAG 411 (432)
Q Consensus 401 ~EsL~~ikRAG 411 (432)
.+.+..+.+-+
T Consensus 106 ~~~i~~~~~~~ 116 (223)
T 2hqr_A 106 VARIEARLRFW 116 (223)
T ss_dssp HHHHHHHTSSC
T ss_pred HHHHHHHhccc
Confidence 55555554433
No 195
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=60.43 E-value=52 Score=28.16 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchh------hHH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE------QRV 399 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~------~~~ 399 (432)
..|..||+..... ...|+|++= |.+.-+++++.+++...+|+....-..+......+.+.|..+. .+.
T Consensus 34 ~~~~~~al~~~~~---~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~ 110 (230)
T 2oqr_A 34 VTDGPAALAEFDR---AGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARE 110 (230)
T ss_dssp ECSHHHHHHHHHH---HCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHH
T ss_pred ECCHHHHHHHHhc---cCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 5577888876542 358999886 6667789999999887899999988888888888888776442 245
Q ss_pred HHHHHHHHHHc
Q 014017 400 MMESLMCLRRA 410 (432)
Q Consensus 400 ~~EsL~~ikRA 410 (432)
+.+.+..+.+-
T Consensus 111 l~~~i~~~~~~ 121 (230)
T 2oqr_A 111 LIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 56666665553
No 196
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=60.41 E-value=11 Score=33.25 Aligned_cols=33 Identities=24% Similarity=0.560 Sum_probs=24.8
Q ss_pred hhcCCcEEEEc------CCC-chhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVK------PGL-PYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVK------Pal-~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+|.|.|= +.. ..+++|+++++.+++|+.+
T Consensus 43 ~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 82 (253)
T 1h5y_A 43 EEEGADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLV 82 (253)
T ss_dssp HHTTCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHcCCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEE
Confidence 45799977653 121 4689999999999999875
No 197
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=60.10 E-value=8.4 Score=39.66 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=40.7
Q ss_pred chhcCCcEEEEcCCCc----hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 342 DESEGADILLVKPGLP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 342 Di~EGAD~lMVKPal~----YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
=++.|+|+|.+=-+.. .+|+|+.+|+.+ ++||.+-+|. +. |....+..||||.|+
T Consensus 239 l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~---------------t~-----e~a~~l~~aGaD~I~ 298 (496)
T 4fxs_A 239 LVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVA---------------TA-----EGARALIEAGVSAVK 298 (496)
T ss_dssp HHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEEC---------------SH-----HHHHHHHHHTCSEEE
T ss_pred HHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccC---------------cH-----HHHHHHHHhCCCEEE
Confidence 3567999999865544 479999999999 7999986552 11 233556678999997
No 198
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=59.96 E-value=17 Score=39.62 Aligned_cols=216 Identities=14% Similarity=0.120 Sum_probs=116.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC-CCCCCcceeecCCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP-YSSDGHDGIVREDG 237 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~-YTshGHcGIl~~~g 237 (432)
..+.++.+.+.|+..|-+|.... +-.-+.++++.+|+.- ..+..++|... + .+++. +
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~s~n-------------~l~~l~~~i~~ak~~G--~~v~~~i~~~~d~-~dp~r------~ 256 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFDSLN-------------YLPNMLLGMEAAGSAG--GVVEAAISYTGDV-ADPSR------T 256 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSC-------------CHHHHHHHHHHHHTTT--SEEEEEEECCSCT-TCTTC------C
T ss_pred hHHHHHHHHhcCcCEEEEEecHH-------------HHHHHHHHHHHHHHcC--CeEEEEEEeeccc-cCCCC------C
Confidence 56889999999999999996421 1114567888888764 55555555221 0 11111 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHH-H-CCC--ccceeecchhhhccccchhh
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALD-A-EGF--QHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD-~-~Gf--~~v~ImSYSaKyASsfYGPF 305 (432)
. -+++.+.+++-...++|||+|+-.||.= -.|.++|+.+. - -|| +|+.=|+.+.-.+..-.|-
T Consensus 257 ~----~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa- 331 (718)
T 3bg3_A 257 K----YSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGA- 331 (718)
T ss_dssp T----TCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTC-
T ss_pred C----CCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCC-
Confidence 1 1456677777777889999999999875 35777777762 1 122 4555566665555555552
Q ss_pred hhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhhC---C--CC-
Q 014017 306 REALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKY---P--LP- 372 (432)
Q Consensus 306 RdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~~---~--lP- 372 (432)
+.++++-. +|-| +=|.+ -|.+..+.... |-| +++-. -+.+.+++... . -+
T Consensus 332 -~~VD~ti~GlGer-tGN~~--------lE~vv~~L~~~--g~~-----tgidl~~L~~~s~~v~~~~~~~~~~~~~~~~ 394 (718)
T 3bg3_A 332 -DVVDVAADSMSGM-TSQPS--------MGALVACTRGT--PLD-----TEVPMERVFDYSEYWEGARGLYAAFDCTATM 394 (718)
T ss_dssp -SEEEEBCGGGCST-TSCCB--------HHHHHHHHTTS--TTC-----CCCCHHHHHHHHHHHHHHHHHTGGGCGGGTC
T ss_pred -CEEEecCcccccc-cCchh--------HHHHHHHHHhc--CCC-----cccCHHHHHHHHHHHHHHhCCCcCCcCCccc
Confidence 22333322 3332 44443 34454444332 322 22211 11222222221 1 00
Q ss_pred ------eEEEEe-chhhHHHHH-HHHCCCchhhHHHHHHHHHHHHcCccE-eehh
Q 014017 373 ------IAAYQV-SGEYSMIKA-GGALKMIDEQRVMMESLMCLRRAGADI-ILTY 418 (432)
Q Consensus 373 ------vaaYqV-SGEYaMika-Aa~~G~id~~~~~~EsL~~ikRAGAd~-IiTY 418 (432)
+..+|+ +|-|+-++. +.+.|+.+....++|.+..+++.-.+. -+|=
T Consensus 395 ~g~~~~v~~~e~pGg~~snl~~q~~~~G~~~~~~~v~~~~~~v~~~lG~~~~Vtp 449 (718)
T 3bg3_A 395 KSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTP 449 (718)
T ss_dssp CSCCTTHHHHCCCHHHHHHHHGGGTTTSCTTHHHHHHHHHHHHHHHTTSCCCCTT
T ss_pred cccccceeeccCcchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCccCCc
Confidence 112233 344555554 455888776677788888888544444 3443
No 199
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=59.90 E-value=14 Score=35.61 Aligned_cols=109 Identities=23% Similarity=0.281 Sum_probs=71.6
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-| .++.|. --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 28 ~~dg~iD~~-~l~~lv---~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-grvpviaGvg---------- 92 (304)
T 3l21_A 28 SGDGSLDTA-TAARLA---NHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG-DRARVIAGAG---------- 92 (304)
T ss_dssp CTTSCBCHH-HHHHHH---HHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECC----------
T ss_pred CCCCCcCHH-HHHHHH---HHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEeCC----------
Confidence 346778744 333333 3456789998766543 3456677777777654 3667665421
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|++..+..=.+-|||.+||=|=..| .+-.+.+.+.+++||.-|++
T Consensus 93 -----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 93 -----------------------TYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp -----------------------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 125678887777667789999999764322 34456777888999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 150 P~ 151 (304)
T 3l21_A 150 PG 151 (304)
T ss_dssp HH
T ss_pred cc
Confidence 44
No 200
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=59.47 E-value=73 Score=30.16 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=50.0
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc------------------hhHHHHHHHhhCCCCeEEE---E
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP------------------YLDVIRLLRDKYPLPIAAY---Q 377 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~------------------YLDII~~vk~~~~lPvaaY---q 377 (432)
..|++- ..|.++ ++.+ ++-|+|.|.|=-+.. ..++|+.+|+ ..+++-+| .
T Consensus 74 ~~~~~l----~~~~~~-i~~a---~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~-~G~~v~~~l~~~ 144 (298)
T 2cw6_A 74 INYPVL----TPNLKG-FEAA---VAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQS-ANISVRGYVSCA 144 (298)
T ss_dssp CBCCEE----CCSHHH-HHHH---HHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHH-TTCEEEEEEETT
T ss_pred CEEEEE----cCCHHh-HHHH---HHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-CCCeEEEEEEEE
Confidence 457765 457654 2222 345999988743332 2345666665 46777654 4
Q ss_pred echhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 378 VSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 378 VSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
+|.|| .|..|. +.+.|....+..+|||.|
T Consensus 145 ~~~~~--------~~~~~~-~~~~~~~~~~~~~Ga~~i 173 (298)
T 2cw6_A 145 LGCPY--------EGKISP-AKVAEVTKKFYSMGCYEI 173 (298)
T ss_dssp TCBTT--------TBSCCH-HHHHHHHHHHHHTTCSEE
T ss_pred eeCCc--------CCCCCH-HHHHHHHHHHHHcCCCEE
Confidence 67776 344565 467899999999999986
No 201
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=59.47 E-value=16 Score=35.43 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=70.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+ .++.+.+ -+.++|+|-+.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 36 ~~dg~iD~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~-grvpViaGvg---------- 100 (314)
T 3qze_A 36 DAQGRLDWD-SLAKLVD---FHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK-GRIPVIAGTG---------- 100 (314)
T ss_dssp CTTSCBCHH-HHHHHHH---HHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCEEEECC----------
T ss_pred CCCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC----------
Confidence 345778744 4444444 356789998776543 3346666776766654 2566665321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||.-|++
T Consensus 101 -----------------------~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 101 -----------------------ANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred -----------------------CcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 225678877776666789999999764332 44455677888999999998
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 158 P~ 159 (314)
T 3qze_A 158 PG 159 (314)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 202
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=59.32 E-value=14 Score=36.20 Aligned_cols=109 Identities=25% Similarity=0.225 Sum_probs=70.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------M--DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||- +.++.|++ -+.++|+|-|.+.+. | +=|...+|.+.+..+ .+++|+.=..
T Consensus 47 ~~dg~iD~-~~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg---------- 111 (332)
T 2r8w_A 47 DEAGRVDI-EAFSALIA---RLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILR-GRRTLMAGIG---------- 111 (332)
T ss_dssp CTTCCBCH-HHHHHHHH---HHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TSSEEEEEEC----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEecC----------
Confidence 34677874 34444444 345689999877653 2 246677777776654 2566654321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
-.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++
T Consensus 112 -----------------------~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 112 -----------------------ALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred -----------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 225678887777666779999999664322 44445677888999999997
Q ss_pred ch
Q 014017 379 SG 380 (432)
Q Consensus 379 SG 380 (432)
-|
T Consensus 169 P~ 170 (332)
T 2r8w_A 169 PT 170 (332)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 203
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=59.17 E-value=27 Score=32.59 Aligned_cols=65 Identities=18% Similarity=0.105 Sum_probs=43.2
Q ss_pred hcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHH
Q 014017 344 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQA 423 (432)
Q Consensus 344 ~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~ 423 (432)
...++.+-..-...--+.|+.+++ .+++|.+|-|--+ |.+..+.+.|+|.|||-+-..+
T Consensus 216 ~~~~~~v~~~~~~~~~~~v~~~~~-~G~~v~~wTvn~~--------------------~~~~~l~~~GVdgIiTD~P~~~ 274 (287)
T 2oog_A 216 RSYAIGLGPDYTDLTEQNTHHLKD-LGFIVHPYTVNEK--------------------ADMLRLNKYGVDGVFTNFADKY 274 (287)
T ss_dssp HTTCSEEEEBGGGCCHHHHHHHHH-TTCEECCBCCCSH--------------------HHHHHHHHHTCSEEEESCHHHH
T ss_pred hhhheEEcccHhhcCHHHHHHHHH-CCCeEEEEeCCCH--------------------HHHHHHHHcCCCEEEeCCHHHH
Confidence 345665543222222457777775 5899999988432 2334456779999999999888
Q ss_pred HHHHhc
Q 014017 424 ARCLCG 429 (432)
Q Consensus 424 a~wL~~ 429 (432)
.++|.+
T Consensus 275 ~~~~~~ 280 (287)
T 2oog_A 275 KEVIKE 280 (287)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 888875
No 204
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=58.97 E-value=15 Score=35.32 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=69.0
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC------C--CchHHHHHHHHHHCCCccceeecchhhhccccchhhhh
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM------M--DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM------M--DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
||.||-+ .++.|+ --+.++|+|-|.+.+. | +=|...++.+.+..+ .+++|+.-..
T Consensus 27 dg~iD~~-~l~~lv---~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~-grvpViaGvg------------ 89 (306)
T 1o5k_A 27 NGELDLE-SYERLV---RYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD-GKIPVIVGAG------------ 89 (306)
T ss_dssp TTEECHH-HHHHHH---HHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT-TSSCEEEECC------------
T ss_pred CCCcCHH-HHHHHH---HHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC-CCCeEEEcCC------------
Confidence 6778743 334443 3456789998876542 2 246677777776654 2566664321
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEech
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqVSG 380 (432)
-.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-|
T Consensus 90 ---------------------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 148 (306)
T 1o5k_A 90 ---------------------TNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPG 148 (306)
T ss_dssp ---------------------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHH
T ss_pred ---------------------CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCcc
Confidence 235678887777666779999999654222 3444567778899999999744
No 205
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=58.81 E-value=24 Score=35.31 Aligned_cols=77 Identities=22% Similarity=0.245 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe-eecccCCCCCCcceeecC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT-DVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit-DVcLc~YTshGHcGIl~~ 235 (432)
....+.++.+.+.|+.-|.+-. +. |. . -.+.+.|+.||+.+|++.||. .| .
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~--a~------G~----~-~~~~e~I~~ir~~~~~~~Vi~G~V-------------~-- 150 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDV--AH------AH----A-KYVGKTLKSLRQLLGSRCIMAGNV-------------A-- 150 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEC--SC------CS----S-HHHHHHHHHHHHHHTTCEEEEEEE-------------C--
T ss_pred HHHHHHHHHHHHcCCCEEEEeC--CC------CC----c-HhHHHHHHHHHHhcCCCeEEEcCc-------------C--
Confidence 3467889999999999655521 11 11 0 124578999999999988885 21 1
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVG 274 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~ 274 (432)
| .+.|....++|||.|--| +--|++.
T Consensus 151 --------T----~e~A~~a~~aGaD~I~Vg-~g~G~~~ 176 (361)
T 3r2g_A 151 --------T----YAGADYLASCGADIIKAG-IGGGSVC 176 (361)
T ss_dssp --------S----HHHHHHHHHTTCSEEEEC-CSSSSCH
T ss_pred --------C----HHHHHHHHHcCCCEEEEc-CCCCcCc
Confidence 1 134666778999988753 3345544
No 206
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=58.69 E-value=13 Score=35.34 Aligned_cols=107 Identities=14% Similarity=0.231 Sum_probs=67.5
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++| .||- +.++.|.+ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 16 ~~d-~iD~-~~l~~lv~---~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~-grvpviaGv----------- 78 (292)
T 3daq_A 16 TNN-KVNL-EALKAHVN---FLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD-KRVPVIAGT----------- 78 (292)
T ss_dssp ETT-EECH-HHHHHHHH---HHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEEC-----------
T ss_pred CCC-CcCH-HHHHHHHH---HHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhC-CCCcEEEeC-----------
Confidence 345 6663 34444443 456799998877653 2445566666666543 355555431
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------hHHHHHHHhhCCCCeEEEEe
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------LDII~~vk~~~~lPvaaYqV 378 (432)
| -.|.+|++..+..=.+-|||.+||=|-..| .+=.+.+.+.+++||.-|++
T Consensus 79 ----------g------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 136 (292)
T 3daq_A 79 ----------G------------TNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNV 136 (292)
T ss_dssp ----------C------------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred ----------C------------cccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 1 235678887776666679999999765333 34455666777999999996
Q ss_pred c
Q 014017 379 S 379 (432)
Q Consensus 379 S 379 (432)
-
T Consensus 137 P 137 (292)
T 3daq_A 137 P 137 (292)
T ss_dssp H
T ss_pred c
Confidence 3
No 207
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=58.66 E-value=18 Score=34.39 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=46.6
Q ss_pred CCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHH
Q 014017 346 GADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAAR 425 (432)
Q Consensus 346 GAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~ 425 (432)
|+|.+-..-...--+.|+.+++ .+++|.+|-|- .+ |.+..+...|+|.|||=+-..+.+
T Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~-~Gl~V~~WTVn----------------~~----~~~~~l~~~GVDgIiTD~P~~~~~ 303 (313)
T 3l12_A 245 GGQLWCPYFLDVTPELVAEAHD-LGLIVLTWTVN----------------EP----EDIRRMATTGVDGIVTDYPGRTQR 303 (313)
T ss_dssp TCSEEEEBGGGCCHHHHHHHHH-TTCEEEEBCCC----------------SH----HHHHHHHHHTCSEEEESCHHHHHH
T ss_pred CCcEEecchhcCCHHHHHHHHH-CCCEEEEEcCC----------------CH----HHHHHHHHcCCCEEEeCCHHHHHH
Confidence 5888765433333567888876 48999999984 22 334456677999999999988888
Q ss_pred HHhcc
Q 014017 426 CLCGE 430 (432)
Q Consensus 426 wL~~~ 430 (432)
+|++.
T Consensus 304 ~l~~~ 308 (313)
T 3l12_A 304 ILIDM 308 (313)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88753
No 208
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=58.64 E-value=38 Score=26.24 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh--CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+|+..... ....|+|++- |.+.-+++++.+++. ..+|+....-..+......+.+.|..+
T Consensus 37 ~~~~~~a~~~~~~--~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 106 (136)
T 3hdv_A 37 ADGAEEARLYLHY--QKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVD 106 (136)
T ss_dssp ESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHHh--CCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcce
Confidence 4577787776653 2237999886 666679999999986 469999887766666666666666543
No 209
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=58.55 E-value=46 Score=25.44 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+++.... ++..|++++= |++.=+++++.+++.. .+|+....-.++......+.+.|..+
T Consensus 33 ~~~~~~~~~~~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 100 (126)
T 1dbw_A 33 HQSAEAFLAFAP---DVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVD 100 (126)
T ss_dssp ESCHHHHHHHGG---GCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHh---cCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHhCHHH
Confidence 456677776543 2457888875 6666789999999865 69999987766666666666776644
No 210
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=58.53 E-value=26 Score=31.60 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=16.0
Q ss_pred hhHHHHHHHhhCCCCeEEE
Q 014017 358 YLDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaaY 376 (432)
.+++|+++|+.+++||..-
T Consensus 68 ~~~~i~~i~~~~~~pv~~~ 86 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLM 86 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHhhCCCCEEEE
Confidence 3889999999999997754
No 211
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=58.18 E-value=7.8 Score=38.11 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEE
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaa 375 (432)
+.+..||+.-+.. + |-.+.++|+++++ .++|+.+++.++.+|+.
T Consensus 33 ~~~~~eal~l~~~-l--~~~v~~vKVG~~lf~~~G~~~V~~Lk~~~g~~Ifl 81 (303)
T 3ru6_A 33 LSTKEECLQLAKE-L--KNLDIWLKVGLRAYLRDGFKFIEELKKVDDFKIFL 81 (303)
T ss_dssp CSSHHHHHHHHHH-T--TTSSCEEEECHHHHHHHTHHHHHHHHHHCCCEEEE
T ss_pred CCCHHHHHHHHHH-h--CCCccEEEeCHHHHHHhCHHHHHHHHHhhCCCEEE
Confidence 7788887665542 3 3456789999987 68999999987666664
No 212
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=58.06 E-value=17 Score=35.19 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=70.6
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-+. ++.|. --+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 25 ~dg~iD~~~-l~~lv---~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGv------------ 87 (318)
T 3qfe_A 25 KTDTLDLAS-QERYY---AYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVG-PDFPIMAGV------------ 87 (318)
T ss_dssp TTTEECHHH-HHHHH---HHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC-TTSCEEEEC------------
T ss_pred CCCCCCHHH-HHHHH---HHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeC------------
Confidence 567887443 33333 3566789998876653 3446666666666654 356666432
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch---h------HHHHHHHhhCCCCeEEEE
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY---L------DVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y---L------DII~~vk~~~~lPvaaYq 377 (432)
| -.|.+|++..+..=.+-|||.+||=|-..| + +=.+.+.+.+++||.-|+
T Consensus 88 ---------g------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn 146 (318)
T 3qfe_A 88 ---------G------------AHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYN 146 (318)
T ss_dssp ---------C------------CSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ---------C------------CCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 1 236678888777667789999999776444 2 223466678899999999
Q ss_pred echh
Q 014017 378 VSGE 381 (432)
Q Consensus 378 VSGE 381 (432)
+-|-
T Consensus 147 ~P~~ 150 (318)
T 3qfe_A 147 FPGV 150 (318)
T ss_dssp CCC-
T ss_pred CCcc
Confidence 9653
No 213
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=57.44 E-value=53 Score=32.74 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
..+.++.+++.|+.-|.|.- .. | ++ ..+...|+.+|+.+|++.|+.
T Consensus 109 ~~~~~~~lieaGvd~I~idt--a~------G----~~-~~~~~~I~~ik~~~p~v~Vi~ 154 (366)
T 4fo4_A 109 NEERVKALVEAGVDVLLIDS--SH------G----HS-EGVLQRIRETRAAYPHLEIIG 154 (366)
T ss_dssp CHHHHHHHHHTTCSEEEEEC--SC------T----TS-HHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeC--CC------C----CC-HHHHHHHHHHHHhcCCCceEe
Confidence 57789999999999776631 11 1 11 134568999999999987775
No 214
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=57.39 E-value=21 Score=32.76 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=72.3
Q ss_pred CchHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCC-----CHHHHHHHHHhch
Q 014017 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYA-----NYREALVEAQADE 343 (432)
Q Consensus 270 DGrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~-----N~~EAlre~~~Di 343 (432)
.+-+..+-+.|.+.|+ .++.|.||....- --+|+. .|.. +++.+. .. +..+ +.+.. -
T Consensus 116 ~~~~~~v~~~l~~~~~~~~v~~~SF~~~~l----~~~~~~---~p~~---~~~l~~----~~~~~~~~~~~-~~~~~--~ 178 (250)
T 3ks6_A 116 EGFVALVIAGLERHSMLERTTFSSFLLASM----DELWKA---TTRP---RLWLVS----PSVLQQLGPGA-VIETA--I 178 (250)
T ss_dssp TTHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHH---CCSC---EEEEEC----HHHHHHHHHHH-HHHHH--H
T ss_pred hHHHHHHHHHHHhcCCCCCEEEEeCCHHHH----HHHHHH---CCCC---cEEEEe----cccccccchhH-HHHHH--H
Confidence 4668888888888887 5576766643321 223332 3332 122221 10 0011 11111 2
Q ss_pred hcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHH
Q 014017 344 SEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQA 423 (432)
Q Consensus 344 ~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~ 423 (432)
.-|++.+-..-...--+.|+.+++ .+++|.+|-| |.. |.+..+...|+|.|||-+-..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~v~~~~~-~G~~V~~WTv----------------n~~----~~~~~l~~~GVDgIiTD~P~~~ 237 (250)
T 3ks6_A 179 AHSIHEIGVHIDTADAGLMAQVQA-AGLDFGCWAA----------------HTP----SQITKALDLGVKVFTTDRPTLA 237 (250)
T ss_dssp HTTCCEEEEEGGGCCHHHHHHHHH-TTCEEEEECC----------------CSH----HHHHHHHHHTCSEEEESCHHHH
T ss_pred hcCCCEEecchhhCCHHHHHHHHH-CCCEEEEEeC----------------CCH----HHHHHHHHcCCCEEEcCCHHHH
Confidence 357888765443334577888775 5899999987 332 3345566779999999998888
Q ss_pred HHHHhc
Q 014017 424 ARCLCG 429 (432)
Q Consensus 424 a~wL~~ 429 (432)
.+++++
T Consensus 238 ~~~~~~ 243 (250)
T 3ks6_A 238 IALRTE 243 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 215
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=57.05 E-value=37 Score=26.15 Aligned_cols=64 Identities=22% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh-C-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK-Y-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~-~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|++++= |++.-+|+++.+++. . ..|+....-+++......+.+.|..+
T Consensus 34 ~~~~~~a~~~~~---~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 102 (130)
T 1dz3_A 34 AYNGQDCLQMLE---EKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASY 102 (130)
T ss_dssp ESSHHHHHHHHH---HHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEE
T ss_pred eCCHHHHHHHHh---cCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCE
Confidence 568888887765 2457999876 666678999999985 3 57888887777777777777777654
No 216
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=56.93 E-value=46 Score=32.09 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=63.7
Q ss_pred hCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCc----------hhHHHHHHHhhCCCCe
Q 014017 310 DSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLP----------YLDVIRLLRDKYPLPI 373 (432)
Q Consensus 310 ~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~----------YLDII~~vk~~~~lPv 373 (432)
+-+| +|-|-..|+ +.++|+..+..-+++|||||=|= |+.. .+-+|+.+++. ++||
T Consensus 13 N~TpDSFsdgg~~~--------~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~-~~pi 83 (280)
T 1eye_A 13 NVTDDSFSDGGCYL--------DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ-GITV 83 (280)
T ss_dssp ECSCCTTCSSCCCC--------SHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT-TCCE
T ss_pred eCCCCCcCCCcccC--------CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCEE
Confidence 4455 465544342 34899999999999999999774 5432 26677777776 8998
Q ss_pred EEEEechhhHHHHHHHHCC--Cchh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 374 AAYQVSGEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 374 aaYqVSGEYaMikaAa~~G--~id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
..= |=....+++|.++| +||. ....-|.+.-+++.|+-+|+...
T Consensus 84 SID--T~~~~va~aAl~aGa~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~ 132 (280)
T 1eye_A 84 SID--TMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHW 132 (280)
T ss_dssp EEE--CSCHHHHHHHHHTTCCEEEETTTTSSCTTHHHHHHHHTCCEEEECC
T ss_pred EEe--CCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcC
Confidence 763 44556778888877 3321 00011345556888999999664
No 217
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=56.65 E-value=19 Score=34.92 Aligned_cols=67 Identities=24% Similarity=0.269 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC 406 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ 406 (432)
..|..|+ +|+. +.|||+||+-|- +.+-++++.+.. ++|+.| | |-|+ .|.+..
T Consensus 203 v~t~eea-~eA~---~aGaD~I~ld~~--~~~~~k~av~~v~~~ipi~A---s------------GGIt-----~eni~~ 256 (286)
T 1x1o_A 203 VRSLEEL-EEAL---EAGADLILLDNF--PLEALREAVRRVGGRVPLEA---S------------GNMT-----LERAKA 256 (286)
T ss_dssp ESSHHHH-HHHH---HHTCSEEEEESC--CHHHHHHHHHHHTTSSCEEE---E------------SSCC-----HHHHHH
T ss_pred eCCHHHH-HHHH---HcCCCEEEECCC--CHHHHHHHHHHhCCCCeEEE---E------------cCCC-----HHHHHH
Confidence 5676775 4443 569999999994 667777776654 578766 3 3466 456678
Q ss_pred HHHcCccEeehhcHH
Q 014017 407 LRRAGADIILTYFAL 421 (432)
Q Consensus 407 ikRAGAd~IiTYfA~ 421 (432)
+..+|+|+|.+-..-
T Consensus 257 ~a~tGvD~IsVgs~~ 271 (286)
T 1x1o_A 257 AAEAGVDYVSVGALT 271 (286)
T ss_dssp HHHHTCSEEECTHHH
T ss_pred HHHcCCCEEEEcHHH
Confidence 999999999864433
No 218
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=56.47 E-value=54 Score=26.03 Aligned_cols=91 Identities=12% Similarity=0.100 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+..... +..|+|++= |.+.-+++++.+++.. .+|+..+.-+.+......+.+.|..+. .+
T Consensus 37 ~~~~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 113 (153)
T 3cz5_A 37 AADAGEAYRLYRE---TTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPA 113 (153)
T ss_dssp ESSHHHHHHHHHT---TCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTT
T ss_pred eCCHHHHHHHHhc---CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHH
Confidence 5688888876653 458999986 5566789999999876 599999888777777788888887653 23
Q ss_pred HHHHHHHHHHHcCccEeehhcHHHHHHHH
Q 014017 399 VMMESLMCLRRAGADIILTYFALQAARCL 427 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiTYfA~~~a~wL 427 (432)
.+.+.+..+.+-. .|+.+++++.|
T Consensus 114 ~L~~~i~~~~~~~-----~~~~~~~~~~l 137 (153)
T 3cz5_A 114 ELVQAIEAILAGR-----RAMSPDIAQEI 137 (153)
T ss_dssp HHHHHHHHHTTTC-----CEECHHHHHHH
T ss_pred HHHHHHHHHHhCC-----ccCChHHHHHH
Confidence 4555555544432 34555555544
No 219
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=56.41 E-value=22 Score=35.73 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=79.4
Q ss_pred chHHHHHHHHHHCCCc---cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCC-----HHHHHHHHHhc
Q 014017 271 GRVGAIRAALDAEGFQ---HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYAN-----YREALVEAQAD 342 (432)
Q Consensus 271 GrV~aIR~aLD~~Gf~---~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N-----~~EAlre~~~D 342 (432)
-+|.+||+++.+.|+. ++.||-=+| ||.||. +..|-+. -.| ..||++ ....
T Consensus 220 ~~l~~vreai~~~g~~~G~dv~l~vDaa--as~~~~--------------~~~Y~~~----~~n~~~~t~~~ai~-~~~~ 278 (431)
T 2fym_A 220 EALAVIAEAVKAAGYELGKDITLAMDCA--ASEFYK--------------DGKYVLA----GEGNKAFTSEEFTH-FLEE 278 (431)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEECC--GGGGEE--------------TTEEEEG----GGTTEEECHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhccCCCCccEEEEeec--hhhccc--------------cCceeec----cCCCCCCCHHHHHH-HHHH
Confidence 5799999999999994 688887655 788983 1246553 223 466654 3444
Q ss_pred hhcCCcEEEEcCCCch--hHHHHHHHhhC--CCCeEEEE--echhhHHHHHHHHCCCchh-----hH--HHHHHHHH---
Q 014017 343 ESEGADILLVKPGLPY--LDVIRLLRDKY--PLPIAAYQ--VSGEYSMIKAGGALKMIDE-----QR--VMMESLMC--- 406 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y--LDII~~vk~~~--~lPvaaYq--VSGEYaMikaAa~~G~id~-----~~--~~~EsL~~--- 406 (432)
+++.-++.++.=-++- +|=.+++++++ ++||++=. |.. -..++.+.++|.+|- -+ -+.|++..
T Consensus 279 L~~~~~i~~iEePl~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~-~~~~~~~i~~~a~d~i~ik~~~~GGite~~~i~~~ 357 (431)
T 2fym_A 279 LTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTN-TKILKEGIEKGIANSILIKFNQIGSLTETLAAIKM 357 (431)
T ss_dssp HHHHSCEEEEESCSCTTCHHHHHHHHHHHTTTSEEEESTTTTTC-HHHHHHHHHTTCCSEEEECGGGTCSHHHHHHHHHH
T ss_pred HHHhCCceEEECCCCcccHHHHHHHHHHhCCCCeEEeCCcccCC-HHHHHHHHHhCCCCEEEECccccCCHHHHHHHHHH
Confidence 5554678777644444 56678888888 89998633 111 245666677777663 22 25555554
Q ss_pred HHHcCccEeeh
Q 014017 407 LRRAGADIILT 417 (432)
Q Consensus 407 ikRAGAd~IiT 417 (432)
.+.+|-.++++
T Consensus 358 A~~~g~~~~~~ 368 (431)
T 2fym_A 358 AKDAGYTAVIS 368 (431)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCeEEEe
Confidence 45667777664
No 220
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=56.32 E-value=27 Score=34.78 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=55.1
Q ss_pred hhhhhhCCCCCCCcccccccccCCC-CCHHHHHHHHHhchhcCCcEEEE-------cCC-Cc-----hhHHHHHHHhhCC
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELY-ANYREALVEAQADESEGADILLV-------KPG-LP-----YLDVIRLLRDKYP 370 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p-~N~~EAlre~~~Di~EGAD~lMV-------KPa-l~-----YLDII~~vk~~~~ 370 (432)
.|+.+.+.|.+++--..|+. + .+.++ ++++...++.||..|=+ +|. -. ++|+|+.+++.++
T Consensus 113 vr~~ap~~~~~anlg~~ql~----~~~~~~~-~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~ 187 (368)
T 3vkj_A 113 VRKVAPTIPIIANLGMPQLV----KGYGLKE-FQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELS 187 (368)
T ss_dssp HHHHCSSSCEEEEEEGGGGG----TTCCHHH-HHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCS
T ss_pred HHHhCcCcceecCcCeeecC----CCCCHHH-HHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcC
Confidence 35444445555555677776 6 34444 44444445666666543 232 22 7999999999999
Q ss_pred CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 371 LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 371 lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+||.+=.|-+- +. .|....+..+|||.|.
T Consensus 188 vPVivK~vG~g------------~s-----~~~A~~l~~aGad~I~ 216 (368)
T 3vkj_A 188 VPIIVKESGNG------------IS-----METAKLLYSYGIKNFD 216 (368)
T ss_dssp SCEEEECSSSC------------CC-----HHHHHHHHHTTCCEEE
T ss_pred CCEEEEeCCCC------------CC-----HHHHHHHHhCCCCEEE
Confidence 99987544211 11 2345566788888885
No 221
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=56.20 E-value=66 Score=32.18 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=62.3
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||- +.++.|++ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 72 ~~dg~ID~-~al~~lv~---~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~-grvpViaGvg---------- 136 (360)
T 4dpp_A 72 LPDGRFDL-EAYDDLVN---IQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG-GSIKVIGNTG---------- 136 (360)
T ss_dssp CTTSSBCH-HHHHHHHH---HHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT-TTSEEEEECC----------
T ss_pred CCCCCcCH-HHHHHHHH---HHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC-CCCeEEEecC----------
Confidence 34677773 44455544 456799998877653 3456666777776654 3566664321
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch----hHHHHHHHhhC-CCCeEEEEech
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY----LDVIRLLRDKY-PLPIAAYQVSG 380 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y----LDII~~vk~~~-~lPvaaYqVSG 380 (432)
-.|.+|++..+..=.+-|||.+||=|-..| =.+++-.++-. .+|+..|++-|
T Consensus 137 -----------------------~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~a~PiilYNiP~ 193 (360)
T 4dpp_A 137 -----------------------SNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLHMGPTIIYNVPG 193 (360)
T ss_dssp -----------------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGGGSCEEEEECHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCCc
Confidence 124567776666656678888887654211 12333222211 26888887633
No 222
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=56.09 E-value=19 Score=27.57 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CC-CchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PG-LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pa-l~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 392 (432)
..|..||+...... +..|+|++= |. +.-+++++.+++.. .+|+....-..+......+.+.|
T Consensus 35 ~~~~~~a~~~l~~~--~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ 101 (132)
T 2rdm_A 35 VSSGAKAIEMLKSG--AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS 101 (132)
T ss_dssp ESSHHHHHHHHHTT--CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC
T ss_pred ECCHHHHHHHHHcC--CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc
Confidence 55778888766532 258999986 54 66789999999876 59999987766555555444443
No 223
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=55.82 E-value=20 Score=34.38 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=69.3
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+||.||-+ .++.+.+ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 28 ~dg~iD~~-~l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-gr~pviaGvg----------- 91 (307)
T 3s5o_A 28 ATAEVDYG-KLEENLH---KLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMP-KNRLLLAGSG----------- 91 (307)
T ss_dssp TTSCBCHH-HHHHHHH---HHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSC-TTSEEEEECC-----------
T ss_pred CCCCcCHH-HHHHHHH---HHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcC-CCCcEEEecC-----------
Confidence 46778744 4444433 456899998866542 3455666666666554 3566554321
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchh------HHH---HHHHhhCCCCeEEEE
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYL------DVI---RLLRDKYPLPIAAYQ 377 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YL------DII---~~vk~~~~lPvaaYq 377 (432)
-.|.+|+++.+..=.+-|||.+||=|-..|- .++ +.+.+..++||.-|+
T Consensus 92 ----------------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn 149 (307)
T 3s5o_A 92 ----------------------CESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYS 149 (307)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ----------------------CCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEe
Confidence 1266788877776677899999996554331 243 455677899999999
Q ss_pred ech
Q 014017 378 VSG 380 (432)
Q Consensus 378 VSG 380 (432)
+-|
T Consensus 150 ~P~ 152 (307)
T 3s5o_A 150 VPA 152 (307)
T ss_dssp CHH
T ss_pred CCc
Confidence 844
No 224
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=55.81 E-value=49 Score=26.27 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+..... ....|+|++= |.+.-+|+++.+++.+ .+|+....-..+-..+..+.+.|..+. .+
T Consensus 35 ~~~~~~a~~~l~~--~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 112 (154)
T 2qsj_A 35 AETVSDALAFLEA--DNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHELIRAALEAGADGFIPKSADPQ 112 (154)
T ss_dssp ESSHHHHHHHHHT--TCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHH
T ss_pred ecCHHHHHHHHhc--cCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHH
Confidence 5577888877653 1458999886 5556689999999876 589998776666677777777776542 23
Q ss_pred HHHHHHHHHHH
Q 014017 399 VMMESLMCLRR 409 (432)
Q Consensus 399 ~~~EsL~~ikR 409 (432)
.+.+.+..+.+
T Consensus 113 ~L~~~l~~~~~ 123 (154)
T 2qsj_A 113 VLIHAVSLILE 123 (154)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 44555544443
No 225
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=55.72 E-value=75 Score=30.13 Aligned_cols=50 Identities=14% Similarity=0.358 Sum_probs=33.5
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----cCC-----CchhHHHHHHHhhCCCCeE
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLV----KPG-----LPYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----KPa-----l~YLDII~~vk~~~~lPva 374 (432)
.+.|.++ + +|.+.++..-.+.|+.-|.. -|. -.++|+++.+|+.+++++.
T Consensus 86 ~~~~~ls----~---eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~ 144 (350)
T 3t7v_A 86 INRYRLT----M---EEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIM 144 (350)
T ss_dssp CCCCBCC----H---HHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEE
T ss_pred CCceeCC----H---HHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEE
Confidence 3456676 4 66666666556688886654 232 1238999999998887774
No 226
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=55.70 E-value=1.1e+02 Score=26.93 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDV 219 (432)
.+.++.+.+.|...|.+-.. .. .+++..+.+.++.+|+.+|++.++.++
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~---~~--------~~p~~~~~~~i~~~~~~~~~~~v~~~~ 126 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDAT---LQ--------QRPKETLDELVSYIRTHAPNVEIMADI 126 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECS---CS--------CCSSSCHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeee---cc--------cCcccCHHHHHHHHHHhCCCceEEecC
Confidence 56788899999988776332 11 123334678999999999998887543
No 227
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=55.58 E-value=23 Score=35.76 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCC---eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHc--CCCeecCCCCCC--c-
Q 014017 200 PRTIWLLKDRYPD---LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARA--GADVVSPSDMMD--G- 271 (432)
Q Consensus 200 ~raIr~iK~~fPd---l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~A--GADiVAPSDMMD--G- 271 (432)
..|++..++.||+ +.+- .|.|.+ -.+.|+..|++ |+|+|=.-.|-. |
T Consensus 197 ~~A~~~~~~~~p~~~~~~vl----vDT~d~---------------------~~~~al~~a~~l~~~d~IrlDs~~~~~gd 251 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLL----IDTYMD---------------------EKFAAIKIAEMFDKVDYIRLDTPSSRRGN 251 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEE----CCSSSC---------------------HHHHHHHHHTTCSCCCEEEECCCGGGCSC
T ss_pred HHHHHHHHHhCCCCCCEEEE----EcCchH---------------------HHHHHHHHHHhhcCCcEEEeCCCCCCccc
Confidence 7899999999996 3333 233411 12345555566 888887666532 3
Q ss_pred ---hHHHHHHHHHHCCCcccee
Q 014017 272 ---RVGAIRAALDAEGFQHVSI 290 (432)
Q Consensus 272 ---rV~aIR~aLD~~Gf~~v~I 290 (432)
-|..+|+.||+.||.++.|
T Consensus 252 ~~~~v~~v~~~ld~~G~~~~~I 273 (398)
T 2i1o_A 252 FEALIREVRWELALRGRSDIKI 273 (398)
T ss_dssp HHHHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHHHHhCCCCceEE
Confidence 3556788888888766544
No 228
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=55.30 E-value=1e+02 Score=29.14 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHHcCCCeecCCCCCC-----------------chHHHHHHHHHHCCCc
Q 014017 253 VSQARAGADVVSPSDMMD-----------------GRVGAIRAALDAEGFQ 286 (432)
Q Consensus 253 vs~A~AGADiVAPSDMMD-----------------GrV~aIR~aLD~~Gf~ 286 (432)
..--.+||+.+.|.=+=+ -.+..+.+.+.++||.
T Consensus 287 ~~~l~~Gan~~~~~~~~~~~~ag~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 337 (350)
T 3t7v_A 287 VLRLNAGANIVTSILPPDSQLEGVANYDRDLEERDRDIKSVVRRLEIMGMK 337 (350)
T ss_dssp HHHHHTTCCEEEEECCSSCCCCCSSCTTTTCSSCCCCHHHHHHHHHHHTCE
T ss_pred HHHHhcCCceecCCCCCCCCCCCCCCCcccchhccCCHHHHHHHHHHcCCc
Confidence 334478999988763323 1568888888888883
No 229
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=55.21 E-value=22 Score=32.81 Aligned_cols=159 Identities=18% Similarity=0.270 Sum_probs=96.2
Q ss_pred HHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 160 VQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
.+.++++.+...+.+.| +|.| +-+++.+..+|++-.-++|-.| .+. |-
T Consensus 19 ~~~l~~al~s~~~~ifll~g~i----------------~~l~~~v~~lk~~~K~v~Vh~D-------------li~--Gl 67 (192)
T 3kts_A 19 QKDMEKILELDLTYMVMLETHV----------------AQLKALVKYAQAGGKKVLLHAD-------------LVN--GL 67 (192)
T ss_dssp SHHHHHHTTSSCCEEEECSEET----------------TTHHHHHHHHHHTTCEEEEEGG-------------GEE--TC
T ss_pred HHHHHHHHcCCCCEEEEecCcH----------------HHHHHHHHHHHHcCCeEEEecC-------------chh--cc
Confidence 35567777777766666 3322 4578889999988754444322 231 22
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR 318 (432)
=.+...++.|++ .-+ |....-=++..|+.+- +.|+. .|.
T Consensus 68 s~d~~ai~fL~~------~~~-----pdGIIsTk~~~i~~Ak-~~gL~--tIq--------------------------- 106 (192)
T 3kts_A 68 KNDDYAIDFLCT------EIC-----PDGIISTRGNAIMKAK-QHKML--AIQ--------------------------- 106 (192)
T ss_dssp CCSHHHHHHHHH------TTC-----CSEEEESCHHHHHHHH-HTTCE--EEE---------------------------
T ss_pred CCcHHHHHHHHh------CCC-----CCEEEeCcHHHHHHHH-HCCCe--EEE---------------------------
Confidence 123345666653 223 4444556788888776 55662 221
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhc-CCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhh
Q 014017 319 KTYVIRVIELYANYREALVEAQADESE-GADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQ 397 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~E-GAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~ 397 (432)
+-|-+| ..++.-...=+++ ..|++=+=||.. -.+|+++++.++.|+.| -|++..+
T Consensus 107 R~FliD--------S~al~~~~~~i~~~~PD~iEiLPGi~-p~iI~~i~~~~~~PiIa---------------GGlI~~~ 162 (192)
T 3kts_A 107 RLFMID--------SSAYNKGVALIQKVQPDCIELLPGII-PEQVQKMTQKLHIPVIA---------------GGLIETS 162 (192)
T ss_dssp EEECCS--------HHHHHHHHHHHHHHCCSEEEEECTTC-HHHHHHHHHHHCCCEEE---------------ESSCCSH
T ss_pred EEEEEE--------cchHHHHHHHHhhcCCCEEEECCchh-HHHHHHHHHhcCCCEEE---------------ECCcCCH
Confidence 123333 2222222222221 346665669864 59999999999999987 6899988
Q ss_pred HHHHHHHHHHHHcCccEeehh
Q 014017 398 RVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 398 ~~~~EsL~~ikRAGAd~IiTY 418 (432)
+-+.++ ..|||+.|-|-
T Consensus 163 edv~~a----l~aGA~aVsTs 179 (192)
T 3kts_A 163 EQVNQV----IASGAIAVTTS 179 (192)
T ss_dssp HHHHHH----HTTTEEEEEEC
T ss_pred HHHHHH----HHcCCeEEEeC
Confidence 766665 57899999874
No 230
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=55.14 E-value=22 Score=35.26 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=39.1
Q ss_pred hhcCCcEEEEcCCC----chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 343 ESEGADILLVKPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 343 i~EGAD~lMVKPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++.|+|+|.+=.+. .++|.|+.+|+.+++||.+-+|. + .|....+.++|||+|+.
T Consensus 114 ~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~---------------t-----~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 114 VEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVV---------------T-----EEATKELIENGADGIKV 172 (361)
T ss_dssp HHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEEC---------------S-----HHHHHHHHHTTCSEEEE
T ss_pred HHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCC---------------C-----HHHHHHHHHcCcCEEEE
Confidence 56899999873221 46899999999999999985552 1 12234556789998874
No 231
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=54.45 E-value=81 Score=30.35 Aligned_cols=80 Identities=20% Similarity=0.116 Sum_probs=49.6
Q ss_pred cccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCc------------------hhHHHHHHHhhCCCCeEEE---
Q 014017 318 KKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLP------------------YLDVIRLLRDKYPLPIAAY--- 376 (432)
Q Consensus 318 RktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~------------------YLDII~~vk~~~~lPvaaY--- 376 (432)
...|++- -.|.+. ++.+ ++-|+|.|.+=-+.. ..++|+.+|+. .+.+-+|
T Consensus 74 ~~~~~~l----~~~~~~-i~~a---~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~-G~~v~~~i~~ 144 (307)
T 1ydo_A 74 GVTYAAL----VPNQRG-LENA---LEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKA-NLTTRAYLST 144 (307)
T ss_dssp TCEEEEE----CCSHHH-HHHH---HHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHT-TCEEEEEEEC
T ss_pred CCeEEEE----eCCHHh-HHHH---HhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEE
Confidence 3466664 457554 3322 335899887643332 24666666663 5556433
Q ss_pred EechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 377 QVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 377 qVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
.+|.||. |-.|. +.++|....+..+|||.|
T Consensus 145 ~~~~~~~--------~~~~~-~~~~~~~~~~~~~Ga~~i 174 (307)
T 1ydo_A 145 VFGCPYE--------KDVPI-EQVIRLSEALFEFGISEL 174 (307)
T ss_dssp TTCBTTT--------BCCCH-HHHHHHHHHHHHHTCSCE
T ss_pred EecCCcC--------CCCCH-HHHHHHHHHHHhcCCCEE
Confidence 4566763 44565 477999999999999976
No 232
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=54.03 E-value=30 Score=27.65 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|+|++= |.+.-+++++.+++.. .+|+..+.-+.+-.....+.+.|..+
T Consensus 33 ~~~~~~a~~~l~---~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~ 100 (155)
T 1qkk_A 33 FASATEALAGLS---ADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYD 100 (155)
T ss_dssp ESCHHHHHHTCC---TTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHHHHHHHHTTCCE
T ss_pred ECCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHHHHHHHhcCCCe
Confidence 456667665443 2457888875 5666789999999876 69999998877777777788888754
No 233
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=53.96 E-value=53 Score=26.13 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh-----CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK-----YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~-----~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|+|++= |++.=+++++.+|+. ..+|+....-.++-..+..+.+.|..+
T Consensus 44 ~~~~~~al~~~~---~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~ 115 (143)
T 3m6m_D 44 VNGAEQVLDAMA---EEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARA 115 (143)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhh
Confidence 457777776654 3568999986 777778999999853 248999887766666667777777644
No 234
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=53.91 E-value=42 Score=26.03 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHhchh--cCCcEEEEc---CCCchhHHHHHHHh----h-CCCCeEEEEechhhHHHHHHHHCC
Q 014017 329 YANYREALVEAQADES--EGADILLVK---PGLPYLDVIRLLRD----K-YPLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 329 p~N~~EAlre~~~Di~--EGAD~lMVK---Pal~YLDII~~vk~----~-~~lPvaaYqVSGEYaMikaAa~~G 392 (432)
..|..||+........ +..|+|++= |.+.=+++++.+|+ . ..+|+....-+.+......+.+.|
T Consensus 41 ~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g 114 (146)
T 3ilh_A 41 VTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASD 114 (146)
T ss_dssp ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcC
Confidence 5588888877654222 458999986 66677999999998 3 368888876666666666677777
No 235
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=53.82 E-value=21 Score=34.78 Aligned_cols=99 Identities=23% Similarity=0.402 Sum_probs=60.5
Q ss_pred hhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCc----------hhHHHHHHHhhCCCC
Q 014017 309 LDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLP----------YLDVIRLLRDKYPLP 372 (432)
Q Consensus 309 a~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~----------YLDII~~vk~~~~lP 372 (432)
++-+| +|-|--.|+ +.++|+..+..-+++|||||=|= |+.. .+-+|+.+++. ++|
T Consensus 29 lNvTPDSFsdgg~~~--------~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~-~vp 99 (294)
T 2y5s_A 29 LNATPDSFSDGGRFL--------ARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPL-NVP 99 (294)
T ss_dssp EECCC------------------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGG-CSC
T ss_pred EeCCCCCCCCCCCcC--------CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCe
Confidence 45566 365544442 23789999999999999999874 6644 36677777766 889
Q ss_pred eEEEEechhhHHHHHHHHCC--Cchh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 373 IAAYQVSGEYSMIKAGGALK--MIDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G--~id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|..= |=....+++|.++| +||. .+ .-|.+.-.++.|+-+|+...
T Consensus 100 iSID--T~~~~Va~aAl~aGa~iINdVsg~~-d~~m~~~~a~~~~~vVlmh~ 148 (294)
T 2y5s_A 100 LSID--TYKPAVMRAALAAGADLINDIWGFR-QPGAIDAVRDGNSGLCAMHM 148 (294)
T ss_dssp EEEE--CCCHHHHHHHHHHTCSEEEETTTTC-STTHHHHHSSSSCEEEEECC
T ss_pred EEEE--CCCHHHHHHHHHcCCCEEEECCCCC-chHHHHHHHHhCCCEEEECC
Confidence 8652 44556777777776 3331 11 11334456788998888654
No 236
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=53.72 E-value=15 Score=33.87 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=15.5
Q ss_pred hhHHHHHHHhhCCCCeEE
Q 014017 358 YLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 358 YLDII~~vk~~~~lPvaa 375 (432)
++++++++|+.+++|+..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~ 99 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVL 99 (262)
T ss_dssp HHHHHHHHGGGCSSCEEE
T ss_pred HHHHHHHHHhcCCCCEEE
Confidence 468899999999999876
No 237
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=53.36 E-value=52 Score=32.26 Aligned_cols=112 Identities=15% Similarity=0.226 Sum_probs=70.0
Q ss_pred cccchhhh---hhhhCCC-CCCCc--ccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCch------hHH
Q 014017 299 SSFYGPFR---EALDSNP-RFGDK--KTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLPY------LDV 361 (432)
Q Consensus 299 SsfYGPFR---dAa~Sap-~~gDR--ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~Y------LDI 361 (432)
-.||.|-+ +.++-+| +|-|- ..|. | +- +.++..+..=+++|||||=|. |+... +++
T Consensus 41 ~~~~~~p~i~m~I~n~tpdsf~d~i~~~~~-~----~~--~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~v 113 (310)
T 2h9a_B 41 GEMPNPPRFALEVFDTPPTDWPDILVEPFK-D----VI--NDPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEV 113 (310)
T ss_dssp SCCCSCCEEEEEEESSCCSSCCHHHHGGGT-T----TT--TCHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHH
T ss_pred cCCCCCCeEEEEEeeCCCcccchhhhhhhc-c----HH--HHHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHH
Confidence 34555555 5556666 45444 3443 1 10 245666666679999999987 44221 789
Q ss_pred HHHHHhhCCCCeEEEEec----hhhHHHHHHHHCCC-----chh---hHHHHHHHHHHHHcCccEeehhc
Q 014017 362 IRLLRDKYPLPIAAYQVS----GEYSMIKAGGALKM-----IDE---QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 362 I~~vk~~~~lPvaaYqVS----GEYaMikaAa~~G~-----id~---~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|+.+++.+++|+..+- | =.-..+++|.++|. |+. ++ .-+.+...++.|+-+|+...
T Consensus 114 V~~v~~~~~vplsI~D-T~~~~~~~~V~eaal~aga~~k~iINdvs~~~-~~~~~~~aa~~g~~vv~m~~ 181 (310)
T 2h9a_B 114 CKAVADAIDVPLMIIG-CGVEEKDAEIFPVIGEALSGRNCLLSSATKDN-YKPIVATCMVHGHSVVASAP 181 (310)
T ss_dssp HHHHHHHCSSCEEEEC-CSCHHHHHHHHHHHHHHTTTSCCEEEEECTTT-HHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHhCCceEEEEC-CCCCCCCHHHHHHHHHhCCCCCCEEEECCCCc-cHHHHHHHHHhCCCEEEECh
Confidence 9999999999996622 3 33466777777653 431 21 23444556888999988765
No 238
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=53.31 E-value=24 Score=33.97 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=69.0
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||- +.++.|.+ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 21 ~~dg~iD~-~~l~~lv~---~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpviaGv----------- 84 (309)
T 3fkr_A 21 ADTGDLDL-ASQKRAVD---FMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVA-GRVPVIVTT----------- 84 (309)
T ss_dssp CTTSSBCH-HHHHHHHH---HHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEEC-----------
T ss_pred CcCCCcCH-HHHHHHHH---HHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC-CCCcEEEec-----------
Confidence 35678874 44444444 456899998776543 2345566666666543 256665432
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-----------hHHHHHHHhhCCCCeE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-----------LDVIRLLRDKYPLPIA 374 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----------LDII~~vk~~~~lPva 374 (432)
| -.|.+|++..+..=.+-|||.+||=|- .| .+=.+.+.+..++||.
T Consensus 85 ----------g------------~~~t~~ai~la~~A~~~Gadavlv~~P-yy~~~~~~s~~~l~~~f~~va~a~~lPii 141 (309)
T 3fkr_A 85 ----------S------------HYSTQVCAARSLRAQQLGAAMVMAMPP-YHGATFRVPEAQIFEFYARVSDAIAIPIM 141 (309)
T ss_dssp ----------C------------CSSHHHHHHHHHHHHHTTCSEEEECCS-CBTTTBCCCHHHHHHHHHHHHHHCSSCEE
T ss_pred ----------C------------CchHHHHHHHHHHHHHcCCCEEEEcCC-CCccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 1 235678887777667789999999774 23 2234466678899999
Q ss_pred EEEec
Q 014017 375 AYQVS 379 (432)
Q Consensus 375 aYqVS 379 (432)
-|++-
T Consensus 142 lYn~P 146 (309)
T 3fkr_A 142 VQDAP 146 (309)
T ss_dssp EEECG
T ss_pred EEeCC
Confidence 99984
No 239
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=53.28 E-value=23 Score=27.78 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CC--CchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PG--LPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pa--l~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|+|++- |. +.-+++++.+|+.. .+|+....-..+......+.+.|..+
T Consensus 36 ~~~~~~a~~~l~---~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 105 (136)
T 3kto_A 36 FASAESFMRQQI---SDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRAMRASAAD 105 (136)
T ss_dssp ESSHHHHTTSCC---CTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHh---ccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHHHHcChHH
Confidence 446666665432 2447888886 44 55589999999876 69999887776666666666666544
No 240
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=53.13 E-value=19 Score=34.68 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=71.3
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+ .++.|. --+.++|+|-|.+.+. .+=|...++.+.+.. .+++|+.-.
