Query 014025
Match_columns 432
No_of_seqs 239 out of 518
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fo9_A E3 SUMO-protein ligase 100.0 4.5E-53 1.5E-57 421.4 21.3 251 162-429 14-283 (360)
2 3i2d_A E3 SUMO-protein ligase 100.0 1.1E-52 3.7E-57 419.5 19.0 241 170-429 69-317 (371)
3 2rno_A Putative DNA-binding pr 100.0 1.2E-29 4.1E-34 204.3 10.6 100 2-103 8-109 (110)
4 1v66_A Protein inhibitor of ac 99.7 2.7E-18 9.2E-23 127.9 6.9 64 1-76 1-64 (65)
5 2rsd_A E3 SUMO-protein ligase 99.4 1.9E-13 6.5E-18 105.6 3.5 67 105-172 2-68 (68)
6 1wew_A DNA-binding family prot 99.2 7.7E-12 2.6E-16 99.2 4.3 70 104-173 7-76 (78)
7 3htk_C E3 SUMO-protein ligase 98.9 5E-10 1.7E-14 107.3 5.3 78 350-429 170-249 (267)
8 2rnn_A E3 SUMO-protein ligase 98.9 1.5E-09 5E-14 90.9 7.1 67 3-72 29-95 (114)
9 3o70_A PHD finger protein 13; 98.6 1E-08 3.5E-13 79.0 2.9 52 110-169 16-67 (68)
10 3o7a_A PHD finger protein 13 v 98.6 8.1E-09 2.8E-13 75.2 1.9 49 112-168 3-51 (52)
11 2lv9_A Histone-lysine N-methyl 98.6 2.6E-08 8.9E-13 82.2 4.4 52 111-170 26-77 (98)
12 1wep_A PHF8; structural genomi 98.4 4.4E-08 1.5E-12 77.5 1.4 60 110-175 9-69 (79)
13 1wee_A PHD finger family prote 98.4 9.8E-08 3.3E-12 74.2 2.3 52 111-169 14-66 (72)
14 2do1_A Nuclear protein HCC-1; 98.4 2.8E-07 9.5E-12 67.6 4.0 38 11-48 10-47 (55)
15 3kqi_A GRC5, PHD finger protei 98.3 6.5E-08 2.2E-12 75.8 0.1 58 111-174 8-66 (75)
16 1zrj_A E1B-55KDA-associated pr 98.3 7.9E-07 2.7E-11 63.9 4.8 38 11-48 10-47 (50)
17 1h1j_S THO1 protein; SAP domai 98.2 9.4E-07 3.2E-11 63.8 4.4 39 11-49 5-43 (51)
18 1we9_A PHD finger family prote 98.2 3.2E-07 1.1E-11 69.5 2.0 54 111-170 4-59 (64)
19 1wem_A Death associated transc 98.2 3.3E-08 1.1E-12 77.7 -3.9 55 113-169 16-70 (76)
20 2kvu_A MKL/myocardin-like prot 98.2 1.1E-06 3.9E-11 68.0 4.2 40 10-49 25-64 (75)
21 1weu_A Inhibitor of growth fam 98.1 4.5E-06 1.5E-10 67.7 7.1 58 105-170 28-86 (91)
22 3c6w_A P28ING5, inhibitor of g 98.0 1.7E-06 5.8E-11 64.6 1.6 52 110-169 6-58 (59)
23 2g6q_A Inhibitor of growth pro 98.0 1.5E-06 5.2E-11 65.5 1.2 53 110-170 8-61 (62)
24 1wen_A Inhibitor of growth fam 98.0 6.5E-06 2.2E-10 63.7 4.7 53 110-170 13-66 (71)
25 2jmi_A Protein YNG1, ING1 homo 97.9 6.7E-06 2.3E-10 66.5 3.0 49 109-167 22-74 (90)
26 1x4i_A Inhibitor of growth pro 97.8 4.8E-06 1.6E-10 64.3 1.9 50 110-169 3-55 (70)
27 1jjr_A KU70, thyroid autoantig 97.8 1.1E-05 3.8E-10 71.1 4.2 39 10-48 60-98 (151)
28 2vnf_A ING 4, P29ING4, inhibit 97.8 4.8E-06 1.6E-10 62.3 1.3 52 110-169 7-59 (60)
29 2k16_A Transcription initiatio 97.7 1.2E-05 4E-10 62.7 2.0 50 112-168 17-67 (75)
30 3kv5_D JMJC domain-containing 97.7 4.9E-06 1.7E-10 86.9 -0.9 56 109-170 33-89 (488)
31 2ri7_A Nucleosome-remodeling f 97.6 5.5E-06 1.9E-10 74.8 -1.5 55 110-170 5-60 (174)
32 2kgg_A Histone demethylase jar 97.6 8.6E-06 2.9E-10 59.1 -0.5 48 114-167 4-52 (52)
33 3kv4_A PHD finger protein 8; e 97.4 9.2E-06 3.2E-10 83.8 -2.3 56 112-173 4-60 (447)
34 2yu4_A E3 SUMO-protein ligase 97.3 0.00016 5.4E-09 58.6 4.3 70 359-430 5-81 (94)
35 2kr4_A Ubiquitin conjugation f 97.2 0.00021 7.1E-09 56.9 3.9 68 357-429 10-77 (85)
36 1wgm_A Ubiquitin conjugation f 97.1 0.00075 2.6E-08 55.1 6.5 68 357-429 18-86 (98)
37 1t1h_A Gspef-atpub14, armadill 96.7 0.0011 3.9E-08 51.0 3.9 65 361-429 8-72 (78)
38 3ztg_A E3 ubiquitin-protein li 96.7 0.0017 5.7E-08 51.7 5.1 68 360-430 12-81 (92)
39 2kre_A Ubiquitin conjugation f 96.7 0.0017 5.8E-08 53.2 4.8 68 357-429 25-92 (100)
40 2bay_A PRE-mRNA splicing facto 96.7 0.00055 1.9E-08 51.0 1.7 53 360-416 2-54 (61)
41 3lqh_A Histone-lysine N-methyl 96.4 0.00018 6E-09 65.7 -2.9 58 115-175 4-68 (183)
42 2vpb_A Hpygo1, pygopus homolog 96.4 0.00013 4.5E-09 55.3 -3.6 51 115-167 11-64 (65)
43 2f42_A STIP1 homology and U-bo 96.2 0.004 1.4E-07 56.4 4.8 67 358-428 103-169 (179)
44 3lrq_A E3 ubiquitin-protein li 96.2 0.0031 1.1E-07 51.3 3.6 71 357-431 18-89 (100)
45 2ku3_A Bromodomain-containing 96.2 0.0016 5.6E-08 50.1 1.6 49 116-173 20-70 (71)
46 2y43_A E3 ubiquitin-protein li 96.2 0.0043 1.5E-07 50.1 4.3 68 358-430 19-87 (99)
47 2xb1_A Pygopus homolog 2, B-ce 96.1 0.0012 4.2E-08 54.7 0.9 52 117-170 8-62 (105)
48 2ckl_B Ubiquitin ligase protei 96.1 0.0043 1.5E-07 55.0 4.2 70 356-429 49-120 (165)
49 3pur_A Lysine-specific demethy 95.9 0.0016 5.4E-08 68.0 0.8 41 123-169 54-94 (528)
50 2l43_A N-teminal domain from h 95.9 0.0027 9.3E-08 50.9 2.0 54 114-176 26-82 (88)
51 2e6r_A Jumonji/ARID domain-con 95.8 0.0049 1.7E-07 49.8 3.1 54 109-169 12-66 (92)
52 1f62_A Transcription factor WS 95.8 0.0041 1.4E-07 44.4 2.2 45 117-168 5-49 (51)
53 1jm7_B BARD1, BRCA1-associated 95.6 0.0078 2.7E-07 50.2 3.7 65 359-430 20-85 (117)
54 2ckl_A Polycomb group ring fin 95.5 0.021 7E-07 46.8 5.9 68 357-429 11-83 (108)
55 2lri_C Autoimmune regulator; Z 95.5 0.0091 3.1E-07 45.2 3.4 46 113-168 12-58 (66)
56 3fl2_A E3 ubiquitin-protein li 95.5 0.014 4.9E-07 49.0 4.9 66 358-428 49-116 (124)
57 2jx3_A Protein DEK; alpha heli 95.5 0.013 4.4E-07 50.4 4.5 47 5-51 66-112 (131)
58 1jm7_A BRCA1, breast cancer ty 95.2 0.011 3.8E-07 48.4 3.3 67 361-430 21-92 (112)
59 2c2l_A CHIP, carboxy terminus 95.1 0.014 4.8E-07 55.3 4.1 65 359-428 206-271 (281)
60 2l5u_A Chromodomain-helicase-D 95.1 0.015 5.3E-07 43.1 3.4 48 111-168 9-57 (61)
61 3hct_A TNF receptor-associated 95.1 0.018 6.2E-07 48.0 4.2 69 356-429 13-82 (118)
62 1z6u_A NP95-like ring finger p 95.0 0.022 7.5E-07 49.9 4.8 67 358-429 75-143 (150)
63 2ecy_A TNF receptor-associated 94.9 0.02 6.8E-07 42.4 3.7 53 358-415 12-65 (66)
64 2csy_A Zinc finger protein 183 94.7 0.058 2E-06 41.6 6.0 61 360-430 14-75 (81)
65 2ecw_A Tripartite motif-contai 94.4 0.007 2.4E-07 46.8 0.0 65 358-423 16-82 (85)
66 2yt5_A Metal-response element- 94.2 0.027 9.3E-07 42.2 2.8 52 114-169 7-61 (66)
67 3asl_A E3 ubiquitin-protein li 94.1 0.025 8.6E-07 43.2 2.5 46 117-168 23-68 (70)
68 2djb_A Polycomb group ring fin 93.9 0.043 1.5E-06 41.4 3.5 53 359-416 13-66 (72)
69 2ysl_A Tripartite motif-contai 93.9 0.067 2.3E-06 40.1 4.6 56 358-416 17-73 (73)
70 1xwh_A Autoimmune regulator; P 93.7 0.04 1.4E-06 41.4 3.1 48 113-170 8-56 (66)
71 4gne_A Histone-lysine N-methyl 93.5 0.069 2.4E-06 44.2 4.3 46 112-167 14-60 (107)
72 3hcs_A TNF receptor-associated 93.4 0.061 2.1E-06 47.6 4.2 69 356-429 13-82 (170)
73 2e6s_A E3 ubiquitin-protein li 93.4 0.049 1.7E-06 42.4 3.2 46 117-168 31-76 (77)
74 2ecv_A Tripartite motif-contai 93.3 0.017 5.7E-07 44.6 0.3 63 358-421 16-80 (85)
75 3rsn_A SET1/ASH2 histone methy 93.3 0.044 1.5E-06 49.3 3.1 53 113-168 5-58 (177)
76 1rmd_A RAG1; V(D)J recombinati 93.1 0.068 2.3E-06 44.2 3.8 67 358-429 20-88 (116)
77 2ku7_A MLL1 PHD3-CYP33 RRM chi 93.1 0.0043 1.5E-07 52.5 -3.7 40 126-168 1-43 (140)
78 2yur_A Retinoblastoma-binding 92.8 0.08 2.7E-06 40.2 3.5 54 358-414 12-66 (74)
79 3l11_A E3 ubiquitin-protein li 92.6 0.07 2.4E-06 44.0 3.2 64 361-428 15-85 (115)
80 2puy_A PHD finger protein 21A; 92.5 0.064 2.2E-06 39.4 2.5 45 114-168 6-51 (60)
81 3shb_A E3 ubiquitin-protein li 92.3 0.081 2.8E-06 41.2 3.0 46 117-168 31-76 (77)
82 1mm2_A MI2-beta; PHD, zinc fin 92.1 0.083 2.8E-06 39.1 2.7 45 114-168 10-55 (61)
83 2egp_A Tripartite motif-contai 91.9 0.01 3.5E-07 45.5 -2.7 60 361-421 12-74 (79)
84 4ayc_A E3 ubiquitin-protein li 91.8 0.083 2.9E-06 45.2 2.7 61 361-427 53-116 (138)
85 2yql_A PHD finger protein 21A; 91.6 0.15 5.3E-06 36.8 3.6 44 114-167 10-54 (56)
86 3ask_A E3 ubiquitin-protein li 91.1 0.13 4.3E-06 48.2 3.3 46 117-168 179-224 (226)
87 2ysm_A Myeloid/lymphoid or mix 90.4 0.16 5.5E-06 41.9 3.1 50 115-171 56-106 (111)
88 2kwj_A Zinc finger protein DPF 90.3 0.13 4.3E-06 42.9 2.3 45 117-168 63-107 (114)
89 3knv_A TNF receptor-associated 89.5 0.068 2.3E-06 46.2 0.0 73 352-429 22-104 (141)
90 1chc_A Equine herpes virus-1 r 89.4 0.26 8.8E-06 36.3 3.2 45 362-411 6-51 (68)
91 2ect_A Ring finger protein 126 89.3 0.19 6.4E-06 38.2 2.5 52 360-416 14-68 (78)
92 2do5_A Splicing factor 3B subu 89.2 0.48 1.6E-05 33.5 4.2 32 15-46 12-43 (58)
93 1g25_A CDK-activating kinase a 89.2 0.3 1E-05 35.7 3.4 52 362-417 4-60 (65)
94 1kcf_A Hypothetical 30.2 KD pr 88.8 0.3 1E-05 46.6 4.0 34 11-44 1-34 (258)
95 2d8t_A Dactylidin, ring finger 88.3 0.13 4.4E-06 38.5 0.9 49 361-414 15-63 (71)
96 1x4j_A Ring finger protein 38; 87.9 0.28 9.5E-06 37.0 2.6 47 362-413 24-73 (75)
97 2xeu_A Ring finger protein 4; 87.8 0.29 9.8E-06 35.3 2.5 50 362-416 4-60 (64)
98 4bbq_A Lysine-specific demethy 87.6 0.21 7.2E-06 41.4 1.9 43 124-169 72-114 (117)
99 1fp0_A KAP-1 corepressor; PHD 87.2 0.61 2.1E-05 37.1 4.2 46 113-168 25-71 (88)
100 3ng2_A RNF4, snurf, ring finge 86.4 0.37 1.3E-05 35.6 2.5 50 362-416 11-67 (71)
101 2ecm_A Ring finger and CHY zin 86.2 0.61 2.1E-05 32.5 3.5 44 363-411 7-54 (55)
102 2ct2_A Tripartite motif protei 85.9 0.66 2.3E-05 35.7 3.8 52 360-414 14-70 (88)
103 3o36_A Transcription intermedi 84.9 0.62 2.1E-05 41.8 3.6 46 115-170 6-52 (184)
104 3v43_A Histone acetyltransfera 84.3 0.66 2.2E-05 38.3 3.2 45 117-168 66-111 (112)
105 1bor_A Transcription factor PM 84.3 0.43 1.5E-05 34.1 1.8 45 362-414 7-51 (56)
106 2ysj_A Tripartite motif-contai 83.8 1 3.5E-05 32.5 3.8 47 357-406 16-63 (63)
107 1wev_A Riken cDNA 1110020M19; 83.2 0.64 2.2E-05 36.8 2.6 53 114-170 17-73 (88)
108 4ap4_A E3 ubiquitin ligase RNF 83.0 0.38 1.3E-05 39.9 1.3 51 361-416 7-64 (133)
109 2ep4_A Ring finger protein 24; 83.0 0.65 2.2E-05 34.7 2.5 47 360-411 14-63 (74)
110 2ecj_A Tripartite motif-contai 82.5 1.5 5E-05 30.8 4.2 45 359-406 13-58 (58)
111 2ecg_A Baculoviral IAP repeat- 80.9 0.45 1.6E-05 36.0 0.9 45 358-411 22-67 (75)
112 1e4u_A Transcriptional repress 79.1 2.5 8.7E-05 32.4 4.7 52 362-416 12-66 (78)
113 2kiz_A E3 ubiquitin-protein li 79.0 1.1 3.9E-05 32.8 2.6 47 361-412 14-63 (69)
114 3u5n_A E3 ubiquitin-protein li 78.4 0.91 3.1E-05 41.5 2.3 46 115-170 9-55 (207)
115 2ysm_A Myeloid/lymphoid or mix 78.1 2.2 7.7E-05 34.8 4.4 47 114-167 8-55 (111)
116 1a62_A RHO; transcription term 77.4 2.2 7.6E-05 36.2 4.3 38 9-46 4-43 (130)
117 2riq_A Poly [ADP-ribose] polym 77.2 2.9 9.9E-05 36.9 5.0 47 2-48 29-76 (160)
118 2vje_B MDM4 protein; proto-onc 76.0 1.3 4.3E-05 32.5 2.0 45 363-411 9-55 (63)
119 4ic3_A E3 ubiquitin-protein li 74.1 0.89 3E-05 34.3 0.8 43 360-411 23-66 (74)
120 1v87_A Deltex protein 2; ring- 73.9 2 6.8E-05 34.8 3.0 49 363-411 27-93 (114)
121 2ea6_A Ring finger protein 4; 73.6 2 6.9E-05 31.1 2.6 47 360-411 14-67 (69)
122 1iym_A EL5; ring-H2 finger, ub 73.4 3.6 0.00012 28.4 3.9 44 363-411 7-54 (55)
123 2vje_A E3 ubiquitin-protein li 70.8 2.2 7.6E-05 31.2 2.3 45 363-411 10-56 (64)
124 4ap4_A E3 ubiquitin ligase RNF 70.7 1.7 5.7E-05 35.8 1.8 50 362-416 73-129 (133)
125 2ro1_A Transcription intermedi 70.7 2.2 7.6E-05 38.5 2.7 45 115-169 4-49 (189)
126 2ecn_A Ring finger protein 141 69.4 0.91 3.1E-05 33.5 -0.1 48 361-414 15-62 (70)
127 2ecl_A Ring-box protein 2; RNF 68.5 2.8 9.7E-05 32.0 2.6 32 379-415 47-79 (81)
128 1zbh_A 3'-5' exonuclease ERI1; 67.5 6.7 0.00023 37.6 5.6 45 4-48 19-63 (299)
129 2l0b_A E3 ubiquitin-protein li 65.2 2 6.7E-05 33.7 1.0 47 361-412 40-89 (91)
130 3v43_A Histone acetyltransfera 64.5 0.68 2.3E-05 38.3 -1.9 40 124-167 23-62 (112)
131 1y02_A CARP2, FYVE-ring finger 63.8 11 0.00038 31.4 5.5 38 8-45 73-112 (120)
132 2j9u_B VPS36, vacuolar protein 63.0 2.2 7.4E-05 32.8 0.8 10 398-407 15-24 (76)
133 2yho_A E3 ubiquitin-protein li 62.1 2.2 7.5E-05 32.7 0.8 41 362-411 19-60 (79)
134 6rxn_A Rubredoxin; electron tr 58.9 2.7 9.2E-05 29.2 0.7 12 398-409 28-39 (46)
135 2ea5_A Cell growth regulator w 58.5 5.7 0.0002 29.4 2.5 41 362-411 16-57 (68)
136 2out_A MU-like prophage flumu 56.3 6.2 0.00021 33.4 2.6 31 11-41 89-121 (131)
137 3t6p_A Baculoviral IAP repeat- 53.6 3.4 0.00011 40.9 0.6 44 359-411 293-337 (345)
138 4rxn_A Rubredoxin; electron tr 49.8 4.6 0.00016 29.0 0.7 12 398-409 34-45 (54)
139 1e8j_A Rubredoxin; iron-sulfur 49.4 5.4 0.00019 28.4 1.0 12 398-409 34-45 (52)
140 2v3b_B Rubredoxin 2, rubredoxi 48.9 5.4 0.00018 28.7 0.9 12 398-409 34-45 (55)
141 2yrc_A Protein transport prote 48.6 2 6.8E-05 31.5 -1.5 13 396-408 29-41 (59)
142 1yk4_A Rubredoxin, RD; electro 48.0 5.1 0.00018 28.5 0.7 13 397-409 32-44 (52)
143 2k5c_A Uncharacterized protein 46.6 2.2 7.7E-05 33.2 -1.5 16 401-416 9-24 (95)
144 2y1n_A E3 ubiquitin-protein li 45.5 9.1 0.00031 38.4 2.3 49 361-414 332-381 (389)
145 2jvx_A NF-kappa-B essential mo 45.4 6.6 0.00023 24.3 0.8 14 398-411 1-14 (28)
146 1wim_A KIAA0161 protein; ring 45.4 8.6 0.00029 30.0 1.7 53 362-414 6-68 (94)
147 2kn9_A Rubredoxin; metalloprot 45.0 6.6 0.00022 30.6 0.9 12 398-409 58-69 (81)
148 1dx8_A Rubredoxin; electron tr 44.1 6.4 0.00022 29.8 0.7 12 398-409 38-49 (70)
149 2w51_A Protein arMet; MANF, CD 43.9 2.6 8.8E-05 36.8 -1.7 38 11-48 108-147 (158)
150 3vk6_A E3 ubiquitin-protein li 43.1 13 0.00044 30.1 2.4 45 363-410 3-47 (101)
151 1s24_A Rubredoxin 2; electron 39.5 9.2 0.00032 30.2 1.0 13 397-409 65-77 (87)
152 2e61_A Zinc finger CW-type PWW 33.4 48 0.0016 24.8 4.1 42 124-176 15-56 (69)
153 2kwj_A Zinc finger protein DPF 29.9 12 0.00041 30.7 0.2 40 124-167 20-59 (114)
154 1wi9_A Protein C20ORF116 homol 29.4 31 0.0011 26.2 2.4 43 3-49 8-50 (72)
155 2m0e_A Zinc finger and BTB dom 29.4 27 0.00092 19.1 1.7 13 400-412 2-14 (29)
156 3l0o_A Transcription terminati 29.0 52 0.0018 33.3 4.7 39 9-47 11-51 (427)
157 3dpl_R Ring-box protein 1; ubi 28.9 32 0.0011 27.7 2.7 32 376-412 69-101 (106)
158 1jvr_A HTLV-II MA, MA, human T 28.8 21 0.00071 29.6 1.5 20 387-406 46-65 (137)
159 1eh2_A EPS15; calcium binding, 28.3 1.4E+02 0.0048 23.5 6.5 55 14-80 31-85 (106)
160 3mjh_B Early endosome antigen 28.1 7.3 0.00025 25.3 -1.1 13 400-412 5-17 (34)
161 1p7a_A BF3, BKLF, kruppel-like 26.4 25 0.00086 21.0 1.3 13 399-411 10-22 (37)
162 3vhs_A ATPase wrnip1; zinc fin 26.4 22 0.00074 21.5 0.8 13 400-412 6-18 (29)
163 2kvh_A Zinc finger and BTB dom 26.2 25 0.00086 19.3 1.2 13 399-411 2-14 (27)
164 1klr_A Zinc finger Y-chromosom 25.9 28 0.00097 19.2 1.4 13 400-412 2-14 (30)
165 1ard_A Yeast transcription fac 25.9 26 0.00087 19.4 1.2 12 400-411 2-13 (29)
166 1kdl_A YOPD protein; yersinia, 25.5 26 0.00087 21.1 1.0 15 418-432 1-15 (26)
167 1lv3_A Hypothetical protein YA 24.8 21 0.0007 26.9 0.7 17 396-412 5-21 (68)
168 1sfu_A 34L protein; protein/Z- 24.7 16 0.00056 27.9 0.1 29 2-30 12-43 (75)
169 2elr_A Zinc finger protein 406 24.1 27 0.00093 20.6 1.1 13 399-411 8-20 (36)
170 2d8s_A Cellular modulator of i 23.8 51 0.0017 25.1 2.8 39 371-414 31-72 (80)
171 1znf_A 31ST zinc finger from X 22.9 30 0.001 18.8 1.1 11 401-411 2-12 (27)
172 1zbu_A ERI-1 homolog, 3'-5' ex 22.9 18 0.00061 35.6 0.0 45 4-48 69-113 (349)
173 2xb1_A Pygopus homolog 2, B-ce 22.7 36 0.0012 27.4 1.8 16 399-414 2-17 (105)
174 2lbm_A Transcriptional regulat 22.6 28 0.00095 29.9 1.2 49 382-430 86-138 (142)
175 1yuz_A Nigerythrin; rubrythrin 22.5 23 0.00078 32.1 0.7 12 399-410 185-196 (202)
176 2lvu_A Zinc finger and BTB dom 27.6 19 0.00065 19.7 0.0 13 400-412 2-14 (26)
177 1nj3_A NPL4; NZF domain, rubre 21.8 32 0.0011 21.3 1.0 11 398-408 4-14 (31)
178 2kvf_A Zinc finger and BTB dom 21.6 36 0.0012 18.7 1.2 12 400-411 3-14 (28)
179 2m0f_A Zinc finger and BTB dom 20.7 36 0.0012 18.6 1.1 12 400-411 2-13 (29)
180 2elx_A Zinc finger protein 406 20.1 39 0.0013 19.7 1.2 13 399-411 6-18 (35)
No 1
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=100.00 E-value=4.5e-53 Score=421.37 Aligned_cols=251 Identities=20% Similarity=0.392 Sum_probs=200.3
Q ss_pred cccceeecccCcchhhccccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhccC---------CeeEEE---EEe
Q 014025 162 YCEICRLSRADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSKQ---------EYDVQA---WCM 229 (432)
Q Consensus 162 ~C~~Crl~~~dPF~~~i~~ll~p~~l~~~~i~~~g~~~~q~~~~~F~Lt~~~~~~l~~~---------~~~l~v---~C~ 229 (432)
+.|..+| +.+|||+++++|++|+.|.++ ++..+|...+.|.||++|...+... +|++|| +|.
