BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014018
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34973|YTAP_BACSU Putative hydrolase YtaP OS=Bacillus subtilis (strain 168) GN=ytaP
PE=3 SV=1
Length = 299
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 95/239 (39%), Gaps = 51/239 (21%)
Query: 201 SRGYIAIGIDSRYHGER--ASSKTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYLTQR 258
S GY + ID G+R + +++ L++ G M + +D + DY+ R
Sbjct: 102 SLGYGVLAIDHWGFGDRRGKAESEIFKEMLLT----GKVMWGMM--IYDSLSALDYMQSR 155
Query: 259 EDIDPTRIGITGESLGGMHAWYAAA-DTRYKVIVPIIGVQGFRWAIENDKWQARVGSIKA 317
D+ P RIG G S+GG+ AW+ AA D R KV V +
Sbjct: 156 SDVQPDRIGTIGMSMGGLMAWWTAALDDRIKVCVDLC----------------------- 192
Query: 318 VFEEARTDLGKSTIDKEVVEKV--WDR-----IAPGLASQFDSPYTIPAIAPRPLLIING 370
S +D V+ K DR P LA F + IAPRP L + G
Sbjct: 193 -----------SQVDHHVLIKTQNLDRHGFYYYVPSLAKHFSASEIQSLIAPRPHLSLVG 241
Query: 371 AEDPRCPLAGLEIPKARARKAYAEANCSDNFKVVAEPGIGHQMTPFMVKEASDWLDKFL 429
D P G++ + YA +D ++VV GH T + EA +L K+L
Sbjct: 242 VHDRLTPAEGVDKIEKELTAVYAGQGAADCYRVVRSAS-GHFETAVIRHEAVRFLQKWL 299
>sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168)
GN=yuxL PE=3 SV=3
Length = 657
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 78/186 (41%), Gaps = 36/186 (19%)
Query: 196 LEAYASRGYIAIGIDSR-YHGERASSKTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADY 254
+ A++GY + I+ R HG Y V++ + GD +D D+++ D
Sbjct: 452 FQVLAAKGYAVVYINPRGSHG--------YGQEFVNAVR-GDYGGKDYD---DVMQAVDE 499
Query: 255 LTQRE-DIDPTRIGITGESLGG-MHAWYAAADTRYKVIVPIIGVQGFRWAIENDKWQARV 312
+R+ IDP R+G+TG S GG M W R+K V + +I N V
Sbjct: 500 AIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQTNRFKAAVT-------QRSISNWISFHGV 552
Query: 313 GSIKAVFEEARTDLGKSTIDKEVVEKVWDRIAPGLASQFDSPYTIPAIAPRPLLIINGAE 372
I F TD E EK+WDR SP A PLLI++G
Sbjct: 553 SDIGYFF----TDWQLEHDMFEDTEKLWDR----------SPLKYAANVETPLLILHGER 598
Query: 373 DPRCPL 378
D RCP+
Sbjct: 599 DDRCPI 604
>sp|Q99390|YPT2_ECOLX Uncharacterized 31.7 kDa protein in traX-finO intergenic region
OS=Escherichia coli PE=3 SV=1
Length = 286
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
Query: 173 NENRPAVVFLHSTRKCKEWLRPLL-EAYASRGYIAIGIDSRYHGERASSKTTYRDALVSS 231
N P ++ H + L P A+ G+ I D R GE S
Sbjct: 22 NIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRGFGE-------------SD 68
Query: 232 WKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAA-DTRYKVI 290
+ G +P + D+I + ++ ++E ID RIG+ G SLGG H + AAA D R K I
Sbjct: 69 GERGRLVPAM--QTEDIISVINWAEKQECIDNQRIGLWGTSLGGGHVFSAAAQDQRVKCI 126
Query: 291 V 291
V
Sbjct: 127 V 127
>sp|P70948|YITV_BACSU Putative esterase YitV OS=Bacillus subtilis (strain 168) GN=yitV
PE=4 SV=2
Length = 255
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 107/269 (39%), Gaps = 25/269 (9%)