T Consensus 21 ~~dg~iD~~-~l~~lv---~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~--grvpViaGv----------- 83 (313)
T 3dz1_A 21 HDDGKIDDV-SIDRLT---DFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA--KSMQVIVGV----------- 83 (313)
T ss_dssp CTTSCBCHH-HHHHHH---HHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC--TTSEEEEEC-----------
T ss_pred CCCCCcCHH-HHHHHH---HHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc--CCCcEEEec-----------
Confidence 346788743 344443 3456799998776543 334667777777766 467776532
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhhCC--CCeEEEE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKYP--LPIAAYQ 377 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~~~--lPvaaYq 377 (432)
| -.|.+|++..+..=.+-|||.+||=|-..+ .+=.+.+.+.++ +||..|+
T Consensus 84 ----------g------------~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn 141 (313)
T 3dz1_A 84 ----------S------------APGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQD 141 (313)
T ss_dssp ----------C------------CSSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred ----------C------------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEe
Confidence 1 235678887777666779999999765422 334456667777 9999999
Q ss_pred ech
Q 014017 378 VSG 380 (432)
Q Consensus 378 VSG 380 (432)
+=|
T Consensus 142 ~P~ 144 (313)
T 3dz1_A 142 YPL 144 (313)
T ss_dssp CHH
T ss_pred Ccc
Confidence 844
No 241
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=53.11 E-value=26 Score=33.25 Aligned_cols=51 Identities=4% Similarity=-0.039 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCch--------hHHHHHHHhhCCCCeEEEEech
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPY--------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~Y--------LDII~~vk~~~~lPvaaYqVSG 380 (432)
.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-|
T Consensus 75 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~ 133 (288)
T 2nuw_A 75 LNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPA 133 (288)
T ss_dssp SCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECch
Confidence 36788888777667789999999654322 2233466678899999999744
No 242
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=52.89 E-value=57 Score=33.52 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
+..+.++.+++.|+..|.|-.. + | ....+...|+.+|+++|++.|+.
T Consensus 231 d~~~~a~~l~~aG~d~I~id~a---~-----g-----~~~~~~~~i~~ir~~~p~~~Vi~ 277 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVLLIDSS---H-----G-----HSEGVLQRIRETRAAYPHLEIIG 277 (496)
T ss_dssp CCHHHHHHHHHTTCSEEEEECS---C-----T-----TSHHHHHHHHHHHHHCTTCCEEE
T ss_pred chHHHHHHHHhccCceEEeccc---c-----c-----cchHHHHHHHHHHHHCCCceEEE
Confidence 3588899999999997766421 1 1 11235579999999999987775
No 243
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=52.89 E-value=30 Score=31.68 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=71.3
Q ss_pred CchHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCC--C--CcccccccccCCCCCHHHHHHHHHhchh
Q 014017 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRF--G--DKKTYVIRVIELYANYREALVEAQADES 344 (432)
Q Consensus 270 DGrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~--g--DRktYQmd~~~~p~N~~EAlre~~~Di~ 344 (432)
++-+..+-+.|.+.|. .+|.|.||..... .-+|+. .|.+ + -......+ |...-+.+ ..
T Consensus 125 ~~~~~~v~~~l~~~~~~~~v~i~Sf~~~~l----~~~~~~---~p~~~~~~l~~~~~~~~----~~~~~~~~------~~ 187 (258)
T 2o55_A 125 SGDHQRLLLLVEKYHMQERVDYCSFHHEAL----AHLKAL---CPDVKITYLFNYMGQPT----PLDFVEQA------CY 187 (258)
T ss_dssp SSHHHHHHHHHHTTTCGGGEEEEESSHHHH----HHHHHH---CTTCEEEEECCTTSCCC----CTTHHHHH------HH
T ss_pred hHHHHHHHHHHHHcCCCCCEEEEeCCHHHH----HHHHHH---CCCCcEEEEEeCCCCCC----HHHHHHHH------Hh
Confidence 5667778888888877 4566666653221 112222 2321 0 00011123 32221111 13
Q ss_pred cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHH
Q 014017 345 EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 424 (432)
Q Consensus 345 EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a 424 (432)
-|+|.+-+.-...--++|+.+++ .+++|.+|.|-+ ++.+. |.+..+.+.|+|.|+|-+-..+.
T Consensus 188 ~~~~~v~~~~~~~~~~~v~~~~~-~G~~v~~wTv~~-------------~~n~~---~~~~~l~~~GvdgI~TD~p~~~~ 250 (258)
T 2o55_A 188 GDANGVSMLFHYLTKEQVCTAHE-KGLSVTVWMPWI-------------FDDSE---EDWKKCLELQVDLICSNYPFGLM 250 (258)
T ss_dssp TTCSEEEEEGGGCCHHHHHHHHH-TTCEEEEECCTT-------------CCCCH---HHHHHHHHHTCSEEEESCHHHHH
T ss_pred cCCeEEecChhhcCHHHHHHHHH-CCCEEEEeeCCC-------------CCCCH---HHHHHHHHcCCCEEEeCCHHHHH
Confidence 57887765433223467888775 689999999932 22222 33444567899999999998888
Q ss_pred HHHhc
Q 014017 425 RCLCG 429 (432)
Q Consensus 425 ~wL~~ 429 (432)
++|++
T Consensus 251 ~~l~~ 255 (258)
T 2o55_A 251 NFLSN 255 (258)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 88864
No 244
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=52.80 E-value=24 Score=35.66 Aligned_cols=55 Identities=24% Similarity=0.571 Sum_probs=37.7
Q ss_pred hhcCCcEEEEcC--CCc--hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 343 ESEGADILLVKP--GLP--YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 343 i~EGAD~lMVKP--al~--YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++.|+|.|.+=- +.+ .+++|+.+|+.+ ++||.+ | +..+.+ ....+..+|||.|..
T Consensus 246 ~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~----g-----------~~~t~e-----~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 246 VKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVA----G-----------NVATPE-----GTEALIKAGADAVKV 305 (494)
T ss_dssp HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEE----E-----------EECSHH-----HHHHHHHTTCSEEEE
T ss_pred HHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEe----C-----------CcCCHH-----HHHHHHHcCCCEEEE
Confidence 568999999732 223 789999999999 699875 1 122222 224556789999874
No 245
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=52.47 E-value=28 Score=33.11 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCch--------hHHHHHHHhhCCCCeEEEEe
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPY--------LDVIRLLRDKYPLPIAAYQV 378 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~Y--------LDII~~vk~~~~lPvaaYqV 378 (432)
.|.+|+++.+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++
T Consensus 75 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 131 (293)
T 1w3i_A 75 LNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNY 131 (293)
T ss_dssp SCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEEC
Confidence 36788888887777789999998554322 22334666788999999996
No 246
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=52.36 E-value=29 Score=26.77 Aligned_cols=64 Identities=27% Similarity=0.306 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|+|++= |++.-+++++.+++.. .+|+....-+++......+.+.|..+
T Consensus 33 ~~~~~~a~~~~~---~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 100 (136)
T 1mvo_A 33 ASDGEEALKKAE---TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADD 100 (136)
T ss_dssp ESSHHHHHHHHH---HHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCE
T ss_pred ecCHHHHHHHHh---hcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCE
Confidence 457778876654 2457999886 5556789999999864 69999988878777777777777654
No 247
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=52.32 E-value=17 Score=37.12 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=39.0
Q ss_pred hhcCCcEEEEcCCCc----hhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 343 ESEGADILLVKPGLP----YLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 343 i~EGAD~lMVKPal~----YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
++.|+|+|.+=-+.- .+++|+.+|+.+ ++||.+-.| .+ .|....+.++|||.|+.
T Consensus 264 ~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---------------~t-----~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 264 TQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---------------VT-----AAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---------------CS-----HHHHHHHHHHTCSEEEE
T ss_pred HHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---------------ch-----HHHHHHHHHcCCCEEEE
Confidence 558999999833332 469999999999 899987555 11 23345566789998843
No 248
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=52.23 E-value=34 Score=31.73 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=42.2
Q ss_pred HHHHHhchh--cCCcEEEE-------cCC-Cch-------hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhH
Q 014017 336 LVEAQADES--EGADILLV-------KPG-LPY-------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 336 lre~~~Di~--EGAD~lMV-------KPa-l~Y-------LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~ 398 (432)
..++..-++ .|+|.|-+ +++ ..| .++|+.+++..++||.+=- + .+|.+.
T Consensus 113 ~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~-~-----------~~~~~~-- 178 (311)
T 1ep3_A 113 YVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKL-S-----------PNVTDI-- 178 (311)
T ss_dssp HHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEE-C-----------SCSSCS--
T ss_pred HHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEE-C-----------CChHHH--
Confidence 334444444 68998855 232 223 8999999999899997543 2 134332
Q ss_pred HHHHHHHHHHHcCccEeeh
Q 014017 399 VMMESLMCLRRAGADIILT 417 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiT 417 (432)
.|....+..+|+|.|+.
T Consensus 179 --~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 179 --VPIAKAVEAAGADGLTM 195 (311)
T ss_dssp --HHHHHHHHHTTCSEEEE
T ss_pred --HHHHHHHHHcCCCEEEE
Confidence 34556778899998875
No 249
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=52.21 E-value=41 Score=25.19 Aligned_cols=61 Identities=8% Similarity=0.047 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcC----CCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCC
Q 014017 329 YANYREALVEAQADESEGADILLVKP----GLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKP----al~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
..|..||+..... +..|++++=- .+.-+++++.+++. ..+|+..+ -+.+-.....+.+.|.
T Consensus 35 ~~~~~~a~~~~~~---~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~ 102 (127)
T 2gkg_A 35 TTDGKGSVEQIRR---DRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKLKAHA 102 (127)
T ss_dssp ECCHHHHHHHHHH---HCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHSTTCC
T ss_pred ecCHHHHHHHHHh---cCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHHHhCc
Confidence 5577888776643 4589999853 45568999999986 46999998 6665555555555554
No 250
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=52.14 E-value=53 Score=25.35 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC---CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ....|+|++= |++.=+++++.+|+.. .+|+....-.++......+.+.|..+
T Consensus 36 ~~~~~~a~~~~~~--~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~ 106 (129)
T 3h1g_A 36 AEHGVEAWEKLDA--NADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNN 106 (129)
T ss_dssp ESSHHHHHHHHHH--CTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCE
T ss_pred eCCHHHHHHHHHh--CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHcCccE
Confidence 4466777766542 2346888875 6666689999999742 68999987766666666666665543
No 251
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=51.91 E-value=35 Score=32.92 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhchhcCCcEEEEc-----CCCc----------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCC--
Q 014017 331 NYREALVEAQADESEGADILLVK-----PGLP----------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKM-- 393 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVK-----Pal~----------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~-- 393 (432)
+.++|+..+..=+++|||+|=|= |+-. .+.+|+.+++.+++||..= |=....+++|.++|.
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSID--T~~~~va~aAl~aGa~i 113 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVD--TSKPEVIRESAKVGAHI 113 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE--CCCHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEe--CCCHHHHHHHHHcCCCE
Confidence 34889999999999999999774 4422 3778888988889998652 333456666666652
Q ss_pred chhhH--HHHHHHHHHHHcCccEeehhc
Q 014017 394 IDEQR--VMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 394 id~~~--~~~EsL~~ikRAGAd~IiTYf 419 (432)
|+.=. ..-|.+.-+++.|+-+|+...
T Consensus 114 INdvsg~~d~~~~~~~a~~~~~vVlmh~ 141 (282)
T 1aj0_A 114 INDIRSLSEPGALEAAAETGLPVCLMHM 141 (282)
T ss_dssp EEETTTTCSTTHHHHHHHHTCCEEEECC
T ss_pred EEECCCCCCHHHHHHHHHhCCeEEEEcc
Confidence 22100 011334445677888877654
No 252
>3qfw_A Ribulose-1,5-bisphosphate carboxylase/oxygenase L subunit; structural genomics, PSI-2, protein structure initiative; 1.79A {Rhodopseudomonas palustris}
Probab=51.51 E-value=19 Score=36.49 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccc
Q 014017 242 DETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTY 321 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktY 321 (432)
=-|-+.+++++..++..|.|+|= |.+++.+-+-|-+--.+.-+. ---+.|-+.+ |.+|-|
T Consensus 142 GLs~~~~a~~~ye~~~GGlDfiK----------------DDE~l~~qpf~p~~eR~~~~~-eai~ra~~eT---Ge~k~y 201 (378)
T 3qfw_A 142 GLSPAALASIAHQLALGGVDLIK----------------DDHGLADQAFSPFAERAAAVG-KAVREANAAR---GGRTLY 201 (378)
T ss_dssp TSCHHHHHHHHHHHHHTTCSEEE----------------ECTTCSSCTTSCHHHHHHHHH-HHHHHHHHHH---TCCCEE
T ss_pred cCCHHHHHHHHHHHHhcCCCccc----------------CCcCcCCCCcccHHHHHHHHH-HHHHHHHHhh---CCccEE
Confidence 34667899999999999999973 344443333333322221100 0011112222 778889
Q ss_pred cccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHH
Q 014017 322 VIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 400 (432)
Q Consensus 322 Qmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~ 400 (432)
-.|+. +..+|.++.++.=.+.|++++||=+-..=++.++.+++.+ ++|+-+ |=-|- ++ .|+-. - .+
T Consensus 202 ~~NiT---a~~~em~~ra~~a~e~G~~~~mvd~~~~G~~a~~~l~r~~p~~~lh~-HrA~~------ga-hGi~~-~-~v 268 (378)
T 3qfw_A 202 APNIS---GTLDDMRRQLGVIRDEGIGAVLVAPMIVGVSNFHAIVKEAAGLVVVA-HPAMA------GA-AKIAA-P-LL 268 (378)
T ss_dssp ECBCC---SSHHHHHHHHHHHHHHTCCEEEECHHHHCHHHHHHHHTTCTTCEEEE-CCTTC----------CBCH-H-HH
T ss_pred EeecC---CCHHHHHHHHHHHHHcCCCEEEEeccccCHHHHHHHHHhCCCCEEEe-CcCch------hh-ccCcH-H-HH
Confidence 88843 4578888888888899999999987544478999999888 888754 32221 11 45421 1 12
Q ss_pred HHHHHHHHHcCccEeeh
Q 014017 401 MESLMCLRRAGADIILT 417 (432)
Q Consensus 401 ~EsL~~ikRAGAd~IiT 417 (432)
+ -+.+|=+|+|.|++
T Consensus 269 l--~Kl~RLaG~D~ih~ 283 (378)
T 3qfw_A 269 L--GRLFRLFGADATVF 283 (378)
T ss_dssp H--THHHHHHTCSEEEE
T ss_pred H--HHHHHHhCCCccee
Confidence 2 23567789999975
No 253
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=51.45 E-value=34 Score=28.73 Aligned_cols=64 Identities=19% Similarity=-0.008 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|+|++= |++.=+++++.+++.. .+||....-..+......|.+.|..|
T Consensus 37 ~~~~~~al~~~~---~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~a~~~Ga~~ 104 (184)
T 3rqi_A 37 AHNKDEALKLAG---AEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIATAVQAVKDGADN 104 (184)
T ss_dssp ECSHHHHHHHHT---TSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHHTCSE
T ss_pred eCCHHHHHHHHh---hCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHhCHHH
Confidence 557788877653 3457888875 6677799999999866 59999998888888888888888754
No 254
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=51.42 E-value=37 Score=26.54 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCc----hhHHHHHHHh--hC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLP----YLDVIRLLRD--KY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~----YLDII~~vk~--~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+...... +..|+|++=-.++ -+++++.+|+ .. .+|+....-..+-..+..+.+.|..
T Consensus 35 ~~~~~~a~~~l~~~--~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 105 (140)
T 3lua_A 35 VENLKKFYSIFKDL--DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVS 105 (140)
T ss_dssp ECSHHHHHTTTTTC--CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCS
T ss_pred ECCHHHHHHHHhcC--CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 45667776655422 5678999875555 6889999998 44 6999998776666666666666654
No 255
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=51.27 E-value=27 Score=33.02 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=64.2
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhh
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
||.||-+ .++.++ --+.++|+|-|.+.+. .+=|...+|.+.+..+= |+. |
T Consensus 13 dg~iD~~-~l~~lv---~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g----vi~----------G---- 70 (286)
T 2r91_A 13 GGRLDPE-LFANHV---KNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR----VIV----------Q---- 70 (286)
T ss_dssp TTEECHH-HHHHHH---HHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS----EEE----------E----
T ss_pred CCccCHH-HHHHHH---HHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC----EEE----------e----
Confidence 5777743 344443 3456789998876553 22466666766665431 221 1
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch--------hHHHHHHHhhCCCCeEEEEec
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY--------LDVIRLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y--------LDII~~vk~~~~lPvaaYqVS 379 (432)
+ | -.|.+|++..+..=.+-|||.+||=|-..| .+-.+.+.+.+++||..|++-
T Consensus 71 -v------g------------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 71 -V------A------------SLNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp -C------C------------CSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred -e------C------------CCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 1 1 236688887777666789999999654322 223346667889999999963
No 256
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=51.25 E-value=14 Score=35.23 Aligned_cols=107 Identities=20% Similarity=0.280 Sum_probs=67.5
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
+|| || -+.++.|++ -+.++|+|-+.+.+. .+=|...++.+.+..+ .+++|+.-..
T Consensus 16 ~dg-iD-~~~l~~lv~---~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~-gr~pvi~Gvg----------- 78 (291)
T 3a5f_A 16 NTG-VD-FDKLSELIE---WHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVN-KRIPVIAGTG----------- 78 (291)
T ss_dssp SSS-BC-HHHHHHHHH---HHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT-TSSCEEEECC-----------
T ss_pred CCC-cC-HHHHHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeCC-----------
Confidence 467 65 444444444 456689998876552 2347777777776654 2566664321
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch----hHHH---HHHHhhCCCCeEEEEec
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY----LDVI---RLLRDKYPLPIAAYQVS 379 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y----LDII---~~vk~~~~lPvaaYqVS 379 (432)
-.|.+|+++.+..=.+-|||.+||=|-..| =.++ +.+.+.+++||.-|++-
T Consensus 79 ----------------------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3a5f_A 79 ----------------------SNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVP 136 (291)
T ss_dssp ----------------------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECH
T ss_pred ----------------------cccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 235678887777666779999999654322 2333 35556778999999974
Q ss_pred h
Q 014017 380 G 380 (432)
Q Consensus 380 G 380 (432)
|
T Consensus 137 ~ 137 (291)
T 3a5f_A 137 G 137 (291)
T ss_dssp H
T ss_pred c
Confidence 3
No 257
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=51.17 E-value=91 Score=29.62 Aligned_cols=159 Identities=16% Similarity=0.208 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
..+.++...+.|...+-+- .+ .+--.|+ ..-++.+|+.+ ++-|+ ..| .
T Consensus 74 p~~~A~~y~~~GA~~isvl---td-~~~f~Gs---------~~~l~~ir~~v-~lPvl-----------------~kd-f 121 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVV---TE-QRRFQGS---------LDDLDAVRASV-SIPVL-----------------RKD-F 121 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEE---CC-GGGHHHH---------HHHHHHHHHHC-SSCEE-----------------EES-C
T ss_pred HHHHHHHHHHcCCCEEEEe---cC-hhhcCCC---------HHHHHHHHHhC-CCCEE-----------------ECc-c
Confidence 5777778888999988652 11 1100111 13667777765 33332 112 2
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecC--CCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSP--SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAP--SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
|-|+..++.. ..+|||.|.- +++-+.++..+.+...+.|.. + |
T Consensus 122 iid~~qv~~A-------~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~-~--l------------------------- 166 (272)
T 3qja_A 122 VVQPYQIHEA-------RAHGADMLLLIVAALEQSVLVSMLDRTESLGMT-A--L------------------------- 166 (272)
T ss_dssp CCSHHHHHHH-------HHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCE-E--E-------------------------
T ss_pred ccCHHHHHHH-------HHcCCCEEEEecccCCHHHHHHHHHHHHHCCCc-E--E-------------------------
Confidence 3345444332 2599999874 444455666666666666652 2 1
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCC-----CchhHHHHHHHhhC--CCCeEEEEechhhHHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLVKPG-----LPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPa-----l~YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa 389 (432)
.. ..|.+|+.+.. +.|||+|-|=+- ..-++.+.++.+.. ++|+.+ -||
T Consensus 167 ------ve----v~t~ee~~~A~----~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~pvVa--egG--------- 221 (272)
T 3qja_A 167 ------VE----VHTEQEADRAL----KAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIA--ESG--------- 221 (272)
T ss_dssp ------EE----ESSHHHHHHHH----HHTCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTSEEEE--ESC---------
T ss_pred ------EE----cCCHHHHHHHH----HCCCCEEEECCCcccccccCHHHHHHHHHhCcccCEEEE--ECC---------
Confidence 12 34556754433 459999999652 22367788888776 588776 333
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.-+. |-+..++++|||.++-
T Consensus 222 ---I~t~-----edv~~l~~~GadgvlV 241 (272)
T 3qja_A 222 ---VRGT-----ADLLAYAGAGADAVLV 241 (272)
T ss_dssp ---CCSH-----HHHHHHHHTTCSEEEE
T ss_pred ---CCCH-----HHHHHHHHcCCCEEEE
Confidence 2222 3455677888887764
No 258
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=51.10 E-value=93 Score=27.32 Aligned_cols=77 Identities=22% Similarity=0.199 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+.... ++..|+|++= |.+.=+++++.+|+.. .+|+....-..+-..+..|.+.|..|. .+
T Consensus 53 ~~~~~~al~~~~---~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~ 129 (250)
T 3r0j_A 53 ATNGAQALDRAR---ETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLE 129 (250)
T ss_dssp ESSHHHHHHHHH---HHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHH
T ss_pred ECCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHH
Confidence 457788877664 2468999987 6666789999999875 699999988888888888899987653 23
Q ss_pred HHHHHHHHHH
Q 014017 399 VMMESLMCLR 408 (432)
Q Consensus 399 ~~~EsL~~ik 408 (432)
-+.+.+..+.
T Consensus 130 ~L~~~i~~~~ 139 (250)
T 3r0j_A 130 EVVARLRVIL 139 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 259
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=50.96 E-value=50 Score=32.19 Aligned_cols=88 Identities=23% Similarity=0.340 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCchhH----------HHHHHHhhCCCCeEEEEechhhHHHHHHHH--CC--Cch
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPYLD----------VIRLLRDKYPLPIAAYQVSGEYSMIKAGGA--LK--MID 395 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~YLD----------II~~vk~~~~lPvaaYqVSGEYaMikaAa~--~G--~id 395 (432)
.+.++|+..+..-+++|||||=|=-+...+| +|+.+++..++|+..=. =....+++|.+ +| +|+
T Consensus 34 ~~~~~a~~~A~~~v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~~~vpisIDT--~~~~V~eaaL~~~~Ga~iIN 111 (300)
T 3k13_A 34 KKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPVMIDS--SKWEVIEAGLKCLQGKSIVN 111 (300)
T ss_dssp TCHHHHHHHHHHHHHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEEC--SCHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEeC--CCHHHHHHHHHhcCCCCEEE
Confidence 4568999999999999999999876655544 44444466789987653 35567788887 45 222
Q ss_pred h------hHHHHHHHHHHHHcCccEeehhc
Q 014017 396 E------QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 396 ~------~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
. +.-+.+.+.-+++.||-+|+-.+
T Consensus 112 dIs~~~~d~~~~~~~~l~a~~ga~vV~mh~ 141 (300)
T 3k13_A 112 SISLKEGEEVFLEHARIIKQYGAATVVMAF 141 (300)
T ss_dssp EECSTTCHHHHHHHHHHHHHHTCEEEEESE
T ss_pred eCCcccCChhHHHHHHHHHHhCCeEEEEee
Confidence 1 23334666778888999998776
No 260
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=50.72 E-value=20 Score=35.03 Aligned_cols=97 Identities=23% Similarity=0.374 Sum_probs=57.9
Q ss_pred hhCCC-CCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-----CCCc----------hhHHHHHHHhhCCCC
Q 014017 309 LDSNP-RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-----PGLP----------YLDVIRLLRDKYPLP 372 (432)
Q Consensus 309 a~Sap-~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-----Pal~----------YLDII~~vk~~~~lP 372 (432)
++-+| +|-|--.|. +.++|+..++.=+++|||||=|= |+.. .+-+|+.+++. ++|
T Consensus 35 lNvTPDSFsdgg~~~--------~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~-~vp 105 (294)
T 2dqw_A 35 LNLTPDSFSDGGRYL--------DPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSL-GVP 105 (294)
T ss_dssp EECCC---------------------CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTT-CSC
T ss_pred EeCCCCCCCCCCCCC--------CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhC-CCe
Confidence 45566 365554453 23678888999999999999774 5533 46788888876 899
Q ss_pred eEEEEechhhHHHHHHHHCC--Cchh-----hHHHHHHHHHHHHcCccEeehhc
Q 014017 373 IAAYQVSGEYSMIKAGGALK--MIDE-----QRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G--~id~-----~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
|.. =|=....+++|.++| +||. +. |.+.-.++.|+-+|+...
T Consensus 106 iSI--DT~~~~Va~aAl~aGa~iINdVsg~~d~---~m~~v~a~~~~~vVlmh~ 154 (294)
T 2dqw_A 106 VSV--DTRKPEVAEEALKLGAHLLNDVTGLRDE---RMVALAARHGVAAVVMHM 154 (294)
T ss_dssp EEE--ECSCHHHHHHHHHHTCSEEECSSCSCCH---HHHHHHHHHTCEEEEECC
T ss_pred EEE--ECCCHHHHHHHHHhCCCEEEECCCCCCh---HHHHHHHHhCCCEEEEcC
Confidence 865 244556777777766 4432 22 334456788999998665
No 261
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=50.63 E-value=39 Score=27.69 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhh--HHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEY--SMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEY--aMikaAa~~G~i 394 (432)
..|..||+.... ++..|+|++= |.+.=+++++.+++..+.|+....-..+. ..+..+.+.|..
T Consensus 57 ~~~~~~al~~l~---~~~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii~~s~~~~~~~~~~~~~~~~ga~ 124 (164)
T 3t8y_A 57 AKDGLEAVEKAI---ELKPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAV 124 (164)
T ss_dssp ESSHHHHHHHHH---HHCCSEEEECSSCSSSCHHHHHHHHHHHSCCEEEEEESSCCTTCHHHHHHHHTTCC
T ss_pred cCCHHHHHHHhc---cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCceEEEEecCCccchHHHHHHHHcCcC
Confidence 457788887665 3458999986 56667899999999888888877654442 244445555543
No 262
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=50.57 E-value=37 Score=29.84 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhchhcCCcE--EEEcCCC--ch----hHHHHHHHhhCCCCeEE
Q 014017 329 YANYREALVEAQADESEGADI--LLVKPGL--PY----LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~--lMVKPal--~Y----LDII~~vk~~~~lPvaa 375 (432)
+.+..|+++.+. +.|+|+ +-++.+. .+ +++++++++.++.|+.+
T Consensus 15 ~~~~~~~~~~~~---~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v 66 (220)
T 2fli_A 15 YANFASELARIE---ETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDC 66 (220)
T ss_dssp GGGHHHHHHHHH---HTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHH---HcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEE
Confidence 566677766664 468998 4555554 45 89999999988777655
No 263
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=50.54 E-value=43 Score=25.75 Aligned_cols=64 Identities=16% Similarity=0.159 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... ++..|+|++= |.+.-+++++.+|+.. .+|+....-..+-.....+.+.|..+
T Consensus 32 ~~~~~~a~~~~~---~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 99 (134)
T 3f6c_A 32 LTEGGSAVQRVE---TLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANG 99 (134)
T ss_dssp ESSSTTHHHHHH---HHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSE
T ss_pred cCCHHHHHHHHH---hcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCE
Confidence 345566666554 3468999886 6667799999999876 58988877666655666666666543
No 264
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=50.51 E-value=51 Score=31.14 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc-------CCCch-hHHHHHHHhhC-CCCeEE-EEec--hhhHHHHHHHHCCCchh
Q 014017 329 YANYREALVEAQADESEGADILLVK-------PGLPY-LDVIRLLRDKY-PLPIAA-YQVS--GEYSMIKAGGALKMIDE 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~Y-LDII~~vk~~~-~lPvaa-YqVS--GEYaMikaAa~~G~id~ 396 (432)
+.|..|+++.+. +-|||++=++ |.+.| .++|+.+|+.+ ++|+-+ -.|. +.| ++.++++|. |.
T Consensus 39 ~~~L~~~i~~l~---~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~aGA-d~ 112 (246)
T 3inp_A 39 LARLGDDVKAVL---AAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKAGA-TS 112 (246)
T ss_dssp GGGHHHHHHHHH---HTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHHTC-SE
T ss_pred hhhHHHHHHHHH---HcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHcCC-CE
Confidence 777888887775 4689987663 33444 79999999998 899877 3443 334 566666663 11
Q ss_pred -------hHHHHHHHHHHHHcCccEeeh
Q 014017 397 -------QRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 397 -------~~~~~EsL~~ikRAGAd~IiT 417 (432)
..-+.+.+..+|++|....++
T Consensus 113 itvH~Ea~~~~~~~i~~ir~~G~k~Gva 140 (246)
T 3inp_A 113 IVFHPEASEHIDRSLQLIKSFGIQAGLA 140 (246)
T ss_dssp EEECGGGCSCHHHHHHHHHTTTSEEEEE
T ss_pred EEEccccchhHHHHHHHHHHcCCeEEEE
Confidence 123567777777777766654
No 265
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=50.34 E-value=58 Score=29.06 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc-------CCCch-hHHHHHHHhhCCCCeEE
Q 014017 329 YANYREALVEAQADESEGADILLVK-------PGLPY-LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~Y-LDII~~vk~~~~lPvaa 375 (432)
+.|..|.++.+ ++-|+|+|=+- |.+.+ +++++++++.++.|+.+
T Consensus 22 ~~~~~~~i~~~---~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v 73 (230)
T 1rpx_A 22 FSKLGEQVKAI---EQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDV 73 (230)
T ss_dssp GGGHHHHHHHH---HHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHHHH---HHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEE
Confidence 44566666555 34699988663 33332 79999999988777654
No 266
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=50.19 E-value=30 Score=33.97 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=37.8
Q ss_pred HHHhchhc--CCcEEEEc--C--CCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHc
Q 014017 338 EAQADESE--GADILLVK--P--GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRA 410 (432)
Q Consensus 338 e~~~Di~E--GAD~lMVK--P--al~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRA 410 (432)
.+..-+++ |+|++-+= . ....+|.|+.+|+.+ ++||.+=.|. +. |....+.++
T Consensus 122 ~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~---------------t~-----e~A~~a~~a 181 (351)
T 2c6q_A 122 QLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVV---------------TG-----EMVEELILS 181 (351)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEEC---------------SH-----HHHHHHHHT
T ss_pred HHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCC---------------CH-----HHHHHHHHh
Confidence 33333455 99988763 1 123678999999999 7999865542 21 233455678
Q ss_pred CccEe
Q 014017 411 GADII 415 (432)
Q Consensus 411 GAd~I 415 (432)
|||+|
T Consensus 182 GaD~I 186 (351)
T 2c6q_A 182 GADII 186 (351)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 88888
No 267
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=50.16 E-value=31 Score=29.23 Aligned_cols=64 Identities=14% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|+|++= |++.-+++++.+++..+.|+....-.++......+.+.|..|
T Consensus 44 ~~~~~~al~~~~~---~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~~~ga~~ 110 (205)
T 1s8n_A 44 AGDGQEAVELAEL---HKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMA 110 (205)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTGGGSCEE
T ss_pred eCCHHHHHHHHhh---cCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHHhcCCcE
Confidence 5677888876542 457999876 666778999999998888999998888888888888888765
No 268
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=49.84 E-value=40 Score=38.46 Aligned_cols=219 Identities=16% Similarity=0.161 Sum_probs=122.4
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCc
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGV 238 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~ 238 (432)
..+.++.+.+.|+..|-+|..+. .---+.++++.+|+.. ..+..++| ||.|=-| +.
T Consensus 647 ~~~~i~~a~~~g~d~irif~sl~-------------~~~~~~~~i~~~~~~g--~~v~~~i~---~~~~~~d------~~ 702 (1165)
T 2qf7_A 647 VKYFVRQAAKGGIDLFRVFDCLN-------------WVENMRVSMDAIAEEN--KLCEAAIC---YTGDILN------SA 702 (1165)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTC-------------CGGGGHHHHHHHHHTT--CEEEEEEE---CCSCTTC------TT
T ss_pred HHHHHHHHHhcCcCEEEEEeeHH-------------HHHHHHHHHHHHHhcc--ceEEEEEE---EeccccC------CC
Confidence 45789999999999999996421 1125668999999886 45555555 5443111 11
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHHHC-CC--ccceeecchhhhccccchhhhh
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALDAE-GF--QHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aLD~~-Gf--~~v~ImSYSaKyASsfYGPFRd 307 (432)
....+++.+.+.+-...++|||+|+-.||.=. .|.++|+.++-. ++ +|+.=|+.+.-.+..-.| -+
T Consensus 703 -r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hnd~GlAvAn~laAv~aG--a~ 779 (1165)
T 2qf7_A 703 -RPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAG--VD 779 (1165)
T ss_dssp -SGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHHHHHHHHHHTT--CS
T ss_pred -CCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhC--CC
Confidence 01235667777777788999999999998752 466666665211 22 455556666555555555 22
Q ss_pred hhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhhC---CCC-----
Q 014017 308 ALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDKY---PLP----- 372 (432)
Q Consensus 308 Aa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~~---~lP----- 372 (432)
.++++-. +|-| +.|.+ -|.+..+.... |-| +++-. -+.+.+++..+ .-+
T Consensus 780 ~vd~ti~GlGe~-~Gn~~--------le~vv~~L~~~--g~~-----tgidl~~L~~~s~~~~~~~~~~~~~~~~~~~~~ 843 (1165)
T 2qf7_A 780 AVDAAMDALSGN-TSQPC--------LGSIVEALSGS--ERD-----PGLDPAWIRRISFYWEAVRNQYAAFESDLKGPA 843 (1165)
T ss_dssp EEEEBCGGGCSB-TSCCB--------HHHHHHHHTTS--TTC-----CCCCHHHHHHHHHHHHHHHGGGGGGCCCCCSCC
T ss_pred EEEecccccCCC-ccchh--------HHHHHHHHHhc--CCC-----ccccHHHHHHHHHHHHHHhhhccCCCCCccCCc
Confidence 3344332 4544 66665 45555555442 333 33211 12223333332 111
Q ss_pred --eEEEEech-hhHHH-HHHHHCCCchhhHHHHHHHHHH-HHcCccEeehhcH
Q 014017 373 --IAAYQVSG-EYSMI-KAGGALKMIDEQRVMMESLMCL-RRAGADIILTYFA 420 (432)
Q Consensus 373 --vaaYqVSG-EYaMi-kaAa~~G~id~~~~~~EsL~~i-kRAGAd~IiTYfA 420 (432)
+..+|+.| -|+-+ ..+.+.|+.|.-.-++|-+... +..|=-.-+|-+-
T Consensus 844 ~~v~~~~~pGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~vtp~S 896 (1165)
T 2qf7_A 844 SEVYLHEMPGGQFTNLKEQARSLGLETRWHQVAQAYADANQMFGDIVKVTPSS 896 (1165)
T ss_dssp TTHHHHCCCHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCCCSTTHH
T ss_pred cceEeccCCCccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHcCCCccCCChh
Confidence 22344444 34444 4467789887556666666666 3445444455443
No 269
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=49.75 E-value=36 Score=32.67 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=26.2
Q ss_pred hhcCCcEEEEcC---C-----CchhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVKP---G-----LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKP---a-----l~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+|+|.|-. + .+-+++++++++..++||.+
T Consensus 127 ~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPVia 167 (332)
T 2z6i_A 127 EKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIA 167 (332)
T ss_dssp HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEE
T ss_pred HHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEE
Confidence 357999999943 1 34579999999999999875
No 270
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=49.40 E-value=74 Score=25.58 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
..|..||+..+... ...-|+|++= |.+.-+++++.+|+.. .+|+..+.-..+-..+..+.+.|.
T Consensus 67 ~~~~~~al~~l~~~-~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~g~ 134 (157)
T 3hzh_A 67 AADGEEAVIKYKNH-YPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGA 134 (157)
T ss_dssp ESSHHHHHHHHHHH-GGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHhc-CCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHHHcCC
Confidence 56778887766531 1257999986 5666789999999876 599988766555555555555554
No 271
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=49.38 E-value=37 Score=31.13 Aligned_cols=65 Identities=8% Similarity=0.158 Sum_probs=46.7
Q ss_pred cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHH
Q 014017 345 EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 424 (432)
Q Consensus 345 EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a 424 (432)
-|++.+-+.-...--+.|+.+++ .+++|.+|.|- .. |.+..+.+.|+|.|||-+-..+.
T Consensus 186 ~~~~~i~~~~~~~~~~~v~~~~~-~G~~v~~WTvn----------------~~----~~~~~l~~~GVdgIiTD~P~~~~ 244 (252)
T 3qvq_A 186 LDCAGLHIHQSFFDVQQVSDIKA-AGYKVLAFTIN----------------DE----SLALKLYNQGLDAVFSDYPQKIQ 244 (252)
T ss_dssp HTCSEEEEEGGGCCHHHHHHHHH-TTCEEEEECCC----------------CH----HHHHHHHHTTCCEEEESSHHHHH
T ss_pred cCCeEEecchhhCCHHHHHHHHH-CCCEEEEEcCC----------------CH----HHHHHHHHcCCCEEEeCCHHHHH
Confidence 37887765443333467777765 58999999883 22 23445667899999999999998
Q ss_pred HHHhcc
Q 014017 425 RCLCGE 430 (432)
Q Consensus 425 ~wL~~~ 430 (432)
++|.++
T Consensus 245 ~~l~~~ 250 (252)
T 3qvq_A 245 SAIDSH 250 (252)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 988753
No 272
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=49.36 E-value=32 Score=33.51 Aligned_cols=95 Identities=16% Similarity=0.320 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
+..+-.+.+.+.|...|-|.+-= | +.-.|+.|..--|.--++.+.++++|+.. +.-|..-+..+.|..
T Consensus 145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~ 223 (340)
T 3gr7_A 145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHP 223 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCST
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccC
Confidence 34555566788999999996530 2 23457766544444446678899999998 766766655554432
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
+| .+.++ ..+.|-.+.++|+|.|--|+
T Consensus 224 ---------~g-~~~~~----~~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 224 ---------DG-LTAKD----YVPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp ---------TS-CCGGG----HHHHHHHHHHTTCCEEEEEC
T ss_pred ---------CC-CCHHH----HHHHHHHHHHcCCCEEEEec
Confidence 12 22233 34455667889999998775
No 273
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=49.30 E-value=34 Score=29.70 Aligned_cols=54 Identities=26% Similarity=0.356 Sum_probs=37.2
Q ss_pred hhcCCcEEEE---cCC-------CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCc
Q 014017 343 ESEGADILLV---KPG-------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 412 (432)
Q Consensus 343 i~EGAD~lMV---KPa-------l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGA 412 (432)
.+.|+|+|++ .|+ ..-++.++++++.+++|+.+ .|-++.+.+ - .+..+||
T Consensus 125 ~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia---------------~GGI~~~nv-~----~~~~~Ga 184 (215)
T 1xi3_A 125 EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVA---------------IGGINKDNA-R----EVLKTGV 184 (215)
T ss_dssp HHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEE---------------ESSCCTTTH-H----HHHTTTC
T ss_pred HhcCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEE---------------ECCcCHHHH-H----HHHHcCC
Confidence 3579999996 443 23578899999888999865 455664432 2 3456899
Q ss_pred cEee
Q 014017 413 DIIL 416 (432)
Q Consensus 413 d~Ii 416 (432)
|.|+
T Consensus 185 ~gv~ 188 (215)
T 1xi3_A 185 DGIA 188 (215)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9875
No 274
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=48.99 E-value=24 Score=27.83 Aligned_cols=64 Identities=11% Similarity=0.124 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---C-CCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---P-GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---P-al~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+..... ....|+|++- | ++.-+++++.+++...+|+....-..+...+..+.+.|..
T Consensus 35 ~~~~~~a~~~l~~--~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~ 102 (140)
T 3h5i_A 35 ALTGEAAVEKVSG--GWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAY 102 (140)
T ss_dssp ESSHHHHHHHHHT--TCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEE
T ss_pred ecChHHHHHHHhc--CCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCc
Confidence 4577888877653 2457999986 3 3667999999998878999988776665555555555543
No 275
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=48.75 E-value=9.4 Score=31.51 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=23.0
Q ss_pred CCCCchHHHHHHHHHHCCCccceeecch-hhhccccch
Q 014017 267 DMMDGRVGAIRAALDAEGFQHVSIMSYT-AKYASSFYG 303 (432)
Q Consensus 267 DMMDGrV~aIR~aLD~~Gf~~v~ImSYS-aKyASsfYG 303 (432)
+||+ |+..+|+.|.++|..-+-|.+-. -.|-|.|.|
T Consensus 1 ~~m~-Rl~~l~~~m~~~glDa~li~~~~ni~YlTGf~~ 37 (140)
T 3i7m_A 1 GHMT-KLEQIQQWTAQHHASMTYLSNPKTIEYLTGFGS 37 (140)
T ss_dssp ---C-HHHHHHHHHHHTTCSEEEECCHHHHHHHHCCCC
T ss_pred Ccch-HHHHHHHHHHHcCCCEEEECCCCcceeecCCCC
Confidence 4788 99999999999998544444322 236666654
No 276
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=48.73 E-value=34 Score=35.34 Aligned_cols=124 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHCCCccceeecchhhhcccc-chhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEE
Q 014017 272 RVGAIRAALDAEGFQHVSIMSYTAKYASSF-YGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADIL 350 (432)
Q Consensus 272 rV~aIR~aLD~~Gf~~v~ImSYSaKyASsf-YGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l 350 (432)
.+..+.+.|.+++...++|+.=-.++..-. ..-.-++....+...|..+ ++.|.+-.....+.+..+..=++.|+|+|
T Consensus 194 ~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~-rl~V~aavg~~~d~~era~aLveaGvd~I 272 (511)
T 3usb_A 194 TLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQG-RLLVGAAVGVTADAMTRIDALVKASVDAI 272 (511)
T ss_dssp CHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTS-CBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhcc-ceeeeeeeeeccchHHHHHHHHhhccceE
Confidence 367777788888887777775211111100 0000011111111112211 11111112222233333333367899999
Q ss_pred EEcCCCc----hhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 351 LVKPGLP----YLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 351 MVKPal~----YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|=-+.. .+|.|+.+|+.++ +|+.+-+|. + .|....+..+|||.|+
T Consensus 273 ~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~---------------t-----~e~a~~~~~aGad~i~ 323 (511)
T 3usb_A 273 VLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVA---------------T-----AEATKALIEAGANVVK 323 (511)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEEC---------------S-----HHHHHHHHHHTCSEEE
T ss_pred EecccccchhhhhhHHHHHHHhCCCceEEeeeec---------------c-----HHHHHHHHHhCCCEEE
Confidence 9954433 5799999999985 899986663 1 2233455667888885
No 277
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.68 E-value=1.1e+02 Score=31.29 Aligned_cols=69 Identities=29% Similarity=0.377 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+++.|+..|.| .. . + | + ...+...|+.+|+++|++.|+. |
T Consensus 229 ~~~~~a~~l~~aG~d~I~i-d~-a-~-----g----~-~~~~~~~v~~i~~~~p~~~Vi~-------------g------ 276 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVV-DT-A-H-----G----H-SKGVIERVRWVKQTFPDVQVIG-------------G------ 276 (490)
T ss_dssp THHHHHHHHHHTTCSEEEE-EC-S-C-----C----S-BHHHHHHHHHHHHHCTTSEEEE-------------E------
T ss_pred chHHHHHHHhhcccceEEe-cc-c-C-----C----c-chhHHHHHHHHHHHCCCceEEE-------------e------
Confidence 5688999999999997665 21 1 1 1 1 1245689999999999977665 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
.+.+- +.|....++|||.|.=
T Consensus 277 ~v~t~-------e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 277 NIATA-------EAAKALAEAGADAVKV 297 (490)
T ss_dssp EECSH-------HHHHHHHHTTCSEEEE
T ss_pred eeCcH-------HHHHHHHHcCCCEEEE
Confidence 11111 3466778899999863
No 278
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=48.60 E-value=44 Score=32.43 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEc-C------C------------CchhHHHHHHHhhCCCCeEE
Q 014017 330 ANYREALVEAQADESEGADILLVK-P------G------------LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVK-P------a------------l~YLDII~~vk~~~~lPvaa 375 (432)
.+.+||.+. ++.|+|+|.|- | + ...++.++++++.+++||.+
T Consensus 153 ~t~~~a~~a----~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPVia 213 (369)
T 3bw2_A 153 TTPEEARAV----EAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA 213 (369)
T ss_dssp SSHHHHHHH----HHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHH----HHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEE
Confidence 466665432 46899999992 2 1 23489999999999999875
No 279
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Probab=48.53 E-value=1.9e+02 Score=28.01 Aligned_cols=108 Identities=23% Similarity=0.215 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCccc--CcCcCCCCCHHHHHHHHHHHC--CCeEEEeeecccCCCCCCccee
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTG--DEAYNDNGLVPRTIWLLKDRY--PDLVIYTDVALDPYSSDGHDGI 232 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~g--s~A~n~~g~v~raIr~iK~~f--Pdl~IitDVcLc~YTshGHcGI 232 (432)
..+.+.++++.+.|+..|.|=+-+....-.-.| ....-+-.-...-|+++++.. ++..|++=. |.+. .|
T Consensus 94 ~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRt--da~~-a~---- 166 (295)
T 1s2w_A 94 NNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARV--EAFI-AG---- 166 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEE--CTTT-TT----
T ss_pred HHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEee--hHHh-cc----
Confidence 358889999999999999994432110000001 011111112234566666654 666666422 1110 01
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-CC-CchHHHHHHHHH
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-MM-DGRVGAIRAALD 281 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-MM-DGrV~aIR~aLD 281 (432)
..++.+.+-|..+++||||+|-+-. .- --.+..|.++|+
T Consensus 167 ----------~g~~~ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 167 ----------WGLDEALKRAEAYRNAGADAILMHSKKADPSDIEAFMKAWN 207 (295)
T ss_dssp ----------CCHHHHHHHHHHHHHTTCSEEEECCCSSSSHHHHHHHHHHT
T ss_pred ----------ccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHcC
Confidence 1267788889999999999998754 54 356778888885
No 280
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=48.49 E-value=48 Score=34.18 Aligned_cols=68 Identities=22% Similarity=0.345 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+++.|+..+.+... . | +. .-+...|+.||++||++.|+. |
T Consensus 256 d~~era~aLveaGvd~I~Id~a--~------g----~~-~~v~~~i~~i~~~~~~~~vi~-------------------g 303 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTA--H------G----HS-QGVIDKVKEVRAKYPSLNIIA-------------------G 303 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECS--C------T----TS-HHHHHHHHHHHHHCTTSEEEE-------------------E
T ss_pred chHHHHHHHHhhccceEEeccc--c------c----ch-hhhhhHHHHHHHhCCCceEEe-------------------e
Confidence 4688899999999998888532 1 1 11 124569999999999876663 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
.|.+ .+.|....++|||.|-
T Consensus 304 ~v~t-------~e~a~~~~~aGad~i~ 323 (511)
T 3usb_A 304 NVAT-------AEATKALIEAGANVVK 323 (511)
T ss_dssp EECS-------HHHHHHHHHHTCSEEE
T ss_pred eecc-------HHHHHHHHHhCCCEEE
Confidence 1221 2336667789999986
No 281
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=48.21 E-value=33 Score=34.36 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=42.4
Q ss_pred hhcCCcEEEEc-C------------CCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHH
Q 014017 343 ESEGADILLVK-P------------GLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRR 409 (432)
Q Consensus 343 i~EGAD~lMVK-P------------al~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikR 409 (432)
++.||+.||+= | =|...+.|+++++..++||-+=- .-||+|+-++ +|+
T Consensus 34 e~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av~iPV~~K~------------rig~~~e~qi-lea------ 94 (330)
T 2yzr_A 34 EEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKC------------RIGHTTEALV-LEA------ 94 (330)
T ss_dssp HHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHCSSCEEEEE------------ETTCHHHHHH-HHH------
T ss_pred HHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhcCCCeEEEE------------eecchHHHHH-HHH------
Confidence 34799999983 2 24478999999999999998754 3678877544 565
Q ss_pred cCccEee
Q 014017 410 AGADIIL 416 (432)
Q Consensus 410 AGAd~Ii 416 (432)
+|||+|.
T Consensus 95 ~GaD~Id 101 (330)
T 2yzr_A 95 IGVDMID 101 (330)
T ss_dssp TTCSEEE
T ss_pred cCCCEEe
Confidence 8999986
No 282
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=48.04 E-value=1.5e+02 Score=26.45 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=21.0
Q ss_pred HCCCchhhHHHHHHHHHHHH-cCccEee
Q 014017 390 ALKMIDEQRVMMESLMCLRR-AGADIIL 416 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikR-AGAd~Ii 416 (432)
+.|.++.++.+.|.+..+++ .|||.||
T Consensus 163 ~~g~~~~~~~l~~~~~~l~~~~g~d~ii 190 (226)
T 2zsk_A 163 AFGNLKNKEWIVRLIEKYRESEGIEGVI 190 (226)
T ss_dssp GGTCCTTHHHHHHHHHHHHHHSCCSEEE
T ss_pred HcCchhHHHHHHHHHHHHHhhcCCCEEE
Confidence 35666445788888888888 8999987
No 283
>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A
Probab=47.95 E-value=1.1e+02 Score=31.61 Aligned_cols=121 Identities=15% Similarity=0.208 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.++.+.+..+.++|+++|-|-|+-+. ....+..|++-++ +.+.|+.++++ .|-||.|+-+-..
T Consensus 119 ~~~~~~l~~l~~lG~~~v~l~Pi~~~---~~~~~~GY~~~~~~~~~~~~Gt~~d~~~lv~~~h~~--Gi~VilD~V~NH~ 193 (558)
T 3vgf_A 119 EGVIRKLDYLKDLGITAIEIMPIAQF---PGKRDWGYDGVYLYAVQNSYGGPEGFRKLVDEAHKK--GLGVILDVVYNHV 193 (558)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEEC---SSSCCCSTTCCEEEEECGGGTHHHHHHHHHHHHHHT--TCEEEEEECCSCC
T ss_pred HHHHHHHHHHHHcCCcEEEECCcccC---CCCCCcCcccccccccccccCCHHHHHHHHHHHHHc--CCEEEEEEeeccc
Confidence 36888999999999999999875221 1112234554332 34556666555 7999999987655
Q ss_pred CCCCc----------------ce-eecCCCccccHHHHHHHHHHHHHHH-HcCCCee---cCCCCCC----chHHHHHHH
Q 014017 225 SSDGH----------------DG-IVREDGVIMNDETVHQLCKQAVSQA-RAGADVV---SPSDMMD----GRVGAIRAA 279 (432)
Q Consensus 225 TshGH----------------cG-Il~~~g~IdND~Tl~~Lak~Avs~A-~AGADiV---APSDMMD----GrV~aIR~a 279 (432)
..+++ || .++-++ -.|.+..+.|.+.+.-.. +.|+|-+ ++..|.| --+..+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~g~~~n~~~-~~~~~v~~~l~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~ 272 (558)
T 3vgf_A 194 GPEGNYMVKLGPYFSQKYKTPWGLTFNFDD-AESDEVRKFILENVEYWIKEYNVDGFRLSAVHAIIDTSPKHILEEIADV 272 (558)
T ss_dssp CSSSCCGGGTSCCEEEEEEETTEEEECSSS-TTHHHHHHHHHHHHHHHHHHHCCCEEEESCGGGCCCCSSSCHHHHHHHH
T ss_pred cCCCCcccccCCccCCCCCCCCCCcccCCC-CCCHHHHHHHHHHHHHHHHHhCCCEEEEecccccccccHHHHHHHHHHH
Confidence 43321 11 111111 125677788888888888 5799865 4444544 346788888
Q ss_pred HHHC
Q 014017 280 LDAE 283 (432)
Q Consensus 280 LD~~ 283 (432)
+++.
T Consensus 273 ~~~~ 276 (558)
T 3vgf_A 273 VHKY 276 (558)
T ss_dssp HHHT
T ss_pred Hhhc
Confidence 8875
No 284
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=47.64 E-value=52 Score=31.95 Aligned_cols=115 Identities=20% Similarity=0.167 Sum_probs=68.0
Q ss_pred CchHHHHHHHHHHCCCccc------eeecc--hhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHh
Q 014017 270 DGRVGAIRAALDAEGFQHV------SIMSY--TAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQA 341 (432)
Q Consensus 270 DGrV~aIR~aLD~~Gf~~v------~ImSY--SaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~ 341 (432)
+.|+-.-+.+++.=|. +. .+|=. --.++.....+|+.+....|. . .-.+- ..|.+| ++++
T Consensus 157 ~~r~~e~~Av~~GG~~-~hr~~l~d~vlikdnhi~~~Gti~~ai~~~r~~~~~---~-kI~ve----v~tlee-~~eA-- 224 (296)
T 1qap_A 157 GLRTALKYAVLCGGGA-NHRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPD---V-PVEVE----VENLDE-LDDA-- 224 (296)
T ss_dssp TCHHHHHHHHHHHTCB-CCCSSSSSCEEECHHHHHHHSSHHHHHHHHHHHSTT---S-CEEEE----ESSHHH-HHHH--
T ss_pred ccHHHHHHHHHHCCch-hhccccccEEEEEcCCeeccCCHHHHHHHHHHhCCC---C-cEEEE----eCCHHH-HHHH--
Confidence 4677777777754222 11 12200 112344456677777666552 1 22233 667766 4455
Q ss_pred chhcCCcEEEEcCCCchhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhc
Q 014017 342 DESEGADILLVKPGLPYLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 342 Di~EGAD~lMVKPal~YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYf 419 (432)
++.|||+||.-+ .-++-++++.+.. ++||.| | |-|++ |.+..+..+|+|+|-+-.
T Consensus 225 -~~aGaD~I~ld~--~~~e~l~~~v~~~~~~~~I~A---S------------GGIt~-----~~i~~~a~~GvD~isvGs 281 (296)
T 1qap_A 225 -LKAGADIIMLDN--FNTDQMREAVKRVNGQARLEV---S------------GNVTA-----ETLREFAETGVDFISVGA 281 (296)
T ss_dssp -HHTTCSEEEESS--CCHHHHHHHHHTTCTTCCEEE---C------------CCSCH-----HHHHHHHHTTCSEEECSH
T ss_pred -HHcCCCEEEECC--CCHHHHHHHHHHhCCCCeEEE---E------------CCCCH-----HHHHHHHHcCCCEEEEeH
Confidence 357999999987 4556677766655 366643 3 34564 566788999999997644
No 285
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=47.61 E-value=22 Score=36.73 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCccccc
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYV 322 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQ 322 (432)
-|-+.+++++..++..|.|+|= |.+++.+-+-|-+--.+--+ .---+.|-+.+ |.+|-|-
T Consensus 174 Ls~~~~a~~~ye~~~GGlDfiK----------------DDE~~~~q~f~p~~eRv~~v-~eai~rA~~eT---Ge~k~y~ 233 (432)
T 3nwr_A 174 LSAAETAALVRELCEAGVDFIK----------------DDEVCANPAHAPLAERVRAV-MSEVRRYRERS---GRPVMVA 233 (432)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEE----------------CCTTCSSCTTSCHHHHHHHH-HHHHHHHHHHH---SCCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCceeE----------------CCCCCCCCCcccHHHHHHHH-HHHHHHHHHHh---CCcceEE
Confidence 3567889999999999999973 33444333323222211110 00011122222 7899999
Q ss_pred ccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhH----
Q 014017 323 IRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQR---- 398 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~---- 398 (432)
+|+. +...|.++.++.=.+.|++++||=+-..=++.++.+++.+++|+-+ |= +-.|.++...
