RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014017
(432 letters)
>d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 329
Score = 352 bits (904), Expect = e-120
Identities = 147/328 (44%), Positives = 210/328 (64%), Gaps = 9/328 (2%)
Query: 103 SRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGE-EDTPIGAMPGCYRLGWRHGLVQ 161
R RRNR+ R +E L+ + + P+F+ +G + I +MPG RL L+
Sbjct: 6 YTRLRRNRRDDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQ-LLI 64
Query: 162 EVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVAL 221
E + +G+ ++ LFP P KS EAYN G+ R L++R+P+L I TDVAL
Sbjct: 65 EAEEWVALGIPALALFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVAL 124
Query: 222 DPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALD 281
DP+++ G +GI+ +DG ++ND ++ L +QA+S A AGA VV+PSDMMDGR+GAIR AL+
Sbjct: 125 DPFTTHGQNGILDDDGYVLNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALE 184
Query: 282 AEGFQHVSIMSYTAKYASSFYGPFREALDS--NPRFGDKKTYVIRVIELYANYREALVEA 339
+ G +V +M+Y+AKYAS++YGPFR+A+ S N G+K TY + AN EAL E
Sbjct: 185 SAGHTNVRVMAYSAKYASAYYGPFRDAVGSASNLGKGNKATYQM----DPANSDEALHEV 240
Query: 340 QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRV 399
AD +EGAD+++VKPG+PYLD++R ++D++ P YQVSGEY+M + E V
Sbjct: 241 AADLAEGADMVMVKPGMPYLDIVRRVKDEFRAPTFVYQVSGEYAMHMGAIQNGWLAE-SV 299
Query: 400 MMESLMCLRRAGADIILTYFALQAARCL 427
++ESL +RAGAD ILTYFA QAA L
Sbjct: 300 ILESLTAFKRAGADGILTYFAKQAAEQL 327
>d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Prosthecochloris
vibrioformis [TaxId: 1098]}
Length = 319
Score = 347 bits (891), Expect = e-119
Identities = 167/325 (51%), Positives = 219/325 (67%), Gaps = 9/325 (2%)
Query: 104 RRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEEDT-PIGAMPGCYRLGWRHGLVQE 162
RPRR R++ A+R QE L+ + V+PLF+ G + +MPG +R V+E
Sbjct: 2 HRPRRLRRTAALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDR-AVEE 60
Query: 163 VAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALD 222
+ D+G+ + LF K+ G EAYNDNG++ + I +K P+L I TDVALD
Sbjct: 61 CKELYDLGIQGIDLFGIPEQ--KTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALD 118
Query: 223 PYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDA 282
P++ GHDG+V +DG+I+NDETV L K AVS A AGAD VSPSDMMDGR+GAIR ALD
Sbjct: 119 PFTPFGHDGLV-KDGIILNDETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDE 177
Query: 283 EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQAD 342
V I+SY AKYASSFYGPFR+AL S P+FGDK TY + AN EA+ E + D
Sbjct: 178 TDHSDVGILSYAAKYASSFYGPFRDALHSAPQFGDKSTYQM----NPANTEEAMKEVELD 233
Query: 343 ESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVMME 402
EGADI++VKPGL YLD++ ++++ +P+A Y VSGEY+M+KA A IDE RVMME
Sbjct: 234 IVEGADIVMVKPGLAYLDIVWRTKERFDVPVAIYHVSGEYAMVKAAAAKGWIDEDRVMME 293
Query: 403 SLMCLRRAGADIILTYFALQAARCL 427
SL+C++RAGADII TY+A +AA+ L
Sbjct: 294 SLLCMKRAGADIIFTYYAKEAAKKL 318
>d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Escherichia coli [TaxId:
562]}
Length = 323
Score = 344 bits (885), Expect = e-118
Identities = 152/325 (46%), Positives = 212/325 (65%), Gaps = 10/325 (3%)
Query: 102 LSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLV 160
L +RPRR RKSPA+RA F+ET LS + V P+F+ E +D + AMPG R+ +H L
Sbjct: 3 LIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKH-LA 61
Query: 161 QEVAKARDVGVNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVA 220
+E+ + + G+ SV+ F + TG +A+ ++GLV R + K P++++ +D
Sbjct: 62 REIERIANAGIRSVMTFGISHHTDE--TGSDAWREDGLVARMSRICKQTVPEMIVMSDTC 119
Query: 221 LDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAAL 280