Query: 161 LPLLILSMKESDNENRPAVVFLHSTRKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASS 220
+P L + +E+ + P V+F+H KE + A +G+ A+ ++ +HGER
Sbjct: 12 IPFLHIVKEENRHRAVPLVIFIHGFTSAKEHNLHIAYLLAEKGFRAVLPEALHHGERGEE 71
Query: 221 KTTYRDALVSSWKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWY 280
A G + + ++ L ++ + ID RIG+ G S+GG+
Sbjct: 72 MAVEELA-------GHFWDIVLNEIEEIGVLKNHFEKEGLIDGGRIGLAGTSMGGITT-- 122
Query: 281 AAADTRYKVIVPIIGVQGFRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKVW 340
A T Y I + + G +E +F++ + I+ +V E+
Sbjct: 123 LGALTAYDWIKAGVSLMGSPNYVE-------------LFQQQIDHIQSQGIEIDVPEEKV 169
Query: 341 DRIAPGLASQFDSPYTIPAIAPRPLLIINGAEDPRCPLAGLEIPKARARKAYAEANCSDN 400
++ L + D + RPLL +GA+D P A + Y+E +
Sbjct: 170 QQLMKRLELR-DLSLQPEKLQQRPLLFWHGAKDKVVPYAPTRKFYDTIKSHYSEQ--PER 226
Query: 401 FKVVAEPGIGHQMTPFMVKEASDWLDKFL 429
+ + + H++ V + +W + +L
Sbjct: 227 LQFIGDENADHKVPRAAVLKTIEWFETYL 255
>sp|P29368|YPT1_ECOLX Uncharacterized 31.7 kDa protein in traX-finO intergenic region
OS=Escherichia coli PE=4 SV=1
Length = 286
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 173 NENRPAVVFLHSTRKCKEWLRPLL-EAYASRGYIAIGIDSRYHGERASSKTTYRDALVSS 231
N P ++ H + L P A+ G+ I D R GE S
Sbjct: 22 NIKHPLIILCHGFCGIRNVLLPCFANAFTEAGFATITFDYRGFGE-------------SD 68
Query: 232 WKNGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYA-AADTRYKVI 290
+ G +P + D+I + ++ ++E ID RIG+ G SLGG H + A A D R K I
Sbjct: 69 GERGRLVPAM--QTEDIISVINWAEKQECIDNQRIGLWGTSLGGGHVFSARAQDQRVKCI 126
Query: 291 V 291
V
Sbjct: 127 V 127
>sp|Q8ZN39|YFHR_SALTY Uncharacterized protein YfhR OS=Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720) GN=yfhR PE=3 SV=1
Length = 292
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 29/142 (20%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKVIVPIIGVQGFRWAIENDKWQARV 312
DY+ R D++P R+ + G+SLGG + A +G R+A +
Sbjct: 137 DYVRHRADVNPERLVLLGQSLGGNNVLAAVGHC--------VGCANMRYADQ-------- 180
Query: 313 GSIKAVFEEARTDLGKSTIDKEVVEKVWDRIAPGLASQFDSPYT----IPAIAPRPLLII 368
I+A+ ++ T L S+I +++ PG D Y+ I +++P P+LI+
Sbjct: 181 AGIRAIILDS-TFLSYSSIANQMI--------PGSGYLLDDRYSADRNIASVSPIPVLIL 231
Query: 369 NGAEDPRCPLAGLEIPKARARK 390
+G D P E A AR+
Sbjct: 232 HGTADHVIPWQDSEKLYALARE 253
>sp|Q8Z4M8|YHFR_SALTI Uncharacterized protein YfhR OS=Salmonella typhi GN=yhfR PE=3 SV=1
Length = 292
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKVIVPIIGVQGFRWAIENDKWQARV 312
DY+ R D++P R+ + G+SLGG + A +G R+A D+ R
Sbjct: 137 DYVRHRADVNPERLVLLGQSLGGNNVLAAVGHC--------VGCANMRYA---DQAGIRA 185
Query: 313 GSIKAVFEEARTDLGKSTIDKEVVEKVWDRIAPGLASQFDSPYT----IPAIAPRPLLII 368
+ + F S+I +++ PG D Y+ I +++P P+LI+
Sbjct: 186 IVLDSTFSS------YSSIANQMI--------PGSGYLLDDRYSADRNIASVSPIPVLIL 231
Query: 369 NGAEDPRCPLAGLEIPKARARK 390
+G D P E A AR+
Sbjct: 232 HGTADHVIPWQDSEKLYALARE 253
>sp|P76049|YCJY_ECOLI Uncharacterized protein YcjY OS=Escherichia coli (strain K12)