T Consensus 234 ~NiT---~~~~em~~Ra~~a~e~G~~~~mvd~~~~G~~a~~~l~r~~~~~lh~-Hr----------A~hga~~r~~~~Gi 299 (432)
T 3nwr_A 234 FNIT---DDLDAMRRHAELVEREGGSCVMASINWCGFSAIQSLRRTTPLVLHA-HR----------NGYGMMSRDPALGM 299 (432)
T ss_dssp EECC---SCHHHHHHHHHHHHHTTCCEEEEEHHHHCHHHHHHHHHHCCSEEEE-EC----------TTTTTTTSSTTEEE
T ss_pred eecC---CCHHHHHHHHHHHHHcCCCEEEEeccCCCHHHHHHHHhcCCceEEE-Cc----------CcccccccCCCCCc
Confidence 9933 6788999999998999999999987443478899999888998865 33 2234444321
Q ss_pred --HHHHHHHHHHHcCccEeeh
Q 014017 399 --VMMESLMCLRRAGADIILT 417 (432)
Q Consensus 399 --~~~EsL~~ikRAGAd~IiT 417 (432)
-++ -+.+|-+|+|.|++
T Consensus 300 ~~~vl--~Kl~RlaG~D~ih~ 318 (432)
T 3nwr_A 300 SFQAY--QTLWRLSGVDHMHV 318 (432)
T ss_dssp CHHHH--HHHHHTBTCSEEEE
T ss_pred CHHHH--HHHHHHcCCCeeec
Confidence 123 45677799999985
No 286
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=47.58 E-value=25 Score=32.94 Aligned_cols=63 Identities=29% Similarity=0.338 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcC--------CC--chhHHHHHHHhh--CCCCeEEEEechhhHHHHHHHHCCCchhh
Q 014017 330 ANYREALVEAQADESEGADILLVKP--------GL--PYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMIDEQ 397 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKP--------al--~YLDII~~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id~~ 397 (432)
.|..|+.+.. +.|||+|.+=| .. .=+|.++.+++. .++|+.| .|-|+.+
T Consensus 143 ht~~Ea~~A~----~~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvA---------------iGGI~~~ 203 (243)
T 3o63_A 143 HDPDQVAAAA----AGDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFA---------------IGGINAQ 203 (243)
T ss_dssp CSHHHHHHHH----HSSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEE---------------ESSCCTT
T ss_pred CCHHHHHHHh----hCCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEE---------------ecCCCHH
Confidence 4556754432 47999999944 21 237889999887 4799876 3445654
Q ss_pred HHHHHHHHHHHHcCccEee
Q 014017 398 RVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 398 ~~~~EsL~~ikRAGAd~Ii 416 (432)
.+..++++|||.|.
T Consensus 204 -----ni~~~~~aGa~gva 217 (243)
T 3o63_A 204 -----RLPAVLDAGARRIV 217 (243)
T ss_dssp -----THHHHHHTTCCCEE
T ss_pred -----HHHHHHHcCCCEEE
Confidence 34567789999875
No 287
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=47.19 E-value=48 Score=32.91 Aligned_cols=186 Identities=16% Similarity=0.105 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
+..+.++.+.+.|...|-|-+-= | +.-.|+.|..--|.--++.+.++.+|+..+ + -|...+....+-
T Consensus 167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~v~vrls~~~~~ 245 (377)
T 2r14_A 167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE-RVGIRLTPFLEL 245 (377)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC-cEEEEecccccc
Confidence 45566667789999999995420 2 233566665433333356677899999986 5 666666554332
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
...|+ | .+++...+.|-.+.++|+|.|.-|.-+ .. + .. .. +.-.+-.-+
T Consensus 246 ~~~~~------~-----~~~~~~~~la~~le~~Gvd~i~v~~~~---~~---~-----~~--------~~-~~~~~~~~i 294 (377)
T 2r14_A 246 FGLTD------D-----EPEAMAFYLAGELDRRGLAYLHFNEPD---WI---G-----GD--------IT-YPEGFREQM 294 (377)
T ss_dssp TTCCC------S-----CHHHHHHHHHHHHHHTTCSEEEEECCC-------------------------C-CCTTHHHHH
T ss_pred CCCCC------C-----CCHHHHHHHHHHHHHcCCCEEEEeCCc---cc---C-----CC--------Cc-chHHHHHHH
Confidence 11111 1 234445556666788999999866521 10 0 00 00 001112233
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCCeEEEEechhhH
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYS 383 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lPvaaYqVSGEYa 383 (432)
|+++ .++|+. -++.. ...++.=+++| ||+||+ .|.+.--|+++++++. .|+..|.-+.=|.
T Consensus 295 k~~~------------~iPvi~-~Ggi~--~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~g--~~l~~~~~~t~y~ 357 (377)
T 2r14_A 295 RQRF------------KGGLIY-CGNYD--AGRAQARLDDNTADAVAFGRPFIANPDLPERFRLG--AALNEPDPSTFYG 357 (377)
T ss_dssp HHHC------------CSEEEE-ESSCC--HHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT--CCCCCCCGGGSSS
T ss_pred HHHC------------CCCEEE-ECCCC--HHHHHHHHHCCCceEEeecHHHHhCchHHHHHHcC--CCCCCCCHHhcCC
Confidence 4433 223221 11111 12222234566 999988 4666667999999875 4444566554451
Q ss_pred HHHHHHHCCCchh
Q 014017 384 MIKAGGALKMIDE 396 (432)
Q Consensus 384 MikaAa~~G~id~ 396 (432)
...+|++|.
T Consensus 358 ----~~~~gy~dy 366 (377)
T 2r14_A 358 ----GAEVGYTDY 366 (377)
T ss_dssp ----SSSTTTTCS
T ss_pred ----CCCCCcccC
Confidence 224577765
No 288
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=47.12 E-value=46 Score=29.29 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=35.2
Q ss_pred hcCCcEEEE---cCC--------CchhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcC
Q 014017 344 SEGADILLV---KPG--------LPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAG 411 (432)
Q Consensus 344 ~EGAD~lMV---KPa--------l~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAG 411 (432)
+.|+|.|++ -|. ..=++.++++++.++ +|+.+ .|-++.+.+ -| +..+|
T Consensus 134 ~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia---------------~GGI~~~nv-~~----~~~~G 193 (227)
T 2tps_A 134 EDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVG---------------IGGITIDNA-AP----VIQAG 193 (227)
T ss_dssp HHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEE---------------ESSCCTTTS-HH----HHHTT
T ss_pred hCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEE---------------EcCCCHHHH-HH----HHHcC
Confidence 579999996 231 123788999998887 99865 355664432 22 34578
Q ss_pred ccEee
Q 014017 412 ADIIL 416 (432)
Q Consensus 412 Ad~Ii 416 (432)
||.|.
T Consensus 194 a~gv~ 198 (227)
T 2tps_A 194 ADGVS 198 (227)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 88765
No 289
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=47.04 E-value=31 Score=33.95 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcCCCch--------hHHHHHHHh-hCCCCeEEEEec
Q 014017 331 NYREALVEAQADESEGADILLVKPGLPY--------LDVIRLLRD-KYPLPIAAYQVS 379 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKPal~Y--------LDII~~vk~-~~~lPvaaYqVS 379 (432)
|.+|+++.+..=.+-|||.+||=|-..| .+=.+.+.+ ..++||..|++-
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 6788888887767789999999665433 223346667 789999999974
No 290
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A
Probab=46.76 E-value=95 Score=30.42 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHH---HHHHHHH----CCCeEEEeeecccCCCCCCcc
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRT---IWLLKDR----YPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~ra---Ir~iK~~----fPdl~IitDVcLc~YTshGHc 230 (432)
.+.+.++++.+.|+..|.|=+.+.+ +| +|...-.+==.+... |++.++. -||++|++=+-- |..
T Consensus 96 ~v~~tv~~l~~aGaagv~iEDq~~~-Kr--cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa--~~~---- 166 (302)
T 3fa4_A 96 MVARTTEQYSRSGVAAFHIEDQVQT-KR--CGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDS--LQT---- 166 (302)
T ss_dssp HHHHHHHHHHHTTCCEEEECSBCCC----------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECC--HHH----
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCC-cc--cCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc--ccc----
Confidence 5788899999999999999554322 11 111110111122223 3333332 589998853321 110
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHHH
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAAL 280 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG-rV~aIR~aL 280 (432)
.| -|++++ -+-.|++||||+|-+-.+-|- .+.+|.+++
T Consensus 167 -----~g---ldeAi~----Ra~ay~eAGAD~ifi~g~~~~~ei~~~~~~~ 205 (302)
T 3fa4_A 167 -----HG---YEESVA----RLRAARDAGADVGFLEGITSREMARQVIQDL 205 (302)
T ss_dssp -----HC---HHHHHH----HHHHHHTTTCSEEEETTCCCHHHHHHHHHHT
T ss_pred -----CC---HHHHHH----HHHHHHHcCCCEEeecCCCCHHHHHHHHHHh
Confidence 01 355555 467899999999988777552 344444444
No 291
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=46.71 E-value=98 Score=30.28 Aligned_cols=189 Identities=15% Similarity=0.167 Sum_probs=97.2
Q ss_pred ccCcchhhhhhhhhcc--CC--CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCChhhHhhhccCC-CC-CCCceeeEE
Q 014017 61 KLGISDAECEAAVVAG--NI--PEAPPVPPKPAAPAGTPVVPSLPLSRRPRRNRKSPAMRASFQETN-LS-PANFVYPLF 134 (432)
Q Consensus 61 ~~~~~~~~~~a~~~~~--~~--~~~~~~~~~~~~p~g~p~~~~~~~~~R~RRlR~~~~~R~l~~Et~-Ls-~~~LI~PlF 134 (432)
...+|.+|..+.+-.- +. |..-+..|+|...+ ..+-||... +.-.-....+++|++|-. .. ..=.|+|-|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---la~~IDhTl-L~p~~T~~dI~~lc~eA~~~g~aaVCV~P~~ 97 (288)
T 3oa3_A 22 MSSLNNEEWDLLISGKKATLQYPIPLLCYPAPEVVS---IAQIIDHTQ-LSLSATGSQIDVLCAEAKEYGFATVCVRPDY 97 (288)
T ss_dssp CTTCCHHHHHHHHHHHHTTSCSSCCCSCSCCCCGGG---GGGGEEEEC-CCTTCCHHHHHHHHHHHHHHTCSEEEECGGG
T ss_pred CCCCCcHHHHHHHHHHHHhcCCccccccCCCCCHHH---HHHhcCccc-CCCCCCHHHHHHHHHHHHhcCCcEEEECHHH
Confidence 3456667776654321 11 22233333332111 233344422 444445567888877621 11 222456666
Q ss_pred EeeC---C--CCccc---CCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHH
Q 014017 135 IHEG---E--EDTPI---GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLL 206 (432)
Q Consensus 135 V~eg---~--~~~~I---~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~i 206 (432)
|..- . ....| -..|.=.. +.. --+.|++++++.|-.-|-+.-.+. ..|+ .....+.+=|+.+
T Consensus 98 V~~a~~~L~~s~V~V~tVigFP~G~~-~~~-~Kv~Ea~~Ai~~GAdEIDmVINig-~lk~-------g~~~~v~~eI~~V 167 (288)
T 3oa3_A 98 VSRAVQYLQGTQVGVTCVIGFHEGTY-STD-QKVSEAKRAMQNGASELDMVMNYP-WLSE-------KRYTDVFQDIRAV 167 (288)
T ss_dssp HHHHHHHTTTSSCEEEEEESTTTSCS-CHH-HHHHHHHHHHHTTCSEEEEECCHH-HHHT-------TCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCeEEEEeCCCCCCC-cHH-HHHHHHHHHHHcCCCEEEEEeehh-hhcC-------CcHHHHHHHHHHH
Confidence 6421 1 12222 23443211 222 368899999999999998743221 1222 2224677888899
Q ss_pred HHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC--Cc----hHHHHHH
Q 014017 207 KDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM--DG----RVGAIRA 278 (432)
Q Consensus 207 K~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM--DG----rV~aIR~ 278 (432)
++..++ |-||- +.+.+ +|+-+...|+.| ++||||+|=.|-=- -| -|.-+|+
T Consensus 168 ~~a~~~~~lKVIl-----------------Et~~L-t~eei~~A~~ia---~eaGADfVKTSTGf~~~GAT~edv~lmr~ 226 (288)
T 3oa3_A 168 RLAAKDAILKVIL-----------------ETSQL-TADEIIAGCVLS---SLAGADYVKTSTGFNGPGASIENVSLMSA 226 (288)
T ss_dssp HHHTTTSEEEEEC-----------------CGGGC-CHHHHHHHHHHH---HHTTCSEEECCCSSSSCCCCHHHHHHHHH
T ss_pred HHHhcCCCceEEE-----------------ECCCC-CHHHHHHHHHHH---HHcCCCEEEcCCCCCCCCCCHHHHHHHHH
Confidence 888654 34443 33433 355455555554 58999999998211 12 4555666
Q ss_pred HHHHCC
Q 014017 279 ALDAEG 284 (432)
Q Consensus 279 aLD~~G 284 (432)
..+..|
T Consensus 227 ~v~~~g 232 (288)
T 3oa3_A 227 VCDSLQ 232 (288)
T ss_dssp HHHHSS
T ss_pred HHHHhC
Confidence 654433
No 292
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=46.49 E-value=67 Score=30.12 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhchhcCCcEE-EEcCC-----Cch---hHHHHHHHhhC---CCCeEEEEechhhHHHHHHHHCCCchhhH
Q 014017 331 NYREALVEAQADESEGADIL-LVKPG-----LPY---LDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMIDEQR 398 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~l-MVKPa-----l~Y---LDII~~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id~~~ 398 (432)
+...-+.|++. ++.|||-| ||=+- .-| ++=|+.+++.. .+||. .+.+++..++
T Consensus 65 ~~~~k~~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvI--------------lEt~~Lt~ee 129 (226)
T 1vcv_A 65 PTASRIALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVI--------------TEEPYLRDEE 129 (226)
T ss_dssp CHHHHHHHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEE--------------CCGGGCCHHH
T ss_pred chHHHHHHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEE--------------EeccCCCHHH
Confidence 34556788998 99999988 44332 223 33344455543 23322 2455566544
Q ss_pred HHHHHHHHHHHcCccEeehh--cH
Q 014017 399 VMMESLMCLRRAGADIILTY--FA 420 (432)
Q Consensus 399 ~~~EsL~~ikRAGAd~IiTY--fA 420 (432)
+...-.....||||+|=|. |.
T Consensus 130 -i~~a~~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 130 -RYTLYDIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp -HHHHHHHHHHHTCSEEECCCSCC
T ss_pred -HHHHHHHHHHcCCCEEEeCCCCC
Confidence 4556666678999999998 75
No 293
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=45.92 E-value=1.6e+02 Score=27.90 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHcCCCeec-----C-------CCCCCchHHHHHHHHHHCCCc-ccee-----ecchhhhccccc---
Q 014017 244 TVHQLCKQAVSQARAGADVVS-----P-------SDMMDGRVGAIRAALDAEGFQ-HVSI-----MSYTAKYASSFY--- 302 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVA-----P-------SDMMDGrV~aIR~aLD~~Gf~-~v~I-----mSYSaKyASsfY--- 302 (432)
++++.-++|-..+++|||+|= | .++-.--...+|+.+++.|.. =+.+ .-|.+++.+.+.
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~kIga 114 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKYSDILQIGA 114 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHHCSEEEECG
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhhCCEEEECc
Confidence 477777888888999999883 1 112133467889999999861 1222 234555533222
Q ss_pred -----hhhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCC-cEEEEc------CCCch----hHHHHHH
Q 014017 303 -----GPFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGA-DILLVK------PGLPY----LDVIRLL 365 (432)
Q Consensus 303 -----GPFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA-D~lMVK------Pal~Y----LDII~~v 365 (432)
-|+-.++.+... .+= |+=+. ++..|++..++.=..+|. |+++.. |.-++ |.-|..+
T Consensus 115 ~~~~n~~ll~~~a~~~kPV~l-k~G~~------~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~l 187 (262)
T 1zco_A 115 RNSQNFELLKEVGKVENPVLL-KRGMG------NTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVV 187 (262)
T ss_dssp GGTTCHHHHHHHTTSSSCEEE-ECCTT------CCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHH
T ss_pred ccccCHHHHHHHHhcCCcEEE-ecCCC------CCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHH
Confidence 134444444221 011 11111 255776666655456786 788777 33222 4578899
Q ss_pred HhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc--EeehhcHHH
Q 014017 366 RDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD--IILTYFALQ 422 (432)
Q Consensus 366 k~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd--~IiTYfA~~ 422 (432)
|+.|++||..|---+ .|. ++.+-+...+-.-+||| +|=++|.++
T Consensus 188 k~~~~~pVi~d~sH~----------~g~---~~~v~~~~~aAva~Ga~Gl~iE~H~~~d 233 (262)
T 1zco_A 188 KELSHLPIIVDPSHP----------AGR---RSLVIPLAKAAYAIGADGIMVEVHPEPE 233 (262)
T ss_dssp HHHBSSCEEECSSTT----------TCS---GGGHHHHHHHHHHTTCSEEEEEBCSSGG
T ss_pred HhhhCCCEEEEcCCC----------CCc---cchHHHHHHHHHHcCCCEEEEEecCCcc
Confidence 999999987775422 221 12233333344466888 776776654
No 294
>4h17_A Hydrolase, isochorismatase family; rossmann-like fold, structural genomics, joint center for ST genomics, JCSG; 1.60A {Pseudomonas putida KT2440}
Probab=45.77 E-value=37 Score=30.39 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=48.6
Q ss_pred HHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHH
Q 014017 165 KARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDET 244 (432)
Q Consensus 165 ~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~T 244 (432)
.+.+.||+.++|.|.-. +.-|..+.+-..+.-=+++|+.|.|- .++...|+|.+. ..-..+.+
T Consensus 117 ~L~~~gi~~lvi~G~~T--------------~~CV~~Ta~da~~~Gy~V~vv~Da~a-s~~~~~~~~~~~--a~~~h~~a 179 (197)
T 4h17_A 117 TLQELGHLDLIVCGFMS--------------HSSVSTTVRRAKDYGYRCTLVEDASA-TRDLAFKDGVIP--AAQIHQCE 179 (197)
T ss_dssp HHHHHTCSEEEEEEECT--------------TTHHHHHHHHHHHTTCEEEEEEEEEE-CCCEEETTEEEC--HHHHHHHH
T ss_pred HHHhcCCCEEEEEeeCc--------------CHHHHHHHHHHHHCCCEEEEeCcccc-ccCcccccCCCC--HHHHHHHH
Confidence 34567999999999722 14555566666666558999999875 455556777552 22223333
Q ss_pred HHHHHHHHHHHHHcCCCeecCCC
Q 014017 245 VHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 245 l~~Lak~Avs~A~AGADiVAPSD 267 (432)
+..| +..+|+++.-.+
T Consensus 180 L~~l-------~~~~a~V~tt~e 195 (197)
T 4h17_A 180 MAVM-------ADNFACVAPTAS 195 (197)
T ss_dssp HHHH-------HHHTCEEECGGG
T ss_pred HHHH-------HhcceEEeEHHH
Confidence 3333 345788776444
No 295
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=45.52 E-value=77 Score=31.43 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=67.0
Q ss_pred eeEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCC---CCCcccC--cCcCCCCCH---HHH
Q 014017 131 YPLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDA---LKSPTGD--EAYNDNGLV---PRT 202 (432)
Q Consensus 131 ~PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~---~Kd~~gs--~A~n~~g~v---~ra 202 (432)
.||+|.=. |+ ++. +++.+.++.+.+.|+..|.+.+....- .+...+. ..+....+- -+.
T Consensus 221 ~Pv~vKi~---------p~---~~~-~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~ 287 (367)
T 3zwt_A 221 PAVLVKIA---------PD---LTS-QDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQT 287 (367)
T ss_dssp CEEEEEEC---------SC---CCH-HHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHH
T ss_pred ceEEEEeC---------CC---CCH-HHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHH
Confidence 69998742 22 122 358888889999999999998763210 1111110 111111111 367
Q ss_pred HHHHHHHCC-CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--CCc--hH----
Q 014017 203 IWLLKDRYP-DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--MDG--RV---- 273 (432)
Q Consensus 203 Ir~iK~~fP-dl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--MDG--rV---- 273 (432)
|+.||+.++ ++-||+ .|-|.+-+ .|..+-++|||.|.=.-- .+| -+
T Consensus 288 v~~i~~~v~~~ipvI~------------------~GGI~s~~-------da~~~l~~GAd~V~vgra~l~~gP~~~~~i~ 342 (367)
T 3zwt_A 288 IREMYALTQGRVPIIG------------------VGGVSSGQ-------DALEKIRAGASLVQLYTALTFWGPPVVGKVK 342 (367)
T ss_dssp HHHHHHHTTTCSCEEE------------------ESSCCSHH-------HHHHHHHHTCSEEEESHHHHHHCTHHHHHHH
T ss_pred HHHHHHHcCCCceEEE------------------ECCCCCHH-------HHHHHHHcCCCEEEECHHHHhcCcHHHHHHH
Confidence 888888886 555552 35565433 344444579998763221 122 23
Q ss_pred HHHHHHHHHCCCccc
Q 014017 274 GAIRAALDAEGFQHV 288 (432)
Q Consensus 274 ~aIR~aLD~~Gf~~v 288 (432)
..+++.|++.||+++
T Consensus 343 ~~l~~~m~~~G~~~i 357 (367)
T 3zwt_A 343 RELEALLKEQGFGGV 357 (367)
T ss_dssp HHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHcCCCCH
Confidence 345566777898665
No 296
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=45.38 E-value=55 Score=28.40 Aligned_cols=64 Identities=13% Similarity=0.063 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|+|++= |++.-+++++.+++.. .+|+..+.-..+-.....+.+.|..+
T Consensus 33 ~~~~~~al~~l~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~ 100 (225)
T 3c3w_A 33 AGSVAEAMARVPA---ARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSDEAMLDAILAGASG 100 (225)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEGGGSSSHHHHHHHHHHTCCC
T ss_pred ECCHHHHHHHHhh---cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHCCCCE
Confidence 5688888877653 458999886 6667789999999876 59999887777777777788888755
No 297
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=45.28 E-value=1.3e+02 Score=30.07 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=78.4
Q ss_pred chhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCc----CcCCC----------------CCHHHHHHHHHHHC-C
Q 014017 154 GWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDE----AYNDN----------------GLVPRTIWLLKDRY-P 211 (432)
Q Consensus 154 si~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~----A~n~~----------------g~v~raIr~iK~~f-P 211 (432)
+.+ .+.++++++++.|.+.+-+ .|. +. .....|.. .++++ .-..+-++++++.+ |
T Consensus 150 ~~e-~~~~~a~~~~~~Gf~~iKlKvg~-~~-~~~~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~e~v~avR~a~G~ 226 (425)
T 3vcn_A 150 TIE-DTIAEAVKYKAMGYKAIRLQTGV-PG-LASTYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVPKLFERAREVLGW 226 (425)
T ss_dssp SHH-HHHHHHHHHHHTTCSEEEEEECC-TT-CSCCTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTHHHHHHHHHHHCS
T ss_pred CHH-HHHHHHHHHHHcCCCEEEEeecC-cc-ccccccccccccccCcccccccccccccchhHHHHHHHHHHHHHHHcCC
Confidence 443 6889999999999999998 342 11 11111100 01111 12346788899998 6
Q ss_pred CeEEEeeecccCCCCC-----------CcceeecCCCccccHHHHHHHHH----------------HHHHHHHcC-CCee
Q 014017 212 DLVIYTDVALDPYSSD-----------GHDGIVREDGVIMNDETVHQLCK----------------QAVSQARAG-ADVV 263 (432)
Q Consensus 212 dl~IitDVcLc~YTsh-----------GHcGIl~~~g~IdND~Tl~~Lak----------------~Avs~A~AG-ADiV 263 (432)
|+-|+.|.. +.||.. -.--.+.+.=.-+|-+.+..|.+ ++....+.| +|+|
T Consensus 227 d~~l~vDaN-~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v 305 (425)
T 3vcn_A 227 DVHLLHDVH-HRLTPIEAARLGKDLEPYRLFWLEDSVPAENQAGFRLIRQHTTTPLAVGEIFAHVWDAKQLIEEQLIDYL 305 (425)
T ss_dssp SSEEEEECT-TCCCHHHHHHHHHHHGGGCCSEEECCSCCSSTTHHHHHHHHCCSCEEECTTCCSGGGTHHHHHTTCCSEE
T ss_pred CCEEEEECC-CCCCHHHHHHHHHHHHhcCCCEEECCCChhhHHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCeE
Confidence 899999975 445411 00111222111234445555554 333444454 8999
Q ss_pred cCCCCCCchHHHHHHHHHHCCCccceeecchh
Q 014017 264 SPSDMMDGRVGAIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 264 APSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSa 295 (432)
.|-=+--|=+...++..+.+--.++.+|.++.
T Consensus 306 ~~k~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 337 (425)
T 3vcn_A 306 RATVLHAGGITNLKKIAAFADLHHVKTGCHGA 337 (425)
T ss_dssp CCCTTTTTHHHHHHHHHHHHGGGTCEECCCCC
T ss_pred ecChhhcCCHHHHHHHHHHHHHcCCEEeeccC
Confidence 99888878777766666544334566666643
No 298
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=44.86 E-value=33 Score=35.18 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=39.4
Q ss_pred hhcCCcEEEEcCCC----chhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 343 ESEGADILLVKPGL----PYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 343 i~EGAD~lMVKPal----~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
++.|+|+|.+=-+. ..+|.|+.+|+.+ ++||.+-+|. +. |....+..||||.|+
T Consensus 238 ~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~---------------t~-----e~a~~l~~aGaD~I~ 296 (490)
T 4avf_A 238 VAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIA---------------TA-----EAAKALAEAGADAVK 296 (490)
T ss_dssp HHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEEC---------------SH-----HHHHHHHHTTCSEEE
T ss_pred hhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeC---------------cH-----HHHHHHHHcCCCEEE
Confidence 46799999884433 3479999999998 7999996552 11 234567778999887
No 299
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=44.77 E-value=73 Score=30.92 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCcc
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVI 239 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~I 239 (432)
.+.++.+.+.|++.|.+|-.+.+ . ....+.++..|+.. +.++..++ |.++
T Consensus 96 ~~~i~~a~~aGvd~v~I~~~~s~----~---------~~~~~~i~~ak~~G--~~v~~~~~-~a~~-------------- 145 (345)
T 1nvm_A 96 VHDLKNAYQAGARVVRVATHCTE----A---------DVSKQHIEYARNLG--MDTVGFLM-MSHM-------------- 145 (345)
T ss_dssp HHHHHHHHHHTCCEEEEEEETTC----G---------GGGHHHHHHHHHHT--CEEEEEEE-STTS--------------
T ss_pred HHHHHHHHhCCcCEEEEEEeccH----H---------HHHHHHHHHHHHCC--CEEEEEEE-eCCC--------------
Confidence 56788999999999999742211 0 13577888888874 44444443 2221
Q ss_pred ccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHHH-H--CCC--ccceeecchhhhccccch
Q 014017 240 MNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAALD-A--EGF--QHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 240 dND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aLD-~--~Gf--~~v~ImSYSaKyASsfYG 303 (432)
.+.+.+.+++-...++|||+|+-.||.=. .|.++|+.+. . -++ +|..=|+.+.-.+..-.|
T Consensus 146 ---~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aG 219 (345)
T 1nvm_A 146 ---IPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEG 219 (345)
T ss_dssp ---SCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTT
T ss_pred ---CCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcC
Confidence 12456666666667789999999887542 3556666652 1 111 333335555444444444
No 300
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=44.61 E-value=11 Score=36.14 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=49.8
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE----------cCCCc---hhHHHHHHHhhCCCC
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV----------KPGLP---YLDVIRLLRDKYPLP 372 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV----------KPal~---YLDII~~vk~~~~lP 372 (432)
|+.....|-+|.+...|+. ..+..++.+.+.. + |+|.+.+ .|... ++++|+.+|+ .++|
T Consensus 112 ~~~~~d~pv~~~~~~~q~~----~~~~~~~~~a~~~-~--~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~-~~~P 183 (332)
T 1vcf_A 112 RKVAPKALLIANLGLAQLR----RYGRDDLLRLVEM-L--EADALAFHVNPLQEAVQRGDTDFRGLVERLAELLP-LPFP 183 (332)
T ss_dssp TTTCSSSCEEEEEEGGGGG----TCCHHHHHHHHHH-H--TCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCS-CSSC
T ss_pred eccCCCceeecccChhhhh----ccChHHHHHHHhh-c--CCCceeeccchHHHHhcCCCccHHHHHHHHHHHHc-CCCC
Confidence 3333345656666566765 4334443333221 1 4554432 34444 4899999999 9999
Q ss_pred eEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 373 IAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 373 vaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|.+=-|+ .|+- . |-...+..+|+|.|+-
T Consensus 184 v~vK~v~-----------~g~~-~-----e~a~~~~~~G~d~I~v 211 (332)
T 1vcf_A 184 VMVKEVG-----------HGLS-R-----EAALALRDLPLAAVDV 211 (332)
T ss_dssp EEEECSS-----------SCCC-H-----HHHHHHTTSCCSEEEC
T ss_pred EEEEecC-----------CCCC-H-----HHHHHHHHcCCCEEEe
Confidence 9975443 2332 2 2234677899999853
No 301
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=44.57 E-value=1e+02 Score=23.36 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh--C-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK--Y-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~--~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|++++= |.+.-+++++.+++. + .+|+....-..+...+..+.+.|..+
T Consensus 35 ~~~~~~a~~~~~---~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 104 (128)
T 1jbe_A 35 AEDGVDALNKLQ---AGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASG 104 (128)
T ss_dssp ESSHHHHHHHHT---TCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHH---hcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHHHhCcCc
Confidence 457788886654 2457999875 666678899999973 3 58999887776666666677777654
No 302
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=44.42 E-value=87 Score=31.03 Aligned_cols=180 Identities=15% Similarity=0.161 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC-----------CCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV-----------PDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi-----------~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
+..+-.+.+.+.|...|-|.+-= .+.-.|+.|-.--|.--++.+.|+++|+.+++--|..-+....+
T Consensus 162 ~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~-- 239 (361)
T 3gka_A 162 AFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGD-- 239 (361)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCC--
T ss_pred HHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccc--
Confidence 35556667889999999996531 23446777765445555778899999999863245545443322
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhh
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFR 306 (432)
..|+- ...+++...+.|-.+.++|+|.|.-|.-+.|. .|..-+|
T Consensus 240 --~~g~~-------~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~---------------------------~~~~~ik 283 (361)
T 3gka_A 240 --AHTMG-------DSDPAATFGHVARELGRRRIAFLFARESFGGD---------------------------AIGQQLK 283 (361)
T ss_dssp --SSSCC-------CSCHHHHHHHHHHHHHHTTCSEEEEECCCSTT---------------------------CCHHHHH
T ss_pred --cCCCC-------CCCcHHHHHHHHHHHHHcCCCEEEECCCCCCH---------------------------HHHHHHH
Confidence 11221 11234444555666788999999866543210 2445566
Q ss_pred hhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCCeEEEEechhhHH
Q 014017 307 EALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSM 384 (432)
Q Consensus 307 dAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lPvaaYqVSGEYaM 384 (432)
+++. -|-.+.- .+ + | .+| +.-+++| ||+||+ .|.+.-=|+.+++++. .|+..|.-+.=|.-
T Consensus 284 ~~~~-iPvi~~G-gi--t----~---e~a----~~~l~~G~aD~V~iGR~~ladPdl~~k~~~g--~~l~~~~~~~~y~~ 346 (361)
T 3gka_A 284 AAFG-GPFIVNE-NF--T----L---DSA----QAALDAGQADAVAWGKLFIANPDLPRRFKLN--APLNEPNAATFYAQ 346 (361)
T ss_dssp HHHC-SCEEEES-SC--C----H---HHH----HHHHHTTSCSEEEESHHHHHCTTHHHHHHHT--CCCCCCCGGGSSCS
T ss_pred HHcC-CCEEEeC-CC--C----H---HHH----HHHHHcCCccEEEECHHhHhCcHHHHHHHhC--CCCCCCccccccCC
Confidence 6663 3432111 12 3 3 222 2234566 999987 4555556899999874 56667766655531
Q ss_pred HHHHHHCCCchh
Q 014017 385 IKAGGALKMIDE 396 (432)
Q Consensus 385 ikaAa~~G~id~ 396 (432)
...|++|.
T Consensus 347 ----~~~gy~dy 354 (361)
T 3gka_A 347 ----GEVGYTDY 354 (361)
T ss_dssp ----SSTTTTCS
T ss_pred ----CCCCcccC
Confidence 24677775
No 303
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=44.30 E-value=28 Score=31.87 Aligned_cols=122 Identities=15% Similarity=0.075 Sum_probs=67.1
Q ss_pred CchHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCc
Q 014017 270 DGRVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGAD 348 (432)
Q Consensus 270 DGrV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD 348 (432)
.|-+..+-+.|.+.|. .+|.|.||.... ..-+|+. .|.+ +..|-.+ ..+.+..+.++ +-|+|
T Consensus 128 ~~~~~~v~~~l~~~~~~~~vii~SF~~~~----l~~~~~~---~p~~--~~~~l~~--~~~~~~~~~~~------~~~~~ 190 (252)
T 2pz0_A 128 PGIEEKLIKAIKEYNFEERVIISSFNHYS----LRDVKKM---APHL--KIGLLYQ--CGLVEPWHMAL------RMEAY 190 (252)
T ss_dssp TTHHHHHHHHHHHTTCTTTEEEEESBHHH----HHHHHHH---CTTS--EEEEEEC--SBCSSTHHHHH------HTTCS
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCHHH----HHHHHHH---CCCC--CEEEEec--CccccHHHHHH------HcCCe
Confidence 4566777778877777 446666654321 1112222 2321 1122221 00112122222 23678
Q ss_pred EEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHHh
Q 014017 349 ILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC 428 (432)
Q Consensus 349 ~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~ 428 (432)
.+-+.-...--+.|+.+++ .+++|.+|.| |.+ |.+..+.+.|+|.|||-+-..+.++|.
T Consensus 191 ~i~~~~~~~~~~~v~~~~~-~G~~v~~wTv----------------n~~----~~~~~l~~~GvdgIiTD~P~~~~~~l~ 249 (252)
T 2pz0_A 191 SLHPFYFNIIPELVEGCKK-NGVKLFPWTV----------------DRK----EDMERMIKAGVDGIITDDPETLINLVR 249 (252)
T ss_dssp EEEEBGGGCCHHHHHHHHH-TTCEECCBCC----------------CSH----HHHHHHHHHTCSEEEESCHHHHHHHHC
T ss_pred EEecchhcCCHHHHHHHHH-CCCEEEEECC----------------CCH----HHHHHHHHcCCCEEEcCCHHHHHHHHh
Confidence 7765432223467777775 5899999987 322 234455678999999999888878876
Q ss_pred c
Q 014017 429 G 429 (432)
Q Consensus 429 ~ 429 (432)
+
T Consensus 250 ~ 250 (252)
T 2pz0_A 250 K 250 (252)
T ss_dssp -
T ss_pred h
Confidence 4
No 304
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=44.25 E-value=61 Score=24.38 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
..|..||+..... ...|++++= |.+.-+++++.+++. ..+|+....-.++......+.+.|.
T Consensus 31 ~~~~~~a~~~~~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~ 98 (124)
T 1mb3_A 31 TREGLSALSIARE---NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGC 98 (124)
T ss_dssp ESCHHHHHHHHHH---HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTC
T ss_pred eCCHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECCCCHHHHHHHHhCCC
Confidence 4577788766542 457999875 666778999999974 3689988765444444444444443
No 305
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=44.24 E-value=76 Score=24.56 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHh--h-CCCCeEEEEechhhHHHH-HHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRD--K-YPLPIAAYQVSGEYSMIK-AGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~--~-~~lPvaaYqVSGEYaMik-aAa~~G~i 394 (432)
..|..||+.... ++..|+|++- |.+.-+++++.+|+ . ..+|+....-..+..... .+.+.|..
T Consensus 36 ~~~~~~a~~~l~---~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~ 105 (140)
T 3grc_A 36 VHSAAQALEQVA---RRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVS 105 (140)
T ss_dssp ECSHHHHHHHHH---HSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCC
T ss_pred ECCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCC
Confidence 457788887664 3558999997 66667899999997 3 368998876555544444 44455543
No 306
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=44.05 E-value=67 Score=28.76 Aligned_cols=184 Identities=19% Similarity=0.205 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
+..+.++.+.+.|+..+.+... . ..+ ...+.....++.|++.+ ++-|+. .|
T Consensus 32 d~~~~a~~~~~~Gad~i~v~d~-~-----~~~----~~~~~~~~~i~~i~~~~-~iPvi~------------------~G 82 (252)
T 1ka9_F 32 DPVEAARAYDEAGADELVFLDI-S-----ATH----EERAILLDVVARVAERV-FIPLTV------------------GG 82 (252)
T ss_dssp CHHHHHHHHHHHTCSCEEEEEC-C-----SST----TCHHHHHHHHHHHHTTC-CSCEEE------------------ES
T ss_pred CHHHHHHHHHHcCCCEEEEEcC-C-----ccc----cCccccHHHHHHHHHhC-CCCEEE------------------EC
Confidence 4788999999999999877642 1 111 12233345678887764 444442 13
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecC-CCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSP-SDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAP-SDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
.|.+.+ ++....++|||.|.= +..+... ..+++.+...|-.. .+++-++|--. |-|+=+.. |
T Consensus 83 gi~~~~-------~~~~~~~~Gad~V~lg~~~l~~p-~~~~~~~~~~~~~~-i~~~~~~~~~~---g~~~v~~~-----g 145 (252)
T 1ka9_F 83 GVRSLE-------DARKLLLSGADKVSVNSAAVRRP-ELIRELADHFGAQA-VVLAIDARWRG---DFPEVHVA-----G 145 (252)
T ss_dssp SCCSHH-------HHHHHHHHTCSEEEECHHHHHCT-HHHHHHHHHHCGGG-EEEEEEEEEET---TEEEEEET-----T
T ss_pred CcCCHH-------HHHHHHHcCCCEEEEChHHHhCc-HHHHHHHHHcCCCc-EEEEEEEecCC---CCEEEEEC-----C
Confidence 333222 233333569998753 3333221 23455555544322 22333332110 11221111 1
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCCc----hhHHHHHHHhhCCCCeEEEEechhhHHHHHHH
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGLP----YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal~----YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa 389 (432)
-...-.. +..|.+++++ +.|++.+.+ +.... -++.++++++..++|+.|
T Consensus 146 ~~~~~~~-------~~~e~~~~~~---~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia-------------- 201 (252)
T 1ka9_F 146 GRVPTGL-------HAVEWAVKGV---ELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIA-------------- 201 (252)
T ss_dssp TTEEEEE-------EHHHHHHHHH---HHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEE--------------
T ss_pred CccccCC-------cHHHHHHHHH---HcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEE--------------
Confidence 1111111 2344444443 479998776 44333 389999999999999976
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|-+... |-+..++.+|||.++
T Consensus 202 -~GGI~~~----~d~~~~~~~Gadgv~ 223 (252)
T 1ka9_F 202 -SGGAGRM----EHFLEAFQAGAEAAL 223 (252)
T ss_dssp -ESCCCSH----HHHHHHHHTTCSEEE
T ss_pred -eCCCCCH----HHHHHHHHCCCHHHH
Confidence 3444432 233334467888765
No 307
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=43.39 E-value=48 Score=32.80 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHcCCCeEEEeecC---------C--CCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKV---------P--DALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi---------~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
...+.++.+.+.|...|-|.+-= | +.-.|+.|..--|.--++.+.++++|+.++ + -|...+....+.
T Consensus 168 ~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~-~V~vrls~~~~~ 246 (376)
T 1icp_A 168 EFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSD-RVGIRISPFAHY 246 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG-GEEEEECTTCCT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCC-ceEEEecccccc
Confidence 46666777889999999996520 2 223466665433333456678899999987 5 566676654331
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM-DGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
.|+ +.+.+++...+.|-.+.++|+|.|.-|.-+ +. ++..+..-.+..-
T Consensus 247 ----~g~-------~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~--------------------~~~~~~~~~~~~~ 295 (376)
T 1icp_A 247 ----NEA-------GDTNPTALGLYMVESLNKYDLAYCHVVEPRMKT--------------------AWEKIECTESLVP 295 (376)
T ss_dssp ----TTC-------CCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------------------------CCCCSHH
T ss_pred ----CCC-------CCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccC--------------------CCCccccHHHHHH
Confidence 122 112345555666667789999999765421 10 0100000123334
Q ss_pred hhhhhhCCCCC--CCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCCeEEEEech
Q 014017 305 FREALDSNPRF--GDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 305 FRdAa~Sap~~--gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lPvaaYqVSG 380 (432)
+|++++ -|-. |+ . +..+| .+ =+++| ||+||+ .|.+.--|+++++++. .|+..|.-+-
T Consensus 296 vr~~~~-iPvi~~G~-----------i-~~~~a-~~---~l~~g~aD~V~~gR~~l~~P~l~~k~~~g--~~l~~~~~~~ 356 (376)
T 1icp_A 296 MRKAYK-GTFIVAGG-----------Y-DREDG-NR---ALIEDRADLVAYGRLFISNPDLPKRFELN--APLNKYNRDT 356 (376)
T ss_dssp HHHHCC-SCEEEESS-----------C-CHHHH-HH---HHHTTSCSEEEESHHHHHCTTHHHHHHHT--CCCCCCCGGG
T ss_pred HHHHcC-CCEEEeCC-----------C-CHHHH-HH---HHHCCCCcEEeecHHHHhCccHHHHHHcC--CCCCCCCHHH
Confidence 555542 2322 21 1 22332 22 24456 999998 4666667999999875 4444455443
Q ss_pred hhHHHHHHHHCCCchh
Q 014017 381 EYSMIKAGGALKMIDE 396 (432)
Q Consensus 381 EYaMikaAa~~G~id~ 396 (432)
=|. .....|++|.
T Consensus 357 ~y~---~~~~~gy~dy 369 (376)
T 1icp_A 357 FYT---SDPIVGYTDY 369 (376)
T ss_dssp SSC---CCSSTTTTCS
T ss_pred ccc---CCCCCCcccC
Confidence 330 0123577765
No 308
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=43.38 E-value=31 Score=32.14 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014017 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.+...++.+.+.|. ++|.+.-.|. -+.+++.+.+.|||+-|+| .++|+
T Consensus 144 T~~~ai~~L~~~G~pe~~I~~~~~va-----------------a~egl~~l~~~~P~v~i~t-a~iD~ 193 (217)
T 3dmp_A 144 SAAHAIDVLKRRGVPGERLMFLALVA-----------------APEGVQVFQDAHPDVKLYV-ASLDS 193 (217)
T ss_dssp HHHHHHHHHHTTTCCGGGEEEECSEE-----------------CHHHHHHHHHHCTTCEEEE-SEECC
T ss_pred HHHHHHHHHHHcCCCcCeEEEEEEEe-----------------CHHHHHHHHHHCCCCEEEE-EEecC
Confidence 58889999999999 8887754321 1578999999999998887 33444
No 309
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=43.29 E-value=59 Score=31.97 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
+..+.++.+.+.|...|-|-+- ..+.-.|+.|..--|.--++.+.++.+|+..+ + -|..-+..+.+.
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~-pv~vris~~~~~ 240 (365)
T 2gou_A 162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAE-RVGVRLAPLTTL 240 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGG-GEEEEECSSCCT
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCC-cEEEEEcccccc
Confidence 3555666678999999999541 11234666665443444456678899999886 5 454444443221
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-CCchHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM-MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM-MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
...| + ..|++...+.|-...++|+|.|.-|.. ++|. .+ | --.+-.-
T Consensus 241 ~~~~------~-----~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~----------~~--------~----~~~~~~~ 287 (365)
T 2gou_A 241 NGTV------D-----ADPILTYTAAAALLNKHRIVYLHIAEVDWDDA----------PD--------T----PVSFKRA 287 (365)
T ss_dssp TSCC------C-----SSHHHHHHHHHHHHHHTTCSEEEEECCBTTBC----------CC--------C----CHHHHHH
T ss_pred CCCC------C-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCC----------CC--------c----cHHHHHH
Confidence 1111 1 124455555666677899999987653 2210 00 0 0012223
Q ss_pred hhhhhhCCCCCCCcccccccccCCCC-CHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCCeEEEEechh
Q 014017 305 FREALDSNPRFGDKKTYVIRVIELYA-NYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLPIAAYQVSGE 381 (432)
Q Consensus 305 FRdAa~Sap~~gDRktYQmd~~~~p~-N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lPvaaYqVSGE 381 (432)
+|+++ .++||..=+ +..+| +.=+++| ||+||+ .+.+.--|+++++++. .|+..|.-++-
T Consensus 288 i~~~~------------~iPvi~~Ggi~~~~a----~~~l~~g~aD~V~igR~~i~~P~l~~~~~~g--~~l~~~~~~~~ 349 (365)
T 2gou_A 288 LREAY------------QGVLIYAGRYNAEKA----EQAINDGLADMIGFGRPFIANPDLPERLRHG--YPLAEHVPATL 349 (365)
T ss_dssp HHHHC------------CSEEEEESSCCHHHH----HHHHHTTSCSEEECCHHHHHCTTHHHHHHHT--CCCCCCCGGGS
T ss_pred HHHHC------------CCcEEEeCCCCHHHH----HHHHHCCCcceehhcHHHHhCchHHHHHHcC--CCCCCCchhhc
Confidence 33333 222211100 22232 2224567 999998 3555556899999875 45556776666
Q ss_pred hHHHHHHHHCCCchh
Q 014017 382 YSMIKAGGALKMIDE 396 (432)
Q Consensus 382 YaMikaAa~~G~id~ 396 (432)
|. ....|+.|.
T Consensus 350 y~----~~~~gy~dy 360 (365)
T 2gou_A 350 FG----GGEKGLTDY 360 (365)
T ss_dssp SS----SSSTTTTCC
T ss_pred cC----CCCCCCCCC
Confidence 63 233577764
No 310
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=43.25 E-value=58 Score=29.05 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCc---hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchh------hHH
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLP---YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE------QRV 399 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~---YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~------~~~ 399 (432)
..|..||+..... ...|+|++=-.++ =+++++.+++...+||..+.-..+-..+..|.+.|..|. .+.
T Consensus 67 ~~~~~~al~~~~~---~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~ 143 (249)
T 3q9s_A 67 ADSAMNGLIKARE---DHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDE 143 (249)
T ss_dssp ESSHHHHHHHHHH---SCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHH
T ss_pred eCCHHHHHHHHhc---CCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHH
Confidence 5678888876653 4589999975554 478899999877899999988888788888888887542 345
Q ss_pred HHHHHHHHHH
Q 014017 400 MMESLMCLRR 409 (432)
Q Consensus 400 ~~EsL~~ikR 409 (432)
+.+.+..+.+
T Consensus 144 L~~~i~~~l~ 153 (249)
T 3q9s_A 144 LLARVKVQLR 153 (249)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHh
Confidence 5666665554
No 311
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=42.56 E-value=46 Score=32.37 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTD 218 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitD 218 (432)
.+.++..-+.|-..+.+.=.+|.+ ....|..+. +--..-|+.|++.+ ++=|+..
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~D-i~~~~g~~R---~~~~~~i~~i~~~v-~iPvl~k 84 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSE-LRNTDGVAR---SVDPLKIEEIRKCI-SINVLAK 84 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC------CCCCCC---CCCHHHHHHHHTTC-CSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEecCCCCc-chhcCCccc---CCCHHHHHHHHHhc-CCCEEEe
Confidence 466777788899888876333311 222222122 23456788888876 5656543
No 312
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=42.24 E-value=43 Score=31.51 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=36.5
Q ss_pred eeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC
Q 014017 151 YRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212 (432)
Q Consensus 151 ~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd 212 (432)
.|...+ .+.+.++.+.+.|+..+.|. |..|. ..|+ .+.+-++.|++.+|+
T Consensus 150 ~~~~~~-~~~~~~~~~~~~G~d~i~l~--------Dt~G~--~~P~-~~~~lv~~l~~~~~~ 199 (295)
T 1ydn_A 150 GPVTPQ-AVASVTEQLFSLGCHEVSLG--------DTIGR--GTPD-TVAAMLDAVLAIAPA 199 (295)
T ss_dssp EECCHH-HHHHHHHHHHHHTCSEEEEE--------ETTSC--CCHH-HHHHHHHHHHTTSCG
T ss_pred CCCCHH-HHHHHHHHHHhcCCCEEEec--------CCCCC--cCHH-HHHHHHHHHHHhCCC
Confidence 688885 69999999999999998884 33443 1222 345678888888885
No 313
>1s4d_A Uroporphyrin-III C-methyltransferase; tetrapyrrole biosynthesis, cobalamin, SAM, SAH, uroporphyrin methyltransferase; HET: SAH; 2.70A {Pseudomonas denitrificans} SCOP: c.90.1.1
Probab=42.00 E-value=74 Score=29.80 Aligned_cols=92 Identities=18% Similarity=0.147 Sum_probs=57.2
Q ss_pred cCCCCCHHHHHHHHHHHCCCeEEEeeec-----ccCCCCCCcceeecCCCcc--ccHHHHHHHHHHHHHHHHcCCCeecC
Q 014017 193 YNDNGLVPRTIWLLKDRYPDLVIYTDVA-----LDPYSSDGHDGIVREDGVI--MNDETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 193 ~n~~g~v~raIr~iK~~fPdl~IitDVc-----Lc~YTshGHcGIl~~~g~I--dND~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
-|++.+..+|+++|++. |+++. |.- |..+ .. ++-++.- |+- ....+.+.+.+..+.+++.|-+|+--
T Consensus 25 Gd~~lLTl~A~~~L~~A--DvV~~-d~~~~~~ll~~~-~~-~~~~~~~-~k~~~~~~~~~~~i~~~l~~~~~~G~~Vv~L 98 (280)
T 1s4d_A 25 GDPGLLTLHAANALRQA--DVIVH-DALVNEDCLKLA-RP-GAVLEFA-GKRGGKPSPKQRDISLRLVELARAGNRVLRL 98 (280)
T ss_dssp SCTTSSBHHHHHHHHHC--SEEEE-CSCSCTTGGGGS-ST-TCCEEEC-SCCC--CCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHHHhC--CEEEE-cCCCCHHHHHhc-cC-CCEEEec-cccccccccCHHHHHHHHHHHHhCCCeEEEE
Confidence 57788999999999987 66664 321 1111 11 1112210 110 11234556777778889999888877
Q ss_pred CC---CCCchHHHHHHHHHHCCCccceee
Q 014017 266 SD---MMDGRVGAIRAALDAEGFQHVSIM 291 (432)
Q Consensus 266 SD---MMDGrV~aIR~aLD~~Gf~~v~Im 291 (432)
++ +.=|+-+.+.+.|.++|+ ++-|+
T Consensus 99 ~~GDP~i~g~g~~l~~~l~~~gi-~vevi 126 (280)
T 1s4d_A 99 KGGDPFVFGRGGEEALTLVEHQV-PFRIV 126 (280)
T ss_dssp ESBCTTSSSSHHHHHHHHHTTTC-CEEEE
T ss_pred cCCCCccccCHHHHHHHHHHCCC-CEEEE
Confidence 66 233888899999999986 45444
No 314
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=41.81 E-value=74 Score=30.32 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=35.1
Q ss_pred hHHHHHHHhh-CCCCeEEE---Ee---chhhHHHHHHHHCCCc-----hh--hHHHHHHHHHHHHcCccEe
Q 014017 359 LDVIRLLRDK-YPLPIAAY---QV---SGEYSMIKAGGALKMI-----DE--QRVMMESLMCLRRAGADII 415 (432)
Q Consensus 359 LDII~~vk~~-~~lPvaaY---qV---SGEYaMikaAa~~G~i-----d~--~~~~~EsL~~ikRAGAd~I 415 (432)
+|+|+++|++ .++|+... +. -|.-..++.++++|.= |+ ++ ..|....+++.|-+.|
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee-~~~~~~~~~~~gl~~i 152 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEE-SAPFSKAAKAHGIAPI 152 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGG-CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhh-HHHHHHHHHHcCCeEE
Confidence 8999999988 78998763 21 2444456666666631 11 22 3566666777777755
No 315
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=41.77 E-value=50 Score=31.92 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=37.9
Q ss_pred HHHHHhchhcC--CcEEEEcCCC----chhHHHHHHHhhCC-CCeEEEEechhhHHHHHHHHCC-CchhhHHHHHHHHHH
Q 014017 336 LVEAQADESEG--ADILLVKPGL----PYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALK-MIDEQRVMMESLMCL 407 (432)
Q Consensus 336 lre~~~Di~EG--AD~lMVKPal----~YLDII~~vk~~~~-lPvaaYqVSGEYaMikaAa~~G-~id~~~~~~EsL~~i 407 (432)
++.+..=++.| +|++-+-.+. ..+|+|+.+|+.++ .|+.. | ..+. |....+
T Consensus 108 ~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~----------------G~v~s~-----e~A~~a 166 (336)
T 1ypf_A 108 YEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIA----------------GNVGTP-----EAVREL 166 (336)
T ss_dssp HHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEE----------------EEECSH-----HHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEE----------------CCcCCH-----HHHHHH
Confidence 33444445677 8988764422 46899999999996 55542 2 2222 334455
Q ss_pred HHcCccEeeh
Q 014017 408 RRAGADIILT 417 (432)
Q Consensus 408 kRAGAd~IiT 417 (432)
..+|||.|+.
