Query 014021
Match_columns 432
No_of_seqs 222 out of 548
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 01:05:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0251 Clathrin assembly prot 100.0 3.6E-83 7.9E-88 666.7 32.3 398 12-428 1-421 (491)
2 PF07651 ANTH: ANTH domain; I 100.0 6.7E-67 1.5E-71 513.9 22.7 263 33-301 2-279 (280)
3 KOG0980 Actin-binding protein 100.0 9.5E-43 2.1E-47 371.9 18.8 252 33-300 5-275 (980)
4 cd03564 ANTH_AP180_CALM ANTH d 100.0 2.5E-32 5.4E-37 236.9 12.0 117 35-158 1-117 (117)
5 smart00273 ENTH Epsin N-termin 100.0 1.1E-28 2.5E-33 216.7 10.7 125 33-163 1-125 (127)
6 PF01417 ENTH: ENTH domain; I 99.4 3.4E-12 7.3E-17 111.9 10.9 117 32-155 1-119 (125)
7 cd00197 VHS_ENTH_ANTH VHS, ENT 99.2 1.6E-10 3.5E-15 99.6 10.5 111 36-154 2-112 (115)
8 cd03571 ENTH_epsin ENTH domain 99.1 8.8E-10 1.9E-14 96.8 10.4 114 35-155 2-116 (123)
9 KOG2056 Equilibrative nucleosi 98.5 4E-07 8.7E-12 91.8 8.8 117 31-154 18-135 (336)
10 cd03572 ENTH_epsin_related ENT 98.1 2.5E-05 5.5E-10 68.6 9.3 110 38-153 5-115 (122)
11 KOG2057 Predicted equilibrativ 97.1 0.0012 2.7E-08 66.2 7.1 125 31-160 20-152 (499)
12 cd03568 VHS_STAM VHS domain fa 95.6 0.06 1.3E-06 48.7 8.4 76 35-113 1-76 (144)
13 cd03569 VHS_Hrs_Vps27p VHS dom 95.6 0.082 1.8E-06 47.6 9.0 78 33-113 3-80 (142)
14 PF00790 VHS: VHS domain; Int 95.5 0.077 1.7E-06 47.4 8.6 79 32-113 3-81 (140)
15 cd03567 VHS_GGA VHS domain fam 95.4 0.1 2.2E-06 47.0 8.9 76 35-113 2-77 (139)
16 cd03565 VHS_Tom1 VHS domain fa 95.3 0.12 2.5E-06 46.6 9.1 77 35-113 2-78 (141)
17 smart00288 VHS Domain present 95.1 0.13 2.8E-06 45.7 8.4 75 36-113 2-76 (133)
18 cd03561 VHS VHS domain family; 94.8 0.17 3.8E-06 44.7 8.5 75 36-113 2-76 (133)
19 KOG2199 Signal transducing ada 84.2 5 0.00011 42.0 8.6 79 32-113 6-84 (462)
20 KOG0414 Chromosome condensatio 79.4 31 0.00068 40.8 13.5 171 74-275 360-573 (1251)
21 KOG2675 Adenylate cyclase-asso 60.8 79 0.0017 33.8 10.5 33 243-275 101-133 (480)
22 KOG1087 Cytosolic sorting prot 52.1 61 0.0013 35.0 8.3 75 35-112 2-76 (470)
23 PF02042 RWP-RK: RWP-RK domain 43.6 23 0.0005 26.7 2.5 35 233-276 8-42 (52)
24 KOG3520 Predicted guanine nucl 39.3 1.3E+02 0.0028 36.0 8.8 69 208-282 447-529 (1167)
25 KOG1915 Cell cycle control pro 33.7 54 0.0012 35.7 4.3 66 177-271 150-215 (677)
26 PF02184 HAT: HAT (Half-A-TPR) 31.8 36 0.00079 23.1 1.8 26 246-271 3-28 (32)
27 cd06895 PX_PLD The phosphoinos 28.7 1E+02 0.0022 27.7 4.7 22 280-301 90-120 (140)
28 PF08832 SRC-1: Steroid recept 28.0 33 0.0007 28.0 1.2 11 97-107 58-69 (78)
29 KOG1086 Cytosolic sorting prot 25.2 2.4E+02 0.0052 30.4 7.2 82 32-116 6-87 (594)
30 KOG0946 ER-Golgi vesicle-tethe 24.0 9.7E+02 0.021 28.0 12.0 13 189-201 144-156 (970)
31 KOG1597 Transcription initiati 23.0 2.4E+02 0.0051 28.8 6.5 70 217-294 104-183 (308)
No 1
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-83 Score=666.69 Aligned_cols=398 Identities=40% Similarity=0.646 Sum_probs=320.3
Q ss_pred HHHhhhccccchhhhhhcCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHH
Q 014021 12 KALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVA 91 (432)
Q Consensus 12 ka~ga~KD~~siglakv~~~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiVa 91 (432)
+++|++||++|+|+|+|.+.++++++||+|||+|+++|||+|||+.|+.+|+.++ +++++|+++|++||++||||+||
T Consensus 1 ~~~gaiKD~~s~~~a~v~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~--~~i~~~v~aLs~Rl~~TrnW~VA 78 (491)
T KOG0251|consen 1 RAIGAIKDRTSIGKASVASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSP--ASIPSCVHALSERLNKTRNWTVA 78 (491)
T ss_pred CCccccchhhhhHHHHhhhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCc--ccHHHHHHHHHHHhCCCcceeeh
Confidence 4789999999999999998899999999999999999999999999999999885 79999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCcccHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHHHhhhccCccccCCC-
Q 014021 92 LKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIETDRP- 170 (432)
Q Consensus 92 lK~LillHrLLreG~p~f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~~~r~~~~d~~~e~~- 170 (432)
+|+||||||||++|+++|.+++..+ .++|+|++|+|++++.+|||++|||+|++||++|+.||+.+++|++..+.
