Query 014020
Match_columns 432
No_of_seqs 146 out of 732
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 01:04:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 2E-121 5E-126 960.5 40.5 417 1-422 1-418 (497)
2 PLN02362 hexokinase 100.0 4E-120 9E-125 953.5 39.6 417 1-422 1-417 (509)
3 PLN02596 hexokinase-like 100.0 2E-119 4E-124 944.4 40.6 415 1-422 2-418 (490)
4 PLN02914 hexokinase 100.0 2E-116 5E-121 920.8 39.9 401 16-421 8-415 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 2E-106 5E-111 835.7 33.2 384 28-422 16-403 (474)
6 PTZ00107 hexokinase; Provision 100.0 6E-105 1E-109 832.7 37.5 363 39-422 7-396 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 3E-92 6.6E-97 714.9 31.8 378 35-421 13-395 (466)
8 PF00349 Hexokinase_1: Hexokin 100.0 1E-61 2.3E-66 460.1 20.9 202 38-244 2-206 (206)
9 PF03727 Hexokinase_2: Hexokin 100.0 3.9E-49 8.5E-54 382.4 14.0 171 246-423 1-174 (243)
10 PRK09698 D-allose kinase; Prov 98.4 8.4E-06 1.8E-10 80.9 15.4 143 96-264 3-148 (302)
11 PRK13311 N-acetyl-D-glucosamin 98.1 6.2E-05 1.3E-09 73.4 15.1 136 99-264 2-141 (256)
12 PRK12408 glucokinase; Provisio 98.0 5.4E-05 1.2E-09 77.1 13.0 193 91-332 9-220 (336)
13 TIGR00744 ROK_glcA_fam ROK fam 97.9 0.00037 7.9E-09 69.6 15.1 136 100-264 1-142 (318)
14 PRK13310 N-acetyl-D-glucosamin 97.9 0.00033 7.1E-09 69.7 14.7 136 99-264 2-141 (303)
15 PTZ00288 glucokinase 1; Provis 97.8 0.00056 1.2E-08 71.8 15.8 222 61-331 5-271 (405)
16 COG1940 NagC Transcriptional r 97.8 0.00044 9.5E-09 69.0 14.2 165 95-288 4-175 (314)
17 PRK05082 N-acetylmannosamine k 97.6 0.0012 2.6E-08 65.2 14.4 135 99-264 3-140 (291)
18 PRK09557 fructokinase; Reviewe 97.6 0.0017 3.8E-08 64.5 15.3 134 99-264 2-141 (301)
19 PF00480 ROK: ROK family; Int 97.6 0.0013 2.8E-08 60.0 12.6 130 101-264 1-136 (179)
20 PRK14101 bifunctional glucokin 97.5 0.00058 1.3E-08 75.3 11.7 185 95-332 16-217 (638)
21 PRK00292 glk glucokinase; Prov 97.4 0.0024 5.2E-08 64.1 12.9 182 98-331 3-201 (316)
22 TIGR00749 glk glucokinase, pro 96.9 0.0061 1.3E-07 61.4 10.5 184 100-332 1-202 (316)
23 PF02685 Glucokinase: Glucokin 96.6 0.0061 1.3E-07 62.1 8.0 184 100-331 1-201 (316)
24 smart00732 YqgFc Likely ribonu 96.5 0.0044 9.6E-08 51.1 5.2 48 98-155 2-49 (99)
25 PF00370 FGGY_N: FGGY family o 95.0 0.11 2.3E-06 50.0 8.5 59 99-160 2-63 (245)
26 PF01869 BcrAD_BadFG: BadF/Bad 94.9 0.7 1.5E-05 45.2 14.0 136 100-290 1-137 (271)
27 TIGR01315 5C_CHO_kinase FGGY-f 92.3 0.66 1.4E-05 50.4 9.4 60 99-161 2-64 (541)
28 COG0837 Glk Glucokinase [Carbo 92.0 8.2 0.00018 39.4 15.9 184 97-331 6-205 (320)
29 KOG1794 N-Acetylglucosamine ki 91.4 1.6 3.5E-05 44.2 10.2 136 96-266 2-140 (336)
30 COG2971 Predicted N-acetylgluc 91.3 2.7 6E-05 42.7 11.8 126 98-263 6-132 (301)
31 TIGR01314 gntK_FGGY gluconate 90.6 0.77 1.7E-05 49.3 7.7 59 99-160 2-63 (505)
32 TIGR01311 glycerol_kin glycero 90.6 0.67 1.5E-05 49.5 7.2 60 99-161 3-65 (493)
33 PRK10939 autoinducer-2 (AI-2) 90.1 0.89 1.9E-05 49.0 7.7 61 98-161 4-69 (520)
34 PRK13318 pantothenate kinase; 89.6 4 8.7E-05 40.0 11.2 95 235-338 113-210 (258)
35 PRK00047 glpK glycerol kinase; 89.6 0.86 1.9E-05 48.8 7.0 61 98-161 6-69 (498)
36 TIGR01234 L-ribulokinase L-rib 89.4 1.2 2.5E-05 48.4 8.0 60 99-161 3-77 (536)
37 PRK15027 xylulokinase; Provisi 89.2 1.2 2.6E-05 47.6 7.7 59 99-160 2-63 (484)
38 TIGR01312 XylB D-xylulose kina 88.7 1.1 2.3E-05 47.4 6.9 59 100-161 1-62 (481)
39 COG1070 XylB Sugar (pentulose 88.1 1.3 2.8E-05 47.8 7.1 61 98-160 5-68 (502)
40 PRK10331 L-fuculokinase; Provi 88.0 1.6 3.5E-05 46.4 7.8 60 98-160 3-67 (470)
41 PTZ00294 glycerol kinase-like 87.6 1.7 3.6E-05 46.7 7.6 61 98-161 3-66 (504)
42 PLN02295 glycerol kinase 86.6 2.2 4.8E-05 45.9 7.9 60 99-161 2-64 (512)
43 TIGR02628 fuculo_kin_coli L-fu 85.4 2.4 5.2E-05 45.1 7.3 58 99-159 3-65 (465)
44 PRK04123 ribulokinase; Provisi 82.6 4 8.8E-05 44.3 7.7 61 98-161 4-74 (548)
45 PRK13321 pantothenate kinase; 79.5 3.5 7.5E-05 40.5 5.4 17 99-115 2-18 (256)
46 PRK13410 molecular chaperone D 77.4 8.1 0.00018 43.4 8.1 19 97-115 2-20 (668)
47 CHL00094 dnaK heat shock prote 75.6 9.2 0.0002 42.4 7.9 18 98-115 3-20 (621)
48 TIGR01175 pilM type IV pilus a 75.4 25 0.00054 35.5 10.5 101 98-219 4-106 (348)
49 TIGR02627 rhamnulo_kin rhamnul 75.3 4.4 9.6E-05 42.9 5.2 59 100-158 1-63 (454)
50 TIGR01174 ftsA cell division p 75.0 51 0.0011 33.8 12.8 56 99-159 2-59 (371)
51 PRK15080 ethanolamine utilizat 72.4 36 0.00078 33.6 10.5 115 91-240 18-132 (267)
52 PTZ00400 DnaK-type molecular c 70.3 15 0.00032 41.3 8.0 19 97-115 41-59 (663)
53 PRK05183 hscA chaperone protei 68.0 13 0.00029 41.2 7.0 20 96-115 18-37 (616)
54 PRK00290 dnaK molecular chaper 67.3 13 0.00028 41.3 6.7 18 98-115 3-20 (627)
55 PTZ00186 heat shock 70 kDa pre 66.4 16 0.00035 41.1 7.2 33 79-115 13-45 (657)
56 PLN03184 chloroplast Hsp70; Pr 63.3 25 0.00055 39.5 8.1 18 98-115 40-57 (673)
57 KOG2517 Ribulose kinase and re 61.8 60 0.0013 35.6 10.2 96 96-203 5-103 (516)
58 PTZ00009 heat shock 70 kDa pro 61.3 24 0.00051 39.6 7.4 39 97-137 4-42 (653)
59 PLN02669 xylulokinase 54.5 34 0.00074 37.5 7.1 63 89-157 3-81 (556)
60 PRK13324 pantothenate kinase; 53.2 77 0.0017 31.5 8.7 46 99-152 2-47 (258)
61 TIGR02350 prok_dnaK chaperone 52.5 27 0.00059 38.4 5.9 17 99-115 2-18 (595)
62 COG1069 AraB Ribulose kinase [ 52.5 55 0.0012 36.0 8.0 95 98-201 4-103 (544)
63 COG0554 GlpK Glycerol kinase [ 52.1 51 0.0011 35.8 7.6 106 97-216 5-119 (499)
64 TIGR00671 baf pantothenate kin 52.0 1.1E+02 0.0023 30.0 9.5 43 100-151 2-44 (243)
65 PRK13411 molecular chaperone D 51.5 40 0.00087 37.8 7.1 19 97-115 2-20 (653)
66 PRK03657 hypothetical protein; 51.1 56 0.0012 30.6 6.9 67 50-118 71-145 (170)
67 COG4972 PilM Tfp pilus assembl 45.8 1.6E+02 0.0034 30.8 9.7 128 98-227 11-168 (354)
68 TIGR01991 HscA Fe-S protein as 43.5 61 0.0013 35.9 7.0 16 100-115 2-17 (599)
69 TIGR00241 CoA_E_activ CoA-subs 41.0 54 0.0012 31.8 5.4 26 314-339 168-193 (248)
70 COG5146 PanK Pantothenate kina 37.2 1.4E+02 0.0029 30.1 7.4 173 99-306 20-199 (342)
71 KOG3127 Deoxycytidylate deamin 34.9 24 0.00052 34.5 1.8 26 234-259 73-106 (230)
72 PRK10753 transcriptional regul 34.2 91 0.002 25.8 5.0 35 41-75 5-39 (90)
73 PRK00285 ihfA integration host 34.0 89 0.0019 26.0 5.0 36 40-75 6-41 (99)
74 COG0443 DnaK Molecular chapero 33.8 2.1E+02 0.0045 31.8 9.1 175 97-304 5-216 (579)
75 TIGR00987 himA integration hos 33.8 91 0.002 25.9 5.0 36 40-75 5-40 (96)
76 PRK01433 hscA chaperone protei 33.5 1.4E+02 0.0031 33.1 7.9 150 90-256 12-201 (595)
77 PRK13929 rod-share determining 32.8 5.3E+02 0.012 26.1 11.4 46 212-259 116-161 (335)
78 PRK10854 exopolyphosphatase; P 31.5 1.9E+02 0.0042 31.4 8.3 62 98-159 12-75 (513)
79 PF11215 DUF3010: Protein of u 31.5 1.2E+02 0.0026 27.7 5.5 60 99-162 3-62 (138)
80 TIGR03706 exo_poly_only exopol 31.3 1.7E+02 0.0036 29.3 7.3 62 99-160 2-65 (300)
81 COG1546 CinA Uncharacterized p 31.2 1E+02 0.0022 28.8 5.3 67 51-119 66-140 (162)
82 smart00411 BHL bacterial (prok 30.8 1.2E+02 0.0025 24.5 5.1 36 40-75 4-39 (90)
83 PF00216 Bac_DNA_binding: Bact 30.7 1E+02 0.0022 24.7 4.7 36 40-75 4-39 (90)
84 PF02419 PsbL: PsbL protein; 30.6 47 0.001 23.5 2.2 30 308-337 2-31 (37)
85 PRK13411 molecular chaperone D 30.3 1.3E+02 0.0029 33.7 7.0 25 95-119 184-208 (653)
86 TIGR02707 butyr_kinase butyrat 30.2 87 0.0019 32.5 5.2 55 99-161 2-60 (351)
87 PF14574 DUF4445: Domain of un 29.5 1E+02 0.0022 32.8 5.7 19 100-118 4-22 (412)
88 PF05402 PqqD: Coenzyme PQQ sy 28.8 1.3E+02 0.0029 22.8 4.8 34 37-70 30-63 (68)
89 TIGR02350 prok_dnaK chaperone 28.6 1.2E+02 0.0027 33.3 6.4 24 96-119 182-205 (595)
90 PF00012 HSP70: Hsp70 protein; 27.3 99 0.0022 33.5 5.3 25 95-119 186-210 (602)
91 PRK10664 transcriptional regul 26.7 1.5E+02 0.0032 24.6 5.1 36 41-76 5-40 (90)
92 COG3734 DgoK 2-keto-3-deoxy-ga 26.7 53 0.0012 33.5 2.8 22 96-117 4-25 (306)
93 PRK13322 pantothenate kinase; 26.6 2.2E+02 0.0048 27.9 7.1 26 199-224 51-77 (246)
94 PRK00753 psbL photosystem II r 26.4 74 0.0016 22.7 2.6 31 308-338 4-34 (39)
95 PRK03661 hypothetical protein; 26.0 1.3E+02 0.0028 27.9 5.0 67 50-117 65-139 (164)
96 TIGR00199 cinA_cterm competenc 25.8 1.3E+02 0.0029 27.3 5.0 54 50-104 53-114 (146)
97 PRK11031 guanosine pentaphosph 25.0 2.1E+02 0.0044 31.1 7.1 62 98-159 7-70 (496)
98 cd00591 HU_IHF Integration hos 25.0 1.7E+02 0.0037 23.3 5.1 34 41-74 4-37 (87)
99 smart00842 FtsA Cell division 24.9 2.2E+02 0.0049 26.1 6.5 57 99-160 1-59 (187)
100 CHL00094 dnaK heat shock prote 24.7 1.5E+02 0.0032 33.1 6.0 23 97-119 187-209 (621)
101 PTZ00186 heat shock 70 kDa pre 24.6 1.6E+02 0.0034 33.3 6.3 24 96-119 211-234 (657)
102 PF11104 PilM_2: Type IV pilus 24.5 1.5E+02 0.0032 30.1 5.7 59 101-161 1-59 (340)
103 PRK00290 dnaK molecular chaper 24.5 1.4E+02 0.0031 33.1 5.9 23 97-119 185-207 (627)
104 PTZ00009 heat shock 70 kDa pro 24.2 1.6E+02 0.0034 33.1 6.2 24 96-119 193-216 (653)
105 PRK00199 ihfB integration host 24.1 1.8E+02 0.0039 23.9 5.1 35 41-75 5-40 (94)
106 TIGR03123 one_C_unchar_1 proba 23.8 55 0.0012 33.7 2.3 20 96-115 127-146 (318)
107 PRK13410 molecular chaperone D 22.8 1.7E+02 0.0038 33.0 6.2 24 96-119 186-209 (668)
108 CHL00038 psbL photosystem II p 22.6 90 0.0019 22.2 2.4 31 308-338 3-33 (38)
109 PF13941 MutL: MutL protein 22.6 94 0.002 33.6 3.9 30 98-127 1-30 (457)
110 COG2055 Malate/L-lactate dehyd 21.7 1.2E+02 0.0026 31.7 4.2 60 35-97 7-66 (349)
111 PLN03184 chloroplast Hsp70; Pr 21.0 1.8E+02 0.0039 32.8 5.9 24 96-119 223-246 (673)
112 TIGR00988 hip integration host 21.0 2.2E+02 0.0049 23.3 5.1 36 40-75 4-40 (94)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=2.4e-121 Score=960.46 Aligned_cols=417 Identities=58% Similarity=0.919 Sum_probs=383.8
Q ss_pred CCccceeeeeeehhhhhhhhhheeeechhhhchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 014020 1 MGRRGVVAVAAVGVAVAACVVAGVVVGKRVKSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKL 80 (432)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l 80 (432)
|||.. +++++++++++|+++++..+++.+.+++|.++.+++++++++|.+|.++|++|+++|.+||++||+++++|++
T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l 78 (497)
T PLN02405 1 MGKVA--VGAAVVCAAAVCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKL 78 (497)
T ss_pred CCcee--eehhhhhHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 66633 4555666666677777888888877788889999999999999999999999999999999999998766899
Q ss_pred ceeecccccCCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhh
Q 014020 81 KMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 81 ~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
+||||||+++|+|+|+|+|||||||||||||++|+|+|++..+..+++++++||+++|.+++++||||||+||++|++++
T Consensus 79 ~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 79 KMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred ceeccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988766666667779999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcc
Q 014020 161 GNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG 240 (432)
Q Consensus 161 ~~~~~~~~~~~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ 240 (432)
+.+.....++++||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|+|++|+|+||||||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~ 238 (497)
T PLN02405 159 GEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGG 238 (497)
T ss_pred ccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHh
Confidence 64332223467999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhccCCCCCCceeeecc
Q 014020 241 HYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 320 (432)
Q Consensus 241 ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmi 320 (432)
+|.+++|.||+|+|||||+||+|++++||||++..+..++||||||||+||++++|+|+||+++|++|.|||+|+|||||
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (497)
T PLN02405 239 RYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKII 318 (497)
T ss_pred hcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHH
Confidence 99999999999999999999999999999998765667889999999999988999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhhcCCCCC-CCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 014020 321 SGMYLGDIVRRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQ 399 (432)
Q Consensus 321 SG~YLGEivR~iL~~l~~~~~lF~-~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i 399 (432)
||||||||+|+||++|++++.||+ ..|++|.+||+|+|++||.|+.|++++++.++++|++.|++++++.+|+++||+|
T Consensus 319 SG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i 398 (497)
T PLN02405 319 SGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVEL 398 (497)
T ss_pred hhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999999999999999999998 7899999999999999999999999999999999999999988888999999999
Q ss_pred hhHhhhhhhchHHHHHHHhhhHH
Q 014020 400 MNFFFFWVNGITWLMQSLFCLLY 422 (432)
Q Consensus 400 ~~~V~~r~~~~~~~~~~~~~~~~ 422 (432)
|++|..|++ ||.|+...-+.