T Consensus 167 ~~aGad~Ivv 176 (336)
T 1ypf_A 167 ENAGADATKV 176 (336)
T ss_dssp HHHTCSEEEE
T ss_pred HHcCCCEEEE
Confidence 6778888765
No 316
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=41.62 E-value=66 Score=25.06 Aligned_cols=61 Identities=11% Similarity=0.114 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALK 392 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G 392 (432)
..|..||+.... ++..|++++= |++.=+|+++.+++.. ..|+....-..+......+...|
T Consensus 30 ~~~~~~a~~~~~---~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~ 94 (139)
T 2jk1_A 30 AQGAEAAIAILE---EEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDSASMMAAINDA 94 (139)
T ss_dssp ESSHHHHHHHHH---HSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHh---cCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCChHHHHHHHHhh
Confidence 567888887665 3468999986 5566688999999875 58998887777666666665544
No 317
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=41.44 E-value=36 Score=30.54 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=38.7
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc-hHHHHHHH
Q 014017 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG-RVGAIRAA 279 (432)
Q Consensus 201 raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG-rV~aIR~a 279 (432)
..|+.||+.+|+.-|+.|+-|. ++..+ .+-..++||||+|.--+.-.. .+..+.++
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~-----------------d~p~~------~~~~~~~aGad~i~vh~~~~~~~~~~~~~~ 104 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTT-----------------DGGAI------LSRMAFEAGADWITVSAAAHIATIAACKKV 104 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-----------------SCHHH------HHHHHHHHTCSEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcEEEEEeec-----------------ccHHH------HHHHHHhcCCCEEEEecCCCHHHHHHHHHH
Confidence 6899999999998888786431 11122 234557899999965554432 24555556
Q ss_pred HHHCC
Q 014017 280 LDAEG 284 (432)
Q Consensus 280 LD~~G 284 (432)
..++|
T Consensus 105 ~~~~g 109 (218)
T 3jr2_A 105 ADELN 109 (218)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 65555
No 318
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=41.33 E-value=71 Score=27.05 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+..... ...|+|++= |++.=+++++.+++.. ..|+......++...+..+.+.|..+. .+
T Consensus 37 ~~~~~~al~~~~~---~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~ 113 (215)
T 1a04_A 37 ASNGEQGIELAES---LDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPE 113 (215)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHH
T ss_pred eCCHHHHHHHHHh---cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHH
Confidence 5688898876643 458999886 5556689999999876 599999988888888888888887542 23
Q ss_pred HHHHHHHHHHHc
Q 014017 399 VMMESLMCLRRA 410 (432)
Q Consensus 399 ~~~EsL~~ikRA 410 (432)
.+.+.+..+.+-
T Consensus 114 ~L~~~i~~~~~~ 125 (215)
T 1a04_A 114 DLLKALHQAAAG 125 (215)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHcC
Confidence 455666555543
No 319
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=41.25 E-value=42 Score=26.41 Aligned_cols=63 Identities=14% Similarity=0.111 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhchh-cCCcEEEEcC---CCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 331 NYREALVEAQADES-EGADILLVKP---GLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 331 N~~EAlre~~~Di~-EGAD~lMVKP---al~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
+..|++..... . +-.|+|++=- .+.-+++++.+++.. .+|+..+.-..+-..+..+.+.|..|
T Consensus 53 ~~~~~~~~~~~--~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~ 120 (146)
T 4dad_A 53 GRAAQIVQRTD--GLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRD 120 (146)
T ss_dssp CCHHHHTTCHH--HHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEE
T ss_pred CHHHHHHHHHh--cCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCce
Confidence 44555544321 2 5678888874 445588999999876 59999887666555666666666543
No 320
>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=41.22 E-value=1.7e+02 Score=31.43 Aligned_cols=109 Identities=14% Similarity=0.145 Sum_probs=66.4
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCC------C---CcccCcCcCCCCC----------------H---HHHH
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDAL------K---SPTGDEAYNDNGL----------------V---PRTI 203 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~------K---d~~gs~A~n~~g~----------------v---~raI 203 (432)
+-++. ++.+.+..+.++||++|-|-|+-+... | +..++..|++-+. . .+.|
T Consensus 201 ~Gt~~-gl~~~l~yLk~LGvt~V~L~Pi~~~~~~~~~~~~~~~g~~~~wGY~~~dy~~~~~~yGt~~~~~~~~~efk~lV 279 (750)
T 1bf2_A 201 RGTYY-GAGLKASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMV 279 (750)
T ss_dssp TTSHH-HHHHTHHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHH
T ss_pred CcCHH-HHHHHHHHHHHcCCCEEEECCcccCccccccccccccccccccCcCcccccccCccccCCCCCccHHHHHHHHH
Confidence 33453 688889999999999999987633211 1 1113334543332 2 2344
Q ss_pred HHHHHHCCCeEEEeeecccCCCCCCcce-------------------eec--CC-C------------ccccHHHHHHHH
Q 014017 204 WLLKDRYPDLVIYTDVALDPYSSDGHDG-------------------IVR--ED-G------------VIMNDETVHQLC 249 (432)
Q Consensus 204 r~iK~~fPdl~IitDVcLc~YTshGHcG-------------------Il~--~~-g------------~IdND~Tl~~La 249 (432)
++++++ .|-||-||-+-+....+++| ..+ .+ + ...|.+..+.|.
T Consensus 280 ~~~H~~--Gi~VilDvV~NH~~~~~~~~~~d~~~~p~~~~~~~d~~~~y~~~~~~~~~~~~~g~~~~ln~~~p~V~~~i~ 357 (750)
T 1bf2_A 280 QAFHNA--GIKVYMDVVYNHTAEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIV 357 (750)
T ss_dssp HHHHHT--TCEEEEEECCSSCTTCSBSSSSCSSCBBCSSHHHHHHHHHBCBCTTSSSBCCSSSSSCCBCTTSHHHHHHHH
T ss_pred HHHHHC--CCEEEEEEecccccCcccccccccccCCCcccccCCCCcceEECCCCCceecCCCcCCccccCCHHHHHHHH
Confidence 444444 79999999987765555544 111 00 1 134567778888
Q ss_pred HHHHHHHH-cCCCee
Q 014017 250 KQAVSQAR-AGADVV 263 (432)
Q Consensus 250 k~Avs~A~-AGADiV 263 (432)
+.+.-.++ -|+|-+
T Consensus 358 d~l~~W~~e~gvDGf 372 (750)
T 1bf2_A 358 DSLAYWANTMGVDGF 372 (750)
T ss_dssp HHHHHHHHTSCCCEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 88888887 798843
No 321
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=41.20 E-value=45 Score=32.16 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=68.9
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC--------CCchHHHHHHHHHHCCCccceeecchhhhccccchhh
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM--------MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPF 305 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM--------MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPF 305 (432)
++||.||-+. ++.|.+ -+.++|+|-|.+.+. .+=|...++.+.+..+ .+++|+.-.
T Consensus 20 ~~dg~iD~~~-l~~lv~---~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~-grvpViaGv----------- 83 (311)
T 3h5d_A 20 HEDGSINFDA-IPALIE---HLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVN-GRVPLIAGV----------- 83 (311)
T ss_dssp CTTSSBCTTH-HHHHHH---HHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSC-SSSCEEEEC-----------
T ss_pred CCCCCcCHHH-HHHHHH---HHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC-CCCcEEEeC-----------
Confidence 3467787544 333333 455899998876653 3356677777777654 356666532
Q ss_pred hhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCC-cEEEEcCCCch-------hHHHHHHHhhCCCCeEEEE
Q 014017 306 REALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGA-DILLVKPGLPY-------LDVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 306 RdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGA-D~lMVKPal~Y-------LDII~~vk~~~~lPvaaYq 377 (432)
| -.|.+|++..+..=.+-|| |.+||=|-..| .+-.+.+.+..++||.-|+
T Consensus 84 ----------g------------~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 141 (311)
T 3h5d_A 84 ----------G------------TNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYN 141 (311)
T ss_dssp ----------C------------CSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ----------C------------CcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 1 2256777766654344487 99998764332 4445567778899999999
Q ss_pred ech
Q 014017 378 VSG 380 (432)
Q Consensus 378 VSG 380 (432)
+-|
T Consensus 142 ~P~ 144 (311)
T 3h5d_A 142 IPG 144 (311)
T ss_dssp CHH
T ss_pred ccc
Confidence 743
No 322
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=41.06 E-value=36 Score=26.59 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC---CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ...|+|++- |++.=+++++.+|+.. .+|+....-..+-..+..+.+.|..+
T Consensus 32 ~~~~~~a~~~~~~---~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~ 101 (140)
T 3n53_A 32 SKNEKEALEQIDH---HHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADD 101 (140)
T ss_dssp ESSHHHHHHHHHH---HCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSE
T ss_pred eCCHHHHHHHHhc---CCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCe
Confidence 5688898887753 468999997 4555688999999864 69999887766655555566666543
No 323
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=40.87 E-value=31 Score=30.09 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchh------hHH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE------QRV 399 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~------~~~ 399 (432)
..|..||+.... ++..|+|++= |++.-+++++.+++...+|+....-..+...+..+.+.|..|. .+.
T Consensus 35 ~~~~~~al~~l~---~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 111 (238)
T 2gwr_A 35 IGDGTQALTAVR---ELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111 (238)
T ss_dssp ECCGGGHHHHHH---HHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHH
T ss_pred ECCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHH
Confidence 345566665543 2357888875 6666789999999887999999988888887888888887553 234
Q ss_pred HHHHHHHHHH
Q 014017 400 MMESLMCLRR 409 (432)
Q Consensus 400 ~~EsL~~ikR 409 (432)
+.+.+..+.+
T Consensus 112 L~~~i~~~~~ 121 (238)
T 2gwr_A 112 LVARVRARLR 121 (238)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 324
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=40.73 E-value=1.2e+02 Score=25.76 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+.... +...|+|++= |.+.=+++++.+++.. .+|+....-..+...+..+.+.|..+. .+
T Consensus 32 ~~~~~~a~~~~~---~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 108 (225)
T 1kgs_A 32 CYDGEEGMYMAL---NEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLR 108 (225)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHH
T ss_pred ECCHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHH
Confidence 457788886654 3468999875 5666789999999875 699999988888888888888887542 23
Q ss_pred HHHHHHHHHHH
Q 014017 399 VMMESLMCLRR 409 (432)
Q Consensus 399 ~~~EsL~~ikR 409 (432)
.+.+.+..+.+
T Consensus 109 ~l~~~i~~~~~ 119 (225)
T 1kgs_A 109 ELIARVRALIR 119 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555443
No 325
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=40.28 E-value=1.2e+02 Score=23.13 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
..|..||+..... +..|+|++- |.+.-+++++.+|+. ..+|+....-..+-.. ..+.+.|.
T Consensus 33 ~~~~~~a~~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~-~~~~~~g~ 99 (133)
T 3nhm_A 33 AADGASGLQQALA---HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVP 99 (133)
T ss_dssp ESSHHHHHHHHHH---SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC------TTSCCC
T ss_pred ECCHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhH-HHHhhcCC
Confidence 5578888877653 568999997 555678999999985 2699988765444333 44445553
No 326
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=40.03 E-value=41 Score=26.49 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEe--chhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQV--SGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqV--SGEYaMikaAa~~G~i 394 (432)
..|..||+...... ..-|+|++= |++.=+++++.+|+..+.|+...-. ..+...+..+.+.|..
T Consensus 45 ~~~~~~al~~l~~~--~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~~~ga~ 113 (145)
T 3kyj_B 45 AANGQEALDKLAAQ--PNVDLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARARELGAD 113 (145)
T ss_dssp ESSHHHHHHHHHHC--TTCCEEEECTTSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHHHTTCS
T ss_pred ECCHHHHHHHHhcC--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHHhCCCC
Confidence 67889998877542 158999986 5566689999999988888777655 2223334445555543
No 327
>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha}
Probab=39.64 E-value=24 Score=34.11 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=44.5
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
++.+ ++.+...++.+.|-.-|=|.. +|+.|...+++ ....+.+..||++.||++|-
T Consensus 27 vTpe-Eia~~A~~~~~AGAaivHlHv------Rd~~G~~s~d~-~~~~e~~~~IR~~~pd~ii~ 82 (275)
T 3no5_A 27 ITVS-EQVESTQAAFEAGATLVHLHV------RNDDETPTSNP-DRFALVLEGIRKHAPGMITQ 82 (275)
T ss_dssp CSHH-HHHHHHHHHHHHTCCEEEECE------ECTTSCEECCH-HHHHHHHHHHHHHSTTCEEE
T ss_pred CCHH-HHHHHHHHHHHccCcEEEEee------cCCCCCcCCCH-HHHHHHHHHHHHhCCCeEEE
Confidence 4554 699999999999998888854 44457777755 46788999999999998874
No 328
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=39.37 E-value=14 Score=33.74 Aligned_cols=62 Identities=23% Similarity=0.145 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHH
Q 014017 346 GADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAAR 425 (432)
Q Consensus 346 GAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~ 425 (432)
|++.+-+.-...--+.|+.+++ .+++|.+|.|- .+ |.+..+.+.|+|.|||-+-..+.+
T Consensus 184 ~~~~i~~~~~~~~~~~v~~~~~-~G~~v~~wTvn----------------~~----~~~~~l~~~GvdgI~TD~p~~~~~ 242 (247)
T 2otd_A 184 GCVSIHLNHKLLDKARVMQLKD-AGLRILVYTVN----------------KP----QHAAELLRWGVDCICTDAIDVIGP 242 (247)
T ss_dssp TCSEEEEEGGGCCHHHHHHHHH-TTCEEEEECCC----------------CH----HHHHHHHHHTCSEEEESCTTTSCT
T ss_pred CCeEEecChHhCCHHHHHHHHH-CCCEEEEEccC----------------CH----HHHHHHHHcCCCEEEeCCHHHHHH
Confidence 6787765433333467777775 68999999983 22 334556788999999988666555
Q ss_pred HHh
Q 014017 426 CLC 428 (432)
Q Consensus 426 wL~ 428 (432)
+|+
T Consensus 243 ~l~ 245 (247)
T 2otd_A 243 NFT 245 (247)
T ss_dssp TCC
T ss_pred HHh
Confidence 554
No 329
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=39.28 E-value=26 Score=32.40 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=29.3
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhh
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDK 368 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~ 368 (432)
--=+| +.|..|+++.++. ....+|+ +|+++.+ .++|+.+|+.
T Consensus 18 ilalD----~~~l~~~~~~~~~-~~~~v~~--~Kv~~d~~~~~G~~~v~~lr~~ 64 (245)
T 1eix_A 18 VVALD----YHNRDDALAFVDK-IDPRDCR--LKVGKEMFTLFGPQFVRELQQR 64 (245)
T ss_dssp EEEEC----CSSHHHHHHHHTT-SCTTTCE--EEEEHHHHHHHHHHHHHHHHHT
T ss_pred EEEEC----CCCHHHHHHHHHH-hCccCcE--EEEcHHHHHHhCHHHHHHHHHC
Confidence 34478 8899988776542 2233676 8998766 5788888886
No 330
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=39.27 E-value=1.7e+02 Score=26.98 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC-------------C
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP-------------Y 224 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~-------------Y 224 (432)
.+.+-++++.+.|++.|++.|... -.|++- + -+++.+..+++.||++.+..-..-++ +
T Consensus 61 si~~aL~~l~~~G~~~vvV~Pl~l-----~~G~~~---~-di~~~v~~~~~~~~~i~~~~pl~~~~~~~~~l~~~l~~~~ 131 (264)
T 2xwp_A 61 TPLQALQKLAAQGYQDVAIQSLHI-----INGDEY---E-KIVREVQLLRPLFTRLTLGVPLLSSHNDYVQLMQALRQQM 131 (264)
T ss_dssp CHHHHHHHHHHHTCCEEEEEECCS-----SSSHHH---H-HHHHHHHHHGGGCSEEEEECCSSCSHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhCCCCEEEEEeCcc-----cCcHHH---H-HHHHHHHHHHhhCCceEEecCCCCCHHHHHHHHHHHHHhc
Confidence 466778899999999999988743 124322 2 56778888888899876643222221 1
Q ss_pred CCC-Ccceeec-CCCccccHHHHHHHHHHHHHHHHcCCCe-ecCCCCCCchHHHHHHHHHHCCCccceeecch
Q 014017 225 SSD-GHDGIVR-EDGVIMNDETVHQLCKQAVSQARAGADV-VSPSDMMDGRVGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 225 Tsh-GHcGIl~-~~g~IdND~Tl~~Lak~Avs~A~AGADi-VAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYS 294 (432)
... ...+++- -+|.=+. .-....+.+....+.|-.+ ++.-.. .=.+...=+.|.+.|.++|.|+.|.
T Consensus 132 ~~~~~~~~lvl~gHGs~~~--~~~~~~~~a~~l~~~~~~v~~g~~e~-~P~~~~~l~~l~~~G~~~v~v~P~~ 201 (264)
T 2xwp_A 132 PSLRQTEKVVFMGHGASHH--AFAAYACLDHMMTAQRFPARVGAVES-YPEVDILIDSLRDEGVTGVHLMPLM 201 (264)
T ss_dssp CCCCTTEEEEEEECCCSSG--GGHHHHHHHHHHHHTTCSEEEEESSS-SSCHHHHHHHHHHHTCCEEEEEECS
T ss_pred cccCCCCeEEEEECCCCch--hhHHHHHHHHHHHhhCCCEEEEEeCC-CCCHHHHHHHHHHCCCCEEEEEeee
Confidence 111 1234442 2343332 2223334444444444222 232221 3345555556666778778887773
No 331
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=39.18 E-value=57 Score=30.95 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=91.8
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCC-----------
Q 014017 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDM----------- 268 (432)
Q Consensus 202 aIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDM----------- 268 (432)
-.|.|++..|+ ++-+.|.+-+|| |.-.-++=.+...+.+-.+.++|||+|.=..-
T Consensus 20 v~~~i~~~lP~~~~iy~~D~a~~PY------------G~ks~~~i~~~~~~~~~~L~~~g~~~IVIACNTa~~~al~~lr 87 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLGDTARCPY------------GPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIR 87 (269)
T ss_dssp HHHHHHHHCTTCCEEEEECGGGCCC------------TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEeCCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHH
Confidence 46788888995 888899999999 22233344444555556667789998742210
Q ss_pred ------CCchHH-HHHHHHHHCCCccceeecchhhhccccchhhhhhhhC--------CCCCCCc-ccccccccCCCCCH
Q 014017 269 ------MDGRVG-AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDS--------NPRFGDK-KTYVIRVIELYANY 332 (432)
Q Consensus 269 ------MDGrV~-aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~S--------ap~~gDR-ktYQmd~~~~p~N~ 332 (432)
+=|-+. +++.++...+..+|+||+=.+--.|.+|.-.=+..+. .|.+-.- +.-+.+ ....
T Consensus 88 ~~~~iPvigii~pa~~~A~~~~~~~~IGVLaT~~Ti~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~----~~~~ 163 (269)
T 3ist_A 88 EKLDIPVIGVIQPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYK----SAIA 163 (269)
T ss_dssp HHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTT----SHHH
T ss_pred HhcCCCEEeecHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCC----CHHH
Confidence 114333 7777887767788999988777777777432222211 0000000 011111 1134
Q ss_pred HHHHHHHHhch-hcCCcEEEEcCCCchhHHHHHHHhhCC--CCeEEEEechhhHHHHH
Q 014017 333 REALVEAQADE-SEGADILLVKPGLPYLDVIRLLRDKYP--LPIAAYQVSGEYSMIKA 387 (432)
Q Consensus 333 ~EAlre~~~Di-~EGAD~lMVKPal~YLDII~~vk~~~~--lPvaaYqVSGEYaMika 387 (432)
++.+++....+ ++|+|.|+.==. -|-=+...+++.++ +|+ |.+-.++.+.
T Consensus 164 ~~~l~~~l~~l~~~g~D~iVLGCT-h~pll~~~i~~~~~~~v~v----IDs~~~~a~~ 216 (269)
T 3ist_A 164 KKVVAESLLPLKSTKIDTVILGCT-HYPLLKPIIENFMGDGVAV----INSGEETASE 216 (269)
T ss_dssp HHHHHHHHGGGGGSCCCEEEECST-TGGGGHHHHHHHHCTTSEE----ECTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHHHcCCCCeE----ECcHHHHHHH
Confidence 56666666666 468998876432 23224455555442 443 3444444444
No 332
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=39.14 E-value=3.7e+02 Score=28.32 Aligned_cols=188 Identities=20% Similarity=0.192 Sum_probs=97.6
Q ss_pred eEEEeeCCCCcccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC
Q 014017 132 PLFIHEGEEDTPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP 211 (432)
Q Consensus 132 PlFV~eg~~~~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP 211 (432)
.|.|.|-.= +.=.+-+|..+++.+ +.++.++.+.++|+.++-.-+ |.. -|.. --..+++ --..++.|++..|
T Consensus 24 ~V~I~DtTL-RDG~Qs~~~~~~~te-dKl~Ia~~L~~~Gv~~IE~G~--pat-F~~~-~rfl~~d--~~e~lr~l~~~~~ 95 (539)
T 1rqb_A 24 EVGITELVL-RDAHQSLMATRMAME-DMVGACADIDAAGYWSVECWG--GAT-YDSC-IRFLNED--PWERLRTFRKLMP 95 (539)
T ss_dssp ECEEEECTT-THHHHHHSTTCCCGG-GTGGGHHHHHHTTCSEEEEEE--TTH-HHHH-HHTSCCC--HHHHHHHHHHHCT
T ss_pred ceEEEECCC-CchhccCCCCCCCHH-HHHHHHHHHHHcCCCEEEeCc--ccc-cccc-hhccCCC--HHHHHHHHHHhCC
Confidence 366776331 111123344456664 588899999999999998832 110 0000 0000111 1356888888888
Q ss_pred CeEEEeee---cccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeec----CCCCCCchHHHHHHHHHHCC
Q 014017 212 DLVIYTDV---ALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVS----PSDMMDGRVGAIRAALDAEG 284 (432)
Q Consensus 212 dl~IitDV---cLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVA----PSDMMDGrV~aIR~aLD~~G 284 (432)
+..+.+=+ .+.-|+. + . ..+ ++.+++.+ +++|+|+|. -||. + .+...-+.+.+.|
T Consensus 96 ~~~l~~L~R~~N~~G~~~------y-p-ddv-~~~~ve~a-------~~aGvd~vrIf~s~sd~-~-ni~~~i~~ak~~G 157 (539)
T 1rqb_A 96 NSRLQMLLRGQNLLGYRH------Y-N-DEV-VDRFVDKS-------AENGMDVFRVFDAMNDP-R-NMAHAMAAVKKAG 157 (539)
T ss_dssp TSCEEEEECGGGTTSSSC------C-C-HHH-HHHHHHHH-------HHTTCCEEEECCTTCCT-H-HHHHHHHHHHHTT
T ss_pred CCEEEEEeccccccCccc------C-c-ccc-cHHHHHHH-------HhCCCCEEEEEEehhHH-H-HHHHHHHHHHHCC
Confidence 75444322 2333421 0 1 011 45555554 367999876 4444 2 2333333445677
Q ss_pred CccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-------CCCc
Q 014017 285 FQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-------PGLP 357 (432)
Q Consensus 285 f~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~ 357 (432)
..-...+||. + + + .| + | +..+.-+..=++-|||.|-+| |. .
T Consensus 158 ~~v~~~i~~~--~-----~---------~------~~--~----~---e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~-~ 205 (539)
T 1rqb_A 158 KHAQGTICYT--I-----S---------P------VH--T----V---EGYVKLAGQLLDMGADSIALKDMAALLKPQ-P 205 (539)
T ss_dssp CEEEEEEECC--C-----S---------T------TC--C----H---HHHHHHHHHHHHTTCSEEEEEETTCCCCHH-H
T ss_pred CeEEEEEEee--e-----C---------C------CC--C----H---HHHHHHHHHHHHcCCCEEEeCCCCCCcCHH-H
Confidence 6322234553 1 1 0 11 2 2 222222222234699999877 44 3
Q ss_pred hhHHHHHHHhhC--CCCeEEEEe
Q 014017 358 YLDVIRLLRDKY--PLPIAAYQV 378 (432)
Q Consensus 358 YLDII~~vk~~~--~lPvaaYqV 378 (432)
+-++|+.+++++ ++||. +|-
T Consensus 206 v~~lv~~l~~~~p~~i~I~-~H~ 227 (539)
T 1rqb_A 206 AYDIIKAIKDTYGQKTQIN-LHC 227 (539)
T ss_dssp HHHHHHHHHHHHCTTCCEE-EEE
T ss_pred HHHHHHHHHHhcCCCceEE-EEe
Confidence 479999999998 68874 454
No 333
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Probab=38.96 E-value=26 Score=35.90 Aligned_cols=92 Identities=16% Similarity=0.280 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhchhcCCcEEEEcCCCc----hhHHHHHHHhhCCCCe-EEEEech----------h-hHHHHHHHHC
Q 014017 328 LYANYREALVEAQADESEGADILLVKPGLP----YLDVIRLLRDKYPLPI-AAYQVSG----------E-YSMIKAGGAL 391 (432)
Q Consensus 328 ~p~N~~EAlre~~~Di~EGAD~lMVKPal~----YLDII~~vk~~~~lPv-aaYqVSG----------E-YaMikaAa~~ 391 (432)
...+.+|++.++....+.|||+|=..=... -.+-|+.+++..++|+ +.|.-.. | +..++.|.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~ 91 (523)
T 2o7s_A 12 MADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMEL 91 (523)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHHHHHHHHHHHh
Confidence 366889999998888899999985543311 0235677777788995 3443221 2 4567777765
Q ss_pred C--CchhhHHHHHH-HHHH---HHcCccEeehhc
Q 014017 392 K--MIDEQRVMMES-LMCL---RRAGADIILTYF 419 (432)
Q Consensus 392 G--~id~~~~~~Es-L~~i---kRAGAd~IiTYf 419 (432)
| ++|-+--.-|. +..+ ++.|..+|++|+
T Consensus 92 ~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H 125 (523)
T 2o7s_A 92 GADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125 (523)
T ss_dssp TCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHhccCCCEEEEEcc
Confidence 5 45544222222 2222 334788999997
No 334
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=38.85 E-value=78 Score=30.06 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcC-------C---CchhHHHHHHHhhCCCCeEE
Q 014017 331 NYREALVEAQADESEGADILLVKP-------G---LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKP-------a---l~YLDII~~vk~~~~lPvaa 375 (432)
+.++|.+ -++.|+|.|.+-. + .+-++.++++++..++||.+
T Consensus 127 t~~~a~~----~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPvia 177 (328)
T 2gjl_A 127 AVRHALK----AERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIA 177 (328)
T ss_dssp SHHHHHH----HHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEE
T ss_pred CHHHHHH----HHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEE
Confidence 4455443 3568999999942 1 14578999999989999875
No 335
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3
Probab=38.49 E-value=34 Score=31.31 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=43.3
Q ss_pred hcCCcEEEEcCCCc-hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHH-HHHcCccEeehhcHH
Q 014017 344 SEGADILLVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMC-LRRAGADIILTYFAL 421 (432)
Q Consensus 344 ~EGAD~lMVKPal~-YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~-ikRAGAd~IiTYfA~ 421 (432)
+-|+|.+-+.-... --+.|+.+++ .+++|.+|-|- .+ |.+.. +.+.|+|.|||-+-.
T Consensus 168 ~~~~~~i~~~~~~~~~~~~v~~~~~-~G~~v~~wTvn----------------~~----~~~~~~l~~~GvdgIiTD~p~ 226 (248)
T 1zcc_A 168 VHHASIIEITPAQMRRPGIIEASRK-AGLEIMVYYGG----------------DD----MAVHREIATSDVDYINLDRPD 226 (248)
T ss_dssp TTCCSEEEECHHHHHSHHHHHHHHH-HTCEEEEECCC----------------CC----HHHHHHHHHSSCSEEEESCHH
T ss_pred HcCCCEEEecHHHhCCHHHHHHHHH-CCCEEEEECCC----------------CH----HHHHHHHHHcCCCEEEECCHH
Confidence 35788876532221 2356666664 58999999883 22 23345 667899999999988
Q ss_pred HHHHHHhc
Q 014017 422 QAARCLCG 429 (432)
Q Consensus 422 ~~a~wL~~ 429 (432)
.+.+++++
T Consensus 227 ~~~~~~~~ 234 (248)
T 1zcc_A 227 LFAAVRSG 234 (248)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 336
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=38.44 E-value=1.7e+02 Score=28.79 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
...+.++.+.+.|+..|.|-. . . | ++ ..+.+.|+.+|+.+|++-|+.
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~--~--~----g----~~-~~~~e~i~~ir~~~~~~pviv 199 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDS--A--H----G----HS-TRIIELIKKIKTKYPNLDLIA 199 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECC--S--C----C----SS-HHHHHHHHHHHHHCTTCEEEE
T ss_pred hHHHHHHHHHHCCCCEEEEeC--C--C----C----Ch-HHHHHHHHHHHHHCCCCeEEE
Confidence 357778889999999887721 1 1 1 12 345678899999998877764
No 337
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=38.15 E-value=43 Score=35.26 Aligned_cols=124 Identities=12% Similarity=0.172 Sum_probs=80.6
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecc
Q 014017 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVAL 221 (432)
Q Consensus 154 si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcL 221 (432)
++. ++.+.+..+.++||++|-|-|+-+- ....+..|++-+. +.+.|+.++++ .|-||.|+.+
T Consensus 152 ~~~-~~~~~L~yl~~lGv~~v~l~Pi~~~---~~~~~~GY~~~~~~~~~~~~G~~~~~~~lv~~~H~~--Gi~VilD~V~ 225 (618)
T 3m07_A 152 TFR-AAIAKLPYLAELGVTVIEVMPVAQF---GGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGY--GLSVVLDIVL 225 (618)
T ss_dssp SHH-HHHTTHHHHHHHTCCEEEECCCEEC---SSSCCCSTTCCEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred CHH-HHHHHHHHHHHcCCCEEEeCChhcc---CCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHC--CCEEEEeecC
Confidence 343 6888999999999999999775211 1112234544333 45666666665 6999999998
Q ss_pred cCCCCCCcc------eeecCC-----C---ccccHHHHHHHHHHHHHHH-HcCCCee---cCCCC----CCchHHHHHHH
Q 014017 222 DPYSSDGHD------GIVRED-----G---VIMNDETVHQLCKQAVSQA-RAGADVV---SPSDM----MDGRVGAIRAA 279 (432)
Q Consensus 222 c~YTshGHc------GIl~~~-----g---~IdND~Tl~~Lak~Avs~A-~AGADiV---APSDM----MDGrV~aIR~a 279 (432)
-....+++. .....+ | ...|.+..+.|.+.+.-.. +-|+|-+ +...| -..-+..+++.
T Consensus 226 NH~~~~~~~~~~~~~~~~~~~~~~~wg~~ln~~~p~V~~~i~~~~~~w~~~~gvDGfR~D~~~~~~~~~~~~f~~~l~~~ 305 (618)
T 3m07_A 226 NHFGPEGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLVEIAQR 305 (618)
T ss_dssp SCCCSSSCCHHHHCGGGEEEEEEETTEEEECTTSHHHHHHHHHHHHHHHHHTTCSEEEETTGGGCCCCSSSCHHHHHHHH
T ss_pred ccCCCCcccccccCchhhcCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhCccEEEecchhhhcccchHHHHHHHHHH
Confidence 766544321 011000 0 2357888888999999888 7899865 34444 33567888888
Q ss_pred HHHC
Q 014017 280 LDAE 283 (432)
Q Consensus 280 LD~~ 283 (432)
+.+.
T Consensus 306 v~~~ 309 (618)
T 3m07_A 306 IRED 309 (618)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 338
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=38.13 E-value=43 Score=31.77 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHcCC--CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014017 158 GLVQEVAKARDVGV--NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~~~GI--~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.+...++.+.+.|. ++|.+.-.|- -+.+++.|.+.||++.|+|. ++|+
T Consensus 171 T~~~ai~~L~~~G~~p~~I~~~~lva-----------------ap~g~~~l~~~~p~v~I~ta-~ID~ 220 (243)
T 1bd3_D 171 SVCKAIEVLLRLGVKEERIIFVNILA-----------------APQGIERVFKEYPKVRMVTA-AVDI 220 (243)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEE-----------------CHHHHHHHHHHCTTSEEEEE-EECS
T ss_pred HHHHHHHHHHHcCCCcceEEEEEEEe-----------------CHHHHHHHHHHCCCCEEEEE-EecC
Confidence 47888999999999 8888755432 14589999999999999987 4554
No 339
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=38.02 E-value=60 Score=32.47 Aligned_cols=40 Identities=28% Similarity=0.192 Sum_probs=28.3
Q ss_pred HHhchhcCCcEEEEcC--C--CchhHHHHHHHhhC-CCCeEEEEe
Q 014017 339 AQADESEGADILLVKP--G--LPYLDVIRLLRDKY-PLPIAAYQV 378 (432)
Q Consensus 339 ~~~Di~EGAD~lMVKP--a--l~YLDII~~vk~~~-~lPvaaYqV 378 (432)
+.+=++.|+|+|.+== + ...+|+|+.+|+.+ ++||.+=+|
T Consensus 105 ~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V 149 (361)
T 3r2g_A 105 AEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNV 149 (361)
T ss_dssp HHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCc
Confidence 3333567999998831 1 12368999999987 799998555
No 340
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=37.91 E-value=60 Score=29.38 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=28.2
Q ss_pred HHHHHHHHhchhcCCcEEEE-cCC------CchhHHHHHHHhhCCCCeEE
Q 014017 333 REALVEAQADESEGADILLV-KPG------LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMV-KPa------l~YLDII~~vk~~~~lPvaa 375 (432)
.|..++. .+.|||.|.+ =+. ...++.|+++++.+++|+.+
T Consensus 33 ~~~a~~~---~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~ 79 (266)
T 2w6r_A 33 RDWVVEV---EKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 79 (266)
T ss_dssp HHHHHHH---HHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHH---HHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEE
Confidence 4444444 3579999886 111 23489999999999999976
No 341
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=37.90 E-value=91 Score=27.32 Aligned_cols=88 Identities=16% Similarity=0.028 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEE-cCCCchhHHHHHHHhhCCCCeEE--EEechhhHHHHHHHHCCC--chhhHHHHHH
Q 014017 329 YANYREALVEAQADESEGADILLV-KPGLPYLDVIRLLRDKYPLPIAA--YQVSGEYSMIKAGGALKM--IDEQRVMMES 403 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMV-KPal~YLDII~~vk~~~~lPvaa--YqVSGEYaMikaAa~~G~--id~~~~~~Es 403 (432)
-.+..+....+..=++.|+|+|-+ -+....+..|+++++.+++|+.. -.+.-.+ -+..|.+.|. +-....-.+.
T Consensus 15 ~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~-~i~~a~~~Gad~V~~~~~~~~~ 93 (212)
T 2v82_A 15 GITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPE-QVDALARMGCQLIVTPNIHSEV 93 (212)
T ss_dssp TCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHH-HHHHHHHTTCCEEECSSCCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHH-HHHHHHHcCCCEEEeCCCCHHH
Confidence 445555555444445679999865 33445578888888888777543 2221122 3455555542 0000011233
Q ss_pred HHHHHHcCccEeeh
Q 014017 404 LMCLRRAGADIILT 417 (432)
Q Consensus 404 L~~ikRAGAd~IiT 417 (432)
+..+++.|.++++.
T Consensus 94 ~~~~~~~g~~~~~g 107 (212)
T 2v82_A 94 IRRAVGYGMTVCPG 107 (212)
T ss_dssp HHHHHHTTCEEECE
T ss_pred HHHHHHcCCCEEee
Confidence 44556667666655
No 342
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=37.77 E-value=46 Score=30.35 Aligned_cols=117 Identities=14% Similarity=0.108 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHCCC-ccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEE
Q 014017 272 RVGAIRAALDAEGF-QHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADIL 350 (432)
Q Consensus 272 rV~aIR~aLD~~Gf-~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~l 350 (432)
-+..+-+.|.+.|+ .+|.|.||....- --+|+ -.|.. +..|-.. ..+..+ ++ .-|++.+
T Consensus 116 ~~~~v~~~l~~~~~~~~v~~~Sf~~~~l----~~~~~---~~p~~--~~~~l~~----~~~~~~-~~------~~~~~~~ 175 (238)
T 3no3_A 116 AARLSVQMVKRMKLAKRTDYISFNMDAC----KEFIR---LCPKS--EVSYLNG----ELSPME-LK------ELGFTGL 175 (238)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHH---HCTTS--CEEECSS----CSCHHH-HH------HTTCCEE
T ss_pred HHHHHHHHHHHcCCcCCEEEEECCHHHH----HHHHH---HCCCC--eEEEEeC----CCCHHH-HH------HCCCceE
Confidence 45667777778887 4577777754322 12232 23331 2233332 112222 21 2366665
Q ss_pred EEcCCCch--hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHHHHHh
Q 014017 351 LVKPGLPY--LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCLC 428 (432)
Q Consensus 351 MVKPal~Y--LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a~wL~ 428 (432)
-....... -+.|+.+++ .+++|.+|.| |.. +.+..+.+.|+|.|||-+-..+.++|+
T Consensus 176 ~~~~~~~~~~~~~v~~~~~-~G~~v~~WTV----------------n~~----~~~~~l~~~GVdgIiTD~P~~~~~~l~ 234 (238)
T 3no3_A 176 DYHYKVLQSHPDWVKDCKV-LGMTSNVWTV----------------DDP----KLMEEMIDMGVDFITTDLPEETQKILH 234 (238)
T ss_dssp EEEHHHHHHSTTHHHHHHH-TTCEEEEECC----------------CSH----HHHHHHHHHTCSEEEESCHHHHHHHHH
T ss_pred eccHHhhhCCHHHHHHHHH-CCCEEEEECC----------------CCH----HHHHHHHHcCCCEEECCCHHHHHHHHH
Confidence 43322111 146666664 6899999988 332 344456677999999999999988886
Q ss_pred c
Q 014017 429 G 429 (432)
Q Consensus 429 ~ 429 (432)
+
T Consensus 235 ~ 235 (238)
T 3no3_A 235 S 235 (238)
T ss_dssp H
T ss_pred h
Confidence 5
No 343
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=37.66 E-value=74 Score=25.08 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..+|+.... ++..|+|++= |++.=+|+++.+++.. .+|+....-..+-.....+.+.|..+
T Consensus 35 ~~~~~~al~~~~---~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~ 102 (141)
T 3cu5_A 35 ADDGINAIQIAL---KHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIR 102 (141)
T ss_dssp ESSHHHHHHHHT---TSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC------CCCE
T ss_pred cccHHHHHHHHh---cCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHHhCCccE
Confidence 568888887664 2457999875 5566689999999866 58998876655544445555555544
No 344
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle, hydrolase; 2.00A {Geobacillus SP}
Probab=37.64 E-value=48 Score=33.90 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.++.+.+..+.++||++|-|-|+.+. +.....|+.-+. +.+.|+.++++ .|-||-|+-+-+
T Consensus 31 ~gi~~~ldyl~~lGv~~i~l~Pi~~~----~~~~~gY~~~dy~~id~~~Gt~~d~~~lv~~~h~~--Gi~vilD~V~NH 103 (555)
T 2ze0_A 31 RGIIEKLDYLVELGVDIVWICPIYRS----PNADNGYDISDYYAIMDEFGTMDDFDELLAQAHRR--GLKVILDLVINH 103 (555)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEEC----CCTTTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEEECSB
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccC----CCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEeccc
Confidence 36888899999999999999776332 112234444332 23445555554 799999998865
No 345
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=37.49 E-value=37 Score=32.81 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCC-eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHH
Q 014017 199 VPRTIWLLKDRYPD-LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIR 277 (432)
Q Consensus 199 v~raIr~iK~~fPd-l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR 277 (432)
+..+++..|+.+|+ ..|+.-|+ . + |+ + ++|+ ++|||+|--+-|--..+..++
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev~--t---------------l--ee-~----~~A~---~aGaD~I~ld~~~~~~l~~~v 237 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVECL--S---------------E--DE-A----TEAI---EAGADVIMLDNFKGDGLKMCA 237 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECS--S---------------S--HH-H----HHHH---HHTCSEEECCC----------
T ss_pred HHHHHHHHHHhcCcCCeEEEecC--C---------------H--HH-H----HHHH---HcCCCEEEECCCCHHHHHHHH
Confidence 67899999999875 33332111 0 1 21 1 1222 579999987776556777777
Q ss_pred HHHHHC--CCccceee
Q 014017 278 AALDAE--GFQHVSIM 291 (432)
Q Consensus 278 ~aLD~~--Gf~~v~Im 291 (432)
+.++.. ||.++.|.
T Consensus 238 ~~l~~~~~g~~~v~I~ 253 (294)
T 3c2e_A 238 QSLKNKWNGKKHFLLE 253 (294)
T ss_dssp -----------CCEEE
T ss_pred HHhcccccCCCCeEEE
Confidence 788877 78777764
No 346
>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A
Probab=37.08 E-value=17 Score=37.01 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred hhhHHHHHHHHHHHHcCccEeehh
Q 014017 395 DEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+..++|.+.+..+.+||||+|.|-
T Consensus 51 ~~Pe~V~~iH~~Yl~AGAdII~TN 74 (406)
T 1lt8_A 51 EHPEAVRQLHREFLRAGSNVMQTF 74 (406)
T ss_dssp HCHHHHHHHHHHHHHTTCSEEECS
T ss_pred cCHHHHHHHHHHHHHhCccceecc
Confidence 345789999999999999999873
No 347
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=37.08 E-value=64 Score=24.36 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 330 ANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
.|..||+.... ++..|++++= |++.-+++++.+++. ..+|+....-+++......+.+.|..|
T Consensus 33 ~~~~~a~~~~~---~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 101 (127)
T 2jba_A 33 EDYDSAVNQLN---EPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADD 101 (127)
T ss_dssp CSHHHHHTTCS---SSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTCCCSCSE
T ss_pred CCHHHHHHHHh---ccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHhcCCCe
Confidence 35555553322 2345777664 666678999999976 369999988777776666666666644
No 348
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=37.07 E-value=33 Score=33.61 Aligned_cols=107 Identities=15% Similarity=0.128 Sum_probs=64.0
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcc-------cCcCcCCC---------CCH---HHHHHHHHHHCCCe
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPT-------GDEAYNDN---------GLV---PRTIWLLKDRYPDL 213 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~-------gs~A~n~~---------g~v---~raIr~iK~~fPdl 213 (432)
++++ ++.++++.+.++|+++|-|-|+.+ ..++.. +...|++- |-. .+.|+.++++ .|
T Consensus 14 ~~~~-~i~~~l~yl~~lG~~~i~l~Pi~~-~~~~~~~~~~~~~~~~gY~~~~y~~~~~~~G~~~d~~~lv~~~h~~--Gi 89 (422)
T 1ua7_A 14 WSFN-TLKHNMKDIHDAGYTAIQTSPINQ-VKEGNQGDKSMSNWYWLYQPTSYQIGNRYLGTEQEFKEMCAAAEEY--GI 89 (422)
T ss_dssp BCHH-HHHHTHHHHHHTTCSEEEECCCEE-ECCTGGGCCBGGGGGGGGCEEEEEEEETTTEEHHHHHHHHHHHHTT--TC
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEeCCccc-cccCCcCcCccCCccccccceeeeccCCCCCCHHHHHHHHHHHHHC--CC
Confidence 3674 799999999999999999987421 112221 12334432 333 3444444444 69
Q ss_pred EEEeeecccCCCCCCcc----------------eeec-CC----------C----ccccHHHHHHHHHHHHHHHHcCCCe
Q 014017 214 VIYTDVALDPYSSDGHD----------------GIVR-ED----------G----VIMNDETVHQLCKQAVSQARAGADV 262 (432)
Q Consensus 214 ~IitDVcLc~YTshGHc----------------GIl~-~~----------g----~IdND~Tl~~Lak~Avs~A~AGADi 262 (432)
-||.|+-+-......+. .+.+ .+ | .-.|.+..+.|.+.+.-..+.|+|-
T Consensus 90 ~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~~~v~~~l~~~~~~w~~~gvDG 169 (422)
T 1ua7_A 90 KVIVDAVINHTTFDYAAISNEVKSIPNWTHGNTQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLERALNDGADG 169 (422)
T ss_dssp EEEEEECCSBCCSCTTTSCHHHHTSTTCEEECCBCCCTTCHHHHHHSBBTTBCEECTTSHHHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEeccCcccCCccccCccccCCcccccCCCCCCCcCchhcccccccCCCCccccCCHHHHHHHHHHHHHHHHcCCCE
Confidence 99999987654332211 1110 00 1 1236677888888888888889875
Q ss_pred e
Q 014017 263 V 263 (432)
Q Consensus 263 V 263 (432)
+
T Consensus 170 f 170 (422)
T 1ua7_A 170 F 170 (422)
T ss_dssp E
T ss_pred E
Confidence 4
No 349
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=37.04 E-value=31 Score=31.88 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhh-CCCCeEE-EEechhhH--HHHHHHHCCC------
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDK-YPLPIAA-YQVSGEYS--MIKAGGALKM------ 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~-~~lPvaa-YqVSGEYa--MikaAa~~G~------ 393 (432)
+.|..|+++.++. . |..+.++|+++.+ .++|+.+|+. +.+++=+ ..--|++. -++.+++.|.
T Consensus 13 ~~~l~~~~~~v~~-~--~~~v~~~Kv~~d~~~~~G~~~v~~lr~~~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vTvH 89 (246)
T 2yyu_A 13 FPSKQEVERFLRP-F--AGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVH 89 (246)
T ss_dssp CSSHHHHHHHHGG-G--TTSCCEEEECHHHHHHHTHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHHH-h--cccccEEEeCHHHHHHhCHHHHHHHHHCCCeEEEEeecccchHHHHHHHHHHHhcCCCEEEEE
Confidence 7888888876642 2 4334459999876 5788899886 3322211 11335542 3455555552
Q ss_pred -chhhHHHHHHHHHHHH
Q 014017 394 -IDEQRVMMESLMCLRR 409 (432)
Q Consensus 394 -id~~~~~~EsL~~ikR 409 (432)
.-....+.+.+..+++
T Consensus 90 ~~~g~~~l~~~~~~~~~ 106 (246)
T 2yyu_A 90 AAGGRRMMEAAIEGLDA 106 (246)
T ss_dssp GGGCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 0112334455566665
No 350
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=36.88 E-value=1.1e+02 Score=28.26 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc-------CCCch-hHHHHHHHhh--CCCCeEE-EEec--hhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK-------PGLPY-LDVIRLLRDK--YPLPIAA-YQVS--GEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~Y-LDII~~vk~~--~~lPvaa-YqVS--GEYaMikaAa~~G~id 395 (432)
+.|..|+++.+. +-|+|++=++ |.+.| .++|+.+|+. +++|+-+ ..|. +.| ++.++++|. |
T Consensus 16 ~~~l~~~i~~l~---~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~--i~~~~~aGa-d 89 (228)
T 3ovp_A 16 LANLGAECLRML---DSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQW--VKPMAVAGA-N 89 (228)
T ss_dssp GGGHHHHHHHHH---HTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGG--HHHHHHHTC-S
T ss_pred chhHHHHHHHHH---HcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHH--HHHHHHcCC-C
Confidence 778888888775 5689977662 33334 7999999998 4788775 3332 334 455566663 2
Q ss_pred h-------hHHHHHHHHHHHHcCccEeeh
Q 014017 396 E-------QRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 396 ~-------~~~~~EsL~~ikRAGAd~IiT 417 (432)
. ..-+.+.+..+|++|....++
T Consensus 90 ~itvH~Ea~~~~~~~i~~i~~~G~k~gva 118 (228)
T 3ovp_A 90 QYTFHLEATENPGALIKDIRENGMKVGLA 118 (228)
T ss_dssp EEEEEGGGCSCHHHHHHHHHHTTCEEEEE
T ss_pred EEEEccCCchhHHHHHHHHHHcCCCEEEE
Confidence 1 123567788888888777665
No 351
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=36.81 E-value=59 Score=37.07 Aligned_cols=214 Identities=14% Similarity=0.105 Sum_probs=123.0
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec-CCC
Q 014017 159 LVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR-EDG 237 (432)
Q Consensus 159 l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~-~~g 237 (432)
..+.++.+.+.|+.-|-+|--.++ --....+++.+|+.- -++-.++|.+.+ ++. ++.
T Consensus 629 ~~~~v~~a~~~Gvd~irif~~~sd-------------~~~~~~~~~~~~e~g----~~~~~~i~~~~~-----~~~pe~~ 686 (1150)
T 3hbl_A 629 IHKFVQESAKAGIDVFRIFDSLNW-------------VDQMKVANEAVQEAG----KISEGTICYTGD-----ILNPERS 686 (1150)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCC-------------GGGGHHHHHHHHHTT----CEEEEEEECCSC-----TTCTTTC
T ss_pred HHHHHHHHHhCCcCEEEEEeeCCH-------------HHHHHHHHHHHHHHh----hheeEEEeeccc-----ccChhhc
Confidence 566799999999999988853221 122356777887763 334455666532 232 122
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHHC-CC--ccceeecchhhhccccchhhh
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDAE-GF--QHVSIMSYTAKYASSFYGPFR 306 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~~-Gf--~~v~ImSYSaKyASsfYGPFR 306 (432)
.. .|++.+.+.+-...++|||+|+-.||.= -.|.++|+.++-. ++ +|+.=|+.+.-.+..-.|-
T Consensus 687 ~~---~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hnt~G~a~An~laA~~aGa-- 761 (1150)
T 3hbl_A 687 NI---YTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIHLHTHDTSGNGLLTYKQAIDAGV-- 761 (1150)
T ss_dssp SS---SSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHCCSCEEEEECBTTSCHHHHHHHHHHTTC--
T ss_pred CC---CCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCcHHHHHHHHHHHhCC--
Confidence 22 3566777777777899999999999874 2566777765210 11 4555567766565555553
Q ss_pred hhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch------hHHHHHHHhh---CCCC----
Q 014017 307 EALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY------LDVIRLLRDK---YPLP---- 372 (432)
Q Consensus 307 dAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y------LDII~~vk~~---~~lP---- 372 (432)
+.++++-. +| ..++|-+ -|.+..+.... |-| +++-. -+.+.+++.. |.-+
T Consensus 762 ~~vD~ai~GlG-~~~gn~~--------lE~lv~~L~~~--g~~-----tgidl~~l~~~~~~~~~~~~~y~~~~~~~~~~ 825 (1150)
T 3hbl_A 762 DIIDTAVASMS-GLTSQPS--------ANSLYYALNGF--PRH-----LRTDIEGMESLSHYWSTVRTYYSDFESDIKSP 825 (1150)
T ss_dssp SEEEEBCGGGC-SBTSCCB--------HHHHHHHTTTS--SCC-----BCSCHHHHHHHHHHHHHHHGGGGGGCCSCCSC
T ss_pred CEEEEeccccC-CCCCCcc--------HHHHHHHHHhc--CCC-----cCccHHHHHHHHHHHHHHHhhhccccCCCCCC
Confidence 22444433 34 4577765 56666655442 333 33311 2223444443 2211
Q ss_pred ---eEEEEech-hhH-HHHHHHHCCCchhhHHHHHHHHHHHHcCccEe
Q 014017 373 ---IAAYQVSG-EYS-MIKAGGALKMIDEQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 373 ---vaaYqVSG-EYa-MikaAa~~G~id~~~~~~EsL~~ikRAGAd~I 415 (432)
|--||+-| -|+ |...+.++|+.|.=.-++|.+-..++-.-+++
T Consensus 826 ~~~v~~~~~PGg~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~g~~~ 873 (1150)
T 3hbl_A 826 NTEIYQHEMPGGQYSNLSQQAKSLGLGERFDEVKDMYRRVNFLFGDIV 873 (1150)
T ss_dssp CTTHHHHCCCSSHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTSCC
T ss_pred ccceEEeeCCCchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCc
Confidence 44567766 354 44558889999875555666555555444544
No 352
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=36.75 E-value=84 Score=29.00 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCchh
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMIDE 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id~ 396 (432)
..|..||+..+.. +..|+|++= |++.=+++++.+|+. ..+||....-.++......|.+.|..|.
T Consensus 49 ~~~~~~al~~~~~---~~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~ 119 (358)
T 3bre_A 49 CSDPQQAVAVANQ---IKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDY 119 (358)
T ss_dssp ECCHHHHHHHHHH---HCCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEE
T ss_pred eCCHHHHHHHHHh---CCCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcEEEEeCCCCHHHHHHHHhcChheE
Confidence 5788999877643 468999885 777778999999974 2599999888888888888889987643
No 353
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=36.57 E-value=63 Score=34.54 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred HHHhchhcCCcEEEEcCCCch----hHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCc
Q 014017 338 EAQADESEGADILLVKPGLPY----LDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGA 412 (432)
Q Consensus 338 e~~~Di~EGAD~lMVKPal~Y----LDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGA 412 (432)
.+..=++.|+|+|.|==+.-| +|.|+.+|+.+ ++||.|=+|- + .|.-..+.+|||
T Consensus 285 R~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVa---------------T-----~e~a~~Li~aGA 344 (556)
T 4af0_A 285 RLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVV---------------T-----REQAAQLIAAGA 344 (556)
T ss_dssp HHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEEC---------------S-----HHHHHHHHHHTC
T ss_pred HHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEecccc---------------C-----HHHHHHHHHcCC
Confidence 333336789999999877655 99999999998 5999998882 2 233445677899
Q ss_pred cEee
Q 014017 413 DIIL 416 (432)
Q Consensus 413 d~Ii 416 (432)
|.|.
T Consensus 345 D~vk 348 (556)
T 4af0_A 345 DGLR 348 (556)
T ss_dssp SEEE
T ss_pred CEEe
Confidence 9984
No 354
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=36.31 E-value=35 Score=31.74 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCCCeEEEeeecc
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVAL 221 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~-g~v~raIr~iK~~fPdl~IitDVcL 221 (432)
.+.++++.+.+.|+..+-+= +. + | -|-|| .+=...++.||+.+|++.+-+|.-.
T Consensus 19 ~l~~~i~~~~~~g~d~iHvD-vm-D------g--~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv 73 (227)
T 1tqx_A 19 KLAEETQRMESLGAEWIHLD-VM-D------M--HFVPNLSFGPPVINNLKKYTKSIFFDVHLMV 73 (227)
T ss_dssp GHHHHHHHHHHTTCSEEEEE-EE-B------S--SSSSCBCCCHHHHHHHGGGCSSCEEEEEEES
T ss_pred hHHHHHHHHHHcCCCEEEEE-EE-e------C--CcCcchhcCHHHHHHHHHhCCCCcEEEEEEE
Confidence 48899999999999875441 11 1 0 11111 1114789999999999887777654
No 355
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=36.25 E-value=33 Score=33.11 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=43.9
Q ss_pred eechhhhHHHHHHH-HHHcCCCeEEEeecCCCCCCCcccCc---CcCCCCC-----------HHHHHHHHHHHCCCeEEE
Q 014017 152 RLGWRHGLVQEVAK-ARDVGVNSVVLFPKVPDALKSPTGDE---AYNDNGL-----------VPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 152 r~si~~~l~~~v~~-~~~~GI~sv~LFgvi~~~~Kd~~gs~---A~n~~g~-----------v~raIr~iK~~fPdl~Ii 216 (432)
-|.++ ++.++++. +.++|+++|-|-|+......+..|.. .|++-+. +.+.|+.++++ .|-||
T Consensus 18 ~W~w~-~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~--Gi~Vi 94 (496)
T 4gqr_A 18 EWRWV-DIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNV--GVRIY 94 (496)
T ss_dssp TCCHH-HHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHT--TCEEE
T ss_pred CCCHH-HHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHC--CCEEE
Confidence 34565 58888877 99999999999875221111112222 3333221 35666666666 69999
Q ss_pred eeecccCC
Q 014017 217 TDVALDPY 224 (432)
Q Consensus 217 tDVcLc~Y 224 (432)
.|+-+-+.
T Consensus 95 lD~V~NH~ 102 (496)
T 4gqr_A 95 VDAVINHM 102 (496)
T ss_dssp EEECCSEE
T ss_pred EEEccCcC
Confidence 99987653
No 356
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=36.10 E-value=50 Score=28.15 Aligned_cols=77 Identities=8% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh------hH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE------QR 398 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~------~~ 398 (432)
..|..||+... +..|+|++= |.+.-+++++.+++.. .+|+....-..+...+..+.+.|..+. .+
T Consensus 31 ~~~~~~al~~~-----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 105 (220)
T 1p2f_A 31 FLTGEDFLNDE-----EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPE 105 (220)
T ss_dssp ESSHHHHHHCC-----SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred ECCHHHHHHhc-----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 45777777543 668999875 6667789999999874 699999988888888888888887542 24
Q ss_pred HHHHHHHHHHHc
Q 014017 399 VMMESLMCLRRA 410 (432)
Q Consensus 399 ~~~EsL~~ikRA 410 (432)
.+.+.+..+.+-
T Consensus 106 ~L~~~i~~~~~~ 117 (220)
T 1p2f_A 106 ILLARVKRFLER 117 (220)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 455666555543
No 357
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=36.06 E-value=1.3e+02 Score=29.48 Aligned_cols=130 Identities=19% Similarity=0.156 Sum_probs=74.9
Q ss_pred cccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc
Q 014017 239 IMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (432)
Q Consensus 239 IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR 318 (432)
.+..+.++.||+.|..+ |+..|+-. -+.|...++.|...+..=+.+..| |+ |.
