Query 014021
Match_columns 432
No_of_seqs 222 out of 548
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014021.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014021hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hx8_A Synapse-enriched clathr 100.0 1.8E-74 6.3E-79 573.6 30.3 276 8-301 6-298 (299)
2 3zym_A Phosphatidylinositol-bi 100.0 9.2E-70 3.2E-74 541.8 25.6 277 8-301 11-291 (310)
3 3zyl_A Phosphatidylinositol-bi 100.0 3.9E-67 1.3E-71 513.9 24.7 255 8-278 11-269 (271)
4 1eyh_A Epsin; superhelix of he 99.5 6.2E-14 2.1E-18 124.9 11.2 119 31-156 2-121 (144)
5 1inz_A EPS15-interacting porte 99.5 2E-14 6.8E-19 128.6 7.8 119 31-156 20-139 (148)
6 1xgw_A Epsin 4; ENTH, enthopro 99.2 9.4E-11 3.2E-15 107.5 12.9 118 31-155 31-150 (176)
7 3onk_A Epsin-3, ENT3; helix, p 99.2 4.9E-11 1.7E-15 106.8 10.6 121 28-155 5-127 (150)
8 1vdy_A Hypothetical protein (R 98.4 2.6E-06 8.9E-11 75.3 11.2 115 36-155 13-128 (140)
9 1juq_A ADP-ribosylation factor 95.8 0.024 8.1E-07 51.3 8.0 79 32-113 11-89 (171)
10 1elk_A Target of MYB1; superhe 95.7 0.039 1.3E-06 49.1 9.0 79 33-113 15-93 (157)
11 3ldz_A STAM-1, signal transduc 95.6 0.046 1.6E-06 47.7 8.8 78 33-113 4-81 (140)
12 3rru_A TOM1L1 protein; structu 95.5 0.056 1.9E-06 48.0 8.9 79 33-113 15-93 (152)
13 1x5b_A Signal transducing adap 95.3 0.051 1.8E-06 48.7 8.3 78 33-113 14-91 (163)
14 3g2s_A C-terminal fragment of 95.3 0.084 2.9E-06 46.7 9.6 79 32-113 9-87 (149)
15 1mhq_A ADP-ribosylation factor 95.2 0.059 2E-06 47.6 8.2 76 35-113 2-77 (148)
16 3zyq_A Hepatocyte growth facto 94.9 0.089 3.1E-06 49.5 9.1 79 32-113 6-84 (226)
17 1dvp_A HRS, hepatocyte growth 94.3 0.14 4.7E-06 47.8 8.7 77 34-113 5-81 (220)
18 3bej_E Nuclear receptor coacti 67.3 2.4 8.3E-05 26.0 1.5 12 97-108 14-25 (26)
19 2prg_C Nuclear receptor coacti 39.2 12 0.00041 29.8 1.6 12 97-108 67-78 (88)
20 2i9c_A Hypothetical protein RP 22.7 86 0.003 26.5 4.2 69 232-301 12-99 (123)
No 1
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=100.00 E-value=1.8e-74 Score=573.55 Aligned_cols=276 Identities=24% Similarity=0.433 Sum_probs=242.8
Q ss_pred hHHHHHHhhhc-cccchhhhhhcCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCC
Q 014021 8 KSFRKALGALK-DTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTH 86 (432)
Q Consensus 8 ~~~rka~ga~K-D~~siglakv~~~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~ 86 (432)
|+||+++|++| |+|+. ++++||+|||+|+++|||+||||+||.+|+.++ +++++|+++|.+|+ +++
T Consensus 6 ~~~~~~~~a~k~~~~~~----------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~--~~~~~~~~~L~~R~-~~~ 72 (299)
T 1hx8_A 6 QTINDRLLAARHSLAGQ----------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPN--VSIPHLANLLIERS-QNA 72 (299)
T ss_dssp ----------------C----------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHH-TCS
T ss_pred HHHHHHHHHHhhccchh----------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCC--CCHHHHHHHHHhhc-cCC
Confidence 69999999999 98884 566899999999999999999999999999875 68899999999995 799
Q ss_pred ChHHHHHHHHHHHHHHhhCCcccHHHHHHHhhcCCCccccccccCCCC-----------CCCCchhHhHHHHHHHHHHHH
Q 014021 87 NWAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSS-----------PNAWDYSAWVRSYALFLEERL 155 (432)
Q Consensus 87 nwiValK~LillHrLLreG~p~f~eel~~~~~~r~~il~Ls~f~D~s~-----------~~~~d~s~fVR~Ya~YL~eRl 155 (432)