T Consensus 79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~~~d~~~~~~~ 154 (491)
T KOG0251|consen 79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVLGFDIEKVKRG 154 (491)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHhccccccccCc
Confidence 9999999999999999998877443 47899999999998899999999999999999999999999999885532
Q ss_pred ----CCCCCC-hHHHHhhHHHHHHHHHHHHcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Q 014021 171 ----RTKDLD-TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHD 245 (432)
Q Consensus 171 ----~~r~l~-~e~LL~~l~~LQ~Lld~ll~c~p~~~~~~N~lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~~d 245 (432)
..+++. .+.+|+.+++||.|||++|+|+|.+.+++|++|++||.+||+|||+||++||+||++|||+||+|+++|
T Consensus 155 ~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi~~Llekffem~~~~ 234 (491)
T KOG0251|consen 155 KEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGIINLLEKFFEMSKHD 234 (491)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 456666 788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccCCCCCChhhHHHHHHHHHhCCCCCCCCCcc-ccC--------C
Q 014021 246 ALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKEAPRGSTFRKDQ-TVD--------N 316 (432)
Q Consensus 246 a~~aleiykrf~~Q~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEeylrd~~~~~~~~~~~-~~~--------~ 316 (432)
|+++|+||+||.+|+++|.+||++||++|+.|+++||+|+++|.++|++|||||++.+..+...... ... .
T Consensus 235 a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (491)
T KOG0251|consen 235 AIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAKVSPVSQFSTDFESS 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccccCCccccccchhcc
Confidence 9999999999999999999999999999999999999999999999999999999976332211100 000 0
Q ss_pred CC--CCccchhhcccCCCCCCCCCC----CCCCCCCCCCCCCCC--CCCCCCcCCCCCCCCccchhhhhccchhccccCC
Q 014021 317 KV--DAPKEMMAIEYKKTPEVEEAK----PPSPPPPEPVKVEAP--VVEPPDLLGLDDPLPVASELDEKNALALAIVPVE 388 (432)
Q Consensus 317 ~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~dl~~l~~~~~~~~~~~~~~~lala~~~~~ 388 (432)
++ +.+...+.++ + .+..+.+ +..|.+.++++...+ ...++|++.+.++.+..++.+..|+||||+ ++
T Consensus 315 e~~~~~~~~~e~~~-~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~- 389 (491)
T KOG0251|consen 315 ESSSRLEEPEEQKE-V--IEELQEPLEQEEDQPSPNSENPEANDQAGIATDDLLLQPDNLPMFSASTAPNALALAL-PF- 389 (491)
T ss_pred ccccccccchhhhh-c--cccccccccccccCCCCCCCCccccccccccCcchhhcccCCCccccccCcchhhcCC-CC-
Confidence 11 0000001111 1 1222211 111111111111111 123446666666778899999999999998 32
Q ss_pred CCCCCCCCCCCCCCccceecccCCCCCCchhhhccccCCC
Q 014021 389 QPTSVAPTQGNGTAGWELALVTAPSSNENATAASKLVLIF 428 (432)
Q Consensus 389 ~~~~~~~~~~~~~~~welalv~~~s~~~~~~~~~~l~gg~ 428 (432)
. ....+|||+++|+..++.-...+..++||||
T Consensus 390 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 421 (491)
T KOG0251|consen 390 P--------NHTGSGWGLPAATPDSAAWETATMQALAGGL 421 (491)
T ss_pred C--------CCCCCccccccCCcchhhhhhcccccccccc
Confidence 1 3345677777777554433211112799998
No 2
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats [, ].; GO: 0005543 phospholipid binding; PDB: 1HX8_A 3ZYM_A 1HFA_A 1HG2_A 3ZYL_B 3ZYK_A 1HG5_A 1HF8_A.
Probab=100.00 E-value=6.7e-67 Score=513.91 Aligned_cols=263 Identities=45% Similarity=0.795 Sum_probs=215.7
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
+++++||+|||+|+++|||+||||.||.+|++ + .++++++|+|++|+++++||+|+||+||++|||||+|||.|.++
T Consensus 2 ~~l~~av~KAT~~~~~ppk~Khv~~il~~t~~-~--~~~~~~~~~l~~Rl~~~~~w~V~~K~Lil~H~llr~G~~~~~~~ 78 (280)
T PF07651_consen 2 SDLEKAVIKATSHDEAPPKEKHVREILSATSS-P--ESVAFLFWALSRRLPLTRNWIVALKALILLHRLLRDGHPSFLQE 78 (280)
T ss_dssp -HHHHHHHHHT-SSS---HHHHHHHHHHHCST-T--S-HHHHHHHHHHHCTSS-SHHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcC-C--ccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 58999999999999999999999999999998 3 67899999999999999999999999999999999999999988
Q ss_pred HHHHhhcCCCccccccccC--CCCCCCCchhHhHHHHHHHHHHHHHHhhhccCc---cccCCC---------CC-CCCCh
Q 014021 113 VINYGRSRSHMLNMAHFKD--DSSPNAWDYSAWVRSYALFLEERLECFRVLKYD---IETDRP---------RT-KDLDT 177 (432)
Q Consensus 113 l~~~~~~r~~il~Ls~f~D--~s~~~~~d~s~fVR~Ya~YL~eRl~~~r~~~~d---~~~e~~---------~~-r~l~~ 177 (432)
+..+ +.++++++++++ ++++.+|+|+.|||+|++||++|+.||+.++.+ ++.+.. .. ..+++
T Consensus 79 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ir~Y~~yL~~rl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (280)
T PF07651_consen 79 LLRY---NRRLFDLSNIWDFDDSSSKSWDYSAFIRAYAKYLDERLSFHRKLKIDPGNLEREEEGSLVSRDDPNSRKSLDI 155 (280)
T ss_dssp HHHT---T-----TT---T---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCCS--S-----TTSHCC-C--H
T ss_pred HHHc---ccchhhhccccccccCCccccchhHHHHHHHHHHHHHHHHHHHccccccccccccccccccccCccccccccH
Confidence 8666 345667776666 677789999999999999999999999999887 543321 22 37778
Q ss_pred HHHHhhHHHHHHHHHHHHcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 014021 178 AELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAG 257 (432)
Q Consensus 178 e~LL~~l~~LQ~Lld~ll~c~p~~~~~~N~lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~~da~~aleiykrf~ 257 (432)
+++|++++.||++|+++++|+|.+.+++|+|+++||++||+||++||+.+|+||++|+++||+|++.||.+++++|+||.