T Consensus 70 ~~T~~dI~~lc~eA~~~---g~aaVCV~---P~~V~~a~~~L~~s~V~V~tVigF----------P~----------G~- 122 (288)
T 3oa3_A 70 SATGSQIDVLCAEAKEY---GFATVCVR---PDYVSRAVQYLQGTQVGVTCVIGF----------HE----------GT- 122 (288)
T ss_dssp TCCHHHHHHHHHHHHHH---TCSEEEEC---GGGHHHHHHHTTTSSCEEEEEEST----------TT----------SC-
T ss_pred CCCHHHHHHHHHHHHhc---CCcEEEEC---HHHHHHHHHHcCCCCCeEEEEeCC----------CC----------CC-
Confidence 35677888899998865 66655433 358899999984443221222222 11 21
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEEE-EcCCCc-----h---hHHHHHHHhhCCCCeEEEEechhhHHHHHHH
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADILL-VKPGLP-----Y---LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGG 389 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lM-VKPal~-----Y---LDII~~vk~~~~lPvaaYqVSGEYaMikaAa 389 (432)
.+ ..--+.|++.=++.|||-|= |=+-.. | ++=|+.+++..+-|+. |-=.
T Consensus 123 ----~~-------~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~l-----------KVIl 180 (288)
T 3oa3_A 123 ----YS-------TDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAIL-----------KVIL 180 (288)
T ss_dssp ----SC-------HHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEE-----------EEEC
T ss_pred ----Cc-------HHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCc-----------eEEE
Confidence 11 13336677777889998774 433211 2 3445566666654421 1112
Q ss_pred HCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 390 ALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 390 ~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
+.|.++.+++. ..-.....||||+|=|.
T Consensus 181 Et~~Lt~eei~-~A~~ia~eaGADfVKTS 208 (288)
T 3oa3_A 181 ETSQLTADEII-AGCVLSSLAGADYVKTS 208 (288)
T ss_dssp CGGGCCHHHHH-HHHHHHHHTTCSEEECC
T ss_pred ECCCCCHHHHH-HHHHHHHHcCCCEEEcC
Confidence 44556666544 35555668999999887
No 358
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=35.92 E-value=48 Score=31.93 Aligned_cols=90 Identities=12% Similarity=0.183 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCC---CCHHHHHHHHHHHCCCeEEEeeecc---cCCCCCCcceee
Q 014017 161 QEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDN---GLVPRTIWLLKDRYPDLVIYTDVAL---DPYSSDGHDGIV 233 (432)
Q Consensus 161 ~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~---g~v~raIr~iK~~fPdl~IitDVcL---c~YTshGHcGIl 233 (432)
+.++.+++.|++.|-+|...++. .+-..+. ..+ ..+.++++.+|+.. +.|...+|. |||
T Consensus 85 ~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~---s~~e~l~~~~~~v~~ak~~G--~~v~~~i~~~~~~~~--------- 150 (307)
T 1ydo_A 85 RGLENALEGGINEACVFMSASETHNRKNINK---STSESLHILKQVNNDAQKAN--LTTRAYLSTVFGCPY--------- 150 (307)
T ss_dssp HHHHHHHHHTCSEEEEEEESSHHHHHTTTCS---CHHHHHHHHHHHHHHHHHTT--CEEEEEEECTTCBTT---------
T ss_pred HhHHHHHhCCcCEEEEEeecCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEecCCc---------
Confidence 45778888999999999864321 0001110 111 12345677777764 334444443 454
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 270 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD 270 (432)
+|..+ .+.+.+.+-...++|||.|.-.|+.=
T Consensus 151 --~~~~~----~~~~~~~~~~~~~~Ga~~i~l~DT~G 181 (307)
T 1ydo_A 151 --EKDVP----IEQVIRLSEALFEFGISELSLGDTIG 181 (307)
T ss_dssp --TBCCC----HHHHHHHHHHHHHHTCSCEEEECSSC
T ss_pred --CCCCC----HHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 13332 33455555556688999999988754
No 359
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.60 E-value=1.4e+02 Score=27.57 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=70.7
Q ss_pred HHHHHHHHHHH------HHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCc--c-------------ceeecc-hhh--h
Q 014017 242 DETVHQLCKQA------VSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ--H-------------VSIMSY-TAK--Y 297 (432)
Q Consensus 242 D~Tl~~Lak~A------vs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~--~-------------v~ImSY-SaK--y 297 (432)
-.|++-+|+.| ||.+-.|-.- .-+-.-..|+++.++.||. + ++++-- ... |
T Consensus 9 ~~Ti~diA~~aGVS~~TVSrvLn~~~~-----Vs~~tr~rV~~~a~~lgY~~pn~~a~~l~~~~s~~Igvi~~~~~~~~~ 83 (366)
T 3h5t_A 9 YGTLASIAAKLGISRTTVSNAYNRPEQ-----LSAELRQRILDTAEDMGYLGPDPVARSLRTRRAGAIGVLLTEDLTYAF 83 (366)
T ss_dssp TTHHHHHHHHHTSCHHHHHHHHHCGGG-----SCHHHHHHHHHHHHHTTC--------------CCEEEEEESSCTTHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHCCCCC-----CCHHHHHHHHHHHHHhCCCCCCHHHHHhhcCCCCEEEEEecCCccccc
Confidence 35788888755 8888877433 3345667888899999985 1 333321 111 4
Q ss_pred ccccchhhhhhhhCCCCCCCcccccccccCCCCCH---HHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeE
Q 014017 298 ASSFYGPFREALDSNPRFGDKKTYVIRVIELYANY---REALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 298 ASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~---~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPva 374 (432)
.+.||..+.+.+...-. .|++.++....+. .+.+.+.. ++.+.|-|++=|...--+.+..+++ .++|+.
T Consensus 84 ~~~~~~~~~~gi~~~a~-----g~~~~~~~~~~~~~~~~~~~~~~l--~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV 155 (366)
T 3h5t_A 84 EDMASVDFLAGVAQAAG-----DTQLTLIPASPASSVDHVSAQQLV--NNAAVDGVVIYSVAKGDPHIDAIRA-RGLPAV 155 (366)
T ss_dssp HSHHHHHHHHHHHHHSS-----SCEEEEEECCCCTTCCHHHHHHHH--HTCCCSCEEEESCCTTCHHHHHHHH-HTCCEE
T ss_pred cCHHHHHHHHHHHHHHh-----hCCEEEEEcCCCccHHHHHHHHHH--HhCCCCEEEEecCCCChHHHHHHHH-CCCCEE
Confidence 56677777776665533 5665433222222 22222222 4578999988876444456666654 367776
Q ss_pred EE
Q 014017 375 AY 376 (432)
Q Consensus 375 aY 376 (432)
.+
T Consensus 156 ~i 157 (366)
T 3h5t_A 156 IA 157 (366)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 360
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=35.46 E-value=2.8e+02 Score=26.97 Aligned_cols=85 Identities=14% Similarity=-0.003 Sum_probs=50.3
Q ss_pred HHHHHHHHhchhcCCcEEEEc-CCCc-hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchh---h--H--HHHHH
Q 014017 333 REALVEAQADESEGADILLVK-PGLP-YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDE---Q--R--VMMES 403 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMVK-Pal~-YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~---~--~--~~~Es 403 (432)
.||++-+.. +++ .++.++. |-.+ .++-.+++++++++||++=.---....++.+.++|.+|- | + -+.|+
T Consensus 223 ~~ai~~~~~-l~~-~~i~~iE~P~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGite~ 300 (403)
T 2ox4_A 223 VSAIQFAKA-IEE-FNIFFYEEINTPLNPRLLKEAKKKIDIPLASGERIYSRWGFLPFLEDRSIDVIQPDLGTCGGFTEF 300 (403)
T ss_dssp HHHHHHHHH-HGG-GCEEEEECCSCTTSTHHHHHHHHTCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCHHHHTHHHHH
T ss_pred HHHHHHHHH-HHh-hCCCEEeCCCChhhHHHHHHHHHhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHHHH
Confidence 566555443 333 3444443 3222 578899999999999998433223456677777777664 2 2 35565
Q ss_pred HHHH---HHcCccEeehhc
Q 014017 404 LMCL---RRAGADIILTYF 419 (432)
Q Consensus 404 L~~i---kRAGAd~IiTYf 419 (432)
+... +.+|-.+++...
T Consensus 301 ~~i~~~A~~~g~~~~~h~~ 319 (403)
T 2ox4_A 301 KKIADMAHIFEVTVQAHVA 319 (403)
T ss_dssp HHHHHHHHHTTCEECCCCC
T ss_pred HHHHHHHHHcCCEEeecCC
Confidence 5554 445776666543
No 361
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=35.39 E-value=18 Score=33.27 Aligned_cols=59 Identities=24% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHhchhcCCcEE---EEcC---CCch----hHHHHHHHhhC-----CCCeEEEEechhhHHHHHHHHCCCchhhHHHHH
Q 014017 338 EAQADESEGADIL---LVKP---GLPY----LDVIRLLRDKY-----PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 402 (432)
Q Consensus 338 e~~~Di~EGAD~l---MVKP---al~Y----LDII~~vk~~~-----~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~E 402 (432)
|....+.+|+|+| -|-| +..+ ++-|+++|+.. ++||.+ -|-|+. |
T Consensus 126 e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v---------------~GGI~~-----~ 185 (230)
T 1tqj_A 126 DFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEV---------------DGGLKP-----N 185 (230)
T ss_dssp GGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEE---------------ESSCCT-----T
T ss_pred HHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEE---------------ECCcCH-----H
Q ss_pred HHHHHHHcCccEee
Q 014017 403 SLMCLRRAGADIIL 416 (432)
Q Consensus 403 sL~~ikRAGAd~Ii 416 (432)
.+..++.||||.++
T Consensus 186 ~~~~~~~aGad~vv 199 (230)
T 1tqj_A 186 NTWQVLEAGANAIV 199 (230)
T ss_dssp TTHHHHHHTCCEEE
T ss_pred HHHHHHHcCCCEEE
No 362
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=35.27 E-value=46 Score=31.63 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCC-----C
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-----L 371 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~-----l 371 (432)
++.+...+++.+....| +.+.-.+- ..+.+|+..... .|||+||+-+ .-++-++++++..+ +
T Consensus 164 ~~g~~~~ai~~~r~~~~---~~~~i~ve----v~tlee~~~A~~----aGaD~I~ld~--~~~~~l~~~v~~l~~~~~~~ 230 (273)
T 2b7n_A 164 HVKDLKSFLTHARKNLP---FTAKIEIE----CESFEEAKNAMN----AGADIVMCDN--LSVLETKEIAAYRDAHYPFV 230 (273)
T ss_dssp TCSSHHHHHHHHGGGSC---TTCCEEEE----ESSHHHHHHHHH----HTCSEEEEET--CCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCHHHHHHHHHHhCC---CCceEEEE----cCCHHHHHHHHH----cCCCEEEECC--CCHHHHHHHHHHhhccCCCc
Q ss_pred CeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 372 PIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 372 PvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
|+.| .|-|+ .|.+..+..+|||.|-+
T Consensus 231 ~i~A---------------sGGI~-----~~ni~~~~~aGaD~i~v 256 (273)
T 2b7n_A 231 LLEA---------------SGNIS-----LESINAYAKSGVDAISV 256 (273)
T ss_dssp EEEE---------------ESSCC-----TTTHHHHHTTTCSEEEC
T ss_pred EEEE---------------ECCCC-----HHHHHHHHHcCCcEEEE
No 363
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=35.20 E-value=42 Score=30.10 Aligned_cols=61 Identities=16% Similarity=0.078 Sum_probs=41.9
Q ss_pred cCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehhcHHHHH
Q 014017 345 EGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTYFALQAA 424 (432)
Q Consensus 345 EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTYfA~~~a 424 (432)
-|+|.+-+.-...--+.++.+++ .+++|.+|.| |.+ |.+..+.+.|+|.|+|-+-..+.
T Consensus 162 ~~~~~i~~~~~~~~~~~v~~~~~-~G~~v~~wtv----------------n~~----~~~~~l~~~GvdgI~TD~p~~~~ 220 (224)
T 1vd6_A 162 LGVEAVHPHHALVTEEAVAGWRK-RGLFVVAWTV----------------NEE----GEARRLLALGLDGLIGDRPEVLL 220 (224)
T ss_dssp SCCSEEEEBGGGCCHHHHHHHHH-TTCEEEEECC----------------CCH----HHHHHHHHTTCSEEEESCHHHHT
T ss_pred cCCcEEecCcccCCHHHHHHHHH-CCCEEEEEeC----------------CCH----HHHHHHHhcCCCEEEcCCHHHHH
Confidence 47887765433333567777775 6899999998 222 34455678899999998876654
Q ss_pred HH
Q 014017 425 RC 426 (432)
Q Consensus 425 ~w 426 (432)
++
T Consensus 221 ~~ 222 (224)
T 1vd6_A 221 PL 222 (224)
T ss_dssp TS
T ss_pred Hh
Confidence 43
No 364
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=35.18 E-value=1e+02 Score=26.49 Aligned_cols=64 Identities=16% Similarity=0.092 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHhchh----------cCCcEEEEc---CCCchhHHHHHHHhh-----CCCCeEEEEech-hhHHHHHHH
Q 014017 329 YANYREALVEAQADES----------EGADILLVK---PGLPYLDVIRLLRDK-----YPLPIAAYQVSG-EYSMIKAGG 389 (432)
Q Consensus 329 p~N~~EAlre~~~Di~----------EGAD~lMVK---Pal~YLDII~~vk~~-----~~lPvaaYqVSG-EYaMikaAa 389 (432)
..|..||+........ .--|+|++= |.+.=+|+++.+|+. .++|+....-.. +-..+..+.
T Consensus 92 a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~ 171 (206)
T 3mm4_A 92 CDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI 171 (206)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH
Confidence 4577788776654321 257888875 666678999999985 568998876543 333333344
Q ss_pred HCC
Q 014017 390 ALK 392 (432)
Q Consensus 390 ~~G 392 (432)
+.|
T Consensus 172 ~~G 174 (206)
T 3mm4_A 172 QAG 174 (206)
T ss_dssp HHT
T ss_pred hCC
Confidence 444
No 365
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=35.17 E-value=1e+02 Score=28.26 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=59.9
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCc--------------cceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ--------------HVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~--------------~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
..||.+-.|-.-|+ +-.-..|+++.++.||. .++++.- ...+.||..+.+.+...-
T Consensus 15 ~TVSrvLn~~~~vs-----~~tr~rV~~~a~~lgY~pn~~ar~l~~~~~~~Igvi~~--~~~~~~~~~~~~gi~~~a--- 84 (340)
T 1qpz_A 15 TTVSHVINKTRFVA-----EETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLAT--SSEAAYFAEIIEAVEKNC--- 84 (340)
T ss_dssp HHHHHHHHTCSCCC-----HHHHHHHHHHHHHHTCCCCHHHHHHHHTCCSEEEEEES--CSCSHHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCcCCCC-----HHHHHHHHHHHHHhCCCCCHHHHhhccCCCCEEEEEeC--CCCChHHHHHHHHHHHHH---
Confidence 34666666543333 33556666666666662 2333321 134556666666554432
Q ss_pred CcccccccccCCCCCHHHHHHHHHhc-hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEE
Q 014017 317 DKKTYVIRVIELYANYREALVEAQAD-ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~D-i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYq 377 (432)
.+..|++-+..-..+..+ ..+.... ++.+.|-|++=|....-+++..+++..++|+..+.
T Consensus 85 ~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~~iPvV~~~ 145 (340)
T 1qpz_A 85 FQKGYTLILGNAWNNLEK-QRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMD 145 (340)
T ss_dssp HHTTCEEEEEECTTCHHH-HHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEE
T ss_pred HHcCCEEEEEeCCCCHHH-HHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHhhCCCCEEEEe
Confidence 234577642211122222 2222222 46799999998765433455556544578876653
No 366
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=35.04 E-value=1.4e+02 Score=27.45 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.1
Q ss_pred hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaa 375 (432)
.+-||..|-+ ..++-|+++|+.+++||.+
T Consensus 46 ~~~Ga~~i~~----~~~~~i~~ir~~v~~Pvig 74 (229)
T 3q58_A 46 ASAGAVAVRI----EGIENLRTVRPHLSVPIIG 74 (229)
T ss_dssp HHTTCSEEEE----ESHHHHHHHGGGCCSCEEE
T ss_pred HHCCCcEEEE----CCHHHHHHHHHhcCCCEEE
Confidence 4568999888 3578899999999999875
No 367
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=34.84 E-value=1.6e+02 Score=29.87 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=69.8
Q ss_pred hHHHHHHHHH-----HcCCCeEEE----eecCCCCCCCcccCcCcCCCCC---HHHHHHHHHHHCCCeEEEeeecccCCC
Q 014017 158 GLVQEVAKAR-----DVGVNSVVL----FPKVPDALKSPTGDEAYNDNGL---VPRTIWLLKDRYPDLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~-----~~GI~sv~L----Fgvi~~~~Kd~~gs~A~n~~g~---v~raIr~iK~~fPdl~IitDVcLc~YT 225 (432)
.+.+.++.++ ++|+.-|+| |+. .+|..|.--.|++-+ +..-++.|+++-=.+.|.+|.-- .|
T Consensus 37 ~i~~~ad~~~~~Gl~~~G~~~~~iDDgW~~~----~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~Giw~~~g~--~t 110 (404)
T 3hg3_A 37 LFMEMAELMVSEGWKDAGYEYLCIDDCWMAP----QRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGN--KT 110 (404)
T ss_dssp HHHHHHHHHHHTTHHHHTCCEEECCSSCBCS----SCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEEEEEEESSS--BC
T ss_pred HHHHHHHHHHHCCcHhhCCeEEEECCCcCCC----CCCCCCCeeeChhhcCCCHHHHHHHHHHCCCeeEEEecCCc--cc
Confidence 3555555554 778888877 431 366777755554332 34456777777767899988642 23
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-------CCCchHHHHHHHHHHCCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-------MMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-------MMDGrV~aIR~aLD~~Gf 285 (432)
-.||-|.+ |..+.| |-.+|+=|.|.|==-. .+.-|..++|+||.+.|=
T Consensus 111 C~~~pGs~---~~~~~d---------a~~fa~WGvDylK~D~C~~~~~~~~~~~y~~m~~AL~~tGR 165 (404)
T 3hg3_A 111 CAGFPGSF---GYYDID---------AQTFADWGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGR 165 (404)
T ss_dssp TTSSBCCT---TCHHHH---------HHHHHHHTCCEEEEECCSCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCccH---HHHHHH---------HHHHHHhCCcEEEecCcCCCcchhHHHHHHHHHHHHHhcCC
Confidence 34555544 333333 4579999999874221 145588999999999983
No 368
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.78 E-value=40 Score=25.75 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechh
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGE 381 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGE 381 (432)
..|..||+..... +..|+|++- |.+.-+++++.+|+. ..+|+....-+.+
T Consensus 33 ~~~~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 88 (127)
T 3i42_A 33 VMSGTDALHAMST---RGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAK 88 (127)
T ss_dssp ESSHHHHHHHHHH---SCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-C
T ss_pred ECCHHHHHHHHHh---cCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcc
Confidence 4577888877643 558999986 666779999999986 3689888765443
No 369
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=34.59 E-value=2.2e+02 Score=25.93 Aligned_cols=124 Identities=18% Similarity=0.127 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHH-HHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccc
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVG-AIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTY 321 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~-aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktY 321 (432)
.-.+.-.+.+-.+|++|..+|. +.--|-=+ +-|.+|+..| .-++|+ |+.+-. + .+. ++
T Consensus 42 ~~~~~A~~lg~~LA~~G~~vVs--Gg~~GiM~aa~~gAl~~GG-~~iGVl------------P~e~~~--~-~~~---~~ 100 (195)
T 1rcu_A 42 ELRDICLELGRTLAKKGYLVFN--GGRDGVMELVSQGVREAGG-TVVGIL------------PDEEAG--N-PYL---SV 100 (195)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEE--CCSSHHHHHHHHHHHHTTC-CEEEEE------------STTCCC--C-TTC---SE
T ss_pred HHHHHHHHHHHHHHHCCCEEEe--CCHHHHHHHHHHHHHHcCC-cEEEEe------------CCcccC--C-CCc---ce
Confidence 5556666777888999999998 55555444 4567776666 568887 331111 0 111 11
Q ss_pred cccccCCC-CCHHHHHHHHHhchhcCCcEEEEcCCCc-hhHHHHHHHhhCCCCeEEEEechhhH-HHHHHHHCC-Cchh
Q 014017 322 VIRVIELY-ANYREALVEAQADESEGADILLVKPGLP-YLDVIRLLRDKYPLPIAAYQVSGEYS-MIKAGGALK-MIDE 396 (432)
Q Consensus 322 Qmd~~~~p-~N~~EAlre~~~Di~EGAD~lMVKPal~-YLDII~~vk~~~~lPvaaYqVSGEYa-MikaAa~~G-~id~ 396 (432)
-+. . .|- ..|... +.+=||.++|=|+.. -||=+.++-+ .+.||++++++|-|. .++...+.| +++.
T Consensus 101 ~~~----~~~~f--~~Rk~~--m~~~sda~IvlpGG~GTL~E~~eal~-~~kPV~lln~~g~w~~~l~~~~~~G~fi~~ 170 (195)
T 1rcu_A 101 AVK----TGLDF--QMRSFV--LLRNADVVVSIGGEIGTAIEILGAYA-LGKPVILLRGTGGWTDRISQVLIDGKYLDN 170 (195)
T ss_dssp EEE----CCCCH--HHHHHH--HHTTCSEEEEESCCHHHHHHHHHHHH-TTCCEEEETTSCHHHHHGGGGCBTTTBSST
T ss_pred eee----cCCCH--HHHHHH--HHHhCCEEEEecCCCcHHHHHHHHHh-cCCCEEEECCCCccHHHHHHHHHcCCcCCH
Confidence 111 1 121 123333 566789999999973 2666665544 589999999999987 555555555 5544
No 370
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=34.50 E-value=28 Score=32.77 Aligned_cols=54 Identities=24% Similarity=0.450 Sum_probs=41.0
Q ss_pred cccCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEe
Q 014017 142 TPIGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYT 217 (432)
Q Consensus 142 ~~I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Iit 217 (432)
..+..|||+. -..|+..+.++|...|.+||- . ..| | ...|+.|+..||++-+++
T Consensus 126 ~gi~~ipGv~-------TptEi~~A~~~Gad~vK~FPa--~----~~g-------G--~~~lkal~~p~p~ip~~p 179 (232)
T 4e38_A 126 IGIDIVPGVN-------NPSTVEAALEMGLTTLKFFPA--E----ASG-------G--ISMVKSLVGPYGDIRLMP 179 (232)
T ss_dssp HTCEEECEEC-------SHHHHHHHHHTTCCEEEECST--T----TTT-------H--HHHHHHHHTTCTTCEEEE
T ss_pred cCCCEEcCCC-------CHHHHHHHHHcCCCEEEECcC--c----ccc-------C--HHHHHHHHHHhcCCCeee
Confidence 3678899983 267899999999999999984 1 001 2 378999999999977764
No 371
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=34.39 E-value=3.3e+02 Score=26.39 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=72.9
Q ss_pred chhhhHHHHHHHHHHc-CCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCC----
Q 014017 154 GWRHGLVQEVAKARDV-GVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSS---- 226 (432)
Q Consensus 154 si~~~l~~~v~~~~~~-GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTs---- 226 (432)
+.+ .+.++++++++. |.+.+-+ +|. + +. + --.+-++++++.+ |++.++.|.. +.||-
T Consensus 151 ~~~-~~~~~a~~~~~~~G~~~~K~Kvg~-~----~~------~---~d~~~v~avR~~~g~~~~l~vDan-~~~~~~~a~ 214 (372)
T 3tj4_A 151 TLE-DLLAGSARAVEEDGFTRLKIKVGH-D----DP------N---IDIARLTAVRERVDSAVRIAIDGN-GKWDLPTCQ 214 (372)
T ss_dssp CHH-HHHHHHHHHHHTTCCCEEEEECCC-S----SH------H---HHHHHHHHHHHHSCTTCEEEEECT-TCCCHHHHH
T ss_pred CHH-HHHHHHHHHHHccCCCEEEEcCCC-C----CH------H---HHHHHHHHHHHHcCCCCcEEeeCC-CCCCHHHHH
Confidence 454 688999999999 9999988 331 1 00 0 0145788888998 6899999964 34541
Q ss_pred -------CCcceeecCCCccccHHHHHHHHH----------------HHHHHHHc-CCCeecCCCCCCchHHHHHHHHHH
Q 014017 227 -------DGHDGIVREDGVIMNDETVHQLCK----------------QAVSQARA-GADVVSPSDMMDGRVGAIRAALDA 282 (432)
Q Consensus 227 -------hGHcGIl~~~g~IdND~Tl~~Lak----------------~Avs~A~A-GADiVAPSDMMDGrV~aIR~aLD~ 282 (432)
.-.--.+.+.=.-+|-+.+..|.+ .+....+. ++|+|-|-=+--|=+...++..+-
T Consensus 215 ~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~~ia~~ 294 (372)
T 3tj4_A 215 RFCAAAKDLDIYWFEEPLWYDDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGITEYIQVADL 294 (372)
T ss_dssp HHHHHTTTSCEEEEESCSCTTCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEECCCCchhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHH
Confidence 111112322111234455555544 23333444 589999987777777766665553
Q ss_pred CCCccceeecch
Q 014017 283 EGFQHVSIMSYT 294 (432)
Q Consensus 283 ~Gf~~v~ImSYS 294 (432)
+--.++.+|.++
T Consensus 295 A~~~gi~~~~h~ 306 (372)
T 3tj4_A 295 ALAHRLPVVPHA 306 (372)
T ss_dssp HHHTTCCBCCCC
T ss_pred HHHcCCEEEecC
Confidence 322345555543
No 372
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=34.19 E-value=93 Score=29.58 Aligned_cols=70 Identities=20% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHhchhcCCcEEEEcCCCc-------------------hhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCc
Q 014017 334 EALVEAQADESEGADILLVKPGLP-------------------YLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMVKPal~-------------------YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
+.+.++..-.++-+|.|-+-=+-| -++||+.+++..++||.. -++. ||-
T Consensus 71 ~~~~~aa~~a~~~~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~v-Kir~-----------G~~ 138 (318)
T 1vhn_A 71 NELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSV-KTRL-----------GWE 138 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEE-EEES-----------CSS
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEE-EecC-----------CCC
Confidence 444444444443377776653332 268899999998888754 3443 786
Q ss_pred hhhHHHHHHHHHHHHcCccEeeh
Q 014017 395 DEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~IiT 417 (432)
+++.. |....+..+|+|.|+-
T Consensus 139 ~~~~~--~~a~~l~~~G~d~i~v 159 (318)
T 1vhn_A 139 KNEVE--EIYRILVEEGVDEVFI 159 (318)
T ss_dssp SCCHH--HHHHHHHHTTCCEEEE
T ss_pred hHHHH--HHHHHHHHhCCCEEEE
Confidence 65433 8888899999998853
No 373
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=33.85 E-value=33 Score=32.63 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeec---ccCCCCCCccee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVA---LDPYSSDGHDGI 232 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g---~v~raIr~iK~~fPdl~IitDVc---Lc~YTshGHcGI 232 (432)
.+.++.+++.|++.|.+|...++. .+...+ ...+. .+.+.++..|+.. +.|-+.++ -|||.
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~---~s~ee~l~~~~~~v~~a~~~G--~~V~~~l~~~~~~e~~------- 153 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNIN---CSIKDSLERFVPVLEAARQHQ--VRVRGYISCVLGCPYD------- 153 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHS---SCHHHHHHHHHHHHHHHHHTT--CEEEEEEECTTCBTTT-------
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhC---CCHHHHHHHHHHHHHHHHHCC--CeEEEEEEEEeeCCcC-------
Confidence 367888999999999998653220 000000 01111 1345566666653 44444443 24441
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM 269 (432)
+..+ .+.+.+.+-...++|||.|+-.|+.
T Consensus 154 ----~~~~----~~~~~~~~~~~~~~G~d~i~l~DT~ 182 (302)
T 2ftp_A 154 ----GDVD----PRQVAWVARELQQMGCYEVSLGDTI 182 (302)
T ss_dssp ----BCCC----HHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ----CCCC----HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 2222 3345555555668899999998865
No 374
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=33.74 E-value=56 Score=32.35 Aligned_cols=61 Identities=18% Similarity=0.377 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.++++.+.-+.++||++|-|-|+.+. +.....|+.-+. +.+-|+.++++ .|-||-|+-+-.
T Consensus 32 ~Gi~~kLdYLk~LGvt~I~L~Pi~~~----~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~--Gi~VilD~V~NH 104 (549)
T 4aie_A 32 QGIISRLDYLEKLGIDAIWLSPVYQS----PGVDNGYDISDYEAIDPQYGTMADMDELISKAKEH--HIKIVMDLVVNH 104 (549)
T ss_dssp HHHHTTHHHHHHHTCSEEEECCCEEC----CCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSB
T ss_pred HHHHHhhHHHHHCCCCEEEeCCCcCC----CCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHC--CCEEEEEECccC
Confidence 36788888999999999999886432 122334443332 23445555554 699999998754
No 375
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=33.56 E-value=51 Score=31.58 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=62.1
Q ss_pred HHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC-C----------
Q 014017 202 TIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD-M---------- 268 (432)
Q Consensus 202 aIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD-M---------- 268 (432)
..|.|++..|+ ++-+.|.+-+|| |.=+-|+-.+.+.+.+-.+.++|||+|.=-. -
T Consensus 39 v~~~i~~~lP~e~~iy~~D~a~~PY------------G~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr 106 (274)
T 3uhf_A 39 VLKSLYEARLFDEIIYYGDTARVPY------------GVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALR 106 (274)
T ss_dssp HHHHHHHTTCCSEEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHH
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHH
Confidence 57888889994 888899999999 3334455566666666677788999874211 0
Q ss_pred ------CCchH-HHHHHHHHH--CCCccceeecchhhhccccch
Q 014017 269 ------MDGRV-GAIRAALDA--EGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 269 ------MDGrV-~aIR~aLD~--~Gf~~v~ImSYSaKyASsfYG 303 (432)
+=|-+ .+++.+... .+..+|+||+=.+--.|.+|-
T Consensus 107 ~~~~iPvigiiepa~~~a~~~~~t~~~~IGVLaT~~Ti~s~~Y~ 150 (274)
T 3uhf_A 107 AKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQ 150 (274)
T ss_dssp HHCSSCEECSHHHHHHHHHHHHCCTTSCEEEEECHHHHHHTHHH
T ss_pred HhcCCCEEcCCHHHHHHHHHhcccCCCeEEEEeccccccHHHHH
Confidence 11545 566666665 456789999877767776664
No 376
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=33.45 E-value=66 Score=29.55 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=48.6
Q ss_pred HHHHHCCCccceeecchhhhccccchhhhhhhhCCCC-CCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-CC
Q 014017 278 AALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPR-FGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-PG 355 (432)
Q Consensus 278 ~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-Pa 355 (432)
+.|.+.|++++.|+.-..-|......-|++++...-. .-....|..+ ..+....+.++. +.++|.|++= ..
T Consensus 134 ~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~----~~d~~~~~~~l~---~~~~d~v~~~~~~ 206 (364)
T 3lop_A 134 TALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN----TANVGPAVDKLL---AADVQAIFLGATA 206 (364)
T ss_dssp HHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT----SCCCHHHHHHHH---HSCCSEEEEESCH
T ss_pred HHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC----CccHHHHHHHHH---hCCCCEEEEecCc
Confidence 3444677778888754444555666677777765421 1112233333 334455555543 3688988871 11
Q ss_pred CchhHHHHHHHh-hCCCCeEEE
Q 014017 356 LPYLDVIRLLRD-KYPLPIAAY 376 (432)
Q Consensus 356 l~YLDII~~vk~-~~~lPvaaY 376 (432)
..-.-+++.+++ ..+.|+..+
T Consensus 207 ~~a~~~~~~~~~~g~~~~~i~~ 228 (364)
T 3lop_A 207 EPAAQFVRQYRARGGEAQLLGL 228 (364)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEC
T ss_pred HHHHHHHHHHHHcCCCCeEEEe
Confidence 122345556655 235676544
No 377
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=33.34 E-value=1e+02 Score=30.30 Aligned_cols=76 Identities=12% Similarity=0.118 Sum_probs=0.0
Q ss_pred cccccccccC-CCCCHHHHHHHHHhchhcCCcEEEE--cCCC------chhHHHHHHHhhC--CCCeEEEEechhhHHHH
Q 014017 318 KKTYVIRVIE-LYANYREALVEAQADESEGADILLV--KPGL------PYLDVIRLLRDKY--PLPIAAYQVSGEYSMIK 386 (432)
Q Consensus 318 RktYQmd~~~-~p~N~~EAlre~~~Di~EGAD~lMV--KPal------~YLDII~~vk~~~--~lPvaaYqVSGEYaMik 386 (432)
|+.+.++|+. ...+.++|.+.... |||.|.| -.+- ++++.|.++++.. ++||.+
T Consensus 221 ~~~~~~pv~vK~~~~~e~a~~a~~~----Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia----------- 285 (370)
T 1gox_A 221 QTITSLPILVKGVITAEDARLAVQH----GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFL----------- 285 (370)
T ss_dssp HHHCCSCEEEECCCSHHHHHHHHHT----TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEE-----------
T ss_pred HHHhCCCEEEEecCCHHHHHHHHHc----CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEE-----------
Q ss_pred HHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 387 AGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 387 aAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.|-|....-+.+.|. +|||.+.
T Consensus 286 ----~GGI~~~~D~~k~l~----~GAdaV~ 307 (370)
T 1gox_A 286 ----DGGVRRGTDVFKALA----LGAAGVF 307 (370)
T ss_dssp ----ESSCCSHHHHHHHHH----HTCSEEE
T ss_pred ----ECCCCCHHHHHHHHH----cCCCEEe
No 378
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=33.29 E-value=1.4e+02 Score=29.46 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=39.9
Q ss_pred cccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-------------hHHHHHHHhhCCCCeEEEEech
Q 014017 320 TYVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-------------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 320 tYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-------------LDII~~vk~~~~lPvaaYqVSG 380 (432)
.--|| .-|.++|--. ++-||..||+==+.|. ++.|+++++..++||.+=-=-|
T Consensus 13 ~vimd----v~~~eqa~ia----e~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~rig 78 (291)
T 3o07_A 13 GVIMD----VVTPEQAKIA----EKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIG 78 (291)
T ss_dssp CEEEE----ESSHHHHHHH----HHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETT
T ss_pred Ceeee----cCCHHHHHHH----HHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecC
Confidence 44578 7787776432 3459999999855554 9999999999999999865433
No 379
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=33.17 E-value=1.1e+02 Score=30.80 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHCCC---eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHH---cCCCeecCCCCCC-
Q 014017 198 LVPRTIWLLKDRYPD---LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQAR---AGADVVSPSDMMD- 270 (432)
Q Consensus 198 ~v~raIr~iK~~fPd---l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~---AGADiVAPSDMMD- 270 (432)
-...|++..++.||+ +.+- .|.|.+ -.+.|+..++ +|+|+|=.-.|-.
T Consensus 192 ~~~~A~~~~~~~~p~~~~~~vl----vDT~d~---------------------~~~~al~~~~~~~~~~d~IrlDs~~~~ 246 (395)
T 2i14_A 192 DQVKAWKYFDEVIEEEVPRIAL----VDTFYD---------------------EKVEAVMAAEALGKKLFAVRLDTPSSR 246 (395)
T ss_dssp CHHHHHHHHHHHSCSSSCCEEE----CCSSBC---------------------HHHHHHHHHTTTGGGCCEEEECCCTTT
T ss_pred CHHHHHHHHHHhCCCCccEEEE----eccchH---------------------HHHHHHHHHHHhccCCcEEEeCCCCCC
Confidence 356899999999996 2333 234411 1122333334 7899998766633
Q ss_pred -----chHHHHHHHHHHCCCccceee
Q 014017 271 -----GRVGAIRAALDAEGFQHVSIM 291 (432)
Q Consensus 271 -----GrV~aIR~aLD~~Gf~~v~Im 291 (432)
=-|..+|+.||+.||.++.|.
T Consensus 247 ~gd~~~~v~~~r~~ld~~G~~~~~I~ 272 (395)
T 2i14_A 247 RGNFRKIIEEVRWELKVRGYDWVKIF 272 (395)
T ss_dssp CSCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred cccHHHHHHHHHHHHHhCCCCceEEE
Confidence 346778899999998776553
No 380
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=33.16 E-value=91 Score=28.81 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.9
Q ss_pred hHHHHHHHhhCCCCeEE
Q 014017 359 LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 359 LDII~~vk~~~~lPvaa 375 (432)
++.++++++.+++||.+
T Consensus 230 ~~~i~~i~~~~~ipvia 246 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIG 246 (311)
T ss_dssp HHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHHhcCCCEEE
Confidence 68999999999999875
No 381
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=33.14 E-value=3.5e+02 Score=26.39 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=25.5
Q ss_pred hhcCCcEEEEcCCC------chhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVKPGL------PYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPal------~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+|+|-|=... .-++.++.+|+.+++||.+
T Consensus 261 ~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~ 299 (364)
T 1vyr_A 261 AKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIG 299 (364)
T ss_dssp HHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEE
T ss_pred HHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEE
Confidence 45799999885421 1378999999999999875
No 382
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=33.13 E-value=2.1e+02 Score=27.91 Aligned_cols=179 Identities=9% Similarity=0.090 Sum_probs=93.7
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEE-eecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcc
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVL-FPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHc 230 (432)
+++.+ +.++.++.+.+.|+..|=+ |++-|... -.+...+.+ -..++.|++ .|+..+. .|++...+
T Consensus 20 ~~~~~-~k~~ia~~L~~aGv~~IEvg~~~~p~~~--f~~~~~~~~----~e~l~~i~~-~~~~~~~---~L~r~~~~--- 85 (320)
T 3dxi_A 20 DFNSK-IVDAYILAMNELPIDYLEVGYRNKPSKE--YMGKFGYTP----VSVLKHLRN-ISTKKIA---IMLNEKNT--- 85 (320)
T ss_dssp CCCHH-HHHHHHHHHHTTTCCEEEEEECCSCCSS--CCCHHHHCC----HHHHHHHHH-HCCSEEE---EEEEGGGC---
T ss_pred cCCHH-HHHHHHHHHHHhCCCEEEEecccCCccc--cccccccCh----HHHHHHHhh-ccCCeEE---EEecCCCC---
Confidence 67775 6899999999999999877 55422211 112223322 346677776 5775432 23333221
Q ss_pred eeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHH---HHHHCCCccceeecchhhhccccchhhhh
Q 014017 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRA---ALDAEGFQHVSIMSYTAKYASSFYGPFRE 307 (432)
Q Consensus 231 GIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~---aLD~~Gf~~v~ImSYSaKyASsfYGPFRd 307 (432)
..+ .++.+- .| ..+|+|+|.-.+-.. .+....+ ...+.|+.-..-++| +.|+-+
T Consensus 86 -------~~~---dv~~~~-~a---~~~Gvd~~ri~~~~~-nle~~~~~v~~ak~~G~~v~~~~~~--------~~~~~~ 142 (320)
T 3dxi_A 86 -------TPE---DLNHLL-LP---IIGLVDMIRIAIDPQ-NIDRAIVLAKAIKTMGFEVGFNVMY--------MSKWAE 142 (320)
T ss_dssp -------CGG---GHHHHH-GG---GTTTCSEEEEEECGG-GHHHHHHHHHHHHTTTCEEEEEECC--------TTTGGG
T ss_pred -------Chh---hHHHHH-Hh---hhcCCCEEEEEecHH-HHHHHHHHHHHHHHCCCEEEEEEEe--------CCCCCC
Confidence 111 232221 11 238999987665332 1222222 345678742222444 233321
Q ss_pred hhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCC------chhHHHHHHHhhCCCCeEEEEechh
Q 014017 308 ALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGL------PYLDVIRLLRDKYPLPIAAYQVSGE 381 (432)
Q Consensus 308 Aa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal------~YLDII~~vk~~~~lPvaaYqVSGE 381 (432)
- .|.+. .+.. ++.|||.|-+|=-. .+-++|+.+|+.+++|+. +|---.
T Consensus 143 ----------~-~~~l~-------------~~~~-~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~i~-~H~Hn~ 196 (320)
T 3dxi_A 143 ----------M-NGFLS-------------KLKA-IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVPVG-FHGHDN 196 (320)
T ss_dssp ----------S-TTSGG-------------GGGG-GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCCSCEE-EECBCT
T ss_pred ----------H-HHHHH-------------HHHH-hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhCCCeEE-EEeCCC
Confidence 0 13333 1111 46799999887432 246899999999999874 564222
Q ss_pred ----hHHHHHHHHCCC
Q 014017 382 ----YSMIKAGGALKM 393 (432)
Q Consensus 382 ----YaMikaAa~~G~ 393 (432)
.+-.-+|.++|.
T Consensus 197 ~G~a~an~laA~~aGa 212 (320)
T 3dxi_A 197 LQLGLINSITAIDDGI 212 (320)
T ss_dssp TSCHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHhCC
Confidence 233344555553
No 383
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=33.09 E-value=1.1e+02 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=24.7
Q ss_pred hhcCCcEEEE------cC-CCchhHHHHHHHhhC-CCCeEE
Q 014017 343 ESEGADILLV------KP-GLPYLDVIRLLRDKY-PLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMV------KP-al~YLDII~~vk~~~-~lPvaa 375 (432)
++.|||+|.+ .| +..-.++|+.+|+.+ +.++..
T Consensus 98 ~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~ 138 (234)
T 1yxy_A 98 AALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA 138 (234)
T ss_dssp HTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred HHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE
Confidence 5789999987 34 235578999999987 566654
No 384
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=33.05 E-value=2.6e+02 Score=26.20 Aligned_cols=108 Identities=17% Similarity=0.102 Sum_probs=62.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcce
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDG 231 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcG 231 (432)
.+..+ .+.+.++.+++.|+..+++.|.. |+...=...=-.+.++...+.... ||
T Consensus 15 ~iD~~-~l~~lv~~li~~Gv~gl~v~Gtt--------GE~~~Ls~~Er~~v~~~~~~~~~g--vi--------------- 68 (286)
T 2r91_A 15 RLDPE-LFANHVKNITSKGVDVVFVAGTT--------GLGPALSLQEKMELTDAATSAARR--VI--------------- 68 (286)
T ss_dssp EECHH-HHHHHHHHHHHTTCCEEEETSTT--------TTGGGSCHHHHHHHHHHHHHHCSS--EE---------------
T ss_pred ccCHH-HHHHHHHHHHHCCCCEEEECccc--------cChhhCCHHHHHHHHHHHHHHhCC--EE---------------
Confidence 34443 58889999999999999999962 222221111224566666666555 22
Q ss_pred eecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC----CCCchHHHHHHHHHHCCCccceeecch
Q 014017 232 IVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD----MMDGRVGAIRAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 232 Il~~~g~IdND~Tl~~Lak~Avs~A~AGADiV---APSD----MMDGrV~aIR~aLD~~Gf~~v~ImSYS 294 (432)
-.-|...-.+|++ +++ ..+++|||.| .|.= --+|-+...++..+.. +++||=|-
T Consensus 69 --~Gvg~~~t~~ai~-la~---~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~---~lPiilYn 129 (286)
T 2r91_A 69 --VQVASLNADEAIA-LAK---YAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAV---SIPVFLYN 129 (286)
T ss_dssp --EECCCSSHHHHHH-HHH---HHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHC---SSCEEEEE
T ss_pred --EeeCCCCHHHHHH-HHH---HHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc---CCCEEEEe
Confidence 1113233455554 333 3467899965 3431 1256677777776654 46788774
No 385
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=33.01 E-value=1.7e+02 Score=27.34 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=36.0
Q ss_pred hhcCCcEEEEcCCC----chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 343 ESEGADILLVKPGL----PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 343 i~EGAD~lMVKPal----~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+.||+.|-|---- -.++-++.+++.+++||-. - -+.+|+.++ .| .+.+|||.|+
T Consensus 75 ~~~GA~~isvlt~~~~f~G~~~~l~~i~~~v~lPvl~---k-----------dfI~d~~qi-~~----a~~~GAD~Vl 133 (254)
T 1vc4_A 75 ARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLR---K-----------DFVVDPFML-EE----ARAFGASAAL 133 (254)
T ss_dssp HHTTCSEEEEECCCSSSCCCHHHHHHHHHHCCSCEEE---E-----------SCCCSHHHH-HH----HHHTTCSEEE
T ss_pred HHcCCCEEEEecchhhhccCHHHHHHHHHhcCCCEEE---C-----------CcCCCHHHH-HH----HHHcCCCEEE
Confidence 45789999993211 1567788888899999853 1 255665432 33 4566888876
No 386
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=33.00 E-value=2.2e+02 Score=26.08 Aligned_cols=122 Identities=10% Similarity=0.021 Sum_probs=72.6
Q ss_pred HHHHHHHHH------HHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCc-c-------------ceeecchhhhccccc
Q 014017 243 ETVHQLCKQ------AVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ-H-------------VSIMSYTAKYASSFY 302 (432)
Q Consensus 243 ~Tl~~Lak~------Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~-~-------------v~ImSYSaKyASsfY 302 (432)
.|++-+|+. .||.|-.|-.- +-+..-..|+++.++.||. + ++++-- ...+.||
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~~~~-----vs~~tr~rV~~~~~~lgY~pn~~a~~l~~~~~~~Ig~i~~--~~~~~~~ 83 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRNRGD-----VSDATRARVLAAAKELGYVPNKIAGALASNRVNLVAVIIP--SLSNMVF 83 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTTCSC-----CCHHHHHHHHHHHHHHTCCCCCCCSCSTTSCCSEEEEEES--CSSSSSH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCC-----CCHHHHHHHHHHHHHhCCCCCHHHHHhhcCCCCEEEEEeC--CCCcHHH
Confidence 467777774 48888887543 4445677888888888883 1 222221 2345677
Q ss_pred hhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhc-hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEE
Q 014017 303 GPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD-ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAY 376 (432)
Q Consensus 303 GPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~D-i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaY 376 (432)
..+.+.+...- .+..|++-+.....+... ..+.... ++.+.|-|++=|...--+.+..+++ .++|+..+
T Consensus 84 ~~~~~gi~~~a---~~~g~~~~~~~~~~~~~~-~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVL---EDTELQPVVGVTDYLPEK-EEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA-AGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHH---TSSSSEEEEEECTTCHHH-HHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHHHHHH---HHCCCEEEEEeCCCCHHH-HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh-CCCCEEEE
Confidence 77776665542 345777752221222222 2222222 4679999999876544456666654 57888876
No 387
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=32.85 E-value=55 Score=30.99 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCCC---CHHHHHHHHHHHCCCeEEEeeecc---cCCCCCCccee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDNG---LVPRTIWLLKDRYPDLVIYTDVAL---DPYSSDGHDGI 232 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~g---~v~raIr~iK~~fPdl~IitDVcL---c~YTshGHcGI 232 (432)
.+.++.+.+.|++.|-+|...++. .+...+. ..+. .+.++++.+|+.. +.|..+++. |||
T Consensus 83 ~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~---~~~e~l~~~~~~i~~a~~~G--~~v~~~l~~~~~~~~-------- 149 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVIFGAASELFTKKNINC---SIEESFQRFDAILKAAQSAN--ISVRGYVSCALGCPY-------- 149 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSC---CHHHHHHHHHHHHHHHHHTT--CEEEEEEETTTCBTT--------
T ss_pred HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHCC--CeEEEEEEEEeeCCc--------
Confidence 456888999999999999864321 0111110 1112 2345667777764 445555553 343
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCc--------hHHHHHHHH
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDG--------RVGAIRAAL 280 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDG--------rV~aIR~aL 280 (432)
.|.. +.+.+.+.+-...++|||.|.-.|+.-. .|.++|+.+
T Consensus 150 ---~~~~----~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~ 198 (298)
T 2cw6_A 150 ---EGKI----SPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEV 198 (298)
T ss_dssp ---TBSC----CHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHS
T ss_pred ---CCCC----CHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhC
Confidence 1332 2345555555567899999998887642 455566555
No 388
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=32.85 E-value=58 Score=32.24 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=51.7
Q ss_pred hhcCCcEEEEc-----CCC------chhHHHHHHHhhCCCCeEEE---EechhhHHHHHHHHCC-----Cch---hhHHH
Q 014017 343 ESEGADILLVK-----PGL------PYLDVIRLLRDKYPLPIAAY---QVSGEYSMIKAGGALK-----MID---EQRVM 400 (432)
Q Consensus 343 i~EGAD~lMVK-----Pal------~YLDII~~vk~~~~lPvaaY---qVSGEYaMikaAa~~G-----~id---~~~~~ 400 (432)
.++|||||=|. |+. -.+.+|+.+++.+++||..- +.|=.-..+++|.++| +|+ .++ .
T Consensus 91 ~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~~-~ 169 (323)
T 4djd_D 91 AEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQEN-Y 169 (323)
T ss_dssp HTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTTB-C
T ss_pred HHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCccc-H
Confidence 38999999996 442 36778888989999999876 4455567788888877 222 221 1
Q ss_pred HHHHHHHHHcCccEeeh
Q 014017 401 MESLMCLRRAGADIILT 417 (432)
Q Consensus 401 ~EsL~~ikRAGAd~IiT 417 (432)
-+.+...++.|+-+|+.
T Consensus 170 ~~m~~laa~~g~~vVlm 186 (323)
T 4djd_D 170 KSLTAACMVHKHNIIAR 186 (323)
T ss_dssp HHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 23444567889999985
No 389
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=32.80 E-value=1.4e+02 Score=22.67 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY 369 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~ 369 (432)
..|..||+.... +...|+|++- |.+.-+++++.+|+..
T Consensus 36 ~~~~~~a~~~l~---~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 36 AHNGFDAGIKLS---TFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp ESSHHHHHHHHH---HTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred eCCHHHHHHHHH---hcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 457788877664 3468999987 5556689999999865
No 390
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=32.59 E-value=4.3e+02 Score=27.14 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=89.6
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEE--Eee-ecccCC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVI--YTD-VALDPY 224 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~I--itD-VcLc~Y 224 (432)
+|..+++.+ +.++.++.+.++|+.++-.-+ |.. -|. .--..+++ -...++.|++..|+..+ ++. ..++-|
T Consensus 22 ~~~~~~~~~-dkl~Ia~~L~~~Gv~~IE~g~--~at-F~~-~~r~~~~d--~~e~l~~i~~~~~~~~l~~l~R~~N~~G~ 94 (464)
T 2nx9_A 22 LFATRLRID-DMLPIAQQLDQIGYWSLECWG--GAT-FDS-CIRFLGED--PWQRLRLLKQAMPNTPLQMLLRGQNLLGY 94 (464)
T ss_dssp HSTTCCCGG-GTGGGHHHHHTSCCSEEEEEE--TTH-HHH-HHHTTCCC--HHHHHHHHHHHCSSSCEEEEECGGGTTSS
T ss_pred CCCcCCCHH-HHHHHHHHHHHcCCCEEEeCc--Ccc-ccc-hhhccCCC--HHHHHHHHHHhCCCCeEEEEeccccccCc
Confidence 445566765 588889999999999998843 110 000 00001221 13578888888887433 333 134445
Q ss_pred CCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecC----CCCCCchHHHHHHHHHHCCCcc-ceeecchhhhcc
Q 014017 225 SSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSP----SDMMDGRVGAIRAALDAEGFQH-VSIMSYTAKYAS 299 (432)
Q Consensus 225 TshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAP----SDMMDGrV~aIR~aLD~~Gf~~-v~ImSYSaKyAS 299 (432)
+.. .+ .+ .+..++.. +++|+|+|.- ||. + .+...=+.+.+.|..- +.| +|.
T Consensus 95 ~~~-------~d-dv-~~~~v~~a-------~~~Gvd~i~if~~~sd~-~-ni~~~i~~ak~~G~~v~~~i-~~~----- 150 (464)
T 2nx9_A 95 RHY-------AD-DV-VDTFVERA-------VKNGMDVFRVFDAMNDV-R-NMQQALQAVKKMGAHAQGTL-CYT----- 150 (464)
T ss_dssp SCC-------CH-HH-HHHHHHHH-------HHTTCCEEEECCTTCCT-H-HHHHHHHHHHHTTCEEEEEE-ECC-----
T ss_pred ccc-------cc-hh-hHHHHHHH-------HhCCcCEEEEEEecCHH-H-HHHHHHHHHHHCCCEEEEEE-Eee-----
Confidence 310 10 11 23334332 3679998763 333 2 2222223334567521 122 332
Q ss_pred ccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEc-------CCCchhHHHHHHHhhCCCC
Q 014017 300 SFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVK-------PGLPYLDVIRLLRDKYPLP 372 (432)
Q Consensus 300 sfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVK-------Pal~YLDII~~vk~~~~lP 372 (432)
.++ . | + | +..+.-+..=++-|||.|-+| |. ..-++|+.+|+++++|
T Consensus 151 --~~~---------~------~--~----~---e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~-~v~~lv~~l~~~~~~~ 203 (464)
T 2nx9_A 151 --TSP---------V------H--N----L---QTWVDVAQQLAELGVDSIALKDMAGILTPY-AAEELVSTLKKQVDVE 203 (464)
T ss_dssp --CCT---------T------C--C----H---HHHHHHHHHHHHTTCSEEEEEETTSCCCHH-HHHHHHHHHHHHCCSC
T ss_pred --eCC---------C------C--C----H---HHHHHHHHHHHHCCCCEEEEcCCCCCcCHH-HHHHHHHHHHHhcCCe
Confidence 110 0 1 3 2 222222222245799999887 44 2368999999999999
Q ss_pred eEEEEe
Q 014017 373 IAAYQV 378 (432)
Q Consensus 373 vaaYqV 378 (432)
+. +|-
T Consensus 204 i~-~H~ 208 (464)
T 2nx9_A 204 LH-LHC 208 (464)
T ss_dssp EE-EEE
T ss_pred EE-EEE
Confidence 74 454
No 391
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=32.55 E-value=2.6e+02 Score=24.62 Aligned_cols=93 Identities=13% Similarity=0.228 Sum_probs=58.0
Q ss_pred HHHcCCCeecCC----------------CCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCc
Q 014017 255 QARAGADVVSPS----------------DMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDK 318 (432)
Q Consensus 255 ~A~AGADiVAPS----------------DMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDR 318 (432)
.+++|.|-|=.. ++-+..+..+|+.|+++|++=+++-.| +.
T Consensus 31 ~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~--------~~--------------- 87 (262)
T 3p6l_A 31 TQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVY--------VA--------------- 87 (262)
T ss_dssp HHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEE--------CC---------------
T ss_pred HHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEecc--------CC---------------
Confidence 467888877433 344567999999999999853333222 11
Q ss_pred ccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechh
Q 014017 319 KTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE 381 (432)
Q Consensus 319 ktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGE 381 (432)
.. ....+.+++.+. +=||+.|.+-|+.-.++-+.++-++.++.++--+..++
T Consensus 88 ----~~----~~~~~~~i~~A~---~lGa~~v~~~~~~~~~~~l~~~a~~~gv~l~~En~~~~ 139 (262)
T 3p6l_A 88 ----EK----SSDWEKMFKFAK---AMDLEFITCEPALSDWDLVEKLSKQYNIKISVHNHPQP 139 (262)
T ss_dssp ----SS----TTHHHHHHHHHH---HTTCSEEEECCCGGGHHHHHHHHHHHTCEEEEECCSSS
T ss_pred ----cc----HHHHHHHHHHHH---HcCCCEEEecCCHHHHHHHHHHHHHhCCEEEEEeCCCc
Confidence 01 222333333332 34899999988877777777666777887766666543
No 392
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=32.45 E-value=39 Score=30.98 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhh
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDK 368 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~ 368 (432)
+.|..|+++.++ .....+|+ +|+++.+ .++|+.+|+.