||+|+||+||++|||||||||.|.+++ ++++++|+|++|+|.++ +.+||||+|||+|++||++|+
T Consensus 73 ~w~va~K~LivlH~llreG~~~~~~~l----~~~~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~~r~ 148 (299)
T 1hx8_A 73 NWVVVYKSLITTHHLMAYGNERFMQYL----ASSNSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLNEKS 148 (299)
T ss_dssp SHHHHHHHHHHHHHHHHHSCHHHHHHH----HHTTCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHH----HhCCcccchhhhhcccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999987665 33667999999999865 356899999999999999999
Q ss_pred HHhhhccCccccC-----CCCCCCCChHHHHhhHHHHHHHHHHHHcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014021 156 ECFRVLKYDIETD-----RPRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDG 230 (432)
Q Consensus 156 ~~~r~~~~d~~~e-----~~~~r~l~~e~LL~~l~~LQ~Lld~ll~c~p~~~~~~N~lv~~Al~llvkDs~~LY~~i~~g 230 (432)
.+|+..++|++.. ..++++|+++.||++++.||+|||++++|+|.+.+.+|+|+++||++||+||++||+++|+|
T Consensus 149 ~~f~~~~~d~~~~~~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al~llv~Ds~~lY~~i~~g 228 (299)
T 1hx8_A 149 LSYRAMAFDFCKVKRGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDG 228 (299)
T ss_dssp HHHHHHSSCGGGC-----CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccccCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889899988642 23789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccCCCCCChhhHHHHHHHHHh
Q 014021 231 TVNLVDKFFEMQRHDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (432)
Q Consensus 231 ii~LLe~fFeM~~~da~~aleiykrf~~Q~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEeylrd 301 (432)
|+||||+||+|++.||++||+||+||.+|+++|++||++||+++|++ ++||+|+++|++|+++|||||++
T Consensus 229 i~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~~Lee~l~~ 298 (299)
T 1hx8_A 229 IINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT 298 (299)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999977 89999999999999999999986
No 2
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=100.00 E-value=9.2e-70 Score=541.84 Aligned_cols=277 Identities=23% Similarity=0.443 Sum_probs=237.2
Q ss_pred hHHHHHHhhhccccchhhhhhcCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCC
Q 014021 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (432)
Q Consensus 8 ~~~rka~ga~KD~~siglakv~~~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~n 87 (432)
++++.-+.|.|.. |.+ +++++||+|||+|+++|||+|||++||.+|++++ .++.+|+++|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~~-------~~~--s~l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~--~~~~~i~~~L~~Rl~-~~~ 78 (310)
T 3zym_A 11 QSLTDRITAAQHS-------VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (310)
T ss_dssp -CHHHHHHHHHHC-------CHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHhc-------ccc--cHHHHHHHhcCcCCCCCCChhHHHHHHHHHccCC--CcHHHHHHHHHhhcC-CCc
Confidence 4677766666652 333 8999999999999999999999999999999875 678999999999998 899
Q ss_pred hHHHHHHHHHHHHHHhhCCcccHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHHHhhhccCcccc
Q 014021 88 WAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 167 (432)
Q Consensus 88 wiValK~LillHrLLreG~p~f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~~~r~~~~d~~~ 167 (432)
|+|+||+||++|+|||+|||.|.+ |+++++++|+|++|+|++++.+|||++|||+|++||++|+.+|+.+++|++.