T Consensus 14 ~~~~~~~-k~lPFy~v~~~l~~Pt~L~~~-----~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~ 87 (360)
T 4fo9_A 14 LYFQGQL-KNLPFYDVLDVLIKPTSLVQS-----SIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCL 87 (360)
T ss_dssp ---CCCB-CCCTTEEEEEEEEEEEECCCC-----SSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEE
T ss_pred cCCCcee-cCCCchHhHhhhcCceecccc-----cCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEE
Confidence 4566788 558999999999999999764 3566888999999999999888632 355555 475
Q ss_pred ecCCCCccccCCCceeeEEECCeeeeccCCCCCCCCCCC-CCCCCCC-cccCcCCc---ccEEEEEEe-c-cceEEEEEE
Q 014025 230 LLNDKVPFRMQWPQYADLQVNGVPVRAINRPGSQLLGAN-GRDDGPI-ITPWTKDG---INKIVLTGC-D-ARIFCLGVR 302 (432)
Q Consensus 230 ~~~~~~~~~~~wP~~~~i~vNg~~v~~~~r~~~~~~g~~-~r~~~~~-IT~~l~~g---~N~I~i~~~-d-~~~y~~~v~ 302 (432)
. ++++++++.||.+++|+|||+.++.++.-+.++.|.. +|...|+ ||++++.| .|+|+|+|+ + ++.|+++||
T Consensus 88 ~-~~~~~q~~~fP~~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~ 166 (360)
T 4fo9_A 88 A-ETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVY 166 (360)
T ss_dssp C--C-CCBCCBCCTTCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEE
T ss_pred c-cCCCcccccCCCceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEE
Confidence 4 5677899999999999999999997542223344433 4444444 99999987 599999997 3 689999999
Q ss_pred EEEecCHHHHHhhcccCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCCcceEeeceeeeecCCCccccccccccccCcCc
Q 014025 303 IVKRRSVQQVLNLIPKESEGEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVH 382 (432)
Q Consensus 303 lVk~~s~~~ll~~I~~~~~~~~~e~~~~~ik~~l~~~~~~~~~d~D~D~ev~~~~~~isL~CPls~~ri~~P~Rg~~C~H 382 (432)
+|+++|+++|+++|+++ +..+.+++++.|+++++. |+|+||+++++.|||+||||++||++||||..|.|
T Consensus 167 lV~~~s~~~Llq~l~~k-~~~~~e~t~~~Ik~~l~~---------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~H 236 (360)
T 4fo9_A 167 LVRQLTSAMLLQRLKMK-GIRNPDHSRALIKEKLTA---------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTH 236 (360)
T ss_dssp EEEECCHHHHHHHHHTC--CBCHHHHHHHHHHHHC------------------CCEEEESBCTTTCSBCSSEEEETTCCC
T ss_pred EEEeCCHHHHHHHHHhc-CCCCHHHHHHHHHHHhcc---------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCC
Confidence 99999999999999874 357789999999998842 23446888999999999999999999999999999
Q ss_pred cccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 383 MGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 383 lQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
+|||||++||+||++.++|+||||++.+++++|+||+||++||+.+.
T Consensus 237 lqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~~~ 283 (360)
T 4fo9_A 237 LQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILNDCS 283 (360)
T ss_dssp CCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTTCS
T ss_pred CccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998753
No 2
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-52 Score=419.52 Aligned_cols=241 Identities=22% Similarity=0.347 Sum_probs=201.7
Q ss_pred ccCcchhhccccccceeeeecccCCCCCCCceeeeEEEEeChhhHHhhcc--CCeeEEEEEeecCCC---CccccCCCce
Q 014025 170 RADPFWVTIGHPLYPLKLTTTNIPTDGTNPARILEKTFPITRADKDLLSK--QEYDVQAWCMLLNDK---VPFRMQWPQY 244 (432)
Q Consensus 170 ~~dPF~~~i~~ll~p~~l~~~~i~~~g~~~~q~~~~~F~Lt~~~~~~l~~--~~~~l~v~C~~~~~~---~~~~~~wP~~ 244 (432)
+.+|||+. ..++..+..... .. .....+.+.|.|+++++++|++ ++|+|+|||+..++. ...+++||..
T Consensus 69 k~SPFY~i-~~~i~~~~~~~~--~~---~~R~~~~~~F~Ls~~~~~~L~~~~~~~rl~L~C~~~~~~~~~~~~~i~fP~~ 142 (371)
T 3i2d_A 69 KESPFYKI-QRLIPELVMNVE--VT---GGRGMCSAKFKLSKADYNLLSNPNSKHRLYLFSGMINPLGSRGNEPIQFPFP 142 (371)
T ss_dssp CCBTTEEE-EEEEEEEEEEEC--CE---EEEEEEEEEECCCHHHHHHHHSTTCCEEEEEEEEESSCSSCGGGBCCCCCSS
T ss_pred cCCCCcee-eeecCCcccccc--cc---CCCCEEEEEEEECHHHHHHHhcCCCCceEEEEeeecCCCCCCCCcCeecCCc
Confidence 78999995 455544422111 11 1233678999999999999983 689999999998652 3568999999
Q ss_pred eeEEECCeeeeccCCCCCCCCCCCCCCCCCCcccCcCCc--ccEEEEEEe-ccceEEEEEEEEEecCHHHHHhhcccCCC
Q 014025 245 ADLQVNGVPVRAINRPGSQLLGANGRDDGPIITPWTKDG--INKIVLTGC-DARIFCLGVRIVKRRSVQQVLNLIPKESE 321 (432)
Q Consensus 245 ~~i~vNg~~v~~~~r~~~~~~g~~~r~~~~~IT~~l~~g--~N~I~i~~~-d~~~y~~~v~lVk~~s~~~ll~~I~~~~~ 321 (432)
++|+|||..|+.+.|+. ++++|++.|++||++++.+ .|+|+|+|. +++.|+++|++|+++++++|++.|++++
T Consensus 143 ~eI~VNg~~vk~n~rGl---Knk~Gt~~PvDIT~~lr~~~~~N~I~i~y~~~~~~Y~i~v~lVk~~s~e~Ll~~I~~~~- 218 (371)
T 3i2d_A 143 NELRCNNVQIKDNIRGF---KSKPGTAKPADLTPHLKPYTQQNNVELIYAFTTKEYKLFGYIVEMITPEQLLEKVLQHP- 218 (371)
T ss_dssp EEEEETTEECCSCCSSC---TTSCGGGSCEECGGGCCCSSSCEEEEEEEEEESSCEEEEEEEEEECCHHHHHHHHHTSC-
T ss_pred eEEEECCEEeccccccC---CCCCCCcCCCCchhhhccCCCCcEEEEEEecccceEEEEEEEEEecCHHHHHHHHHhcC-
Confidence 99999999999887874 4567888888899999985 899999996 5789999999999999999999998765
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCCCCcceEeeceeeeecCCCccccccccccccCcCccccccHHHHHHHhcCCCce
Q 014025 322 GEHFEDALTRVCRCVGGGNAADNADSDSDLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKW 401 (432)
Q Consensus 322 ~~~~e~~~~~ik~~l~~~~~~~~~d~D~D~ev~~~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W 401 (432)
.++.+++++.|+++++. |+ |+||+++++.|||+||||++||++||||..|.|+|||||++||+|+++.++|
T Consensus 219 ~i~~e~tl~~Ik~~ls~-------d~--DdDIv~~s~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W 289 (371)
T 3i2d_A 219 KIIKQATLLYLKKTLRE-------DE--EMGLTTTSTIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTW 289 (371)
T ss_dssp CBCHHHHHHHHHHHHHS-------CC--------CEEEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHhcc-------CC--CCceeeeeeEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCce
Confidence 47788999999998841 22 3458889999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 402 QCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 402 ~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
+||||++.+.+++|+||+||++||+.+.
T Consensus 290 ~CPIC~k~~~~~dL~ID~~~~~IL~~~~ 317 (371)
T 3i2d_A 290 QCPVCQIDIALENLAISEFVDDILQNCQ 317 (371)
T ss_dssp BCTTTCCBCCGGGEEEBHHHHHHHTTSC
T ss_pred eCCCCCcccCHHHeeEcHHHHHHHHhcc
Confidence 9999999999999999999999998763
No 3
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=99.96 E-value=1.2e-29 Score=204.27 Aligned_cols=100 Identities=58% Similarity=0.886 Sum_probs=94.1
Q ss_pred ccHHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccccccc--ccCCCCCcHHHHHHHHHHHHHhcccC
Q 014025 2 DSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKM--WAKKSPVSKEEVAKLVDDTHRKLQVS 79 (432)
Q Consensus 2 ~~~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~~~~~--~~~~~~~~~~~~~~~i~~~y~~~~~~ 79 (432)
|++++||.+|.+|||+||||||.+|||||+|+||+|+|||+++|++++.+.. |+.++++++|+|+++|||+||+|+++
T Consensus 8 dl~~~Ck~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~~~~~~~K~~v~kE~vaKIVDDtYRKMqvS 87 (110)
T 2rno_A 8 DLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRKNSLTKEAVAKIVDDTYRKMQIQ 87 (110)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTTSCCCSTTGGGSHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcccccccccccccHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999999999999999998874 89999999999999999999999999
Q ss_pred CCCCcccCCCCCcCCCCccccccc
Q 014025 80 VAPDLASKGGQGVSNSSNIKIKGE 103 (432)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ 103 (432)
+++++|+++ |+.++++ ++++++
T Consensus 88 gAtDLASk~-q~~sd~s-~k~k~E 109 (110)
T 2rno_A 88 CAPDLATRS-HSGSDFS-FRPIEE 109 (110)
T ss_dssp TCCCSCTTC-SSCSSSC-SCCCTT
T ss_pred CCccccccC-ccccCcc-cccCCC
Confidence 999999998 9888887 777764
No 4
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=99.74 E-value=2.7e-18 Score=127.90 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=60.2
Q ss_pred CccHHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHHHhc
Q 014025 1 MDSVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKL 76 (432)
Q Consensus 1 ~~~~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~ 76 (432)
|+.+.++++|+.+|||+|||.+|+++|++|+|||+||+.|++.+|+...++ +|...|.|+|+++
T Consensus 1 ~~~~~el~~Mv~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s~------------~v~~KIrELy~~r 64 (65)
T 1v66_A 1 MADSAELKQMVMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCSP------------AVQMKIKELYRRR 64 (65)
T ss_dssp CCCTTHHHHHHTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCCH------------HHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCCH------------HHHHHHHHHHHhc
Confidence 778899999999999999999999999999999999999999999999866 7878899999876
No 5
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.37 E-value=1.9e-13 Score=105.62 Aligned_cols=67 Identities=58% Similarity=1.222 Sum_probs=56.7
Q ss_pred cccCCCCCccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccC
Q 014025 105 DDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRAD 172 (432)
Q Consensus 105 ~~~~q~~~~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~d 172 (432)
+++.+++..++|+||.....+.||+|++.+|..|||..||++..++.+. ..+|.+|||+.||+.++|
T Consensus 2 ~d~~~~e~~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~-~~~p~~~~C~~Cr~~r~D 68 (68)
T 2rsd_A 2 SDSFQPEAKVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGES-AEVPPVFYCELCRLSRAD 68 (68)
T ss_dssp CSCCCSSCEECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSC-CCCCSSCCCHHHHHHHTC
T ss_pred CCCcCCCCCEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccc-cCCCCcEECcCccCcccC
Confidence 3566778889999999888899999997779999999999998766444 356789999999998875
No 6
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.20 E-value=7.7e-12 Score=99.16 Aligned_cols=70 Identities=63% Similarity=1.307 Sum_probs=58.3
Q ss_pred ccccCCCCCccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCc
Q 014025 104 MDDYIQSDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (432)
Q Consensus 104 ~~~~~q~~~~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dP 173 (432)
.++...++..++|+|+.....+.||+|+++.|..|||..||++..+++++.+..+..|+|+.|+..+.+|
T Consensus 7 ~dd~~~~~~~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 7 GEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp CCCSSSCCCCCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred cccccCCCCCEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 4566677788999999997788999999666999999999999877655445678899999999877654
No 7
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.94 E-value=5e-10 Score=107.28 Aligned_cols=78 Identities=19% Similarity=0.357 Sum_probs=69.9
Q ss_pred CcceEeeceeeeecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCC--CCCCCCCCCeeecHHHHHHHHH
Q 014025 350 DLEVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPI--CLRNYSLENIIIDPYFNRITSK 427 (432)
Q Consensus 350 D~ev~~~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPi--C~k~~~~~~L~ID~y~~~Il~~ 427 (432)
|+||++++..++|+|||++..|+-||++..|.|. ||-..+.++-+..+.|.||+ |++.+..++|+.|..+.++++.
T Consensus 170 DDDI~v~~~~~el~CPIcl~~f~DPVts~~CGHs--FcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~ 247 (267)
T 3htk_C 170 EDDLQIEGGKIELTCPITCKPYEAPLISRKCNHV--FDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKI 247 (267)
T ss_dssp SSCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCE--EEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHH
T ss_pred CccceecCCceeeECcCccCcccCCeeeCCCCCc--ccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHH
Confidence 3467778899999999999999999999999995 99999998877778899999 9999999999999999888776
Q ss_pred hh
Q 014025 428 VL 429 (432)
Q Consensus 428 ~~ 429 (432)
.+
T Consensus 248 ~k 249 (267)
T 3htk_C 248 AK 249 (267)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.5e-09 Score=90.93 Aligned_cols=67 Identities=22% Similarity=0.338 Sum_probs=57.5
Q ss_pred cHHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHH
Q 014025 3 SVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDT 72 (432)
Q Consensus 3 ~~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 72 (432)
.++++...|..|.|.|||++|++.||+.+|+|+||++||.++|+... ..|+.++++..+|..+|...