T Consensus 12 ~~~l~~~~~~~~-~~~~~v~~--~Kv~~d~~~~~G~~~v~~l~~~ 53 (239)
T 1dbt_A 12 FASAEETLAFLA-PFQQEPLF--VKVGMELFYQEGPSIVKQLKER 53 (239)
T ss_dssp CSSHHHHHHHTG-GGTTSCCE--EEECHHHHHHHTHHHHHHHHHT
T ss_pred CCCHHHHHHHHH-HhcccCcE--EEECHHHHHHhCHHHHHHHHHC
Confidence 778888877654 22233565 9999765 5788888876
No 393
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=32.40 E-value=1.1e+02 Score=29.67 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=26.4
Q ss_pred hhcCCcEEEEcCCC---------------chhHHHHHHHhhC-CCCeEE
Q 014017 343 ESEGADILLVKPGL---------------PYLDVIRLLRDKY-PLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPal---------------~YLDII~~vk~~~-~lPvaa 375 (432)
.+.|+|.|.|-... ..+|.|+++|+.+ ++||.+
T Consensus 154 ~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVia 202 (350)
T 3b0p_A 154 AEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVT 202 (350)
T ss_dssp HHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEE
T ss_pred HHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEE
Confidence 35799999997642 2478999999998 899875
No 394
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=32.22 E-value=2.3e+02 Score=24.95 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHHcCCCeec------CCCCCCchHHHHHHHHHHCCCcccee
Q 014017 255 QARAGADVVS------PSDMMDGRVGAIRAALDAEGFQHVSI 290 (432)
Q Consensus 255 ~A~AGADiVA------PSDMMDGrV~aIR~aLD~~Gf~~v~I 290 (432)
.+++|.|-|= |.++-+..+..+|+.|+++|+.=+++
T Consensus 39 ~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 80 (257)
T 3lmz_A 39 LERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAV 80 (257)
T ss_dssp HHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3677888763 44667788999999999999853333
No 395
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=32.18 E-value=73 Score=32.56 Aligned_cols=106 Identities=12% Similarity=0.181 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcc--c--CcCcCCCCCH---HHHHHHHHHHCC-CeEEEeeecccCCCCCCc
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPT--G--DEAYNDNGLV---PRTIWLLKDRYP-DLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~--g--s~A~n~~g~v---~raIr~iK~~fP-dl~IitDVcLc~YTshGH 229 (432)
++.+.++.+.+.|+..|++++.... .-|-. + ...+.-.-+- .+.|+.+++..+ ++-||.
T Consensus 284 ~i~~iA~~a~~aGaDgIiv~Ntt~~-r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg------------ 350 (415)
T 3i65_A 284 QKKEIADVLLETNIDGMIISNTTTQ-INDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIA------------ 350 (415)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCBSC-CCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEE------------
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCcc-cccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEE------------
Confidence 5888888999999999999886432 11110 0 0111100012 267777777764 455552
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCCc--hH----HHHHHHHHHCCCccce
Q 014017 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DMMDG--RV----GAIRAALDAEGFQHVS 289 (432)
Q Consensus 230 cGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS--DMMDG--rV----~aIR~aLD~~Gf~~v~ 289 (432)
.|-|.+-+ .|+..-++|||.|.=- -+.+| -+ ..+++.|++.||+++.
T Consensus 351 ------~GGI~s~e-------Da~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~L~~~l~~~G~~si~ 405 (415)
T 3i65_A 351 ------SGGIFSGL-------DALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQRGYYNLK 405 (415)
T ss_dssp ------CSSCCSHH-------HHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHHTTCSSST
T ss_pred ------ECCCCCHH-------HHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 35565543 3444556899987521 12232 23 3455667788986653
No 396
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=32.13 E-value=70 Score=23.30 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhh---CCCCeEEEEechh
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDK---YPLPIAAYQVSGE 381 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~---~~lPvaaYqVSGE 381 (432)
..|..+++..... +..|++++= |...-+++++.+++. ..+|+..+.-+++
T Consensus 31 ~~~~~~~~~~l~~---~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~ 86 (119)
T 2j48_A 31 LVDGSTALDQLDL---LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPP 86 (119)
T ss_dssp ESCHHHHHHHHHH---HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCC
T ss_pred ecCHHHHHHHHHh---cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCC
Confidence 4577787776643 468998875 566778999999987 4699998765443
No 397
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=32.03 E-value=99 Score=31.40 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
...+.++.+.+.|+..|.|-.. . |. + ......|+.||+.+|++.|+. |
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~---~-----G~----~-~~~~~~i~~i~~~~~~~pvi~-------------------~ 302 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSS---Q-----GN----S-VYQIAMVHYIKQKYPHLQVIG-------------------G 302 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCS---C-----CC----S-HHHHHHHHHHHHHCTTCEEEE-------------------E
T ss_pred hhHHHHHHHHHcCCCEEEeecc---C-----Cc----c-hhHHHHHHHHHHhCCCCceEe-------------------c
Confidence 4688999999999998877221 1 11 1 134578999999999988874 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
.+.+- +.|....++|||.|--
T Consensus 303 ~v~t~-------~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 303 NVVTA-------AQAKNLIDAGVDGLRV 323 (514)
T ss_dssp EECSH-------HHHHHHHHHTCSEEEE
T ss_pred ccchH-------HHHHHHHHcCCCEEEE
Confidence 11221 2366677899998843
No 398
>3fk4_A Rubisco-like protein; structural genomics, target 9463A, PSI-2, protein structure initiative; 2.00A {Bacillus cereus atcc 14579}
Probab=31.94 E-value=46 Score=34.13 Aligned_cols=146 Identities=25% Similarity=0.284 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCccccc
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYV 322 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQ 322 (432)
-|-+.+++++..++..|.|+|= |.+++.+-+-|.+--.+--+. ---+.|-+.+ |.+|-|-
T Consensus 153 ls~~~~a~~~ye~~~GGlDfiK----------------DDE~l~~q~f~p~~eRv~~v~-eai~rA~~eT---Ge~k~y~ 212 (414)
T 3fk4_A 153 RNIGYLKTQLRDQAIGGVDIVK----------------DDEILFENALTPLTKRIVSGK-EVLQSVYETY---GHKTLYA 212 (414)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEE----------------CCTTCCSCSSSCHHHHHHHHH-HHHHHHHHHH---CCCCEEE
T ss_pred CCHHHHHHHHHHHHhcCCCcCc----------------CCCCCCCCCCccHHHHHHHHH-HHHHHHHHhh---CCcceEE
Confidence 3567889999999999999973 344443333333322221100 0011112222 7888898
Q ss_pred ccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh--CCCCeEEEEechhhHHHHHHHHCCCchhhHHH
Q 014017 323 IRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 400 (432)
Q Consensus 323 md~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~ 400 (432)
+|+.. ...|.++.++.=.+.|++++||=+-..=++.++.+++. .++|+-+ |=-|-=++.. --..|+ +. +++
T Consensus 213 ~NiTa---~~~em~~ra~~a~e~G~~~~mvd~~~~G~~a~~~l~r~~~~~~~lh~-HrA~~ga~~r-~~~~Gi-~~-~vl 285 (414)
T 3fk4_A 213 VNLTG---RTFDLKENAKRAVQAGADILLFNVFAYGLDVLQSLAEDDEIPVPIMA-HPAVSGAYSA-SKLYGV-SS-PLL 285 (414)
T ss_dssp EECCS---CGGGHHHHHHHHHHHTCSEEEECHHHHCHHHHHHHHHCTTSCSCEEE-CCTTTHHHHS-CSSSSB-CH-HHH
T ss_pred eEcCC---CHHHHHHHHHHHHHcCCCEEEEcccccChHHHHHHHhcCCCCceEEe-ccCccccccc-CCCCCc-cH-HHH
Confidence 88443 34788888887788999999998844447899999876 4788864 3322211111 111232 22 232
Q ss_pred HHHHHHHHHcCccEeeh
Q 014017 401 MESLMCLRRAGADIILT 417 (432)
Q Consensus 401 ~EsL~~ikRAGAd~IiT 417 (432)
+= +.+|-+|+|.|++
T Consensus 286 l~--Kl~RlaG~D~ih~ 300 (414)
T 3fk4_A 286 LG--KLLRYAGADFSLF 300 (414)
T ss_dssp HT--HHHHHHTCSEEEE
T ss_pred HH--HHHHhhCCCcccc
Confidence 22 3567789999986
No 399
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=31.89 E-value=3.3e+02 Score=25.56 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHHHHHHHCCCeE--EEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHH
Q 014017 201 RTIWLLKDRYPDLV--IYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRA 278 (432)
Q Consensus 201 raIr~iK~~fPdl~--IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~ 278 (432)
.-++.|++..|+-. -++|..-.|| |. .+.+++...+...+. .
T Consensus 35 tv~~~i~~~lP~~~~iy~~D~~~~Py------------G~-~s~~~i~~~~~~i~~-----------------------~ 78 (285)
T 2jfn_A 35 SVYDEIRHLLPDLHYIYAFDNVAFPY------------GE-KSEAFIVERVVAIVT-----------------------A 78 (285)
T ss_dssp HHHHHHHHHSTTSEEEEEECTTTCCT------------TT-SCHHHHHHHHHHHHH-----------------------H
T ss_pred HHHHHHHHhCCCCCeEEeeccCCCCC------------cc-CCHHHHHHHHHHHHH-----------------------H
Confidence 35688888899744 4589988888 11 245666665555544 3
Q ss_pred HHHHCCCccceeecchhhhccc-cchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcE-EEEcCCC
Q 014017 279 ALDAEGFQHVSIMSYTAKYASS-FYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADI-LLVKPGL 356 (432)
Q Consensus 279 aLD~~Gf~~v~ImSYSaKyASs-fYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~-lMVKPal 356 (432)
.|++.|. + .+-.+...+|+ ++.-.|+. +.++|+-+-.-..+|++. ..+--+ |+-=|+.
T Consensus 79 ll~~~g~-d--~IviaCNTas~~~l~~lr~~------------~~iPVigi~~a~~~a~~~-----~~~~rIgVLaT~~T 138 (285)
T 2jfn_A 79 VQERYPL-A--LAVVACNTASTVSLPALREK------------FDFPVVGVVPAIKPAARL-----TANGIVGLLATRGT 138 (285)
T ss_dssp HHHHSCC-S--EEEECCHHHHHHHHHHHHHH------------CSSCEECCCCCHHHHHHH-----CSSSEEEEEECTTG
T ss_pred HHHhCCC-C--EEEEECccccHHHHHHHHHh------------CCCCEEehHHHHHHHHHh-----cCCCEEEEEEcHHH
Confidence 3444553 2 23345666664 44333333 334544333333444321 112122 2234443
Q ss_pred chhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCch---hhHHHHHHHHHHHH--cCccEee
Q 014017 357 PYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMID---EQRVMMESLMCLRR--AGADIIL 416 (432)
Q Consensus 357 ~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id---~~~~~~EsL~~ikR--AGAd~Ii 416 (432)
--.+..++.-+++..-+-.+.+...- .. ...+.|+.+ .++.+.|.+..+++ .|+|.||
T Consensus 139 ~~s~~y~~~l~~~g~~~~v~~~~~~~-lv-~~ie~~~~~~~~~~~~l~~~l~~l~~~~~~~D~IV 201 (285)
T 2jfn_A 139 VKRSYTHELIARFANECQIEMLGSAE-MV-ELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVV 201 (285)
T ss_dssp GGCHHHHHHHHHSCTTSEEEEEECHH-HH-HHHHHHHHTCCCCHHHHHHHTHHHHTCSSCCSEEE
T ss_pred HhhHHHHHHHHHhCCCCEEeCCCCHH-HH-HHHHhcccCCHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 21223333333344333344443321 11 222333333 24678888888876 5899988
No 400
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=31.85 E-value=48 Score=31.06 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEE---cCCCc---h----hHHHHHHHhhC-----CCCeEEEEechhhHHHHHHHHCCC
Q 014017 329 YANYREALVEAQADESEGADILLV---KPGLP---Y----LDVIRLLRDKY-----PLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMV---KPal~---Y----LDII~~vk~~~-----~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
|.+..|.+. .+.+++|+|+| -|+.. + +|-|+++|+.. ++||.+ -|-
T Consensus 135 p~Tp~~~l~----~~l~~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~v---------------dGG 195 (237)
T 3cu2_A 135 PETPISELE----PYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI---------------DGS 195 (237)
T ss_dssp TTSCGGGGT----TTTTTCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEE---------------ESS
T ss_pred CCChHHHHH----HHhhcCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEE---------------ECC
Confidence 444444443 34568999977 88532 2 78888888765 466543 566
Q ss_pred chhhHHHHHHHHHHHH--cCccEeeh
Q 014017 394 IDEQRVMMESLMCLRR--AGADIILT 417 (432)
Q Consensus 394 id~~~~~~EsL~~ikR--AGAd~IiT 417 (432)
++. |.+..++. ||||+++.
T Consensus 196 I~~-----~~~~~~~~~~aGad~~Vv 216 (237)
T 3cu2_A 196 MTL-----ELAKYFKQGTHQIDWLVS 216 (237)
T ss_dssp CCH-----HHHHHHHHSSSCCCCEEE
T ss_pred cCH-----HHHHHHHHhCCCCcEEEE
Confidence 764 45567889 99999873
No 401
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A {Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A* 3axh_A*
Probab=31.73 E-value=69 Score=33.21 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.++.+.+.-+.++||++|-|-|+.+. +..+..|+.-+. +.+-|+.++++ .|-||.|+-+-+-
T Consensus 40 ~gi~~~Ldyl~~LGv~~i~l~Pi~~~----~~~~~GY~~~dy~~id~~~Gt~~df~~lv~~~h~~--Gi~VilD~V~NH~ 113 (589)
T 3aj7_A 40 KGIASKLEYIKELGADAIWISPFYDS----PQDDMGYDIANYEKVWPTYGTNEDCFALIEKTHKL--GMKFITDLVINHC 113 (589)
T ss_dssp HHHHHTHHHHHHHTCSEEEECCCEEC----CCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccC----CCCCCCcCcccccccccccCCHHHHHHHHHHHHHC--CCEEEEEeccccc
Confidence 36888899999999999999775332 222345554443 24455555554 7999999987553
No 402
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=31.44 E-value=1.7e+02 Score=29.84 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC-eEEE
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD-LVIY 216 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd-l~Ii 216 (432)
...+.++.+++.|++.+.+... + | +..+ +...|+.||+.+|+ +.|+
T Consensus 242 ~~~e~~~~l~e~gv~~l~Vd~~---~-----g----~~~~-~~~~i~~lk~~~~~~~~Vi 288 (503)
T 1me8_A 242 DFRERVPALVEAGADVLCIDSS---D-----G----FSEW-QKITIGWIREKYGDKVKVG 288 (503)
T ss_dssp SHHHHHHHHHHHTCSEEEECCS---C-----C----CSHH-HHHHHHHHHHHHGGGSCEE
T ss_pred hHHHHHHHHHhhhccceEEecc---c-----C----cccc-hhhHHHHHHHhCCCCceEe
Confidence 4677788888999987555321 1 1 1122 56778999999887 6554
No 403
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.42 E-value=94 Score=28.34 Aligned_cols=115 Identities=12% Similarity=0.216 Sum_probs=63.8
Q ss_pred HHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCc--------------cceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 251 QAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQ--------------HVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 251 ~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~--------------~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
..||.+-.|-.- .-+..-..|+++.++.||. .++++.. ...+.||..+.+.+...-
T Consensus 17 ~TVSrvln~~~~-----vs~~tr~rV~~aa~~lgY~pn~~ar~l~~~~~~~Ig~i~~--~~~~~~~~~~~~gi~~~a--- 86 (332)
T 2hsg_A 17 ATVSRVVNGNPN-----VKPSTRKKVLETIERLGYRPNAVARGLASKKTTTVGVIIP--DISNIFYAELARGIEDIA--- 86 (332)
T ss_dssp HHHHHHHTTCTT-----SCHHHHHHHHHHHHHHTCCSCHHHHHHTTC-CCEEEEEEC----CCSHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCCC-----CCHHHHHHHHHHHHHHCCCcCHHHHHHHhCCCCEEEEEeC--CCCCcHHHHHHHHHHHHH---
Confidence 457777777432 3345666777777777772 1333332 144567777766665432
Q ss_pred CcccccccccCCCCCHHHHHHHHHhc-hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEE
Q 014017 317 DKKTYVIRVIELYANYREALVEAQAD-ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ 377 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~D-i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYq 377 (432)
.+..|++-+.. ..+..+...+.... ++.+.|-|++=|...--+.+..+++ .++|+..+.
T Consensus 87 ~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~-~~iPvV~~~ 146 (332)
T 2hsg_A 87 TMYKYNIILSN-SDQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELKK-SPVPVVLAA 146 (332)
T ss_dssp HHHTCEEEEEE-CCSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHTT-SSSCEEEES
T ss_pred HHcCCEEEEEe-CCCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHh-CCCCEEEEc
Confidence 34567765221 22332322333333 3579999998776433356666653 578877653
No 404
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=31.31 E-value=1.2e+02 Score=29.52 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCCeec
Q 014017 244 TVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVA 264 (432)
+.+...++|..+.++|||+|=
T Consensus 61 ~~~~a~~~a~~~v~~GAdiID 81 (297)
T 1tx2_A 61 EVDAAVRHAKEMRDEGAHIID 81 (297)
T ss_dssp HHHHHHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEE
Confidence 457788899999999999983
No 405
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=31.28 E-value=1e+02 Score=30.18 Aligned_cols=94 Identities=17% Similarity=0.272 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHcCCCeEEEee----------c-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC-CeEEEeeecccCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFP----------K-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP-DLVIYTDVALDPYS 225 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFg----------v-i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP-dl~IitDVcLc~YT 225 (432)
+..+-++.+.+.|...|-|-+ - ..+.-.|+.|..--|.--++.+.|+++|+.++ |.-|..-+..+.|.
T Consensus 144 ~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~ 223 (343)
T 3kru_A 144 AFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYM 223 (343)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSS
T ss_pred HHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhh
Confidence 345556667889999999953 2 11234677776555555677889999999996 77777777766553
Q ss_pred CCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC
Q 014017 226 SDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPS 266 (432)
Q Consensus 226 shGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS 266 (432)
. +| .+ ++...+.|-.+.++ +|.|--|
T Consensus 224 ~---------~g-~~----~~~~~~~a~~l~~~-vd~i~vs 249 (343)
T 3kru_A 224 E---------GG-IN----IDMMVEYINMIKDK-VDLIDVS 249 (343)
T ss_dssp T---------TS-CC----HHHHHHHHHHHTTT-CSEEEEE
T ss_pred c---------cC-cc----HHHHHHHHHHhhcc-ccEEecc
Confidence 2 12 22 33344455566777 9998875
No 406
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A
Probab=31.20 E-value=39 Score=32.83 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=51.9
Q ss_pred eEEEeeCCC-CcccCCC-CCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 014017 132 PLFIHEGEE-DTPIGAM-PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (432)
Q Consensus 132 PlFV~eg~~-~~~I~sM-PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~ 209 (432)
|++|+--.+ ...-+++ |.+ =++.+ ++.++..++.+.|-.-|=|... |+.|...++++ ...+.+..||++
T Consensus 9 ~viIt~A~tGa~~t~~~~P~l-PvTpe-Eia~~A~~~~~AGAaivHlH~R------d~~G~ps~d~~-~~~e~~~~IR~~ 79 (284)
T 3chv_A 9 PCIICVAITGSVPTKADNPAV-PITVS-EQVESTQEAFEAGAAIAHCHVR------NDDGTPSSDPD-RFARLTEGLHTH 79 (284)
T ss_dssp CBCEEEECCCSSCCTTTCTTC-CCSHH-HHHHHHHHHHHHTCCEEEECEE------CTTSCEECCHH-HHHHHHHHHHHH
T ss_pred CeEEEEecCCCcCCcccCCCC-CCCHH-HHHHHHHHHHHcCCcEEEeeec------CCCCCcCCCHH-HHHHHHHHHHHh
Confidence 666664332 2222222 333 24554 6999999999999988888654 44477777654 677899999999
Q ss_pred CCCeEEE
Q 014017 210 YPDLVIY 216 (432)
Q Consensus 210 fPdl~Ii 216 (432)
.||++|-
T Consensus 80 ~pd~ii~ 86 (284)
T 3chv_A 80 CPGMIVQ 86 (284)
T ss_dssp STTCEEE
T ss_pred CCCeEEE
Confidence 9998876
No 407
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=31.16 E-value=86 Score=29.43 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=73.5
Q ss_pred HHHHHHHHHHCCCccceeecchhhhccccchh-----hhhhhhCCCCCCCcccc-----cccccCCCCCHHHHHHHHHhc
Q 014017 273 VGAIRAALDAEGFQHVSIMSYTAKYASSFYGP-----FREALDSNPRFGDKKTY-----VIRVIELYANYREALVEAQAD 342 (432)
Q Consensus 273 V~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP-----FRdAa~Sap~~gDRktY-----Qmd~~~~p~N~~EAlre~~~D 342 (432)
..++++ |...|. -.+.|+...+|.+||+ +.+.+. +.. .++ .-+.-+|+.++...
T Consensus 80 ~~aa~~-L~~~g~---d~IviaCnta~~~~G~~~~~~~~~~l~--------~~~~~~~~~iP----v~~~~~A~~~al~~ 143 (273)
T 2xed_A 80 ERCVLE-IADAAP---EVILYACLVAVMVGGPGEHHRVESAVA--------EQLATGGSQAL----VRSSAGALVEGLRA 143 (273)
T ss_dssp HHHHHH-HHTTCC---SEEEECCHHHHHTTCTTHHHHHHHHHH--------HHHHHTTCCCE----EEEHHHHHHHHHHH
T ss_pred HHHHHH-HhhcCC---CEEEECCChHHHhcccchhHHHHHHHH--------HHhhccCCCCC----EecHHHHHHHHHHH
Confidence 445554 666775 4566778888888874 335552 222 355 34556777776644
Q ss_pred hhcCC-cEEEEcCCCchh-HHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 343 ESEGA-DILLVKPGLPYL-DVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 343 i~EGA-D~lMVKPal~YL-DII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
. |+ -+-++=|-..-+ +..++.-+...+.+....-.|.+..++.+ .+++ +.+.+....+...|||.||--
T Consensus 144 ~--g~~rvgvltp~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g----~~~~-~~l~~~~~~l~~~gadaIvLg 214 (273)
T 2xed_A 144 L--DAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVG----CIPG-EQVMAAARSLDLSEVDALVIS 214 (273)
T ss_dssp T--TCCEEEEEECSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHH----TCCH-HHHHHHHHHSCCTTCSEEEEE
T ss_pred c--CCCeEEEEcCChhhhHHHHHHHHHHCCCEEeccccCCCccchhhc----ccCH-HHHHHHHHHHhhCCCCEEEEc
Confidence 3 53 355553433332 23334334567777777667765555533 4554 456787778878899998754
No 408
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=31.10 E-value=3.6e+02 Score=27.50 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=59.5
Q ss_pred HHHcCCCeEEEeecCCCCCCCcccCcCcCCC--CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC-ccccH
Q 014017 166 ARDVGVNSVVLFPKVPDALKSPTGDEAYNDN--GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG-VIMND 242 (432)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~--g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g-~IdND 242 (432)
+.++|..-+.++.. |+.. +....-||. .-+..+++..|+.--|+.|..|---| .||+++++| .|+-|
T Consensus 214 l~~lG~~v~~~~~~-pDg~---Fp~~~p~P~~~~~l~~l~~~v~~~~aDlgia~DgDaD------R~~vvd~~G~~i~gd 283 (485)
T 3uw2_A 214 FKALGCELVELFTD-IDGN---FPNHHPDPAHPENLQDVIAKLKATDAEIGFAFDGDGD------RLGVVTKDGQIIYPD 283 (485)
T ss_dssp HHHTTCCEEEESCS-CCTT---CCSSCSCTTSGGGGHHHHHHHHHSSCCEEEEECTTSS------CEEEECTTSCBCCHH
T ss_pred HHHcCCeEEEecCc-cCCC---CCCCCcCCCCHHHHHHHHHHHHhhCCCEEEEECCCCC------eEEEEeCCCceECHH
Confidence 45789987777764 3321 112222332 23567788888888899999774332 589998766 56678
Q ss_pred HHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 243 ETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 243 ~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
..+..|++.-+.. .-|..||.|..
T Consensus 284 ~~~alla~~ll~~-~~~~~vv~~v~ 307 (485)
T 3uw2_A 284 RQLMLFAEEVLSR-NPGAQIIYDVK 307 (485)
T ss_dssp HHHHHHHHHHHHH-STTCEEEEETT
T ss_pred HHHHHHHHHHHHh-CCCCeEEEEeC
Confidence 8888888876664 34677887743
No 409
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=31.00 E-value=93 Score=32.43 Aligned_cols=105 Identities=21% Similarity=0.280 Sum_probs=66.2
Q ss_pred echhhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeee
Q 014017 153 LGWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 153 ~si~~~l~~~v-~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDV 219 (432)
-++. ++.+.+ ..+.++||++|-|-|+-... ..++..|++-+. +.+.|+.++++ .|-||-|+
T Consensus 152 g~~~-~i~~~ll~yl~~lGv~~i~l~Pi~~~~---~~~~~GY~~~~y~~~~~~~Gt~~~~~~lv~~~H~~--Gi~VilD~ 225 (617)
T 1m7x_A 152 LSYR-ELADQLVPYAKWMGFTHLELLPINEHP---FDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAA--GLNVILDW 225 (617)
T ss_dssp CCHH-HHHHHHHHHHHHTTCSEEEESCCEECS---CGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred cCHH-HHHHHHHHHHHHcCCCEEEecccccCC---CCCCCCcccccCCccCccCCCHHHHHHHHHHHHHC--CCEEEEEE
Confidence 3553 678886 89999999999998853211 123445655443 23445555554 79999999
Q ss_pred cccCCCCCCcc-----e--eec-C---CC----------ccccHHHHHHHHHHHHHHHHc-CCCee
Q 014017 220 ALDPYSSDGHD-----G--IVR-E---DG----------VIMNDETVHQLCKQAVSQARA-GADVV 263 (432)
Q Consensus 220 cLc~YTshGHc-----G--Il~-~---~g----------~IdND~Tl~~Lak~Avs~A~A-GADiV 263 (432)
-+-...+++|. | ... . +| ...|.+..+.|...+.-..+. |+|-+
T Consensus 226 V~NH~~~~~~~~~~~d~~~~y~~~~~~~g~~~~w~~~~ln~~~p~v~~~i~~~~~~W~~~~gvDGf 291 (617)
T 1m7x_A 226 VPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALYWIERFGIDAL 291 (617)
T ss_dssp CTTSCCCSTTSSTTGGGSCSSBCC-----------CCCBCTTSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred ecCcccCccchhhhcCCCccccccCcccCCcCCCCCceecCCCHHHHHHHHHHHHHHHHHhCcCEE
Confidence 98877554441 1 000 0 01 234667888888888888886 98754
No 410
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=30.90 E-value=44 Score=31.95 Aligned_cols=44 Identities=23% Similarity=0.258 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEE
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaa 375 (432)
..+.+||+.=+. .+.+... .++|+++.+ +++|+.+|+. +.+|++
T Consensus 13 ~~~~~~al~l~~-~l~~~v~-~~~KvG~~l~~~~G~~~v~~Lk~~-g~~Vfl 61 (259)
T 3tfx_A 13 LDNEEQLNKILS-KLGDPHD-VFVKVGMELFYNAGIDVIKKLTQQ-GYKIFL 61 (259)
T ss_dssp CSCHHHHHHHHH-TTCCGGG-CEEEECHHHHHHHCHHHHHHHHHT-TCEEEE
T ss_pred CCCHHHHHHHHH-HhCcccc-eEEEeCHHHHHhcCHHHHHHHHHC-CCcEEE
Confidence 678888766544 3433330 478999887 7899999986 666654
No 411
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=30.86 E-value=66 Score=30.40 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHhchhcCCcEEEEcCCCch--------hHHHHHHHhhCCCCeEEEEech
Q 014017 330 ANYREALVEAQADESEGADILLVKPGLPY--------LDVIRLLRDKYPLPIAAYQVSG 380 (432)
Q Consensus 330 ~N~~EAlre~~~Di~EGAD~lMVKPal~Y--------LDII~~vk~~~~lPvaaYqVSG 380 (432)
.|.+|++..+..=.+-|||.+||=|-..| .+=.+.+.+ ++||..|++-|
T Consensus 72 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~--~lPiilYn~P~ 128 (283)
T 2pcq_A 72 ETLPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE--KMPLFLYHVPQ 128 (283)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH--HSCEEEEECHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc--CCCEEEEeCcc
Confidence 36788888777666779999999654322 122234445 89999999733
No 412
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides}
Probab=30.84 E-value=3.9e+02 Score=26.10 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=24.6
Q ss_pred CCceeechhhhHHHHHHHHHHcCCCeEEEeecCC
Q 014017 148 PGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVP 181 (432)
Q Consensus 148 PGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~ 181 (432)
+|--+|.+. .+-+.++.+.+.|++-++.++-.|
T Consensus 76 ~g~~~y~~~-~~D~~~d~~~~~G~~p~~~l~~~P 108 (500)
T 4ekj_A 76 DGKIVYDWT-KIDQLYDALLAKGIKPFIELGFTP 108 (500)
T ss_dssp TTEEEECCH-HHHHHHHHHHHTTCEEEEEECCBC
T ss_pred CCCeecchH-HHHHHHHHHHHCCCEEEEEEeCCc
Confidence 455566664 477888889999999998887544
No 413
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization, isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Probab=30.79 E-value=73 Score=32.68 Aligned_cols=62 Identities=16% Similarity=0.436 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.++.+.+.-+.++||++|-|-|+.+. +..+..|+.-+. +.+-|+.++++ .|-||-|+-+-+-
T Consensus 45 ~gi~~~LdyL~~LGv~~I~l~Pi~~~----~~~~~GYd~~dy~~idp~~Gt~~df~~lv~~aH~~--Gi~VilD~V~NH~ 118 (570)
T 1m53_A 45 RGIIEKLDYLKSLGIDAIWINPHYDS----PNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKR--NMRLMIDVVINHT 118 (570)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEEC----CCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEecccc
Confidence 36888899999999999999876332 222345554443 23445555554 7999999987543
No 414
>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}
Probab=30.61 E-value=84 Score=34.10 Aligned_cols=104 Identities=19% Similarity=0.230 Sum_probs=67.9
Q ss_pred chhhhHHHHH-HHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeec
Q 014017 154 GWRHGLVQEV-AKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVA 220 (432)
Q Consensus 154 si~~~l~~~v-~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVc 220 (432)
++. ++.+++ ..+.++|+++|-|-|+-+. ...++..|++-+. +.+.|+.++++ .|-||.|+.
T Consensus 261 ~~~-~l~~~l~~yLk~lG~t~I~L~Pi~e~---~~~~~wGY~~~~y~a~~~~yGt~~dfk~lV~~~H~~--GI~VilD~V 334 (722)
T 3k1d_A 261 SYR-QLARELTDYIVDQGFTHVELLPVAEH---PFAGSWGYQVTSYYAPTSRFGTPDDFRALVDALHQA--GIGVIVDWV 334 (722)
T ss_dssp CHH-HHHHHHHHHHHHHTCSEEEESCCEEC---SCGGGTTCSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CHH-HHHHHHHHHHHHcCCCeEEECCcccC---CCCCCCCCCcccCcCccccCCCHHHHHHHHHHHHHc--CCEEEEEEE
Confidence 453 678887 8899999999999885221 1123445655544 24566666665 699999999
Q ss_pred ccCCCCCCcc-----e--eec-CC---------C----ccccHHHHHHHHHHHHHHHH-cCCCee
Q 014017 221 LDPYSSDGHD-----G--IVR-ED---------G----VIMNDETVHQLCKQAVSQAR-AGADVV 263 (432)
Q Consensus 221 Lc~YTshGHc-----G--Il~-~~---------g----~IdND~Tl~~Lak~Avs~A~-AGADiV 263 (432)
+-....++|. | ... .+ | ...|.+..+.|...++-..+ -|+|-+
T Consensus 335 ~NH~~~~~~~~~~fdg~~~y~~~d~~~~~~~~Wg~~~ln~~~p~Vr~~l~~~~~~Wl~~~gvDGf 399 (722)
T 3k1d_A 335 PAHFPKDAWALGRFDGTPLYEHSDPKRGEQLDWGTYVFDFGRPEVRNFLVANALYWLQEFHIDGL 399 (722)
T ss_dssp TTCCCCCTTTTTTTTSSCCSBCCCCCSSSTTCCCCCCBCTTSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred eeccCCccchhhcCCCCcccccCCcccCccCCCCCeeecCCCHHHHHHHHHHHHHHHHHhCCCEE
Confidence 8776655431 1 000 00 0 23577888889999998888 598765
No 415
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=30.58 E-value=87 Score=31.10 Aligned_cols=99 Identities=8% Similarity=-0.086 Sum_probs=57.8
Q ss_pred hHHHHHHHHH-HcCCCeEEEeecC---------C--CCC-CCcccC-cCcCCCCCHHHHHHHHHHHCCCeEEEeeecccC
Q 014017 158 GLVQEVAKAR-DVGVNSVVLFPKV---------P--DAL-KSPTGD-EAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 158 ~l~~~v~~~~-~~GI~sv~LFgvi---------~--~~~-Kd~~gs-~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
...+.++.+. +.|...|-|.+-= | +.- .|+.|- .--|.--++.+.++++|+.+++-.|..-+..+.
T Consensus 175 ~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~ 254 (379)
T 3aty_A 175 LFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLN 254 (379)
T ss_dssp HHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECccc
Confidence 4666777888 9999999996520 1 122 566664 322333355677899999886323554444332
Q ss_pred CCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 224 YSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 224 YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
+....|. | .+++...+.+-.+.++|+|.|.-|.
T Consensus 255 ~~~~~~~------~-----~~~~~~~~la~~l~~~Gvd~i~v~~ 287 (379)
T 3aty_A 255 GVHGMID------S-----NPEALTKHLCKKIEPLSLAYLHYLR 287 (379)
T ss_dssp CGGGCCC------S-----CHHHHHHHHHHHHGGGCCSEEEEEC
T ss_pred ccccCCC------C-----CCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 2111121 1 1344445555667889999997665
No 416
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase; 2.20A {Streptococcus mutans} PDB: 2zid_A*
Probab=30.40 E-value=69 Score=32.65 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC---------H---HHHHHHHHHHCCCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---------V---PRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~---------v---~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.++.+.+..+.++||++|-|-|+.+. +..+..|+.-+. . .+-|+.++++ .|-||-|+-+-.-
T Consensus 31 ~gi~~~Ldyl~~LGv~~I~l~Pi~~~----~~~~~GY~~~dy~~idp~~Gt~~df~~lv~~~h~~--Gi~VilD~V~NH~ 104 (543)
T 2zic_A 31 KGITSKLDYLQKLGVMAIWLSPVYDS----PMDDNGYDIANYEAIADIFGNMADMDNLLTQAKMR--GIKIIMDLVVNHT 104 (543)
T ss_dssp HHHHHTHHHHHHHTCSEEEECCCEEC----CCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHTT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEecCcc
Confidence 36888899999999999999776332 222344544332 2 3344444443 7999999987553
Q ss_pred CCCCcc----------------eeecCC-----------------------------C----ccccHHHHHHHHHHHHHH
Q 014017 225 SSDGHD----------------GIVRED-----------------------------G----VIMNDETVHQLCKQAVSQ 255 (432)
Q Consensus 225 TshGHc----------------GIl~~~-----------------------------g----~IdND~Tl~~Lak~Avs~ 255 (432)
+..|- -+.+++ + ...|.+..+.|.+.+.-.
T Consensus 105 -s~~~~~f~~~~~~~~~~y~d~y~~~~~p~~~~~~f~~~~w~~~~~~~~~y~~~f~~~~pdLN~~np~Vr~~i~~~~~~W 183 (543)
T 2zic_A 105 -SDEHAWFIEAREHPDSSERDYYIWCDQPNDLESIFGGSAWQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIYDMMNFW 183 (543)
T ss_dssp -CTTSHHHHHHHHCTTSGGGGGBCEESSCCSCBCTTSSBSEEEETTTTEEEECSSCTTSCBBCTTCHHHHHHHHHHHHHH
T ss_pred -cccchhhHhhhcCCCCCCcceeecCCCCCcccccCCCCCCcccCCCCcEEECcccCCCCccCcCCHHHHHHHHHHHHHH
Confidence 22231 011100 0 134778888899999888
Q ss_pred HHcCCCee
Q 014017 256 ARAGADVV 263 (432)
Q Consensus 256 A~AGADiV 263 (432)
.+.|+|-+
T Consensus 184 l~~GvDGf 191 (543)
T 2zic_A 184 IDKGIGGF 191 (543)
T ss_dssp HTTTCCEE
T ss_pred HhcCCCEE
Confidence 99999865
No 417
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=30.25 E-value=1.1e+02 Score=29.06 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=28.7
Q ss_pred hhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 358 YLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 358 YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
.++.++++++.. ++||.+ .|-|..-+-+.|.| ++|||+|--+
T Consensus 275 ~~~~i~~i~~~~~~~ipVi~---------------~GGI~~~~da~~~l----~~GAd~V~ig 318 (336)
T 1f76_A 275 STEIIRRLSLELNGRLPIIG---------------VGGIDSVIAAREKI----AAGASLVQIY 318 (336)
T ss_dssp HHHHHHHHHHHHTTSSCEEE---------------ESSCCSHHHHHHHH----HHTCSEEEES
T ss_pred HHHHHHHHHHHhCCCCCEEE---------------ECCCCCHHHHHHHH----HCCCCEEEee
Confidence 368999999987 799886 34444434445544 4799999544
No 418
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=30.17 E-value=93 Score=24.01 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-----CCC-eEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-----PLP-IAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-----~lP-vaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +..|+|++- |++.=+++++.+++.. ..| +..+.-+++......+.+.|..+
T Consensus 37 ~~~~~~a~~~~~----~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~ 108 (136)
T 1dcf_A 37 VSSNEECLRVVS----HEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDG 108 (136)
T ss_dssp ESSHHHHHHHCC----TTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCE
T ss_pred eCCHHHHHHHHh----ccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCe
Confidence 457778776542 222999886 5555678999998532 344 66777777777777777777654
No 419
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=30.15 E-value=46 Score=29.69 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=49.6
Q ss_pred ccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEE---EEechhhHHHHHHHHC
Q 014017 321 YVIRVIELYANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA---YQVSGEYSMIKAGGAL 391 (432)
Q Consensus 321 YQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaa---YqVSGEYaMikaAa~~ 391 (432)
-=+| +.|..|+++.+.. ..+..|++ |.+..+ .++|+.+|+.+ +.++.. ...-++.. ++.+++.
T Consensus 8 lalD----~~~~~~~~~~~~~-~~~~v~~~--kv~~~~f~~~G~~~i~~l~~~~p~~~v~lD~kl~dip~t~-~~~~~~~ 79 (216)
T 1q6o_A 8 VALD----NQTMDSAYETTRL-IAEEVDII--EVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKIL-SRMCFEA 79 (216)
T ss_dssp EEEC----CSSHHHHHHHHHH-HGGGCSEE--EECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHH-HHHHHHT
T ss_pred EEEC----CCCHHHHHHHHHH-hcccCCEE--EECHHHHHHhCHHHHHHHHHhCCCCeEEEEEEecccHHHH-HHHHHhC
Confidence 3467 8888988877642 33456764 777653 68999999985 355542 22234433 3455566
Q ss_pred CC-------chhhHHHHHHHHHHHHcCcc
Q 014017 392 KM-------IDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 392 G~-------id~~~~~~EsL~~ikRAGAd 413 (432)
|. .-....+-+.+..+++.|..
T Consensus 80 Gad~itvh~~~g~~~l~~~~~~~~~~g~~ 108 (216)
T 1q6o_A 80 NADWVTVICCADINTAKGALDVAKEFNGD 108 (216)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 53 01123445566666666666
No 420
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=30.11 E-value=95 Score=29.02 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=32.2
Q ss_pred hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 359 LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 359 LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.++|+.+|+..++||..= ++.. | |.+ -+.|....+.++|+|.|+.
T Consensus 147 ~~iv~~vr~~~~~Pv~vK-i~~~-----------~-~~~-~~~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 147 EKLLKEVFTFFTKPLGVK-LPPY-----------F-DLV-HFDIMAEILNQFPLTYVNS 191 (311)
T ss_dssp HHHHHHHTTTCCSCEEEE-ECCC-----------C-SHH-HHHHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-----------C-CHH-HHHHHHHHHHHcCCcEEEe
Confidence 589999999989999763 3332 3 333 3456677788899998863
No 421
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=30.09 E-value=1.9e+02 Score=25.84 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCc
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
..|..||+..... +.-|+|++= |.+.=+++++.+|+.. .+||.++.-...-.....+.+.|..
T Consensus 159 a~~~~eal~~l~~---~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~~~G~~ 225 (254)
T 2ayx_A 159 ANDGVDALNVLSK---NHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMD 225 (254)
T ss_dssp ECCSHHHHHHHHH---SCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHHHCCCE
T ss_pred ECCHHHHHHHHHh---CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHcCCc
Confidence 4567788876643 357888864 7777789999999865 6999998766555555555566653
No 422
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=30.08 E-value=55 Score=30.23 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=36.4
Q ss_pred cCCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 144 IGAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 144 I~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
+..+||+ . -.+++.++.+.|...|.+||. . ..| | ...++.++..+|++-++
T Consensus 111 ~~~i~Gv-----~--t~~e~~~A~~~Gad~vk~Fpa--~----~~g-------G--~~~lk~l~~~~~~ipvv 161 (224)
T 1vhc_A 111 FPITPGV-----N--NPMAIEIALEMGISAVKFFPA--E----ASG-------G--VKMIKALLGPYAQLQIM 161 (224)
T ss_dssp CCEECEE-----C--SHHHHHHHHHTTCCEEEETTT--T----TTT-------H--HHHHHHHHTTTTTCEEE
T ss_pred CCEEecc-----C--CHHHHHHHHHCCCCEEEEeeC--c----ccc-------C--HHHHHHHHhhCCCCeEE
Confidence 5667884 1 266788899999999999982 0 000 1 56889999999876654
No 423
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=30.07 E-value=35 Score=35.14 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=35.4
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCC--CCCC-chHHHHHHHHHHCCCccceeec
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPS--DMMD-GRVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPS--DMMD-GrV~aIR~aLD~~Gf~~v~ImS 292 (432)
.-|-++|++|+ ..+++||||+|==+ ||=+ --+..||+.|+..|+ +|++++
T Consensus 34 T~Dv~aTv~QI----~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~-~vPLVA 86 (406)
T 4g9p_A 34 TRDVEATTAQV----LELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGV-EVPLVG 86 (406)
T ss_dssp TTCHHHHHHHH----HHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred cccHHHHHHHH----HHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCC-CCceEe
Confidence 34556777655 56789999998422 3322 246889999999996 788876
No 424
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=30.02 E-value=34 Score=32.57 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhCCCCeEE
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~~lPvaa 375 (432)
..+.+||+.-+. .+. -.+.++|+++.+ .++|+.+|+. +.+|++
T Consensus 36 ~~~~~~al~l~~-~l~--~~v~~~KvG~~l~~~~G~~~v~~Lk~~-g~~Vfl 83 (255)
T 3ldv_A 36 YDNLADALAFVD-KID--PSTCRLKVGKEMFTLFGPDFVRELHKR-GFSVFL 83 (255)
T ss_dssp CSSHHHHHHHHT-TSC--GGGCEEEEEHHHHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCCHHHHHHHHH-HhC--CcCcEEEeCHHHHHhhCHHHHHHHHhc-CCCEEE
Confidence 778888776654 233 345689999877 7889999875 666664
No 425
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=29.97 E-value=1.9e+02 Score=29.13 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCCCeEEEeeecccCC--CCCCcceeecCCCcc---ccHHHHHHHHHHHHHHHHcCCCeec----------
Q 014017 200 PRTIWLLKDRYPDLVIYTDVALDPY--SSDGHDGIVREDGVI---MNDETVHQLCKQAVSQARAGADVVS---------- 264 (432)
Q Consensus 200 ~raIr~iK~~fPdl~IitDVcLc~Y--TshGHcGIl~~~g~I---dND~Tl~~Lak~Avs~A~AGADiVA---------- 264 (432)
..-++.+|+..|++.|++..-=.|. ++.|+. ..+|.+ .-+.--..|++-.-.+.+.|.++-+
T Consensus 124 ~~~lk~A~~~~~~l~i~aspWSpP~wMk~n~~~---~~gg~L~~~~y~~yA~Ylvk~i~~y~~~Gi~i~~is~qNEP~~~ 200 (447)
T 2wnw_A 124 IPLISGALRLNPHMKLMASPWSPPAFMKTNNDM---NGGGKLRRECYADWADIIINYLLEYRRHGINVQALSVQNEPVAV 200 (447)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCCCGGGBTTSCS---BSCCBBCGGGHHHHHHHHHHHHHHHHHTTCCCCEEESCSSTTCC
T ss_pred HHHHHHHHHhCCCcEEEEecCCCcHHhccCCCc---CCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCeeEEeeeccCCCC
Confidence 3456777777899999988766663 344442 012333 2344456788877788889988644
Q ss_pred ---CCCCCCch-----HH-HHHHHHHHCCCccceeecchh
Q 014017 265 ---PSDMMDGR-----VG-AIRAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 265 ---PSDMMDGr-----V~-aIR~aLD~~Gf~~v~ImSYSa 295 (432)
||.-|+.. |+ .++.+|+++|+.+|-||.+-.
T Consensus 201 ~~~~s~~~t~~~~~~fik~~L~p~l~~~gl~~~kI~~~D~ 240 (447)
T 2wnw_A 201 KTWDSCLYSVEEETAFAVQYLRPRLARQGMDEMEIYIWDH 240 (447)
T ss_dssp CSSBCCBCCHHHHHHHHHHTHHHHHHHTTCTTCEEEEEEE
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCC
Confidence 23334432 55 678899999998899987654
No 426
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=29.94 E-value=18 Score=35.81 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK 368 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~ 368 (432)
..+.+||+..+....++| |+|+++|+...+|..+...++
T Consensus 387 ~~~~~~a~~~~~~~~~~g-d~vL~~~a~~S~~~~~~~~~R 425 (439)
T 2x5o_A 387 TETMEQAMRLLAPRVQPG-DMVLLSPACASLDQFKNFEQR 425 (439)
T ss_dssp CSSHHHHHHHHGGGCCTT-CEEEECCSSBSTTTSSSHHHH
T ss_pred cCCHHHHHHHHHHhCCCC-CEEEEcchhhHhhhhhCHHHH
Confidence 458899998887776666 999999999999998766654
No 427
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=29.91 E-value=37 Score=32.07 Aligned_cols=42 Identities=40% Similarity=0.610 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCccceeec
Q 014017 250 KQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMS 292 (432)
Q Consensus 250 k~Avs~A~AGADiVAPS-----DM-MDG--rV~aIR~aLD~~Gf~~v~ImS 292 (432)
.||+.-|+|||++|+|= |. .|| -|..|++.++..|| ++-||.
T Consensus 125 ~QA~laa~AGa~~iSpFVgRidd~g~dG~~~v~~i~~~~~~~~~-~t~iL~ 174 (230)
T 1vpx_A 125 AQAILAAKAGATYVSPFVGRMDDLSNDGMRMLGEIVEIYNNYGF-ETEIIA 174 (230)
T ss_dssp HHHHHHHHHTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHHTC-SCEEEE
T ss_pred HHHHHHHhCCCeEEEeccchhhhccccHHHHHHHHHHHHHHcCC-CeEEEe
Confidence 36888899999999992 11 133 26677788888886 566665
No 428
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=29.75 E-value=44 Score=36.39 Aligned_cols=165 Identities=21% Similarity=0.301 Sum_probs=82.8
Q ss_pred chhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceee
Q 014017 154 GWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIV 233 (432)
Q Consensus 154 si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl 233 (432)
+.+ -+++.++++.+.|...|.| ||..|- ..|+ -+.+-|+.||+++|++. ..-|+|+-.
T Consensus 259 ~~e-~~~~~a~~l~~~Ga~~I~l--------~DT~G~--~~P~-~v~~lV~~lk~~~p~~~---------I~~H~Hnd~- 316 (718)
T 3bg3_A 259 SLQ-YYMGLAEELVRAGTHILCI--------KDMAGL--LKPT-ACTMLVSSLRDRFPDLP---------LHIHTHDTS- 316 (718)
T ss_dssp CHH-HHHHHHHHHHHHTCSEEEE--------ECTTSC--CCHH-HHHHHHHHHHHHSTTCC---------EEEECCCTT-
T ss_pred CHH-HHHHHHHHHHHcCCCEEEE--------cCcCCC--cCHH-HHHHHHHHHHHhCCCCe---------EEEEECCCc-
Confidence 443 4777778888888876655 222221 1111 23466788888887532 335666521
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCC--CC--CCch--HHHHHHHHHHCCCcccee----ecchhhhcc---c
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPS--DM--MDGR--VGAIRAALDAEGFQHVSI----MSYTAKYAS---S 300 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS--DM--MDGr--V~aIR~aLD~~Gf~~v~I----mSYSaKyAS---s 300 (432)
| .=..-++.-.+||||+|=-+ .| .-|. ...+=.+|...|+. +.| +.=.++|.+ .
T Consensus 317 ---G---------lAvANslaAveAGa~~VD~ti~GlGertGN~~lE~vv~~L~~~g~~-tgidl~~L~~~s~~v~~~~~ 383 (718)
T 3bg3_A 317 ---G---------AGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRGTPLD-TEVPMERVFDYSEYWEGARG 383 (718)
T ss_dssp ---S---------CHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTSTTC-CCCCHHHHHHHHHHHHHHHH
T ss_pred ---c---------HHHHHHHHHHHhCCCEEEecCcccccccCchhHHHHHHHHHhcCCC-cccCHHHHHHHHHHHHHHhC
Confidence 1 11234566678999997433 22 1122 45566677777762 332 222333433 5
Q ss_pred cchhhhhhhhCCCCCCCcccc--cccc----------cCC-CCCHHHHHHHHHhchh-cCCcEEEEcCC
Q 014017 301 FYGPFREALDSNPRFGDKKTY--VIRV----------IEL-YANYREALVEAQADES-EGADILLVKPG 355 (432)
Q Consensus 301 fYGPFRdAa~Sap~~gDRktY--Qmd~----------~~~-p~N~~EAlre~~~Di~-EGAD~lMVKPa 355 (432)
+|-||- ..+...-++..-| ||+- -++ .....+.+.+....+. +-.|..+|=|.
T Consensus 384 ~~~~~~--~~~~~~g~~~~v~~~e~pGg~~snl~~q~~~~G~~~~~~~v~~~~~~v~~~lG~~~~Vtp~ 450 (718)
T 3bg3_A 384 LYAAFD--CTATMKSGNSDVYENEIPGGQYTNLHFQAHSMGLGSKFKEVKKAYVEANQMLGDLIKVTPS 450 (718)
T ss_dssp HTGGGC--GGGTCCSCCTTHHHHCCCHHHHHHHHGGGTTTSCTTHHHHHHHHHHHHHHHTTSCCCCTTH
T ss_pred CCcCCc--CCccccccccceeeccCcchHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHcCCCccCCcH
Confidence 666765 1122222444444 2210 000 2233444554444454 67777776554
No 429
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=29.69 E-value=23 Score=35.36 Aligned_cols=17 Identities=41% Similarity=0.460 Sum_probs=15.8
Q ss_pred HHHHHHHHHcCCCeecC
Q 014017 249 CKQAVSQARAGADVVSP 265 (432)
Q Consensus 249 ak~Avs~A~AGADiVAP 265 (432)
..||+.-|+|||..|+|
T Consensus 165 ~~Qa~~aa~AGa~~ISP 181 (334)
T 3hjz_A 165 FCQAVTCANANITLISP 181 (334)
T ss_dssp HHHHHHHHHTTCSEECC
T ss_pred HHHHHHHHHcCCcEEEe
Confidence 56899999999999999
No 430
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=29.57 E-value=47 Score=30.22 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=38.2
Q ss_pred CCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEe----chhh------HHHHHHHHCCCc--hh-----hHHHHHHHHHHH
Q 014017 346 GADILLVKPGLPYLDVIRLLRDKYPLPIAAYQV----SGEY------SMIKAGGALKMI--DE-----QRVMMESLMCLR 408 (432)
Q Consensus 346 GAD~lMVKPal~YLDII~~vk~~~~lPvaaYqV----SGEY------aMikaAa~~G~i--d~-----~~~~~EsL~~ik 408 (432)
+.+ +.+.|...|| +.+|+.+++||.+=+| +|-| .|++.+...+.+ +. ..-+-|.+...+
T Consensus 33 ~~~-~~~~~~~~~l---~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~ 108 (219)
T 2h6r_A 33 GIT-IGVAPQFVDL---RMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCK 108 (219)
T ss_dssp TCC-EEEECCTTTH---HHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHH
T ss_pred CCc-EEEECCHHHH---HHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHH
Confidence 455 5678887887 4556667999998333 3332 344443322211 10 012455566667
Q ss_pred HcCccEeehh
Q 014017 409 RAGADIILTY 418 (432)
Q Consensus 409 RAGAd~IiTY 418 (432)
+.|-+.|+.-
T Consensus 109 ~~Gl~~iv~v 118 (219)
T 2h6r_A 109 NLGLETIVCT 118 (219)
T ss_dssp HHTCEEEEEE
T ss_pred HCCCeEEEEe
Confidence 7777776654
No 431
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=29.54 E-value=1.8e+02 Score=28.43 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeec---------CC--CCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK---------VP--DALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv---------i~--~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
+..+.++.+.+.|...|-|.+- -| +.-.|+.|..--|.--++.+.++.+|+.+++--|.. -|.++..
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~v--rls~~~~ 239 (364)
T 1vyr_A 162 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGI--RVSPIGT 239 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEE--EECCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEE--EEccccc
Confidence 3556666678999999999542 02 233566665544444566778999999996313432 2343311
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
+.|+- . + ..+++...+.|-.+.++|+|.|.-+.