T Consensus 79 w~vv~KaLivlH~llreG~~~~l~----~~~~~~~~~~Ls~f~d~~~~~g~~~~~~Ir~Ya~yL~~Rl~~f~~~~~d~~~ 154 (310)
T 3zym_A 79 WVVVFKSLITTHHLMVYGNERFIQ----YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHH----HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHH----HHHhCCCeeecccccCCCCcCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999999998754 4455668999999999887778999999999999999999999999999874
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHHcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 014021 168 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 243 (432)
Q Consensus 168 e~----~~~r~l~~e~LL~~l~~LQ~Lld~ll~c~p~~~~~~N~lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~ 243 (432)
.+ .++++|+++.||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+||++|||+||+|++
T Consensus 155 ~~~~~~~~~r~~~~~~Ll~~l~~lQ~lid~ll~~~~~~~~~~N~l~~~A~~llv~ds~~lY~~inegii~lLe~ffem~~ 234 (310)
T 3zym_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (310)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTSCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCH
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 32 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCccccCCCCCChhhHHHHHHHHHh
Q 014021 244 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRGERFIKIEQPPASFLQAMEEYVKE 301 (432)
Q Consensus 244 ~da~~aleiykrf~~Q~e~L~~Fy~~ck~l~~~r~~~iP~L~~~P~~lL~~LEeylrd 301 (432)
.||++||+||+||.+|+++|++||++||++|+.+. +||+|+++|++++..++.-|.+
T Consensus 235 ~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~-~iP~L~~~p~d~l~~lq~~i~e 291 (310)
T 3zym_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG-DISGSGSGHMDRVRNLQSEVEG 291 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCCCCcccchHHHHHHHHHHH
Confidence 99999999999999999999999999999997665 9999999999999999998887
No 3
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=100.00 E-value=3.9e-67 Score=513.88 Aligned_cols=255 Identities=25% Similarity=0.483 Sum_probs=233.9
Q ss_pred hHHHHHHhhhccccchhhhhhcCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCC
Q 014021 8 KSFRKALGALKDTTTVSLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHN 87 (432)
Q Consensus 8 ~~~rka~ga~KD~~siglakv~~~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~n 87 (432)
|+++.-+.+.|.. |.+ +++++||+|||+|+++|||+||||+||.+|+.++ .++.++++.|.+|++ ++|
T Consensus 11 ~~~~~~~~~~~~~-------~~~--s~l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~--~~~~~~~~~L~~Rl~-~~~ 78 (271)
T 3zyl_A 11 QSLTDRITAAQHS-------VTG--SAVSKTVCKATTHEIMGPKKKHLDYLIQCTNEMN--VNIPQLADSLFERTT-NSS 78 (271)
T ss_dssp -CHHHHHHHHHHH-------HHH--HHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTT--SCHHHHHHHHHHHTT-SSC
T ss_pred ccHHHHHHHHHhc-------ccc--hHHHHHHHhcCCCCCCCCCHHHHHHHHHHHccCC--CcHHHHHHHHHHHhC-CCc
Confidence 5777777666652 334 8999999999999999999999999999999875 678999999999998 899
Q ss_pred hHHHHHHHHHHHHHHhhCCcccHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHHHhhhccCcccc
Q 014021 88 WAVALKTLIVIHRALREVDPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDIET 167 (432)
Q Consensus 88 wiValK~LillHrLLreG~p~f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~~~r~~~~d~~~ 167 (432)
|+|+||+||++|+|||+|||.|.+ |+++++++|+|++|+|++++.+|||++|||+|++||++|+.+|+..++|++.