T Consensus 29 e~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~---~~g~~D~~rl~ai~~lI~~~ 95 (114)
T 2rnn_A 29 EVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL---VVGKSDPYRVQAVKFLIERI 95 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT---CTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc---ccCCCCHHHHHHHHHHHHHH
Confidence 35678888999999999999999999999999999999999999875 33578888888887766543
No 9
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=98.65 E-value=1e-08 Score=78.95 Aligned_cols=52 Identities=38% Similarity=0.864 Sum_probs=43.9
Q ss_pred CCCccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 110 SDTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
+...++|+|+....++.||+|+. |..|+|..|+++...+ .+..|+|+.|+-.
T Consensus 16 ~~~~~~CiC~~~~~~~~MIqCd~--C~~WfH~~Cvgi~~~~------~~~~~~C~~C~~s 67 (68)
T 3o70_A 16 FQGLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRDS 67 (68)
T ss_dssp TTTCCCSTTCCCCTTCCEEECTT--TCCEEETTTTTCCTTS------CCSSCCCHHHHTC
T ss_pred CCCceEeECCCcCCCCCEEECCC--CCccccccccCcCccc------CCCcEECCCCCCC
Confidence 45678999999877778999999 9999999999997542 4679999999753
No 10
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=98.63 E-value=8.1e-09 Score=75.24 Aligned_cols=49 Identities=39% Similarity=0.922 Sum_probs=41.6
Q ss_pred CccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 112 TKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 112 ~~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
..++|+|+....++.||+|+. |+.|+|..|++++..+ .+..|+|+.|+-
T Consensus 3 d~~~C~C~~~~~~~~MI~Cd~--C~~W~H~~Cvgi~~~~------~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFAGRPMIECNE--CHTWIHLSCAKIRKSN------VPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCTTCCEEECTT--TCCEEETTTTTCCGGG------CCSSCCCHHHHT
T ss_pred cCeEEEeCCcCCCCCEEEcCC--CCccccccccCCCccc------CCCcEECcCCCC
Confidence 357999999877789999999 9999999999997542 467999999963
No 11
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.60 E-value=2.6e-08 Score=82.15 Aligned_cols=52 Identities=33% Similarity=0.863 Sum_probs=44.5
Q ss_pred CCccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 111 DTKVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 111 ~~~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
+..+||+|+.....+.||+|+. |..|+|..|++++.. .+|..|+|+.|+...
T Consensus 26 ~d~vrCiC~~~~~~~~mi~Cd~--C~~w~H~~C~~~~~~------~~p~~w~C~~C~~~~ 77 (98)
T 2lv9_A 26 TDVTRCICGFTHDDGYMICCDK--CSVWQHIDCMGIDRQ------HIPDTYLCERCQPRN 77 (98)
T ss_dssp CCBCCCTTSCCSCSSCEEEBTT--TCBEEETTTTTCCTT------SCCSSBCCTTTSSSC
T ss_pred CCCEEeECCCccCCCcEEEcCC--CCCcCcCcCCCCCcc------CCCCCEECCCCcCCC
Confidence 4569999999988899999999 999999999998643 246789999998754
No 12
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.43 E-value=4.4e-08 Score=77.55 Aligned_cols=60 Identities=27% Similarity=0.517 Sum_probs=46.7
Q ss_pred CCCccccCCCCCCC-CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCcch
Q 014025 110 SDTKVCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFW 175 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~-~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dPF~ 175 (432)
....++|+|+.... .+.||+|+. |..|+|..|+++...+.+ .+..|+|+.|+..+..++.
T Consensus 9 ~~~~~~C~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~~----~~~~~~C~~C~~~~~~~~~ 69 (79)
T 1wep_A 9 ALVPVYCLCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENAV----DIDIYHCPDCEAVFGPSIM 69 (79)
T ss_dssp CCCCCCSTTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHHT----TCSBBCCTTTTTTSCSCBC
T ss_pred cCCccEEEcCCccCCCCceEEcCC--CCCcEEeeecCccccccc----CCCeEECCCcccccCCCce
Confidence 34568999999763 789999999 999999999999754321 2568999999986644443
No 13
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.38 E-value=9.8e-08 Score=74.18 Aligned_cols=52 Identities=35% Similarity=0.806 Sum_probs=42.4
Q ss_pred CCccccCCCCCCC-CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 111 DTKVCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 111 ~~~~rC~Cg~~~~-~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
...++|+|+.... +..||+|+. |..|||..||++...+ ..+..|+|+.|+..
T Consensus 14 ~~~~~C~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~-----~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDCKCGTKDDDGERMLACDG--CGVWHHTRCIGINNAD-----ALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECCTTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTS-----CCCSCCCCHHHHHH
T ss_pred CcceEeeCCCccCCCCcEEECCC--CCCccCCeeeccCccc-----cCCCcEECCCccCC
Confidence 3568999998854 457999999 9999999999997432 24679999999874
No 14
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.36 E-value=2.8e-07 Score=67.64 Aligned_cols=38 Identities=37% Similarity=0.574 Sum_probs=36.0
Q ss_pred HhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 014025 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (432)
Q Consensus 11 l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~ 48 (432)
+..++|.|||+.|++.||+.+|+|+||++||.+++...
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999998875
No 15
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=98.33 E-value=6.5e-08 Score=75.81 Aligned_cols=58 Identities=28% Similarity=0.638 Sum_probs=44.8
Q ss_pred CCccccCCCCCCC-CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCcc
Q 014025 111 DTKVCCPCGSSLE-TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPF 174 (432)
Q Consensus 111 ~~~~rC~Cg~~~~-~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dPF 174 (432)
...++|+|+.... ++.||+|+. |..|+|..|+++...+.+ ....|+|+.|+....-++
T Consensus 8 ~~~~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~~----~~~~~~C~~C~~~~~~~~ 66 (75)
T 3kqi_A 8 TVPVYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEAP----DIDIYHCPNCEKTHGKST 66 (75)
T ss_dssp CCCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTGG----GBSSCCCHHHHHHHCCCC
T ss_pred CCeeEEECCCcCCCCCCEEEcCC--CCCCEecccccccccccC----CCCEEECCCCcccCCCCe
Confidence 3468999998753 679999999 999999999999865421 246899999987543333
No 16
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.28 E-value=7.9e-07 Score=63.93 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=35.7
Q ss_pred HhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 014025 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (432)
Q Consensus 11 l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~ 48 (432)
+..++|.|||+.|++-||+.+|+|+||++|+.+++...
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999998765
No 17
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=98.24 E-value=9.4e-07 Score=63.84 Aligned_cols=39 Identities=31% Similarity=0.476 Sum_probs=36.3
Q ss_pred HhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccc
Q 014025 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (432)
Q Consensus 11 l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~ 49 (432)
+..++|.|||+.|++-||+.+|+|+||++|+.+....+.
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999987764
No 18
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.23 E-value=3.2e-07 Score=69.50 Aligned_cols=54 Identities=30% Similarity=0.624 Sum_probs=43.0
Q ss_pred CCcccc-CCCCCC-CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 111 DTKVCC-PCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 111 ~~~~rC-~Cg~~~-~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
+...+| +|+... ..+.||+|+. |..|+|..|+++...+.+ .+..|+|+.|+.++
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~~----~~~~~~C~~C~~k~ 59 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARAE----HIKQYKCPSCSNKS 59 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGGG----GCSSCCCHHHHTTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHhc----CCCcEECCCCcCcC
Confidence 455789 999875 3688999998 999999999999755422 24689999998744
No 19
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.22 E-value=3.3e-08 Score=77.67 Aligned_cols=55 Identities=27% Similarity=0.541 Sum_probs=42.4
Q ss_pred ccccCCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 113 KVCCPCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 113 ~~rC~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
.++|+|+.....+.||+|+. |..|+|..||++...+.+.+...+..|+|+.|+..
T Consensus 16 ~~~C~C~~~~~~~~MI~Cd~--C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICCDR--CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCSTTCCCCCSSCEEECSS--SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEEECCCccCCCCEEEeCC--CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 58999999877789999998 99999999999974321110012568999999863
No 20
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=98.19 E-value=1.1e-06 Score=68.02 Aligned_cols=40 Identities=28% Similarity=0.425 Sum_probs=37.0
Q ss_pred HHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccc
Q 014025 10 KLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (432)
Q Consensus 10 ~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~ 49 (432)
.+..+.|.|||+.|++-||+.+|+|+||++|+.++++...
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence 4678999999999999999999999999999999998764
No 21
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.15 E-value=4.5e-06 Score=67.67 Aligned_cols=58 Identities=28% Similarity=0.721 Sum_probs=44.8
Q ss_pred cccCCCCCccccCCCCCCCCCCeeeecCCCCC-CcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 105 DDYIQSDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 105 ~~~~q~~~~~rC~Cg~~~~~~~~i~C~~~~C~-~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
.....++...+|+|+.... +.||.|+...|. .|+|..||++...| ...||||.|+..+
T Consensus 28 ~~~~d~~e~~yCiC~~~~~-g~MI~CD~~dC~~~WfH~~CVgl~~~p-------~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 28 DMPVDPNEPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 86 (91)
T ss_dssp SCCCCSCCCBCSTTCCBCC-SCCCCCSCSSCSCCCCCSTTTTCSSCC-------CSSCCCTTTCCCC
T ss_pred cCCcCCCCCcEEECCCCCC-CCEeEecCCCCCCCCEecccCCcCcCC-------CCCEECcCccCcC
Confidence 3344556779999998754 689999995555 79999999987553 3589999998743
No 22
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.99 E-value=1.7e-06 Score=64.55 Aligned_cols=52 Identities=33% Similarity=0.846 Sum_probs=40.3
Q ss_pred CCCccccCCCCCCCCCCeeeecCCCCC-CcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 110 SDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~~~~~i~C~~~~C~-~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
++...+|+|+... .+.||.|+...|. .|+|..|+++...| ...|+||.|+-+
T Consensus 6 ~~e~~yC~C~~~~-~g~mi~CD~~~C~~~wfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 6 SNEPTYCLCHQVS-YGEMIGCDNPDCPIEWFHFACVDLTTKP-------KGKWFCPRCVQE 58 (59)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHCC
T ss_pred CCCCcEEECCCCC-CCCeeEeeCCCCCCCCEecccCCcccCC-------CCCEECcCccCc
Confidence 3456899999865 4789999996666 69999999987553 257999999753
No 23
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.98 E-value=1.5e-06 Score=65.48 Aligned_cols=53 Identities=34% Similarity=0.841 Sum_probs=40.3
Q ss_pred CCCccccCCCCCCCCCCeeeecCCCCC-CcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 110 SDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~~~~~i~C~~~~C~-~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
++...+|+|+... .+.||.|+...|. .|+|..||++...| ...|+||.|+-.+
T Consensus 8 ~~e~~yC~C~~~~-~g~MI~CD~c~C~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQVS-YGEMIGCDNEQCPIEWFHFSCVSLTYKP-------KGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEEC-CSEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHTCC
T ss_pred CCCCcEEECCCCC-CCCeeeeeCCCCCcccEecccCCcCcCC-------CCCEECcCcccCC
Confidence 4466899999864 4689999994444 99999999997543 3589999997644
No 24
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.97 E-value=6.5e-06 Score=63.68 Aligned_cols=53 Identities=28% Similarity=0.773 Sum_probs=41.8
Q ss_pred CCCccccCCCCCCCCCCeeeecCCCCC-CcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 110 SDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~~~~~i~C~~~~C~-~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
+....+|+|+.... +.||.|+...|. .|+|..||++...| ...||||.|+..+
T Consensus 13 ~~~~~~C~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvgl~~~p-------~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 13 PNEPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQES 66 (71)
T ss_dssp TTSCCCSTTCCCSC-SSEECCSCSSCSCCCEETTTTTCSSCC-------SSCCCCTTTSSCS
T ss_pred CCCCCEEECCCCCC-CCEeEeeCCCCCCccEecccCCcCcCC-------CCCEECCCCCccc
Confidence 44568999998754 689999996666 79999999987543 3589999997643
No 25
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.85 E-value=6.7e-06 Score=66.48 Aligned_cols=49 Identities=27% Similarity=0.742 Sum_probs=38.6
Q ss_pred CCCCccccCCCCCCCCCCeeeecCCCCC---CcccccceecCCCCCCCCCCCCCcccccc-ee
Q 014025 109 QSDTKVCCPCGSSLETESMIKCEDPRCP---VWQHMSCVIIPEKPTEGNPPVPELFYCEI-CR 167 (432)
Q Consensus 109 q~~~~~rC~Cg~~~~~~~~i~C~~~~C~---~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~-Cr 167 (432)
.++...+|+|+.... +.||.|+. |+ .|+|..||++...| ...||||. |+
T Consensus 22 ~~~~~~yCiC~~~~~-g~MI~CD~--c~C~~eWfH~~CVgl~~~p-------~~~W~Cp~cC~ 74 (90)
T 2jmi_A 22 NNQEEVYCFCRNVSY-GPMVACDN--PACPFEWFHYGCVGLKQAP-------KGKWYCSKDCK 74 (90)
T ss_dssp --CCSCCSTTTCCCS-SSEECCCS--SSCSCSCEETTTSSCSSCT-------TSCCCSSHHHH
T ss_pred CCCCCcEEEeCCCCC-CCEEEecC--CCCccccCcCccCCCCcCC-------CCCccCChhhc
Confidence 345678999998654 57999999 66 89999999997543 25899999 96
No 26
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.84 E-value=4.8e-06 Score=64.27 Aligned_cols=50 Identities=28% Similarity=0.689 Sum_probs=40.2
Q ss_pred CCCccccCCCCCCCCCCeeeecCCCCC---CcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 110 SDTKVCCPCGSSLETESMIKCEDPRCP---VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~~~~~i~C~~~~C~---~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
++...+|+|+... .+.||.|+. |+ .|+|..||++...| ...||||.|+..
T Consensus 3 ~~~~~yC~C~~~~-~g~MI~CD~--cdC~~~WfH~~Cvgl~~~p-------~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYCICNQVS-YGEMVGCDN--QDCPIEWFHYGCVGLTEAP-------KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCSTTSCCC-CSSEECCSC--TTCSCCCEEHHHHTCSSCC-------SSCCCCHHHHHH
T ss_pred CCCCeEEEcCCCC-CCCEeEeCC--CCCCccCCcccccccCcCC-------CCCEECCCCCcc
Confidence 3466899999874 469999999 74 89999999997543 458999999763
No 27
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.83 E-value=1.1e-05 Score=71.09 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=35.9
Q ss_pred HHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 014025 10 KLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (432)
Q Consensus 10 ~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~ 48 (432)
.|.+|.|.|||+.|++-||+.+|+|+||++||.++|+..
T Consensus 60 ~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 60 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp CTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred cHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999998765
No 28
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.80 E-value=4.8e-06 Score=62.29 Aligned_cols=52 Identities=29% Similarity=0.789 Sum_probs=39.2
Q ss_pred CCCccccCCCCCCCCCCeeeecCCCCC-CcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 110 SDTKVCCPCGSSLETESMIKCEDPRCP-VWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 110 ~~~~~rC~Cg~~~~~~~~i~C~~~~C~-~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
++...+|+|+.... +.||.|+...|. .|+|..|++++..| ...|+||.|+-+
T Consensus 7 ~~e~~~C~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvgl~~~p-------~g~w~C~~C~~~ 59 (60)
T 2vnf_A 7 PNEPTYCLCHQVSY-GEMIGCDNPDCSIEWFHFACVGLTTKP-------RGKWFCPRCSQE 59 (60)
T ss_dssp --CCEETTTTEECC-SEEEECSCTTCSSCEEETGGGTCSSCC-------SSCCCCHHHHC-
T ss_pred CCCCCEEECCCcCC-CCEEEeCCCCCCCceEehhcCCCCcCC-------CCCEECcCccCc
Confidence 34568999998654 789999994444 89999999987543 358999999753
No 29
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=97.70 E-value=1.2e-05 Score=62.73 Aligned_cols=50 Identities=30% Similarity=0.703 Sum_probs=40.4
Q ss_pred Ccccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 112 TKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 112 ~~~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
...+| +|+.....+.||.|+. |..|+|..|++++..+. ....|+|+.|+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~--C~~wfH~~Cv~~~~~~~-----~~~~w~C~~C~~ 67 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDD--CDDWYHWPCVGIMAAPP-----EEMQWFCPKCAN 67 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSS--SSSEEEHHHHTCSSCCC-----SSSCCCCTTTHH
T ss_pred CCcCCCCCCCCCCCCCEEEcCC--CCcccccccCCCCccCC-----CCCCEEChhccC
Confidence 44679 8998876678999999 99999999999875431 135899999976
No 30
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=97.66 E-value=4.9e-06 Score=86.88 Aligned_cols=56 Identities=29% Similarity=0.605 Sum_probs=44.9
Q ss_pred CCCCccccCCCCCC-CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 109 QSDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 109 q~~~~~rC~Cg~~~-~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
++....+|+|+... ..+.||+|+. |..|+|..|+++...+. ..+..|+|+.|+...
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~----~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHA----VDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGG----GGEEEBCCHHHHHHH
T ss_pred CCCCCeEEeCCCcCCCCCCeEEccC--CCCceeeeecCcCcccc----cCCCEEECCCCcCCc
Confidence 44567999999874 4789999999 99999999999975532 125689999999754
No 31
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.59 E-value=5.5e-06 Score=74.80 Aligned_cols=55 Identities=31% Similarity=0.696 Sum_probs=42.4
Q ss_pred CCCccccCCCCCC-CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 110 SDTKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 110 ~~~~~rC~Cg~~~-~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
.+...+|+|+... ..+.||+|+. |..|+|..|+++...+. ..+..|+|+.|+..+
T Consensus 5 ~~~~~~C~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~~----~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 5 SDTKLYCICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSEA----ELIDEYVCPQCQSTE 60 (174)
T ss_dssp --CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHH----TTCSSCCCHHHHHHH
T ss_pred CCCCcEeeCCCCCCCCCCEeECCC--CCchhChhhcCCchhhc----cCccCeecCCCcchh
Confidence 3456899999874 4678999998 99999999999864321 135689999999854
No 32
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=97.56 E-value=8.6e-06 Score=59.07 Aligned_cols=48 Identities=21% Similarity=0.558 Sum_probs=35.6
Q ss_pred cccCCCCCC-CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025 114 VCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (432)
Q Consensus 114 ~rC~Cg~~~-~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr 167 (432)
.-|+|+... .+..||+|++ .|..|+|..|+++...+. .+..|+|+.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-----~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-----ENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-----HHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-----CCCCEECCCCC
Confidence 456787765 3678999993 399999999999974321 13689999985
No 33
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=97.44 E-value=9.2e-06 Score=83.81 Aligned_cols=56 Identities=30% Similarity=0.634 Sum_probs=43.8
Q ss_pred CccccCCCCCC-CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCc
Q 014025 112 TKVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (432)
Q Consensus 112 ~~~rC~Cg~~~-~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dP 173 (432)
...+|+|+... .++.||+|+. |..|+|..|++++..+.+ .+..|+|+.|+......
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~~~----~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEKAA----DIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHHT----TEEECCCHHHHHHHCCC
T ss_pred CCeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCccccc----CCCEEECCCCccccCCc
Confidence 45799999874 4789999998 999999999999754311 24689999998855433
No 34
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.33 E-value=0.00016 Score=58.60 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=56.1
Q ss_pred eeeecCCCccccccccccccCcCccccccHHH---HHHHh-cCCCceecCC--CCCC-CCCCCeeecHHHHHHHHHhhc
Q 014025 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDV---FVELN-QRSRKWQCPI--CLRN-YSLENIIIDPYFNRITSKVLF 430 (432)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~---fL~~n-~~~~~W~CPi--C~k~-~~~~~L~ID~y~~~Il~~~~~ 430 (432)
...|.|||+...|+-|+....|.|. |+-.. ||..+ .......||+ |.+. +..++|+.|.-+.++++..++
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~--f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT--YEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE--EEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe--ecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 4568999999999999998889997 66555 44443 2345789999 9877 889999999999998887653
No 35
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=97.23 E-value=0.00021 Score=56.86 Aligned_cols=68 Identities=9% Similarity=0.033 Sum_probs=54.1
Q ss_pred ceeeeecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 357 ~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
.+.-.+.|||+...|+-|+... |.|. ||-......-.. ...||+|+..+..++|+-+..+.++++...