T Consensus 399 ~~~V~~RAA---rL~Aa~iaail 418 (497)
T PLN02405 399 CNIVATRGA---RLSAAGIYGIL 418 (497)
T ss_pred HHHHHHHHH---HHHHHHHHHHH
Confidence 999998888 77776655443
No 2
>PLN02362 hexokinase
Probab=100.00 E-value=4.1e-120 Score=953.46 Aligned_cols=417 Identities=78% Similarity=1.154 Sum_probs=382.9
Q ss_pred CCccceeeeeeehhhhhhhhhheeeechhhhchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 014020 1 MGRRGVVAVAAVGVAVAACVVAGVVVGKRVKSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKL 80 (432)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l 80 (432)
|||.. +++++++++++|+++++..+++.+..++|.++++++++++++|.+|.++|++|+++|++||++||+++++|++
T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l 78 (509)
T PLN02362 1 MGKVA--VGLAAAAAVAACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKL 78 (509)
T ss_pred CCcee--eehhhhHHHHHHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 66643 3445566666666777788888877788889999999999999999999999999999999999998666899
Q ss_pred ceeecccccCCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhh
Q 014020 81 KMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 81 ~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
+||||||+++|+|+|+|+|||||||||||||++|+|+|++.....+++++|+||+++|.+++++||||||+||++|++++
T Consensus 79 ~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~ 158 (509)
T PLN02362 79 KMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKE 158 (509)
T ss_pred ceecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988766565556668999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcc
Q 014020 161 GNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG 240 (432)
Q Consensus 161 ~~~~~~~~~~~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ 240 (432)
+...+....+++||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||+|+
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~ 238 (509)
T PLN02362 159 ENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALG 238 (509)
T ss_pred CccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhh
Confidence 64322223457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhccCCCCCCceeeecc
Q 014020 241 HYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 320 (432)
Q Consensus 241 ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmi 320 (432)
+|.+|+|.||+|+|||||+||+|+.++|+|+++..+..++||||||||+|+++++|+|+||+++|++|.|||+|+|||||
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (509)
T PLN02362 239 HYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 318 (509)
T ss_pred hcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHH
Confidence 99999999999999999999999999999998765667889999999999988999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHhhcCCCCCCCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHh
Q 014020 321 SGMYLGDIVRRVILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQM 400 (432)
Q Consensus 321 SG~YLGEivR~iL~~l~~~~~lF~~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i~ 400 (432)
||||||||+|+||++|++++.||+..|++|.+||+|+|++||.|+.|++++++.++++|++.+|++.++.+|+++||+||
T Consensus 319 SG~YLGEivRlvL~~l~~~~~lF~~~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i~ 398 (509)
T PLN02362 319 SGMYLGDIVRRVILRMSQESDIFGPVSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKIC 398 (509)
T ss_pred hhccHHHHHHHHHHHHHhccccccCCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999988999999999999999999999999999999999999999889999999999999
Q ss_pred hHhhhhhhchHHHHHHHhhhHH
Q 014020 401 NFFFFWVNGITWLMQSLFCLLY 422 (432)
Q Consensus 401 ~~V~~r~~~~~~~~~~~~~~~~ 422 (432)
++|..|++ ||.|+..+-+.
T Consensus 399 ~~V~~RaA---rL~Aa~iaail 417 (509)
T PLN02362 399 DVVTRRAA---RLAAAGIVGIL 417 (509)
T ss_pred HHHHHHHH---HHHHHHHHHHH
Confidence 99999988 78777665544
No 3
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.7e-119 Score=944.37 Aligned_cols=415 Identities=42% Similarity=0.696 Sum_probs=382.5
Q ss_pred CCccceeeeeeehhhhhhhhhheeeechhh-hchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 014020 1 MGRRGVVAVAAVGVAVAACVVAGVVVGKRV-KSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSK 79 (432)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~ 79 (432)
|||.. ++++++|++++|+++ +.++||. +++.+|+++++++++|++.|.+|.++|++|+++|.+||++||+++++|+
T Consensus 2 ~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~ 78 (490)
T PLN02596 2 MRKEV--VVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTT 78 (490)
T ss_pred Cccee--eehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 66643 455567777778777 8888887 6778999999999999999999999999999999999999998766689
Q ss_pred cceeecccccCCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHh
Q 014020 80 LKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEK 159 (432)
Q Consensus 80 l~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~ 159 (432)
++||||||+++|+|+|+|+|||||||||||||++|+|.|++..+..+.+++|+||++++.+++++||||||+||++|+++
T Consensus 79 l~MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~ 158 (490)
T PLN02596 79 LNMLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAE 158 (490)
T ss_pred CceecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765555666677899999999999999999999999999998
Q ss_pred hCCCCCCCCCcccccceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhc
Q 014020 160 EGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLAL 239 (432)
Q Consensus 160 ~~~~~~~~~~~~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla 239 (432)
++.......++++||||||||||+|+++++|+|++| |||++++++|+||+++|++|++|+|++++|+||||||||||+|
T Consensus 159 ~~~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~W-KgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a 237 (490)
T PLN02596 159 HPGDEADTPERVKKLGFTVSYPVDQAAASSGSAIKW-KSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAG 237 (490)
T ss_pred hccccccCcccccccceEEeeeeeecCCCCEEEEEe-ccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHh
Confidence 764332223457999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ccccCCcceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhccCCCCCCceeeec
Q 014020 240 GHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKM 319 (432)
Q Consensus 240 ~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPG~q~fEKm 319 (432)
++|.+++|.||+|+|||||+||+|++++|+|+++..+..++||||||||+|+..++|+|+||+++|++|.|||+|+||||
T Consensus 238 ~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKM 317 (490)
T PLN02596 238 GRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKL 317 (490)
T ss_pred hhcCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHH
Confidence 99999999999999999999999999999999876566788999999999987789999999999999999999999999
Q ss_pred ccccchHHHHHHHHHHHhhcCCCCC-CCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHH
Q 014020 320 ISGMYLGDIVRRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVH 398 (432)
Q Consensus 320 iSG~YLGEivR~iL~~l~~~~~lF~-~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~ 398 (432)
|||||||||+|+||++|++++.||+ ..|++|.++|+|+|++||.|+.|++++++.++++|++.|++++++.+|+++||+
T Consensus 318 iSG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~ 397 (490)
T PLN02596 318 TSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAE 397 (490)
T ss_pred HhhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999999999999999998 789999999999999999999999999999999999999998899999999999
Q ss_pred HhhHhhhhhhchHHHHHHHhhhHH
Q 014020 399 QMNFFFFWVNGITWLMQSLFCLLY 422 (432)
Q Consensus 399 i~~~V~~r~~~~~~~~~~~~~~~~ 422 (432)
||++|..|++ ||.|+...-+.
T Consensus 398 i~~~V~~RAA---rL~Aa~iaail 418 (490)
T PLN02596 398 VCDIVAERGA---RLAGAGIVGII 418 (490)
T ss_pred HHHHHHHHHH---HHHHHHHHHHH
Confidence 9999988887 88887766554
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=2.3e-116 Score=920.77 Aligned_cols=401 Identities=52% Similarity=0.822 Sum_probs=365.3
Q ss_pred hhhhhhheeeechhhhchh------hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeeccccc
Q 014020 16 VAACVVAGVVVGKRVKSRR------KWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDN 89 (432)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlPTyv~~ 89 (432)
+++...+.+..+++.+++. ...++.+++++++++|.+|.++|++|+++|.+||++||+++++|+++||||||.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~ 87 (490)
T PLN02914 8 TPAIGSFTFSSRPRRRPRSRMAVRSNAVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDS 87 (490)
T ss_pred ccCccceEEecCcccCccHHHHHHHhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCC
Confidence 3445555555555543332 3347889999999999999999999999999999999998656899999999999
Q ss_pred CCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 014020 90 LPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPI 169 (432)
Q Consensus 90 lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~ 169 (432)
+|+|+|+|+|||||||||||||++|+|++++..+..+.+++++||+++|.+++++||||||+||++|++++....+...+
T Consensus 88 lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~ 167 (490)
T PLN02914 88 LPSGNEKGLFYALDLGGTNFRVLRVQLGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEG 167 (490)
T ss_pred CCCCCeeeEEEEEecCCceEEEEEEEecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCcc
Confidence 99999999999999999999999999988765566667788999999999999999999999999999987643233234
Q ss_pred cccccceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccccCCcceE
Q 014020 170 RRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVA 249 (432)
Q Consensus 170 ~~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~~~~~~i 249 (432)
+.+||||||||||+|+++++|+|++|||||++++++|+||+++|++||+|++++|+|+||||||||||++++|.+++|.|
T Consensus 168 ~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~i 247 (490)
T PLN02914 168 RKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMV 247 (490)
T ss_pred ccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhccCCCCCCceeeecccccchHHHH
Q 014020 250 AVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIV 329 (432)
Q Consensus 250 GlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEiv 329 (432)
|+|+|||||+||+|++++|||+++..+..++|+||||||+|| +++|+|+||+++|++|.|||+|+|||||||||||||+
T Consensus 248 GlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEiv 326 (490)
T PLN02914 248 AVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIV 326 (490)
T ss_pred EEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHH
Confidence 999999999999999999999987555677899999999996 5799999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCC-CCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhHhhhhhh
Q 014020 330 RRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQMNFFFFWVN 408 (432)
Q Consensus 330 R~iL~~l~~~~~lF~-~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i~~~V~~r~~ 408 (432)
|+||++|++++.||+ ..|++|.++|+|+|++||+|++|+++++..++++|++.+++. ++.+|+++||+||++|..|++
T Consensus 327 RlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAA 405 (490)
T PLN02914 327 RRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAVGSILYDVLGVE-ASLSARRRVVEVCDTIVKRGG 405 (490)
T ss_pred HHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 788999999999999999999999999999999999999995 999999999999999999988
Q ss_pred chHHHHHHHhhhH
Q 014020 409 GITWLMQSLFCLL 421 (432)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (432)
||.|+...-+
T Consensus 406 ---rL~Aa~iaai 415 (490)
T PLN02914 406 ---RLAGAGIVGI 415 (490)
T ss_pred ---HHHHHHHHHH
Confidence 7777665543
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-106 Score=835.70 Aligned_cols=384 Identities=43% Similarity=0.659 Sum_probs=351.2
Q ss_pred hhhhchhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCC-CCcceeecccccCCCCCccccEEEEeeCC
Q 014020 28 KRVKSRRKWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGG-SKLKMLLTFVDNLPTGSEKGIYYALDLGG 106 (432)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~-s~l~MlPTyv~~lPtG~E~G~fLAlDlGG 106 (432)
++...+.+++.+.+.++++++.|.+|.++|++|+++|.+||++||+...+ +.++|+||||.++|+|+|+|.||||||||
T Consensus 16 ~~~~~~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGG 95 (474)
T KOG1369|consen 16 MVTAVASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGG 95 (474)
T ss_pred hhhhhhhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCC
Confidence 33334467888999999999999999999999999999999999985443 34999999999999999999999999999
Q ss_pred ceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeeeeeeeecc
Q 014020 107 TNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTS 186 (432)
Q Consensus 107 TNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~qt~ 186 (432)
|||||++|+|++++. ...+..+.|+||+++|.+++++||||||+|+++|+.+++.. + ..++|+||||||||+|++
T Consensus 96 Tn~Rv~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~-~---~~~l~lgFTFSfP~~Q~s 170 (474)
T KOG1369|consen 96 TNFRVLLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLK-G---ASKLPLGFTFSFPCRQTS 170 (474)
T ss_pred CceEEEEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccc-c---ccccccceEEeeeeeecc
Confidence 999999999988765 55666778999999999999999999999999999998753 1 122999999999999999
Q ss_pred CCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHhhhcccccCCcceEEEEeecccceeeEccc
Q 014020 187 VSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERT 265 (432)
Q Consensus 187 i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~v~aivNDTVgTLla~ay~~~~~~iGlIlGTGtNacY~E~~ 265 (432)
+++|+|++|||||++++++|+||+++|++||+|++++ +.|+|++|||||||++|+|.+++|.||+|+|||||+||+|+.
T Consensus 171 i~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~ 250 (474)
T KOG1369|consen 171 IDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDM 250 (474)
T ss_pred cccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeec
Confidence 9999999999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCcEEEEcccCCcCC--CCCCCCcchhhhhccCCCCCCceeeecccccchHHHHHHHHHHHhhcCCCC
Q 014020 266 DAIIKCQGLLTTSGGMVVNMEWGNFWS--SHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSEESDIF 343 (432)
Q Consensus 266 ~~I~k~~~~~~~~~~miINtEwG~fg~--~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~iL~~l~~~~~lF 343 (432)
.+|+|+++..... +||||||||+||+ .++|+|+||..+|++|+|||+|.|||||||||||||||++|+++.+++.||
T Consensus 251 ~~i~k~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf 329 (474)
T KOG1369|consen 251 RNIEKVEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLF 329 (474)
T ss_pred cchhhcccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhh
Confidence 9999999864333 8999999999994 569999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhHhhhhhhchHHHHHHHhhhHH
Q 014020 344 GPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQMNFFFFWVNGITWLMQSLFCLLY 422 (432)
Q Consensus 344 ~~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i~~~V~~r~~~~~~~~~~~~~~~~ 422 (432)
+....+| +|+.|+|+++|+|++|.+++++.+.+ +.+.+|++..+.+||+.|+++|+.|..|++ ||.||-.+.+.
T Consensus 330 ~~~~~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA---~L~aagIaail 403 (474)
T KOG1369|consen 330 GGQSTKL-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAA---RLAAAGIAAIL 403 (474)
T ss_pred ccccccc-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHH
Confidence 9332667 99999999999999999999999999 777799999999999999999999999888 77777655443
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=5.6e-105 Score=832.68 Aligned_cols=363 Identities=36% Similarity=0.562 Sum_probs=328.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCCcceeecccccCCCCCccccEEEEeeCCcee
Q 014020 39 VMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE---------GGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNF 109 (432)
Q Consensus 39 ~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~---------~~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNl 109 (432)
..+.+++++++|.+|.++|++|+++|++||++||+++ ++|+++||||||.++|+|+|+|+|||||||||||
T Consensus 7 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 7 QRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceE
Confidence 4566778888888999999999999999999999875 2588999999999999999999999999999999
Q ss_pred EEEEEEEcCCcceeeeecceeecCCcccccc---------ChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeeee
Q 014020 110 RVLRVQLGGQRSSILSSDVERQPIPPELMTG---------TSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSF 180 (432)
Q Consensus 110 Rv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g---------~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSF 180 (432)
||++|+|.+++. .+..+++++||+++|.+ ++++||||||+||++|++++.+.. ...+.+||||||||
T Consensus 87 RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFSF 162 (464)
T PTZ00107 87 RAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFSF 162 (464)
T ss_pred EEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEee
Confidence 999999987543 32344579999999999 999999999999999999876311 12357999999999
Q ss_pred eeeeccCCceEEEeeccceec-----CCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccccC----CcceEEE
Q 014020 181 PVKQTSVSSGILIKWTKGFAI-----ESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHD----EDTVAAV 251 (432)
Q Consensus 181 P~~qt~i~~g~Li~wtKgF~~-----~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~~----~~~~iGl 251 (432)
||+|+++++|+|++|||||++ ++++|+||+++|++||+|++++|+|+||||||||||+|++|.+ ++|.||+
T Consensus 163 P~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGl 242 (464)
T PTZ00107 163 PCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGV 242 (464)
T ss_pred eeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEE
Confidence 999999999999999999999 9999999999999999999999999999999999999999999 9999999
Q ss_pred EeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhccCCCCCCceeeecccccchHHHHHH
Q 014020 252 IIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRR 331 (432)
Q Consensus 252 IlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~ 331 (432)
|+|||||+||+|+... . +..+.|+||||||+||+ .+|+|+||+++|+.|.|||+|+|||||||||||||+|+
T Consensus 243 IlGTG~NacY~E~~~~-----~--~~~~~~iINtEwG~F~~-~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rl 314 (464)
T PTZ00107 243 IIGTGSNACYFEPEVS-----A--YGYAGTPINMECGNFDS-KLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRR 314 (464)
T ss_pred EEeccccceeeehhhc-----c--CCCCcEEEEeeccccCC-CCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHH
Confidence 9999999999996432 1 23457999999999974 59999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhHhhhhhhchH
Q 014020 332 VILRMSEESDIFGPASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQMNFFFFWVNGIT 411 (432)
Q Consensus 332 iL~~l~~~~~lF~~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i~~~V~~r~~~~~ 411 (432)
||++|++++ .|++|.++++|+|+++|.|++|++++++.++++|++.+++. ++.+|++++|+||++|..|++
T Consensus 315 vl~~l~~~~-----~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA--- 385 (464)
T PTZ00107 315 LIVHLLQLK-----APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAA--- 385 (464)
T ss_pred HHHHHHhcC-----CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHH---
Confidence 999999875 47889999999999999999999999999999999999996 899999999999999999888
Q ss_pred HHHHHHhhhHH
Q 014020 412 WLMQSLFCLLY 422 (432)
Q Consensus 412 ~~~~~~~~~~~ 422 (432)
||.|+...-+.