T Consensus 79 w~v~~KaLivlH~llreG~~~~l~----~~~~~~~~~~Ls~f~d~~~~~~~~~s~~Ir~Ya~yL~eRl~~f~~~~~d~~~ 154 (271)
T 3zyl_A 79 WVVVFKSLITTHHLMVYGNERFIQ----YLASRNTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQVAFDFTK 154 (271)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHH----HHHHCSCCCCCTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTT
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHH----HHHhCCCeechhccCCCCCCCcccccHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 999999999999999999998754 4455678999999999987778999999999999999999999999999875
Q ss_pred CC----CCCCCCChHHHHhhHHHHHHHHHHHHcccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Q 014021 168 DR----PRTKDLDTAELLEHLPALQLLLFRVLGCQPQGAAVHNFVIQLALSLVASESTKIYQAISDGTVNLVDKFFEMQR 243 (432)
Q Consensus 168 e~----~~~r~l~~e~LL~~l~~LQ~Lld~ll~c~p~~~~~~N~lv~~Al~llvkDs~~LY~~i~~gii~LLe~fFeM~~ 243 (432)
.+ .++++|++++||++++.||+|||++++|+|.+.+.+|+|+++||++||+|||+||+++|+||+||||+||+|++
T Consensus 155 ~k~~~~~~~r~~~~~~Ll~~l~~lQ~lld~ll~~~~~~~~~~N~li~~A~~lLv~es~~lY~~in~gii~lLe~ffem~~ 234 (271)
T 3zyl_A 155 VKRGADGVMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKK 234 (271)
T ss_dssp SCCSTTSHHHHCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred cCCCCCCccccCCHHHHHHHHHHHHHHHHHHHccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 32 26788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 014021 244 HDALKALDIYRRAGQQAERLSEFYEVCKSLDIGRG 278 (432)
Q Consensus 244 ~da~~aleiykrf~~Q~e~L~~Fy~~ck~l~~~r~ 278 (432)
.||++||+||+||.+|+++|++||++||++|++|+
T Consensus 235 ~da~~aleiykrf~~Q~~~L~~Fy~~ck~~gi~~~ 269 (271)
T 3zyl_A 235 NQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRG 269 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcC
Confidence 99999999999999999999999999999999886
No 4
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=99.51 E-value=6.2e-14 Score=124.92 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=97.9
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCccc
Q 014021 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (432)
Q Consensus 31 ~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~k-t~nwiValK~LillHrLLreG~p~f 109 (432)
+|++.++.|..|||++..+|+.+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+|+|.||+.|++.|
T Consensus 2 ~ys~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 2 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp CCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 58999999999999999999999999999999874 4678899999999973 4699999999999999999999987
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHH
Q 014021 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (432)
Q Consensus 110 ~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~ 156 (432)
..++...+ ..|..|.+|.-. ...+.|++..||.||++|.+-|.
T Consensus 79 v~~~~~~~---~~i~~L~~F~y~-d~~g~D~G~~VR~kak~l~~Ll~ 121 (144)
T 1eyh_A 79 SQQCKENM---YAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 121 (144)
T ss_dssp HHHHHHTH---HHHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh---HHHhhhccceee-CCCccchHHHHHHHHHHHHHHHC
Confidence 66553332 236678887421 12467899999999999965443
No 5
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=99.51 E-value=2e-14 Score=128.64 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=98.6
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhcc-CCChHHHHHHHHHHHHHHhhCCccc
Q 014021 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK-THNWAVALKTLIVIHRALREVDPTF 109 (432)
Q Consensus 31 ~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~k-t~nwiValK~LillHrLLreG~p~f 109 (432)
++++.++.|..||+++..+|+.+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+|+|.||+.|++.|
T Consensus 20 ~~s~~E~~VreAT~~d~wGP~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v 96 (148)
T 1inz_A 20 NYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNV---VAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV 96 (148)
T ss_dssp SCCCHHHHHHHHSCCCSCCCCSCHHHHHHHHHTSS---HHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---hhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH
Confidence 58999999999999999999999999999999985 4678899999999973 4799999999999999999999887
Q ss_pred HHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHHH
Q 014021 110 HEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLE 156 (432)
Q Consensus 110 ~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl~ 156 (432)
..++...+ ..|..|.+|.-- ...+.|.+..||.||++|.+-|.