T Consensus 156 ~~lL~~l~~lq~ll~~ll~~~~~~~~~~n~~~~~a~~lli~Ds~~lY~~i~~~i~~Ll~~~~~m~~~~a~~~~~i~~rf~ 235 (280)
T PF07651_consen 156 DDLLDQLPKLQRLLDRLLDCRPRGAALNNQCVQAAFRLLIKDSFQLYKFINEGIINLLERFFEMSKPDAEKLLGIYKRFA 235 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---GGG--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCccccCCCCCChhhHHHHHHHHHh
Q 014021 258 QQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (432)
Q Consensus 258 ~Q~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEeylrd 301 (432)
+|+++|.+||++|++++++++++||+|+++|++|+.+||||++|
T Consensus 236 ~q~~~L~~Fy~~c~~~~~~~~~~iP~l~~~p~~~l~~lEe~l~~ 279 (280)
T PF07651_consen 236 KQTEELKEFYEWCKSLGYFRSLEIPSLPHIPPSFLQALEEYLRD 279 (280)
T ss_dssp HHHHHHHHHHHHHHHCT--GGG-S--GGGS-CHHCCCCCHHHHC
T ss_pred HHHHHHHHHHHHHHhCCcccCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999988999999999999999999997
No 3
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=100.00 E-value=9.5e-43 Score=371.95 Aligned_cols=252 Identities=20% Similarity=0.292 Sum_probs=216.1
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
.++.+||.|||+.+|+|||+||||.||.+||++++ +..||...+|++..++.+.+||+|+++||+||||||++..+
T Consensus 5 ~~q~~av~KAis~~Et~~K~KH~Rt~I~gTh~eks----a~~FWt~ik~~PL~~~~VltwKfchllHKvLreGHpsal~e 80 (980)
T KOG0980|consen 5 RAQLEAVQKAISKDETPPKRKHVRTIIVGTHDEKS----SKIFWTTIKRQPLENHEVLTWKFCHLLHKVLREGHPSALEE 80 (980)
T ss_pred HHHHHHHHHHhccccCCCchhhhhheeeeeccccc----chhHHHHhhccccccchHHHHHHHHHHHHHHHcCCcchhHH
Confidence 56889999999999999999999999999999985 45799999999999999999999999999999999999888
Q ss_pred HHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHHHhhhccCc---cccCCC----------CCCCCChH-
Q 014021 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYD---IETDRP----------RTKDLDTA- 178 (432)
Q Consensus 113 l~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~~~r~~~~d---~~~e~~----------~~r~l~~e- 178 (432)
..+| ++++.+|+.+|++-+ .+||.+||.|++||..|+.||.+++.. ++...+ ...+++++
T Consensus 81 s~r~---r~~i~~l~r~w~~ls---~~Yg~lI~~Y~klL~~Kl~FH~k~p~FpGtle~s~~~l~~av~D~n~~feltvdm 154 (980)
T KOG0980|consen 81 SQRY---KKWITQLGRMWGHLS---DGYGPLIRAYVKLLHDKLSFHAKHPVFPGTLEYSDYQLLTAVDDLNNGFELTVDM 154 (980)
T ss_pred HHHH---HHHHHHHHHHhcccc---ccchHHHHHHHHHHHHHHhHhhcCCCCCCCccccHHHHHHHhccHHHHHHHHHHH
Confidence 8777 889999999998754 689999999999999999999987642 332211 33444443
Q ss_pred -HHHhhHHHHHHHHHHHHcccCCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 014021 179 -ELLEHLPALQLLLFRVLGCQPQGAA-VHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 256 (432)
Q Consensus 179 -~LL~~l~~LQ~Lld~ll~c~p~~~~-~~N~lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~~da~~aleiykrf 256 (432)
++++.+..||+.||+.+...+..+. .+++|++++|++||.||++||++++.+|.+|.+ .+ .+|+..++ ..||
T Consensus 155 md~~D~ll~lq~~vF~s~~s~r~~s~t~qgqCrlapLI~lIqds~~lY~y~vkmlfkLHs---~v-p~dtLegh--RdRf 228 (980)
T KOG0980|consen 155 MDYMDSLLELQQTVFSSMNSSRWVSLTPQGQCRLAPLIPLIQDSSGLYDYLVKMLFKLHS---QV-PPDTLEGH--RDRF 228 (980)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCcceehhHHHHHHHhhhhHHHHHHHHHHHHHc---CC-CHHHhhhH--HHHH
Confidence 7788888999999999986554443 588999999999999999999999865544331 22 47888776 6999
Q ss_pred HHHHHHHHHHHHHhhccccccC-ccccCCCCCChhhHH--HHHHHHH
Q 014021 257 GQQAERLSEFYEVCKSLDIGRG-ERFIKIEQPPASFLQ--AMEEYVK 300 (432)
Q Consensus 257 ~~Q~e~L~~Fy~~ck~l~~~r~-~~iP~L~~~P~~lL~--~LEeylr 300 (432)
..||++|++||+.|++++|++. ++||.||+-||+|+. .+++|+.
T Consensus 229 ~~qf~rLk~FY~~~S~lqYfk~LI~IP~LP~~~Pnf~~~sdl~~~~~ 275 (980)
T KOG0980|consen 229 HTQFERLKQFYADCSNLQYFKRLIQIPTLPEDAPNFLRQSDLESYIT 275 (980)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHhcCCCCCCCCcccccccchhhcCC
Confidence 9999999999999999999977 899999999999998 6999987
No 4
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. AP180 and CALM play important roles in clathrin-mediated endocytosis. AP180 is a brain-specific clathrin-binding protein which stimulates clathrin assembly during the recycling of synaptic vesicles. The ANTH domain is structurally similar to the VHS domain and is composed of a superhelix of eight alpha helices. ANTH domains bind both inositol phospholipids and proteins, and contribute to the nucleation and formation of clathrin coats on membranes. ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that the ANTH domain is a universal component of the machine
Probab=99.98 E-value=2.5e-32 Score=236.94 Aligned_cols=117 Identities=43% Similarity=0.718 Sum_probs=106.9
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVI 114 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel~ 114 (432)
+++||.|||+|+++|||+|||++|+.+|++++ .++.+|+++|.+|+.. +||+|+||+||++|+|||+|+|.|.++..