T Consensus 386 ~L~Aa~iaail 396 (464)
T PTZ00107 386 QLAAAFIAAPA 396 (464)
T ss_pred HHHHHHHHHHH
Confidence 78877665543
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-92 Score=714.87 Aligned_cols=378 Identities=36% Similarity=0.580 Sum_probs=347.0
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCccccEEEEeeCCceeEEEEE
Q 014020 35 KWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRV 114 (432)
Q Consensus 35 ~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V 114 (432)
-|+.+++.+.++++.|.+|.|+|.++.+.|.+||++||+..+++.++|+|+||...|+|+|.|.|||||+||||||||+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 46778899999999999999999999999999999999943334499999999999999999999999999999999999
Q ss_pred EEcCCcceeeeecceeecCCcccccc-ChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeeeeeeeeccCCceEEE
Q 014020 115 QLGGQRSSILSSDVERQPIPPELMTG-TSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILI 193 (432)
Q Consensus 115 ~L~g~~~~~~~~~~~~~~Ip~~~~~g-~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~qt~i~~g~Li 193 (432)
+|+|++...++ +++ +.+|.+.... +.++||+|||++++.|+++++.+. ..+++++|||||||++|+++++|.|+
T Consensus 93 ~l~g~gt~~~~-~sk-s~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIE-QSK-SFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCcccc-cCc-ccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 99877654444 333 4499999877 899999999999999999987543 34689999999999999999999999
Q ss_pred eeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccccCCcceEEEEeecccceeeEcccCCcccccC
Q 014020 194 KWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQG 273 (432)
Q Consensus 194 ~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~ 273 (432)
+|||||++++++|+||+++|+++|+++++|++|+||+|||||||||+.|.++++.||+|+|||||+||+|+.+.|||++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-CCCCCcEEEEcccCCcCCCC--CCCCcchhhhhccCCCCCCceeeecccccchHHHHHHHHHHHhhcCCCCC-CCccc
Q 014020 274 L-LTTSGGMVVNMEWGNFWSSH--LPRTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSEESDIFG-PASSR 349 (432)
Q Consensus 274 ~-~~~~~~miINtEwG~fg~~~--lp~T~~D~~lD~~S~nPG~q~fEKmiSG~YLGEivR~iL~~l~~~~~lF~-~~~~~ 349 (432)
+ .+...+|+||+|||+|++.+ +|+|+||..+|++|++||.|.||||+||+|||||+|++|+++..++.+|. ..|++
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~ 327 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEK 327 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhh
Confidence 3 45677899999999998655 99999999999999999999999999999999999999999999999998 88999
Q ss_pred cccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhHhhhhhhchHHHHHHHhhhH
Q 014020 350 LSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQMNFFFFWVNGITWLMQSLFCLL 421 (432)
Q Consensus 350 l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i~~~V~~r~~~~~~~~~~~~~~~ 421 (432)
+..|+.++|+.+|.|+.|+++.++.+...+.+.|+++ .|.++++.++.+|++|..|++| |.|...+.+
T Consensus 328 ~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAAr---laa~~iaAi 395 (466)
T COG5026 328 LTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAP-TTKEERKLIRRLVELIGRRAAR---LAAVPIAAI 395 (466)
T ss_pred cccceeeecchhhhhccccccccchhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHH---HHhhhHHHh
Confidence 9999999999999999999999999999999989996 9999999999999999999995 444444433
No 8
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=1e-61 Score=460.09 Aligned_cols=202 Identities=47% Similarity=0.772 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCC--CCcceeecccccCCCCCccccEEEEeeCCceeEEEEEE
Q 014020 38 RVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGG--SKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 38 ~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~--s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V~ 115 (432)
+..+.++++.+.|.+|.++|++|+++|++||+.||+++++ ++++||||||+++|+|+|+|+|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 4668888999999999999999999999999999997653 24999999999999999999999999999999999999
Q ss_pred EcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeeeeeeeeccCCceEEEee
Q 014020 116 LGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFPVKQTSVSSGILIKW 195 (432)
Q Consensus 116 L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~qt~i~~g~Li~w 195 (432)
|.+++. .+..+++|+||++++.+++++||||||+||++|+++++.. ..++++||||||||||+|+++++|+|++|
T Consensus 82 L~g~~~--~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGK--VEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSE--EEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCC--ceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 987753 3334467999999999999999999999999999988642 13578999999999999999999999999
Q ss_pred ccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHhhhcccccC
Q 014020 196 TKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHD 244 (432)
Q Consensus 196 tKgF~~~~~~G~dv~~lL~~al~r~~l~-v~v~aivNDTVgTLla~ay~~ 244 (432)
||||++++++|+|++++|++||+|++++ ++|+||+|||||||||++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 9999999999999999999999999997 999999999999999999975
No 9
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=3.9e-49 Score=382.38 Aligned_cols=171 Identities=37% Similarity=0.646 Sum_probs=152.6
Q ss_pred cceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCC--CCCCCcchhhhhccCCCCCCceeeeccccc
Q 014020 246 DTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSS--HLPRTSYDIDLDAESPNPNDQGFEKMISGM 323 (432)
Q Consensus 246 ~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~--~lp~T~~D~~lD~~S~nPG~q~fEKmiSG~ 323 (432)
+|.||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.+|+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999988 56789999999999653 379999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhcCCCCC-CCccccccCCccCchhhhhhccCCCccHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhH
Q 014020 324 YLGDIVRRVILRMSEESDIFG-PASSRLSMAFILRTPLMAAMHEDDSPELTEVARILNDVLEVDESLVSSLGLFVHQMNF 402 (432)
Q Consensus 324 YLGEivR~iL~~l~~~~~lF~-~~~~~l~~~~~l~T~~ls~i~~d~s~~l~~~~~iL~~~~~~~~~t~~d~~~vr~i~~~ 402 (432)
|||||+|++|+++++++.||+ ..|+.|.++|+|+|++||.|++|+++++..++.+|.+.+++. +|.+|++++|+||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 999999999999999999998 889999999999999999999999999999999999999996 899999999999999
Q ss_pred hhhhhhchHHHHHHHhhhHHH
Q 014020 403 FFFWVNGITWLMQSLFCLLYL 423 (432)
Q Consensus 403 V~~r~~~~~~~~~~~~~~~~~ 423 (432)
|+.|++ +|+|+...-+..
T Consensus 157 V~~RAA---~L~Aa~iaail~ 174 (243)
T PF03727_consen 157 VSTRAA---RLVAAAIAAILN 174 (243)
T ss_dssp HHHHHH---HHHHHHHHHHHH
T ss_pred HHHHhH---HHHHHHHHHHHH
Confidence 999988 898888765543
No 10
>PRK09698 D-allose kinase; Provisional
Probab=98.39 E-value=8.4e-06 Score=80.91 Aligned_cols=143 Identities=17% Similarity=0.269 Sum_probs=93.3
Q ss_pred cccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccc
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELG 175 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 175 (432)
.+.++++|+|||++|++++.+.+. +... ..++.|.. .+.+ .++.+++.|.+++.+.+. +-.-+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~~-------~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAPD-LVSGLGEMIDEYLRRFNA-------RCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cchH-HHHHHHHHHHHHHHHcCC-------CeeEEE
Confidence 457899999999999999988663 3332 23444432 2233 499999999999986531 123344
Q ss_pred eeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccc---cCCcceEEEE
Q 014020 176 FTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY---HDEDTVAAVI 252 (432)
Q Consensus 176 fTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay---~~~~~~iGlI 252 (432)
+.+.-|++. +.|.++. +..+..++..+.++.+.|++.+ ++| +.+.||..+..++-.+ .+++..+.+.
T Consensus 67 ia~pG~vd~---~~g~i~~-~~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~E~~~~~~~~~~~~~v~ 136 (302)
T PRK09698 67 MGFPALVSK---DRRTVIS-TPNLPLTALDLYDLADKLENTL---NCP---VFFSRDVNLQLLWDVKENNLTQQLVLGAY 136 (302)
T ss_pred EeCCcceeC---CCCEEEe-cCCCCccccccCCHHHHHHHHh---CCC---EEEcchHhHHHHHHHHhcCCCCceEEEEE
Confidence 444444553 3444443 3334333456778888887765 444 6688999887665432 2446789999
Q ss_pred eecccceeeEcc
Q 014020 253 IGTGTNACYLER 264 (432)
Q Consensus 253 lGTGtNacY~E~ 264 (432)
+|||.-++++.+
T Consensus 137 lgtGIG~giv~~ 148 (302)
T PRK09698 137 LGTGMGFAVWMN 148 (302)
T ss_pred ecCceEEEEEEC
Confidence 999999999875
No 11
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=98.15 E-value=6.2e-05 Score=73.43 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=90.7
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceee
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 178 (432)
|+++|+|||++|++++.+.++ +... ++++.|. .+.+++.+.+.+.+.++..... ...|..+
T Consensus 2 ~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgv 62 (256)
T PRK13311 2 YYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG----------VQGSVGI 62 (256)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC----------CCceEEE
Confidence 799999999999999988653 3332 2355553 2456788888877777643221 2347777
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhccccc----CCcceEEEEee
Q 014020 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDTVAAVIIG 254 (432)
Q Consensus 179 SFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~----~~~~~iGlIlG 254 (432)
|.|=-- +.+.|++ .++ ..++-.+.++.+.|++.+ ++| +.+-||.-+.-++-.+. +.+..+.+.+|
T Consensus 63 ~~pG~v-d~~~g~i-~~~---~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lg 131 (256)
T PRK13311 63 GIPGLP-NADDGTV-FTA---NVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILG 131 (256)
T ss_pred EecCcE-ECCCCEE-Ecc---CCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEEC
Confidence 777321 1234553 343 233335678888888766 344 66889988777666553 45788999999
Q ss_pred cccceeeEcc
Q 014020 255 TGTNACYLER 264 (432)
Q Consensus 255 TGtNacY~E~ 264 (432)
||.-++.+-+
T Consensus 132 tGiG~giv~~ 141 (256)
T PRK13311 132 TGVGGGLIVN 141 (256)
T ss_pred cCeEEEEEEC
Confidence 9999999864
No 12
>PRK12408 glucokinase; Provisional
Probab=98.05 E-value=5.4e-05 Score=77.14 Aligned_cols=193 Identities=18% Similarity=0.172 Sum_probs=106.5
Q ss_pred CCCCcccc-EEEEeeCCceeEEEEEEEcCCc---ceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCC
Q 014020 91 PTGSEKGI-YYALDLGGTNFRVLRVQLGGQR---SSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEP 166 (432)
Q Consensus 91 PtG~E~G~-fLAlDlGGTNlRv~~V~L~g~~---~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~ 166 (432)
-++-|++. ||++|+||||.|+++|.-++.. ..+.. .+.++-+ ..+.+.+. +.+|+++ ..
T Consensus 9 ~~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~--~~~~~t~------~~~~~~~~----i~~~~~~-~~---- 71 (336)
T PRK12408 9 AVAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLD--YRTYRCA------DYPSLAAI----LADFLAE-CA---- 71 (336)
T ss_pred cccCcccccEEEEEcChhhhheeEEeccCCccccccccc--eeEecCC------CccCHHHH----HHHHHhc-CC----
Confidence 34556664 9999999999999999653321 01111 1223222 11223333 5566554 10
Q ss_pred CCCcccccceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhccccc---
Q 014020 167 PPIRRRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH--- 243 (432)
Q Consensus 167 ~~~~~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~--- 243 (432)
.+.|..+++|=- ..++|++. .+ ..... ...+.|++. +.+..+.+.||.-+.-++-.+.
T Consensus 72 -----~~~~igIg~pG~--~~~~g~v~-~~-nl~w~-----~~~~~l~~~-----~~~~~V~l~ND~naaa~gE~~~~~~ 132 (336)
T PRK12408 72 -----PVRRGVIASAGY--ALDDGRVI-TA-NLPWT-----LSPEQIRAQ-----LGLQAVHLVNDFEAVAYAAPYMEGN 132 (336)
T ss_pred -----CcCEEEEEecCC--ceECCEEE-ec-CCCCc-----cCHHHHHHH-----cCCCeEEEeecHHHHHcccccCCHh
Confidence 235666666653 13456665 22 11111 122334333 2344578899999998887665
Q ss_pred ----------CC-cceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhh-hccCCCC
Q 014020 244 ----------DE-DTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDL-DAESPNP 311 (432)
Q Consensus 244 ----------~~-~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~l-D~~S~nP 311 (432)
+. ...+.+.+|||..++.+.+-. .+....=.|+|...- .|.+.....+ ...-...
T Consensus 133 ~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~GH~~~--~~~~~~~~~l~~~~~~~~ 199 (336)
T PRK12408 133 QVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEAGQAAL--AAASELEMQLLQHLLRTR 199 (336)
T ss_pred HeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCccccccC--CCCCHHHHHHHHHHHhhC
Confidence 22 467888899999999986421 223456677876521 1222111110 0111223
Q ss_pred CCceeeecccccchHHHHHHH
Q 014020 312 NDQGFEKMISGMYLGDIVRRV 332 (432)
Q Consensus 312 G~q~fEKmiSG~YLGEivR~i 332 (432)
|.-.+|...||.-|..+.|..
T Consensus 200 ~~~~~E~~~Sg~gL~~~~~~~ 220 (336)
T PRK12408 200 THVPIEHVLSGPGLLNLYRAL 220 (336)
T ss_pred CceeHhheecHHHHHHHHHHH
Confidence 334689999999998877754
No 13
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.87 E-value=0.00037 Score=69.57 Aligned_cols=136 Identities=22% Similarity=0.331 Sum_probs=91.5
Q ss_pred EEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeee
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 179 (432)
+++|+|||++|++++.+.+. +.... .++.+ .+.+++++.|.+.|.+|+++.+.. ....+|..++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~------~~~i~gIgva 64 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKV------GHEIVAIGIG 64 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCC------ccceEEEEEe
Confidence 57999999999999988653 33322 23333 146789999999999999876421 1245677777
Q ss_pred ee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccc----cCCcceEEEEe
Q 014020 180 FP--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY----HDEDTVAAVII 253 (432)
Q Consensus 180 FP--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay----~~~~~~iGlIl 253 (432)
.| ++. ++|.+ .|+-.+. -.+.|+.+.|++.+ ++| +.+.||+-+..++-.+ .+.+..+.+.+
T Consensus 65 ~pG~vd~---~~g~~-~~~~~~~---w~~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~i 131 (318)
T TIGR00744 65 APGPVNR---QRGTV-YFAVNLD---WKQEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITL 131 (318)
T ss_pred ccccccC---CCCEE-EecCCCC---CCCCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEe
Confidence 76 543 34543 3332222 23456777776644 444 6688999987665443 35678899999
Q ss_pred ecccceeeEcc
Q 014020 254 GTGTNACYLER 264 (432)
Q Consensus 254 GTGtNacY~E~ 264 (432)
|||..++++.+
T Consensus 132 gtGiG~giv~~ 142 (318)
T TIGR00744 132 GTGLGGGIIIN 142 (318)
T ss_pred CCccEEEEEEC
Confidence 99999999864
No 14
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=97.87 E-value=0.00033 Score=69.68 Aligned_cols=136 Identities=20% Similarity=0.309 Sum_probs=89.4
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceee
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 178 (432)
++++|+|||++|++++.+.++ +.... .++.|. .+.+++.+.|++.+.++..... ....+|+.+
T Consensus 2 ~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia~ 64 (303)
T PRK13310 2 YYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIGI 64 (303)
T ss_pred eEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEeC
Confidence 689999999999999988653 33322 344442 2467888888888888764332 112355555
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhccccc----CCcceEEEEee
Q 014020 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDTVAAVIIG 254 (432)
Q Consensus 179 SFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~----~~~~~iGlIlG 254 (432)
.=|++. +.|.+. ++ ..++-.+-++.+.|++.+ ++| +.+-||.-+-.++-.+. +.+..+.+.+|
T Consensus 65 pG~vd~---~~g~~~-~~---~~~~w~~~~l~~~l~~~~---~~p---V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~g 131 (303)
T PRK13310 65 PGMPET---EDGTLY-AA---NVPAASGKPLRADLSARL---GRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILG 131 (303)
T ss_pred CCcccC---CCCEEe-cc---CcccccCCcHHHHHHHHH---CCC---eEEeccHhHHHHHHhhhccccCCCcEEEEEec
Confidence 555653 245443 22 223334567777777655 444 56889998766665442 45788999999
Q ss_pred cccceeeEcc
Q 014020 255 TGTNACYLER 264 (432)
Q Consensus 255 TGtNacY~E~ 264 (432)
||.-++.+.+
T Consensus 132 tGiG~giv~~ 141 (303)
T PRK13310 132 TGVGGGLVFN 141 (303)
T ss_pred CceEEEEEEC
Confidence 9999999875
No 15
>PTZ00288 glucokinase 1; Provisional
Probab=97.81 E-value=0.00056 Score=71.75 Aligned_cols=222 Identities=18% Similarity=0.168 Sum_probs=122.3
Q ss_pred HHHHHHHHHHhhcCCCCCCcceeecccccCCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCcccccc
Q 014020 61 VDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTG 140 (432)
Q Consensus 61 ~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g 140 (432)
...+.+++.+-++++.. |- ..| .+++.|.||||.|+++.++...+....... .+++| +...
T Consensus 5 ~~~~~~~~~~~~~~~~~--------~~-~~~------~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~--~~~~~--~~~~ 65 (405)
T PTZ00288 5 DEIFLEQLAEELKTDAS--------WS-SGP------IFVGCDVGGTNARVGFAREVQHDDSGVHII--YVRFN--VTKT 65 (405)
T ss_pred hHHHHHHHHHHhccCcc--------cc-cCC------eEEEEEecCCceEEEEEeccCCCCCceeEE--EEecc--cccc
Confidence 34566677777765321 11 122 589999999999999999832211111111 12333 2344
Q ss_pred ChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeeeee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHH
Q 014020 141 TSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSFP--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALD 218 (432)
Q Consensus 141 ~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~ 218 (432)
+-.++.+++++-+....+.... -+....+ +|+.| +..-. -.|...+|.-.+..++. ...+
T Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~a-~iAvAGPV~~~~-~~~~~~~~~~~~~lTNl-pw~i--------- 127 (405)
T PTZ00288 66 DIRELLEFFDEVLQKLKKNLSF------IQRVAAG-AISVPGPVTGGQ-LAGPFNNLKGIARLTDY-PVEL--------- 127 (405)
T ss_pred cHHHHHHHHHHHHHHHHhcCcc------ccCcCeE-EEEEeCceeCCE-eeccccccccccccCCC-Cchh---------
Confidence 5677888888877776543210 0122333 77765 43211 11344777766666653 1111
Q ss_pred HcCCCceEEEEEechHHhhhccccc--------------------------------CCcceEEEEeecccceeeEcccC
Q 014020 219 KRGLDMRVAALVNDTVGTLALGHYH--------------------------------DEDTVAAVIIGTGTNACYLERTD 266 (432)
Q Consensus 219 r~~l~v~v~aivNDTVgTLla~ay~--------------------------------~~~~~iGlIlGTGtNacY~E~~~ 266 (432)
++.+-+.++||=.|.=.+.... .....+.+-.|||..+|++.+..