T Consensus 97 v~~~r~~~---~~I~~L~~F~y~-d~~g~D~G~nVR~kAk~l~~LL~ 139 (148)
T 1inz_A 97 SQQCKENM---YAVQTLKDFQYV-DRDGKDQGVNVREKAKQLVALLR 139 (148)
T ss_dssp HHHHHHTH---HHHHHHHHCCCC-CSSCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhH---HHHHhhcceeee-CCCCcCchHHHHHHHHHHHHHhC
Confidence 66553322 136677776321 12457899999999999988654
No 6
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=99.22 E-value=9.4e-11 Score=107.48 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=95.2
Q ss_pred CCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhh-c-cCCChHHHHHHHHHHHHHHhhCCcc
Q 014021 31 DYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRL-S-KTHNWAVALKTLIVIHRALREVDPT 108 (432)
Q Consensus 31 ~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL-~-kt~nwiValK~LillHrLLreG~p~ 108 (432)
++++.++.|..|||.+..+|..+++.+|..+|+.. .++..++..|.+|+ . ..++|.+++|+|+|++.||+.|++.
T Consensus 31 ~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~---~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~ 107 (176)
T 1xgw_A 31 NYSEIESKVREATNDDPWGPSGQLMGEIAKATFMY---EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSER 107 (176)
T ss_dssp CCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT---TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999986 46788999999996 4 3589999999999999999999987
Q ss_pred cHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHH
Q 014021 109 FHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (432)
Q Consensus 109 f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl 155 (432)
|.+++...+. .|-.|.+|.-- ...+.|.+..||..|+.|.+-|
T Consensus 108 vv~~~r~~i~---~I~~L~~F~y~-D~~G~D~G~~VR~kAk~i~~LL 150 (176)
T 1xgw_A 108 VVTSAREHIY---DLRSLENYHFV-DEHGKDQGINIRQKVKELVEFA 150 (176)
T ss_dssp HHHHHHHTHH---HHHGGGGCCCB-CTTSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH---HHHhhccCeeE-CCCCCChHHHHHHHHHHHHHHH
Confidence 7666532221 13346677421 1245789999999999995543
No 7
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=99.21 E-value=4.9e-11 Score=106.79 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=94.1
Q ss_pred hcCCCchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhcc--CCChHHHHHHHHHHHHHHhhC
Q 014021 28 VNSDYKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSK--THNWAVALKTLIVIHRALREV 105 (432)
Q Consensus 28 v~~~~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~k--t~nwiValK~LillHrLLreG 105 (432)
|.-+|++.++.|..||+.+..+|..+++.+|..+|++. .++..++..|.+||.. .++|.+++|+|+|++.||+.|
T Consensus 5 ~v~~ys~~E~kVreAT~nd~wGp~~~~m~eIa~~T~~~---~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nG 81 (150)
T 3onk_A 5 VDPNYTEMEGKVREATNNEPWGASSTLMDQISQGTYNF---REREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHG 81 (150)
T ss_dssp ---CCCHHHHHHHHHTSSCSSCCCHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHhCCCCCCcCHHHHHHHHHHhCCH---HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhC
Confidence 33468999999999999999999999999999999975 4677889999999974 358999999999999999999
Q ss_pred CcccHHHHHHHhhcCCCccccccccCCCCCCCCchhHhHHHHHHHHHHHH
Q 014021 106 DPTFHEEVINYGRSRSHMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERL 155 (432)
Q Consensus 106 ~p~f~eel~~~~~~r~~il~Ls~f~D~s~~~~~d~s~fVR~Ya~YL~eRl 155 (432)
++.|..++..++. .|-.|.+|.-.. ..+.|++.-||..|+.|.+-|
T Consensus 82 se~vv~~~r~~~~---~i~~L~~F~~~d-~~G~D~G~~VR~kak~l~~LL 127 (150)
T 3onk_A 82 SERFIDDTRNSIN---LIRILETFHYID-SQGRDQGINVRTRVKALIELL 127 (150)
T ss_dssp CHHHHHHHHTTHH---HHHGGGGCCCBC-TTSCBCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---HHHhhhcccccC-CCCCchHHHHHHHHHHHHHHH
Confidence 9877665532211 133466664211 245689999999999985543
No 8
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.36 E-value=2.6e-06 Score=75.26 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=90.7
Q ss_pred HHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHHHH
Q 014021 36 DIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEVIN 115 (432)
Q Consensus 36 ~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel~~ 115 (432)
.+.|.+||+.++.||----+.+|-..|+.+. ...+..++..|.+||. .++|.|.+|+|-+|-.|++.|++.|+.++..
