Query 014027
Match_columns 432
No_of_seqs 216 out of 2186
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 01:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 9.7E-53 2.1E-57 392.4 27.4 355 51-428 57-440 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 2.2E-46 4.8E-51 349.8 27.6 333 43-395 104-464 (476)
3 KOG1427 Uncharacterized conser 100.0 8E-42 1.7E-46 299.6 18.3 325 46-396 61-399 (443)
4 KOG1427 Uncharacterized conser 100.0 2.2E-40 4.7E-45 290.6 18.2 337 61-428 19-376 (443)
5 KOG0783 Uncharacterized conser 99.9 3.4E-27 7.5E-32 231.4 15.1 305 56-397 136-450 (1267)
6 KOG1428 Inhibitor of type V ad 99.9 6.5E-26 1.4E-30 230.2 22.1 315 40-380 522-884 (3738)
7 KOG0783 Uncharacterized conser 99.9 4.6E-26 1E-30 223.5 14.4 275 108-406 136-417 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 3.3E-23 7.2E-28 210.8 23.3 342 42-428 478-869 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 2E-12 4.4E-17 87.7 4.4 50 277-326 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.2 6.5E-12 1.4E-16 85.2 4.2 50 61-110 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 5.1E-11 1.1E-15 70.3 3.9 30 261-290 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.0 2.8E-10 6.2E-15 67.1 4.1 30 375-409 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 1.1E-11 2.5E-16 124.3 -5.3 136 258-408 13-156 (850)
14 KOG0941 E3 ubiquitin protein l 99.0 8.9E-12 1.9E-16 125.0 -7.7 188 85-280 4-199 (850)
15 KOG3669 Uncharacterized conser 95.9 2.1 4.6E-05 42.9 20.7 69 44-119 228-299 (705)
16 PF11725 AvrE: Pathogenicity f 95.6 0.17 3.8E-06 56.3 12.9 246 96-402 490-769 (1774)
17 KOG0315 G-protein beta subunit 95.4 2 4.3E-05 38.6 20.4 145 55-230 45-195 (311)
18 KOG0646 WD40 repeat protein [G 94.2 5.9 0.00013 38.7 18.4 157 150-336 83-245 (476)
19 KOG3669 Uncharacterized conser 94.1 3.1 6.7E-05 41.7 15.7 108 156-282 190-298 (705)
20 KOG0943 Predicted ubiquitin-pr 90.5 0.041 8.9E-07 58.7 -2.0 136 148-291 373-510 (3015)
21 PF11725 AvrE: Pathogenicity f 89.0 1.9 4E-05 48.7 8.9 250 46-330 561-815 (1774)
22 KOG0315 G-protein beta subunit 88.4 19 0.00041 32.6 17.8 143 101-287 133-279 (311)
23 KOG0943 Predicted ubiquitin-pr 87.6 0.098 2.1E-06 56.0 -1.7 135 95-236 374-509 (3015)
24 PF07569 Hira: TUP1-like enhan 85.2 3.6 7.8E-05 36.9 7.3 27 312-338 14-40 (219)
25 cd00200 WD40 WD40 domain, foun 85.1 27 0.00058 31.0 30.3 107 43-175 10-122 (289)
26 COG4257 Vgb Streptogramin lyas 82.9 39 0.00086 31.2 12.7 107 44-173 94-205 (353)
27 KOG1408 WD40 repeat protein [F 81.5 74 0.0016 33.4 15.6 101 49-173 139-246 (1080)
28 KOG0293 WD40 repeat-containing 81.3 55 0.0012 31.9 13.5 75 200-286 394-470 (519)
29 PF04841 Vps16_N: Vps16, N-ter 80.6 63 0.0014 32.0 19.0 69 95-173 81-152 (410)
30 PF07569 Hira: TUP1-like enhan 80.5 9.7 0.00021 34.1 8.1 29 95-123 13-41 (219)
31 KOG0646 WD40 repeat protein [G 80.4 61 0.0013 31.9 13.6 138 85-232 163-307 (476)
32 TIGR01063 gyrA DNA gyrase, A s 77.3 1.2E+02 0.0025 33.2 19.2 216 101-339 543-770 (800)