T Consensus 1 ~~~aV~kAT~~~~~~pk~k~v~~ii~~t~~~~--~~~~~~~~~l~~Rl~~-~~w~v~~K~LillH~llr~G~~~~~~~~~ 77 (117)
T cd03564 1 LEKAVKKATSHDEAPPKDKHVRKIIAGTSSSP--ASIPSFASALSRRLLD-RNWVVVLKALILLHRLLREGHPSFLQELL 77 (117)
T ss_pred CchHHHhhcCCCCCCCChHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 47899999999999999999999999998853 6789999999999986 99999999999999999999999987765
Q ss_pred HHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHHHh
Q 014021 115 NYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECF 158 (432)
Q Consensus 115 ~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~~~ 158 (432)
.+ ..+|++++|.|.+++.+|||+.|||.|++||++|++||
T Consensus 78 ~~----~~~l~l~~~~~~~~~~~~~~~~~Vr~Ya~yL~~rl~~~ 117 (117)
T cd03564 78 SR----RGWLNLSNFLDKSSSLGYGYSAFIRAYARYLDERLSFH 117 (117)
T ss_pred Hc----cCeeeccccccCCCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 43 46899999999877678999999999999999999986
No 5
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=99.95 E-value=1.1e-28 Score=216.65 Aligned_cols=125 Identities=35% Similarity=0.513 Sum_probs=111.2
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
++++++|.|||||++.|||+|||++|+.+|++++ .++..++..|.+||..++||+|++|+|++||+||++|++.+..+
T Consensus 1 ~~~e~~V~kAT~~~~~~p~~k~~~~I~~~t~~~~--~~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~~~~ 78 (127)
T smart00273 1 SDLEVKVRKATNNDEWGPKGKHLREIIQGTHNEK--SSFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRVILE 78 (127)
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHccCH--hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4789999999999999999999999999999874 57899999999999877799999999999999999999987655
Q ss_pred HHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHHHhhhccC
Q 014021 113 VINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKY 163 (432)
Q Consensus 113 l~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~~~r~~~~ 163 (432)
...+ +..+++|++|++. ++.+|||+.|||.|++||++|+.+++.++.
T Consensus 79 ~~~~---~~~i~~L~~f~~~-~~~~~d~g~~VR~ya~~L~~~l~~~~~l~~ 125 (127)
T smart00273 79 ALRN---RNRILNLSDFQDI-DSRGKDQGANIRTYAKYLLERLEDDRRLKE 125 (127)
T ss_pred HHHh---hHHHhhHhhCeec-CCCCeeCcHHHHHHHHHHHHHHcCHHHHhc
Confidence 5333 4468999999986 457899999999999999999999988764
No 6
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=99.38 E-value=3.4e-12 Score=111.91 Aligned_cols=117 Identities=23% Similarity=0.276 Sum_probs=91.4
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhh--ccCCChHHHHHHHHHHHHHHhhCCccc
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL--SKTHNWAVALKTLIVIHRALREVDPTF 109 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL--~kt~nwiValK~LillHrLLreG~p~f 109 (432)
|+++++-|.+||+.++.+|..+++.+|...|+.+ .+...++..|.+|| .+.++|.+++|+|.+||.|++.|++.|
T Consensus 1 ys~~e~~v~eAT~~d~~gp~~~~l~eIa~~t~~~---~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 1 YSELELKVREATSNDPWGPPGKLLAEIAQLTYNS---KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp --HHHHHHHHHTSSSSSS--HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 5789999999999999999999999999999886 35567888899999 357999999999999999999999998
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHH
Q 014021 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (432)
Q Consensus 110 ~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl 155 (432)
..++..+. ..|-.+.+|+. .++.+.+++.-||..|+-+.+-|
T Consensus 78 ~~~~~~~~---~~I~~l~~f~~-~d~~g~d~~~~VR~~A~~i~~lL 119 (125)
T PF01417_consen 78 VDELRDHI---DIIRELQDFQY-VDPKGKDQGQNVREKAKEILELL 119 (125)
T ss_dssp HHHHHHTH---HHHHGGGG----BBTTSTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhcceeec-cCCCCccHHHHHHHHHHHHHHHh
Confidence 87764332 23667788865 23356788899999999887755
No 7
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=99.18 E-value=1.6e-10 Score=99.56 Aligned_cols=111 Identities=25% Similarity=0.286 Sum_probs=89.4
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHHH
Q 014021 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVIN 115 (432)
Q Consensus 36 ~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel~~ 115 (432)
++.|.|||+++...|+.+++.+|...+.... .....++.+|.+||. .+||.|++|+|.++|.|+..|.+.|..++.
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~~--~~~~~~~~~l~kRl~-~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~- 77 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINETN--VGPKEAVDAIKKRIN-NKNPHVVLKALTLLEYCVKNCGERFHQEVA- 77 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCCC--ccHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHccHHHHHHHH-
Confidence 5789999999999999999999999997752 457889999999997 469999999999999999999998876653
Q ss_pred HhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHH
Q 014021 116 YGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEER 154 (432)
Q Consensus 116 ~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eR 154 (432)
++..+.++.+| +.....+.+.+..||.++++|.+.