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~-~~~~~eim~~L~kRL~-~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~ 90 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSH-VSIVKEFSEFILKRLD-NKSPIVKQKALRLIKYAVGKSGSEFRREMQR 90 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhc-CCCcceeehHHHHHHHHHHhCCHHHHHHHHH
Confidence 4679999999999988888899999998863 1124678889999997 4789999999999999999999988776643
Q ss_pred HhhcCCCccccccccCCCCC-CCCchhHhHHHHHHHHHHHH
Q 014021 116 YGRSRSHMLNMAHFKDDSSP-NAWDYSAWVRSYALFLEERL 155 (432)
Q Consensus 116 ~~~~r~~il~Ls~f~D~s~~-~~~d~s~fVR~Ya~YL~eRl 155 (432)
.+. .|-.+.+|+....+ .+.+.+..||.-|+=|.+-|
T Consensus 91 ~~~---~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 91 NSV---AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp TTH---HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 322 26667788755433 46789999999988776643
No 9
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=95.82 E-value=0.024 Score=51.33 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=67.2
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~e 111 (432)
.+.++..|-|||+....-|+--.+-+|........ .....++++|.+||. .+|-.|++-+|.++.-|+..+.+.|..
T Consensus 11 ~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~--~~~k~A~ral~krl~-~~n~~vql~AL~LLd~~vkNCG~~Fh~ 87 (171)
T 1juq_A 11 GESLESWLNKATNPSNRQEDWEYIIGFCDQINKEL--EGPQIAVRLLAHKIQ-SPQEWEALQALTVLEACMKNCGRRFHN 87 (171)
T ss_dssp -CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 36789999999999988899999999888887653 356789999999996 689999999999999999998777765
Q ss_pred HH
Q 014021 112 EV 113 (432)
Q Consensus 112 el 113 (432)
++
T Consensus 88 ev 89 (171)
T 1juq_A 88 EV 89 (171)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 10
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=95.74 E-value=0.039 Score=49.10 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=67.3
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
..++..|-|||+....-|+--.+-+|........ .....++++|.+||...+|.-|++-+|.++.-++..+.+.|..+
T Consensus 15 s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~e 92 (157)
T 1elk_A 15 SPVGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVL 92 (157)
T ss_dssp SHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred cHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 3789999999999988889888888888776653 45688999999999645899999999999999999988888766
Q ss_pred H
Q 014021 113 V 113 (432)
Q Consensus 113 l 113 (432)
+
T Consensus 93 v 93 (157)
T 1elk_A 93 V 93 (157)
T ss_dssp H
T ss_pred H
Confidence 5
No 11
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=95.61 E-value=0.046 Score=47.72 Aligned_cols=78 Identities=19% Similarity=0.346 Sum_probs=66.8
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
..++..|-|||+....-|+--++-+|........ .....++.+|.+||. .+|..|++-+|.++.-++..+.+.|..+
T Consensus 4 ~p~d~~iekAT~~~l~~~dw~~ileicD~I~~~~--~~~k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~e 80 (140)
T 3ldz_A 4 NPFDQDVEKATSEMNTAEDWGLILDICDKVGQSR--TGPKDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLE 80 (140)
T ss_dssp CTTHHHHHHHTCTTSSSCCHHHHHHHHHHHTTST--THHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--cCHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4578899999999988899999999888887653 456789999999996 5789999999999999999998888655
Q ss_pred H
Q 014021 113 V 113 (432)
Q Consensus 113 l 113 (432)
+
T Consensus 81 v 81 (140)
T 3ldz_A 81 V 81 (140)
T ss_dssp H
T ss_pred H
Confidence 4
No 12
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=95.48 E-value=0.056 Score=48.01 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=68.2