GN=ycjY PE=4 SV=2
Length = 306
Score = 38.5 bits (88), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 19/157 (12%)
Query: 178 AVVFLHSTRKCKEWLR-PLLEAYASRGYIAIGIDSRYHGERASSKTTYRDALVSSWKNGD 236
A+V H KE + A +G++ I D+ Y GE +
Sbjct: 36 AIVLSHPGGGVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLEN---------- 85
Query: 237 TMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLG-GMHAWYAAADTRYKVIVPIIG 295
P+I D+ + DYLT +D TRIG G G G A A D R K I +
Sbjct: 86 --PYI--RTEDISAVIDYLTTLSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSA 141
Query: 296 VQGFRWAIENDKWQARVGSIKAV-FEEARTDLGKSTI 331
V +I + W+ V SI A+ + EA ++ S I
Sbjct: 142 VN--IGSIFRNGWENNVKSIDALPYVEAGSNARTSDI 176
>sp|Q7N845|GSA_PHOLL Glutamate-1-semialdehyde 2,1-aminomutase OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=hemL PE=3
SV=1
Length = 427
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 95 RSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYLYTE 154
+S ++A +PL V H + + D + T + + +C ++F L+ +E +YL
Sbjct: 337 KSAKAANIPLVVNHVGGMFGIFFTDAETVTCYQDVMNCDIERFKHFFHLMLDEGVYLAPS 396
Query: 155 AGEQGRLPL 163
A E G + +
Sbjct: 397 AFEAGFMSI 405
>sp|B4TXQ6|GSA_SALSV Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella
schwarzengrund (strain CVM19633) GN=hemL PE=3 SV=1
Length = 426
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDN 173
A E G + + SM + +N
Sbjct: 394 APSAFEAGFMS-VAHSMDDINN 414
>sp|B5RHE0|GSA_SALG2 Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella gallinarum
(strain 287/91 / NCTC 13346) GN=hemL PE=3 SV=1
Length = 426
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEDANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|B5FJ01|GSA_SALDC Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella dublin
(strain CT_02021853) GN=hemL PE=3 SV=1
Length = 426
Score = 36.6 bits (83), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDN 173
A E G + + SM + +N
Sbjct: 394 APSAFEAGFMS-VAHSMDDINN 414
>sp|Q8Z9B4|GSA_SALTI Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella typhi
GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDN 173
A E G + + SM + +N
Sbjct: 394 APSAFEAGFMS-VAHSMDDINN 414
>sp|B5F8R5|GSA_SALA4 Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella agona
(strain SL483) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDN 173
A E G + + SM + +N
Sbjct: 394 APSAFEAGFMS-VAHSMDDINN 414
>sp|A9N0P9|GSA_SALPB Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTYYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|P00632|ELH2_ACIAD 3-oxoadipate enol-lactonase 2 OS=Acinetobacter sp. (strain ADP1)
GN=catD PE=1 SV=3
Length = 267
Score = 36.2 bits (82), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 48/226 (21%)
Query: 175 NRPAVVFLHST-RKCKEWLRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDALVSSWK 233