T Consensus 78 ---~~~~~~~l~~~-~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 78 ---SNDFAVELLKF-DKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ---HhHHHHHHHHh-hccccccCCCChHHHHHHHHHHHH
Confidence 23334455454 222234456789999999999864
No 8
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=99.07 E-value=8.8e-10 Score=96.82 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~k-t~nwiValK~LillHrLLreG~p~f~eel 113 (432)
.++-|..|||+++.+|..+++.+|..+|++. .+...++..|.+||.. .++|.+++|+|+|++.||+.|++.|..++
T Consensus 2 ~e~~vreATs~d~wGp~~~~m~eIa~~t~~~---~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~ 78 (123)
T cd03571 2 AELKVREATSNDPWGPSGTLMAEIARATYNY---VEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDA 78 (123)
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5778999999999999999999999999875 3567889999999974 57999999999999999999999887776
Q ss_pred HHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHH
Q 014021 114 INYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (432)
Q Consensus 114 ~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl 155 (432)
...+. .|-.|.+|.-- ...+.|.+.-||.=|+-+.+-|
T Consensus 79 r~~~~---~i~~L~~F~~~-d~~g~d~G~~VR~ka~~i~~Ll 116 (123)
T cd03571 79 RENLY---IIRTLKDFQYI-DENGKDQGINVREKAKEILELL 116 (123)
T ss_pred HHhHH---HHHhhccceee-CCCCCchhHHHHHHHHHHHHHh
Confidence 43322 24455666421 1234588899998887765543
No 9
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=98.49 E-value=4e-07 Score=91.79 Aligned_cols=117 Identities=17% Similarity=0.166 Sum_probs=91.5
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhc-cCCChHHHHHHHHHHHHHHhhCCccc
Q 014021 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLS-KTHNWAVALKTLIVIHRALREVDPTF 109 (432)
Q Consensus 31 ~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~-kt~nwiValK~LillHrLLreG~p~f 109 (432)
+|++.++.|.-||+.+...|.-+++-+|-.+|+.. ..+..++..|.+|+. .-+||.+++|+|.||-.||..|+..|
T Consensus 18 ~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~---~e~~eIm~vi~kRl~d~gknWR~VyKaLtlleyLl~~GSErv 94 (336)
T KOG2056|consen 18 NYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNF---VEYQEIMDVLWKRLNDSGKNWRHVYKALTLLEYLLKNGSERV 94 (336)
T ss_pred cchHHHHHHHhccccccCCCchHHHHHHHHHhcCH---HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcCcHHH
Confidence 48999999999999999999999999999999986 467889999999997 47899999999999999999999877
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHH
Q 014021 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEER 154 (432)
Q Consensus 110 ~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eR 154 (432)
.+++...+- .|-.|..|.-- ...+.|.+.-||.-++-|..-
T Consensus 95 ~~~~ren~~---~I~tL~~Fq~i-D~~G~dqG~nVRkkak~l~~L 135 (336)
T KOG2056|consen 95 VDETRENIY---TIETLKDFQYI-DEDGKDQGLNVRKKAKELLSL 135 (336)
T ss_pred HHHHHhhhH---HHHHHhhceee-CCCCccchHHHHHHHHHHHHH
Confidence 665522211 12233445321 123467888899887776443
No 10
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=98.06 E-value=2.5e-05 Score=68.59 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=86.0
Q ss_pred HHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHHHHh
Q 014021 38 AIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVINYG 117 (432)
Q Consensus 38 AIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel~~~~ 117 (432)
.|.+||+.++.||--=-..+|...|+.+. ..+.+++..|.+||.+ ++..|-+|+|-+|-.|++.|++.|+.++...+
T Consensus 5 ll~~ATsdd~~p~pgy~~~Eia~~t~~s~--~~~~ei~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~ 81 (122)
T cd03572 5 LLSKATSDDDEPTPGYLYEEIAKLTRKSV--GSCQELLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS 81 (122)
T ss_pred HHHHHhcCCCCCCchHHHHHHHHHHHcCH--HHHHHHHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH
Confidence 57899999988777666679999998852 4677889999999975 67788899999999999999998876654432
Q ss_pred hcCCCccccccccCCCCC-CCCchhHhHHHHHHHHHH
Q 014021 118 RSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEE 153 (432)
Q Consensus 118 ~~r~~il~Ls~f~D~s~~-~~~d~s~fVR~Ya~YL~e 153 (432)
. .|-.+.+|+....+ .+++.+..||.=|+=|-.
T Consensus 82 ~---~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 82 A---QIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred H---HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 2 36677788865444 567888999987766554
No 11
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0012 Score=66.24 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=92.4
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHhhCCcc
Q 014021 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNWAVALKTLIVIHRALREVDPT 108 (432)
Q Consensus 31 ~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~k--t~nwiValK~LillHrLLreG~p~ 108 (432)
+|++.+.-|..||+.+...|.--.+-+|-.+|...- -.++..++..|..|+-+ ..+|.-++|+||++..||+.|...
T Consensus 20 NY~e~e~~VREATNdDPWGPsG~lMgeIaeaTfmry-~EdFpelmnmL~qRMLedNK~~WRRVYKSLiLLaYLikNGSER 98 (499)
T KOG2057|consen 20 NYPEAEMDVREATNDDPWGPSGPLMGEIAEATFMRY-MEDFPELMNMLFQRMLEDNKDAWRRVYKSLILLAYLIKNGSER 98 (499)
T ss_pred cchHHHHHHHhhccCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 589999999999999999999999999999986521 13577888999999852 468999999999999999999999
Q ss_pred cHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHH------HHHHHHhhh
Q 014021 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL------EERLECFRV 160 (432)
Q Consensus 109 f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL------~eRl~~~r~ 160 (432)
|+++...++-. -+-|.--+|.|.. +.|.+-.||.-.+-| +++|+.-|+
T Consensus 99 ~VqeAREh~Yd-LR~LEnYhfiDEh---GKDQGINIR~kVKeilEfanDDd~Lq~ERk 152 (499)
T KOG2057|consen 99 FVQEAREHAYD-LRRLENYHFIDEH---GKDQGINIRHKVKEILEFANDDDLLQAERK 152 (499)
T ss_pred HHHHHHHHHHH-HHhhhhccchhhh---CccccccHHHHHHHHHHHhccHHHHHHHHH
Confidence 88776433221 0112212455653 357778888877766 345555443
No 12
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.64 E-value=0.06 Score=48.66 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
++..|-|||+....-|+--.+-+|-....... .....++.+|.+||. .+|..|++.+|.++--++..+...|..++
T Consensus 1 ~e~~iekATse~l~~~dw~~il~icD~I~~~~--~~~k~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 1 FDDLVEKATDEKLTSENWGLILDVCDKVKSDE--NGAKDCLKAIMKRLN-HKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred ChHHHHHHcCccCCCcCHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 36789999999998899988888888776652 456899999999996 68999999999999999999988887665
No 13
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=95.59 E-value=0.082 Score=47.63 Aligned_cols=78 Identities=28% Similarity=0.396 Sum_probs=66.5
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
+.++..|-|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.++.-++..+...|..+
T Consensus 3 ~~~~~~I~kATs~~l~~~dw~~ileicD~In~~~--~~~k~a~ral~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 3 SEFDELIEKATSELLGEPDLASILEICDMIRSKD--VQPKYAMRALKKRLL-SKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred chHHHHHHHHcCcccCccCHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 5688999999999888899999888888876553 356889999999995 6999999999999999999977777665
Q ss_pred H
Q 014021 113 V 113 (432)
Q Consensus 113 l 113 (432)
+
T Consensus 80 v 80 (142)
T cd03569 80 V 80 (142)
T ss_pred H
Confidence 5
No 14
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.52 E-value=0.077 Score=47.38 Aligned_cols=79 Identities=25% Similarity=0.275 Sum_probs=64.6
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~e 111 (432)
...++..|.|||++...-|+--.+-.|........ .....++.+|.+||. .+|.-|.+-+|.++.-++..+.+.|..