T Consensus 128 ---~~~~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~ 204 (405)
T PTZ00288 128 ---FPPGRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVG 204 (405)
T ss_pred ---cCCCeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCe
Confidence 5666788999976654443221 12234788899999999997422
Q ss_pred CcccccCCCCCCCcEEEEcccCCcCCCCCCCC--cchhhh-hccCCCC--------CCceeeecccccchHHHHHH
Q 014020 267 AIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRT--SYDIDL-DAESPNP--------NDQGFEKMISGMYLGDIVRR 331 (432)
Q Consensus 267 ~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T--~~D~~l-D~~S~nP--------G~q~fEKmiSG~YLGEivR~ 331 (432)
. -.+...+=+|.|...-+..|.+ .+...+ ..-...- ..-.+|.++||+=|-.+.|.
T Consensus 205 l---------~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~ 271 (405)
T PTZ00288 205 V---------SDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAY 271 (405)
T ss_pred e---------cCCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHH
Confidence 1 1234567778876532111323 221211 0000000 12378999999999887775
No 16
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=97.79 E-value=0.00044 Score=69.04 Aligned_cols=165 Identities=23% Similarity=0.345 Sum_probs=104.5
Q ss_pred ccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCccccc
Q 014020 95 EKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRREL 174 (432)
Q Consensus 95 E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~L 174 (432)
+...+++||+|||+++++++.+.++ +.... ..+.|.... .+++.+-|++.+.++++... . ....+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~~--~~~~~~~~~---~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLRE--RIPTPTPDP---EEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEEE--EEecCCCCc---hhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4557999999999999999988664 22222 244444321 25788899999999988753 1 22467
Q ss_pred ceeeeeeeeeccCC---ceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhccccc----CCcc
Q 014020 175 GFTFSFPVKQTSVS---SGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDT 247 (432)
Q Consensus 175 GfTFSFP~~qt~i~---~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~----~~~~ 247 (432)
|+-++-|.....-. ..-.+.|. .+-|+.+.|++.+. +| +.|-||+.+.-++-++. +.+.
T Consensus 69 GIgi~~pg~~~~~~~~~~~~~~~~~--------~~~~l~~~L~~~~~---~P---v~veNDan~aalaE~~~g~~~~~~~ 134 (314)
T COG1940 69 GIGIPGPGDVDNGTVIVPAPNLGWW--------NGVDLAEELEARLG---LP---VFVENDANAAALAEAWFGAGRGIDD 134 (314)
T ss_pred EEEeccceeccCCcEEeecCCCCcc--------ccccHHHHHHHHHC---CC---EEEecHHHHHHHHHHHhCCCCCCCC
Confidence 77777776653311 22222222 24556666666554 44 45569999999988875 3578
Q ss_pred eEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccC
Q 014020 248 VAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWG 288 (432)
Q Consensus 248 ~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG 288 (432)
.+-+.+|||.-++++.+-.-..-..+...+-++|+++-...
T Consensus 135 ~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~ 175 (314)
T COG1940 135 VVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE 175 (314)
T ss_pred EEEEEEccceeEEEEECCEEeecCCCccccccceEECCCCc
Confidence 99999999999999975322111111111235677766553
No 17
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=97.63 E-value=0.0012 Score=65.24 Aligned_cols=135 Identities=18% Similarity=0.250 Sum_probs=87.6
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceee
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 178 (432)
++++|+|||++|+.++.+.+. +... ..++.|.. .+.+++.+.|++.+.++... ...+|+.+
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~--~~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQR--RQIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEE--EEecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999998663 3322 23455432 24567888888888776421 13466666
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccc---cCCcceEEEEeec
Q 014020 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY---HDEDTVAAVIIGT 255 (432)
Q Consensus 179 SFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay---~~~~~~iGlIlGT 255 (432)
.-|++. +....+. ....++..+.|+.+.|++.+ ++| +.+.||..+..++-.+ .+.+..+-+-+||
T Consensus 64 pG~vd~-----~~~~~~~-~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~ 131 (291)
T PRK05082 64 TGIIND-----GILTALN-PHNLGGLLHFPLVQTLEQLT---DLP---TIALNDAQAAAWAEYQALPDDIRNMVFITVST 131 (291)
T ss_pred cccccC-----CeeEEec-CCCCccccCCChHHHHHHHh---CCC---EEEECcHHHHHHHHHHhcCCCCCCEEEEEECC
Confidence 666752 2221111 11122334677777777554 444 5688999988776543 2556788999999
Q ss_pred ccceeeEcc
Q 014020 256 GTNACYLER 264 (432)
Q Consensus 256 GtNacY~E~ 264 (432)
|.-++++-+
T Consensus 132 GiG~giv~~ 140 (291)
T PRK05082 132 GVGGGIVLN 140 (291)
T ss_pred CcceEEEEC
Confidence 999999874
No 18
>PRK09557 fructokinase; Reviewed
Probab=97.61 E-value=0.0017 Score=64.53 Aligned_cols=134 Identities=25% Similarity=0.327 Sum_probs=86.7
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceee
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTF 178 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTF 178 (432)
+|++|+|||++|++++.+.++ +.... .++.|. .+.+++.+.|++.+.++..... ...|...
T Consensus 2 ~lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~----------~~~gIgi 62 (301)
T PRK09557 2 RIGIDLGGTKIEVIALDDAGE---ELFRK--RLPTPR----DDYQQTIEAIATLVDMAEQATG----------QRGTVGV 62 (301)
T ss_pred EEEEEECCCcEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHhhcC----------CceEEEe
Confidence 689999999999999988653 33322 344442 2456788888888877765432 1245555
Q ss_pred eee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccc----cCCcceEEEE
Q 014020 179 SFP--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY----HDEDTVAAVI 252 (432)
Q Consensus 179 SFP--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay----~~~~~~iGlI 252 (432)
+.| ++. ++|++...... -..+.++.+.|++.+ ++| +.+.||..+..++-.+ .+++..+-+.
T Consensus 63 ~~pG~vd~---~~g~i~~~~~~----~~~~~~l~~~l~~~~---~~p---v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~ 129 (301)
T PRK09557 63 GIPGSISP---YTGLVKNANST----WLNGQPLDKDLSARL---NRE---VRLANDANCLAVSEAVDGAAAGKQTVFAVI 129 (301)
T ss_pred cCcccCcC---CCCeEEecCCc----cccCCCHHHHHHHHH---CCC---EEEccchhHHHHHHHHhcccCCCCcEEEEE
Confidence 554 543 34554432211 113567777777766 344 5578999987766544 3456778999
Q ss_pred eecccceeeEcc
Q 014020 253 IGTGTNACYLER 264 (432)
Q Consensus 253 lGTGtNacY~E~ 264 (432)
+|||.-++.+.+
T Consensus 130 igtGiG~giv~~ 141 (301)
T PRK09557 130 IGTGCGAGVAIN 141 (301)
T ss_pred EccceEEEEEEC
Confidence 999999999864
No 19
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=97.57 E-value=0.0013 Score=60.01 Aligned_cols=130 Identities=26% Similarity=0.448 Sum_probs=93.4
Q ss_pred EEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeeee
Q 014020 101 ALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFSF 180 (432)
Q Consensus 101 AlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSF 180 (432)
+||+|+|+++++++.+.++ ++... .+++| .+.+++.+.+.+.+.+++.+.+. . |..+|.
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~---gIgi~~ 59 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYGR--------S---GIGISV 59 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E---EEEEEE
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c---cEEEec
Confidence 5899999999999999663 34332 35555 46788999999999999887641 1 666666
Q ss_pred e--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhccccc----CCcceEEEEee
Q 014020 181 P--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH----DEDTVAAVIIG 254 (432)
Q Consensus 181 P--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~----~~~~~iGlIlG 254 (432)
| ++.. +|.++.... .+..+.++.+.|++.+. + .+.+.||..+..++-.+. +.+..+-+-+|
T Consensus 60 pG~v~~~---~g~i~~~~~----~~~~~~~l~~~l~~~~~---~---pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig 126 (179)
T PF00480_consen 60 PGIVDSE---KGRIISSPN----PGWENIPLKEELEERFG---V---PVIIENDANAAALAEYWFGAAKDCDNFLYLYIG 126 (179)
T ss_dssp SSEEETT---TTEEEECSS----GTGTTCEHHHHHHHHHT---S---EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEES
T ss_pred cccCcCC---CCeEEecCC----CCcccCCHHHHhhcccc---e---EEEEecCCCcceeehhhcCccCCcceEEEEEee
Confidence 6 5552 245554333 44566889999988773 2 477889999877665542 34678889999
Q ss_pred cccceeeEcc
Q 014020 255 TGTNACYLER 264 (432)
Q Consensus 255 TGtNacY~E~ 264 (432)
||.-++++.+
T Consensus 127 ~GiG~~ii~~ 136 (179)
T PF00480_consen 127 TGIGAGIIIN 136 (179)
T ss_dssp SSEEEEEEET
T ss_pred cCCCcceecc
Confidence 9999999863
No 20
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=97.54 E-value=0.00058 Score=75.32 Aligned_cols=185 Identities=18% Similarity=0.198 Sum_probs=96.5
Q ss_pred ccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCccccc
Q 014020 95 EKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRREL 174 (432)
Q Consensus 95 E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~L 174 (432)
.-|-+|++|+||||.|++++. .++ .+... +.++-+. |+.+.+.|.+|+++.+. . .+-
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~--~~g-~i~~~--~~~~t~~----------~~~~~~~i~~~l~~~~~------~--~~~ 72 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET--GPG-EITQI--RVYPGAD----------YPTLTDAIRKYLKDVKI------G--RVN 72 (638)
T ss_pred CCCCEEEEEcCchhheeeeec--CCC-cccce--eEEecCC----------CCCHHHHHHHHHHhcCC------C--Ccc
Confidence 345699999999999999983 222 23222 2233221 24566777777765431 1 234
Q ss_pred ceeeeee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcc--------ccc-
Q 014020 175 GFTFSFP--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG--------HYH- 243 (432)
Q Consensus 175 GfTFSFP--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~--------ay~- 243 (432)
|..++.| ++...+... =+.|. + ++ +.|++. +.+.++.+.||.-+.-++- .+.
T Consensus 73 ~igig~pGpVd~~~~~~~-nl~w~--~--------~~-~~l~~~-----~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G 135 (638)
T PRK14101 73 HAAIAIANPVDGDQVRMT-NHDWS--F--------SI-EATRRA-----LGFDTLLVVNDFTALAMALPGLTDAQRVQVG 135 (638)
T ss_pred eEEEEEecCccCCeeeec-CCCcE--e--------cH-HHHHHH-----cCCCeEEEEchHHHHHcCCccCCHHHeEEeC
Confidence 5555555 653211110 01231 1 22 333333 3455789999999988873 111
Q ss_pred ---CCcceEEEEeec--ccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhh-hccCCCCCCceee
Q 014020 244 ---DEDTVAAVIIGT--GTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDL-DAESPNPNDQGFE 317 (432)
Q Consensus 244 ---~~~~~iGlIlGT--GtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~l-D~~S~nPG~q~fE 317 (432)
..+..+.+++|| |...|-+-.. ..+.++.-+|+|...- .|.+.-...+ .....+.|.-.+|
T Consensus 136 ~g~~~~~~~~~~lGtGTGlG~a~lv~~-----------~g~~~~~g~E~GH~~~--~~~~~~e~~~~~~~~~~~g~~~~E 202 (638)
T PRK14101 136 GGTRRQNSVIGLLGPGTGLGVSGLIPA-----------DDRWIALGSEGGHASF--APQDEREDLVLQYARKKYPHVSFE 202 (638)
T ss_pred CCCCCCCCcEEEEECCccceeeEEEec-----------CCeeEECCCCccccCC--CCCCHHHHHHHHHHHHhcCcceee
Confidence 223457788755 5664433111 1122344568887631 2323211111 0001123445689
Q ss_pred ecccccchHHHHHHH
Q 014020 318 KMISGMYLGDIVRRV 332 (432)
Q Consensus 318 KmiSG~YLGEivR~i 332 (432)
..+||.-|..+.|..
T Consensus 203 ~~~Sg~gL~~~~~~~ 217 (638)
T PRK14101 203 RVCAGPGMEIIYRAL 217 (638)
T ss_pred eecchhhHHHHHHHH
Confidence 999999988877753
No 21
>PRK00292 glk glucokinase; Provisional
Probab=97.38 E-value=0.0024 Score=64.11 Aligned_cols=182 Identities=17% Similarity=0.152 Sum_probs=97.3
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCccccccee
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFT 177 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfT 177 (432)
.+|++|+||||+|+.++++.+. .+... +.++.+. ++.+.+.+.+++++... .-..|..
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~~--~~~~~~~----------~~~~~~~l~~~l~~~~~--------~~~~gig 60 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQI--KTYATAD----------YPSLEDAIRAYLADEHG--------VQVRSAC 60 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceeee--EEEecCC----------CCCHHHHHHHHHHhccC--------CCCceEE
Confidence 3799999999999999987442 22222 2344331 12244555566654110 1235666
Q ss_pred eeee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccc------------c
Q 014020 178 FSFP--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHY------------H 243 (432)
Q Consensus 178 FSFP--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay------------~ 243 (432)
++.| ++.. + +..+ ..... . + .+.|++.+ ++..+.+.||.-+.-++-.+ .
T Consensus 61 Ig~pG~vd~~-----~-i~~~-n~~w~---~-~-~~~l~~~~-----~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~ 123 (316)
T PRK00292 61 FAIAGPVDGD-----E-VRMT-NHHWA---F-S-IAAMKQEL-----GLDHLLLINDFTAQALAIPRLGEEDLVQIGGGE 123 (316)
T ss_pred EEEeCcccCC-----E-EEec-CCCcc---c-C-HHHHHHHh-----CCCeEEEEecHHHHHcccccCCHhheeEeCCCC
Confidence 7775 5431 1 1111 11111 1 1 24444333 34447788999998887643 1
Q ss_pred C--CcceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhh-ccCCCCCCceeeecc
Q 014020 244 D--EDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLD-AESPNPNDQGFEKMI 320 (432)
Q Consensus 244 ~--~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD-~~S~nPG~q~fEKmi 320 (432)
+ .+..+.+.+|||..++.+.+- + .+....-.|+|...- .|...-...+- ..-..-|.-.+|..+
T Consensus 124 ~~~~~~~~~v~~GTGiG~giv~~g-----~------~g~~g~agE~GH~~~--~~~~~~~~~~~~~~c~~~~~gclE~~~ 190 (316)
T PRK00292 124 PVPGAPIAVIGPGTGLGVAGLVPV-----D------GRWIVLPGEGGHVDF--APRSEEEAQILQYLRAEFGHVSAERVL 190 (316)
T ss_pred CCCCCcEEEEEcCCcceEEEEEec-----C------CceEEccCCcccccC--CCCChHHHHHHHHHHHhcCCceeEeee
Confidence 1 256788899999999998641 1 122345667775421 12111100000 000112345799999
Q ss_pred cccchHHHHHH
Q 014020 321 SGMYLGDIVRR 331 (432)
Q Consensus 321 SG~YLGEivR~ 331 (432)
||.=|.++.|.
T Consensus 191 Sg~~L~~~~~~ 201 (316)
T PRK00292 191 SGPGLVNLYRA 201 (316)
T ss_pred cHHhHHHHHHH
Confidence 99988665543
No 22
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=96.93 E-value=0.0061 Score=61.42 Aligned_cols=184 Identities=17% Similarity=0.165 Sum_probs=94.3
Q ss_pred EEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeee
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 179 (432)
|++|+||||.|++++.-.+. .+.+ . +. +. .. .++-+.+.|.+|+++..... .......|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~--~l~~-~-~~---~~---~~----~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG--EISQ-A-KT---YS---GL----DFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC--ceee-e-EE---Ee---cC----CCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 68999999999999964332 1111 1 11 11 01 13455566666666532110 011223677777
Q ss_pred eeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcc--------ccc----CCcc
Q 014020 180 FPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG--------HYH----DEDT 247 (432)
Q Consensus 180 FP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~--------ay~----~~~~ 247 (432)
-|++. +.+ ..+ .... ..++. .|++. +.+..+.|.||.-+.-++- .+. ..+.
T Consensus 64 Gpv~~-----~~v-~~~-nl~w----~~~~~-~l~~~-----~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~ 126 (316)
T TIGR00749 64 CPITG-----DWV-AMT-NHTW----AFSIA-ELKQN-----LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEG 126 (316)
T ss_pred CcccC-----CEE-Eec-CCCC----eeCHH-HHHHh-----cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCC
Confidence 78743 222 111 1111 02332 33332 3344578899998888874 222 2345
Q ss_pred eEEEEe--ecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhh----hhccCCCCCCceeeeccc
Q 014020 248 VAAVII--GTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDID----LDAESPNPNDQGFEKMIS 321 (432)
Q Consensus 248 ~iGlIl--GTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~----lD~~S~nPG~q~fEKmiS 321 (432)
.+.+++ |||...+.+.+.. +.+-...-.|+|...- -|.+.-+.. +.... +.-.+|...|
T Consensus 127 ~~~v~lGtGtG~G~~~vi~~~----------~g~l~~~agE~GH~~~--~~~~~~~~~~~~~l~~~~---~~g~~E~~~S 191 (316)
T TIGR00749 127 KPIAILGAGTGLGVAHLIHQV----------DGRWVVLPGEGGHVDF--APNSELEAIILEYLRAKI---GHVSAERVLS 191 (316)
T ss_pred CcEEEEecCCCceeeEEEEcC----------CCCEEECCCCcccccC--CCCCHHHHHHHHHHHHhc---CCceeeeeec
Confidence 678899 5555555454210 0111234556665421 122211111 11222 3457999999
Q ss_pred ccchHHHHHHH
Q 014020 322 GMYLGDIVRRV 332 (432)
Q Consensus 322 G~YLGEivR~i 332 (432)
|.-|..+.|..