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~ 77 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLP-SGTV--MDRSIILRHLLN--SPTDPFNRQMLTESMLEPVPELKEQIQAWM 77 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECT-TSCE--EEHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHHHHHHHHHH
T ss_pred cCchheECcccCchhcCCeECC-CCCE--ECHHHHHHHHhc--CCCCCCCcCCCChHhcchHHHHHHHHHHHH
Confidence 4566799999999999999987 9997 776654433222 368999999999999999999888877643
No 36
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.15 E-value=0.00075 Score=55.15 Aligned_cols=68 Identities=9% Similarity=0.030 Sum_probs=54.1
Q ss_pred ceeeeecCCCccccccccccccCcC-ccccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 357 SIGVNLRCPMSGSRIKVAGRFKPCV-HMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 357 ~~~isL~CPls~~ri~~P~Rg~~C~-HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
.+.-.+.|||+...|+-|+.. .|. |. ||-......-.. ...||+|++++..++|+-+..+.++++...
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~~-~cG~ht--f~r~cI~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 86 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVVL-PSSRVT--VDRSTIARHLLS--DQTDPFNRSPLTMDQIRPNTELKEKIQRWL 86 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEEC-TTTCCE--EEHHHHHHHTTT--SCBCTTTCSBCCTTTSEECHHHHHHHHHHH
T ss_pred cCcHhcCCcCccccccCCeEC-CCCCeE--ECHHHHHHHHHh--CCCCCCCCCCCChhhceEcHHHHHHHHHHH
Confidence 455679999999999999996 466 86 776665554333 358999999999999999999988887653
No 37
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=96.73 E-value=0.0011 Score=51.04 Aligned_cols=65 Identities=11% Similarity=0.144 Sum_probs=50.8
Q ss_pred eecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
.|.|||....|+-|+.. .|.|. |...-....-. .....||+|++.+..++|..+..+.++++...
T Consensus 8 ~~~C~IC~~~~~~Pv~~-~CgH~--fc~~Ci~~~~~-~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 8 YFRCPISLELMKDPVIV-STGQT--YERSSIQKWLD-AGHKTCPKSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSCTTTSCCCSSEEEE-TTTEE--EEHHHHHHHHT-TTCCBCTTTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cCCCCCccccccCCEEc-CCCCe--ecHHHHHHHHH-HCcCCCCCCcCCCChhhCccCHHHHHHHHHHH
Confidence 67999999999999986 79997 44444333332 23678999999999999999988888887654
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.73 E-value=0.0017 Score=51.71 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=53.6
Q ss_pred eeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCC-CCCCeeecHHHHHHHHHhhc
Q 014025 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNY-SLENIIIDPYFNRITSKVLF 430 (432)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~Il~~~~~ 430 (432)
-.|.|||....+.-|+.-..|.|.=|.+- ..|+.. .....||+|.+.+ ..++|..+..+.++++.+++
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE---SDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH---CTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh---cCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 35789999999999997755999877643 345442 2347999999996 68899999999999987754
No 39
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.68 E-value=0.0017 Score=53.22 Aligned_cols=68 Identities=9% Similarity=0.051 Sum_probs=55.4
Q ss_pred ceeeeecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 357 ~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
.+.-.+.|||+...|+-|+... |.|. ||-......-.. ...||+|+.++..++|+-+..+.++++...
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~-cGht--f~r~~I~~~l~~--~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLP-SGTI--MDRSIILRHLLN--SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEET-TTEE--EEHHHHHHHTTS--CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred cCcHhhCCcCccCcccCCeECC-CCCE--EchHHHHHHHHc--CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 3456799999999999999987 9997 887665554332 468999999999999999999888887653
No 40
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.67 E-value=0.00055 Score=51.04 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=41.7
Q ss_pred eeecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
+++.||||+..|+-|+-...|.|. ||-++....-.+.. .||++++++..++|+
T Consensus 2 ~~~~CpIs~~~m~dPV~~~~sG~~--yer~~I~~~l~~~~--~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVLSPKSRTI--FEKSLLEQYVKDTG--NDPITNEPLSIEEIV 54 (61)
T ss_dssp --CCCTTTCSCCSSEEEETTTTEE--EEHHHHHHHHHHHS--BCTTTCCBCCGGGCE
T ss_pred CeEEecCCCCCCCCCEEeCCCCcE--EcHHHHHHHHHhCC--CCcCCcCCCChhhcE
Confidence 578999999999999998788886 98877665433323 499999999988886
No 41
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.44 E-value=0.00018 Score=65.68 Aligned_cols=58 Identities=24% Similarity=0.685 Sum_probs=38.5
Q ss_pred ccC-CCCCCCC----CCeeeecCCCCCCcccccceecCCCCCCCCCCCC--CcccccceeecccCcch
Q 014025 115 CCP-CGSSLET----ESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVP--ELFYCEICRLSRADPFW 175 (432)
Q Consensus 115 rC~-Cg~~~~~----~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p--~~f~C~~Crl~~~dPF~ 175 (432)
.|+ |+..-.. +.||+|+. |..|.|..|++++....+.+...| ..|+|+.|+-.. .|-|
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~-~~~~ 68 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH-PAEW 68 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS-SCHH
T ss_pred cCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC-CHHH
Confidence 574 8876432 34999999 999999999998632111100112 279999999844 4444
No 42
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=96.36 E-value=0.00013 Score=55.33 Aligned_cols=51 Identities=24% Similarity=0.615 Sum_probs=35.0
Q ss_pred ccCCCCCC-CCCCeeeec-CCCCCCcccccceecCCCCCCCCC-CCCCccccccee
Q 014025 115 CCPCGSSL-ETESMIKCE-DPRCPVWQHMSCVIIPEKPTEGNP-PVPELFYCEICR 167 (432)
Q Consensus 115 rC~Cg~~~-~~~~~i~C~-~~~C~~~qH~~Cv~~~~k~~~~~~-~~p~~f~C~~Cr 167 (432)
-++|+... ....||+|+ . |..|+|..||++....++.+. +....|+|+.|+
T Consensus 11 C~~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 11 CGICTNEVNDDQDAILCEAS--CQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CTTTCSBCCTTSCEEEBTTT--TCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CccCCCccCCCCCeEecccC--ccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 34577763 467899999 7 999999999999743211110 012379999884
No 43
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.21 E-value=0.004 Score=56.45 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=53.2
Q ss_pred eeeeecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHh
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKV 428 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~ 428 (432)
+.-.+.||||...|+-|+.. .|.|. ||-......-..... .||+|+.++..++|+-+..+..+++..
T Consensus 103 ip~~f~CPI~~elm~DPV~~-~~Ght--fer~~I~~~l~~~~~-tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCIT-PSGIT--YDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEEC-TTSCE--EEHHHHHHHHHHTCS-BCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeEC-CCCCE--ECHHHHHHHHHhCCC-CCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 35678999999999999998 79995 877665444322223 699999999999999999988887754
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.20 E-value=0.0031 Score=51.28 Aligned_cols=71 Identities=20% Similarity=0.407 Sum_probs=57.9
Q ss_pred ceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhhcc
Q 014025 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLFF 431 (432)
Q Consensus 357 ~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~~~ 431 (432)
++.-.+.|||-...+.-|+.-..|.|.=|.+- ..|+.... ..||+|.+.+..++|+...++.+|.+.++++
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----AQCPHCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----SBCTTTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----CCCCCCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 34556889999999999998789999977753 45655432 6899999999999999999999998887654
No 45
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=96.16 E-value=0.0016 Score=50.10 Aligned_cols=49 Identities=27% Similarity=0.583 Sum_probs=37.6
Q ss_pred cCCCCCC--CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCc
Q 014025 116 CPCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADP 173 (432)
Q Consensus 116 C~Cg~~~--~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dP 173 (432)
.+|+... ..+.||.|+. |..+.|..|++++.- | ...|+|+.|+..+..|
T Consensus 20 ~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~v-----P--~g~W~C~~C~~~~~~p 70 (71)
T 2ku3_A 20 SICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----P--EGQWLCRHCLQSRARP 70 (71)
T ss_dssp SSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSSC-----C--SSCCCCHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCEEECCC--CCCccccccCCCCcC-----C--CCCcCCccCcCcCccC
Confidence 3687653 5689999999 999999999998632 2 2479999998766444
No 46
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.16 E-value=0.0043 Score=50.08 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=55.1
Q ss_pred eeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhhc
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLF 430 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~~ 430 (432)
+.-.+.|||-...+.-|+.-..|.|.-|.+- ..|+. ..-.||+|...+...+|..+..+.++++.+++
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----YKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----TCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHH-----CCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 3446899999999999988889999876643 33443 23589999999999999999999999988764
No 47
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.15 E-value=0.0012 Score=54.71 Aligned_cols=52 Identities=23% Similarity=0.626 Sum_probs=36.4
Q ss_pred CCCCCC-CCCCeeeec-CCCCCCcccccceecCCCCCCCC-CCCCCcccccceeecc
Q 014025 117 PCGSSL-ETESMIKCE-DPRCPVWQHMSCVIIPEKPTEGN-PPVPELFYCEICRLSR 170 (432)
Q Consensus 117 ~Cg~~~-~~~~~i~C~-~~~C~~~qH~~Cv~~~~k~~~~~-~~~p~~f~C~~Crl~~ 170 (432)
+|+... ..+.||+|+ . |..|+|..||+++....+.+ .+....|+||.|+-.+
T Consensus 8 iC~~p~~~~~~mi~Cdd~--C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEAS--CQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp TTCSBCCTTSCEEECTTT--TCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCccCCCCCEEEecCC--cccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 477663 457899999 6 99999999999974321111 0113589999999744
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.08 E-value=0.0043 Score=54.97 Aligned_cols=70 Identities=29% Similarity=0.499 Sum_probs=55.0
Q ss_pred eceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCC-CCCCeeecHHHHHHHHHhh
Q 014025 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNY-SLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 356 ~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~-~~~~L~ID~y~~~Il~~~~ 429 (432)
..+.-.+.|||....+.-|+.-..|.|.-|.+- ..|+. .....||+|.+.+ ..++|..|..+.+++..+.
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~ 120 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRKKLVSKRSLRPDPNFDALISKIY 120 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHH
Confidence 345567899999999999998889999877653 34544 2357899999988 4577999999999998764
No 49
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.95 E-value=0.0016 Score=68.01 Aligned_cols=41 Identities=24% Similarity=0.593 Sum_probs=33.4
Q ss_pred CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 123 ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 123 ~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
.+..||+|+. |..|+|..||+++....+ ....|+||.|+..
T Consensus 54 ~~~~mI~CD~--C~~WfH~~CVgi~~~~a~----~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 54 NDFQWIGCDS--CQTWYHFLCSGLEQFEYY----LYEKFFCPKCVPH 94 (528)
T ss_dssp STTSEEECTT--TCCEEEGGGTTCCGGGTT----TEEECCCTTTHHH
T ss_pred cCCCEEECCC--CCcCCCCcCCCCChhHhc----CCCeEECcCCcCC
Confidence 4578999999 999999999999865422 2468999999863
No 50
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=95.93 E-value=0.0027 Score=50.89 Aligned_cols=54 Identities=26% Similarity=0.570 Sum_probs=40.5
Q ss_pred ccc-CCCCCC--CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCcchh
Q 014025 114 VCC-PCGSSL--ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWV 176 (432)
Q Consensus 114 ~rC-~Cg~~~--~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dPF~~ 176 (432)
..| +|+... ..+.||.|+. |..++|..|++++.- | ...|+|+.|......+|.+
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~v-----P--~g~W~C~~C~~~~~~~~~~ 82 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYI-----P--EGQWLCRHCLQSRARPALE 82 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSSC-----C--SSCCCCHHHHHHTTSCC--
T ss_pred CcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCcc-----C--CCceECccccCccchhhhh
Confidence 344 788654 4579999999 999999999998632 2 2479999999877766654
No 51
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.83 E-value=0.0049 Score=49.80 Aligned_cols=54 Identities=24% Similarity=0.561 Sum_probs=39.7
Q ss_pred CCCCcccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 109 QSDTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 109 q~~~~~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
+......| +|+.....+.||.|+. |..+.|..|+..+-. .+| ...|+|+.|+..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~--C~~~~H~~Cl~Ppl~---~~P--~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDG--CDDNYHIFCLLPPLP---EIP--RGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTT--TCCEECSSSSSSCCS---SCC--SSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCC--CCchhccccCCCCcc---cCC--CCCcCCccCcCc
Confidence 33444567 6998766678999999 999999999985422 222 247999999763
No 52
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=95.77 E-value=0.0041 Score=44.36 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=34.1
Q ss_pred CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+|+.....+.||.|+. |..|+|..|+..+-+ ..| ...++|+.|+.
T Consensus 5 vC~~~~~~~~ll~Cd~--C~~~~H~~Cl~p~l~---~~P--~g~W~C~~C~~ 49 (51)
T 1f62_A 5 VCRKKGEDDKLILCDE--CNKAFHLFCLRPALY---EVP--DGEWQCPACQP 49 (51)
T ss_dssp TTCCSSCCSCCEECTT--TCCEECHHHHCTTCC---SCC--SSCCSCTTTSC
T ss_pred CCCCCCCCCCEEECCC--CChhhCcccCCCCcC---CCC--CCcEECcCccc
Confidence 5887766788999998 999999999975422 222 24799999964
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.60 E-value=0.0078 Score=50.23 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=52.4
Q ss_pred eeeecCCCccccccccccccCcCccccccHH-HHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhhc
Q 014025 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLF 430 (432)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~~ 430 (432)
.-.|.|||-...+.-|+.-..|.|.-|..-- .|+. ..||+|.+.+...+|..+..+..+++.+++
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 4458899999999999988799998776532 2222 579999999999999999999998887653
No 54
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=95.51 E-value=0.021 Score=46.80 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=53.3
Q ss_pred ceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCC----CeeecHHHHHHHHHhh
Q 014025 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLE----NIIIDPYFNRITSKVL 429 (432)
Q Consensus 357 ~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~----~L~ID~y~~~Il~~~~ 429 (432)
.+.-.+.|||-...+.-|+....|.|.-|.+- ..|+.. .-.||+|.+.+... +|..|..+.++++.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~ 83 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-----SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLV 83 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-----CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-----CCcCcCCCccccccCcccccCcCHHHHHHHHHHh
Confidence 34556789999999999999889999876653 334331 26899999998876 8999999999987653
No 55
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=95.51 E-value=0.0091 Score=45.19 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=33.9
Q ss_pred cccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 113 ~~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
..+| +|+. .+.+|.|+. |..++|..|+..+-+ ..| ...|+|+.|+-
T Consensus 12 ~~~C~vC~~---~~~ll~Cd~--C~~~~H~~Cl~P~l~---~~P--~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGD---GTDVLRCTH--CAAAFHWRCHFPAGT---SRP--GTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSC---CTTCEECSS--SCCEECHHHHCTTTC---CCC--SSSCCCTTTTT
T ss_pred CCCcCCCCC---CCeEEECCC--CCCceecccCCCccC---cCC--CCCEECccccC
Confidence 3467 5874 467999999 999999999975422 222 24799999975
No 56
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=95.47 E-value=0.014 Score=49.00 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=52.7
Q ss_pred eeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCC-CCeeecHHHHHHHHHh
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSL-ENIIIDPYFNRITSKV 428 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~-~~L~ID~y~~~Il~~~ 428 (432)
+.-.+.|||....+.-|+.- .|.|.=|.+- ..|+. .....||+|.+.+.. .+|..+..+.++++.+
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~ 116 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRYDLGRSYAMQVNQPLQTVLNQL 116 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHH
T ss_pred CccCCCCCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 34568999999999999876 8999877754 34554 345699999999987 7899999999988754
No 57
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=95.46 E-value=0.013 Score=50.44 Aligned_cols=47 Identities=34% Similarity=0.455 Sum_probs=41.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccccc
Q 014025 5 ASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVS 51 (432)
Q Consensus 5 ~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~~~ 51 (432)
...+++|..+...+|+++|.-||++.+|.|.||++||+++|..-.+.
T Consensus 66 ~k~~e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~FL~~P~~~ 112 (131)
T 2jx3_A 66 KKKEEMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNFLMHPKPS 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHTTTSCC--
T ss_pred HHHHHHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhCcccc
Confidence 34788999999999999999999999999999999999999986533
No 58
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.22 E-value=0.011 Score=48.42 Aligned_cols=67 Identities=18% Similarity=0.315 Sum_probs=47.7
Q ss_pred eecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeec----HHHHHHHHHhhc
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIID----PYFNRITSKVLF 430 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID----~y~~~Il~~~~~ 430 (432)
.+.|||-+..+.-|+. ..|.|.-|.+- ..|+.. ......||+|...+...+|..+ ..+.++++.++.
T Consensus 21 ~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~--~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~~~~ 92 (112)
T 1jm7_A 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQ--KKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKIICA 92 (112)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHS--SSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHHHHH
T ss_pred CCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHh--CCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHHHHH
Confidence 5689999999999988 58999877764 344442 2345799999999988877654 555555554443
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.11 E-value=0.014 Score=55.30 Aligned_cols=65 Identities=8% Similarity=-0.096 Sum_probs=49.7
Q ss_pred eeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHh
Q 014025 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKV 428 (432)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~ 428 (432)
.-.+.|||+...|+-|+... |.|.=|-.. +.|+..+. . .||+|+.++..++|+.+.-+.++++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~--~--~cP~~~~~~~~~~l~~n~~l~~~i~~~ 271 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVG--H--FNPVTRSPLTQEQLIPNLAMKEVIDAF 271 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTC--S--SCTTTCCCCCGGGCEECHHHHHHHHHH
T ss_pred CcccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCC--C--CCcCCCCCCchhcCcccHHHHHHHHHH
Confidence 34578999999999999865 999744332 34554322 2 299999999999999999888888754
No 60
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=95.08 E-value=0.015 Score=43.10 Aligned_cols=48 Identities=27% Similarity=0.621 Sum_probs=35.7
Q ss_pred CCcccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 111 DTKVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 111 ~~~~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
.....| +|+. .+.|+.|+. |..++|..|+..+-. ..| ...++|+.|+-
T Consensus 9 ~~~~~C~vC~~---~g~ll~CD~--C~~~fH~~Cl~p~l~---~~p--~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQ---GGEIILCDT--CPRAYHMVCLDPDME---KAP--EGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSC---CSSEEECSS--SSCEEEHHHHCTTCC---SCC--CSSCCCTTGGG
T ss_pred CCCCCCccCCC---CCcEEECCC--CChhhhhhccCCCCC---CCC--CCceECccccc
Confidence 344577 4886 368999998 999999999997522 112 24799999975
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=95.07 E-value=0.018 Score=48.01 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=55.0
Q ss_pred eceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 356 ~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
..+.-.+.|||-...+.-|+.. .|.|.=|.+- ..|+.... ..||+|.+.+..+++.-|.++.+++..++
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQT-PCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEEC-CcCChhhHHHHHHHHhhCC----CCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 3455668999999999999885 7999877654 34554332 38999999999999999999999888764
No 62
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.01 E-value=0.022 Score=49.88 Aligned_cols=67 Identities=15% Similarity=0.356 Sum_probs=53.4
Q ss_pred eeeeecCCCccccccccccccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCC-CeeecHHHHHHHHHhh
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE-NIIIDPYFNRITSKVL 429 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~-~L~ID~y~~~Il~~~~ 429 (432)
+.-.+.|||....+.-|+. ..|.|.-|.+ +..|+. .....||+|...+... +|..+..+.++++.+.