T Consensus 240 --~~~~~-~-~----~~~~~~~~~~a~~l~~~G~d~i~v~~ 272 (364)
T 1vyr_A 240 --FQNVD-N-G----PNEEADALYLIEELAKRGIAYLHMSE 272 (364)
T ss_dssp --BTTBC-C-C----TTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred --ccccc-C-C----CCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 11111 1 1 22555566666677899999998664
No 432
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=29.51 E-value=47 Score=31.07 Aligned_cols=44 Identities=34% Similarity=0.502 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCeecCC-----CC-CCc--hHHHHHHHHHHCCCccceeecc
Q 014017 249 CKQAVSQARAGADVVSPS-----DM-MDG--RVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 249 ak~Avs~A~AGADiVAPS-----DM-MDG--rV~aIR~aLD~~Gf~~v~ImSY 293 (432)
..||+.-|+|||++|+|= |. .|| .|..|++.++..|| ++-||.=
T Consensus 121 ~~Qa~~aa~AGa~~iSpFVgRidd~g~~G~~~v~~i~~~~~~~~~-~t~vl~A 172 (223)
T 1wx0_A 121 ANQALLAARAGASYVSPFLGRVDDISWDGGELLREIVEMIQVQDL-PVKVIAA 172 (223)
T ss_dssp HHHHHHHHHTTCSEEEEBHHHHHHTTSCHHHHHHHHHHHHHHTTC-SCEEEEB
T ss_pred HHHHHHHHHCCCeEEEeccchHhhcCCCHHHHHHHHHHHHHHcCC-CeEEeec
Confidence 348888899999999992 11 133 36777888888886 6666653
No 433
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=29.47 E-value=2.2e+02 Score=28.26 Aligned_cols=129 Identities=9% Similarity=0.048 Sum_probs=72.3
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC---HHHHHHHHHHHC-CCeEEEeeecccCCCCCC----
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---VPRTIWLLKDRY-PDLVIYTDVALDPYSSDG---- 228 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~---v~raIr~iK~~f-Pdl~IitDVcLc~YTshG---- 228 (432)
+.+.+.++++++.|.+.+-|+|. +. .+. ++...- ..+-++++++.+ ||+-|+.|.. +.||-.-
T Consensus 127 e~~~~~a~~~~~~G~~~iKl~G~-~~--~~~-----~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN-~~~~~~~A~~~ 197 (405)
T 3rr1_A 127 ADVIAGMKALQAGGFDHFKLNGC-EE--MGI-----IDTSRAVDAAVARVAEIRSAFGNTVEFGLDFH-GRVSAPMAKVL 197 (405)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESC-CS--SSC-----BCSHHHHHHHHHHHHHHHHTTGGGSEEEEECC-SCBCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecC-Cc--ccc-----cccchhHHHHHHHHHHHHHHhCCCceEEEECC-CCCCHHHHHHH
Confidence 36899999999999999999774 21 110 110001 145678888888 6888888864 3343100
Q ss_pred -----ccee--ecCCCccccHHHHHHHHH----------------HHHHHHH-cCCCeecCCCCCCchHHHHHHHHHHCC
Q 014017 229 -----HDGI--VREDGVIMNDETVHQLCK----------------QAVSQAR-AGADVVSPSDMMDGRVGAIRAALDAEG 284 (432)
Q Consensus 229 -----HcGI--l~~~g~IdND~Tl~~Lak----------------~Avs~A~-AGADiVAPSDMMDGrV~aIR~aLD~~G 284 (432)
-.|+ +.+.=.-+|-+.+..|.+ .+....+ -++|+|.|.=+-=|=+...++..+.+-
T Consensus 198 ~~~L~~~~i~~iEeP~~~~d~~~~~~l~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGitea~kia~lA~ 277 (405)
T 3rr1_A 198 IKELEPYRPLFIEEPVLAEQAETYARLAAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGITECVKIAAMAE 277 (405)
T ss_dssp HHHHGGGCCSCEECSSCCSSTHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEECCCCcccHHHHHHHHhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHHHHHHHHHHHH
Confidence 0011 111101123333333332 2333333 459999998887777776666655443
Q ss_pred Cccceeecch
Q 014017 285 FQHVSIMSYT 294 (432)
Q Consensus 285 f~~v~ImSYS 294 (432)
-.++.+|..+
T Consensus 278 ~~gi~v~~h~ 287 (405)
T 3rr1_A 278 AYDVALAPHC 287 (405)
T ss_dssp TTTCEECCBC
T ss_pred HcCCEEEeCC
Confidence 3456666653
No 434
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=29.37 E-value=27 Score=32.83 Aligned_cols=50 Identities=24% Similarity=0.468 Sum_probs=38.6
Q ss_pred CCCCCceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 145 GAMPGCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 145 ~sMPGv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
..|||+. -..|+..+.++|..-|-+||- + ..| | ...|+.||.-||++-++
T Consensus 114 ~~~PG~~-------TptE~~~A~~~Gad~vK~FPa---~---~~g-------G--~~~lkal~~p~p~i~~~ 163 (217)
T 3lab_A 114 VFLPGVA-------TASEVMIAAQAGITQLKCFPA---S---AIG-------G--AKLLKAWSGPFPDIQFC 163 (217)
T ss_dssp EEEEEEC-------SHHHHHHHHHTTCCEEEETTT---T---TTT-------H--HHHHHHHHTTCTTCEEE
T ss_pred eEeCCCC-------CHHHHHHHHHcCCCEEEECcc---c---ccc-------C--HHHHHHHHhhhcCceEE
Confidence 7888881 367889999999999999973 1 011 2 47899999999998776
No 435
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=29.33 E-value=36 Score=31.69 Aligned_cols=44 Identities=9% Similarity=0.186 Sum_probs=20.1
Q ss_pred cCCcEEEE-cCCCchhHHHHHHHh-hCCCCeEEEEechhhHHHHHH
Q 014017 345 EGADILLV-KPGLPYLDVIRLLRD-KYPLPIAAYQVSGEYSMIKAG 388 (432)
Q Consensus 345 EGAD~lMV-KPal~YLDII~~vk~-~~~lPvaaYqVSGEYaMikaA 388 (432)
.++|.|++ =....-.-+++.+++ ..+.|+....-...-.+++.+
T Consensus 197 ~~~dav~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 242 (392)
T 3lkb_A 197 AGVEYVVHQNVAGPVANILKDAKRLGLKMRHLGAHYTGGPDLIALA 242 (392)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCSHHHHHHH
T ss_pred cCCCEEEEecCcchHHHHHHHHHHcCCCceEEEecCcccHHHHHhh
Confidence 56777775 221222334445444 235565544333334455543
No 436
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=29.23 E-value=2.5e+02 Score=26.61 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=86.8
Q ss_pred eechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCC--CeEEEeeecccCCCCCCc
Q 014017 152 RLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYP--DLVIYTDVALDPYSSDGH 229 (432)
Q Consensus 152 r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fP--dl~IitDVcLc~YTshGH 229 (432)
++..+ .+.+.++.+++.|+..+.+.|.. |+...=...=-.+.++...+... .+-||+=+
T Consensus 24 ~iD~~-~l~~lv~~li~~Gv~gl~v~Gtt--------GE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGv---------- 84 (301)
T 3m5v_A 24 KVDEQ-SYARLIKRQIENGIDAVVPVGTT--------GESATLTHEEHRTCIEIAVETCKGTKVKVLAGA---------- 84 (301)
T ss_dssp EECHH-HHHHHHHHHHHTTCCEEECSSTT--------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEEC----------
T ss_pred CCCHH-HHHHHHHHHHHcCCCEEEECccc--------cChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeC----------
Confidence 34453 58889999999999999999862 22222111112345555555443 34455321
Q ss_pred ceeecCCCccccHHHHHHHHHHHHHHHHcCCCee---cCCC---CCCchHHHHHHHHHHCCCccceeecchhhhccccch
Q 014017 230 DGIVREDGVIMNDETVHQLCKQAVSQARAGADVV---SPSD---MMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 230 cGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiV---APSD---MMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG 303 (432)
|..+-++|++ .|-..+++|||.| .|.= --+|-+...|+..+.. +++||=|-.
T Consensus 85 -------g~~~t~~ai~----la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~---~lPiilYn~-------- 142 (301)
T 3m5v_A 85 -------GSNATHEAVG----LAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSV---DIPVLLYNV-------- 142 (301)
T ss_dssp -------CCSSHHHHHH----HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC---SSCEEEEEC--------
T ss_pred -------CCCCHHHHHH----HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC---CCCEEEEeC--------
Confidence 2223344543 3334467899965 3321 1267777788777765 578887731
Q ss_pred hhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhC
Q 014017 304 PFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKY 369 (432)
Q Consensus 304 PFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~ 369 (432)
|- |..+.|+ -|-+.+... .--.++-+|=+..=++-+.++.+.+
T Consensus 143 P~------------~tg~~l~--------~~~~~~La~---~~pnivgiKdssgd~~~~~~~~~~~ 185 (301)
T 3m5v_A 143 PG------------RTGCEIS--------TDTIIKLFR---DCENIYGVKEASGNIDKCVDLLAHE 185 (301)
T ss_dssp HH------------HHSCCCC--------HHHHHHHHH---HCTTEEEEEECSSCHHHHHHHHHHC
T ss_pred ch------------hhCcCCC--------HHHHHHHHh---cCCCEEEEEeCCCCHHHHHHHHHhC
Confidence 21 2334555 344555542 2135889997766566666666554
No 437
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=29.23 E-value=98 Score=28.86 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=58.3
Q ss_pred HHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------
Q 014017 201 RTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD-------- 270 (432)
Q Consensus 201 raIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD-------- 270 (432)
.-.+.|++..|+ ++-++|....||-. -..++-.+.+.+.+-.+.++|||.|.=..--+
T Consensus 26 tv~~~i~~~~P~~~~iy~~D~~~~Pyg~------------~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~l 93 (273)
T 2oho_A 26 TVVCELIRQLPHEKIVYIGDSARAPYGP------------RPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEV 93 (273)
T ss_dssp HHHHHHHHHCTTCCEEEEECGGGCCCTT------------SCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEeCCCCCCCCC------------CCHHHHHHHHHHHHHHHHHCCCCEEEEeCchHhHHHHHHH
Confidence 477888888984 66679999889821 12344455566666666778999875432222
Q ss_pred ---------c-hHHHHHHHHHHCCCccceeecchhhhccccch
Q 014017 271 ---------G-RVGAIRAALDAEGFQHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 271 ---------G-rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYG 303 (432)
| -..+++.++...+..+++||+=..--.|.+|-
T Consensus 94 r~~~~iPvigi~epa~~~A~~~~~~~rIgVlaT~~T~~~~~y~ 136 (273)
T 2oho_A 94 KAALDIPVLGVVLPGASAAIKSTTKGQVGVIGTPMTVASDIYR 136 (273)
T ss_dssp HHHCSSCEEESHHHHHHHHHHHCSSSEEEEEECHHHHHHTHHH
T ss_pred HHhCCCCEEeccHHHHHHHHHhcCCCeEEEEECchhhcchHHH
Confidence 2 22346666665566788888765555666763
No 438
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=29.07 E-value=70 Score=31.42 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=31.8
Q ss_pred HHHHHHHHHhchhcCCcEEEEcCCC--c-----hhHHHHHHHhhCCCCeEE
Q 014017 332 YREALVEAQADESEGADILLVKPGL--P-----YLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 332 ~~EAlre~~~Di~EGAD~lMVKPal--~-----YLDII~~vk~~~~lPvaa 375 (432)
..++...++.=.+.|+|.|||= .. . -.+++..+|+.+++|+.-
T Consensus 52 ~~~~~~~~~~~~~sGtDai~VG-S~~vt~~~~~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 52 VTEAVEKAAELTRLGFAAVLLA-STDYESFESHMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEE-CSCCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHHHhcCCCEEEEc-cCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 4554433333356799999999 75 2 367899999999999987
No 439
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=28.93 E-value=1.2e+02 Score=30.92 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=40.0
Q ss_pred hhcCCcEEEEcCCCc-----------------------hhHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhh
Q 014017 343 ESEGADILLVKPGLP-----------------------YLDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQ 397 (432)
Q Consensus 343 i~EGAD~lMVKPal~-----------------------YLDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~ 397 (432)
++.|+|.|.|=-... .+++|+++++.. ++||.+ .|-|..-
T Consensus 321 ~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg---------------~GGI~s~ 385 (443)
T 1tv5_A 321 LETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIA---------------SGGIFSG 385 (443)
T ss_dssp HHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEE---------------ESSCCSH
T ss_pred HHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEE---------------ECCCCCH
Confidence 457999998755321 378999999988 899986 3344444
Q ss_pred HHHHHHHHHHHHcCccEeehhc
Q 014017 398 RVMMESLMCLRRAGADIILTYF 419 (432)
Q Consensus 398 ~~~~EsL~~ikRAGAd~IiTYf 419 (432)
+-+.|.| ++|||+|--|=
T Consensus 386 ~DA~e~l----~aGAd~Vqigr 403 (443)
T 1tv5_A 386 LDALEKI----EAGASVCQLYS 403 (443)
T ss_dssp HHHHHHH----HTTEEEEEESH
T ss_pred HHHHHHH----HcCCCEEEEcH
Confidence 4445554 48999986543
No 440
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=28.74 E-value=1.3e+02 Score=27.92 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~ 235 (432)
..+.+++++++.|-..|-+.-.+. ..|+ .....+.+=|+.+++..++ |=||-..|+
T Consensus 72 ~k~~e~~~Ai~~GAdevd~vinig-~~~~-------g~~~~v~~ei~~v~~a~~~~~lkvIlet~~-------------- 129 (220)
T 1ub3_A 72 VKALEAALACARGADEVDMVLHLG-RAKA-------GDLDYLEAEVRAVREAVPQAVLKVILETGY-------------- 129 (220)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHH-HHHT-------TCHHHHHHHHHHHHHHSTTSEEEEECCGGG--------------
T ss_pred HHHHHHHHHHHcCCCEEEecccch-hhhC-------CCHHHHHHHHHHHHHHHcCCCceEEEecCC--------------
Confidence 478999999999999998743222 1121 1224567788888887654 444544443
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
. +|+-+...+++| +++|||+|=.|-
T Consensus 130 ---l-~~e~i~~a~~ia---~eaGADfVKTsT 154 (220)
T 1ub3_A 130 ---F-SPEEIARLAEAA---IRGGADFLKTST 154 (220)
T ss_dssp ---S-CHHHHHHHHHHH---HHHTCSEEECCC
T ss_pred ---C-CHHHHHHHHHHH---HHhCCCEEEeCC
Confidence 3 355566666665 589999998884
No 441
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=28.66 E-value=1.2e+02 Score=29.86 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=27.5
Q ss_pred hhcCCcEEEEcCCC----chhHHHHHHHhhC-CCCeEEEEe
Q 014017 343 ESEGADILLVKPGL----PYLDVIRLLRDKY-PLPIAAYQV 378 (432)
Q Consensus 343 i~EGAD~lMVKPal----~YLDII~~vk~~~-~lPvaaYqV 378 (432)
++.|+|.|-+=.+. ..+++|+.+|+.+ ++||.+-.|
T Consensus 162 ~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v 202 (404)
T 1eep_A 162 VKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNI 202 (404)
T ss_dssp HHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred HHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCC
Confidence 57899999873322 3689999999999 799997444
No 442
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=28.65 E-value=49 Score=32.46 Aligned_cols=81 Identities=14% Similarity=0.208 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.+.+.++++.++|...|=+ ++ |+-..++ ..=.++|++.-+.+.|++.| |.- ++
T Consensus 111 ~~~~yl~~~k~lGF~~IEI----Sd------Gti~l~~----~~~~~lI~~a~~~f~Vl~Ev-----------G~K--~~ 163 (276)
T 1u83_A 111 KVNEFHRYCTYFGCEYIEI----SN------GTLPMTN----KEKAAYIADFSDEFLVLSEV-----------GSK--DA 163 (276)
T ss_dssp CHHHHHHHHHHTTCSEEEE----CC------SSSCCCH----HHHHHHHHHHTTTSEEEEEC-----------SCC--C-
T ss_pred cHHHHHHHHHHcCCCEEEE----CC------CcccCCH----HHHHHHHHHHHhhcEEeeec-----------ccc--Cc
Confidence 4778999999999999887 21 2211211 12234555555668899888 332 23
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecC
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSP 265 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAP 265 (432)
..+.-.+++.+.+++-..-+||||.|--
T Consensus 164 ~~~~~~~~~~~I~~~~~dLeAGA~~Vii 191 (276)
T 1u83_A 164 ELASRQSSEEWLEYIVEDMEAGAEKVIT 191 (276)
T ss_dssp -----CCSTHHHHHHHHHHHHTEEEEEE
T ss_pred cccCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3344567889999999999999999943
No 443
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=28.64 E-value=1.3e+02 Score=29.20 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCchh
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMIDE 396 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id~ 396 (432)
..|..||+.... ++..|+|++= |++.=+++++.+|+.. .+|+....-.++-.....|.+.|..|.
T Consensus 30 a~~~~eal~~l~---~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dy 98 (387)
T 1ny5_A 30 AERGKEAYKLLS---EKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDF 98 (387)
T ss_dssp ESSHHHHHHHHH---HSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEE
T ss_pred ECCHHHHHHHHH---hCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEE
Confidence 567788887664 3468999875 7777789999999876 599999888888888888889998663
No 444
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=28.58 E-value=40 Score=31.52 Aligned_cols=94 Identities=23% Similarity=0.311 Sum_probs=50.2
Q ss_pred CcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCccee--ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCC---
Q 014017 192 AYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGI--VREDGVIMNDETVHQLCKQAVSQARAGADVVSPS--- 266 (432)
Q Consensus 192 A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGI--l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS--- 266 (432)
++|.++.+.+|.++.+ .+|+++|= -|-|-.|.--+ +...| |.-..|+=--..||+.-|+|||++|+|=
T Consensus 62 a~d~e~mi~eA~~l~~-~~~nv~IK-----IP~T~eGl~A~~~L~~~G-I~vn~TliFS~~QA~~aa~AGa~~iSpfvgR 134 (220)
T 1l6w_A 62 ATTAEGMVNDALKLRS-IIADIVVK-----VPVTAEGLAAIKMLKAEG-IPTLGTAVYGAAQGLLSALAGAEYVAPYVNR 134 (220)
T ss_dssp CSSHHHHHHHHHHHHH-HSTTCEEE-----EECSHHHHHHHHHHHHHT-CCEEEEEECSHHHHHHHHHHTCSEEEEBHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCCEEEE-----eCCCHHHHHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHCCCeEEEeccch
Confidence 4556666666666544 34665442 14442222111 11111 1111222223457888999999999992
Q ss_pred --CC-CCc--hHHHHHHHHHHCCCccceeecc
Q 014017 267 --DM-MDG--RVGAIRAALDAEGFQHVSIMSY 293 (432)
Q Consensus 267 --DM-MDG--rV~aIR~aLD~~Gf~~v~ImSY 293 (432)
|. .|| .|..|++.++..|| ++-||.=
T Consensus 135 idd~g~~G~~~i~~~~~~y~~~~~-~t~il~A 165 (220)
T 1l6w_A 135 IDAQGGSGIQTVTDLHQLLKMHAP-QAKVLAA 165 (220)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHCT-TCEEEEB
T ss_pred hhcccccHHHHHHHHHHHHHhcCC-CeEEeec
Confidence 11 133 36777788888886 6666653
No 445
>3kdn_A Rubisco, ribulose bisphosphate carboxylase; ribulose-1,5-bisphosphate carboxylase/oxygenase, Ca dioxide fixation, lyase, magnesium; HET: KCX CAP; 2.09A {Thermococcus kodakaraensis} PDB: 3a13_A* 3kdo_A* 3a12_A* 1geh_A*
Probab=28.39 E-value=57 Score=33.79 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccc
Q 014017 244 TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVI 323 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQm 323 (432)
|-+.+++++..++..|.|+|= |.+++.+-+-|-+--.+.-+. ---+.|-+.+ |.+|-|-+
T Consensus 169 s~~~~a~~~ye~~~GGlDfiK----------------DDE~l~~qpf~p~~eRv~~v~-eai~rA~~eT---Ge~k~y~~ 228 (444)
T 3kdn_A 169 SPEEFEKLAYDLLSNGADYMK----------------DDENLTSPWYNRFEERAEIMA-KIIDKVENET---GEKKTWFA 228 (444)
T ss_dssp CHHHHHHHHHHHHHTTCCEEE----------------CCTTCCSCTTSCHHHHHHHHH-HHHHHHHHHH---CCCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCceee----------------cCcCCCCCCCCCHHHHHHHHH-HHHHHHHHhh---CCcceEEe
Confidence 567889999999999999973 334443333332222211100 0001112222 78899999
Q ss_pred cccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh---CCCCeEEEEechhhHHHHHHHHCCCchhhHHH
Q 014017 324 RVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK---YPLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 400 (432)
Q Consensus 324 d~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~---~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~ 400 (432)
|+. +...|.++.++.=.+.|++++||=+-..=++.+..+++. .++|+-+ |=-|-=++... -..|+ +. . +
T Consensus 229 NiT---a~~~eM~~Ra~~a~e~G~~~~mvd~~~~G~~a~~~l~~~~~~~~l~lh~-HrA~~ga~~r~-~~hGi-~~-~-v 300 (444)
T 3kdn_A 229 NIT---ADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHG-HRAMHAAFTRN-PYHGI-SM-F-V 300 (444)
T ss_dssp ECC---SSHHHHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHHHHHTCEEEE-ECTTTHHHHSC-TTSEE-CH-H-H
T ss_pred ecC---CCHHHHHHHHHHHHHcCCCEEEEccccccHHHHHHHHHhccccCeEEEE-ccCcccccccC-CCCCc-CH-H-H
Confidence 833 347888999988889999999998744446888888874 5688864 44332111111 12343 22 2 2
Q ss_pred HHHHHHHHHcCccEeeh
Q 014017 401 MESLMCLRRAGADIILT 417 (432)
Q Consensus 401 ~EsL~~ikRAGAd~IiT 417 (432)
.-+.+|=||+|.|++
T Consensus 301 --l~Kl~RLaG~D~ih~ 315 (444)
T 3kdn_A 301 --LAKLYRLIGIDQLHV 315 (444)
T ss_dssp --HHHHHHHHTCSEEEC
T ss_pred --HHHHHHHcCCCeeec
Confidence 234567799999987
No 446
>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} SCOP: c.1.14.1 d.58.9.1 PDB: 1tel_A
Probab=28.38 E-value=46 Score=34.38 Aligned_cols=144 Identities=19% Similarity=0.232 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccc
Q 014017 244 TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVI 323 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQm 323 (432)
|-+.+++++..++..|.|+|= |.++..+-+-|-+--.+-- -.---+.|-+.+ |.+|-|-+
T Consensus 178 s~~~~a~~~ye~~~GGlDfiK----------------DDE~~~~qpf~p~~eR~~~-v~eai~~a~~eT---Ge~k~~~~ 237 (435)
T 1ykw_A 178 SPGEFAEIAYQSWLGGLDIAK----------------DDEMLADVTWSSIEERAAH-LGKARRKAEAET---GEPKIYLA 237 (435)
T ss_dssp CHHHHHHHHHHHHHTTCSEEE----------------CCTTCSSBTTBCHHHHHHH-HHHHHHHHHHHH---SSCCEEEE
T ss_pred CHHHHHHHHHHHHhcCCCccc----------------CccccCCCCCCcHHHHHHH-HHHHHHHHHHhh---CCcceeec
Confidence 567889999999999999974 3344444443333333210 001111122222 77888888
Q ss_pred cccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHH
Q 014017 324 RVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMES 403 (432)
Q Consensus 324 d~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~Es 403 (432)
|+. +...|.++.++.=.+.|++++||=+-..=++.++.+++..++|+-+ |=-|-=++. ---..|+ +. ++ +
T Consensus 238 NiT---~~~~em~~Ra~~a~e~G~~~~mvd~~~~G~~a~~~l~~~~~l~lh~-HrA~hg~~~-r~~~~Gi-~~-~v-l-- 307 (435)
T 1ykw_A 238 NIT---DEVDSLMEKHDVAVRNGANALLINALPVGLSAVRMLSNYTQVPLIG-HFPFIASFS-RMEKYGI-HS-KV-M-- 307 (435)
T ss_dssp ECC---CCGGGHHHHHHHHHHHTCCEEEEEHHHHCHHHHHHHHHHCSSCEEE-ECTTTHHHH-CSTTSEE-CH-HH-H--
T ss_pred ccC---CCHHHHHHHHHHHHHcCCCEEEEeccccChHHHHHHHhcCCCeEEE-ccCcceecc-CCCCCCc-CH-HH-H--
Confidence 833 4778888888887889999999987654478899988888899864 443321111 1111232 22 23 3
Q ss_pred HHHHHHcCccEeeh
Q 014017 404 LMCLRRAGADIILT 417 (432)
Q Consensus 404 L~~ikRAGAd~IiT 417 (432)
-+.+|=+|||.|++
T Consensus 308 ~Kl~RlaG~D~ih~ 321 (435)
T 1ykw_A 308 TKLQRLAGLDAVIM 321 (435)
T ss_dssp HHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCeeec
Confidence 45677799999985
No 447
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=28.29 E-value=1.1e+02 Score=28.96 Aligned_cols=155 Identities=11% Similarity=0.057 Sum_probs=88.0
Q ss_pred HHHHHHHHCC--CeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCch--HHHHH
Q 014017 202 TIWLLKDRYP--DLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR--VGAIR 277 (432)
Q Consensus 202 aIr~iK~~fP--dl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGr--V~aIR 277 (432)
..|.|++..| +++-++|..-+|| |.=+-|+-.+.+.+.+-.+.++|||+|.=..=-.-. +..+|
T Consensus 22 v~~~i~~~lp~~~~iy~~D~a~~PY------------G~~~~~~i~~~~~~~~~~L~~~g~~~iVIACNTa~~~al~~lr 89 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFGDIARIPY------------GTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQ 89 (268)
T ss_dssp HHHHHHHHCTTCCEEEEECTTTCCC------------TTSCHHHHHHHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEecCCCCCCC------------CCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHH
Confidence 4778888898 5888999999999 223456666667777777788999988643322222 24555
Q ss_pred HHH-H-------------HCCCccceeecchhhhccccchhhhhhhhC--------CCCCCCc-ccccccccCCCCCHHH
Q 014017 278 AAL-D-------------AEGFQHVSIMSYTAKYASSFYGPFREALDS--------NPRFGDK-KTYVIRVIELYANYRE 334 (432)
Q Consensus 278 ~aL-D-------------~~Gf~~v~ImSYSaKyASsfYGPFRdAa~S--------ap~~gDR-ktYQmd~~~~p~N~~E 334 (432)
+.+ + ..+..+|+||+=.+--.|.+|.-.=+..+. .|.+-.- +.-+.+ -...++
T Consensus 90 ~~~~~iPvigiiep~~~~~~~~~~IGVLaT~~Ti~s~~y~~~l~~~~~~~~V~~~~~~~lV~~vE~g~~~----~~~~~~ 165 (268)
T 3out_A 90 EIAKAIPVIDVITAGVSLVDNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVS----GHIVEL 165 (268)
T ss_dssp HHHTTSCEEEHHHHHHHTTTTCSEEEEEECHHHHHHTHHHHHHHHHCTTSEEEEEECTTHHHHHHTTCCS----SHHHHH
T ss_pred HhcCCCCEEeccHHHHHHhccCCeEEEEecCcccccHHHHHHHHHhCCCCEEecCCChHHHHHHHcCCcC----CHHHHH
Confidence 555 1 234467889887776777777432222211 1111000 011111 112356
Q ss_pred HHHHHHhchh-cCCcEEEEcCCCchhHHHHHHHhhCCCCe
Q 014017 335 ALVEAQADES-EGADILLVKPGLPYLDVIRLLRDKYPLPI 373 (432)
Q Consensus 335 Alre~~~Di~-EGAD~lMVKPal~YLDII~~vk~~~~lPv 373 (432)
.+++....+. +|+|.|+.==. -|--+...+++..++|+
T Consensus 166 ~l~~~l~~l~~~g~D~iILGCT-h~pll~~~i~~~~~v~v 204 (268)
T 3out_A 166 VAKEYLSYFHDKNIQALILGCT-HYPIIKESIAKILDVKL 204 (268)
T ss_dssp HHHHHHGGGTTSCCSEEEECST-TGGGGHHHHHHHCCSEE
T ss_pred HHHHHHHHHHhCCCCEEEECCC-ChHHHHHHHhcCCCCce
Confidence 6666666664 68998876432 23333444444444554
No 448
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=28.25 E-value=93 Score=29.77 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=24.2
Q ss_pred hhcCCcEEEE--------------cC------------CCchhHHHHHHHhhC-CCCeEE
Q 014017 343 ESEGADILLV--------------KP------------GLPYLDVIRLLRDKY-PLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMV--------------KP------------al~YLDII~~vk~~~-~lPvaa 375 (432)
++.|+|.|.| +. +.+.++.|.++++.. ++||.+
T Consensus 202 ~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia 261 (332)
T 1vcf_A 202 RDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVA 261 (332)
T ss_dssp TTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEE
T ss_pred HHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEE
Confidence 5679999988 22 236678888888877 688865
No 449
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=28.23 E-value=93 Score=29.00 Aligned_cols=45 Identities=16% Similarity=0.419 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV 219 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDV 219 (432)
.+...++.+.+.|.++|.+.-.+-. +.+++.|.+.||++.|+|+.
T Consensus 151 Tl~~ai~~L~~~G~~~I~~~~lv~~-----------------~~g~~~l~~~~p~v~I~t~~ 195 (221)
T 1o5o_A 151 SSIKAIEILKENGAKKITLVALIAA-----------------PEGVEAVEKKYEDVKIYVAA 195 (221)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSEEC-----------------HHHHHHHHHHCTTCEEEESE
T ss_pred HHHHHHHHHHHcCCCEEEEEEEEeC-----------------HHHHHHHHHHCCCcEEEEEe
Confidence 4888999999999999888543221 34899999999999999863
No 450
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=28.10 E-value=1.7e+02 Score=22.61 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCC-CCeEEEEe
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYP-LPIAAYQV 378 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~-lPvaaYqV 378 (432)
..|..||+..... +..|+|++- |.+.-+++++.+++..+ .|+....-
T Consensus 41 ~~~~~~al~~l~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 91 (143)
T 2qv0_A 41 FDDGLDVLKFLQH---NKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITA 91 (143)
T ss_dssp ESCHHHHHHHHHH---CCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEES
T ss_pred eCCHHHHHHHHHh---CCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEeC
Confidence 5688888877653 458999987 56667899999998765 45666543
No 451
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=27.98 E-value=1e+02 Score=30.14 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.++.+.+..+.++||++|-|=|+.+.. +...|+.-+. +.+.|+.++++ .|-||-|+-+-+.
T Consensus 23 ~gi~~~LdyL~~LGv~~I~L~Pi~~~~-----~~~GY~~~dy~~idp~~Gt~~df~~lv~~aH~~--Gi~VilD~V~NH~ 95 (441)
T 1lwj_A 23 RGLKNAVSYLKELGIDFVWLMPVFSSI-----SFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDS--GIKVVLDLPIHHT 95 (441)
T ss_dssp HHHHHTHHHHHHTTCCEEEECCCEECS-----SSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECTTBC
T ss_pred HHHHHhhHHHHHcCCCEEEeCCCcCCC-----CCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEeCCCcc
Confidence 368889999999999999997753321 2344444332 24455555554 7999999987544
No 452
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=27.98 E-value=85 Score=27.54 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=44.7
Q ss_pred cceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHH
Q 014017 287 HVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLR 366 (432)
Q Consensus 287 ~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk 366 (432)
.++++.-..-..+.||..+.+.+..+- .+..|++.+.....+..+.......=++.+.|-|++=|...--+.+..++
T Consensus 21 ~Ig~i~~~~~~~~~~~~~~~~gi~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~ 97 (296)
T 3brq_A 21 TLGLVVTNTLYHGIYFSELLFHAARMA---EEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDII 97 (296)
T ss_dssp EEEEEECGGGCC--CHHHHHHHHHHHH---HHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHH
T ss_pred eEEEEeCCcccCCchHHHHHHHHHHHH---HHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHH
Confidence 455554321134567776666554432 23456654222222332222212222367999999887654345666665
Q ss_pred hhCCCCeEEEE
Q 014017 367 DKYPLPIAAYQ 377 (432)
Q Consensus 367 ~~~~lPvaaYq 377 (432)
+..++|+..+.
T Consensus 98 ~~~~iPvV~~~ 108 (296)
T 3brq_A 98 DAHSQPIMVLN 108 (296)
T ss_dssp HTCSSCEEEES
T ss_pred hcCCCCEEEEc
Confidence 53578887764
No 453
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=27.86 E-value=77 Score=29.07 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=50.8
Q ss_pred hccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhc-hhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEE
Q 014017 297 YASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD-ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 297 yASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~D-i~EGAD~lMVKPal~YLDII~~vk~~~~lPvaa 375 (432)
..+.||..+-+.+...- .+..|++-+.....+... ..+.... ++.+.|-|++=|...--+.+..+++ .++|+..
T Consensus 72 ~~~~~~~~~~~gi~~~a---~~~g~~~~~~~~~~~~~~-~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~-~~iPvV~ 146 (339)
T 3h5o_A 72 LANTVFLETLTGIETVL---DAAGYQMLIGNSHYDAGQ-ELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ-HALPVVY 146 (339)
T ss_dssp STTCTTHHHHHHHHHHH---HHTTCEEEEEECTTCHHH-HHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH-TTCCEEE
T ss_pred CCCHHHHHHHHHHHHHH---HHCCCEEEEEeCCCChHH-HHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc-CCCCEEE
Confidence 34567777666665432 345677752222223322 2222222 4689999999886544456666554 5788877
Q ss_pred EE---------e-----chhhHHHHHHHHCCC
Q 014017 376 YQ---------V-----SGEYSMIKAGGALKM 393 (432)
Q Consensus 376 Yq---------V-----SGEYaMikaAa~~G~ 393 (432)
+. | .|-|.+.++-.++|.
T Consensus 147 ~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~ 178 (339)
T 3h5o_A 147 MMDLADDGRCCVGFSQEDAGAAITRHLLSRGK 178 (339)
T ss_dssp EESCCSSSCCEEECCHHHHHHHHHHHHHHTTC
T ss_pred EeecCCCCCeEEEECHHHHHHHHHHHHHHCCC
Confidence 62 1 244555666566653
No 454
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=27.81 E-value=3.8e+02 Score=26.33 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHcCCCeEEE-eecCCCCCCC----cccC---cCcCCCC---CHHHHHHHHHHHC-CCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVL-FPKVPDALKS----PTGD---EAYNDNG---LVPRTIWLLKDRY-PDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd----~~gs---~A~n~~g---~v~raIr~iK~~f-Pdl~IitDVcLc~Y 224 (432)
+.+.+.++++++.|.+.+-+ +|..+ ...| +.|. ..++... ...+-++++++.+ ||+-|+.|.. +.|
T Consensus 135 e~~~~~a~~~~~~G~~~~K~KvG~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan-~~~ 212 (401)
T 3sbf_A 135 EGIYDLVEGFLEKGYKHIRCQLGFYG-GVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHDVH-ERL 212 (401)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESCCC-SCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTTSSEEEEECT-TCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC-cccccccccccccccccccchHHHHHHHHHHHHHHHHcCCCCEEEEECC-CCC
Confidence 36889999999999999998 44311 0111 0000 1111000 1245678888988 6899999975 345
Q ss_pred CCCC---------ccee--ecCCCccccHHHHHHHHH----------------HHHHHHHc-CCCeecCCCCCCchHHHH
Q 014017 225 SSDG---------HDGI--VREDGVIMNDETVHQLCK----------------QAVSQARA-GADVVSPSDMMDGRVGAI 276 (432)
Q Consensus 225 TshG---------HcGI--l~~~g~IdND~Tl~~Lak----------------~Avs~A~A-GADiVAPSDMMDGrV~aI 276 (432)
|..- ..|+ +.+.=.-+|-+.+..|.+ .+....+. ++|+|.|.=+--|=+...
T Consensus 213 ~~~~A~~~~~~L~~~~i~~iEqP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~ 292 (401)
T 3sbf_A 213 FPNQAIQFAKEVEQYKPYFIEDILPPNQTEWLDNIRSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGITPA 292 (401)
T ss_dssp CHHHHHHHHHHHGGGCCSCEECSSCTTCGGGHHHHHTTCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCChhHHHHHHHHHhhCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHHHH
Confidence 4100 0011 111111123333444433 33344444 489999987777767665
Q ss_pred HHHHHHCCCccceeecchh
Q 014017 277 RAALDAEGFQHVSIMSYTA 295 (432)
Q Consensus 277 R~aLD~~Gf~~v~ImSYSa 295 (432)
++..+-+--.++.+|.++.
T Consensus 293 ~kia~~A~~~gi~~~~h~~ 311 (401)
T 3sbf_A 293 LKLGHLCQNFGVRIAWHCA 311 (401)
T ss_dssp HHHHHHHHHHTCEECCCCC
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 5555433223456665543
No 455
>3ijd_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: C2F; 2.00A {Clostridium thermocellum atcc 27405}
Probab=27.59 E-value=1.4e+02 Score=29.38 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
++.+.++.+.+.||+.|+ =|-.|. +. ...+-...|+.++|+..++..|- |+.-|+ ||.
T Consensus 105 ei~~~L~~~~~~GI~niL-RGDpp~---~~------~~~~~~~~A~~l~~~~~~~F~IG--vA~yPe---~H~------- 162 (315)
T 3ijd_A 105 EFRRLTRPVSGQDAFSVF-VGAASR---NQ------SVLLKLSDAYKIRQDVNPDLLLG--GVAIPE---RHM------- 162 (315)
T ss_dssp HHHHHHSCCTTCCCEEEE-ECCCC-------------CCSCHHHHHHHHHHHCTTSEEE--EEECGG---GHH-------
T ss_pred HHHHHHHHHHHcCCcEEe-cCCCCC---CC------CCCcCHHHHHHHHHhcCCCEEEE--EEECCC---CCC-------
Confidence 577777788899999974 775332 22 12233677899988877775554 233343 561
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchH-HHHH----HHHHHCCCcccee
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRV-GAIR----AALDAEGFQHVSI 290 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV-~aIR----~aLD~~Gf~~v~I 290 (432)
..++| ++.|. .--+||||.+-.-=-.|-+. ...+ +...++|..+++|
T Consensus 163 ~~~~d--~~~Lk----~KvdAGAdf~ITQ~ffD~e~~~~f~~~~~~~~r~~Gi~~vPI 214 (315)
T 3ijd_A 163 KNTDE--HLRII----DKINKGCKYFITQAVYNVEAAKDFLSDYYYYSKNNNLKMVPI 214 (315)
T ss_dssp HHSCH--HHHHH----HHHHTTCCEEEESCCCCHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred CHHHH--HHHHH----HHHHCCCCEEEccccCCHHHHHHHHHHHHHHHHHCCCCCCcE
Confidence 11222 33333 34589999999988888443 3334 5556788755654
No 456
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.55 E-value=77 Score=31.00 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=32.7
Q ss_pred hcCCcEEEEcCC----------CchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCcc
Q 014017 344 SEGADILLVKPG----------LPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGAD 413 (432)
Q Consensus 344 ~EGAD~lMVKPa----------l~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd 413 (432)
+.|+|+|.+-.. ....| |..+++.+++||.+ | |..+.+. ...+..+|||
T Consensus 176 ~agad~i~i~~~~~~~~~~~~~~~~~~-i~~l~~~~~~pvi~----g-----------gi~t~e~-----a~~~~~~Gad 234 (393)
T 2qr6_A 176 KAGADLLVIQGTLISAEHVNTGGEALN-LKEFIGSLDVPVIA----G-----------GVNDYTT-----ALHMMRTGAV 234 (393)
T ss_dssp HTTCSEEEEECSSCCSSCCCC-----C-HHHHHHHCSSCEEE----E-----------CCCSHHH-----HHHHHTTTCS
T ss_pred HCCCCEEEEeCCccccccCCCcccHHH-HHHHHHhcCCCEEE----C-----------CcCCHHH-----HHHHHHcCCC
Confidence 358998876421 23455 67888889999987 2 4445432 2344568999
Q ss_pred Eeeh
Q 014017 414 IILT 417 (432)
Q Consensus 414 ~IiT 417 (432)
.|+.
T Consensus 235 ~i~v 238 (393)
T 2qr6_A 235 GIIV 238 (393)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8864
No 457
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=27.52 E-value=1.5e+02 Score=28.06 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCC--eEEEeeecccCCCCCCcceeecC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD--LVIYTDVALDPYSSDGHDGIVRE 235 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPd--l~IitDVcLc~YTshGHcGIl~~ 235 (432)
.-+.|++++++.|-..|-+.-.+. ..|+ |. | ..+.+=|+.+++..++ |-|| + |
T Consensus 96 ~Kv~Ea~~Ai~~GAdEIDmViNig-~lk~--g~--~---~~v~~eI~~v~~a~~~~~lKVI----------------l-E 150 (239)
T 3ngj_A 96 VKAYETKVAVEQGAEEVDMVINIG-MVKA--KK--Y---DDVEKDVKAVVDASGKALTKVI----------------I-E 150 (239)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCHH-HHHT--TC--H---HHHHHHHHHHHHHHTTSEEEEE----------------C-C
T ss_pred HHHHHHHHHHHcCCCEEEEEeehH-Hhcc--cc--H---HHHHHHHHHHHHHhcCCceEEE----------------E-e
Confidence 357899999999999998853332 2331 22 2 3477888999888654 2233 2 4
Q ss_pred CCccccHHHHHHHHHHHHHHHHcCCCeecCC-CCCCc
Q 014017 236 DGVIMNDETVHQLCKQAVSQARAGADVVSPS-DMMDG 271 (432)
Q Consensus 236 ~g~IdND~Tl~~Lak~Avs~A~AGADiVAPS-DMMDG 271 (432)
.|.+ +|+.+..+|+.|. ++|||+|=.| +---|
T Consensus 151 t~~L-t~eei~~a~~ia~---~aGADfVKTSTGf~~g 183 (239)
T 3ngj_A 151 CCYL-TNEEKVEVCKRCV---AAGAEYVKTSTGFGTH 183 (239)
T ss_dssp GGGS-CHHHHHHHHHHHH---HHTCSEEECCCSSSSC
T ss_pred cCCC-CHHHHHHHHHHHH---HHCcCEEECCCCCCCC
Confidence 4554 5666777777765 7999999999 44333
No 458
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=27.52 E-value=91 Score=31.82 Aligned_cols=62 Identities=21% Similarity=0.450 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCC---------CH---HHHHHHHHHHCCCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNG---------LV---PRTIWLLKDRYPDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g---------~v---~raIr~iK~~fPdl~IitDVcLc~Y 224 (432)
.++.+.+.-+.++||++|-|-|+.+. +..+..|+.-+ -. .+-|+.++++ .|-||-|+-+-+.
T Consensus 32 ~gi~~~Ldyl~~LGv~~I~L~Pi~~~----~~~~~GYd~~dy~~idp~~Gt~~df~~Lv~~aH~~--Gi~VilD~V~NHt 105 (557)
T 1zja_A 32 KGLTEKLDYLKGLGIDAIWINPHYAS----PNTDNGYDISDYREVMKEYGTMEDFDRLMAELKKR--GMRLMVDVVINHS 105 (557)
T ss_dssp HHHHHTHHHHHHHTCCEEEECCCEEC----CCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHT--TCEEEEEECCSBC
T ss_pred HHHHHHHHHHHHcCCCEEEECCCccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEecccc
Confidence 36888899999999999999876332 11223444332 22 3444444444 7999999987553
No 459
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=27.43 E-value=32 Score=36.16 Aligned_cols=55 Identities=33% Similarity=0.416 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCeec---------CCCCCCc--------------hHHHHHHHHHHCCCccceeecchhhhccccchh
Q 014017 249 CKQAVSQARAGADVVS---------PSDMMDG--------------RVGAIRAALDAEGFQHVSIMSYTAKYASSFYGP 304 (432)
Q Consensus 249 ak~Avs~A~AGADiVA---------PSDMMDG--------------rV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGP 304 (432)
..||..-|+.|||+|+ -....-| .+.+.|+|||+.+ ..|+=-=.-..|+|.+-+|
T Consensus 166 i~qa~aAA~~GAD~IaVIRttgQSllDyvp~GaT~eG~GGt~aTqenfR~mRkALD~v~-~evgRyI~~~nY~SGlcmP 243 (516)
T 1xrs_A 166 ITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGATTEGFGGTYATQENFRLMREALDKVG-AEVGKYIRLCNYCSGLCMP 243 (516)
T ss_dssp HHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSCCSCCTTSCCCCHHHHHHHHHHHHHHH-HHHTSCCEEEEECCSTTHH
T ss_pred HHHHHHHHHcCCCEEEEecccchhhhcccCCCCCCCCcCCchhhHHHHHHHHHHHHHHH-HHhCCeeeeeccccccccH
No 460
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=27.40 E-value=1.1e+02 Score=30.56 Aligned_cols=194 Identities=10% Similarity=0.102 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeec-----------CCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPK-----------VPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSS 226 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgv-----------i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTs 226 (432)
...+.++.+.+.|...|-|-+- ..+.-.|+.|-.--|.--++.+.|+.+|+++++--|...+....+.
T Consensus 172 ~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~- 250 (402)
T 2hsa_B 172 DYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDH- 250 (402)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCS-
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEecccccc-
Confidence 4556667778999999999652 1223467766554344445678899999998732566666654431
Q ss_pred CCcceeecCCCccccHHHHHHHHHHHHHHHHcC------CCeecCCCCCCchHHHHHHHHHHCCCcccee--ecchhhhc
Q 014017 227 DGHDGIVREDGVIMNDETVHQLCKQAVSQARAG------ADVVSPSDMMDGRVGAIRAALDAEGFQHVSI--MSYTAKYA 298 (432)
Q Consensus 227 hGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AG------ADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~I--mSYSaKyA 298 (432)
. |+- ...+++...+.|-.+.++| +|.|.-|.-+- + ++...+. ++.... .
T Consensus 251 ~---g~~-------~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~----------~--~~~~~~~~~~~~~~~-~ 307 (402)
T 2hsa_B 251 L---DAM-------DSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRY----------V--AYGQTEAGRLGSEEE-E 307 (402)
T ss_dssp T---TCC-------CSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCC----------C--TTTTSSSTTTTHHHH-H
T ss_pred C---CCC-------CCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCcc----------c--cccCCccccccCCcc-h
Confidence 1 111 1124445555666677888 99887765220 0 0000010 000000 0
Q ss_pred cccchhhhhhhhCCCCC--CCcccccccccCCCCCHHHHHHHHHhchhcC-CcEEEE-cCCCchhHHHHHHHhhCCCCeE
Q 014017 299 SSFYGPFREALDSNPRF--GDKKTYVIRVIELYANYREALVEAQADESEG-ADILLV-KPGLPYLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 299 SsfYGPFRdAa~Sap~~--gDRktYQmd~~~~p~N~~EAlre~~~Di~EG-AD~lMV-KPal~YLDII~~vk~~~~lPva 374 (432)
-.|-.-+|++++ -|-. |+ . +.++| .++ +++| ||+||+ .|.+..-|+++++++.. |+.
T Consensus 308 ~~~~~~vk~~~~-iPvi~~G~-----------i-~~~~a-~~~---l~~g~aD~V~igR~~l~dP~l~~k~~~g~--~l~ 368 (402)
T 2hsa_B 308 ARLMRTLRNAYQ-GTFICSGG-----------Y-TRELG-IEA---VAQGDADLVSYGRLFISNPDLVMRIKLNA--PLN 368 (402)
T ss_dssp HHHHHHHHHHCS-SCEEEESS-----------C-CHHHH-HHH---HHTTSCSEEEESHHHHHCTTHHHHHHHTC--CCC
T ss_pred HHHHHHHHHHCC-CCEEEeCC-----------C-CHHHH-HHH---HHCCCCceeeecHHHHhCchHHHHHHhCC--CCC
Confidence 112223444442 2322 21 1 22333 222 4456 999998 57777789999998754 444
Q ss_pred EEEechhhHHHHHHHHCCCchhh
Q 014017 375 AYQVSGEYSMIKAGGALKMIDEQ 397 (432)
Q Consensus 375 aYqVSGEYaMikaAa~~G~id~~ 397 (432)
.|.-+-=|. .....|+.|..
T Consensus 369 ~~~~~tfy~---~~~~~Gy~dyp 388 (402)
T 2hsa_B 369 KYNRKTFYT---QDPVVGYTDYP 388 (402)
T ss_dssp CCCGGGSSC---CCSSTTTTCSC
T ss_pred CCChhhccc---CCCCCCcccCc
Confidence 444332220 01235777763
No 461
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=27.38 E-value=45 Score=30.50 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEcCCCch-----hHHHHHHHhhC-CCCeEE---EEechhhHHHHHHHHCCC-c----
Q 014017 329 YANYREALVEAQADESEGADILLVKPGLPY-----LDVIRLLRDKY-PLPIAA---YQVSGEYSMIKAGGALKM-I---- 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVKPal~Y-----LDII~~vk~~~-~lPvaa---YqVSGEYaMikaAa~~G~-i---- 394 (432)
..|.+||++-+.. +...+| ++|.++.. +++|+.+|+.+ +.+++. .+--|+. +.+++++.|. +
T Consensus 14 ~~~~~~a~~~~~~-~~~~~~--~ikvg~~lf~~~G~~~v~~l~~~~p~~~iflDlKl~Dip~t-~~~~~~~~Gad~vtVH 89 (221)
T 3exr_A 14 HSNLKGAITAAVS-VGNEVD--VIEAGTVCLLQVGSELVEVLRSLFPDKIIVADTKCADAGGT-VAKNNAVRGADWMTCI 89 (221)
T ss_dssp CSSHHHHHHHHHH-HGGGCS--EEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHH-HHHHHHTTTCSEEEEE
T ss_pred CCCHHHHHHHHHh-hCCCce--EEEECHHHHHhcCHHHHHHHHHhCCCCcEEEEEEeeccHHH-HHHHHHHcCCCEEEEe
Confidence 7889999877764 444444 56777543 79999999986 566665 3344544 2344566652 1
Q ss_pred --hhhHHHHHHHHHHHHcC
Q 014017 395 --DEQRVMMESLMCLRRAG 411 (432)
Q Consensus 395 --d~~~~~~EsL~~ikRAG 411 (432)
-..+.+-+.+..++..|
T Consensus 90 ~~~g~~~l~~a~~~~~~~g 108 (221)
T 3exr_A 90 CSATIPTMKAARKAIEDIN 108 (221)
T ss_dssp TTSCHHHHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHhcC
Confidence 11344555556666555
No 462
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=27.34 E-value=1.3e+02 Score=28.42 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHHHHhchhcCCcEEEE-cC------------CCchhHHHHHHHhhCCCCeEE
Q 014017 333 REALVEAQADESEGADILLV-KP------------GLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 333 ~EAlre~~~Di~EGAD~lMV-KP------------al~YLDII~~vk~~~~lPvaa 375 (432)
.|..+.+. +.|||.|++ =| -+..+++|+++++.+++|+.+
T Consensus 31 ~~~a~~~~---~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~ 83 (305)
T 2nv1_A 31 AEQAKIAE---EAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMA 83 (305)
T ss_dssp HHHHHHHH---HTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHH---HcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEe
Confidence 34444443 479999953 11 123689999999999999874
No 463
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=27.33 E-value=1e+02 Score=28.79 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=22.9
Q ss_pred hcCCcEEEE-cC------CCchhHHHHHHHhhCCCCeEE
Q 014017 344 SEGADILLV-KP------GLPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 344 ~EGAD~lMV-KP------al~YLDII~~vk~~~~lPvaa 375 (432)
+.|+|+|+. .+ +..-.+.|+.+++..++||.+
T Consensus 145 ~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv 183 (264)
T 1xm3_A 145 ELGVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIV 183 (264)
T ss_dssp HHTCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEE
T ss_pred HhCCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 468888866 11 122378899999988999976
No 464
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=27.31 E-value=1.3e+02 Score=29.06 Aligned_cols=62 Identities=18% Similarity=0.130 Sum_probs=41.7
Q ss_pred HHHhchhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCc-hhhHHHHHHHHHHHHcCccEee
Q 014017 338 EAQADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI-DEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 338 e~~~Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i-d~~~~~~EsL~~ikRAGAd~Ii 416 (432)
.+..=.+-|||+|=+++- -|-++++.+..++||.+ +| |.- + ++-++|.+....++||+.++
T Consensus 194 aariA~elGAD~VKt~~t---~e~~~~vv~~~~vPVv~---~G-----------G~~~~-~~~~l~~v~~ai~aGA~Gv~ 255 (295)
T 3glc_A 194 ATRIAAEMGAQIIKTYYV---EKGFERIVAGCPVPIVI---AG-----------GKKLP-EREALEMCWQAIDQGASGVD 255 (295)
T ss_dssp HHHHHHHTTCSEEEEECC---TTTHHHHHHTCSSCEEE---EC-----------CSCCC-HHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHhCCCEEEeCCC---HHHHHHHHHhCCCcEEE---EE-----------CCCCC-HHHHHHHHHHHHHhCCeEEE
Confidence 344445789999888853 26678888888999873 33 211 3 34557777777788888766
Q ss_pred h
Q 014017 417 T 417 (432)
Q Consensus 417 T 417 (432)
.
T Consensus 256 v 256 (295)
T 3glc_A 256 M 256 (295)
T ss_dssp E
T ss_pred e
Confidence 4
No 465
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=27.27 E-value=16 Score=35.60 Aligned_cols=122 Identities=12% Similarity=0.003 Sum_probs=68.2
Q ss_pred HHHHHHHcCCCeEEEeecCCCC-CCCcccCcCcCCC---CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCC
Q 014017 162 EVAKARDVGVNSVVLFPKVPDA-LKSPTGDEAYNDN---GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDG 237 (432)
Q Consensus 162 ~v~~~~~~GI~sv~LFgvi~~~-~Kd~~gs~A~n~~---g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g 237 (432)
.++.+.+.|+..|-+|...++. .+...+. +.+ .-+.++++.+|+..-+ |..++.-|+|. +
T Consensus 101 ~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~---s~~e~l~~~~~~v~~ak~~G~~--v~~~~~~~~~~-----------~ 164 (337)
T 3ble_A 101 TVDWIKDSGAKVLNLLTKGSLHHLEKQLGK---TPKEFFTDVSFVIEYAIKSGLK--INVYLEDWSNG-----------F 164 (337)
T ss_dssp HHHHHHHHTCCEEEEEEECSHHHHHHHTCC---CHHHHHHHHHHHHHHHHHTTCE--EEEEEETHHHH-----------H
T ss_pred hHHHHHHCCCCEEEEEEecCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHCCCE--EEEEEEECCCC-----------C
Confidence 7888999999999999864431 1111111 111 1234566666776433 33332222221 1
Q ss_pred ccccHHHHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH--CCC--ccceeecchhhhccccch
Q 014017 238 VIMNDETVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA--EGF--QHVSIMSYTAKYASSFYG 303 (432)
Q Consensus 238 ~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~--~Gf--~~v~ImSYSaKyASsfYG 303 (432)
..+.+.+.+.+-...++|||.|.-.|+.= -.|.++|+.+.. -|| +|+.=|+.+.-.+.--.|
T Consensus 165 ----~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aG 238 (337)
T 3ble_A 165 ----RNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAG 238 (337)
T ss_dssp ----HHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTT
T ss_pred ----cCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhC
Confidence 23466777777788899999999999753 245666666511 121 455555555444444444
No 466
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=27.14 E-value=45 Score=28.15 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCeecCCCCCCchHH---HHHHHHHHCCCccceee
Q 014017 242 DETVHQLCKQAVSQARAGADVVSPSDMMDGRVG---AIRAALDAEGFQHVSIM 291 (432)
Q Consensus 242 D~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~---aIR~aLD~~Gf~~v~Im 291 (432)
+.+.+.+.+.|..+ ++|+|+-|.+|..... .+.+.|.+.|..++.||
T Consensus 40 ~~p~e~~v~~a~~~---~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~ 89 (137)
T 1ccw_A 40 LSPQELFIKAAIET---KADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY 89 (137)
T ss_dssp EECHHHHHHHHHHH---TCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEE
T ss_pred CCCHHHHHHHHHhc---CCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEE
Confidence 67777777777654 8999999999986654 45667888888677664
No 467
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum}
Probab=27.14 E-value=1.2e+02 Score=29.80 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccC--cCcCCCCC------------HHHHHHHHHHHCCCeEEEeeeccc
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGD--EAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALD 222 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs--~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc 222 (432)
.++.+.+..+.++|+++|-|=|+.+....+..|. +.|++-+. +.+.++.++++ .|-||.|+-+-
T Consensus 30 ~~i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~~~~~~~gY~~~dy~~i~~~~Gt~~~~~~lv~~~h~~--Gi~vi~D~V~N 107 (449)
T 3dhu_A 30 AGVTADLQRIKDLGTDILWLLPINPIGEVNRKGTLGSPYAIKDYRGINPEYGTLADFKALTDRAHEL--GMKVMLDIVYN 107 (449)
T ss_dssp HHHHTTHHHHHHHTCSEEEECCCSCBCSTTCCTTTCCTTSBSCTTSCCGGGCCHHHHHHHHHHHHHT--TCEEEEEECCS
T ss_pred HHHHHhHHHHHHcCCCEEEECCcccccccCCCCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEccC
Confidence 3688899999999999999988643322222222 23554444 23455555554 79999999874
Q ss_pred CCCCCCc-----ceee--cCCC---------------ccccHHHHHHHHHHHHHHHHcCCCee---cCCCCCCchHHHHH
Q 014017 223 PYSSDGH-----DGIV--REDG---------------VIMNDETVHQLCKQAVSQARAGADVV---SPSDMMDGRVGAIR 277 (432)
Q Consensus 223 ~YTshGH-----cGIl--~~~g---------------~IdND~Tl~~Lak~Avs~A~AGADiV---APSDMMDGrV~aIR 277 (432)
.-+...+ .+.. ..+| .-.|.+..+.+.+...-..+. +|-+ +..-|-..-+..+|
T Consensus 108 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~dLn~~np~Vr~~l~~~l~~w~~~-vDGfRlDaa~~~~~~f~~~~~ 186 (449)
T 3dhu_A 108 HTSPDSVLATEHPEWFYHDADGQLTNKVGDWSDVKDLDYGHHELWQYQIDTLLYWSQF-VDGYRCDVAPLVPLDFWLEAR 186 (449)
T ss_dssp EECTTSHHHHHCGGGBCBCTTSCBCCSSTTCTTCEEBCTTSHHHHHHHHHHHHHHTTT-CSEEEETTGGGSCHHHHHHHH
T ss_pred cCcCccchhhcCccceEECCCCCcCCCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHh-CCEEEEEChhhCCHHHHHHHH
Confidence 4332110 0000 1111 124677777777777767666 5533 22233334567788
Q ss_pred HHHHHC
Q 014017 278 AALDAE 283 (432)
Q Consensus 278 ~aLD~~ 283 (432)
+.+.+.