33 TIGR01063 gyrA DNA gyrase, A s 77.0 1.2E+02 0.0025 33.1 20.4 214 49-287 543-770 (800)
34 PRK05560 DNA gyrase subunit A; 74.8 1.3E+02 0.0029 32.7 19.4 260 52-339 498-773 (805)
35 KOG0649 WD40 repeat protein [G 74.0 69 0.0015 29.0 11.9 81 200-284 61-142 (325)
36 PRK05560 DNA gyrase subunit A; 73.5 1.4E+02 0.0031 32.5 21.7 216 49-288 545-774 (805)
37 PLN02153 epithiospecifier prot 73.3 88 0.0019 29.9 21.0 17 321-338 244-260 (341)
38 KOG0289 mRNA splicing factor [ 69.2 1.2E+02 0.0026 29.8 12.7 68 321-405 350-419 (506)
39 cd00200 WD40 WD40 domain, foun 67.4 88 0.0019 27.5 26.6 108 96-231 11-122 (289)
40 COG4257 Vgb Streptogramin lyas 67.1 77 0.0017 29.4 10.1 140 51-229 62-205 (353)
41 smart00706 TECPR Beta propelle 66.7 14 0.0003 22.0 3.9 24 96-119 9-33 (35)
42 smart00706 TECPR Beta propelle 66.0 13 0.00029 22.1 3.7 24 312-335 9-33 (35)
43 KOG1900 Nuclear pore complex, 62.9 2.7E+02 0.0059 31.6 19.3 217 107-337 92-339 (1311)
44 KOG4441 Proteins containing BT 62.3 1E+02 0.0023 32.0 11.7 72 48-123 319-390 (571)
45 KOG1274 WD40 repeat protein [G 62.1 2.4E+02 0.0051 30.6 14.4 70 157-232 14-86 (933)
46 KOG4441 Proteins containing BT 62.0 1.3E+02 0.0027 31.4 12.3 57 273-337 471-530 (571)
47 PF02239 Cytochrom_D1: Cytochr 59.3 1.8E+02 0.0039 28.3 14.3 73 96-183 28-104 (369)
48 KOG1900 Nuclear pore complex, 59.2 1.3E+02 0.0027 34.1 11.8 165 215-410 93-277 (1311)
49 KOG0278 Serine/threonine kinas 59.0 1.4E+02 0.0031 27.2 14.3 124 41-174 39-171 (334)
50 PF06739 SBBP: Beta-propeller 58.9 13 0.00027 22.9 2.7 19 269-287 15-33 (38)
51 KOG1274 WD40 repeat protein [G 58.0 2.8E+02 0.006 30.1 20.9 70 50-121 13-85 (933)
52 KOG0649 WD40 repeat protein [G 56.9 1.6E+02 0.0034 26.9 18.4 48 147-195 61-109 (325)
53 PHA03098 kelch-like protein; P 55.7 1.1E+02 0.0025 31.3 10.8 17 268-285 381-397 (534)
54 KOG0291 WD40-repeat-containing 55.4 2.9E+02 0.0062 29.5 25.9 112 161-289 312-425 (893)
55 KOG0291 WD40-repeat-containing 53.0 3.1E+02 0.0068 29.2 23.5 119 45-177 300-423 (893)
56 PHA02713 hypothetical protein; 49.8 1.1E+02 0.0024 31.7 9.6 14 273-286 347-360 (557)
57 PHA02713 hypothetical protein; 49.5 2E+02 0.0043 29.8 11.4 14 325-338 459-472 (557)
58 KOG1034 Transcriptional repres 49.4 1.6E+02 0.0034 28.0 9.2 57 273-337 324-382 (385)
59 TIGR02658 TTQ_MADH_Hv methylam 49.3 2.6E+02 0.0055 27.1 20.3 256 34-329 79-352 (352)
60 PF04762 IKI3: IKI3 family; I 48.4 4.3E+02 0.0093 29.5 19.6 28 43-70 427-456 (928)
61 KOG4693 Uncharacterized conser 46.7 1.6E+02 0.0035 27.1 8.7 64 267-338 79-148 (392)
62 TIGR03300 assembly_YfgL outer 45.8 1.2E+02 0.0027 29.2 8.9 15 159-173 362-376 (377)
63 PF04841 Vps16_N: Vps16, N-ter 43.4 3.4E+02 0.0074 26.9 19.5 70 149-229 81-152 (410)
64 PF12341 DUF3639: Protein of u 41.3 67 0.0015 18.2 3.7 22 311-332 2-23 (27)
65 PLN03215 ascorbic acid mannose 39.6 1.1E+02 0.0023 29.9 7.0 62 44-120 161-225 (373)
66 KOG1034 Transcriptional repres 38.7 76 0.0016 30.0 5.5 57 108-174 323-381 (385)