+RPA++F +S W + + AY Y I D+R HG ++ YR
Sbjct: 26 DRPALIFSNSLGTNLSMWQQQI--AYFQDKYFVICYDTRGHGASSTPVGPYR-------- 75
Query: 234 NGDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKVIVPI 293
I D+I L D+L + G S+GG+ + A + I
Sbjct: 76 -------IDQLGTDVIALLDHL------QIPQATFCGISMGGLTGQWLAIHFPERFNQVI 122
Query: 294 IGVQGFRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDK-----------EVVEKVWDR 342
+ + E WQAR ++ E+ T + ++ + E+VEK+
Sbjct: 123 VANTAAKIG-EAQAWQARAQLVR---EQGLTPIAQTAATRWFTPGFIEDSPEIVEKLSHD 178
Query: 343 IAPGLASQFDSPYTIPA---IAPR------PLLIINGAEDPRCPLA 379
+A G A + S A + P+ P+L+I GA+DP +A
Sbjct: 179 LAQGSAEGYASCCEALAEADVRPQLQRISIPVLVIAGAQDPVTTVA 224
>sp|B4SUY4|GSA_SALNS Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella newport
(strain SL254) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|B5R3G6|GSA_SALEP Glutamate-1-semialdehyde 2,1-aminomutase OS=Salmonella enteritidis
PT4 (strain P125109) GN=hemL PE=3 SV=1
Length = 426
Score = 36.2 bits (82), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + A +PL V H + + D + T + + +C + F L+ EE +YL
Sbjct: 334 GLLEAAEEANIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPLLILSMKESDNEN 175
A E G + ++ E D N
Sbjct: 394 APSAFEAG---FMSVAHSEEDINN 414
>sp|A1WYL3|GSA_HALHL Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=hemL PE=3 SV=1
Length = 426
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 99 SAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYLYTEAGEQ 158
+A +PL A + + DD P T E +++C F + +E +YL A E
Sbjct: 341 AAGIPLATNQAGSMFGLFFTDDAPVTRFEQVKACDLDAFNRFFHAMLDEGVYLAPAAFEA 400
Query: 159 GRLPLLILSMKESDN 173
G +S+ DN
Sbjct: 401 G-----FVSLAHDDN 410
>sp|A4W6Q1|GSA_ENT38 Glutamate-1-semialdehyde 2,1-aminomutase OS=Enterobacter sp.
(strain 638) GN=hemL PE=3 SV=1
Length = 426
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 29/72 (40%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + VPL V H + + D K T + + C + F L+ EE +YL
Sbjct: 334 GLLEAAEETGVPLVVNHVGGMFGIFFTDAKTVTCYQDVVKCDVERFKRFFHLMLEEGVYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + +
Sbjct: 394 APSAFEAGFMSV 405
>sp|C5BAP9|GSA_EDWI9 Glutamate-1-semialdehyde 2,1-aminomutase OS=Edwardsiella ictaluri
(strain 93-146) GN=hemL PE=3 SV=1
Length = 427
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%)
Query: 92 NFLRSKRSAEVPLTVEHAQPVLNPLYQDDKPPTNSEAMESCPKANVENFKKLLKEENLYL 151
L + R ++PL V H + + D T + + C + F L+ E+ +YL
Sbjct: 334 GLLAAAREEKIPLVVNHVGGMFGIFFTDQPSVTCYQDVLRCDAERFKRFFHLMLEQGIYL 393
Query: 152 YTEAGEQGRLPL 163
A E G + L
Sbjct: 394 APSAFEAGFMSL 405
>sp|Q5ZJL8|ABHDD_CHICK Alpha/beta hydrolase domain-containing protein 13 OS=Gallus gallus
GN=ABHD13 PE=2 SV=1
Length = 337
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKV 289
DY+ R D+D T+I + G SLGG A + A++ +++
Sbjct: 174 DYVMTRSDLDKTKIFLFGRSLGGAVAIHLASENSHRI 210