T Consensus 192 g~gl~~~~~~~ 202 (316)
T TIGR00749 192 GPGLVNIYEAL 202 (316)
T ss_pred HHHHHHHHHHH
Confidence 99998888865
No 23
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=96.64 E-value=0.0061 Score=62.06 Aligned_cols=184 Identities=22% Similarity=0.234 Sum_probs=99.6
Q ss_pred EEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccceeee
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFTFS 179 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfTFS 179 (432)
|+-|+||||-|+++++..+...++...+ .|+ ..+...|-+.+++.+++. ... ...|-.-+|+
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~~--~~~------~~~~~s~~~~l~~~l~~~--~~~--------~~~p~~~~ia 62 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDIR--RYP------SADFPSFEDALADYLAEL--DAG--------GPEPDSACIA 62 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEEE--EEE------GCCCCHHHHHHHHHHHHT--CHH--------HTCEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcCCCCccccccE--EEe------cCCcCCHHHHHHHHHHhc--ccC--------CCccceEEEE
Confidence 6789999999999998866432222211 222 233445555555544432 111 1134445665
Q ss_pred ee--eeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhccccc-------------C
Q 014020 180 FP--VKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYH-------------D 244 (432)
Q Consensus 180 FP--~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~-------------~ 244 (432)
.+ +.. ++.++.+|. +.++. +.|. +.+.++-+.++||=.|.=.+.-.. +
T Consensus 63 vAGPV~~---~~~~lTN~~--W~i~~-----------~~l~-~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~ 125 (316)
T PF02685_consen 63 VAGPVRD---GKVRLTNLP--WTIDA-----------DELA-QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPD 125 (316)
T ss_dssp ESS-EET---TCEE-SSSC--CEEEH-----------HHCH-CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESS
T ss_pred EecCccC---CEEEecCCC--ccccH-----------HHHH-HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCC
Confidence 54 554 456666653 33331 2232 233444688999977654433221 1
Q ss_pred CcceEEE-EeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhc-cCCCCCCceeeecccc
Q 014020 245 EDTVAAV-IIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDA-ESPNPNDQGFEKMISG 322 (432)
Q Consensus 245 ~~~~iGl-IlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~-~S~nPG~q~fEKmiSG 322 (432)
++....+ =.|||.+.|++-+. ..+..++-+|.|.-+ .-|+++.+.++=+ -...-|.=.+|..+||
T Consensus 126 ~~~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG 192 (316)
T PF02685_consen 126 PGGPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSG 192 (316)
T ss_dssp TTS-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSH
T ss_pred CCCcEEEEEcCCCcEEEEEEec-----------CCceEeCCCcccccc--CCCCCHHHHHHHHHHHHhcCCceeEeecch
Confidence 2233322 26999999999763 234569999999774 3577766544421 1111155688999999
Q ss_pred cchHHHHHH
Q 014020 323 MYLGDIVRR 331 (432)
Q Consensus 323 ~YLGEivR~ 331 (432)
+=|..|.+-
T Consensus 193 ~GL~~ly~~ 201 (316)
T PF02685_consen 193 RGLENLYRF 201 (316)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 877666554
No 24
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=96.54 E-value=0.0044 Score=51.06 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=29.1
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHH
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQ 155 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~ 155 (432)
.+|++|+|||+.+++++.-.+. +.... .+|.. .+.+++++.+.+.+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~~----~~~~~---~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADPL----EVIPR---TNKEADAARLKKLIKK 49 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecCE----EEEEe---cCcchHHHHHHHHHHH
Confidence 4899999999999999854332 22211 12211 1345667777666554
No 25
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=95.01 E-value=0.11 Score=50.03 Aligned_cols=59 Identities=22% Similarity=0.519 Sum_probs=41.8
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecC--C-ccccccChhHHHHHHHHHHHHHHHhh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--P-PELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
||+||+|.||.|++++.-.+ +++...+.+++. | +.....+.+++++.+.+++++.++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~g---~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~ 63 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG---KIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQA 63 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS---CEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHC
T ss_pred EEEEEEcccceEEEEEeCCC---CEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhc
Confidence 79999999999999998333 234433333332 2 22335578999999999999999876
No 26
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=94.89 E-value=0.7 Score=45.24 Aligned_cols=136 Identities=21% Similarity=0.259 Sum_probs=78.1
Q ss_pred EEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCccccccee-e
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFT-F 178 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfT-F 178 (432)
|.||-|||..|++++..+++ +.... ..-|..+.....++..+-|.+-+.+.+++.+... ..+..+ |
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~~---~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------~~i~~~~~ 67 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGRG---KGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP-------DDIAAICI 67 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEEE---EES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST-------TCCCEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEEE---EeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc-------cccceeee
Confidence 67999999999999976543 33221 2234444333346667777788888887765321 111111 1
Q ss_pred eeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccccCCcceEEEEeecccc
Q 014020 179 SFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTN 258 (432)
Q Consensus 179 SFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~~~~~~iGlIlGTGtN 258 (432)
.. =|+...+...+-..+.+++ -+.+.||.+..|.++.- ..-|-+|-|||++
T Consensus 68 g~----------------aG~~~~~~~~~~~~~~~~~----------~v~~~~Da~~al~~~~~---~~giv~I~GTGS~ 118 (271)
T PF01869_consen 68 GA----------------AGYGRAGDEQEFQEEIVRS----------EVIVVNDAAIALYGATA---EDGIVVIAGTGSI 118 (271)
T ss_dssp EE----------------EEEEETTTTTHHHHHHHHH----------EEEEEEHHHHHHHHHST---SSEEEEEESSSEE
T ss_pred eE----------------eeecCcccccchhhcceEE----------EEEEEHHHHHHhCCCCC---CcEEEEEcCCCce
Confidence 11 1222222111111122222 47788999888777644 3668899999999
Q ss_pred eeeEcccCCcccccCCCCCCCcEEEEcccCCc
Q 014020 259 ACYLERTDAIIKCQGLLTTSGGMVVNMEWGNF 290 (432)
Q Consensus 259 acY~E~~~~I~k~~~~~~~~~~miINtEwG~f 290 (432)
+..+.+ .+++.-.--||.+
T Consensus 119 ~~~~~~-------------~g~~~r~gG~G~~ 137 (271)
T PF01869_consen 119 AYGRDR-------------DGRVIRFGGWGHC 137 (271)
T ss_dssp EEEEET-------------TSEEEEEEESCTT
T ss_pred EEEEEc-------------CCcEEEeCCCCCC
Confidence 998752 2345555557775
No 27
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=92.29 E-value=0.66 Score=50.39 Aligned_cols=60 Identities=20% Similarity=0.329 Sum_probs=42.7
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecC--Cc-cccccChhHHHHHHHHHHHHHHHhhC
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--PP-ELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I--p~-~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
+|+||+|+|+.|++++...|+ ++...+.+++. |+ .....+.+++++-+.+++++.+++.+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~ 64 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESK 64 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999975443 33333333332 22 23455788999999999999988754
No 28
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=92.04 E-value=8.2 Score=39.43 Aligned_cols=184 Identities=19% Similarity=0.220 Sum_probs=104.2
Q ss_pred ccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccce
Q 014020 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGf 176 (432)
...|+=|+||||-|+++|....... .+ . +.+...+ |.-+-+.|.+|+.++.. ..+...-|
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~~~--~~--~------~~~~~~d----ypsle~av~~yl~~~~~------~~~~~a~~ 65 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPAEP--LQ--A------ETYACAD----YPSLEEAVQDYLSEHTA------VAPRSACF 65 (320)
T ss_pred CceEEEecCCcceEEEEeccCCCCc--cc--c------ceecccC----cCCHHHHHHHHHHHhhc------cCccceEE
Confidence 4567779999999999998854211 11 0 2222222 23344556666665521 11122222
Q ss_pred eeeeeeeeccCCceEEEeeccc-eecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcccccC-----------
Q 014020 177 TFSFPVKQTSVSSGILIKWTKG-FAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALGHYHD----------- 244 (432)
Q Consensus 177 TFSFP~~qt~i~~g~Li~wtKg-F~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ay~~----------- 244 (432)
.--=|+.- . -+++|.. |.++ .+=-|+.+.++=+.++||-+|.=++-....
T Consensus 66 AiAgPv~g-----d-~v~lTN~~W~~s------------~~~~r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~ 127 (320)
T COG0837 66 AIAGPIDG-----D-EVRLTNHDWVFS------------IARMRAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGK 127 (320)
T ss_pred EEecCccC-----C-EEeeecCccccc------------HHHHHHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCC
Confidence 22223321 1 3333321 1222 122245566777889999999887766652
Q ss_pred --CcceEEEE-eecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhcc-CCCCCCceeeecc
Q 014020 245 --EDTVAAVI-IGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAE-SPNPNDQGFEKMI 320 (432)
Q Consensus 245 --~~~~iGlI-lGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~-S~nPG~q~fEKmi 320 (432)
++..+++| =|||--.|++-+. ..+-..+-+|=|.-+ .-|+|+-|..+=+. ..+-|.-.=|..+
T Consensus 128 ~~~~a~~avlGPGTGLGVa~Lv~~-----------~~~w~~lp~EGGHvd--f~P~~~~E~~i~~~l~~~~GrVS~Er~L 194 (320)
T COG0837 128 PEPNAPRAVLGPGTGLGVAGLVPN-----------GGGWIPLPGEGGHVD--FAPRSEREFQILEYLRARFGRVSAERVL 194 (320)
T ss_pred CCCCCceEEEcCCCCcceEEEEec-----------CCeeEeccCCCcccc--CCCCCHHHHHHHHHHHHhcCccchhhhc
Confidence 23333322 3566677887653 223577889988763 46889888776432 2345667779999
Q ss_pred cccchHHHHHH
Q 014020 321 SGMYLGDIVRR 331 (432)
Q Consensus 321 SG~YLGEivR~ 331 (432)
||+=|=-|.|-
T Consensus 195 SG~GL~~iY~a 205 (320)
T COG0837 195 SGPGLVNLYRA 205 (320)
T ss_pred ccccHHHHHHH
Confidence 99988666654
No 29
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=91.43 E-value=1.6 Score=44.24 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=74.2
Q ss_pred cccEEEEeeCCceeEEEEEEEcCCcc-eeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCc-ccc
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQRS-SILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIR-RRE 173 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~~~-~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~-~l~ 173 (432)
+|.|..+|=|+|.-|+.+|.=.++.. +..-...-.|-||. +-+|+.|++.+.+..+.....+.. -..
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~~~~~a~~~~Tnh~~ig~-----------~~~~~rie~~i~~A~~k~g~d~~~~lr~ 70 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGTILGRAVGGGTNHWLIGS-----------TTCASRIEDMIREAKEKAGWDKKGPLRS 70 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCCEeeEeeccccccccCCc-----------hHHHHHHHHHHHHHHhhcCCCccCccce
Confidence 46789999999999999985322110 00100111244542 334555555554432211111111 112
Q ss_pred cceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCC-ceEEEEEechHHhhhcccccCCcceEEEE
Q 014020 174 LGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLD-MRVAALVNDTVGTLALGHYHDEDTVAAVI 252 (432)
Q Consensus 174 LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-v~v~aivNDTVgTLla~ay~~~~~~iGlI 252 (432)
||.- .+++.-.|-++.|.+-+..+-.. .+=..|-||++++|.++ +....--|-+|
T Consensus 71 lgL~-----------------------lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~-t~g~~~GiVLi 126 (336)
T KOG1794|consen 71 LGLG-----------------------LSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAA-TPGGEGGIVLI 126 (336)
T ss_pred eeee-----------------------cccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhc-CCCCCCcEEEE
Confidence 3332 33444455555565655543222 34477889999999988 44445568899
Q ss_pred eecccceeeEcccC
Q 014020 253 IGTGTNACYLERTD 266 (432)
Q Consensus 253 lGTGtNacY~E~~~ 266 (432)
-|||+||=-+.+-.
T Consensus 127 aGTgs~crl~~~DG 140 (336)
T KOG1794|consen 127 AGTGSNCRLVNPDG 140 (336)
T ss_pred ecCCceeEEECCCC
Confidence 99999976555433
No 30
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=91.34 E-value=2.7 Score=42.68 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=77.4
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCccccccee
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGFT 177 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGfT 177 (432)
-||.||=|||.-|..+-..+++ +.-+ -..=|.++.+...++=+.-|.+-|.+.+++.+.. |-.+-
T Consensus 6 ~~lGVDGGGTkt~a~l~~~~g~---vlg~---g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~---------~~~i~ 70 (301)
T COG2971 6 YFLGVDGGGTKTRAVLADEDGN---VLGR---GKSGPANIQLVGKEEAVRNIKDAIREALDEAGLK---------PDEIA 70 (301)
T ss_pred EEEEEccCCcceEEEEEcCCCc---EEEE---eccCCceecccchHHHHHHHHHHHHHHHHhcCCC---------HHHhC
Confidence 5899999999999988765442 3322 1234777776666777888888898888765531 12222
Q ss_pred eeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCce-EEEEEechHHhhhcccccCCcceEEEEeecc
Q 014020 178 FSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMR-VAALVNDTVGTLALGHYHDEDTVAAVIIGTG 256 (432)
Q Consensus 178 FSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~-v~aivNDTVgTLla~ay~~~~~~iGlIlGTG 256 (432)
++.+-- +..|.+.....+ .+ .+.+++- -+-|.||....|.++-..++-+ =+|+|||
T Consensus 71 ~~~agl-------------------a~ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GTG 127 (301)
T COG2971 71 AIVAGL-------------------ALAGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDDGI--IVIAGTG 127 (301)
T ss_pred ceeeee-------------------eccCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCCCE--EEEecCC
Confidence 222211 123344322222 22 4555655 6788999999999885554333 3688999
Q ss_pred cceeeEc
Q 014020 257 TNACYLE 263 (432)
Q Consensus 257 tNacY~E 263 (432)
+ +|+-
T Consensus 128 S--i~~~ 132 (301)
T COG2971 128 S--IGYG 132 (301)
T ss_pred e--EEEE
Confidence 4 4443
No 31
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=90.61 E-value=0.77 Score=49.27 Aligned_cols=59 Identities=15% Similarity=0.340 Sum_probs=41.8
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeec--CC-ccccccChhHHHHHHHHHHHHHHHhh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--IP-PELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~--Ip-~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
+|+||+|+|+.|++++...+ +++...+.+++ .| +.....+.+++++-+.+++++.+++.
T Consensus 2 ~lgiDiGtt~~K~~l~d~~g---~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~ 63 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEENG---KIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL 63 (505)
T ss_pred EEEEeccccceEEEEEcCCC---CEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999997544 24444433344 22 22334568889999999999998764
No 32
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=90.60 E-value=0.67 Score=49.55 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=41.6
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecC--Ccc-ccccChhHHHHHHHHHHHHHHHhhC
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--PPE-LMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I--p~~-~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
+|+||+|+|+.|++++..+++ ++...+.+++. |+. ....+.+++++-+.+++.+.+++.+
T Consensus 3 ~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~ 65 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAG 65 (493)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 789999999999999975442 33333333332 221 1233678899999999999988754
No 33
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=90.10 E-value=0.89 Score=49.01 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=43.4
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCC-----ccccccChhHHHHHHHHHHHHHHHhhC
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIP-----PELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip-----~~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
-+|+||+|.|+.|++++...|+ ++...+.+|+.+ +.....+.+++++-+.+++.+.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999986543 333333344322 223355788999999999999987643
No 34
>PRK13318 pantothenate kinase; Reviewed
Probab=89.63 E-value=4 Score=40.00 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=47.0
Q ss_pred HhhhcccccCCcceEEEEeecccceeeEcccCCcccccCC-CCCCCcEEEEcccCCcCCCCCCCCcchhhhhccCCCCCC
Q 014020 235 GTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGL-LTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPND 313 (432)
Q Consensus 235 gTLla~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~-~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~~S~nPG~ 313 (432)
+.+++++...+...+-+-+||++-...+.+-.. +.+. .-+.-.+-.|+=... ...||..+.+. ....+|.