T Consensus 3 ~~~~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~--~~~kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNcg~~f~~ 79 (140)
T PF00790_consen 3 SSSITELIEKATSESLPSPDWSLILEICDLINSSP--DGAKEAARALRKRLK-HGNPNVQLLALTLLDALVKNCGPRFHR 79 (140)
T ss_dssp CSHHHHHHHHHT-TTSSS--HHHHHHHHHHHHTST--THHHHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CChHHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 36788999999999988888888888888877662 456889999999996 599999999999999999999888866
Q ss_pred HH
Q 014021 112 EV 113 (432)
Q Consensus 112 el 113 (432)
++
T Consensus 80 ev 81 (140)
T PF00790_consen 80 EV 81 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.39 E-value=0.1 Score=46.95 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
++..|.|||+....-|+--++-+|....... | .....++.+|.+||. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~-~-~~~k~a~rai~krl~-~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKE-P-EGPQLAVRLLAHKIQ-SPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcC-C-ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 6788999999999999999999988888654 3 356789999999996 78999999999999999998888887665
No 16
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=95.33 E-value=0.12 Score=46.62 Aligned_cols=77 Identities=23% Similarity=0.230 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
++..|-|||+....-|+--.+-+|-....... .....++.+|.+||...+|..|++-+|.++--++..+...|..++
T Consensus 2 ~~~~IekATse~l~~~dw~~ileicD~In~~~--~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 2 VGQLIEKATDGSLQSEDWGLNMEICDIINETE--DGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HhHHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 46789999999988889888888888876542 456889999999997567999999999999999999988887665
No 17
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=95.05 E-value=0.13 Score=45.73 Aligned_cols=75 Identities=27% Similarity=0.266 Sum_probs=64.0
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 36 ~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
+..|.|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++.+|.++--++..+.+.|..++
T Consensus 2 ~~~i~kATs~~l~~~dw~~~l~icD~i~~~~--~~~k~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 2 ERLIDKATSPSLLEEDWELILEICDLINSTP--DGPKDAVRLLKKRLN-NKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred hhHHHHHcCcCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 5679999999988899999888888876652 456789999999996 79999999999999999999777776665
No 18
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=94.77 E-value=0.17 Score=44.74 Aligned_cols=75 Identities=17% Similarity=0.125 Sum_probs=63.5
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 36 ~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
+..|.|||+....-|+-.-+-+|........ .....++++|.+||. .+|..|++-+|.++--++..+.+.|..++
T Consensus 2 ~~~I~kATs~~~~~~D~~~il~icd~I~~~~--~~~k~a~raL~krl~-~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 2 TSLIERATSPSLEEPDWALNLELCDLINLKP--NGPKEAARAIRKKIK-YGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred hHHHHHHcCcccCCccHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 4679999999888888888888888876653 456889999999996 68999999999999999999988786555
No 19
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=84.22 E-value=5 Score=41.99 Aligned_cols=79 Identities=22% Similarity=0.322 Sum_probs=60.2
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~e 111 (432)
...++..|.|||+...+.=+=.+|-.+-...... | -.-..|+.+|.|||. +++.-|++-+|-++.-+...-...|+.
T Consensus 6 ~n~~e~~v~KAT~e~nT~enW~~IlDvCD~v~~~-~-~~~kd~lk~i~KRln-~~dphV~L~AlTLlda~~~NCg~~~r~ 82 (462)
T KOG2199|consen 6 ANPFEQDVEKATDEKNTSENWSLILDVCDKVGSD-P-DGGKDCLKAIMKRLN-HKDPHVVLQALTLLDACVANCGKRFRL 82 (462)
T ss_pred cchHHHHHHHhcCcccccccHHHHHHHHHhhcCC-C-cccHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHhcchHHHH
Confidence 4678899999999888766666665555554443 2 234789999999996 789999999999999888766556665
Q ss_pred HH
Q 014021 112 EV 113 (432)
Q Consensus 112 el 113 (432)
|+
T Consensus 83 EV 84 (462)
T KOG2199|consen 83 EV 84 (462)
T ss_pred HH
Confidence 54
No 20
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.45 E-value=31 Score=40.83 Aligned_cols=171 Identities=20% Similarity=0.197 Sum_probs=99.9
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCc--ccHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHH
Q 014021 74 CIHALAKRLSKTHNWAVALKTLIVIHRALREVDP--TFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFL 151 (432)
Q Consensus 74 ~~~~L~~RL~kt~nwiValK~LillHrLLreG~p--~f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL 151 (432)
++..|..|+. +-+.-|-.|.|-++||+.+.-.- .++++++.-.- +..- |-|..||.||.-|
T Consensus 360 ~le~l~erl~-Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~--------grl~--------DkSslVRk~Ai~L 422 (1251)
T KOG0414|consen 360 LLELLRERLL-DVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAI--------GRLE--------DKSSLVRKNAIQL 422 (1251)
T ss_pred HHHHHHHHhh-cccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHh--------cccc--------cccHHHHHHHHHH
Confidence 6777888985 67889999999999999987542 23333332211 1222 3457899999888
Q ss_pred HHHHHHhh----hccCcc-----cc-------CCC-----------CCCCCChHHHHhhHHHHH----HHHHHHHcccCC
Q 014021 152 EERLECFR----VLKYDI-----ET-------DRP-----------RTKDLDTAELLEHLPALQ----LLLFRVLGCQPQ 200 (432)
Q Consensus 152 ~eRl~~~r----~~~~d~-----~~-------e~~-----------~~r~l~~e~LL~~l~~LQ----~Lld~ll~c~p~ 200 (432)
.-.+--+. +++.+. +. +.. ..+....++++.+.+.-+ .+......|++.
