BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014018
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 160 RLPLLILSMKESDNENRPAVVF-LHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERA 218
RL L LS+ E A++ LH + KE + LL YA RG++ + D+ HGER
Sbjct: 7 RLTLAGLSVLARIPEAPKALLLALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGERE 66
Query: 219 ----SSKT------TYRDAL 228
SSK+ YR AL
Sbjct: 67 GPPPSSKSPRYVEEVYRVAL 86
>pdb|4AO6|A Chain A, Native Structure Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
pdb|4AO7|A Chain A, Zinc Bound Structure Of A Novel Cold-Adapted Esterase From
An Arctic Intertidal Metagenomic Library
pdb|4AO8|A Chain A, Peg-Bound Complex Of A Novel Cold-Adapted Esterase From An
Arctic Intertidal Metagenomic Library
Length = 259
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 14/124 (11%)
Query: 184 STRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERAS-------SKTTYRDALVSSWKNGD 236
+T K E++ + + RG A+ ID HGERAS + DA W G
Sbjct: 66 TTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGG 125
Query: 237 TMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAW-YAAADTRYKV-IVPII 294
+ + D++ E PT G G S+G M A+D R KV ++ ++
Sbjct: 126 GTAAVIADWAAAL---DFIEAEEGPRPT--GWWGLSMGTMMGLPVTASDKRIKVALLGLM 180
Query: 295 GVQG 298
GV+G
Sbjct: 181 GVEG 184
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 248 LIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAAD--TRYKVIVPIIG 295
+IK+ L +ID RI ITG S+GG W A + + +PI G
Sbjct: 247 VIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICG 296
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 169 KESDNENRPAVVFLHSTRKCK---EWLRPLLEAYASRGYIAIG----IDSRYHGERASSK 221
+ S R +VFLH + K E+ P L A + G AI ID HG+ A +
Sbjct: 45 RRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVNHGDSAV-R 103
Query: 222 TTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHA 278
R +W +G A D++K+A D P + G S+GG A
Sbjct: 104 NRGRLGTNFNWIDG---------ARDVLKIATXELGSIDSHPALNVVIGHSMGGFQA 151
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 249 IKLADYLTQREDIDPTRIG-ITGESLGGMHAWYA 281
+ L D + ED+DP R+G + G +GGM W A
Sbjct: 81 LALEDAGLKPEDLDPERVGTLVGTGIGGMETWEA 114
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 24/112 (21%)
Query: 174 ENRP-AVVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASS--KTTYRDALVS 230
EN P V+ +H +RPL EAYA GY + HG +TT+ D V+
Sbjct: 37 ENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHYEDMERTTFHD-WVA 95
Query: 231 SWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAA 282
S + G W L QR I +TG S+GG Y A
Sbjct: 96 SVEEG--------YGW--------LKQRCQ----TIFVTGLSMGGTLTLYLA 127
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 176 RPAVVFLHS-TRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERAS-----SKTTYRDALV 229
PA++ H + +W L Y + G+ + +D R G ++ + T ++
Sbjct: 108 HPALIRFHGYSSNSGDWNDKL--NYVAAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHII 165
Query: 230 SSWKN-GDTMPF---IFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAA 283
+ D M F DTA +LA + ++D R+G+ G S GG + AA
Sbjct: 166 RGLDDDADNMLFRHIFLDTA----QLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAA 219
>pdb|3NUZ|A Chain A, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|B Chain B, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|C Chain C, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|D Chain D, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|E Chain E, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
pdb|3NUZ|F Chain F, Crystal Structure Of A Putative Acetyl Xylan Esterase
(Bf1801) From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 398
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 199 YASRGYIAIGIDSRYHGERASSKTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYL--- 255
+ GYIA+ +D+ GE + + R L S++ ++ + W + A YL
Sbjct: 160 FVKEGYIAVAVDNPAAGEASDLE---RYTLGSNYDYDVVSRYLLELGWSYLGYASYLDXQ 216
Query: 256 ------TQREDIDPTRIGITGESLG 274
TQ+ I RI ++G SLG
Sbjct: 217 VLNWXKTQKH-IRKDRIVVSGFSLG 240
>pdb|2HDW|A Chain A, Crystal Structure Of Hypothetical Protein Pa2218 From
Pseudomonas Aeruginosa
pdb|2HDW|B Chain B, Crystal Structure Of Hypothetical Protein Pa2218 From
Pseudomonas Aeruginosa
Length = 367
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 45/125 (36%), Gaps = 16/125 (12%)
Query: 169 KESDNENRPAVVFLHSTRKCKEWLRPLL-EAYASRGYIAIGIDSRYHGERASSKTTYRDA 227
K + PA+V KE L + A RG++ + D Y GE R+
Sbjct: 89 KNRGGDRLPAIVIGGPFGAVKEQSSGLYAQTMAERGFVTLAFDPSYTGESGGQP---RNV 145
Query: 228 LVSSWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGE-SLGGMHAWYAAADTR 286
D F A D I L +++ RIG+ G GGM A D R
Sbjct: 146 ASPDINTED-----FSAAVDFISLL------PEVNRERIGVIGICGWGGMALNAVAVDKR 194
Query: 287 YKVIV 291
K +V
Sbjct: 195 VKAVV 199
>pdb|4A3U|A Chain A, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
pdb|4A3U|B Chain B, X-Structure Of The Old Yellow Enzyme Homologue From
Zymomonas Mobilis (Ncr)
Length = 358
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 179 VVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDA 227
+ F T K + W+ PL A+R ++ I + Y+ +RAS+ +A
Sbjct: 8 IRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEA 56
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 251 LADYLTQREDIDPTRIGITGESLGGMHAWYAAA 283
+ D LT+ E I IG+ G SLGG +A +AA
Sbjct: 210 VVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAA 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,743,143
Number of Sequences: 62578
Number of extensions: 507359
Number of successful extensions: 1102
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 22
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)