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
+.++..|-|||+....-|+--.+-+|-....... .....++.+|.+||...+|..|++-+|.++.-++..+...|..+
T Consensus 15 t~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~e 92 (152)
T 3rru_A 15 TSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSL 92 (152)
T ss_dssp SHHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6789999999999998899999888888876653 45688999999999755688899999999999999999888776
Q ss_pred H
Q 014021 113 V 113 (432)
Q Consensus 113 l 113 (432)
+
T Consensus 93 i 93 (152)
T 3rru_A 93 I 93 (152)
T ss_dssp H
T ss_pred H
Confidence 6
No 13
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=95.35 E-value=0.051 Score=48.70 Aligned_cols=78 Identities=23% Similarity=0.328 Sum_probs=66.2
Q ss_pred chHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHH
Q 014021 33 KELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEE 112 (432)
Q Consensus 33 ~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~ee 112 (432)
..++..|-|||+....-|+--.+-+|........ .....++.+|.+||. .+|..|++-+|.++.-++..+.+.|..+
T Consensus 14 ~p~~~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl~-~~n~~vql~AL~LLd~~vkNcG~~Fh~e 90 (163)
T 1x5b_A 14 NPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRVN-HKVPHVALQALTLLGACVANCGKIFHLE 90 (163)
T ss_dssp CTTHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ChHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4578999999999988899999888888876653 456789999999996 5788999999999999999988777655
Q ss_pred H
Q 014021 113 V 113 (432)
Q Consensus 113 l 113 (432)
+
T Consensus 91 v 91 (163)
T 1x5b_A 91 V 91 (163)
T ss_dssp H
T ss_pred H
Confidence 4
No 14
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=95.34 E-value=0.084 Score=46.70 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=69.0
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~e 111 (432)
...++..|-|||+....-|+--.+-+|-....... .....++++|.+||. .+|.-|++-+|.++.-++..+.+.|..
T Consensus 9 ~~~~~~~IekATs~~l~~~dw~~ileicD~I~~~~--~~pk~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~ 85 (149)
T 3g2s_A 9 PETLEARINRATNPLNKELDWASINGFCEQLNEDF--EGPPLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHD 85 (149)
T ss_dssp CCCHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSS--SHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--CcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 47799999999999998899999999888887653 456789999999996 789999999999999999999988865
Q ss_pred HH
Q 014021 112 EV 113 (432)
Q Consensus 112 el 113 (432)
++
T Consensus 86 ei 87 (149)
T 3g2s_A 86 EV 87 (149)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 15
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=95.24 E-value=0.059 Score=47.58 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 35 LDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 35 l~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
++..|-|||+....-|+--.+-+|........ .....++++|.+||. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl~-~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKIQ-SPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 67889999999988899998888888876653 346789999999995 78999999999999999999888886655
No 16
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=94.94 E-value=0.089 Score=49.47 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=67.4
Q ss_pred CchHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHH
Q 014021 32 YKELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHE 111 (432)
Q Consensus 32 ~~dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~e 111 (432)
.+.++..|.|||+.....|+--.+-+|-....... .....++.+|.+||. .+|.-|++-+|.++.-++..+.+.|..