T Consensus 75 l~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~ 143 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF 143 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred CccCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence 3445889999999999998 6999987764 344554 2446899999999988 8999999999988653
No 63
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.92 E-value=0.02 Score=42.44 Aligned_cols=53 Identities=13% Similarity=0.300 Sum_probs=40.4
Q ss_pred eeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCe
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENI 415 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (432)
+.-.+.|||-...++-|+. ..|.|.-|.+- ..|+. .....||+|.+.+..++|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLS----SSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHT----TSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHH----hCcCCCCCCCcCCChhhc
Confidence 3446889999999999998 69999866542 33442 345689999999988775
No 64
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.73 E-value=0.058 Score=41.58 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=44.2
Q ss_pred eeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhhc
Q 014025 360 VNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLF 430 (432)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~~ 430 (432)
..+.|||-...+.-|+. ..|.|.-|.+- ..|++. ...||+|.+.+. ..+..+. +|++.+++
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~-~~~~~~~---~l~~~~~~ 75 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRA-----TPRCYICDQPTG-GIFNPAK---ELMAKLQK 75 (81)
T ss_dssp CCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHH-----CSBCSSSCCBCC-SCCEECH---HHHHHHSS
T ss_pred CCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHC-----CCcCCCcCcccc-ccCCcHH---HHHHHHHh
Confidence 45789999999999986 68999877653 344432 458999999986 6777774 44444443
No 65
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=94.42 E-value=0.007 Score=46.80 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=47.4
Q ss_pred eeeeecCCCccccccccccccCcCccccccHH-HHHHHhc-CCCceecCCCCCCCCCCCeeecHHHHH
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQ-RSRKWQCPICLRNYSLENIIIDPYFNR 423 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~-~~~~W~CPiC~k~~~~~~L~ID~y~~~ 423 (432)
+.-.+.|||-...+.-|+. ..|.|.-|.+-- .|+.... ......||+|.+.+..++|..+..+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred CccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 3446789999999999986 569998776543 3444322 235789999999999999887754443
No 66
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=94.18 E-value=0.027 Score=42.17 Aligned_cols=52 Identities=19% Similarity=0.407 Sum_probs=35.8
Q ss_pred ccc-CCCCC--CCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 114 VCC-PCGSS--LETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 114 ~rC-~Cg~~--~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
..| +|+.. ...+.||.|+. |..++|..|++.+-.. +.++ -...|+|+.|...
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~-~~~~-p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDS-SVID-SDEKWLCRQCVFA 61 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCH-HHHH-SSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccc-cccC-CCCCEECCCCcCc
Confidence 345 68865 34589999999 9999999999875221 0000 1247999999764
No 67
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=94.09 E-value=0.025 Score=43.21 Aligned_cols=46 Identities=26% Similarity=0.718 Sum_probs=34.8
Q ss_pred CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+||.....+.||.|+. |..++|..|++.+- ..+| ....++|+.|+.
T Consensus 23 ~C~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl---~~~P-~g~~W~C~~C~~ 68 (70)
T 3asl_A 23 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPL---SSVP-SEDEWYCPECRN 68 (70)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEEGGGSSSCC---SSCC-SSSCCCCTTTSC
T ss_pred CCCCcCCCCCEEEcCC--CCCceecccCCCCc---CCCC-CCCCcCCcCccC
Confidence 5787777789999999 99999999998542 2222 122799999974
No 68
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.91 E-value=0.043 Score=41.39 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=42.5
Q ss_pred eeeecCCCccccccccccccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
.-.+.|||-...+.-|+.-..|.|.-|.+ +..|++. .-.||+|.+.+..+++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCcccCccccc
Confidence 44689999999999999888999998875 4556643 35899999999877754
No 69
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.86 E-value=0.067 Score=40.11 Aligned_cols=56 Identities=16% Similarity=0.440 Sum_probs=41.7
Q ss_pred eeeeecCCCccccccccccccCcCccccccHHHHHHHhc-CCCceecCCCCCCCCCCCee
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ-RSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC~k~~~~~~L~ 416 (432)
+.-.+.|||-+..+.-|+.- .|.|.-|.+- +...-. ....-.||+|.+.+..++++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~-~CgH~fC~~C--i~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI-DCGHNFCLKC--ITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC-TTCCEEEHHH--HHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEc-CCCChhhHHH--HHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 45568999999999999887 9999966543 333222 23567899999999888763
No 70
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=93.74 E-value=0.04 Score=41.43 Aligned_cols=48 Identities=25% Similarity=0.652 Sum_probs=34.9
Q ss_pred cccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 113 ~~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
...| +|+.. +.||.|+. |..++|..|+..+-. .+| ...|+|+.|...+
T Consensus 8 ~~~C~vC~~~---g~ll~CD~--C~~~fH~~Cl~ppl~---~~P--~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 8 EDECAVCRDG---GELICCDG--CPRAFHLACLSPPLR---EIP--SGTWRCSSCLQAT 56 (66)
T ss_dssp CCSBSSSSCC---SSCEECSS--CCCEECTTTSSSCCS---SCC--SSCCCCHHHHHTC
T ss_pred CCCCccCCCC---CCEEEcCC--CChhhcccccCCCcC---cCC--CCCeECccccCcc
Confidence 3456 58853 67999999 999999999985422 222 2479999997643
No 71
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=93.47 E-value=0.069 Score=44.24 Aligned_cols=46 Identities=22% Similarity=0.637 Sum_probs=33.9
Q ss_pred CccccC-CCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025 112 TKVCCP-CGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (432)
Q Consensus 112 ~~~rC~-Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr 167 (432)
....|. |+ .++.||-|+...|..|+|..|+++...| ...|+||.|+
T Consensus 14 ~~~~C~~C~---~~G~ll~CD~~~Cp~~fH~~Cl~L~~~P-------~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCG---DGGELVMCDKKDCPKAYHLLCLNLTQPP-------YGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTC---CCSEEEECCSTTCCCEECTGGGTCSSCC-------SSCCCCGGGB
T ss_pred CCCCCCcCC---CCCcEeEECCCCCCcccccccCcCCcCC-------CCCEECCCCC
Confidence 345676 66 3578999995459999999999865432 2479999774
No 72
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=93.43 E-value=0.061 Score=47.58 Aligned_cols=69 Identities=16% Similarity=0.274 Sum_probs=55.0
Q ss_pred eceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhh
Q 014025 356 DSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVL 429 (432)
Q Consensus 356 ~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~ 429 (432)
+.+.-.|.|||-...+..|+. ..|.|.=|.+- ..|+.... ..||+|...+..+++.-|.++.+++..++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAG----HKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCC----CCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 455667899999999999988 58999877653 34444332 29999999999999999999999887664
No 73
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.42 E-value=0.049 Score=42.38 Aligned_cols=46 Identities=30% Similarity=0.767 Sum_probs=34.6
Q ss_pred CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+|+.....+.|+.|+. |..++|..|+..+- ..+|. ...++|+.|..
T Consensus 31 vC~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl---~~~P~-g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPNMQLLCDE--CNVAYHIYCLNPPL---DKVPE-EEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCSTTEEECSS--SCCEEETTSSSSCC---SSCCC-SSCCCCTTTCC
T ss_pred CcCCcCCCCCEEEcCC--CCccccccccCCCc---cCCCC-CCCcCCcCccC
Confidence 5888777889999999 99999999998542 22221 12689999963
No 74
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.35 E-value=0.017 Score=44.59 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=46.4
Q ss_pred eeeeecCCCccccccccccccCcCccccccHH-HHHHHh-cCCCceecCCCCCCCCCCCeeecHHH
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELN-QRSRKWQCPICLRNYSLENIIIDPYF 421 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n-~~~~~W~CPiC~k~~~~~~L~ID~y~ 421 (432)
+.-.+.|||-+..+.-|+.. .|.|.-|.+-- .|+... .......||+|.+.+..++|..+..+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l 80 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHV 80 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCC
T ss_pred ccCCCCCCCCCcccCCceeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHH
Confidence 44568999999999999875 89998776643 344432 23446899999999998888766443
No 75
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=93.34 E-value=0.044 Score=49.31 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=35.1
Q ss_pred ccccCCCCCC-CCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 113 KVCCPCGSSL-ETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 113 ~~rC~Cg~~~-~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
...|.||..- -+..|++|.. |..|.|..|++...++..+. ..--.|.|..|.-
T Consensus 5 ~~yCYCG~~~~~~~~mLqC~~--C~qWFH~~Cl~~~~~~~lp~-~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 5 AGSVDEENGRQLGEVELQCGI--CTKWFTADTFGIDTSSCLPF-MTNYSFHCNVCHH 58 (177)
T ss_dssp ------CTTCCTTSCEEECTT--TCCEEEGGGGTCCCTTCCTT-CCSEEEECTTTST
T ss_pred eeEEEcCCCCCCCceeEeecc--ccceecHHHhcccccCcccc-ceeEEEEccccCC
Confidence 4689999864 3678999999 99999999998766554331 1234678988866
No 76
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.12 E-value=0.068 Score=44.17 Aligned_cols=67 Identities=13% Similarity=0.194 Sum_probs=50.7
Q ss_pred eeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCee-ecHHHHHHHHHhh
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII-IDPYFNRITSKVL 429 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~-ID~y~~~Il~~~~ 429 (432)
+.-.+.|||-...+.-|+. ..|.|.-|.+- ..|+... .-.||+|.+.+...+|. .+..+.++++.++
T Consensus 20 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVE-TSCKHLFCRICILRCLKVM----GSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHT----CSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred ccCCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHC----cCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 3447899999999999998 58999877653 3455432 34799999999988865 5777777777654
No 77
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=93.11 E-value=0.0043 Score=52.54 Aligned_cols=40 Identities=25% Similarity=0.644 Sum_probs=27.1
Q ss_pred CeeeecCCCCCCcccccceecCCCC---CCCCCCCCCcccccceee
Q 014025 126 SMIKCEDPRCPVWQHMSCVIIPEKP---TEGNPPVPELFYCEICRL 168 (432)
Q Consensus 126 ~~i~C~~~~C~~~qH~~Cv~~~~k~---~~~~~~~p~~f~C~~Crl 168 (432)
+||+|+. |..|+|..|++++... ++.+| ....|.||.|.-
T Consensus 1 ~mi~c~~--c~~w~H~~c~~~~~~~~~~l~~lp-~~~~~~c~~C~~ 43 (140)
T 2ku7_A 1 SMMQCGK--CDRWVHSKCENLSDEMYEILSNLP-ESVAYTCVNCTE 43 (140)
T ss_dssp CCCCCSC--CSSCHHHHHCCCCHHHHHHHHSSC-TTTTCCSSCCTT
T ss_pred Ccccccc--CCCccCCcccccCHHHHHHHhhcc-ccceeeCccccc
Confidence 5999999 9999999999886311 01111 122688888854
No 78
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=92.79 E-value=0.08 Score=40.16 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=39.9
Q ss_pred eeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCC
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
+.-.+.|||-...+.-|+.-..|.|.-|.+- ..|+..+ ....||+|.+.....+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES---DEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS---SSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc---CCCcCCCCCCcCCCcc
Confidence 3456899999999999999666999988763 4555532 3568999998754433
No 79
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=92.62 E-value=0.07 Score=44.01 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=47.8
Q ss_pred eecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCC-------CCeeecHHHHHHHHHh
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSL-------ENIIIDPYFNRITSKV 428 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~-------~~L~ID~y~~~Il~~~ 428 (432)
.+.|||-...+.-|+.- .|.|.-|.+-- ... .......||+|.+.+.. .++.+|..+.++++..
T Consensus 15 ~~~C~iC~~~~~~p~~~-~CgH~fC~~Ci--~~~-~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~ 85 (115)
T 3l11_A 15 ECQCGICMEILVEPVTL-PCNHTLCKPCF--QST-VEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKH 85 (115)
T ss_dssp HHBCTTTCSBCSSCEEC-TTSCEECHHHH--CCC-CCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred CCCCccCCcccCceeEc-CCCCHHhHHHH--HHH-HhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHH
Confidence 57899999999999887 89998665432 111 12235789999998864 7788998888887653
No 80
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=92.52 E-value=0.064 Score=39.44 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=33.2
Q ss_pred ccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 114 ~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
..| +|+.. +.||.|+. |..++|..|+..+-+ ..| ...++|+.|.-
T Consensus 6 ~~C~vC~~~---g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p--~g~W~C~~C~~ 51 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIP--KGMWICPRCQD 51 (60)
T ss_dssp SSCTTTCCC---SSCEECSS--SSCEECGGGSSSCCS---SCC--CSCCCCHHHHH
T ss_pred CCCcCCCCC---CcEEEcCC--CCcCEECCcCCCCcC---CCC--CCceEChhccC
Confidence 345 58764 68999998 999999999985422 222 24799999964
No 81
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=92.34 E-value=0.081 Score=41.17 Aligned_cols=46 Identities=26% Similarity=0.728 Sum_probs=33.4
Q ss_pred CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+|+.....+.+|.|+. |..+.|..|+..+- ..+|. ...++|+.|+-
T Consensus 31 vC~~~~d~~~ll~CD~--C~~~yH~~Cl~PpL---~~~P~-g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPL---SSVPS-EDEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGGGEEECTT--TCCEEETTTSSSCC---SSCCS-SSCCCCTTTC-
T ss_pred ccCCCCCCcceeEeCC--CCCccCcccCCCcc---cCCCC-CCceECcCccc
Confidence 4676666789999999 99999999998542 22222 22399999973
No 82
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=92.08 E-value=0.083 Score=39.07 Aligned_cols=45 Identities=24% Similarity=0.653 Sum_probs=33.3
Q ss_pred ccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 114 ~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
..| +|+. .+.++.|+. |..++|..|+..+-. .+| ...|+|+.|+.
T Consensus 10 ~~C~vC~~---~g~ll~Cd~--C~~~fH~~Cl~ppl~---~~p--~g~W~C~~C~~ 55 (61)
T 1mm2_A 10 EFCRVCKD---GGELLCCDT--CPSSYHIHCLNPPLP---EIP--NGEWLCPRCTC 55 (61)
T ss_dssp SSCTTTCC---CSSCBCCSS--SCCCBCSSSSSSCCS---SCC--SSCCCCTTTTT
T ss_pred CcCCCCCC---CCCEEEcCC--CCHHHcccccCCCcC---cCC--CCccCChhhcC
Confidence 356 4875 468999999 999999999985422 222 24799999975
No 83
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=91.86 E-value=0.01 Score=45.46 Aligned_cols=60 Identities=20% Similarity=0.337 Sum_probs=41.4
Q ss_pred eecCCCccccccccccccCcCccccccHHH-HHHHh--cCCCceecCCCCCCCCCCCeeecHHH
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDV-FVELN--QRSRKWQCPICLRNYSLENIIIDPYF 421 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~-fL~~n--~~~~~W~CPiC~k~~~~~~L~ID~y~ 421 (432)
.+.|||-+..+.-|+. ..|.|.-|.+--. |+... .......||+|.+.+..++|..+..+
T Consensus 12 ~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l 74 (79)
T 2egp_A 12 EVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHL 74 (79)
T ss_dssp CCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSS
T ss_pred CCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHH
Confidence 5789999999999987 5899986654321 22111 11236799999999988887765443
No 84
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=91.77 E-value=0.083 Score=45.20 Aligned_cols=61 Identities=23% Similarity=0.514 Sum_probs=42.1
Q ss_pred eecCCCccccccccccccCcCccccccHH-HHHHHhcCCCceecCCCCCCCCCC--CeeecHHHHHHHHH
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLE--NIIIDPYFNRITSK 427 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~--~L~ID~y~~~Il~~ 427 (432)
.|.|||....+.-|+- ..|.|.=|.+-- .|+. ..-.||+|.+++... ++.+|..+.++++.
T Consensus 53 ~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~~ 116 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMK-----RKIECPICRKDIKSKTYSLVLDNCINKMVNN 116 (138)
T ss_dssp HSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTT-----TCSBCTTTCCBCCCEEECHHHHHHHHHHHTT
T ss_pred cCCCcccCcccCCceE-CCCCCCccHHHHHHHHH-----cCCcCCCCCCcCCCCCCccchhHHHHHHHHH
Confidence 3679999999999875 589998776642 2332 234799999887532 45666666666543
No 85
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.56 E-value=0.15 Score=36.81 Aligned_cols=44 Identities=27% Similarity=0.727 Sum_probs=32.6
Q ss_pred ccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (432)
Q Consensus 114 ~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr 167 (432)
..| +|+.. +.||.|+. |..++|..|+..+-+ ..| ...++|+.|.
T Consensus 10 ~~C~vC~~~---g~ll~Cd~--C~~~~H~~Cl~ppl~---~~p--~g~W~C~~C~ 54 (56)
T 2yql_A 10 DFCSVCRKS---GQLLMCDT--CSRVYHLDCLDPPLK---TIP--KGMWICPRCQ 54 (56)
T ss_dssp CSCSSSCCS---SCCEECSS--SSCEECSSSSSSCCC---SCC--CSSCCCHHHH
T ss_pred CCCccCCCC---CeEEEcCC--CCcceECccCCCCcC---CCC--CCceEChhhh
Confidence 456 48864 68999998 999999999985422 222 2479999885
No 86
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=91.05 E-value=0.13 Score=48.18 Aligned_cols=46 Identities=26% Similarity=0.718 Sum_probs=30.8
Q ss_pred CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+|+.....+.|+.|+. |..+.|..|+..+- ...| ....++|+.|+.
T Consensus 179 vC~~~~~~~~lL~CD~--C~~~yH~~CL~PPL---~~vP-~G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQDPDKQLMCDE--CDMAFHIYCLDPPL---SSVP-SEDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC--CCEECSS--SCCEECSCC--CCC---CSCC-SSSCCCCGGGC-
T ss_pred CCCCCCCCCCeEEcCC--CCcceeCccCCCCc---ccCC-CCCCCCCcCCcC
Confidence 4787767789999999 99999999998542 2322 112699999974
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=90.41 E-value=0.16 Score=41.86 Aligned_cols=50 Identities=26% Similarity=0.576 Sum_probs=37.3
Q ss_pred cc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeeccc
Q 014025 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRA 171 (432)
Q Consensus 115 rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~ 171 (432)
.| +|+.......++.|+. |..++|..|+..+- ..+|. ..|+|+.|+..+.
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~ppl---~~~P~--g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDT--CDKGYHTFCLQPVM---KSVPT--NGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCTTEEECSS--SCCEEEGGGSSSCC---SSCCS--SCCCCHHHHCCSC
T ss_pred cccccCccCCCCCeeECCC--CCcHHhHHhcCCcc---ccCCC--CCcCCcCCcCcCC
Confidence 45 4887766678999999 99999999998542 23222 4799999977554
No 88
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=90.26 E-value=0.13 Score=42.93 Aligned_cols=45 Identities=29% Similarity=0.702 Sum_probs=34.9
Q ss_pred CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+|+.....+.++.|+. |..++|..|+..+ +..+|. ..|+|+.|+.