>sp|Q6IRP4|ABHDD_XENLA Alpha/beta hydrolase domain-containing protein 13 OS=Xenopus laevis
GN=abhd13 PE=2 SV=1
Length = 336
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKVIVPII 294
DY+ R DID T+I + G SLGG A + A++ +++ ++
Sbjct: 174 DYVMTRPDIDKTKIILFGRSLGGAVAIHLASENAHRICALVL 215
>sp|Q6A6K6|RPOB_PROAC DNA-directed RNA polymerase subunit beta OS=Propionibacterium acnes
(strain KPA171202 / DSM 16379) GN=rpoB PE=3 SV=1
Length = 1159
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 296 VQGFRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKVWDRIAP 345
V+ F W + N+ WQ+RV A E RTD+ K +E++++ I+P
Sbjct: 40 VESFNWLVGNEIWQSRV---DAALAEGRTDINT----KSGLEEIFEEISP 82
>sp|A0LRL3|RPOB_ACIC1 DNA-directed RNA polymerase subunit beta OS=Acidothermus
cellulolyticus (strain ATCC 43068 / 11B) GN=rpoB PE=3
SV=1
Length = 1169
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 296 VQGFRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKV 339
++ F W + ND W+ARV +A RTD+ S+ +E+ E++
Sbjct: 49 IESFDWLVGNDAWKARV---EAALAAGRTDVNTSSGLEEIFEEI 89
>sp|Q7L211|ABHDD_HUMAN Alpha/beta hydrolase domain-containing protein 13 OS=Homo sapiens
GN=ABHD13 PE=1 SV=1
Length = 337
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKV 289
DY+ R D+D T+I + G SLGG A + A++ +++
Sbjct: 174 DYVMTRPDLDKTKIFLFGRSLGGAVAIHLASENSHRI 210
>sp|Q6ACX5|RPOB_LEIXX DNA-directed RNA polymerase subunit beta OS=Leifsonia xyli subsp.
xyli (strain CTCB07) GN=rpoB PE=3 SV=1
Length = 1165
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 297 QGFRWAIENDKWQARVGSIKAVFEEARTDLGKSTIDKEVVEKV 339
+ F W + ND WQARV + +A + R DL +T +E+ E++
Sbjct: 43 ESFDWLVGNDAWQARVAAAEA---QGRQDLPAATGLEEIFEEI 82
>sp|Q80UX8|ABHDD_MOUSE Alpha/beta hydrolase domain-containing protein 13 OS=Mus musculus
GN=Abhd13 PE=2 SV=1
Length = 337
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 253 DYLTQREDIDPTRIGITGESLGGMHAWYAAADTRYKV 289
DY+ R D+D T++ + G SLGG A + A++ +++
Sbjct: 174 DYVMTRPDLDKTKVFLFGRSLGGAVAIHLASENSHRI 210
>sp|P46209|USF_AQUPY Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
Length = 231
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 23/117 (19%)
Query: 177 PAVVFLHSTRKCKEW---------LRPLLEAYASRGYIAIGIDSRYHGERASSKTTYRDA 227
P V+ +H EW ++ + + +A G++A D Y G+ A +
Sbjct: 26 PGVIVIH------EWWGLESPLSNIKEICDRFAQEGFVAFAPDF-YEGKYADNPDDAGKL 78
Query: 228 LVSSWKN-GDTMPFIFDTAWDLIKLADYLTQREDIDPTRIGITGESLGGMHAWYAAA 283
+ ++N D + IF + D +K Y + P ++G+TG GG + Y A
Sbjct: 79 MTDMFENRMDKVDAIFKASVDFLKECRYTS------PKKVGVTGFCCGGTLSMYFAG 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,000,809
Number of Sequences: 539616
Number of extensions: 7496907
Number of successful extensions: 18881
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 18851
Number of HSP's gapped (non-prelim): 43
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)