T Consensus 6 ~~~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~--~~~k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNcG~~f~~ 82 (226)
T 3zyq_A 6 SGTFERLLDKATSQLLLETDWESILQICDLIRQGD--TQAKYAVNSIKKKVN-DKNPHVALYALEVMESVVKNCGQTVHD 82 (226)
T ss_dssp -CHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CchHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcchHHHH
Confidence 47899999999999998899999988888877643 346788999999996 689999999999999999998887765
Q ss_pred HH
Q 014021 112 EV 113 (432)
Q Consensus 112 el 113 (432)
++
T Consensus 83 ei 84 (226)
T 3zyq_A 83 EV 84 (226)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 17
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.31 E-value=0.14 Score=47.78 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=65.2
Q ss_pred hHHHHHHHhcCCCCCCccHhhHHHHHHHhccCCCCCcHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhCCcccHHHH
Q 014021 34 ELDIAIVKATNHVERPAKEKHIRAVFASISATRPRADVAYCIHALAKRLSKTHNWAVALKTLIVIHRALREVDPTFHEEV 113 (432)
Q Consensus 34 dl~vAIvKATsh~e~pPKeKHVr~Il~~T~~~rp~~~v~~~~~~L~~RL~kt~nwiValK~LillHrLLreG~p~f~eel 113 (432)
.++..|-|||++...-|+-..+-+|........ .....++.+|.+||. .+|..|++-+|.++.-++..+.+.|..++
T Consensus 5 ~~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~--~~~k~a~r~l~krl~-~~n~~~~l~aL~Lle~~vkNcG~~f~~ev 81 (220)
T 1dvp_A 5 SFCKNLENATSHLRLEPDWPSILLICDEINQKD--VTPKNAFAAIKKKMN-SPNPHSSCYSLLVLESIVKNCGAPVHEEV 81 (220)
T ss_dssp HHHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS--SCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC--cCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 388999999999988899999988888887553 356789999999996 68999999999999999999877675443
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=67.31 E-value=2.4 Score=26.01 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.2
Q ss_pred HHHHHHhhCCcc
Q 014021 97 VIHRALREVDPT 108 (432)
Q Consensus 97 llHrLLreG~p~ 108 (432)
++||||++|.|.
T Consensus 14 ILHrLLQ~~sP~ 25 (26)
T 3bej_E 14 ILHRLLQEGSPS 25 (26)
T ss_pred HHHHHHHcCCCC
Confidence 589999999873
No 19
>2prg_C Nuclear receptor coactivator SRC-1, peroxisome proliferator activated receptor gamma; complex (thiazolidinedione/receptor), ligand-binding domain; HET: BRL; 2.30A {Homo sapiens} SCOP: j.112.1.1
Probab=39.17 E-value=12 Score=29.79 Aligned_cols=12 Identities=42% Similarity=0.855 Sum_probs=10.4
Q ss_pred HHHHHHhhCCcc
Q 014021 97 VIHRALREVDPT 108 (432)
Q Consensus 97 llHrLLreG~p~ 108 (432)
++|||||+|.|.
T Consensus 67 ILHrLLQ~gSP~ 78 (88)
T 2prg_C 67 ILHRLLQEGSPS 78 (88)
T ss_dssp HHHHHHHSSCCC
T ss_pred HHHHHHhcCChH
Confidence 589999999875
No 20
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=22.66 E-value=86 Score=26.54 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=44.8
Q ss_pred HHHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccccC-----cccc-----------CCCCCChhhH
Q 014021 232 VNLVDKFFEMQ--RHDALKALDIYRRAGQQAERLSEFYEVCKSL-DIGRG-----ERFI-----------KIEQPPASFL 292 (432)
Q Consensus 232 i~LLe~fFeM~--~~da~~aleiykrf~~Q~e~L~~Fy~~ck~l-~~~r~-----~~iP-----------~L~~~P~~lL 292 (432)
-.|+++|-+.. ..+|....+ +.+|.+++.++..+|..-+.. |=.|. .+-| .|...|..=.
T Consensus 12 ~~Lv~~F~~~~i~q~eA~~~~d-~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA~~~L~~~p~~A~ 90 (123)
T 2i9c_A 12 QDLVALFAKVTVEQDDALLGNQ-ISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAAKLTLAVAPVKAR 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHHHHHHhhChHHHH
Confidence 45677777765 455665554 789999999999999998854 32332 2222 2444566666
Q ss_pred HHHHHHHHh
Q 014021 293 QAMEEYVKE 301 (432)
Q Consensus 293 ~~LEeylrd 301 (432)
..||+-.+.
T Consensus 91 ~vLe~ia~~ 99 (123)
T 2i9c_A 91 EQLEAIVSS 99 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 666666554
Done!