T Consensus 423 l~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e 502 (1251)
T KOG0414|consen 423 LSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEE 502 (1251)
T ss_pred HHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchh
Confidence 76655422 122111 10 000 112222233444443333 222222333321
Q ss_pred C--------C-CcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014021 201 G--------A-AVHNFVI-QLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVC 270 (432)
Q Consensus 201 ~--------~-~~~N~lv-~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~~da~~aleiykrf~~Q~e~L~~Fy~~c 270 (432)
. + ...|+++ +-+++.-++|.++.-+.+.+++-.++...|.=+..|..++.+ ||-.|
T Consensus 503 ~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Id--------------fl~~c 568 (1251)
T KOG0414|consen 503 HCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAID--------------FLVRC 568 (1251)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH--------------HHHHH
Confidence 1 1 1233343 457777889999999999999999988888878888777664 55566
Q ss_pred hcccc
Q 014021 271 KSLDI 275 (432)
Q Consensus 271 k~l~~ 275 (432)
+..|+
T Consensus 569 ~~F~I 573 (1251)
T KOG0414|consen 569 KQFGI 573 (1251)
T ss_pred HHhCC
Confidence 66655
No 21
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=60.84 E-value=79 Score=33.79 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 014021 243 RHDALKALDIYRRAGQQAERLSEFYEVCKSLDI 275 (432)
Q Consensus 243 ~~da~~aleiykrf~~Q~e~L~~Fy~~ck~l~~ 275 (432)
+++..+..+..+.+.++.-++..|=+.=|+..+
T Consensus 101 KPds~elad~LkPI~e~i~eI~~fkE~nRkS~~ 133 (480)
T KOG2675|consen 101 KPDSNELADLLKPINEEIGEINNFKEKNRKSPF 133 (480)
T ss_pred CCChHHHHHHhhhHHHhhhHHhhhhhcccCchH
Confidence 567777777778888877777766555443333
No 22
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.13 E-value=61 Score=35.04 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=52.9
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
+...|-|||+..-.-|+=-..-+|-....... ......+++|.||++ .++-.|++=+|.+|--|+..-...|..+
T Consensus 2 v~~~IdkAT~~~l~~pDWa~NleIcD~IN~~~--~~~~eAvralkKRi~-~k~s~vq~lALtlLE~cvkNCG~~fh~~ 76 (470)
T KOG1087|consen 2 VGKLIDKATSESLAEPDWALNLEICDLINSTE--GGPKEAVRALKKRLN-SKNSKVQLLALTLLETCVKNCGYSFHLQ 76 (470)
T ss_pred hHHHHHHhhcccccCccHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45789999999887788766555544443332 234578999999997 3555888889999998887654455433
No 23
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=43.64 E-value=23 Score=26.68 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 014021 233 NLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIG 276 (432)
Q Consensus 233 ~LLe~fFeM~~~da~~aleiykrf~~Q~e~L~~Fy~~ck~l~~~ 276 (432)
.-|..||.|+..||-+.|++-....| ..|+.+|+.
T Consensus 8 ~~L~~~fhlp~~eAA~~Lgv~~T~LK---------r~CR~~GI~ 42 (52)
T PF02042_consen 8 EDLSQYFHLPIKEAAKELGVSVTTLK---------RRCRRLGIP 42 (52)
T ss_pred HHHHHHhCCCHHHHHHHhCCCHHHHH---------HHHHHcCCC
Confidence 34678999999999999986554444 458888864
No 24
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=39.26 E-value=1.3e+02 Score=36.00 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhcc
Q 014021 208 VIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQAE--------------RLSEFYEVCKSL 273 (432)
Q Consensus 208 lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~~da~~aleiykrf~~Q~e--------------~L~~Fy~~ck~l 273 (432)
+-..+|....+|+..||+.|-| ||-.+|+-.-.+ ...++|-.||.+.. ++..|+.-|.+-
T Consensus 447 ~f~~~lk~rr~e~~~vI~~IGD----lLl~~FsGe~ae--~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~ 520 (1167)
T KOG3520|consen 447 SFLQRLKERRKESLVVIKRIGD----LLLDQFSGENAE--RLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESN 520 (1167)
T ss_pred HHHHHHHHHHHhccchHHHHHH----HHHHHcCchHHH--HHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcc
Confidence 4466777888888887777766 444567665433 33456777766443 444566555444
Q ss_pred ccccCcccc
Q 014021 274 DIGRGERFI 282 (432)
Q Consensus 274 ~~~r~~~iP 282 (432)
-++|..++|
T Consensus 521 p~cRRL~lk 529 (1167)
T KOG3520|consen 521 PVCRRLGLK 529 (1167)
T ss_pred hHHHhhcch
Confidence 455554443
No 25
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.67 E-value=54 Score=35.66 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=42.8
Q ss_pred hHHHHhhHHHHHHHHHHHHcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 014021 177 TAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRA 256 (432)
Q Consensus 177 ~e~LL~~l~~LQ~Lld~ll~c~p~~~~~~N~lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~~da~~aleiykrf 256 (432)
.+++|..+.-..++..+-+.+.|...+=...+. |++-+.+-.+|-.||.||
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~-----------------------------fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK-----------------------------FELRYKEIERARSIYERF 200 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH-----------------------------HHHHhhHHHHHHHHHHHH
Confidence 356777788888888888888886543221111 566666666666677777
Q ss_pred HHHHHHHHHHHHHhh
Q 014021 257 GQQAERLSEFYEVCK 271 (432)
Q Consensus 257 ~~Q~e~L~~Fy~~ck 271 (432)
.-.+-++..|..++|
T Consensus 201 V~~HP~v~~wikyar 215 (677)
T KOG1915|consen 201 VLVHPKVSNWIKYAR 215 (677)
T ss_pred heecccHHHHHHHHH
Confidence 666666666666554
No 26
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=31.85 E-value=36 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014021 246 ALKALDIYRRAGQQAERLSEFYEVCK 271 (432)
Q Consensus 246 a~~aleiykrf~~Q~e~L~~Fy~~ck 271 (432)
-.+|=.||.||...+-.+..+..+|+
T Consensus 3 ~dRAR~IyeR~v~~hp~~k~WikyAk 28 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPEVKNWIKYAK 28 (32)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34566789999999888888888876
No 27
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=28.68 E-value=1e+02 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=16.4
Q ss_pred cccCCCCCC-----hhhHH----HHHHHHHh
Q 014021 280 RFIKIEQPP-----ASFLQ----AMEEYVKE 301 (432)
Q Consensus 280 ~iP~L~~~P-----~~lL~----~LEeylrd 301 (432)
++|.|+..| +.+++ .||+||+.