T Consensus 113 a~~~aa~~~~~~~~ivid~GTA~t~d~v~~~g~---~~GG~I~PG~~l~~~aL~~~--ta~Lp~~~~~~----~~~~~g~ 183 (258)
T PRK13318 113 VNAVAAYELYGGPLIVVDFGTATTFDVVSAKGE---YLGGVIAPGINISADALFQR--AAKLPRVEITK----PDSVIGK 183 (258)
T ss_pred HHHHHHHHHcCCCEEEEEcCCceEEEEEcCCCc---EEEEEECccHHHHHHHHHhh--hhcCCCCcCCC----CCccCCC
Confidence 445555444455678888999998888854221 1110 000000001110000 01355443222 2345789
Q ss_pred ceeeecccccchHHHH--HHHHHHHhh
Q 014020 314 QGFEKMISGMYLGDIV--RRVILRMSE 338 (432)
Q Consensus 314 q~fEKmiSG~YLGEiv--R~iL~~l~~ 338 (432)
..-|-+-||.|.|-+. ..++.++.+
T Consensus 184 ~T~~ai~~G~~~~~~~~i~~~~~~~~~ 210 (258)
T PRK13318 184 NTVEAMQSGIYYGYVGLVEGIVKRIKE 210 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997766432 234444443
No 35
>PRK00047 glpK glycerol kinase; Provisional
Probab=89.58 E-value=0.86 Score=48.81 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=42.4
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeec--CCcc-ccccChhHHHHHHHHHHHHHHHhhC
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--IPPE-LMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~--Ip~~-~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
-+|+||+|+|+.|++++...++ ++...+.+|+ .|.. ....+.+++++-+.+++.+.+++.+
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 69 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAG 69 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999976443 3333333443 2321 2244688999999999999987654
No 36
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=89.45 E-value=1.2 Score=48.36 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=44.4
Q ss_pred EEEEeeCCceeEEEEEE-EcCCcceeeeecceeec-------CC-------ccccccChhHHHHHHHHHHHHHHHhhC
Q 014020 99 YYALDLGGTNFRVLRVQ-LGGQRSSILSSDVERQP-------IP-------PELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~-L~g~~~~~~~~~~~~~~-------Ip-------~~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
+|+||+|.|+.|++++. ..|+ ++...+++|+ .| +.....+.+++++-+.+++++.+++.+
T Consensus 3 ~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred EEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999999998 6553 3333333454 23 345566789999999999999987753
No 37
>PRK15027 xylulokinase; Provisional
Probab=89.16 E-value=1.2 Score=47.57 Aligned_cols=59 Identities=20% Similarity=0.454 Sum_probs=43.8
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecC--C-ccccccChhHHHHHHHHHHHHHHHhh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--P-PELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
||+||+|.|+.|++++...| +++...+.++++ | +.....+.+++++-+.+++++.+++.
T Consensus 2 ~lgID~GTts~Ka~l~d~~G---~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~ 63 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQG---EVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH 63 (484)
T ss_pred EEEEEecccceEEEEEcCCC---CEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999997543 345444445543 2 23445678899999999999998764
No 38
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=88.65 E-value=1.1 Score=47.38 Aligned_cols=59 Identities=22% Similarity=0.445 Sum_probs=41.9
Q ss_pred EEEeeCCceeEEEEEEEcCCcceeeeecceeecC---CccccccChhHHHHHHHHHHHHHHHhhC
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI---PPELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I---p~~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
|+||+|.|+.|++++.+.++ ++...+.+++. ++.....+.+++++-+++++.+++++.+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~ 62 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQAS 62 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999987553 34333333332 1222345688899999999999998765
No 39
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=88.05 E-value=1.3 Score=47.77 Aligned_cols=61 Identities=20% Similarity=0.428 Sum_probs=44.8
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCC---ccccccChhHHHHHHHHHHHHHHHhh
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIP---PELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip---~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
-||+||+|.|+.|+.++..++ ..++......+... +.....+.++++..+.++|.+.+++.
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999998864 23444433333332 12345678999999999999999875
No 40
>PRK10331 L-fuculokinase; Provisional
Probab=88.02 E-value=1.6 Score=46.37 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=42.1
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeec--C--C-ccccccChhHHHHHHHHHHHHHHHhh
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--I--P-PELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~--I--p-~~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
-+|+||+|.|+.|++++..+|+ ++...+.+++ + | +.....+.+++++-+.+++.+.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 4789999999999999986553 3333333333 1 1 12335578889999999999998753
No 41
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=87.65 E-value=1.7 Score=46.74 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=43.1
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecC--C-ccccccChhHHHHHHHHHHHHHHHhhC
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--P-PELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I--p-~~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
-+|+||+|.|+.|++++..+|+ ++...+.++++ | +.....+.+++++-+.+++.+.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 3789999999999999976442 33433334432 2 223355788999999999999987653
No 42
>PLN02295 glycerol kinase
Probab=86.59 E-value=2.2 Score=45.91 Aligned_cols=60 Identities=15% Similarity=0.214 Sum_probs=43.3
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeec--CCc-cccccChhHHHHHHHHHHHHHHHhhC
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP--IPP-ELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~--Ip~-~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
+|+||+|.|+.|++++..+|+ ++...+.+++ .|+ .....+.+++++-+.+++.+.+++..
T Consensus 2 vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~ 64 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAA 64 (512)
T ss_pred EEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999976443 3333333343 232 23456789999999999999988754
No 43
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=85.37 E-value=2.4 Score=45.07 Aligned_cols=58 Identities=24% Similarity=0.348 Sum_probs=41.3
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeec----CC-ccccccChhHHHHHHHHHHHHHHHh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQP----IP-PELMTGTSEDLFDFIASALQQFVEK 159 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~----Ip-~~~~~g~~~~LFd~IA~~i~~fl~~ 159 (432)
+|+||+|.|+.|++++...|+ ++.+.+.+++ .| +.....+.+++++-+.+++++.+.+
T Consensus 3 ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred EEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 689999999999999986442 3433333333 12 2234557889999999999999864
No 44
>PRK04123 ribulokinase; Provisional
Probab=82.55 E-value=4 Score=44.25 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=41.4
Q ss_pred cEEEEeeCCceeEEEEEEE-cCCcceeeeecceeecC--------Cc-cccccChhHHHHHHHHHHHHHHHhhC
Q 014020 98 IYYALDLGGTNFRVLRVQL-GGQRSSILSSDVERQPI--------PP-ELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L-~g~~~~~~~~~~~~~~I--------p~-~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
.+|+||+|.|+.|++++.. +|+ ++...+..|+. |+ .....+.+++++-+.+++.+.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 4889999999999999985 553 33333333431 21 12344577889999999999887543
No 45
>PRK13321 pantothenate kinase; Reviewed
Probab=79.54 E-value=3.5 Score=40.49 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.9
Q ss_pred EEEEeeCCceeEEEEEE
Q 014020 99 YYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~ 115 (432)
+|+||+|||++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 68999999999999996
No 46
>PRK13410 molecular chaperone DnaK; Provisional
Probab=77.35 E-value=8.1 Score=43.42 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=17.1
Q ss_pred ccEEEEeeCCceeEEEEEE
Q 014020 97 GIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~ 115 (432)
|..++||||.||-.|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVME 20 (668)
T ss_pred CcEEEEEeCCCcEEEEEEE
Confidence 4689999999999999986
No 47
>CHL00094 dnaK heat shock protein 70
Probab=75.62 E-value=9.2 Score=42.43 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=16.3
Q ss_pred cEEEEeeCCceeEEEEEE
Q 014020 98 IYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~ 115 (432)
.+++||||.||-.|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVME 20 (621)
T ss_pred ceEEEEeCcccEEEEEEE
Confidence 579999999999999885
No 48
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=75.42 E-value=25 Score=35.46 Aligned_cols=101 Identities=17% Similarity=0.321 Sum_probs=58.9
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCcccc-ccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccce
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELM-TGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELGF 176 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LGf 176 (432)
.+++||+|.+++|++.++-.+++.++.. ....++|+... .|.-.+ .+-+++.|.+.+++.+.. . --.
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~--~~~~~~p~~~i~~g~i~d-~~~~~~~l~~~~~~~~~~-------~--k~v 71 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEH--YAVEPLPAGIFTEGHIVE-YQAVAEALKELLSELGIN-------T--KKA 71 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEE--EEEEECCCCcccCCCccC-HHHHHHHHHHHHHHcCCC-------c--ceE
Confidence 5899999999999988876444333333 33467776543 332111 245677777777665421 1 124
Q ss_pred eeeeeeeeccCCceEEEeeccceecCC-CCCCcHHHHHHHHHHH
Q 014020 177 TFSFPVKQTSVSSGILIKWTKGFAIES-MVGQEVTESLQRALDK 219 (432)
Q Consensus 177 TFSFP~~qt~i~~g~Li~wtKgF~~~~-~~G~dv~~lL~~al~r 219 (432)
.+++|-.+.- +|-+.++. +-.+++.+.+.-..++
T Consensus 72 ~~alp~~~~~---------~r~~~~p~~i~~~el~~~i~~e~~~ 106 (348)
T TIGR01175 72 ATAVPGSAVI---------TKVIPVPAGLDERELEFAVYIEASH 106 (348)
T ss_pred EEEecCCeeE---------EEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6677765521 12355565 5567777777644443
No 49
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=75.30 E-value=4.4 Score=42.85 Aligned_cols=59 Identities=15% Similarity=0.056 Sum_probs=38.1
Q ss_pred EEEeeCCceeEEEEEEEcCCcceee-eecceeecC--Ccc-ccccChhHHHHHHHHHHHHHHH
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSIL-SSDVERQPI--PPE-LMTGTSEDLFDFIASALQQFVE 158 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~-~~~~~~~~I--p~~-~~~g~~~~LFd~IA~~i~~fl~ 158 (432)
||||+|.|+.|++++...+.+.++. ....+.++. |.+ ....+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 6899999999999999865423333 222222221 111 1233567899999999998865
No 50
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=75.04 E-value=51 Score=33.81 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=33.6
Q ss_pred EEEEeeCCceeEEEEEEEcCCc-ceeeeecceeecCCc-cccccChhHHHHHHHHHHHHHHHh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQR-SSILSSDVERQPIPP-ELMTGTSEDLFDFIASALQQFVEK 159 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~-~~~~~~~~~~~~Ip~-~~~~g~~~~LFd~IA~~i~~fl~~ 159 (432)
+++||+|-+++|+...+..+++ ..+.... ..|. .+.+|.-.+ .+-+++.|.+.+++
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~----~~~~~gi~~G~I~d-~~~~~~~i~~al~~ 59 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLEDGELNIIGVG----THPSRGIKKGVIND-IEAAVGSIQRAIEA 59 (371)
T ss_pred EEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEc-HHHHHHHHHHHHHH
Confidence 6899999999999999885543 3333221 2332 344554333 34456666666654
No 51
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=72.37 E-value=36 Score=33.61 Aligned_cols=115 Identities=16% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCc
Q 014020 91 PTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIR 170 (432)
Q Consensus 91 PtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~ 170 (432)
|.-+..+.+++||+|-|++|+...+..+. ....- ....+.++.|.-.+ ++-....|..+++.-.... +.
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~~---~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~----g~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAGA---LEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKL----GR 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEEE---eccccccCCCEEee-HHHHHHHHHHHHHHHHHHh----CC
Confidence 44456778999999999999888755332 11111 11222334443222 5556666777766321100 01
Q ss_pred ccccceeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCCceEEEEEechHHhhhcc
Q 014020 171 RRELGFTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLDMRVAALVNDTVGTLALG 240 (432)
Q Consensus 171 ~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~v~v~aivNDTVgTLla~ 240 (432)
..+--.+ +.|..++.. + ...+.+++++.|++ +..++++..|...+.
T Consensus 87 ~i~~v~~-~vp~~~~~~--------------------~-~~~~~~~~~~aGl~--~~~ii~e~~A~a~~~ 132 (267)
T PRK15080 87 ELTHAAT-AIPPGTSEG--------------------D-PRAIINVVESAGLE--VTHVLDEPTAAAAVL 132 (267)
T ss_pred CcCeEEE-EeCCCCCch--------------------h-HHHHHHHHHHcCCc--eEEEechHHHHHHHh
Confidence 1111122 566554311 1 12355777877765 557789998877653
No 52
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=70.26 E-value=15 Score=41.28 Aligned_cols=19 Identities=37% Similarity=0.403 Sum_probs=16.8
Q ss_pred ccEEEEeeCCceeEEEEEE
Q 014020 97 GIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~ 115 (432)
|..++||||.||-.|+.++
T Consensus 41 ~~viGIDlGTt~s~va~~~ 59 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIME 59 (663)
T ss_pred CcEEEEEECcccEEEEEEe
Confidence 4589999999999999875
No 53
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=68.04 E-value=13 Score=41.21 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.1
Q ss_pred cccEEEEeeCCceeEEEEEE
Q 014020 96 KGIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~ 115 (432)
....++||||.||-.|+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~ 37 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVR 37 (616)
T ss_pred CCeEEEEEeccccEEEEEEE
Confidence 33689999999999999884
No 54
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=67.30 E-value=13 Score=41.29 Aligned_cols=18 Identities=33% Similarity=0.349 Sum_probs=16.4
Q ss_pred cEEEEeeCCceeEEEEEE
Q 014020 98 IYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~ 115 (432)
..++||||.||..|+.++
T Consensus 3 ~viGIDlGTt~s~va~~~ 20 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVME 20 (627)
T ss_pred cEEEEEeCcccEEEEEEE
Confidence 579999999999999886
No 55
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=66.44 E-value=16 Score=41.05 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=23.1
Q ss_pred CcceeecccccCCCCCccccEEEEeeCCceeEEEEEE
Q 014020 79 KLKMLLTFVDNLPTGSEKGIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 79 ~l~MlPTyv~~lPtG~E~G~fLAlDlGGTNlRv~~V~ 115 (432)
+...+-+|+.. .-.+.+++||||.||-.|+.++
T Consensus 13 ~~~~~~~~~~~----~~~~~viGIDLGTTnS~vA~~~ 45 (657)
T PTZ00186 13 SAARLARHESQ----KVQGDVIGVDLGTTYSCVATMD 45 (657)
T ss_pred hcccccccccC----cccceEEEEEeCcCeEEEEEEe
Confidence 34455555532 2235799999999999999874
No 56
>PLN03184 chloroplast Hsp70; Provisional
Probab=63.30 E-value=25 Score=39.51 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=16.3
Q ss_pred cEEEEeeCCceeEEEEEE
Q 014020 98 IYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~ 115 (432)
..++||||.||-.|+.++
T Consensus 40 ~viGIDlGTt~s~va~~~ 57 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAME 57 (673)
T ss_pred CEEEEEeCcCcEEEEEEE
Confidence 479999999999999885
No 57
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=61.81 E-value=60 Score=35.60 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=61.4
Q ss_pred cccEEEEeeCCceeEEEEEEEcCCcceeeeeccee--ecCC-ccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCccc
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVER--QPIP-PELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRR 172 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~--~~Ip-~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l 172 (432)
...+++||.|-|.-|.++.+-..++ ......++ ..-| +.....+.++++.-+.+||+.-.++-... ..-
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e--~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE--LLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc--cceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------ccc
Confidence 4578999999999999999742211 11111111 1122 23456678999999999999988765432 123
Q ss_pred ccceeeeeeeeeccCCceEEEeeccceecCC
Q 014020 173 ELGFTFSFPVKQTSVSSGILIKWTKGFAIES 203 (432)
Q Consensus 173 ~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~ 203 (432)
..|.|=|==+.| ....+-|.|+..-+.
T Consensus 77 ~~~~~~igv~~q----r~~~v~w~~~tg~p~ 103 (516)
T KOG2517|consen 77 VVGATCIGVVNQ----REGSVLWNKRTGEPL 103 (516)
T ss_pred ccccEEEEEEec----CCceEEeecCCCCcc
Confidence 344555555566 557788888776665
No 58
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=61.31 E-value=24 Score=39.56 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=24.1
Q ss_pred ccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccc
Q 014020 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPEL 137 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~ 137 (432)
+..++||||.||-.|+.++= +...++.....+..+|.-+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~--g~~~ii~n~~g~r~tPS~V 42 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKN--ENVEIIANDQGNRTTPSYV 42 (653)
T ss_pred ccEEEEEeCcccEEEEEEeC--CceEEEECCCCCccCCcEE
Confidence 35899999999999998753 2233333222234555543
No 59
>PLN02669 xylulokinase
Probab=54.48 E-value=34 Score=37.53 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=37.9
Q ss_pred cCCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecC--Cccc----cccChh----------HHHHHHHHH
Q 014020 89 NLPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPI--PPEL----MTGTSE----------DLFDFIASA 152 (432)
Q Consensus 89 ~lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~I--p~~~----~~g~~~----------~LFd~IA~~ 152 (432)
++|.+. -||+||+|.|++|++++..+++ ++...+..|++ |+.- ...+.+ .+++-+...
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 466544 5999999999999999975443 33333333331 2111 111222 455778888
Q ss_pred HHHHH
Q 014020 153 LQQFV 157 (432)
Q Consensus 153 i~~fl 157 (432)
+.+.+
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 88865
No 60
>PRK13324 pantothenate kinase; Reviewed
Probab=53.17 E-value=77 Score=31.49 Aligned_cols=46 Identities=20% Similarity=0.349 Sum_probs=28.6
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHH
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASA 152 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~ 152 (432)
.|++|.|=||.+.++.+ ++ +... .++++..-...+.++++-++...
T Consensus 2 iL~iDiGNT~ik~gl~~--~~--~~~~----~~r~~t~~~~~t~de~~~~l~~~ 47 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD--GD--RIVS----QIRYATSSVDSTSDQMGVFLRQA 47 (258)
T ss_pred EEEEEeCCCceEEEEEE--CC--EEEE----EEEEecCccccchHHHHHHHHHH
Confidence 58999999999999986 22 2222 25565422334556666555543
No 61
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=52.52 E-value=27 Score=38.40 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.4
Q ss_pred EEEEeeCCceeEEEEEE
Q 014020 99 YYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~ 115 (432)
.++||||.||..|+.++
T Consensus 2 viGIDlGtt~s~va~~~ 18 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVME 18 (595)
T ss_pred EEEEEeCcccEEEEEEE
Confidence 58999999999999885
No 62
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=52.49 E-value=55 Score=36.00 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred cEEEEeeCCceeEEEEEEEc-CCcceeeeecce---eecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccc
Q 014020 98 IYYALDLGGTNFRVLRVQLG-GQRSSILSSDVE---RQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRE 173 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~-g~~~~~~~~~~~---~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~ 173 (432)
-+++||+|--.-|++++... |. ......+ .+.++......+.++...-++..|.+.+++.+.+ ..--
T Consensus 4 ~~iGvDvGTgSaRA~v~D~~~G~---~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~------~~~V 74 (544)
T COG1069 4 YVIGVDVGTGSARAGVFDCQTGT---LLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVD------PADV 74 (544)
T ss_pred EEEEEeecCCceeEEEEEcCCCc---chhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCC------hhHe
Confidence 47899999999999999885 43 2222222 2345555556789999999999999999987753 2345
Q ss_pred cceeeeeeeeeccCCc-eEEEeeccceec
Q 014020 174 LGFTFSFPVKQTSVSS-GILIKWTKGFAI 201 (432)
Q Consensus 174 LGfTFSFP~~qt~i~~-g~Li~wtKgF~~ 201 (432)
.|+.|++-|.-.-+++ |.-+.....|..