T Consensus 187 ~~~~~~ 192 (449)
T 3dhu_A 187 KQVNAK 192 (449)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 888654
No 468
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=27.11 E-value=78 Score=29.73 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=48.4
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHH---HHHHHHHHHCCCeEEEeeecc---cCCCCCCcceee
Q 014017 160 VQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVP---RTIWLLKDRYPDLVIYTDVAL---DPYSSDGHDGIV 233 (432)
Q Consensus 160 ~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~---raIr~iK~~fPdl~IitDVcL---c~YTshGHcGIl 233 (432)
.+.++.+.+.|++.|.+|...++. -+.. .-..+.+..+. ++++..|+.. +-|-+.++. |||
T Consensus 82 ~~~i~~a~~~G~~~V~i~~~~S~~-h~~~-~~~~~~~e~~~~~~~~v~~a~~~G--~~V~~~l~~~~~~e~--------- 148 (295)
T 1ydn_A 82 MKGYEAAAAAHADEIAVFISASEG-FSKA-NINCTIAESIERLSPVIGAAINDG--LAIRGYVSCVVECPY--------- 148 (295)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHH-HHHH-HTSSCHHHHHHHHHHHHHHHHHTT--CEEEEEEECSSEETT---------
T ss_pred HHHHHHHHHCCCCEEEEEEecCHH-HHHH-HcCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEEEEecCCc---------
Confidence 356778999999999998643210 0000 00011222333 4466666653 445545542 233
Q ss_pred cCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC
Q 014017 234 REDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM 269 (432)
Q Consensus 234 ~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM 269 (432)
+.-.|.+ .+.+.+-...++|||.|+-.|+.
T Consensus 149 ---~~~~~~~---~~~~~~~~~~~~G~d~i~l~Dt~ 178 (295)
T 1ydn_A 149 ---DGPVTPQ---AVASVTEQLFSLGCHEVSLGDTI 178 (295)
T ss_dssp ---TEECCHH---HHHHHHHHHHHHTCSEEEEEETT
T ss_pred ---CCCCCHH---HHHHHHHHHHhcCCCEEEecCCC
Confidence 1122333 44444444557899999988753
No 469
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=27.00 E-value=44 Score=28.12 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+.... +...|+|++= |++.-+++++.+++.. .+|+....-.++...+..|.+.|..|
T Consensus 34 ~~~~~~al~~~~---~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~~ 101 (208)
T 1yio_A 34 FDCASTFLEHRR---PEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIE 101 (208)
T ss_dssp ESSHHHHHHHCC---TTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCCCHHHHHTTEEE
T ss_pred cCCHHHHHHhhh---ccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHCCCcE
Confidence 456677765442 2457888875 6666789999999865 69999998887777777777888654
No 470
>3cwn_A Transaldolase B; directed evolution, cytoplasm, pentose shunt, transferase; 1.40A {Escherichia coli} PDB: 3kof_A 1ucw_A* 1onr_A 1i2r_A 1i2q_A 1i2o_A 1i2p_A 1i2n_A
Probab=26.61 E-value=64 Score=32.01 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCeecCCCCCCchH
Q 014017 249 CKQAVSQARAGADVVSPSDMMDGRV 273 (432)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGrV 273 (432)
..||+.-|+|||.+|+| +=|||
T Consensus 181 ~~Qa~aaa~AGa~~iSp---FVgRi 202 (337)
T 3cwn_A 181 FAQARACAEAGVFLISP---YVGRI 202 (337)
T ss_dssp HHHHHHHHHTTCSEEEE---BSHHH
T ss_pred HHHHHHHHHcCCcEEEe---echhh
Confidence 56999999999999999 66666
No 471
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=26.48 E-value=1.4e+02 Score=28.70 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhchhcCCcEEEEcC---C-----CchhHHHHHHHhhCCCCeEE
Q 014017 331 NYREALVEAQADESEGADILLVKP---G-----LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 331 N~~EAlre~~~Di~EGAD~lMVKP---a-----l~YLDII~~vk~~~~lPvaa 375 (432)
+.++|.+. ++.|+|.|.|-. + .+-++++.++++..++||.+
T Consensus 133 s~~~a~~a----~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPvia 181 (326)
T 3bo9_A 133 SDSLARMV----ERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIA 181 (326)
T ss_dssp SHHHHHHH----HHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEE
T ss_pred CHHHHHHH----HHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEE
Confidence 44555432 357999999954 1 24578999999989999865
No 472
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=26.46 E-value=1e+02 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=22.5
Q ss_pred hcCCcEEEE--------------cC----------CCchhHHHHHHHhhC-CCCeEE
Q 014017 344 SEGADILLV--------------KP----------GLPYLDVIRLLRDKY-PLPIAA 375 (432)
Q Consensus 344 ~EGAD~lMV--------------KP----------al~YLDII~~vk~~~-~lPvaa 375 (432)
+-|||.|.| ++ +.+-.+.|+++++.. ++||.+
T Consensus 200 ~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia 256 (349)
T 1p0k_A 200 EAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIA 256 (349)
T ss_dssp HHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEE
T ss_pred HcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEE
Confidence 569999999 43 345577788888776 688765
No 473
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=26.43 E-value=64 Score=31.39 Aligned_cols=184 Identities=12% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHcCCCeEEEeecCCCC-CCCccc-CcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHH
Q 014017 166 ARDVGVNSVVLFPKVPDA-LKSPTG-DEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDE 243 (432)
Q Consensus 166 ~~~~GI~sv~LFgvi~~~-~Kd~~g-s~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~ 243 (432)
+...|+..|-+|...++. .+-..+ +....- ..+.++++..|+..-++ . .-||| .+..
T Consensus 90 l~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l-~~~~~~v~~a~~~g~~v--~---f~~~d-----------~~~~---- 148 (325)
T 3eeg_A 90 LRFAKRSRIHTGIGSSDIHIEHKLRSTRENIL-EMAVAAVKQAKKVVHEV--E---FFCED-----------AGRA---- 148 (325)
T ss_dssp HTTCSSEEEEEEEECSHHHHC----CCCTTGG-GTTHHHHHHHHTTSSEE--E---EEEET-----------GGGS----
T ss_pred hcccCCCEEEEEecccHHHHHHHhCCCHHHHH-HHHHHHHHHHHHCCCEE--E---EEccc-----------cccc----
Confidence 334499999999865532 111111 111111 22346788888764322 1 12343 1222
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCC--------chHHHHHHHHHH-----CC--Cccceeecchhhhccccchhhhhh
Q 014017 244 TVHQLCKQAVSQARAGADVVSPSDMMD--------GRVGAIRAALDA-----EG--FQHVSIMSYTAKYASSFYGPFREA 308 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPSDMMD--------GrV~aIR~aLD~-----~G--f~~v~ImSYSaKyASsfYGPFRdA 308 (432)
+.+.+.+.+-...++|||.|+-.||.= -.|.++|+.+.. -+ ++|+.=|+.+.-.+.--.|- +.
T Consensus 149 ~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa--~~ 226 (325)
T 3eeg_A 149 DQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGA--RQ 226 (325)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTC--CE
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCC--CE
Confidence 345666666667788999999999864 245566665542 11 14555577766555555552 22
Q ss_pred hhCCCC-CCCcccccccccCCCCCHHHHHHHHHh------chhcCCcEEEEcCCCchhHHHHHHHhhCCCCeEEEE-ech
Q 014017 309 LDSNPR-FGDKKTYVIRVIELYANYREALVEAQA------DESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQ-VSG 380 (432)
Q Consensus 309 a~Sap~-~gDRktYQmd~~~~p~N~~EAlre~~~------Di~EGAD~lMVKPal~YLDII~~vk~~~~lPvaaYq-VSG 380 (432)
++++-. +|.| +=+.+ -|.+..... .++-|-|. ....++-+.+.+..+.|+-..+ +-|
T Consensus 227 vd~tv~GlGer-~GN~~--------lE~vv~~L~~~~~~~g~~tgidl------~~L~~~s~~v~~~~g~~~~~~~p~vG 291 (325)
T 3eeg_A 227 VECTINGIGER-AGNTA--------LEEVVMAMECHKETLGLETGINH------KKLVPISHLVSTLMRMQVQSNKAIVG 291 (325)
T ss_dssp EEEBGGGCCST-TCCCB--------HHHHHHHHHHTHHHHCEECCCCG------GGHHHHHHHHHHHTTC----------
T ss_pred EEEeccccccc-ccchh--------HHHHHHHHHhhhhccCCCCCcCH------HHHHHHHHHHHHHhCCCCCCCCCccc
Confidence 333322 4543 44443 344444433 23334332 1235555666677777765443 567
Q ss_pred hhHHHHH
Q 014017 381 EYSMIKA 387 (432)
Q Consensus 381 EYaMika 387 (432)
+.+-.+.
T Consensus 292 ~~af~h~ 298 (325)
T 3eeg_A 292 RNAFAHS 298 (325)
T ss_dssp -------
T ss_pred hhHHHHh
Confidence 7665543
No 474
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=26.42 E-value=1.3e+02 Score=22.26 Aligned_cols=52 Identities=25% Similarity=0.319 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC-CCCeEEEEechhhH
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY-PLPIAAYQVSGEYS 383 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~-~lPvaaYqVSGEYa 383 (432)
..|..||+..... +..|++++= |++.-+++++.+++.. .+|+....-.+++.
T Consensus 31 ~~~~~~a~~~~~~---~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~ 86 (116)
T 3a10_A 31 AENGEEALKKFFS---GNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR 86 (116)
T ss_dssp ESSHHHHHHHHHH---SCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG
T ss_pred eCCHHHHHHHHhc---CCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH
Confidence 4577888876643 457999886 5555688999999865 58998876655543
No 475
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=26.42 E-value=2.1e+02 Score=27.43 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=47.9
Q ss_pred hhcCCcEEEEcCCCch----------------------------hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCc
Q 014017 343 ESEGADILLVKPGLPY----------------------------LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMI 394 (432)
Q Consensus 343 i~EGAD~lMVKPal~Y----------------------------LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~i 394 (432)
++.|.|.|=+..+--| ++||+.+|+..+.||+.=--..+|. ..||
T Consensus 154 ~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~------~~g~- 226 (338)
T 1z41_A 154 KEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYT------DKGL- 226 (338)
T ss_dssp HHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCS------TTSC-
T ss_pred HHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccC------CCCC-
Confidence 3579999999877533 7899999998899987643333431 1365
Q ss_pred hhhHHHHHHHHHHHHcCccEee
Q 014017 395 DEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+ -..|....+..+|+|+|-
T Consensus 227 ~~~-~~~~~a~~l~~~Gvd~i~ 247 (338)
T 1z41_A 227 DIA-DHIGFAKWMKEQGVDLID 247 (338)
T ss_dssp CHH-HHHHHHHHHHHTTCCEEE
T ss_pred CHH-HHHHHHHHHHHcCCCEEE
Confidence 333 357888888999999986
No 476
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=26.42 E-value=50 Score=29.67 Aligned_cols=59 Identities=22% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCCCCCcccccccccCCCCCHHHHHHHHHhchhc-CCcEEEEcCCCchhHHHHHHHhhCCCCe
Q 014017 311 SNPRFGDKKTYVIRVIELYANYREALVEAQADESE-GADILLVKPGLPYLDVIRLLRDKYPLPI 373 (432)
Q Consensus 311 Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~E-GAD~lMVKPal~YLDII~~vk~~~~lPv 373 (432)
|.|.|.||..||.+ . ..+..+.+.++..-+++ |+|+|++==...- =.+..+++.+++|+
T Consensus 41 ~~~~i~~r~~~~~~--~-~~~~~~~l~~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPv 100 (228)
T 1jfl_A 41 NNPQIPDRTAYILG--K-GEDPRPQLIWTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPI 100 (228)
T ss_dssp ECTTSCCHHHHHTT--S-SCCCHHHHHHHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCB
T ss_pred eCCCHHHHHHHHHc--C-CchHHHHHHHHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCE
No 477
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.33 E-value=1.3e+02 Score=26.78 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEE--------cCCC---chhHHHHHHHhh--CCCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLV--------KPGL---PYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMV--------KPal---~YLDII~~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..|+. ++ . .|||.|.+ ||+. .=++.++.+++. .++|+.+ .|-|+
T Consensus 95 ~~t~~e~~-~A---~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPvia---------------iGGI~ 154 (210)
T 3ceu_A 95 CHSVEEVK-NR---K-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMA---------------LGGIN 154 (210)
T ss_dssp ECSHHHHH-TT---G-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEE---------------ESSCC
T ss_pred cCCHHHHH-HH---h-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEE---------------ECCCC
Confidence 34666753 33 2 69999984 5442 236888998887 6899976 46667
Q ss_pred hhHHHHHHHHHHHHcCccEe
Q 014017 396 EQRVMMESLMCLRRAGADII 415 (432)
Q Consensus 396 ~~~~~~EsL~~ikRAGAd~I 415 (432)
.+++ ..+.++||+.|
T Consensus 155 ~~nv-----~~~~~~Ga~gV 169 (210)
T 3ceu_A 155 EDNL-----LEIKDFGFGGA 169 (210)
T ss_dssp TTTH-----HHHHHTTCSEE
T ss_pred HHHH-----HHHHHhCCCEE
Confidence 5532 33446888876
No 478
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=26.26 E-value=49 Score=31.07 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCC
Q 014017 249 CKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 249 ak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf 285 (432)
+.+|+..|+-|+++..=+-.-|. .+.|++.|.++|.
T Consensus 61 ~NvA~~la~LG~~~~~i~~vG~D-~g~i~~~L~~~gV 96 (334)
T 2pkf_A 61 GNMAFAIGVLGGEVALVGAAGAD-FADYRDWLKARGV 96 (334)
T ss_dssp HHHHHHHHHTTCEEEEECEECGG-GHHHHHHHHTTTE
T ss_pred HHHHHHHHHcCCCeEEEEEEeCc-hHHHHHHHHHCCC
Confidence 56899999999987665544443 2339999999997
No 479
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=26.12 E-value=1.5e+02 Score=28.56 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhCCCCeEEEEechhh--HHHHHHHHCCCch
Q 014017 328 LYANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKYPLPIAAYQVSGEY--SMIKAGGALKMID 395 (432)
Q Consensus 328 ~p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~~lPvaaYqVSGEY--aMikaAa~~G~id 395 (432)
...|..||+..+.. .--|+|++= |.+.=+++++.+++..++|+....-..+. .....+.+.|..|
T Consensus 34 ~a~~~~eAl~~l~~---~~pDlVllDi~mp~~dGlell~~l~~~~p~pVIvlS~~~~~~~~~~~~al~~Ga~d 103 (349)
T 1a2o_A 34 TAPDPLVARDLIKK---FNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAID 103 (349)
T ss_dssp EESSHHHHHHHHHH---HCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEEEEECCTHHHHHHHHHHHHHTCCE
T ss_pred EeCCHHHHHHHHhc---cCCCEEEEECCCCCCCHHHHHHHHHhcCCCcEEEEECCCcccHHHHHHHHhCCceE
Confidence 36788898877653 357999875 66667899999999888999988766654 3456666777654
No 480
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=26.02 E-value=83 Score=28.98 Aligned_cols=163 Identities=22% Similarity=0.299 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHcCCCeEEE-e--ec-CCCCCCCcccCcCcCCCCCHHHHHHHHHHHC-CCeEEEeeecccCCCCCCccee
Q 014017 158 GLVQEVAKARDVGVNSVVL-F--PK-VPDALKSPTGDEAYNDNGLVPRTIWLLKDRY-PDLVIYTDVALDPYSSDGHDGI 232 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~L-F--gv-i~~~~Kd~~gs~A~n~~g~v~raIr~iK~~f-Pdl~IitDVcLc~YTshGHcGI 232 (432)
.|.++++.+.+.|+..+-+ . |. +|+- .+=...++.||+.+ |++.+-+++-.
T Consensus 18 ~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~-------------~~G~~~v~~ir~~~~~~~~~dvhLmv----------- 73 (228)
T 3ovp_A 18 NLGAECLRMLDSGADYLHLDVMDGHFVPNI-------------TFGHPVVESLRKQLGQDPFFDMHMMV----------- 73 (228)
T ss_dssp GHHHHHHHHHHTTCSCEEEEEEBSSSSSCB-------------CBCHHHHHHHHHHHCSSSCEEEEEEC-----------
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCCcCccc-------------ccCHHHHHHHHHhhCCCCcEEEEEEe-----------
Confidence 4889999999999986555 0 10 2321 12245888888887 77655333221
Q ss_pred ecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCC
Q 014017 233 VREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSN 312 (432)
Q Consensus 233 l~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sa 312 (432)
. |- +...+ .++++|||+|.--.--.-.+...-+.+.+.|. +++|.
T Consensus 74 -~------~p---~~~i~---~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~-k~gva--------------------- 118 (228)
T 3ovp_A 74 -S------KP---EQWVK---PMAVAGANQYTFHLEATENPGALIKDIRENGM-KVGLA--------------------- 118 (228)
T ss_dssp -S------CG---GGGHH---HHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTC-EEEEE---------------------
T ss_pred -C------CH---HHHHH---HHHHcCCCEEEEccCCchhHHHHHHHHHHcCC-CEEEE---------------------
Confidence 1 10 11222 35789999986432111123333334445564 22211
Q ss_pred CCCCCcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCC-------chhHHHHHHHhhC-CCCeEEEEechh
Q 014017 313 PRFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGL-------PYLDVIRLLRDKY-PLPIAAYQVSGE 381 (432)
Q Consensus 313 p~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal-------~YLDII~~vk~~~-~lPvaaYqVSGE 381 (432)
++ |...-|.+. .+.+..|+|++ -|+. .-++-|+++|+.. ++|+ +|
T Consensus 119 ----------l~----p~t~~e~l~----~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I---~V--- 174 (228)
T 3ovp_A 119 ----------IK----PGTSVEYLA----PWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI---EV--- 174 (228)
T ss_dssp ----------EC----TTSCGGGTG----GGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE---EE---
T ss_pred ----------Ec----CCCCHHHHH----HHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE---EE---
Confidence 11 222222222 23345788764 6643 1377899999876 4665 34
Q ss_pred hHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 382 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 382 YaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
.|-++. |+...+.+||||+++.
T Consensus 175 ---------dGGI~~-----~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 175 ---------DGGVGP-----DTVHKCAEAGANMIVS 196 (228)
T ss_dssp ---------ESSCST-----TTHHHHHHHTCCEEEE
T ss_pred ---------eCCcCH-----HHHHHHHHcCCCEEEE
Confidence 455664 6777889999999875
No 481
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=25.99 E-value=1e+02 Score=28.89 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=35.9
Q ss_pred CceeechhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHH
Q 014017 149 GCYRLGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDR 209 (432)
Q Consensus 149 Gv~r~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~ 209 (432)
.-|+++.+ +++++++++.+.|++.|.+.|--++ .++ ..-+.+.++.||+.
T Consensus 80 ~~~~ls~e-ei~~~i~~~~~~g~~~i~~~gGe~p---------~~~-~~~~~~li~~i~~~ 129 (348)
T 3iix_A 80 KRYRMTPE-EIVERARLAVQFGAKTIVLQSGEDP---------YXM-PDVISDIVKEIKKM 129 (348)
T ss_dssp CCCBCCHH-HHHHHHHHHHHTTCSEEEEEESCCG---------GGT-THHHHHHHHHHHTT
T ss_pred CceeCCHH-HHHHHHHHHHHCCCCEEEEEeCCCC---------Ccc-HHHHHHHHHHHHhc
Confidence 34567885 6999999999999999998763111 122 13467788888876
No 482
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=25.98 E-value=1.5e+02 Score=28.57 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=40.0
Q ss_pred chhcCCcEEEEcCCCch----hHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEee
Q 014017 342 DESEGADILLVKPGLPY----LDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 342 Di~EGAD~lMVKPal~Y----LDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
..+-||+.|=|=-...| +|-++.+|+.+++||-.=-. .+|+-+ +.|+ |.+|||.|+
T Consensus 72 ~~~~GA~aiSVLTd~~~F~Gs~~~L~~vr~~v~lPvLrKDF--------------iid~yQ-I~eA----r~~GADaIL 131 (258)
T 4a29_A 72 FMERYAVGLSITTEEKYFNGSYETLRKIASSVSIPILMSDF--------------IVKESQ-IDDA----YNLGADTVL 131 (258)
T ss_dssp HHTTTCSEEEEECCSTTTCCCHHHHHHHHTTCSSCEEEESC--------------CCSHHH-HHHH----HHHTCSEEE
T ss_pred HHhCCCeEEEEeCCCCCCCCCHHHHHHHHHhcCCCEeeccc--------------cccHHH-HHHH----HHcCCCeee
Confidence 44679999988665555 78899999999999975432 455543 3555 556888775
No 483
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=25.80 E-value=1.5e+02 Score=28.48 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=23.3
Q ss_pred hhcCCcEEEE--cCCCc--hhHHHHHHHhhCCCCeE
Q 014017 343 ESEGADILLV--KPGLP--YLDVIRLLRDKYPLPIA 374 (432)
Q Consensus 343 i~EGAD~lMV--KPal~--YLDII~~vk~~~~lPva 374 (432)
.+.||+.|=| -|..+ -++-|+.+|+.+++||-
T Consensus 89 ~~~GA~~IsVltd~~~f~Gs~~~L~~ir~~v~lPVl 124 (272)
T 3tsm_A 89 EEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPAL 124 (272)
T ss_dssp HHTTCSEEEEECCSTTTCCCHHHHHHHHHTSSSCEE
T ss_pred HHCCCCEEEEeccccccCCCHHHHHHHHHhcCCCEE
Confidence 3468999987 23322 46677888999999996
No 484
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=25.78 E-value=78 Score=25.78 Aligned_cols=95 Identities=17% Similarity=0.248 Sum_probs=58.1
Q ss_pred CeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeee-----cccCCCCCCcceeecCCCccccHHHHH
Q 014017 172 NSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDV-----ALDPYSSDGHDGIVREDGVIMNDETVH 246 (432)
Q Consensus 172 ~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDV-----cLc~YTshGHcGIl~~~g~IdND~Tl~ 246 (432)
..+.+.|. ++ -|++-+..+|+++|++. |+++.-|. -|..|...| +-++.- + ..+-+
T Consensus 6 g~ly~VG~-Gp----------Gd~~~lT~~a~~~L~~a--dvv~~~~~~~~~~~l~~~~~~~-~~~~~~-~----~~~~~ 66 (117)
T 3hh1_A 6 GTLYVVAT-PL----------GNLDDMTFRAVNTLRNA--GAIACEDTRRTSILLKHFGIEG-KRLVSY-H----SFNEE 66 (117)
T ss_dssp CCEEEEEE-CS----------SCGGGSCHHHHHHHHHC--SEEEESCHHHHHHHHHHTTCCS-CCEEEC-C----STTHH
T ss_pred ceEEEEeC-CC----------CCHHHhhHHHHHHHHhC--CEEEEecCchHHHHHHHhCCCC-CEEecc-C----CccHH
Confidence 35667774 43 35677999999999987 66665442 133331111 112210 0 11223
Q ss_pred HHHHHHHHHHHcCCCeecCCC----CCCchHHHHHHHHHHCCC
Q 014017 247 QLCKQAVSQARAGADVVSPSD----MMDGRVGAIRAALDAEGF 285 (432)
Q Consensus 247 ~Lak~Avs~A~AGADiVAPSD----MMDGrV~aIR~aLD~~Gf 285 (432)
..++..+.+++.|-+++--|| +|=|+...+.+.|.++|+
T Consensus 67 ~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi 109 (117)
T 3hh1_A 67 RAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGL 109 (117)
T ss_dssp HHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCC
Confidence 445667777888888877775 455788888888888886
No 485
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=25.76 E-value=2.4e+02 Score=27.83 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=45.6
Q ss_pred HHHHHHHhchhcCCcEEEE------cCCCchh-------HHHHHHHhh-------CCCCeEEEEechhhHHHHHHHHCCC
Q 014017 334 EALVEAQADESEGADILLV------KPGLPYL-------DVIRLLRDK-------YPLPIAAYQVSGEYSMIKAGGALKM 393 (432)
Q Consensus 334 EAlre~~~Di~EGAD~lMV------KPal~YL-------DII~~vk~~-------~~lPvaaYqVSGEYaMikaAa~~G~ 393 (432)
|-+.++..-++++||+|-+ +|++..| ++++.+++. .++||.+=- + -+|
T Consensus 164 ~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi-~-----------p~~ 231 (367)
T 3zwt_A 164 EDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKI-A-----------PDL 231 (367)
T ss_dssp HHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEE-C-----------SCC
T ss_pred HHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEe-C-----------CCC
Confidence 3355555556778999887 4554443 677777653 679997653 2 233
Q ss_pred chhhHHHHHHHHHHHHcCccEee
Q 014017 394 IDEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 394 id~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+ -+.|....+.++|||.|+
T Consensus 232 -~~~-~~~~ia~~~~~aGadgi~ 252 (367)
T 3zwt_A 232 -TSQ-DKEDIASVVKELGIDGLI 252 (367)
T ss_dssp -CHH-HHHHHHHHHHHHTCCEEE
T ss_pred -CHH-HHHHHHHHHHHcCCCEEE
Confidence 332 357778888999999887
No 486
>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A
Probab=25.73 E-value=41 Score=32.67 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=44.1
Q ss_pred echhhhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEE
Q 014017 153 LGWRHGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIY 216 (432)
Q Consensus 153 ~si~~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~Ii 216 (432)
++.+ ++.++..++.+.|-.-|=|.. +|+.|...++++ ...+.+..||++.||++|-
T Consensus 31 vTpe-Eia~~A~~a~~AGAaivHlHv------Rd~~G~ps~d~~-~~~e~~~~IR~~~pd~ii~ 86 (282)
T 2y7e_A 31 ITPE-EQAKEAKACFEAGARVIHLHI------REDDGRPSQRLD-RFQEAISAIREVVPEIIIQ 86 (282)
T ss_dssp CSHH-HHHHHHHHHHHHTEEEEEECE------ECTTSCEECCHH-HHHHHHHHHHHHCTTSEEE
T ss_pred CCHH-HHHHHHHHHHHcCCcEEEEee------cCCCCCcCCCHH-HHHHHHHHHHHHCCCeEEE
Confidence 3454 699999999999987777754 445677777654 6788999999999998876
No 487
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=25.64 E-value=72 Score=29.21 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=30.3
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCC
Q 014017 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSD 267 (432)
Q Consensus 201 raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSD 267 (432)
..++.||+. +..|+.|+-| + |+-.|++..++. ++++|||+|.=.-
T Consensus 45 ~~v~~l~~~--~~~v~lD~kl---------------~--Dip~t~~~~~~~---~~~~Gad~vtvH~ 89 (239)
T 1dbt_A 45 SIVKQLKER--NCELFLDLKL---------------H--DIPTTVNKAMKR---LASLGVDLVNVHA 89 (239)
T ss_dssp HHHHHHHHT--TCEEEEEEEE---------------C--SCHHHHHHHHHH---HHTTTCSEEEEEG
T ss_pred HHHHHHHHC--CCcEEEEecc---------------c--cchHHHHHHHHH---HHhcCCCEEEEeC
Confidence 467777775 4557777655 1 567787765544 5789999995443
No 488
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=25.59 E-value=1.5e+02 Score=26.70 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEEEEc---CCCchhHHHHHHHhhC---CCCeEEEEechhhHHHHHHHHCCCch
Q 014017 329 YANYREALVEAQADESEGADILLVK---PGLPYLDVIRLLRDKY---PLPIAAYQVSGEYSMIKAGGALKMID 395 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~lMVK---Pal~YLDII~~vk~~~---~lPvaaYqVSGEYaMikaAa~~G~id 395 (432)
..|..||+..... ..--|+|++= |++.=+++++.+|+.. .+||.....+++......|.+.|..|
T Consensus 154 a~~~~eal~~l~~--~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~ 224 (259)
T 3luf_A 154 ASHAREALATLEQ--HPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAIIGISVSDKRGLSARYLKQGAND 224 (259)
T ss_dssp ESSHHHHHHHHHH--CTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSE
T ss_pred eCCHHHHHHHHhc--CCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeEEEEEccCCHHHHHHHHhcChhh
Confidence 5688899876642 1225888875 6666688999999865 48999988888888888788888755
No 489
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1 c.1.8.1
Probab=25.58 E-value=88 Score=31.93 Aligned_cols=61 Identities=15% Similarity=0.435 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC------------HHHHHHHHHHHCCCeEEEeeecccC
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL------------VPRTIWLLKDRYPDLVIYTDVALDP 223 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~------------v~raIr~iK~~fPdl~IitDVcLc~ 223 (432)
.++.+.+..+.++||++|-|=|+.+. +..+..|+.-+. +.+-|+.++++ .|-||-|+-+-+
T Consensus 31 ~gi~~~ldyl~~LGv~~I~l~Pi~~~----~~~~~GYd~~dy~~id~~~Gt~~df~~lv~~~h~~--Gi~VilD~V~NH 103 (558)
T 1uok_A 31 RGIISKLDYLKELGIDVIWLSPVYES----PNDDNGYDISDYCKIMNEFGTMEDWDELLHEMHER--NMKLMMDLVVNH 103 (558)
T ss_dssp HHHHTTHHHHHHHTCCEEEECCCEEC----CCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHT--TCEEEEEECCSB
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccC----CCCCCCCCcccccccCcccCCHHHHHHHHHHHHHC--CCEEEEEEeccc
Confidence 36778889999999999999775332 222344544332 23445555554 799999998754
No 490
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=25.40 E-value=1.9e+02 Score=28.01 Aligned_cols=64 Identities=17% Similarity=0.352 Sum_probs=46.9
Q ss_pred hcCCcEEEEcCCCch----------------------------hHHHHHHHhhCCCCeEEEEech-hhHHHHHHHHCCCc
Q 014017 344 SEGADILLVKPGLPY----------------------------LDVIRLLRDKYPLPIAAYQVSG-EYSMIKAGGALKMI 394 (432)
Q Consensus 344 ~EGAD~lMVKPal~Y----------------------------LDII~~vk~~~~lPvaaYqVSG-EYaMikaAa~~G~i 394 (432)
+-|.|.|=+--+--| ++||+.+|+..+.||+. -+|. ||. +.||
T Consensus 155 ~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~v-Rls~~~~~------~~g~- 226 (340)
T 3gr7_A 155 EAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFV-RISASDYH------PDGL- 226 (340)
T ss_dssp HHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEE-EEESCCCS------TTSC-
T ss_pred HcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEE-Eecccccc------CCCC-
Confidence 459999999866322 79999999999999875 6664 342 2465
Q ss_pred hhhHHHHHHHHHHHHcCccEee
Q 014017 395 DEQRVMMESLMCLRRAGADIIL 416 (432)
Q Consensus 395 d~~~~~~EsL~~ikRAGAd~Ii 416 (432)
+.+ -..|....+..+|+|+|-
T Consensus 227 ~~~-~~~~la~~L~~~Gvd~i~ 247 (340)
T 3gr7_A 227 TAK-DYVPYAKRMKEQGVDLVD 247 (340)
T ss_dssp CGG-GHHHHHHHHHHTTCCEEE
T ss_pred CHH-HHHHHHHHHHHcCCCEEE
Confidence 333 357888888999999884
No 491
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=25.31 E-value=1.7e+02 Score=27.20 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=28.4
Q ss_pred hHHHHHHHhhC--CCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh
Q 014017 359 LDVIRLLRDKY--PLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 359 LDII~~vk~~~--~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY 418 (432)
++.++++++.. ++||.+ .|-|..-+-+.|.| .+|||.|.-+
T Consensus 229 ~~~i~~v~~~~~~~ipvi~---------------~GGI~~~~da~~~l----~~GAd~V~vg 271 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIG---------------TGGIETGQDAFEHL----LCGATMLQIG 271 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEE---------------ESSCCSHHHHHHHH----HHTCSEEEEC
T ss_pred HHHHHHHHHhcCCCCCEEE---------------ECCCCCHHHHHHHH----HcCCCEEEEc
Confidence 78999999988 899875 34454333445554 4799998544
No 492
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=25.30 E-value=1.5e+02 Score=27.17 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCCCccccHHHHHHHHHHHHHHHHcCCCeecCCCCC-CchHHHHHHH
Q 014017 201 RTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMM-DGRVGAIRAA 279 (432)
Q Consensus 201 raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMM-DGrV~aIR~a 279 (432)
..++.||+. ++..|+.|+-| + |...|++..++. ++++|||+|.=.--+ ...+.+..++
T Consensus 54 ~~v~~l~~~-~g~~v~lD~Kl---------------~--DipnTv~~~~~~---~~~~gad~vtvh~~~G~~~l~~~~~~ 112 (228)
T 3m47_A 54 DIIAEFRKR-FGCRIIADFKV---------------A--DIPETNEKICRA---TFKAGADAIIVHGFPGADSVRACLNV 112 (228)
T ss_dssp HHHHHHHHH-HCCEEEEEEEE---------------C--SCHHHHHHHHHH---HHHTTCSEEEEESTTCHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCeEEEEEee---------------c--ccHhHHHHHHHH---HHhCCCCEEEEeccCCHHHHHHHHHH
Confidence 467778774 45667777654 1 567788887774 567999996554333 3345566666
Q ss_pred HHHCCCcccee
Q 014017 280 LDAEGFQHVSI 290 (432)
Q Consensus 280 LD~~Gf~~v~I 290 (432)
+.+.|- .|.+
T Consensus 113 ~~~~g~-~v~v 122 (228)
T 3m47_A 113 AEEMGR-EVFL 122 (228)
T ss_dssp HHHHTC-EEEE
T ss_pred HHhcCC-CeEE
Confidence 666563 3443
No 493
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=25.25 E-value=4.3e+02 Score=24.79 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCC-CCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeecCC
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDN-GLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVRED 236 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~-g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~~~ 236 (432)
.|.++++.+.+.|+..+-+ = |-+. -|-|| .+=...++.||+.+|++.+-++.-. . +
T Consensus 41 ~L~~~i~~l~~~G~d~lHv-D-VmDg--------~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv--~---------~-- 97 (246)
T 3inp_A 41 RLGDDVKAVLAAGADNIHF-D-VMDN--------HYVPNLTFGPMVLKALRDYGITAGMDVHLMV--K---------P-- 97 (246)
T ss_dssp GHHHHHHHHHHTTCCCEEE-E-EEBS--------SSSSCBCCCHHHHHHHHHHTCCSCEEEEEEC--S---------S--
T ss_pred hHHHHHHHHHHcCCCEEEE-E-ecCC--------CcCcchhcCHHHHHHHHHhCCCCeEEEEEee--C---------C--
Confidence 4899999999999986555 1 1110 11111 1224788999999988765433321 1 1
Q ss_pred CccccHHHHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCC
Q 014017 237 GVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFG 316 (432)
Q Consensus 237 g~IdND~Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~g 316 (432)
- +...+ .+++||||+|.--.--.-.+...-+...+.|. +++|.=
T Consensus 98 ----p----~~~i~---~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~-k~Gval------------------------ 141 (246)
T 3inp_A 98 ----V----DALIE---SFAKAGATSIVFHPEASEHIDRSLQLIKSFGI-QAGLAL------------------------ 141 (246)
T ss_dssp ----C----HHHHH---HHHHHTCSEEEECGGGCSCHHHHHHHHHTTTS-EEEEEE------------------------
T ss_pred ----H----HHHHH---HHHHcCCCEEEEccccchhHHHHHHHHHHcCC-eEEEEe------------------------
Confidence 1 12333 35789999986543322234444444455664 333311
Q ss_pred CcccccccccCCCCCHHHHHHHHHhchhcCCcEEEE---cCCC-------chhHHHHHHHhh-----CCCCeEEEEechh
Q 014017 317 DKKTYVIRVIELYANYREALVEAQADESEGADILLV---KPGL-------PYLDVIRLLRDK-----YPLPIAAYQVSGE 381 (432)
Q Consensus 317 DRktYQmd~~~~p~N~~EAlre~~~Di~EGAD~lMV---KPal-------~YLDII~~vk~~-----~~lPvaaYqVSGE 381 (432)
+ |...-|.++ .+.++.|+|++ -|+. .-|+-|+++|+. .++++. |
T Consensus 142 -------n----p~Tp~e~l~----~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~---V--- 200 (246)
T 3inp_A 142 -------N----PATGIDCLK----YVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLE---I--- 200 (246)
T ss_dssp -------C----TTCCSGGGT----TTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEE---E---
T ss_pred -------c----CCCCHHHHH----HHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEE---E---
Confidence 1 222122222 23345777763 5642 126777777764 235554 3
Q ss_pred hHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeeh
Q 014017 382 YSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 382 YaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiT 417 (432)
-|-++.+ ....+++||||+++.
T Consensus 201 ---------DGGI~~~-----ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 201 ---------DGGVNPY-----NIAEIAVCGVNAFVA 222 (246)
T ss_dssp ---------ESSCCTT-----THHHHHTTTCCEEEE
T ss_pred ---------ECCcCHH-----HHHHHHHcCCCEEEE
Confidence 4556654 566789999999874
No 494
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=25.23 E-value=5.2e+02 Score=25.82 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCC---------HHHHHHHHHHHC-CCeEEEeeecccCCC-
Q 014017 157 HGLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGL---------VPRTIWLLKDRY-PDLVIYTDVALDPYS- 225 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~---------v~raIr~iK~~f-Pdl~IitDVcLc~YT- 225 (432)
+.+.++++++++.|.++|-+ ..|....+..|. ..+-++++++.+ ||+-|+.|.. +.||
T Consensus 148 e~~~~~a~~~~~~Gf~~iKl----------k~g~~~~~~~G~~~~~~~~~~d~e~v~avR~avG~d~~L~vDan-~~~t~ 216 (433)
T 3rcy_A 148 DMAAESAADCVARGYTAVKF----------DPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTH-GQFTT 216 (433)
T ss_dssp HHHHHHHHHHHHTTCSEEEE----------CCSCCCBTTCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCC-SCBCH
T ss_pred HHHHHHHHHHHHcCCCEEEE----------cCCCCcccccCCCcchhhHHHHHHHHHHHHHHhCCCCeEEEeCC-CCCCH
Q ss_pred ----------CCCcceeecCCCccccHHHHHHHHH----------------HHHHHHHcC-CCeecCCCCCCchHHHHHH
Q 014017 226 ----------SDGHDGIVREDGVIMNDETVHQLCK----------------QAVSQARAG-ADVVSPSDMMDGRVGAIRA 278 (432)
Q Consensus 226 ----------shGHcGIl~~~g~IdND~Tl~~Lak----------------~Avs~A~AG-ADiVAPSDMMDGrV~aIR~ 278 (432)
..-.--.+.+.=.-+|-+.+..|.+ .+....+.| +|+|-|.=+-=|=|...|+
T Consensus 217 ~~A~~~~~~Le~~~i~~iEeP~~~~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~~~k 296 (433)
T 3rcy_A 217 AGAIRLGQAIEPYSPLWYEEPVPPDNVGAMAQVARAVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWEMKK 296 (433)
T ss_dssp HHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHHHSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCEEECCCChhhHHHHHHHHhccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHH
Q ss_pred HHHHCCCccceeecch
Q 014017 279 ALDAEGFQHVSIMSYT 294 (432)
Q Consensus 279 aLD~~Gf~~v~ImSYS 294 (432)
..+.+--.++.++.++
T Consensus 297 ia~lA~~~gv~~~~h~ 312 (433)
T 3rcy_A 297 VAAMAEVYNAQMAPHL 312 (433)
T ss_dssp HHHHHHTTTCEECCCC
T ss_pred HHHHHHHcCCEEEecC
No 495
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=25.15 E-value=4.4e+02 Score=26.20 Aligned_cols=136 Identities=11% Similarity=0.005 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHcCCCeEEE-eecCCCCCCC----cccC---cCcCCCC---CHHHHHHHHHHHC-CCeEEEeeecccCC
Q 014017 157 HGLVQEVAKARDVGVNSVVL-FPKVPDALKS----PTGD---EAYNDNG---LVPRTIWLLKDRY-PDLVIYTDVALDPY 224 (432)
Q Consensus 157 ~~l~~~v~~~~~~GI~sv~L-Fgvi~~~~Kd----~~gs---~A~n~~g---~v~raIr~iK~~f-Pdl~IitDVcLc~Y 224 (432)
+.+.++++++++.|.+.+-+ +|.-+ ...| +.+. ..|+... ...+-++++++.+ ||+-|+.|.. +.|
T Consensus 156 e~~~~~a~~~~~~G~~~iKlKvG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN-~~~ 233 (422)
T 3tji_A 156 EALFASVDALIAQGYRHIRCQLGFYG-GTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVH-ERL 233 (422)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEESCCC-BCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECT-TCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC-cccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECC-CCC
Confidence 36889999999999999998 44311 0001 0000 1111100 1245688889988 6899999975 445
Q ss_pred CCC-----------CcceeecCCCccccHHHHHHHHH----------------HHHHHHHc-CCCeecCCCCCCchHHHH
Q 014017 225 SSD-----------GHDGIVREDGVIMNDETVHQLCK----------------QAVSQARA-GADVVSPSDMMDGRVGAI 276 (432)
Q Consensus 225 Tsh-----------GHcGIl~~~g~IdND~Tl~~Lak----------------~Avs~A~A-GADiVAPSDMMDGrV~aI 276 (432)
|-. -.-..+.+.=.-+|-+.+..|.+ .+....+. ++|+|.|.=+-=|=+...
T Consensus 234 ~~~~A~~~~~~Le~~~i~~iEqP~~~~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~ 313 (422)
T 3tji_A 234 FPQQAVQLAKQLEPFQPYFIEDILPPQQSAWLEQVRQQSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPA 313 (422)
T ss_dssp CHHHHHHHHHHHGGGCCSEEECCSCGGGGGGHHHHHHHCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHH
T ss_pred CHHHHHHHHHHHHhhCCCeEECCCChhhHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHHHH
Confidence 410 01112222112234555666655 23334444 489999987776766665
Q ss_pred HHHHHHCCCccceeecch
Q 014017 277 RAALDAEGFQHVSIMSYT 294 (432)
Q Consensus 277 R~aLD~~Gf~~v~ImSYS 294 (432)
++..+.+--.++.++.++
T Consensus 314 ~kia~lA~a~gv~v~~h~ 331 (422)
T 3tji_A 314 LKLAHLCQAFGVRLAWHG 331 (422)
T ss_dssp HHHHHHHHHTTCEECCCC
T ss_pred HHHHHHHHHcCCEEEecC
Confidence 555543322345555554
No 496
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=25.14 E-value=75 Score=32.07 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHcCCCeEEEeecCCCCCCCcccCcCcCCCCCHHHHHHHHHHHCCCeEEEeeecccCCCCCCcceeec---
Q 014017 158 GLVQEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHDGIVR--- 234 (432)
Q Consensus 158 ~l~~~v~~~~~~GI~sv~LFgvi~~~~Kd~~gs~A~n~~g~v~raIr~iK~~fPdl~IitDVcLc~YTshGHcGIl~--- 234 (432)
+.+.|++.-++-|-.-||+=|- .+.-.-||.+|++||++=+. -|.-.|--..+.
T Consensus 244 EAlre~~~Di~EGAD~vMVKPa-----------------l~YLDIi~~vk~~~p~~P~a------aYqVSGEYAMikaAa 300 (342)
T 1h7n_A 244 LARRALERDMSEGADGIIVKPS-----------------TFYLDIMRDASEICKDLPIC------AYHVSGEYAMLHAAA 300 (342)
T ss_dssp HHHHHHHHHHHTTCSEEEEESS-----------------GGGHHHHHHHHHHTTTSCEE------EEECHHHHHHHHHHH
T ss_pred HHHHHHHhhHHhCCCeEEEecC-----------------ccHHHHHHHHHHhccCCCeE------EEEcCcHHHHHHHHH
Confidence 5788888889999999998443 23366899999999987765 576666555553
Q ss_pred CCCccccHHHHHHHHHHHHHHHHcCCCeec
Q 014017 235 EDGVIMNDETVHQLCKQAVSQARAGADVVS 264 (432)
Q Consensus 235 ~~g~IdND~Tl~~Lak~Avs~A~AGADiVA 264 (432)
++|-+|-+.. +.+.-+++-+||||+|-
T Consensus 301 ~~GwiD~~~~---v~Esl~~~kRAGAd~Ii 327 (342)
T 1h7n_A 301 EKGVVDLKTI---AFESHQGFLRAGARLII 327 (342)
T ss_dssp HTTSSCHHHH---HHHHHHHHHHTTCSEEE
T ss_pred HcCCccHHHH---HHHHHHHHHhcCCCEEE
Confidence 4788886643 45666889999999974
No 497
>2zvi_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; methionine salvage pathway, amino-acid biosynthesis, isomerase, magnesium, metal- binding; 2.30A {Bacillus subtilis}
Probab=25.04 E-value=1e+02 Score=31.81 Aligned_cols=138 Identities=23% Similarity=0.300 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHcCCCeecCCCCCCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccc
Q 014017 244 TVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVI 323 (432)
Q Consensus 244 Tl~~Lak~Avs~A~AGADiVAPSDMMDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQm 323 (432)
|-+.+++++..++..|.|+|= |+++..+-+-|-+--.+.- -+---+.|-+.+ |.+|-|-+
T Consensus 167 s~~~~a~~~ye~~~GGlDfiK----------------DDE~l~~qpf~p~~eRv~~-v~eai~ra~~eT---Ge~k~y~~ 226 (425)
T 2zvi_A 167 DLSDIKEQLRQQALGGVDLIK----------------DDEIFFETGLAPFETRIAE-GKQILKETYEQT---GHKTLYAV 226 (425)
T ss_dssp CHHHHHHHHHHHHHTTCSEEE----------------CCTTCCCSSSSCHHHHHHH-HHHHHHHHHHHH---SCCCEEEE
T ss_pred CHHHHHHHHHHHHhCCCCeee----------------CCCCCCCCCCccHHHHHHH-HHHHHHHHHHHh---CCcceeeC
Confidence 557789999999999999984 3344444443333333211 000111112222 77888888
Q ss_pred cccCCCCCHHHHHHHHHhchhcCCcEEEEcCCCchhHHHHHHHhh--CCCCeEEEEechhhHHHHHHHHCCCchhh----
Q 014017 324 RVIELYANYREALVEAQADESEGADILLVKPGLPYLDVIRLLRDK--YPLPIAAYQVSGEYSMIKAGGALKMIDEQ---- 397 (432)
Q Consensus 324 d~~~~p~N~~EAlre~~~Di~EGAD~lMVKPal~YLDII~~vk~~--~~lPvaaYqVSGEYaMikaAa~~G~id~~---- 397 (432)
|+. +..+|.++.++.=.+.|++++||=+-..=++.++.+++. .++|+-+ |=-| .|+++..
T Consensus 227 NiT---~~~~em~~Ra~~a~e~G~~~~mvd~~~~G~~a~~~l~~~~~~~l~lh~-HrA~----------hga~~r~~~~G 292 (425)
T 2zvi_A 227 NLT---GRTADLKDKARRAAELGADALLFNVFAYGLDVMQGLAEDPEIPVPIMA-HPAV----------SGAFTSSPFYG 292 (425)
T ss_dssp ECC---SCGGGHHHHHHHHHHTTCSEEEECGGGTCHHHHHHHHHCTTCCSCEEE-CCTT----------GGGGTSCSSSE
T ss_pred cCC---CCHHHHHHHHHHHHHhCCCeEEEeeeccChHHHHHHHHhCcCCCEEEe-ccCC----------cccccCCCCCC
Confidence 833 456788888877788999999999876668999999887 4788754 3322 1222221
Q ss_pred ---HHHHHHHHHHHHcCccEeeh
Q 014017 398 ---RVMMESLMCLRRAGADIILT 417 (432)
Q Consensus 398 ---~~~~EsL~~ikRAGAd~IiT 417 (432)
++++= +.+|=+|||.|++
T Consensus 293 i~~~Vll~--Kl~RLaGaD~ih~ 313 (425)
T 2zvi_A 293 FSHALLLG--KLNRYCGADFSLF 313 (425)
T ss_dssp ECHHHHTT--HHHHHTTCSEEEE
T ss_pred CcHHHHHh--HHHHHhCCCcccc
Confidence 22212 2456689999976
No 498
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.01 E-value=2.4e+02 Score=26.06 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCchHHHHHHHHHHCCCccceeecchhhhccccchhhhhhhhCCCCCCCcccccccccCCCCCHHHHHHHHHhchhcCCc
Q 014017 269 MDGRVGAIRAALDAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGAD 348 (432)
Q Consensus 269 MDGrV~aIR~aLD~~Gf~~v~ImSYSaKyASsfYGPFRdAa~Sap~~gDRktYQmd~~~~p~N~~EAlre~~~Di~EGAD 348 (432)
++.-|..+|+.++..|+ | .|+|-.... +-+ |+...++||+|+-+.-+-|+...+=.+-+--
T Consensus 48 le~av~~a~~~~~~~~~-d-VIISRGgta---------~~L--------r~~~~iPVV~I~vs~~Dil~aL~~a~~~~~k 108 (225)
T 2pju_A 48 FEKAVTYIRKKLANERC-D-AIIAAGSNG---------AYL--------KSRLSVPVILIKPSGYDVLQFLAKAGKLTSS 108 (225)
T ss_dssp HHHHHHHHHHHTTTSCC-S-EEEEEHHHH---------HHH--------HTTCSSCEEEECCCHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHhcCCC-e-EEEeCChHH---------HHH--------HhhCCCCEEEecCCHHHHHHHHHHHHhhCCc
Confidence 45556667776666665 4 445542211 112 3445699999999999988888877777777
Q ss_pred EEEEcCCCchhHHHHHHHhhCCCCeEEEEechhhHHHHHHHHCCCchhhHHHHHHHHHHHHcCccEeehh-cHHHHHH
Q 014017 349 ILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLRRAGADIILTY-FALQAAR 425 (432)
Q Consensus 349 ~lMVKPal~YLDII~~vk~~~~lPvaaYqVSGEYaMikaAa~~G~id~~~~~~EsL~~ikRAGAd~IiTY-fA~~~a~ 425 (432)
+-+|=-.. .+.-++.+.+.+++.+-.|.+..+ +-+.+.+..+++.|+++||.- .+.++|+
T Consensus 109 IavVg~~~-~~~~~~~i~~ll~~~i~~~~~~~~----------------ee~~~~i~~l~~~G~~vVVG~~~~~~~A~ 169 (225)
T 2pju_A 109 IGVVTYQE-TIPALVAFQKTFNLRLDQRSYITE----------------EDARGQINELKANGTEAVVGAGLITDLAE 169 (225)
T ss_dssp EEEEEESS-CCHHHHHHHHHHTCCEEEEEESSH----------------HHHHHHHHHHHHTTCCEEEESHHHHHHHH
T ss_pred EEEEeCch-hhhHHHHHHHHhCCceEEEEeCCH----------------HHHHHHHHHHHHCCCCEEECCHHHHHHHH
Confidence 77774432 244456777888888888887433 223566667777777777753 3344443
No 499
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=24.89 E-value=2.8e+02 Score=24.83 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHhchhcCCcEE--EEc-----CCCch-hHHHHHHHhhCCCC----eEEEEechhhHHHHHHHHCC--Cc
Q 014017 329 YANYREALVEAQADESEGADIL--LVK-----PGLPY-LDVIRLLRDKYPLP----IAAYQVSGEYSMIKAGGALK--MI 394 (432)
Q Consensus 329 p~N~~EAlre~~~Di~EGAD~l--MVK-----Pal~Y-LDII~~vk~~~~lP----vaaYqVSGEYaMikaAa~~G--~i 394 (432)
+.|..|.++.+ ++-|||+| -+| |.+.+ +++++.+|+.++.| +..++ .++| ++.+.+.| ++
T Consensus 18 ~~~l~~~i~~~---~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d-~~~~--i~~~~~agad~v 91 (228)
T 1h1y_A 18 FANLAAEADRM---VRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTN-PSDY--VEPLAKAGASGF 91 (228)
T ss_dssp GGGHHHHHHHH---HHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSC-GGGG--HHHHHHHTCSEE
T ss_pred HHHHHHHHHHH---HHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecC-HHHH--HHHHHHcCCCEE
Confidence 44566666665 35689984 444 44333 79999999876544 44444 3556 33333333 22
Q ss_pred ---hh--hHHHHHHHHHHHHcCccEeehh
Q 014017 395 ---DE--QRVMMESLMCLRRAGADIILTY 418 (432)
Q Consensus 395 ---d~--~~~~~EsL~~ikRAGAd~IiTY 418 (432)
++ +..+.+.+..++..|..++++-
T Consensus 92 ~vH~~~~~~~~~~~~~~i~~~g~~igv~~ 120 (228)
T 1h1y_A 92 TFHIEVSRDNWQELIQSIKAKGMRPGVSL 120 (228)
T ss_dssp EEEGGGCTTTHHHHHHHHHHTTCEEEEEE
T ss_pred EECCCCcccHHHHHHHHHHHcCCCEEEEE
Confidence 11 1222566777788888777764
No 500
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=24.85 E-value=1.5e+02 Score=29.33 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=25.8
Q ss_pred hhcCCcEEEEcCC-------CchhHHHHHHHhhCCCCeEE
Q 014017 343 ESEGADILLVKPG-------LPYLDVIRLLRDKYPLPIAA 375 (432)
Q Consensus 343 i~EGAD~lMVKPa-------l~YLDII~~vk~~~~lPvaa 375 (432)
.+.|+|+|-|=.+ ...++.++.+|+.+++||.+
T Consensus 265 e~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~ 304 (377)
T 2r14_A 265 DRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIY 304 (377)
T ss_dssp HHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEE
T ss_pred HHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEE
Confidence 3579999988432 12589999999999999986
Done!