T Consensus 90 ~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~ 120 (140)
T cd06895 90 RLPSLPALPDILVSEEQLDSRKKQLENYLQN 120 (140)
T ss_pred cCCCCCCccccccCHHHHHHHHHHHHHHHHH
Confidence 477777555 55666 79999998
No 28
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=28.00 E-value=33 Score=28.02 Aligned_cols=11 Identities=36% Similarity=0.806 Sum_probs=8.3
Q ss_pred HHHHHHhhC-Cc
Q 014021 97 VIHRALREV-DP 107 (432)
Q Consensus 97 llHrLLreG-~p 107 (432)
++|||||+| .|
T Consensus 58 ILHrLLQng~SP 69 (78)
T PF08832_consen 58 ILHRLLQNGNSP 69 (78)
T ss_dssp HHHHHHHCS---
T ss_pred HHHHHHhcCCCH
Confidence 589999999 45
No 29
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.17 E-value=2.4e+02 Score=30.40 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=58.4
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~e 111 (432)
...|+.=|.|||+....--+=|++.-++.-.... | ....-.+|.|+..++.-..| -|+-+|.++..+++.|...|.+
T Consensus 6 ~~sle~wlnrATdp~~~eedw~ai~~fceqinkd-p-~gp~lAv~LlaHKiqSPqe~-EAl~altvLe~cmkncGekfH~ 82 (594)
T KOG1086|consen 6 VESLEYWLNRATDPSNDEEDWKAIDGFCEQINKD-P-EGPLLAVRLLAHKIQSPQEW-EALQALTVLEYCMKNCGEKFHE 82 (594)
T ss_pred cccHHHHHHhccCccchHHHHHHHHHHHHHHhcC-C-CCchhHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhhhHHHHH
Confidence 3568889999999987544556666666555543 2 12233578899898744444 6888999999999999988887
Q ss_pred HHHHH
Q 014021 112 EVINY 116 (432)
Q Consensus 112 el~~~ 116 (432)
++-+|
T Consensus 83 evgkf 87 (594)
T KOG1086|consen 83 EVGKF 87 (594)
T ss_pred HHHHH
Confidence 77544
No 30
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.99 E-value=9.7e+02 Score=28.02 Aligned_cols=13 Identities=38% Similarity=0.744 Sum_probs=10.1
Q ss_pred HHHHHHHcccCCC
Q 014021 189 LLLFRVLGCQPQG 201 (432)
Q Consensus 189 ~Lld~ll~c~p~~ 201 (432)
+||.+++.|||..
T Consensus 144 qLlsalls~r~~e 156 (970)
T KOG0946|consen 144 QLLSALLSCRPTE 156 (970)
T ss_pred HHHHHHHhcCCHH
Confidence 4778888898865
No 31
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription]
Probab=23.04 E-value=2.4e+02 Score=28.80 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH-------HHHHHH--HHHHhhccccccCc-cccCCCC
Q 014021 217 ASESTKIYQAISDGTVNLVDKFFEMQRHDALKALDIYRRAGQQ-------AERLSE--FYEVCKSLDIGRGE-RFIKIEQ 286 (432)
Q Consensus 217 vkDs~~LY~~i~~gii~LLe~fFeM~~~da~~aleiykrf~~Q-------~e~L~~--Fy~~ck~l~~~r~~-~iP~L~~ 286 (432)
++..|+.+..++|++ .+....+.+|-+||+++..+ .+.|.. .|-.||+.+.-|.+ +|-.+-+
T Consensus 104 ~~~a~~~I~~m~d~~--------~Lp~~I~d~A~~ifk~v~~~k~lrGks~eai~AAclyiACRq~~~pRT~kEI~~~an 175 (308)
T KOG1597|consen 104 LKAAFKEITAMCDRL--------SLPATIKDRANEIFKLVEDSKLLRGKSVEALAAACLYIACRQEDVPRTFKEISAVAN 175 (308)
T ss_pred HHHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHHHHhhhhcCccHHHHHHHHHHHHHHhcCCCchHHHHHHHHc
Confidence 344556666777653 67888899999999999855 333333 78889999998886 6777778
Q ss_pred CChhhHHH
Q 014021 287 PPASFLQA 294 (432)
Q Consensus 287 ~P~~lL~~ 294 (432)
++.+-+.-
T Consensus 176 v~kKEIgr 183 (308)
T KOG1597|consen 176 VSKKEIGR 183 (308)
T ss_pred CCHHHHHH
Confidence 88776663
Done!