T Consensus 75 ~gIGvDaTcSlvv~d~~g~pl~v~~~~~~ 103 (544)
T COG1069 75 VGIGVDATCSLVVIDRDGNPLAVLPEFPN 103 (544)
T ss_pred eEEEEcceeeeEEECCCCCeeccCCCCCC
Confidence 6777777666544443 355555555544
No 63
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=52.10 E-value=51 Score=35.81 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=70.4
Q ss_pred ccEEEEeeCCceeEEEEEEEcCCcceeeeecc-eeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccc
Q 014020 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDV-ERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELG 175 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~-~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 175 (432)
.-.+|||-|-|+-|..+..=+++-..+.+.+. +.||-|. .+..+..+++.-...++.+-+.+.+.. ..+.--+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~G-WVEhDp~eIw~~~~~~l~~a~~~~~i~----~~~iaaIG 79 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPG-WVEHDPLEIWASVRSVLKEALAKAGIK----PGEIAAIG 79 (499)
T ss_pred cEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCC-ccccCHHHHHHHHHHHHHHHHHHcCCC----ccceEEEE
Confidence 45789999999999988854433211111111 2345444 456788999999999999998877542 34566788
Q ss_pred eeeeeeeeeccCCceEEEeecc--ceec------CCCCCCcHHHHHHHH
Q 014020 176 FTFSFPVKQTSVSSGILIKWTK--GFAI------ESMVGQEVTESLQRA 216 (432)
Q Consensus 176 fTFSFP~~qt~i~~g~Li~wtK--gF~~------~~~~G~dv~~lL~~a 216 (432)
+| +| +.+.+-|.| |=-+ .+--+.++++.|++.
T Consensus 80 IT-----NQ----RETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L~~~ 119 (499)
T COG0554 80 IT-----NQ----RETTVVWDKETGKPIYNAIVWQDRRTADICEELKAD 119 (499)
T ss_pred ee-----cc----ceeEEEEeCCCCCCcccceeeeccchHHHHHHHHhc
Confidence 87 56 889999999 4222 233556677766554
No 64
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=51.97 E-value=1.1e+02 Score=30.01 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=27.7
Q ss_pred EEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHH
Q 014020 100 YALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIAS 151 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~ 151 (432)
|++|.|=||+++++.+ ++ ++.. .|++|-+.. .+.+++..++..
T Consensus 2 L~iDiGNT~i~~g~~~--~~--~~~~----~~r~~t~~~-~t~de~~~~l~~ 44 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS--GN--KVYQ----FWRLATNLM-KTYDEHSEFLKE 44 (243)
T ss_pred EEEEECCCcEEEEEEE--CC--EEEE----EEEecCCCc-cChHHHHHHHHH
Confidence 7999999999999885 22 2332 356665444 356666655543
No 65
>PRK13411 molecular chaperone DnaK; Provisional
Probab=51.46 E-value=40 Score=37.78 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=16.7
Q ss_pred ccEEEEeeCCceeEEEEEE
Q 014020 97 GIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~ 115 (432)
+..++||||.||-.|+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~ 20 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLE 20 (653)
T ss_pred CcEEEEEeCcccEEEEEEE
Confidence 3579999999999999875
No 66
>PRK03657 hypothetical protein; Validated
Probab=51.05 E-value=56 Score=30.58 Aligned_cols=67 Identities=19% Similarity=0.443 Sum_probs=46.0
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Cccc-cEEEEeeCCceeEEEEEEEcC
Q 014020 50 CETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDLGGTNFRVLRVQLGG 118 (432)
Q Consensus 50 f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG----~E~G-~fLAlDlGGTNlRv~~V~L~g 118 (432)
+.++.+.|++ ++..-..+|-+|.....++++..--|-+.. |+| ++.| .|+++...+. ...-..++.|
T Consensus 71 LgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 71 LSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred cCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 4577777777 788888888888866556778887887764 765 3556 5889987654 4444444444
No 67
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.75 E-value=1.6e+02 Score=30.78 Aligned_cols=128 Identities=21% Similarity=0.319 Sum_probs=81.3
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCC-----CCC----
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSE-----PPP---- 168 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~-----~~~---- 168 (432)
.-+.||+|-+..+++-.+-.|+..+. ++...-++|+..+....-.=.+-+++.|+..+.+++.... .+.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kL--e~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKL--EKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceee--eeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 46899999999998766633433332 3444578999887554333367788888888888764421 000
Q ss_pred ----------C-c------ccccceeeeeeeeeccCCceEEEeeccceecCC----CCCCcHHHHHHHHHHHcCCCceEE
Q 014020 169 ----------I-R------RRELGFTFSFPVKQTSVSSGILIKWTKGFAIES----MVGQEVTESLQRALDKRGLDMRVA 227 (432)
Q Consensus 169 ----------~-~------~l~LGfTFSFP~~qt~i~~g~Li~wtKgF~~~~----~~G~dv~~lL~~al~r~~l~v~v~ 227 (432)
+ + ....+.-++||++.-++|=-+|-...-+=.--. +--+++++...+|++..|+...|.
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vl 168 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVL 168 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEE
Confidence 0 0 125577889999998876544433222200000 134899999999999999866554
No 68
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=43.53 E-value=61 Score=35.91 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=14.7
Q ss_pred EEEeeCCceeEEEEEE
Q 014020 100 YALDLGGTNFRVLRVQ 115 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~ 115 (432)
++||||.||-.|+.++
T Consensus 2 iGIDlGTtns~va~~~ 17 (599)
T TIGR01991 2 VGIDLGTTNSLVASVR 17 (599)
T ss_pred EEEEEccccEEEEEEE
Confidence 7899999999999885
No 69
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=41.02 E-value=54 Score=31.79 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.1
Q ss_pred ceeeecccccchHHHHHHHHHHHhhc
Q 014020 314 QGFEKMISGMYLGDIVRRVILRMSEE 339 (432)
Q Consensus 314 q~fEKmiSG~YLGEivR~iL~~l~~~ 339 (432)
+.++.+-.|....+++|-++..++..
T Consensus 168 ~vi~~l~~g~~~~di~~~~~~~va~~ 193 (248)
T TIGR00241 168 ELISLLAAGVKKEDILAGVYESIAER 193 (248)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 44566667888888888888777754
No 70
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=37.17 E-value=1.4e+02 Score=30.13 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=90.0
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccc-ccee
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRE-LGFT 177 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~-LGfT 177 (432)
-+|+|.|||=-+|..-.... ....+.+-+ +.+-++..+|++.-|.+..+.-....+ -.. =|=.
T Consensus 20 ~vaiDiGGtLaKvv~sp~~s--------nrl~F~t~e---T~kId~~ve~l~~li~~h~k~C~~~~~-----liatGGga 83 (342)
T COG5146 20 KVAIDIGGTLAKVVQSPSQS--------NRLTFKTEE---TKKIDQVVEWLNNLIQQHEKLCLTKIT-----LIATGGGA 83 (342)
T ss_pred EEEEecCceeeeeeeCcccc--------cceeeehHh---hhhHHHHHHHHHHHHHHHHhhhhheee-----EEecCCcc
Confidence 58999999988876511100 111222222 224577888888766654332110000 000 0111
Q ss_pred eeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHH--cCCCceEEEEEechHHh----hhcccccCCcceEEE
Q 014020 178 FSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDK--RGLDMRVAALVNDTVGT----LALGHYHDEDTVAAV 251 (432)
Q Consensus 178 FSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r--~~l~v~v~aivNDTVgT----Lla~ay~~~~~~iGl 251 (432)
|-| --++.|.|+++ +...+-.+.|...|.= ..+|-+ +-+.||..+- +....+.+-..++=+
T Consensus 84 ~kf-----------yd~m~~~~~ik-v~r~~eme~li~gl~~fv~~IP~e-vFv~~d~~~e~~~~~~~~~~h~lypyilv 150 (342)
T COG5146 84 YKF-----------YDRMSKQLDIK-VIRENEMEILINGLNYFVINIPAE-VFVEFDAASEGLGILLKEQGHDLYPYILV 150 (342)
T ss_pred hhh-----------HHHHhhhccce-eeecchHHHHHhcccceeeeccHH-HeeeeccccchhhhhhhhccccccceeeE
Confidence 111 22455666665 5555555555443332 123333 4456776543 345555555678888
Q ss_pred EeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCcCCCCCCCCcchhhhhc
Q 014020 252 IIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNFWSSHLPRTSYDIDLDA 306 (432)
Q Consensus 252 IlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~fg~~~lp~T~~D~~lD~ 306 (432)
=+|+|+-.-|+...++.....+.. ..+. |=||... ---+.|.||..+|.
T Consensus 151 NiGsGvSilkvtgpsqf~RvGGss-lGGG----tlwGLls-Llt~a~~ydqmld~ 199 (342)
T COG5146 151 NIGSGVSILKVTGPSQFERVGGSS-LGGG----TLWGLLS-LLTQATDYDQMLDM 199 (342)
T ss_pred eccCCeEEEEecCcchhccccccc-cCcc----hHHHHHH-HHcccccHHHHHHH
Confidence 899999888876555544444321 1122 3477551 11368999999984
No 71
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=34.92 E-value=24 Score=34.52 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.4
Q ss_pred HHhhhcccccCCcceEEE--------Eeecccce
Q 014020 234 VGTLALGHYHDEDTVAAV--------IIGTGTNA 259 (432)
Q Consensus 234 VgTLla~ay~~~~~~iGl--------IlGTGtNa 259 (432)
+|.|.|-+-.||++.||. |+|||-|+
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNg 106 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNG 106 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcCCCEEEEeccCC
Confidence 889999999999999994 55555554
No 72
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=34.16 E-value=91 Score=25.77 Aligned_cols=35 Identities=6% Similarity=0.214 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 41 GVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 41 ~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
++++.+.+...++..+...+.+.|.+.|.+.|..+
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 56667777778999999999999999999999864
No 73
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=33.97 E-value=89 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 40 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
.++++.+.+...++..+...+.+.|.++|.+.|..+
T Consensus 6 ~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 6 ADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 467778888888999999999999999999999864
No 74
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=33.83 E-value=2.1e+02 Score=31.82 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred ccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCcccc-ccChhHHHHHHHHHHHHHHHhhCCCCCCCCCcccccc
Q 014020 97 GIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELM-TGTSEDLFDFIASALQQFVEKEGNGSEPPPIRRRELG 175 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~~~l~LG 175 (432)
..+++||||-||-=|+.++-++ ...++.-......+|.-+. ...++.++.+-|..- ......... ...+..+|
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~-~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q--~~~~p~~t~---~~~kr~~G 78 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGG-LPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQ--AVDNPENTI---FSIKRKIG 78 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCC-CceEecCCCCCcccceEEEECCCCCEEecHHHHHH--hhhCCcceE---EEEehhcC
Q ss_pred eeeeeeeeeccCCceEEEeeccceecCCCCCCcHHHHHHH------------------------------HHHHcCCCce
Q 014020 176 FTFSFPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQR------------------------------ALDKRGLDMR 225 (432)
Q Consensus 176 fTFSFP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~------------------------------al~r~~l~v~ 225 (432)
.. ...........+|-|...++...-+..+.++ |....|+++-
T Consensus 79 ~~-------~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~iaGl~vl 151 (579)
T COG0443 79 RG-------SNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVL 151 (579)
T ss_pred CC-------CCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHHcCCCeE
Q ss_pred EEEEEechHHhhhcccccCCcceEEEEeecccceeeEcccCCcccccCCCCCCCcEEEEcccCCc------CCCCCCCCc
Q 014020 226 VAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGGMVVNMEWGNF------WSSHLPRTS 299 (432)
Q Consensus 226 v~aivNDTVgTLla~ay~~~~~~iGlIlGTGtNacY~E~~~~I~k~~~~~~~~~~miINtEwG~f------g~~~lp~T~ 299 (432)
.++|+.+|..++-.........=+|+-=|.=.-.+- +|..++|.| |+++|--..
T Consensus 152 --rlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvS------------------ll~~~~g~~ev~at~gd~~LGGdd 211 (579)
T COG0443 152 --RLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVS------------------LLEIGDGVFEVLATGGDNHLGGDD 211 (579)
T ss_pred --EEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEE------------------EEEEcCCEEEEeecCCCcccCchh
Q ss_pred chhhh
Q 014020 300 YDIDL 304 (432)
Q Consensus 300 ~D~~l 304 (432)
||..+
T Consensus 212 fD~~l 216 (579)
T COG0443 212 FDNAL 216 (579)
T ss_pred HHHHH
No 75
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=33.80 E-value=91 Score=25.90 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 40 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
.++++.+.+...+|..+...+.+.|.++|...|..+
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 466777777788999999999999999999999764
No 76
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=33.51 E-value=1.4e+02 Score=33.10 Aligned_cols=150 Identities=14% Similarity=0.117 Sum_probs=0.0
Q ss_pred CCCCCccccEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 014020 90 LPTGSEKGIYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGNGSEPPPI 169 (432)
Q Consensus 90 lPtG~E~G~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~~~~~~~~ 169 (432)
.....+....++||||.||-.|+... ++...++.....+..+|.-+--...+-++..-| .+.++
T Consensus 12 ~~~~~~~~~viGIDlGTT~S~va~~~--~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A-ti~~~------------- 75 (595)
T PRK01433 12 ADFKQERQIAVGIDFGTTNSLIAIAT--NRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK-GLRSI------------- 75 (595)
T ss_pred CCccccCceEEEEEcCcccEEEEEEe--CCeeEEEECCCCCeecCeEEEEcCCCEEECchh-hHHHH-------------
Q ss_pred cccccceeee------------eeeeeccCCceEEEeeccceecCCCCCCcHHHHHHHHHHHcCCC--------------
Q 014020 170 RRRELGFTFS------------FPVKQTSVSSGILIKWTKGFAIESMVGQEVTESLQRALDKRGLD-------------- 223 (432)
Q Consensus 170 ~~l~LGfTFS------------FP~~qt~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~l~-------------- 223 (432)
+..+|-.|+ .+..+..-....+..=++.|...++...=+..+-+.|-...|-+
T Consensus 76 -KrliG~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~ 154 (595)
T PRK01433 76 -KRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFND 154 (595)
T ss_pred -HHHhCCCchhhccchhhHhhhhheeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCH
Q ss_pred --------------ceEEEEEechHHhhhcccccCCcceEEEEeecc
Q 014020 224 --------------MRVAALVNDTVGTLALGHYHDEDTVAAVIIGTG 256 (432)
Q Consensus 224 --------------v~v~aivNDTVgTLla~ay~~~~~~iGlIlGTG 256 (432)
+++..++|+.+|.-++..........-+|+--|
T Consensus 155 ~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlG 201 (595)
T PRK01433 155 AARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLG 201 (595)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECC
No 77
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=32.75 E-value=5.3e+02 Score=26.09 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCceEEEEEechHHhhhcccccCCcceEEEEeecccce
Q 014020 212 SLQRALDKRGLDMRVAALVNDTVGTLALGHYHDEDTVAAVIIGTGTNA 259 (432)
Q Consensus 212 lL~~al~r~~l~v~v~aivNDTVgTLla~ay~~~~~~iGlIlGTGtNa 259 (432)
-+.++++.. .++++.++|+.+|..++.........-++|+--|...
T Consensus 116 ~l~~a~~~a--g~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gt 161 (335)
T PRK13929 116 AISDAVKNC--GAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGT 161 (335)
T ss_pred HHHHHHHHc--CCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCe
Confidence 344566555 4566789999999998764443333445565554333
No 78
>PRK10854 exopolyphosphatase; Provisional
Probab=31.54 E-value=1.9e+02 Score=31.42 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=45.0
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCcccc-ccC-hhHHHHHHHHHHHHHHHh
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELM-TGT-SEDLFDFIASALQQFVEK 159 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~g~-~~~LFd~IA~~i~~fl~~ 159 (432)
.|=+||+|-.++|..+++..++..+++....+...+.+.+. +|. .++=.+-..+++..|...
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 47799999999999999996554455555555667766553 222 357778888889888664
No 79
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.48 E-value=1.2e+02 Score=27.68 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=44.6
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhCC
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEGN 162 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~~ 162 (432)
..+++|=|+..++|++.+.++...++.....++.+++.- +.+++=+|- ..++.|+++++.