T Consensus 63 ~C~~~~~~~~ll~Cd~--C~~~yH~~Cl~pp---l~~~P~--g~W~C~~C~~ 107 (114)
T 2kwj_A 63 LCGTSENDDQLLFCDD--CDRGYHMYCLNPP---VAEPPE--GSWSCHLCWE 107 (114)
T ss_dssp TTTCCTTTTTEEECSS--SCCEEETTTSSSC---CSSCCS--SCCCCHHHHH
T ss_pred cccccCCCCceEEcCC--CCccccccccCCC---ccCCCC--CCeECccccc
Confidence 5888777789999999 9999999999854 223222 3799999965
No 89
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=89.45 E-value=0.068 Score=46.22 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=53.6
Q ss_pred ceEeeceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCC---------CCeeecHHH
Q 014025 352 EVVADSIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSL---------ENIIIDPYF 421 (432)
Q Consensus 352 ev~~~~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~---------~~L~ID~y~ 421 (432)
++....+.-.|.|||-...+.-|+. ..|.|.=|..- ..|+. .....||+|.+++.+ +++.-|.++
T Consensus 22 ~~~~~~l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 22 TLLGTKLEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILS----SGPQNCAACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp GGTGGGCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGG----GSCEECHHHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred hhhhccCCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHh----cCCCCCCCCCCcccccccccccchhhhcccHHH
Confidence 4444566778999999999999988 49999877652 33432 234689999987543 356789999
Q ss_pred HHHHHHhh
Q 014025 422 NRITSKVL 429 (432)
Q Consensus 422 ~~Il~~~~ 429 (432)
.+.+..++
T Consensus 97 ~~~i~~L~ 104 (141)
T 3knv_A 97 RREVESLP 104 (141)
T ss_dssp HHHHHTSE
T ss_pred HHHHcccc
Confidence 88887765
No 90
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=89.35 E-value=0.26 Score=36.27 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=34.5
Q ss_pred ecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCC
Q 014025 362 LRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
..|||-...+.-|+....|.|.-|++- ..|+..+ ..||+|.+.+.
T Consensus 6 ~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----PTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----CSTTTTCCCCC
T ss_pred CCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----CcCcCCChhhH
Confidence 469999999988888889999877764 3455432 48999998765
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=89.32 E-value=0.19 Score=38.21 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=36.9
Q ss_pred eeecCCCccccccccc--cccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 360 VNLRCPMSGSRIKVAG--RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 360 isL~CPls~~ri~~P~--Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
-.+.|||-+..+..|. +...|.|.-|++ +..|+.. ...||+|.+.+...++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-----HDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-----TCSCTTTCCCCCCSCSC
T ss_pred CCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-----CCcCcCcCCccCCcccC
Confidence 3568999988887554 345799987666 3455532 25899999998877664
No 92
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.21 E-value=0.48 Score=33.48 Aligned_cols=32 Identities=28% Similarity=0.543 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhCCCCCCChHHHHHHHHHhcc
Q 014025 15 RIKELKDVLTQLGLSKQGKKQDLVDRILAILS 46 (432)
Q Consensus 15 Rv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~ 46 (432)
--.|||.-|..+|-+..|...||+||+..|..
T Consensus 12 ~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~ 43 (58)
T 2do5_A 12 AAQELQAKLAEIGAPIQGNREELVERLQSYTR 43 (58)
T ss_dssp CHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhCCcccccHHHHHHHHHHHhh
Confidence 34799999999999999999999999998843
No 93
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.16 E-value=0.3 Score=35.71 Aligned_cols=52 Identities=19% Similarity=0.378 Sum_probs=37.7
Q ss_pred ecCCCccc-ccccccc---ccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCeee
Q 014025 362 LRCPMSGS-RIKVAGR---FKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENIII 417 (432)
Q Consensus 362 L~CPls~~-ri~~P~R---g~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~I 417 (432)
+.|||-.. .+.-|.+ ...|.|.-|.+- ..++. .....||+|++.+..++++-
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV----RGAGNCPECGTPLRKSNFRV 60 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHH----TTSSSCTTTCCCCSSCCCEE
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHH----cCCCcCCCCCCcccccccee
Confidence 56999998 7888864 568999876543 23332 13568999999999888754
No 94
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=88.78 E-value=0.3 Score=46.62 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=30.4
Q ss_pred HhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHh
Q 014025 11 LAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAI 44 (432)
Q Consensus 11 l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~ 44 (432)
+..+.++.||.|+...|++.+|+|++|++|+.+.
T Consensus 1 ~~~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 1 MATVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp --CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 3568899999999999999999999999999885
No 95
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.34 E-value=0.13 Score=38.53 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=34.4
Q ss_pred eecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCC
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
.+.|||-...+..|+.. .|.|.-|.+- +...-. ....||+|.+.+..++
T Consensus 15 ~~~C~IC~~~~~~~~~~-~CgH~fC~~C--i~~~~~--~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSL-PCKHVFCYLC--VKGASW--LGKRCALCRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSSBCSSEEEE-TTTEEEEHHH--HHHCTT--CSSBCSSSCCBCCHHH
T ss_pred CCCCccCCcccCCCEEc-cCCCHHHHHH--HHHHHH--CCCcCcCcCchhCHhh
Confidence 35799999999999776 6999965543 222222 2368999999876544
No 96
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.92 E-value=0.28 Score=37.01 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=33.8
Q ss_pred ecCCCcccccccc--ccccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCC
Q 014025 362 LRCPMSGSRIKVA--GRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLE 413 (432)
Q Consensus 362 L~CPls~~ri~~P--~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~ 413 (432)
..|||-+..+..+ ++...|.|.=|.+ +..||..+ ..||+|.+.+.+.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----RTCPICRADSGPS 73 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----SSCTTTCCCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----CcCcCcCCcCCCC
Confidence 4688888887666 4556799987666 45566543 4899999987654
No 97
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=87.81 E-value=0.29 Score=35.30 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=36.7
Q ss_pred ecCCCccccccccc------cccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 362 LRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
+.|||-...+..|. ....|.|.-|.+- ..|+.. ...||+|.+.+..+++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 60 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCccCCcccee
Confidence 46899998888774 5568999866553 345543 34899999998877764
No 98
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=87.60 E-value=0.21 Score=41.43 Aligned_cols=43 Identities=16% Similarity=0.435 Sum_probs=31.2
Q ss_pred CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 124 ~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
...|++|.. |..|.|..|++++...... .+.++.|.||.|+..
T Consensus 72 ~~~m~~C~~--C~~~~H~~C~~~~~~~~~~-~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 72 EKKLMECCI--CNEIVHPGCLQMDGEGLLN-EELPNCWECPKCYQE 114 (117)
T ss_dssp GGSCEEETT--TCCEECGGGCCSCCCCEEC-SSSSSEEECTTTC--
T ss_pred CcceEEeee--cCCeEECCCCCCCcccccc-ccCCCCeECCCCcCC
Confidence 456999999 9999999999886332111 345678999999873
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.20 E-value=0.61 Score=37.14 Aligned_cols=46 Identities=22% Similarity=0.704 Sum_probs=33.4
Q ss_pred cccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 113 KVCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 113 ~~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
...| +|+.. +.++.|+. |...+|..|+..+- ..+| ...|+|+.|+.
T Consensus 25 ~~~C~vC~~~---g~LL~CD~--C~~~fH~~Cl~PpL---~~~P--~g~W~C~~C~~ 71 (88)
T 1fp0_A 25 ATICRVCQKP---GDLVMCNQ--CEFCFHLDCHLPAL---QDVP--GEEWSCSLCHV 71 (88)
T ss_dssp SSCCSSSCSS---SCCEECTT--SSCEECTTSSSTTC---CCCC--SSSCCCCSCCC
T ss_pred CCcCcCcCCC---CCEEECCC--CCCceecccCCCCC---CCCc--CCCcCCccccC
Confidence 3456 47754 57999999 99999999986532 2222 24799999986
No 100
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=86.43 E-value=0.37 Score=35.58 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=37.1
Q ss_pred ecCCCccccccccc------cccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 362 LRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
+.|||-...+..|. ....|.|.=|.+- ..|+..+ -.||+|.+.+..+++.
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----NTCPTCRKKINHKRYH 67 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCCBCCCCSCC
T ss_pred CCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----CCCCCCCCccChhhee
Confidence 47999999998884 6678999866653 3555432 3899999998877753
No 101
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=86.25 E-value=0.61 Score=32.53 Aligned_cols=44 Identities=23% Similarity=0.561 Sum_probs=29.7
Q ss_pred cCCCccccccc---cccccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCC
Q 014025 363 RCPMSGSRIKV---AGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 363 ~CPls~~ri~~---P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
.|||-+..+.. +.+...|.|.=|.+ +..|+..+ ..||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp SCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred cCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 47777766643 45556799986666 34565543 78999998753
No 102
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.86 E-value=0.66 Score=35.69 Aligned_cols=52 Identities=17% Similarity=0.406 Sum_probs=37.7
Q ss_pred eeecCCCccccccc----cccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCCCCC
Q 014025 360 VNLRCPMSGSRIKV----AGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 360 isL~CPls~~ri~~----P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
-.+.|||-+..+.. |+.. .|.|.-|.+- ..|+... .....||+|.+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASS--INGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHC--SSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcC--CCCcCCCCCCCcccchh
Confidence 34789999999887 6554 7999877653 3455432 34689999999887764
No 103
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=84.92 E-value=0.62 Score=41.78 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=33.7
Q ss_pred cc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 115 rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
.| +|+.. +.++-|+. |..+.|..|+..+-. ..| ...|+|+.|+-..
T Consensus 6 ~C~~C~~~---g~ll~Cd~--C~~~~H~~C~~p~l~---~~p--~~~W~C~~C~~~~ 52 (184)
T 3o36_A 6 WCAVCQNG---GELLCCEK--CPKVFHLSCHVPTLT---NFP--SGEWICTFCRDLS 52 (184)
T ss_dssp SCTTTCCC---SSCEECSS--SSCEECTTTSSSCCS---SCC--SSCCCCTTTSCSS
T ss_pred ccccCCCC---CeeeecCC--CCcccCccccCCCCC---CCC--CCCEECccccCcc
Confidence 45 58743 67999999 999999999875422 222 2479999999743
No 104
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.26 E-value=0.66 Score=38.33 Aligned_cols=45 Identities=29% Similarity=0.718 Sum_probs=32.5
Q ss_pred CCCCC-CCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceee
Q 014025 117 PCGSS-LETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRL 168 (432)
Q Consensus 117 ~Cg~~-~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl 168 (432)
+|+.. ...+.++.|+. |..++|..|+..+ +..+| ...++|+.|+.
T Consensus 66 vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~---l~~~P--~~~W~C~~C~~ 111 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDS--CDRGFHMECCDPP---LTRMP--KGMWICQICRP 111 (112)
T ss_dssp TTCCCCCTTCCCEECTT--TCCEECGGGCSSC---CSSCC--SSCCCCTTTSC
T ss_pred cccCcCCCccceEEcCC--CCCeeecccCCCC---CCCCC--CCCeECCCCCC
Confidence 47754 34568999999 9999999998754 22222 23799999975
No 105
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.25 E-value=0.43 Score=34.08 Aligned_cols=45 Identities=31% Similarity=0.597 Sum_probs=32.1
Q ss_pred ecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCC
Q 014025 362 LRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
|.|||-...+..|+. ..|.|.-|.+--. .....||+|.+.+...+
T Consensus 7 ~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~-------~~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 7 LRCQQCQAEAKCPKL-LPCLHTLCSGCLE-------ASGMQCPICQAPWPLGA 51 (56)
T ss_dssp SSCSSSCSSCBCCSC-STTSCCSBTTTCS-------SSSSSCSSCCSSSSCCS
T ss_pred CCceEeCCccCCeEE-cCCCCcccHHHHc-------cCCCCCCcCCcEeecCC
Confidence 569999999988855 5699976654311 13458999999877544
No 106
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.83 E-value=1 Score=32.49 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=35.1
Q ss_pred ceeeeecCCCccccccccccccCcCccccccH-HHHHHHhcCCCceecCCC
Q 014025 357 SIGVNLRCPMSGSRIKVAGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPIC 406 (432)
Q Consensus 357 ~~~isL~CPls~~ri~~P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC 406 (432)
.+.-.+.|||-...+.-|+.- .|.|.-|.+- ..|++. .....+||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~--~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGET--SCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEEC-TTSSEECHHHHHHHHHH--CSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEe-CCCCcchHHHHHHHHHc--CCCCCcCcCC
Confidence 355678999999999999887 8999977653 344442 3346789998
No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=83.16 E-value=0.64 Score=36.82 Aligned_cols=53 Identities=21% Similarity=0.595 Sum_probs=36.0
Q ss_pred ccc-CCCCCCC--CCCeeeecCCCCCCcccccceecCCCCCC-CCCCCCCcccccceeecc
Q 014025 114 VCC-PCGSSLE--TESMIKCEDPRCPVWQHMSCVIIPEKPTE-GNPPVPELFYCEICRLSR 170 (432)
Q Consensus 114 ~rC-~Cg~~~~--~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~-~~~~~p~~f~C~~Crl~~ 170 (432)
..| +|+.... .+.+|.|+. |...+|..|+..+-.... ..| ...|+|+.|+...
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~~~~~p--~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDKEVNDP--RLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHHHHHCT--TCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCC--CCCeEcCccCCCcccccccCCC--CCCeeCccccchh
Confidence 345 5876543 478999999 999999999986522000 011 2379999998744
No 108
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=83.03 E-value=0.38 Score=39.87 Aligned_cols=51 Identities=18% Similarity=0.331 Sum_probs=37.8
Q ss_pred eecCCCccccccccc------cccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 361 NLRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 361 sL~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
.+.|||-+..++-|+ ....|.|.=|.+ +..||.. .-.||+|.+.+...++.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 64 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-----CSBCTTTCCBCTTTCEE
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-----CCCCCCCCCcCcccccc
Confidence 368999999999884 667899986665 3345532 23999999998877653
No 109
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.97 E-value=0.65 Score=34.69 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=32.3
Q ss_pred eeecCCCccccccccccc--cCcCcccccc-HHHHHHHhcCCCceecCCCCCCCC
Q 014025 360 VNLRCPMSGSRIKVAGRF--KPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 360 isL~CPls~~ri~~P~Rg--~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
....|||-+..+..|..- ..|.|.=|++ +..|+..+ ..||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----KVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----SBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----CcCCCcCcccc
Confidence 345799998888766544 3799986654 34566532 28999998764
No 110
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.54 E-value=1.5 Score=30.79 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=31.7
Q ss_pred eeeecCCCccccccccccccCcCccccccHHHHHHHhc-CCCceecCCC
Q 014025 359 GVNLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQ-RSRKWQCPIC 406 (432)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~-~~~~W~CPiC 406 (432)
.-.+.|||-...++-|+. ..|.|.-|.+ =..+... ......||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC~~--Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHNFCKA--CITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCCCCHH--HHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCccCHH--HHHHHHHhcCCCCCCCCC
Confidence 345789999999999977 5799995554 3333322 2356799998
No 111
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.94 E-value=0.45 Score=36.03 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=33.8
Q ss_pred eeeeecCCCccccccccccccCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 358 IGVNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 358 ~~isL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
+.-.+.|||-+....-|+- ..|.|. -|.+-.. ...+||+|.+.+.
T Consensus 22 ~~~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVF-VPCGHLVTCKQCAE--------AVDKCPMCYTVIT 67 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHH--------HCSBCTTTCCBCC
T ss_pred CCCCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhh--------CCCCCccCCceec
Confidence 3446789999999888876 579998 6665542 1279999998775
No 112
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=79.08 E-value=2.5 Score=32.39 Aligned_cols=52 Identities=19% Similarity=0.437 Sum_probs=34.5
Q ss_pred ecCCCcccccccc-ccccC--cCccccccHHHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 362 LRCPMSGSRIKVA-GRFKP--CVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 362 L~CPls~~ri~~P-~Rg~~--C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
+.|||-...+.++ .+... |.|.=|.+-- ..+.. .....||+|.+.+....+.
T Consensus 12 ~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl--~~~~~-~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPCTCGYQICRFCW--HRIRT-DENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSSTTSCCCCHHHH--HHHTT-SSCSBCTTTCCBCSSCSSC
T ss_pred CcCCccCccCccccccccccCCCCCcCHHHH--HHHHh-cCCCCCCCCCCccCCCchh
Confidence 5699998877653 34433 9998665443 33322 2468999999988776653
No 113
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=78.98 E-value=1.1 Score=32.79 Aligned_cols=47 Identities=26% Similarity=0.461 Sum_probs=31.1
Q ss_pred eecCCCcccccc--ccccccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCC
Q 014025 361 NLRCPMSGSRIK--VAGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (432)
Q Consensus 361 sL~CPls~~ri~--~P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (432)
...|||-+..+. .+++...|.|.-|++ +..|+..+ ..||+|.+.+..
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----KKCPICRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----SBCTTTCSBSCS
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----CCCcCcCccccC
Confidence 346888877764 345566799986655 34455542 369999987653
No 114
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.45 E-value=0.91 Score=41.52 Aligned_cols=46 Identities=26% Similarity=0.663 Sum_probs=33.8
Q ss_pred cc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecc
Q 014025 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSR 170 (432)
Q Consensus 115 rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~ 170 (432)
.| +|+.. +.++-|+. |..+.|..|+..+-. ..| ...|+|+.|+-..
T Consensus 9 ~C~~C~~~---g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 9 WCAVCQNG---GDLLCCEK--CPKVFHLTCHVPTLL---SFP--SGDWICTFCRDIG 55 (207)
T ss_dssp SBTTTCCC---EEEEECSS--SSCEECTTTSSSCCS---SCC--SSCCCCTTTSCSS
T ss_pred CCCCCCCC---CceEEcCC--CCCccCCccCCCCCC---CCC--CCCEEeCceeCcc
Confidence 45 58743 57999999 999999999975422 222 2479999999744
No 115
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=78.09 E-value=2.2 Score=34.81 Aligned_cols=47 Identities=23% Similarity=0.481 Sum_probs=34.7
Q ss_pred ccc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025 114 VCC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (432)
Q Consensus 114 ~rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr 167 (432)
..| +|+.......+|.|.. |....|..|+..+..+. ....|+|+.|+
T Consensus 8 ~~C~~C~~~g~~~~ll~C~~--C~~~~H~~Cl~~~~~~~-----~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLLDQFFCTT--CGQHYHGMCLDIAVTPL-----KRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTTTSEECSS--SCCEECTTTTTCCCCTT-----TSTTCCCTTTC
T ss_pred CCCcCCCCCCCCcCCeECCC--CCCCcChHHhCCccccc-----cccCccCCcCC
Confidence 345 5887765567899998 99999999998764321 12478888876
No 116
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=77.40 E-value=2.2 Score=36.24 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=32.7
Q ss_pred HHHhhcCHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhcc
Q 014025 9 EKLAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILS 46 (432)
Q Consensus 9 ~~l~~fRv~ELk~vl~~lgl~ksG--rK~eL~~Ril~~l~ 46 (432)
+.|...-+.||+.+...+|+.... +|+||+.+||.-+.
T Consensus 4 ~eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~~~ 43 (130)
T 1a62_A 4 TELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHA 43 (130)
T ss_dssp HHHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHH
Confidence 456888999999999999999776 99999999987544
No 117
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=77.17 E-value=2.9 Score=36.88 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=39.7
Q ss_pred ccHHHHHHHHhh-cCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 014025 2 DSVASCKEKLAH-FRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (432)
Q Consensus 2 ~~~~~~~~~l~~-fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~ 48 (432)
+++-.+++.|.. +...||+.+|.+=|...+|-+.+|++|+...+--+
T Consensus 29 ~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~FG 76 (160)
T 2riq_A 29 DLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFG 76 (160)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Confidence 456678999986 99999999999999988999999999987655433
No 118
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=75.96 E-value=1.3 Score=32.47 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=30.1
Q ss_pred cCCCcccccccccc-ccCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 363 RCPMSGSRIKVAGR-FKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 363 ~CPls~~ri~~P~R-g~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
.|++-+.+.+-++= ...|.|+ -|++-..-+.. + .++||+|.+++.