Y+S GH G++ E G + ND T+ L KQAV A AGAD ++PS MDG+V AIR AL
Sbjct: 120 FCEYTSHGHCGVLCEHG-VDNDATLENLGKQAVVAAAAGADFIAPSAAMDGQVQAIRQAL 178
Query: 281 DAEGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQ 340
DA GF+ +IMSY+ K+ASSFYGPFREA S GD+K+Y + N REA+ E+
Sbjct: 179 DAAGFKDTAIMSYSTKFASSFYGPFREAAGSAL-KGDRKSYQM----NPMNRREAIRESL 233
Query: 341 ADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGEYSMIKAGGALKMIDEQRVM 400
DE++GAD L+VKP YLD++R LR++ LPI AYQVSGEY+MIK IDE++V+
Sbjct: 234 LDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAIDEEKVV 293
Query: 401 MESLMCLRRAGADIILTYFALQAAR 425
+ESL ++RAGAD+I +YFAL A
Sbjct: 294 LESLGSIKRAGADLIFSYFALDLAE 318
>d1pv8a_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Human (Homo sapiens) [TaxId:
9606]}
Length = 320
Score = 327 bits (839), Expect = e-111
Identities = 128/319 (40%), Positives = 194/319 (60%), Gaps = 9/319 (2%)
Query: 113 PAMRA-SFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRLGWRHGLVQEVAKARDVG 170
P +RA T L+ +N +YP+F+ + +D PI ++PG R G + L + + + G
Sbjct: 4 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKR-LEEMLRPLVEEG 62
Query: 171 VNSVVLFPKVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPDLVIYTDVALDPYSSDGHD 230
+ V++F K G A ++ I LL+ +P+L++ DV L PY+S GH
Sbjct: 63 LRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHGHC 122
Query: 231 GIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGFQH-VS 289
G++ E+G +E+ +L + A++ A+AG VV+PSDMMDGRV AI+ AL A G + VS
Sbjct: 123 GLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPSDMMDGRVEAIKEALMAHGLGNRVS 182
Query: 290 IMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYANYREALVEAQADESEGADI 349
+MSY+AK+AS FYGPFR+A S+P FGD++ Y + AL D EGAD+
Sbjct: 183 VMSYSAKFASCFYGPFRDAAKSSPAFGDRRCYQL----PPGARGLALRAVDRDVREGADM 238
Query: 350 LLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGALKMIDEQRVMMESLMCLR 408
L+VKPG+PYLD++R ++DK+P LP+A Y VSGE++M+ G D + ++E++ R
Sbjct: 239 LMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFR 298
Query: 409 RAGADIILTYFALQAARCL 427
RAGADII+TY+ Q + L
Sbjct: 299 RAGADIIITYYTPQLLQWL 317
>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD
(porphobilinogen synthase) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 340
Score = 315 bits (808), Expect = e-106
Identities = 115/337 (34%), Positives = 172/337 (51%), Gaps = 9/337 (2%)
Query: 95 PVVPSLPLSRRPRRNRKSPAMRASFQETNLSPANFVYPLFIHEGEED-TPIGAMPGCYRL 153
+S P +R E L+ ++PLFI + +D T I ++P R+
Sbjct: 7 LETEPTEISSVLAGGYNHPLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRI 66
Query: 154 GWRHGLVQEVAKARDVGVNSVVLFP-KVPDALKSPTGDEAYNDNGLVPRTIWLLKDRYPD 212
G L + G+ SV+LF + K P G A + G V + I +++ +P+
Sbjct: 67 GVNR-LKDYLKPLVAKGLRSVILFGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPE 125
Query: 213 LVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGR 272
L I DV L Y+S GH G++ +DG I + +V +L AV+ A+AGA V+PSDM+DGR
Sbjct: 126 LYIICDVCLCEYTSHGHCGVLYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPSDMIDGR 185
Query: 273 VGAIRAALDA-EGFQHVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYVIRVIELYAN 331
+ I+ L ++SY AK++ + YGPFR+A S P GD+K Y + A
Sbjct: 186 IRDIKRGLINANLAHKTFVLSYAAKFSGNLYGPFRDAACSAPSNGDRKCYQL----PPAG 241
Query: 332 YREALVEAQADESEGADILLVKPGLPYLDVIRLLRDKYP-LPIAAYQVSGEYSMIKAGGA 390
A + D SEGAD ++VKP YLD++R + LPI AY VSGEY+M+ A
Sbjct: 242 RGLARRALERDMSEGADGIIVKPSTFYLDIMRDASEICKDLPICAYHVSGEYAMLHAAAE 301
Query: 391 LKMIDEQRVMMESLMCLRRAGADIILTYFALQAARCL 427
++D + + ES RAGA +I+TY A + L
Sbjct: 302 KGVVDLKTIAFESHQGFLRAGARLIITYLAPEFLDWL 338