T Consensus 3 vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~V 62 (138)
T PF11215_consen 3 VCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYKV 62 (138)
T ss_pred EEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcCC
Confidence 468899999999999998776666777777778887654 455665655 447788887764
No 80
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=31.26 E-value=1.7e+02 Score=29.35 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=41.5
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCcccc-ccC-hhHHHHHHHHHHHHHHHhh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELM-TGT-SEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~g~-~~~LFd~IA~~i~~fl~~~ 160 (432)
|=+||+|-.++|..++++.++...++.......++.+.+- +|. .++=.+-+.+++.+|...-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~ 65 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELL 65 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999986443344444444566766652 222 3456667778888887653
No 81
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=31.17 E-value=1e+02 Score=28.79 Aligned_cols=67 Identities=28% Similarity=0.562 Sum_probs=48.3
Q ss_pred CCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Cccc-cEEEEeeCCceeEEEEEEEcCC
Q 014020 51 ETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 51 ~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG----~E~G-~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
.++.+.|.+ |++.-.+||-.|...+.++++..=-|-+.. |+| ++.| .|+++..|| ..-+..++++++
T Consensus 66 gV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~-~~~~~~~~~~g~ 140 (162)
T COG1546 66 GVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGG-EAITIRVNFGGD 140 (162)
T ss_pred CCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCC-ceEEEEEEcCCC
Confidence 467776654 788888999999877667888888888875 884 3566 488899844 444446666664
No 82
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=30.77 E-value=1.2e+02 Score=24.49 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 40 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
.++++++.+...++..+...+.+.|.++|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 467777877888999999999999999999999863
No 83
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=30.71 E-value=1e+02 Score=24.68 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 40 MGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 40 ~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
.++++.+.+...++..+...+.+.|.++|.+.|..+
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 466777777778999999999999999999999753
No 84
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=30.59 E-value=47 Score=23.49 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=18.3
Q ss_pred CCCCCCceeeecccccchHHHHHHHHHHHh
Q 014020 308 SPNPNDQGFEKMISGMYLGDIVRRVILRMS 337 (432)
Q Consensus 308 S~nPG~q~fEKmiSG~YLGEivR~iL~~l~ 337 (432)
++||.+|+-|-=-+..|+|-++=.++--+.
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vLF 31 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVLF 31 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHHh
Confidence 579999999999999999998877765544
No 85
>PRK13411 molecular chaperone DnaK; Provisional
Probab=30.35 E-value=1.3e+02 Score=33.66 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=21.3
Q ss_pred ccccEEEEeeCCceeEEEEEEEcCC
Q 014020 95 EKGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 95 E~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
..+.++.+|+||.+|-|.++++.++
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeCC
Confidence 3457999999999999999999654
No 86
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=30.22 E-value=87 Score=32.51 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=35.0
Q ss_pred EEEEeeCCceeEEEEEEEcCCcceeeeecceeecCC-ccccccChhHHHHHHH---HHHHHHHHhhC
Q 014020 99 YYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIP-PELMTGTSEDLFDFIA---SALQQFVEKEG 161 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip-~~~~~g~~~~LFd~IA---~~i~~fl~~~~ 161 (432)
.|+|+.|||+.++++++-.+. +.++. ..-+ +++ +..+..-|.++ +.|.+++++++
T Consensus 2 il~in~Gsts~k~alf~~~~~---~~~~~---~~~~~~~~--~~~~~~~~q~~~r~~~i~~~l~~~~ 60 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERP---LFEET---LRHSVEEL--GRFKNVIDQFEFRKQVILQFLEEHG 60 (351)
T ss_pred EEEEecCchhheEEEEeCCCc---eeeee---ecCCHHHh--cccccHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999865332 22221 1112 222 23445667777 88888888764
No 87
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=29.50 E-value=1e+02 Score=32.84 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=16.4
Q ss_pred EEEeeCCceeEEEEEEEcC
Q 014020 100 YALDLGGTNFRVLRVQLGG 118 (432)
Q Consensus 100 LAlDlGGTNlRv~~V~L~g 118 (432)
+|+|+|-|+++..++.|..
T Consensus 4 iAvDiGTTti~~~L~dl~~ 22 (412)
T PF14574_consen 4 IAVDIGTTTIAAYLVDLET 22 (412)
T ss_dssp EEEEE-SSEEEEEEEETTT
T ss_pred EEEEcchhheeeEEEECCC
Confidence 7999999999999999953
No 88
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=28.84 E-value=1.3e+02 Score=22.77 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014020 37 KRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHA 70 (432)
Q Consensus 37 ~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~ 70 (432)
..++++++.+.+.|..+.+++++=+..|..++.+
T Consensus 30 ~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 30 RTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp S-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999998865
No 89
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=28.64 E-value=1.2e+02 Score=33.25 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceeEEEEEEEcCC
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
...++.+|+||.++-|.++++.+.
T Consensus 182 ~~~vlV~D~Gggt~dvsv~~~~~~ 205 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSILEIGDG 205 (595)
T ss_pred CcEEEEEECCCCeEEEEEEEecCC
Confidence 456899999999999999999654
No 90
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=27.34 E-value=99 Score=33.55 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.7
Q ss_pred ccccEEEEeeCCceeEEEEEEEcCC
Q 014020 95 EKGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 95 E~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
..+.++.+|+||+++-+.+++...+
T Consensus 186 ~~~~vlv~D~Gggt~dvs~~~~~~~ 210 (602)
T PF00012_consen 186 KGKTVLVVDFGGGTFDVSVVEFSNG 210 (602)
T ss_dssp SEEEEEEEEEESSEEEEEEEEEETT
T ss_pred cccceeccccccceEeeeehhcccc
Confidence 4568999999999999999999644
No 91
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=26.73 E-value=1.5e+02 Score=24.56 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCC
Q 014020 41 GVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEG 76 (432)
Q Consensus 41 ~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~ 76 (432)
++++.+.+...++..+...+.+.|.+.|.+.|.+++
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~~~ 40 (90)
T PRK10664 5 QLIDKIAAGADISKAAAGRALDAIIASVTESLKEGD 40 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 566677777789999999999999999999998643
No 92
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=26.72 E-value=53 Score=33.48 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=18.6
Q ss_pred cccEEEEeeCCceeEEEEEEEc
Q 014020 96 KGIYYALDLGGTNFRVLRVQLG 117 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~ 117 (432)
...|+++|=|.||||+-+++=+
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~d 25 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGD 25 (306)
T ss_pred CceEEEEecCCccEEEEEEcCC
Confidence 4579999999999999988543
No 93
>PRK13322 pantothenate kinase; Reviewed
Probab=26.58 E-value=2.2e+02 Score=27.93 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=19.0
Q ss_pred eecCCCCCCcHHHHHHHHHHHc-CCCc
Q 014020 199 FAIESMVGQEVTESLQRALDKR-GLDM 224 (432)
Q Consensus 199 F~~~~~~G~dv~~lL~~al~r~-~l~v 224 (432)
.-++.|++..+.+.|++++++. ++++
T Consensus 51 v~vsSV~p~~~~~~l~~~l~~~~~~~~ 77 (246)
T PRK13322 51 CRIVSVLSEEETARLVAILEKRLGIPV 77 (246)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHhCCCe
Confidence 4455678889999999999774 5443
No 94
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=26.40 E-value=74 Score=22.67 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=25.9
Q ss_pred CCCCCCceeeecccccchHHHHHHHHHHHhh
Q 014020 308 SPNPNDQGFEKMISGMYLGDIVRRVILRMSE 338 (432)
Q Consensus 308 S~nPG~q~fEKmiSG~YLGEivR~iL~~l~~ 338 (432)
.+||.+|+-|-=-...|+|-++=.++--+..
T Consensus 4 ~~NpN~q~VELNRTSLy~GlLlifvl~vLFs 34 (39)
T PRK00753 4 NPNPNKQPVELNRTSLYLGLLLVFVLGILFS 34 (39)
T ss_pred CCCCCCCCceechhhHHHHHHHHHHHHHHHH
Confidence 5799999999999999999988777655543
No 95
>PRK03661 hypothetical protein; Validated
Probab=26.01 E-value=1.3e+02 Score=27.89 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=43.3
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Cccc-cEEEEeeCCceeEEEEEEEc
Q 014020 50 CETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDLGGTNFRVLRVQLG 117 (432)
Q Consensus 50 f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG----~E~G-~fLAlDlGGTNlRv~~V~L~ 117 (432)
+.+|.+.|++ ++..-..+|-+|.....++++..--|-+.. |+| +..| .|++|...+....+-...+.
T Consensus 65 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~~~~~~~~~~~~~ 139 (164)
T PRK03661 65 IGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASASGEGITRRECFS 139 (164)
T ss_pred cCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeCCCcEEEEEEecC
Confidence 4577777777 777888888888765555777777777764 654 4567 58888764333333333443
No 96
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=25.84 E-value=1.3e+02 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.373 Sum_probs=37.3
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Cccc-cEEEEee
Q 014020 50 CETTVSRLRQ---VVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTG----SEKG-IYYALDL 104 (432)
Q Consensus 50 f~~~~~~L~~---i~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG----~E~G-~fLAlDl 104 (432)
+.+|.+.|++ ++.....+|-+|..+..++++.---|-+.. |+| ++.| .|+++-.
T Consensus 53 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 53 LGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred hCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 4577777776 788888888888765555777777776654 654 4566 4778765
No 97
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=24.99 E-value=2.1e+02 Score=31.08 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=43.6
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeecceeecCCcccc-ccC-hhHHHHHHHHHHHHHHHh
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELM-TGT-SEDLFDFIASALQQFVEK 159 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~-~g~-~~~LFd~IA~~i~~fl~~ 159 (432)
.|=+||+|-.++|..+++..++..+++....+...+.+.+. +|. .++=.+-..+++..|...
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 46689999999999999985544455554555667765442 332 356778888888888764
No 98
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=24.99 E-value=1.7e+02 Score=23.25 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcC
Q 014020 41 GVLRELEEGCETTVSRLRQVVDAMAVEMHAGLAS 74 (432)
Q Consensus 41 ~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~ 74 (432)
++++.+.+...++..+...+.+.|.++|.+.|..
T Consensus 4 ~l~~~ia~~~~~~~~~v~~vl~~~~~~i~~~L~~ 37 (87)
T cd00591 4 ELIEAIAEKTGLSKKDAEAAVDAFLDVITEALAK 37 (87)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhC
Confidence 5667777777899999999999999999999975
No 99
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=24.93 E-value=2.2e+02 Score=26.13 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=34.8
Q ss_pred EEEEeeCCceeEEEEEEEcCCc-ceeeeecceeecCCc-cccccChhHHHHHHHHHHHHHHHhh
Q 014020 99 YYALDLGGTNFRVLRVQLGGQR-SSILSSDVERQPIPP-ELMTGTSEDLFDFIASALQQFVEKE 160 (432)
Q Consensus 99 fLAlDlGGTNlRv~~V~L~g~~-~~~~~~~~~~~~Ip~-~~~~g~~~~LFd~IA~~i~~fl~~~ 160 (432)
|.+||+|-++++++..+..+++ .++.-.. ..|. .+..|.-.+ .+-++++|.+.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~----~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGVG----EVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEEE----EecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 5799999999999999986443 3333322 1243 355554333 345566666666643
No 100
>CHL00094 dnaK heat shock protein 70
Probab=24.68 E-value=1.5e+02 Score=33.06 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.2
Q ss_pred ccEEEEeeCCceeEEEEEEEcCC
Q 014020 97 GIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
+.++.+|+||.++-|.++++++.
T Consensus 187 ~~vlV~DlGgGT~DvSv~~~~~~ 209 (621)
T CHL00094 187 ETILVFDLGGGTFDVSILEVGDG 209 (621)
T ss_pred CEEEEEEcCCCeEEEEEEEEcCC
Confidence 46899999999999999999653
No 101
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=24.60 E-value=1.6e+02 Score=33.31 Aligned_cols=24 Identities=25% Similarity=0.560 Sum_probs=20.7
Q ss_pred cccEEEEeeCCceeEEEEEEEcCC
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
.+.++.+||||.+|=|.++++.++
T Consensus 211 ~~~vlV~DlGGGT~DvSil~~~~g 234 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVLEIAGG 234 (657)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 347999999999999999999654
No 102
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=24.53 E-value=1.5e+02 Score=30.08 Aligned_cols=59 Identities=17% Similarity=0.379 Sum_probs=34.0
Q ss_pred EEeeCCceeEEEEEEEcCCcceeeeecceeecCCccccccChhHHHHHHHHHHHHHHHhhC
Q 014020 101 ALDLGGTNFRVLRVQLGGQRSSILSSDVERQPIPPELMTGTSEDLFDFIASALQQFVEKEG 161 (432)
Q Consensus 101 AlDlGGTNlRv~~V~L~g~~~~~~~~~~~~~~Ip~~~~~g~~~~LFd~IA~~i~~fl~~~~ 161 (432)
.||+|-.++|+..++-.+++..+. ..-..++|+.........=.+.+++.|.+.+++++
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~--~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~ 59 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLE--AFASIPLPPGAISDGEIVDPEALAEALKELLKENK 59 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEE--EEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT
T ss_pred CeecCCCeEEEEEEEEcCCccEEE--EEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcC
Confidence 589999999998887755443333 33357788776432211123567777777777665
No 103
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=24.53 E-value=1.4e+02 Score=33.13 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred ccEEEEeeCCceeEEEEEEEcCC
Q 014020 97 GIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 97 G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
..++.+|+||.++-|.++++++.
T Consensus 185 ~~vlV~D~GggT~dvsv~~~~~~ 207 (627)
T PRK00290 185 EKILVYDLGGGTFDVSILEIGDG 207 (627)
T ss_pred CEEEEEECCCCeEEEEEEEEeCC
Confidence 56999999999999999999654
No 104
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=24.24 E-value=1.6e+02 Score=33.07 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceeEEEEEEEcCC
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
.+.++.+|+||.+|-|.++++.++
T Consensus 193 ~~~vlv~D~GggT~dvsv~~~~~~ 216 (653)
T PTZ00009 193 EKNVLIFDLGGGTFDVSLLTIEDG 216 (653)
T ss_pred CCEEEEEECCCCeEEEEEEEEeCC
Confidence 456999999999999999999654
No 105
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=24.06 E-value=1.8e+02 Score=23.93 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.3
Q ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 41 GVLRELEEG-CETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 41 ~~l~~~~~~-f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
++++.+.+. ..++..+...+.+.|.++|.+.|..+
T Consensus 5 eli~~ia~~~~~~s~~~~~~vv~~~~~~i~~~L~~g 40 (94)
T PRK00199 5 ELIERLAARNPHLSAKDVENAVKEILEEMSDALARG 40 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 566677654 46899999999999999999999864
No 106
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=23.82 E-value=55 Score=33.66 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=18.0
Q ss_pred cccEEEEeeCCceeEEEEEE
Q 014020 96 KGIYYALDLGGTNFRVLRVQ 115 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~ 115 (432)
.+..+.+|+|||+..|+.|+
T Consensus 127 ~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 127 IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCCEEEEEcCccceeeEEec
Confidence 56799999999999999984
No 107
>PRK13410 molecular chaperone DnaK; Provisional
Probab=22.77 E-value=1.7e+02 Score=32.98 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.8
Q ss_pred cccEEEEeeCCceeEEEEEEEcCC
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
.+.++.+|+||.+|-|.++++.++
T Consensus 186 ~~~vlV~DlGgGT~Dvsv~~~~~g 209 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSLLEVGNG 209 (668)
T ss_pred CCEEEEEECCCCeEEEEEEEEcCC
Confidence 346999999999999999999654
No 108
>CHL00038 psbL photosystem II protein L
Probab=22.64 E-value=90 Score=22.17 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCCCCCceeeecccccchHHHHHHHHHHHhh
Q 014020 308 SPNPNDQGFEKMISGMYLGDIVRRVILRMSE 338 (432)
Q Consensus 308 S~nPG~q~fEKmiSG~YLGEivR~iL~~l~~ 338 (432)
.+||.+|+-|-=-...|+|-++=.++.-+..
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vlfs 33 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVLFS 33 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998777765543
No 109
>PF13941 MutL: MutL protein
Probab=22.63 E-value=94 Score=33.64 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=23.3
Q ss_pred cEEEEeeCCceeEEEEEEEcCCcceeeeec
Q 014020 98 IYYALDLGGTNFRVLRVQLGGQRSSILSSD 127 (432)
Q Consensus 98 ~fLAlDlGGTNlRv~~V~L~g~~~~~~~~~ 127 (432)
.||++|+|.|.-|+.++.+..+..+++-+-
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~a 30 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQA 30 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEEE
Confidence 489999999999999999755555555443
No 110
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=21.70 E-value=1.2e+02 Score=31.75 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCccc
Q 014020 35 KWKRVMGVLRELEEGCETTVSRLRQVVDAMAVEMHAGLASEGGSKLKMLLTFVDNLPTGSEKG 97 (432)
Q Consensus 35 ~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlPTyv~~lPtG~E~G 97 (432)
.++++++++.+.-....++.++-+.+++.|..-=..|..+|+ +..+|-|+..+-.|.-++
T Consensus 7 ~~e~L~~~~~~vl~~~G~~ee~A~~vA~~lv~ad~~G~~SHG---v~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 7 SAEELKALIEEVLRKAGVPEEDARAVADVLVAADLRGVDSHG---VGRLPGYVRRLKAGKINP 66 (349)
T ss_pred cHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHcCCcCC
Confidence 345667777777777789999999999999998888888765 789999999877775444
No 111
>PLN03184 chloroplast Hsp70; Provisional
Probab=21.04 E-value=1.8e+02 Score=32.84 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.6
Q ss_pred cccEEEEeeCCceeEEEEEEEcCC
Q 014020 96 KGIYYALDLGGTNFRVLRVQLGGQ 119 (432)
Q Consensus 96 ~G~fLAlDlGGTNlRv~~V~L~g~ 119 (432)
.+.++.+|+||.+|-|.++++++.
T Consensus 223 ~~~vlV~DlGgGT~DvSi~~~~~~ 246 (673)
T PLN03184 223 NETILVFDLGGGTFDVSVLEVGDG 246 (673)
T ss_pred CCEEEEEECCCCeEEEEEEEecCC
Confidence 346899999999999999999653
No 112
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=21.02 E-value=2.2e+02 Score=23.25 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=29.6
Q ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhcCC
Q 014020 40 MGVLRELEEG-CETTVSRLRQVVDAMAVEMHAGLASE 75 (432)
Q Consensus 40 ~~~l~~~~~~-f~~~~~~L~~i~~~f~~em~~GL~~~ 75 (432)
.++++.+.+. ..+|..+...+.+.|.++|.+.|.++
T Consensus 4 ~eli~~i~~~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (94)
T TIGR00988 4 SELIERIATQQSHLPAKDVEDAVKTMLEHMASALAQG 40 (94)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567777654 35899999999999999999999864
Done!