T Consensus 9 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--~--~~~CPiCR~~i~ 55 (63)
T 2vje_B 9 PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK--A--GASCPICKKEIQ 55 (63)
T ss_dssp BCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHH--T--TCBCTTTCCBCC
T ss_pred CCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHH--h--CCcCCCcCchhh
Confidence 57877776655441 2379998 57776654432 2 389999999774
No 119
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=74.08 E-value=0.89 Score=34.34 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=31.9
Q ss_pred eeecCCCccccccccccccCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 360 VNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 360 isL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
-.+.||+-+..+.-|+- ..|.|. -|++-..-+ +.||+|.+.+.
T Consensus 23 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAV--------DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTC--------SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcC--------ccCCCcCcCcc
Confidence 34689999998888775 489998 676653211 89999998765
No 120
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=73.88 E-value=2 Score=34.81 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=33.0
Q ss_pred cCCCccccccccc-----------------cccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCC
Q 014025 363 RCPMSGSRIKVAG-----------------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 363 ~CPls~~ri~~P~-----------------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
.|||-...+..|. +-..|.|.=|++ +..||....+...-.||+|...+.
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 5788877776553 246799975554 456775544455679999997654
No 121
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.58 E-value=2 Score=31.12 Aligned_cols=47 Identities=17% Similarity=0.320 Sum_probs=33.7
Q ss_pred eeecCCCccccccccc------cccCcCccccccH-HHHHHHhcCCCceecCCCCCCCC
Q 014025 360 VNLRCPMSGSRIKVAG------RFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 360 isL~CPls~~ri~~P~------Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
-.+.|||-+..+..|. ....|.|.-|.+- ..|+.. .-.||+|.+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCCccC
Confidence 3467999999998874 4568999866553 345543 348999998765
No 122
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=73.37 E-value=3.6 Score=28.41 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=27.5
Q ss_pred cCCCccccccc---cccccCcCccccccH-HHHHHHhcCCCceecCCCCCCCC
Q 014025 363 RCPMSGSRIKV---AGRFKPCVHMGCFDL-DVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 363 ~CPls~~ri~~---P~Rg~~C~HlQCFDl-~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
.|||-...+.. +.....|.|.=|.+- ..|+. ....||+|.+.+.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCRLTVV 54 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSCCCSC
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCCCEeE
Confidence 47777766655 344345999755553 33432 2458999998764
No 123
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=70.81 E-value=2.2 Score=31.19 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=30.3
Q ss_pred cCCCccccccccccc-cCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 363 RCPMSGSRIKVAGRF-KPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 363 ~CPls~~ri~~P~Rg-~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
.|++-+.+...++-- ..|.|+ -|++-..-+.. ..+.||+|.+++.
T Consensus 10 ~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CPiCR~~i~ 56 (64)
T 2vje_A 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK----RNKPCPVCRQPIQ 56 (64)
T ss_dssp CCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH----TTCCCTTTCCCCC
T ss_pred CCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH----cCCcCCCcCcchh
Confidence 578887777766531 379998 47665543332 2478999999774
No 124
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.74 E-value=1.7 Score=35.82 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=37.5
Q ss_pred ecCCCccccccccc------cccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCCCee
Q 014025 362 LRCPMSGSRIKVAG------RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENII 416 (432)
Q Consensus 362 L~CPls~~ri~~P~------Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ 416 (432)
+.||+-...++-|. ....|.|.-|++ ++.|+.. ...||+|...+..++++
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRKKINHKRYH 129 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-----CSBCTTTCCBCCGGGEE
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-----CCCCCCCCCcCChhcce
Confidence 56888888887763 455799998886 4567753 24999999999887764
No 125
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.68 E-value=2.2 Score=38.48 Aligned_cols=45 Identities=22% Similarity=0.706 Sum_probs=32.5
Q ss_pred cc-CCCCCCCCCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeec
Q 014025 115 CC-PCGSSLETESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLS 169 (432)
Q Consensus 115 rC-~Cg~~~~~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~ 169 (432)
.| +|+.. +.++.|+. |....|..|+..+-+ ..| .+.|+|+.|+..
T Consensus 4 ~C~~C~~~---g~ll~Cd~--C~~~~H~~Cl~p~l~---~~p--~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQKP---GDLVMCNQ--CEFCFHLDCHLPALQ---DVP--GEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCCC---SSCCCCTT--TCCBCCSTTSTTCCS---SCC--CTTCCTTTTSCS
T ss_pred cCccCCCC---CceeECCC--CCchhccccCCCCcc---cCC--CCCCCCcCccCC
Confidence 45 47743 57999999 999999999864322 222 247999999874
No 126
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.40 E-value=0.91 Score=33.45 Aligned_cols=48 Identities=23% Similarity=0.424 Sum_probs=32.7
Q ss_pred eecCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCC
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
.+.|||-...+.. ....|.|.-|. .=....-. ....||+|.+.+...+
T Consensus 15 ~~~C~IC~~~~~~--~~~~CgH~fc~--~Ci~~~~~--~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMDGRAD--LILPCAHSFCQ--KCIDKWSD--RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCCSCCS--EEETTTEEECH--HHHHHSSC--CCSSCHHHHHCTTCCC
T ss_pred CCCCeeCCcCccC--cccCCCCcccH--HHHHHHHH--CcCcCCCcCCcccCCC
Confidence 5679998888766 56779998443 33332222 4678999998877554
No 127
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.52 E-value=2.8 Score=32.04 Aligned_cols=32 Identities=25% Similarity=0.630 Sum_probs=20.5
Q ss_pred CcCcccccc-HHHHHHHhcCCCceecCCCCCCCCCCCe
Q 014025 379 PCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSLENI 415 (432)
Q Consensus 379 ~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~~~L 415 (432)
.|.|.=+++ +..||..+ -.||+|.+.+.+.++
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~~~~ 79 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN-----NRCPLCQQDWVVQRI 79 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC-----CBCTTTCCBCCEEEE
T ss_pred CCCCccChHHHHHHHHhC-----CCCCCcCCCcchhhc
Confidence 599974433 34455432 289999998876543
No 128
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=67.50 E-value=6.7 Score=37.63 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 014025 4 VASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (432)
Q Consensus 4 ~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~ 48 (432)
++.+-.+++.+.+.||...|..+||+..|.|..|..|+..+.+..
T Consensus 19 ~~~~~~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~ 63 (299)
T 1zbh_A 19 IAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 63 (299)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHhhchhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 456677888999999999999999999999999999999887664
No 129
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=65.23 E-value=2 Score=33.69 Aligned_cols=47 Identities=19% Similarity=0.450 Sum_probs=29.4
Q ss_pred eecCCCccccccc--cccccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCC
Q 014025 361 NLRCPMSGSRIKV--AGRFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (432)
Q Consensus 361 sL~CPls~~ri~~--P~Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (432)
...|||-...+.. +++...|.|.=|++ +..||.. .-.||+|.+.+.+
T Consensus 40 ~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----SGTCPVCRCMFPP 89 (91)
T ss_dssp CSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----TCBCTTTCCBSSC
T ss_pred CCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----CCcCcCcCccCCC
Confidence 3468888766643 23445699975554 3445532 2389999988754
No 130
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.54 E-value=0.68 Score=38.25 Aligned_cols=40 Identities=28% Similarity=0.504 Sum_probs=27.8
Q ss_pred CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (432)
Q Consensus 124 ~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr 167 (432)
.+.+|.|.. |....|..|++...+..+.+ ....|+|+.|+
T Consensus 23 ~~~Ll~C~~--C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C~ 62 (112)
T 3v43_A 23 PEELISCAD--CGNSGHPSCLKFSPELTVRV--KALRWQCIECK 62 (112)
T ss_dssp CCCCEECTT--TCCEECHHHHTCCHHHHHHH--HTSCCCCTTTC
T ss_pred chhceEhhh--cCCCCCCchhcCCHHHHHHh--hccccccccCC
Confidence 468999999 99999999997631110011 12368888887
No 131
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=63.78 E-value=11 Score=31.44 Aligned_cols=38 Identities=29% Similarity=0.479 Sum_probs=34.1
Q ss_pred HHHHhhcCHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhc
Q 014025 8 KEKLAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAIL 45 (432)
Q Consensus 8 ~~~l~~fRv~ELk~vl~~lgl~ksG--rK~eL~~Ril~~l 45 (432)
++.|+.+++++|++-|..-+++..| .|.||++=||.-.
T Consensus 73 ~~~l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl~~~ 112 (120)
T 1y02_A 73 REELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQ 112 (120)
T ss_dssp HHHHHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHHHTC
T ss_pred HHHHhcccHHHHHHHHHhCCCCcccceeHHHHHHHHHhcC
Confidence 5678999999999999999999888 7999999888766
No 132
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=62.97 E-value=2.2 Score=32.80 Aligned_cols=10 Identities=50% Similarity=1.630 Sum_probs=8.9
Q ss_pred CCceecCCCC
Q 014025 398 SRKWQCPICL 407 (432)
Q Consensus 398 ~~~W~CPiC~ 407 (432)
..+|.||||.
T Consensus 15 ~~tWVCpICs 24 (76)
T 2j9u_B 15 VSTWVCPICM 24 (76)
T ss_dssp CEEEECTTTC
T ss_pred ccceECcccc
Confidence 4689999998
No 133
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=62.12 E-value=2.2 Score=32.71 Aligned_cols=41 Identities=20% Similarity=0.409 Sum_probs=29.3
Q ss_pred ecCCCccccccccccccCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 362 LRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
+.|++-+....-|+- ..|.|. -|++-.. .-|.||+|...+.
T Consensus 19 ~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~--------~~~~CP~Cr~~i~ 60 (79)
T 2yho_A 19 MLCMVCCEEEINSTF-CPCGHTVCCESCAA--------QLQSCPVCRSRVE 60 (79)
T ss_dssp TBCTTTSSSBCCEEE-ETTCBCCBCHHHHT--------TCSBCTTTCCBCC
T ss_pred CEeEEeCcccCcEEE-ECCCCHHHHHHHHH--------hcCcCCCCCchhh
Confidence 468888887776654 479998 5665443 2379999998765
No 134
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=58.90 E-value=2.7 Score=29.22 Aligned_cols=12 Identities=33% Similarity=1.127 Sum_probs=9.5
Q ss_pred CCceecCCCCCC
Q 014025 398 SRKWQCPICLRN 409 (432)
Q Consensus 398 ~~~W~CPiC~k~ 409 (432)
...|.||+|+..
T Consensus 28 P~dw~CP~Cg~~ 39 (46)
T 6rxn_A 28 PDDWCCPVCGVS 39 (46)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999864
No 135
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.48 E-value=5.7 Score=29.39 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=27.4
Q ss_pred ecCCCccccccccccccCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 362 LRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 362 L~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
..|++-+.+...+ -...|.|+ -|.+-.. ..++||+|...+.
T Consensus 16 ~~C~IC~~~~~~~-v~~pCgH~~~C~~C~~--------~~~~CP~CR~~i~ 57 (68)
T 2ea5_A 16 KDCVVCQNGTVNW-VLLPCRHTCLCDGCVK--------YFQQCPMCRQFVQ 57 (68)
T ss_dssp SCCSSSSSSCCCC-EETTTTBCCSCTTHHH--------HCSSCTTTCCCCC
T ss_pred CCCCCcCcCCCCE-EEECCCChhhhHHHHh--------cCCCCCCCCcchh
Confidence 4588777665442 23568888 5666544 1389999998765
No 136
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=56.30 E-value=6.2 Score=33.39 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=26.6
Q ss_pred HhhcCHHHHHHHHHHhCCC--CCCChHHHHHHH
Q 014025 11 LAHFRIKELKDVLTQLGLS--KQGKKQDLVDRI 41 (432)
Q Consensus 11 l~~fRv~ELk~vl~~lgl~--ksGrK~eL~~Ri 41 (432)
|..+.|.|||..|..+|.. ++-+|.||++=+
T Consensus 89 l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL 121 (131)
T 2out_A 89 LNTFTVEQLKAQLTERGITFKQSATKAELIALF 121 (131)
T ss_dssp STTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHC
T ss_pred cccccHHHHHHHHHHcCCcccccCCHHHHHHHH
Confidence 4577999999999999997 889999997643
No 137
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=53.65 E-value=3.4 Score=40.92 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=33.6
Q ss_pred eeeecCCCccccccccccccCcCcc-ccccHHHHHHHhcCCCceecCCCCCCCC
Q 014025 359 GVNLRCPMSGSRIKVAGRFKPCVHM-GCFDLDVFVELNQRSRKWQCPICLRNYS 411 (432)
Q Consensus 359 ~isL~CPls~~ri~~P~Rg~~C~Hl-QCFDl~~fL~~n~~~~~W~CPiC~k~~~ 411 (432)
.-.+.||+-...+.-|+.- .|.|. =|.+-..-+ +.||+|...+.
T Consensus 293 ~~~~~C~IC~~~~~~~v~l-pCgH~~fC~~C~~~~--------~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFI-PCGHLVVCQECAPSL--------RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEE-TTCCEEECTTTGGGC--------SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCceEEc-CCCChhHhHHHHhcC--------CcCCCCCCCcc
Confidence 3458999999999888775 89998 666553311 79999998765
No 138
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.84 E-value=4.6 Score=29.02 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.6
Q ss_pred CCceecCCCCCC
Q 014025 398 SRKWQCPICLRN 409 (432)
Q Consensus 398 ~~~W~CPiC~k~ 409 (432)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (54)
T 4rxn_A 34 PDDWVCPLCGVG 45 (54)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCcCCCCc
Confidence 457999999864
No 139
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=49.43 E-value=5.4 Score=28.35 Aligned_cols=12 Identities=33% Similarity=1.226 Sum_probs=9.6
Q ss_pred CCceecCCCCCC
Q 014025 398 SRKWQCPICLRN 409 (432)
Q Consensus 398 ~~~W~CPiC~k~ 409 (432)
...|.||+|+..
T Consensus 34 P~dw~CP~Cg~~ 45 (52)
T 1e8j_A 34 PDDWACPVCGAS 45 (52)
T ss_dssp CTTCCCSSSCCC
T ss_pred CCCCcCCCCCCc
Confidence 457999999864
No 140
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=48.94 E-value=5.4 Score=28.72 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.7
Q ss_pred CCceecCCCCCC
Q 014025 398 SRKWQCPICLRN 409 (432)
Q Consensus 398 ~~~W~CPiC~k~ 409 (432)
...|.||+|+..
T Consensus 34 P~dw~CP~Cga~ 45 (55)
T 2v3b_B 34 PADWVCPDCGVG 45 (55)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 141
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=48.65 E-value=2 Score=31.49 Aligned_cols=13 Identities=31% Similarity=1.109 Sum_probs=10.4
Q ss_pred cCCCceecCCCCC
Q 014025 396 QRSRKWQCPICLR 408 (432)
Q Consensus 396 ~~~~~W~CPiC~k 408 (432)
....+|.||+|..
T Consensus 29 ~~~~~W~C~~C~~ 41 (59)
T 2yrc_A 29 YRAKLWACNFCYQ 41 (59)
T ss_dssp GGGTEEECSSSCC
T ss_pred CCCCEEEcccCCC
Confidence 4457899999975
No 142
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=48.03 E-value=5.1 Score=28.48 Aligned_cols=13 Identities=31% Similarity=0.989 Sum_probs=10.0
Q ss_pred CCCceecCCCCCC
Q 014025 397 RSRKWQCPICLRN 409 (432)
Q Consensus 397 ~~~~W~CPiC~k~ 409 (432)
-...|.||+|+..
T Consensus 32 lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 32 LPDDWVCPLCGAP 44 (52)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCCCCCCC
Confidence 3457999999864
No 143
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=46.62 E-value=2.2 Score=33.20 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.6
Q ss_pred eecCCCCCCCCCCCee
Q 014025 401 WQCPICLRNYSLENII 416 (432)
Q Consensus 401 W~CPiC~k~~~~~~L~ 416 (432)
-+||+|++++..++|+
T Consensus 9 ~~~PlCG~~L~W~eLI 24 (95)
T 2k5c_A 9 AKCPICGSPLKWEELI 24 (95)
T ss_dssp EECSSSCCEECHHHHH
T ss_pred ccCCcCCCccCHHHHH
Confidence 5899999999887764
No 144
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=45.45 E-value=9.1 Score=38.45 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=35.9
Q ss_pred eecCCCccccccccccccCcCccccccHH-HHHHHhcCCCceecCCCCCCCCCCC
Q 014025 361 NLRCPMSGSRIKVAGRFKPCVHMGCFDLD-VFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 361 sL~CPls~~ri~~P~Rg~~C~HlQCFDl~-~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
.+.|||-...+.-|+. ..|.|.=|.+-- .|+.. ..-.||+|...+....
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~----~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQES----EGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHH----TCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhc----CCCCCCCCCCccCCce
Confidence 3689999999988866 589998776643 45442 2348999999887654
No 145
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=45.41 E-value=6.6 Score=24.35 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.8
Q ss_pred CCceecCCCCCCCC
Q 014025 398 SRKWQCPICLRNYS 411 (432)
Q Consensus 398 ~~~W~CPiC~k~~~ 411 (432)
.+++.||+|...++
T Consensus 1 ~~k~~CpvCk~q~P 14 (28)
T 2jvx_A 1 SSDFCCPKCQYQAP 14 (28)
T ss_dssp CCCEECTTSSCEES
T ss_pred CCcccCccccccCc
Confidence 36799999987553
No 146
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=45.38 E-value=8.6 Score=29.97 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=37.6
Q ss_pred ecCCCccccccccccc--cCcCcccccc-HHHHHHHh--cC-CCceecCC--CCCC--CCCCC
Q 014025 362 LRCPMSGSRIKVAGRF--KPCVHMGCFD-LDVFVELN--QR-SRKWQCPI--CLRN--YSLEN 414 (432)
Q Consensus 362 L~CPls~~ri~~P~Rg--~~C~HlQCFD-l~~fL~~n--~~-~~~W~CPi--C~k~--~~~~~ 414 (432)
+.|||-+..+..|.-. ..|.|.=|.+ +..|+... +. ....+||. |... +.+++
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 4699998887777543 3699998876 56677753 32 24689999 9988 65544
No 147
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=44.98 E-value=6.6 Score=30.62 Aligned_cols=12 Identities=33% Similarity=1.013 Sum_probs=9.4
Q ss_pred CCceecCCCCCC
Q 014025 398 SRKWQCPICLRN 409 (432)
Q Consensus 398 ~~~W~CPiC~k~ 409 (432)
...|.||+|+..
T Consensus 58 PddW~CPvCga~ 69 (81)
T 2kn9_A 58 PDDWSCPDCGAA 69 (81)
T ss_dssp CTTCCCTTTCCC
T ss_pred CCCCcCCCCCCC
Confidence 347999999864
No 148
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=44.11 E-value=6.4 Score=29.78 Aligned_cols=12 Identities=33% Similarity=0.863 Sum_probs=9.6
Q ss_pred CCceecCCCCCC
Q 014025 398 SRKWQCPICLRN 409 (432)
Q Consensus 398 ~~~W~CPiC~k~ 409 (432)
...|.||+|+..
T Consensus 38 Pddw~CP~Cga~ 49 (70)
T 1dx8_A 38 SDSFMCPACRSP 49 (70)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 457999999864
No 149
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=43.85 E-value=2.6 Score=36.83 Aligned_cols=38 Identities=32% Similarity=0.579 Sum_probs=25.1
Q ss_pred HhhcCHHHHHHHHHHhCCCCCC--ChHHHHHHHHHhcccc
Q 014025 11 LAHFRIKELKDVLTQLGLSKQG--KKQDLVDRILAILSDD 48 (432)
Q Consensus 11 l~~fRv~ELk~vl~~lgl~ksG--rK~eL~~Ril~~l~~~ 48 (432)
|..+||+|||.+|..-|..=-| -|.|.+.||.++-.-.