>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur
protein methyltransferase MetR {Moorella thermoacetica
[TaxId: 1525]}
Length = 262
Score = 29.3 bits (65), Expect = 0.90
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 13/102 (12%)
Query: 331 NYREALVEAQADESEGADILLVKPGLPYLDVIRLLRD---------KYPLPIAAYQVSGE 381
+ A+ E GA L + G D + + L + + +
Sbjct: 23 DPAPVQEWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAI 82
Query: 382 YSMIKAGGALKMID----EQRVMMESLMCLRRAGADIILTYF 419
+ +K MI+ E+ + + GA +I
Sbjct: 83 EAGLKKCKNRAMINSTNAEREKVEKLFPLAVEHGAALIGLTM 124
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 29.4 bits (65), Expect = 1.2
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 109 NRKSPAMRASFQET 122
+ KS ASFQ T
Sbjct: 1429 STKSWLSAASFQNT 1442
>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox
component of NADPH oxidase) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 26.7 bits (59), Expect = 1.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 350 LLVKPGLPYLDVIRLLRDKYPLPIAAYQVS 379
+ +PGLPY V ++ K L + ++S
Sbjct: 18 MKTQPGLPYSQVRDMVSKKLELRLEHTKLS 47
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 28.7 bits (63), Expect = 2.0
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 108 RNRKSPAMRASFQET 122
R+ MR SF+ET
Sbjct: 1390 RSNTGALMRCSFEET 1404
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella
flexneri [TaxId: 623]}
Length = 247
Score = 27.6 bits (61), Expect = 3.0
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query: 338 EAQADESEGAD-ILLVKP----GL-PYLDVIRLLRDKYPLPIAAYQVSGEYSMI--KAGG 389
A + GAD + L GL P L V++ +R + +P+ + +I + G
Sbjct: 12 CALTAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPV--------HPIIRPRGGD 63
Query: 390 ALKMIDEQRVMMESLMCLRRAGADII 415
E ++E + +R G +
Sbjct: 64 FCYSDGEFAAILEDVRTVRELGFPGL 89
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 27.4 bits (61), Expect = 3.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 314 RFGDKKTYVIRVIELYANYREALVEAQADESEGADILLV 352
+GDK ++ VI N E + +A A +GAD++ V
Sbjct: 144 EYGDKSGPLLYVIVATGNIYEDITQAVAAAKQGADVIAV 182
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 26.5 bits (57), Expect = 6.0
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 237 GVIMNDETVHQLC------KQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF 285
G ND ++ QA + AD V+ + +G AI L+ G+
Sbjct: 175 GDGENDLDAFKVVGYKVAVAQAPKILKENADYVTKKEYGEGGAEAIYHILEKFGY 229
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 26.2 bits (58), Expect = 6.4
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 323 IRVIELYANYREALVEA-QADESEGADILLVKPGLPYLDVIRLLRDKYPLPIAAYQVSGE 381
I I+ + +A+ + +E D ++ L+ + +P+ + SG
Sbjct: 29 ITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGSN-----GAYLKSRLSVPVILIKPSG- 80
Query: 382 YSMIKA 387
Y +++
Sbjct: 81 YDVLQF 86
>d1v02a_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Sorghum
bicolor [TaxId: 4558]}
Length = 484
Score = 26.7 bits (58), Expect = 7.3
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 132 PLFIHE---GEEDTPIGAMPGC----YRLGWRHGLVQEVAKARDVGVN 172
P++I E G+ D P RL + + + ++ D+G +
Sbjct: 387 PMYITENGMGDIDKGDLPKPVALEDHTRLDYIQRHLSVLKQSIDLGAD 434
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,597,061
Number of extensions: 75571
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 18
Length of query: 432
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,199,356
Effective search space: 412578464
Effective search space used: 412578464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)