T Consensus 108 l~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~el~pk~ 147 (158)
T 2w51_A 108 LKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELMPKY 147 (158)
T ss_dssp CCTTHHHHHHHHTTCCCTTCSSCHHHHTTC----------
T ss_pred hhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhcccc
Confidence 4679999999999999999888 4889999998876543
No 150
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=43.14 E-value=13 Score=30.13 Aligned_cols=45 Identities=36% Similarity=0.665 Sum_probs=33.4
Q ss_pred cCCCccccccccccccCcCccccccHHHHHHHhcCCCceecCCCCCCC
Q 014025 363 RCPMSGSRIKVAGRFKPCVHMGCFDLDVFVELNQRSRKWQCPICLRNY 410 (432)
Q Consensus 363 ~CPls~~ri~~P~Rg~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~ 410 (432)
-||.-...|++=+|-..|+|.=|+|-..-... ...=.||.|+.++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~---~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEK---KGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHH---TTCCBCTTTCCBC
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHh---ccCCCCcCcCCee
Confidence 37777788889899999999989887653322 2234799998755
No 151
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=39.48 E-value=9.2 Score=30.18 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.0
Q ss_pred CCCceecCCCCCC
Q 014025 397 RSRKWQCPICLRN 409 (432)
Q Consensus 397 ~~~~W~CPiC~k~ 409 (432)
-...|.||+|+..
T Consensus 65 lPddW~CPvCga~ 77 (87)
T 1s24_A 65 IPDDWCCPDCGAT 77 (87)
T ss_dssp CCTTCCCSSSCCC
T ss_pred CCCCCCCCCCCCC
Confidence 3457999999864
No 152
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=33.38 E-value=48 Score=24.82 Aligned_cols=42 Identities=21% Similarity=0.578 Sum_probs=26.3
Q ss_pred CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCcccccceeecccCcchh
Q 014025 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICRLSRADPFWV 176 (432)
Q Consensus 124 ~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Crl~~~dPF~~ 176 (432)
....|||+.+.|.+|--..= .+. + ..+|..++|-+ ..||.+.
T Consensus 15 ~~~WVQCd~p~C~KWR~LP~-~~~--~----~~lpd~W~C~m----N~d~~~~ 56 (69)
T 2e61_A 15 CLVWVQCSFPNCGKWRRLCG-NID--P----SVLPDNWSCDQ----NTDVQYN 56 (69)
T ss_dssp CCCEEECSSTTTCCEEECCS-SCC--T----TTSCTTCCGGG----CSCGGGC
T ss_pred CCeEEEeCccccCcccCCcc-ccc--c----ccCCCcCEeCC----CCCCccC
Confidence 36799999666999976631 111 1 12577898864 4466654
No 153
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.93 E-value=12 Score=30.66 Aligned_cols=40 Identities=25% Similarity=0.526 Sum_probs=27.1
Q ss_pred CCCeeeecCCCCCCcccccceecCCCCCCCCCCCCCccccccee
Q 014025 124 TESMIKCEDPRCPVWQHMSCVIIPEKPTEGNPPVPELFYCEICR 167 (432)
Q Consensus 124 ~~~~i~C~~~~C~~~qH~~Cv~~~~k~~~~~~~~p~~f~C~~Cr 167 (432)
.+.+|.|.. |....|..|+..+...++.+ ....|+|+.|+
T Consensus 20 ~~~Li~C~~--C~~~~H~~Cl~~~~~~~~~~--~~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCAD--CGRSGHPTCLQFTLNMTEAV--KTYKWQCIECK 59 (114)
T ss_dssp CCCCEECSS--SCCEECTTTTTCCHHHHHHH--HHTTCCCGGGC
T ss_pred CCCCeEeCC--CCCccchhhCCChhhhhhcc--CCCccCccccC
Confidence 468999999 99999999998652110000 02367888774
No 154
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.44 E-value=31 Score=26.16 Aligned_cols=43 Identities=23% Similarity=0.396 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhccccc
Q 014025 3 SVASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQ 49 (432)
Q Consensus 3 ~~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~ 49 (432)
++.+..++++.=+|.-|.+|...+|++ .+|.++||.+|.....
T Consensus 8 ll~~Fi~yIk~~Kvv~LedLA~~F~l~----t~~~i~RI~~Le~~g~ 50 (72)
T 1wi9_A 8 FLTEFINYIKKSKVVLLEDLAFQMGLR----TQDAINRIQDLLTEGT 50 (72)
T ss_dssp HHHHHHHHHHHCSEECHHHHHHHHCSC----HHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCeeeHHHHHHHhCCC----hHHHHHHHHHHHHCCC
Confidence 677888999999999999999999995 6899999999988764
No 155
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.40 E-value=27 Score=19.12 Aligned_cols=13 Identities=23% Similarity=0.876 Sum_probs=10.2
Q ss_pred ceecCCCCCCCCC
Q 014025 400 KWQCPICLRNYSL 412 (432)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (432)
.+.|+.|++....
T Consensus 2 ~~~C~~C~~~f~~ 14 (29)
T 2m0e_A 2 EHKCPHCDKKFNQ 14 (29)
T ss_dssp CCCCSSCCCCCCT
T ss_pred CCcCCCCCcccCC
Confidence 4789999987653
No 156
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=29.00 E-value=52 Score=33.26 Aligned_cols=39 Identities=28% Similarity=0.487 Sum_probs=33.3
Q ss_pred HHHhhcCHHHHHHHHHHhCCC--CCCChHHHHHHHHHhccc
Q 014025 9 EKLAHFRIKELKDVLTQLGLS--KQGKKQDLVDRILAILSD 47 (432)
Q Consensus 9 ~~l~~fRv~ELk~vl~~lgl~--ksGrK~eL~~Ril~~l~~ 47 (432)
+.|+...+.||..+.+.+|+. ..=||+||+..|+.....
T Consensus 11 ~~l~~~~~~~l~~~a~~~~~~~~~~~~k~~l~~~~~~~~~~ 51 (427)
T 3l0o_A 11 SELESMNIKQLYEIAKSLGIPRYTSMRKRDLIFAILKAQTE 51 (427)
T ss_dssp HHHHHSCHHHHHHHHHHTTCTTGGGSCHHHHHHHHHHGGGS
T ss_pred HHHhcCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHh
Confidence 567889999999999999998 466999999999886443
No 157
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=28.92 E-value=32 Score=27.72 Aligned_cols=32 Identities=19% Similarity=0.504 Sum_probs=18.9
Q ss_pred cccCcCcccccc-HHHHHHHhcCCCceecCCCCCCCCC
Q 014025 376 RFKPCVHMGCFD-LDVFVELNQRSRKWQCPICLRNYSL 412 (432)
Q Consensus 376 Rg~~C~HlQCFD-l~~fL~~n~~~~~W~CPiC~k~~~~ 412 (432)
+-..|.|.=+.+ +..||.. .-.||+|.+...+
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~-----~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKT-----RQVCPLDNREWEF 101 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTT-----CSBCSSSCSBCCE
T ss_pred eecccCcEECHHHHHHHHHc-----CCcCcCCCCccee
Confidence 335688863332 2334432 3479999987654
No 158
>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2
Probab=28.84 E-value=21 Score=29.62 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=18.3
Q ss_pred cHHHHHHHhcCCCceecCCC
Q 014025 387 DLDVFVELNQRSRKWQCPIC 406 (432)
Q Consensus 387 Dl~~fL~~n~~~~~W~CPiC 406 (432)
+|..||.+.-+++.|-|||=
T Consensus 46 qLr~fLklAl~TPvWlnPI~ 65 (137)
T 1jvr_A 46 QLRRFLKLALKTPIWLNPID 65 (137)
T ss_dssp HHHHHHHHHHTCTTSTTTTC
T ss_pred HHHHHHHHHhcCcccccchh
Confidence 58899999999999999984
No 159
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=28.31 E-value=1.4e+02 Score=23.51 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccccccccccCCCCCcHHHHHHHHHHHHHhcccCC
Q 014025 14 FRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDDQVSKMWAKKSPVSKEEVAKLVDDTHRKLQVSV 80 (432)
Q Consensus 14 fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~~~~ 80 (432)
+-..||+.+|+.+|++ .+-+++|......... ..+..++....+..++..+++..
T Consensus 31 Is~~el~~~l~~~gl~-----~~el~~i~~~~D~d~d-------G~id~~EF~~~m~~~~~~~~g~~ 85 (106)
T 1eh2_A 31 LSGDKVKPVLLNSKLP-----VDILGRVWELSDIDHD-------GMLDRDEFAVAMFLVYCALEKEP 85 (106)
T ss_dssp CBHHHHHHHHHTTTCC-----HHHHHHHHHHHCSSCS-------SBCCHHHHHHHHHHHHHHHHTCC
T ss_pred EcHHHHHHHHHHcCCC-----HHHHHHHHHHHcCCCC-------CcCcHHHHHHHHHHHHHHHcCCC
Confidence 3468999999998865 3445667766544322 23556666666777887776644
No 160
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.13 E-value=7.3 Score=25.26 Aligned_cols=13 Identities=23% Similarity=0.871 Sum_probs=10.1
Q ss_pred ceecCCCCCCCCC
Q 014025 400 KWQCPICLRNYSL 412 (432)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (432)
-+.||+|.+.+.=
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 3789999987653
No 161
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=26.42 E-value=25 Score=21.02 Aligned_cols=13 Identities=46% Similarity=1.129 Sum_probs=10.6
Q ss_pred CceecCCCCCCCC
Q 014025 399 RKWQCPICLRNYS 411 (432)
Q Consensus 399 ~~W~CPiC~k~~~ 411 (432)
..++|++|++...
T Consensus 10 k~~~C~~C~k~f~ 22 (37)
T 1p7a_A 10 KPFQCPDCDRSFS 22 (37)
T ss_dssp SSBCCTTTCCCBS
T ss_pred CCccCCCCCcccC
Confidence 4699999998765
No 162
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=26.35 E-value=22 Score=21.49 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=9.9
Q ss_pred ceecCCCCCCCCC
Q 014025 400 KWQCPICLRNYSL 412 (432)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (432)
+-+||+|.+-++-
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 4689999986654
No 163
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.17 E-value=25 Score=19.29 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=10.2
Q ss_pred CceecCCCCCCCC
Q 014025 399 RKWQCPICLRNYS 411 (432)
Q Consensus 399 ~~W~CPiC~k~~~ 411 (432)
..|.|++|++...
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 3589999998654
No 164
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.89 E-value=28 Score=19.19 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=10.2
Q ss_pred ceecCCCCCCCCC
Q 014025 400 KWQCPICLRNYSL 412 (432)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (432)
.+.|++|++...-
T Consensus 2 ~~~C~~C~k~f~~ 14 (30)
T 1klr_A 2 TYQCQYCEFRSAD 14 (30)
T ss_dssp CCCCSSSSCCCSC
T ss_pred CccCCCCCCccCC
Confidence 4799999987653
No 165
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.85 E-value=26 Score=19.35 Aligned_cols=12 Identities=25% Similarity=1.030 Sum_probs=9.7
Q ss_pred ceecCCCCCCCC
Q 014025 400 KWQCPICLRNYS 411 (432)
Q Consensus 400 ~W~CPiC~k~~~ 411 (432)
.+.|++|++...
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 479999998764
No 166
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.52 E-value=26 Score=21.08 Aligned_cols=15 Identities=7% Similarity=0.275 Sum_probs=12.9
Q ss_pred cHHHHHHHHHhhccC
Q 014025 418 DPYFNRITSKVLFFS 432 (432)
Q Consensus 418 D~y~~~Il~~~~~~~ 432 (432)
+.|+.++|+.|++|+
T Consensus 1 ~nfMkDvlql~qQy~ 15 (26)
T 1kdl_A 1 DNFMKDVLRLIEQYV 15 (26)
T ss_dssp CTHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHH
Confidence 358999999999985
No 167
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.76 E-value=21 Score=26.85 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=13.0
Q ss_pred cCCCceecCCCCCCCCC
Q 014025 396 QRSRKWQCPICLRNYSL 412 (432)
Q Consensus 396 ~~~~~W~CPiC~k~~~~ 412 (432)
...++=.||+|++++..
T Consensus 5 ~~~~~~~CP~Cgkp~~W 21 (68)
T 1lv3_A 5 SETITVNCPTCGKTVVW 21 (68)
T ss_dssp CCCCEEECTTTCCEEEC
T ss_pred CCCCcCcCCCCCCcccc
Confidence 34577899999998753
No 168
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=24.73 E-value=16 Score=27.94 Aligned_cols=29 Identities=10% Similarity=0.231 Sum_probs=17.1
Q ss_pred ccHHHHHHHHhhcCHHH---HHHHHHHhCCCC
Q 014025 2 DSVASCKEKLAHFRIKE---LKDVLTQLGLSK 30 (432)
Q Consensus 2 ~~~~~~~~~l~~fRv~E---Lk~vl~~lgl~k 30 (432)
|+.+.+++.+..|...| +++|.+.||++|
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK 43 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINK 43 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCH
Confidence 34445556666666655 666666666664
No 169
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.10 E-value=27 Score=20.63 Aligned_cols=13 Identities=15% Similarity=0.756 Sum_probs=10.6
Q ss_pred CceecCCCCCCCC
Q 014025 399 RKWQCPICLRNYS 411 (432)
Q Consensus 399 ~~W~CPiC~k~~~ 411 (432)
..+.|++|++.+.
T Consensus 8 ~~~~C~~C~k~f~ 20 (36)
T 2elr_A 8 KTHLCDMCGKKFK 20 (36)
T ss_dssp SSCBCTTTCCBCS
T ss_pred CCeecCcCCCCcC
Confidence 4699999998764
No 170
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.78 E-value=51 Score=25.05 Aligned_cols=39 Identities=15% Similarity=0.442 Sum_probs=25.9
Q ss_pred ccccccc---cCcCccccccHHHHHHHhcCCCceecCCCCCCCCCCC
Q 014025 371 IKVAGRF---KPCVHMGCFDLDVFVELNQRSRKWQCPICLRNYSLEN 414 (432)
Q Consensus 371 i~~P~Rg---~~C~HlQCFDl~~fL~~n~~~~~W~CPiC~k~~~~~~ 414 (432)
+..|++- .+--|..|. +.||..+ .+..||+|...+.++.
T Consensus 31 l~~pC~C~Gs~h~fH~~Cl--~~Wl~~~---~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 31 LITPCHCTGSLHFVHQACL--QQWIKSS---DTRCCELCKYEFIMET 72 (80)
T ss_dssp EECSSSCCSSSCCEETTHH--HHHHHHH---CCSBCSSSCCBCCCCC
T ss_pred eEeccccCCcCCeeCHHHH--HHHHhhC---CCCCCCCCCCeeecCc
Confidence 4467653 355677775 4677654 3479999998876543
No 171
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=22.90 E-value=30 Score=18.76 Aligned_cols=11 Identities=27% Similarity=1.111 Sum_probs=9.1
Q ss_pred eecCCCCCCCC
Q 014025 401 WQCPICLRNYS 411 (432)
Q Consensus 401 W~CPiC~k~~~ 411 (432)
++|++|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 68999998764
No 172
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=22.88 E-value=18 Score=35.63 Aligned_cols=45 Identities=20% Similarity=0.305 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHhCCCCCCChHHHHHHHHHhcccc
Q 014025 4 VASCKEKLAHFRIKELKDVLTQLGLSKQGKKQDLVDRILAILSDD 48 (432)
Q Consensus 4 ~~~~~~~l~~fRv~ELk~vl~~lgl~ksGrK~eL~~Ril~~l~~~ 48 (432)
++..-.+++.+.+.||+.-|..++|..+|+|..|..|+..+....
T Consensus 69 ~~~~~~~i~~~~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~~~ 113 (349)
T 1zbu_A 69 IAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 113 (349)
T ss_dssp ---------------------------------------------
T ss_pred HHHhhcccccCCHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhc
Confidence 345566888888999999999999999999999998887665543
No 173
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=22.68 E-value=36 Score=27.44 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=12.7
Q ss_pred CceecCCCCCCCCCCC
Q 014025 399 RKWQCPICLRNYSLEN 414 (432)
Q Consensus 399 ~~W~CPiC~k~~~~~~ 414 (432)
|-|.||+|.++...++
T Consensus 2 ~~~~C~iC~~p~~~~~ 17 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQ 17 (105)
T ss_dssp CCCBCTTTCSBCCTTS
T ss_pred CcCCCCCCCCccCCCC
Confidence 5799999999875543
No 174
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=22.57 E-value=28 Score=29.91 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=0.0
Q ss_pred cccccc----HHHHHHHhcCCCceecCCCCCCCCCCCeeecHHHHHHHHHhhc
Q 014025 382 HMGCFD----LDVFVELNQRSRKWQCPICLRNYSLENIIIDPYFNRITSKVLF 430 (432)
Q Consensus 382 HlQCFD----l~~fL~~n~~~~~W~CPiC~k~~~~~~L~ID~y~~~Il~~~~~ 430 (432)
|+.|-+ -+..=++......|.||.|.-.-...-+.+-..+.+.++.+.+
T Consensus 86 h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~~~~~~~ 138 (142)
T 2lbm_A 86 CKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFENLEQLLQ 138 (142)
T ss_dssp EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred eHhhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHHHHHHHh
No 175
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.53 E-value=23 Score=32.08 Aligned_cols=12 Identities=42% Similarity=0.886 Sum_probs=9.3
Q ss_pred CceecCCCCCCC
Q 014025 399 RKWQCPICLRNY 410 (432)
Q Consensus 399 ~~W~CPiC~k~~ 410 (432)
+.|.||+|+.+-
T Consensus 185 ~p~~CP~C~~~k 196 (202)
T 1yuz_A 185 DFEKCPICFRPK 196 (202)
T ss_dssp CCSBCTTTCCBG
T ss_pred CCCCCCCCCCCh
Confidence 349999998653
No 176
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=27.59 E-value=19 Score=19.65 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=10.0
Q ss_pred ceecCCCCCCCCC
Q 014025 400 KWQCPICLRNYSL 412 (432)
Q Consensus 400 ~W~CPiC~k~~~~ 412 (432)
.+.|++|++...-
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 4789999986643
No 177
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=21.77 E-value=32 Score=21.25 Aligned_cols=11 Identities=36% Similarity=0.918 Sum_probs=8.8
Q ss_pred CCceecCCCCC
Q 014025 398 SRKWQCPICLR 408 (432)
Q Consensus 398 ~~~W~CPiC~k 408 (432)
.+.|.||.|.-
T Consensus 4 ~~~W~C~~CTf 14 (31)
T 1nj3_A 4 SAMWACQHCTF 14 (31)
T ss_dssp SCCEECSSSCC
T ss_pred CccccCCcccc
Confidence 46899999973
No 178
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.56 E-value=36 Score=18.67 Aligned_cols=12 Identities=25% Similarity=1.002 Sum_probs=9.7
Q ss_pred ceecCCCCCCCC
Q 014025 400 KWQCPICLRNYS 411 (432)
Q Consensus 400 ~W~CPiC~k~~~ 411 (432)
.+.|++|++...
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 589999998654
No 179
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.69 E-value=36 Score=18.59 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=9.4
Q ss_pred ceecCCCCCCCC
Q 014025 400 KWQCPICLRNYS 411 (432)
Q Consensus 400 ~W~CPiC~k~~~ 411 (432)
.+.|++|++...
T Consensus 2 ~~~C~~C~k~f~ 13 (29)
T 2m0f_A 2 PLKCRECGKQFT 13 (29)
T ss_dssp CEECTTTSCEES
T ss_pred CccCCCCCCccC
Confidence 489999998653
No 180
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.10 E-value=39 Score=19.65 Aligned_cols=13 Identities=23% Similarity=0.999 Sum_probs=10.4
Q ss_pred CceecCCCCCCCC
Q 014025 399 RKWQCPICLRNYS 411 (432)
Q Consensus 399 ~~W~CPiC~k~~~ 411 (432)
..+.|++|++...
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 2elx_A 6 SGYVCALCLKKFV 18 (35)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCcchhC
Confidence 4699999998654
Done!