67 TIGR03548 mutarot_permut cycli 37.4 3.6E+02 0.0078 25.4 12.2 17 390-406 217-233 (323)
68 KOG0278 Serine/threonine kinas 36.4 3.4E+02 0.0074 24.9 10.2 38 84-122 134-173 (334)
69 PHA02146 hypothetical protein 36.2 47 0.001 23.3 2.9 32 155-186 24-56 (86)
70 PHA03098 kelch-like protein; P 35.8 2.4E+02 0.0051 28.9 9.5 17 320-337 381-397 (534)
71 PF03785 Peptidase_C25_C: Pept 35.4 76 0.0017 23.3 4.0 48 357-413 4-52 (81)
72 KOG0307 Vesicle coat complex C 35.2 1.5E+02 0.0032 32.8 7.7 27 266-292 262-290 (1049)
73 KOG1240 Protein kinase contain 34.0 6.8E+02 0.015 28.6 12.3 78 203-288 1050-1130(1431)
74 PF13418 Kelch_4: Galactose ox 33.6 37 0.00081 21.7 2.1 18 320-337 3-20 (49)
75 KOG0293 WD40 repeat-containing 32.9 4.9E+02 0.011 25.7 14.9 72 148-231 395-469 (519)
76 PF01436 NHL: NHL repeat; Int 32.4 84 0.0018 17.5 3.2 18 270-287 5-22 (28)
77 KOG2106 Uncharacterized conser 31.7 5.7E+02 0.012 26.0 15.6 186 101-333 165-352 (626)
78 PRK13979 DNA topoisomerase IV 30.7 8.1E+02 0.017 27.5 20.5 131 148-293 551-696 (957)
79 PF03785 Peptidase_C25_C: Pept 30.6 85 0.0018 23.0 3.6 30 151-180 18-48 (81)
80 KOG1408 WD40 repeat protein [F 30.5 7E+02 0.015 26.7 11.9 73 203-284 167-247 (1080)
81 KOG2055 WD40 repeat protein [G 30.0 3.3E+02 0.0071 27.2 8.4 50 212-265 390-442 (514)
82 KOG0296 Angio-associated migra 30.0 5.2E+02 0.011 25.0 17.4 258 27-335 91-353 (399)
83 PF10168 Nup88: Nuclear pore c 29.3 4.6E+02 0.0099 28.2 10.3 122 270-399 34-173 (717)
84 PF14517 Tachylectin: Tachylec 29.1 4.3E+02 0.0093 23.8 8.7 25 46-70 73-100 (229)
85 PLN03215 ascorbic acid mannose 28.7 2.5E+02 0.0054 27.4 7.6 62 96-174 161-225 (373)
86 PF11399 DUF3192: Protein of u 28.6 39 0.00085 26.0 1.7 24 386-409 78-101 (102)
87 KOG0641 WD40 repeat protein [G 28.5 4.4E+02 0.0094 23.7 16.4 64 55-124 37-111 (350)
88 TIGR03548 mutarot_permut cycli 26.5 5.5E+02 0.012 24.1 10.2 14 392-405 299-312 (323)
89 KOG1240 Protein kinase contain 25.9 1E+03 0.023 27.2 17.7 163 43-230 1049-1223(1431)
90 KOG0289 mRNA splicing factor [ 23.9 7E+02 0.015 24.8 9.4 68 159-230 350-417 (506)
91 PRK11138 outer membrane biogen 23.8 4.9E+02 0.011 25.3 9.1 15 159-173 377-391 (394)
92 KOG2444 WD40 repeat protein [G 23.4 1.6E+02 0.0034 26.5 4.7 66 154-231 66-131 (238)
93 KOG1539 WD repeat protein [Gen 23.2 9.9E+02 0.021 26.0 20.4 241 31-326 66-314 (910)
94 PF15416 DUF4623: Domain of un 23.1 2.5E+02 0.0055 26.8 6.1 45 358-407 217-262 (442)
95 PF02239 Cytochrom_D1: Cytochr 23.1 7E+02 0.015 24.2 11.7 118 43-173 27-155 (369)
96 TIGR01062 parC_Gneg DNA topois 22.4 1E+03 0.022 25.8 16.5 122 267-412 535-661 (735)
97 PF08450 SGL: SMP-30/Gluconola 22.1 5.6E+02 0.012 22.8 10.2 150 56-219 91-244 (246)
98 KOG1275 PAB-dependent poly(A) 21.8 1.1E+03 0.024 26.1 13.7 169 150-347 171-351 (1118)
99 COG5308 NUP170 Nuclear pore co 21.5 1.1E+03 0.024 26.0 12.1 64 55-122 95-160 (1263)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=9.7e-53 Score=392.42 Aligned_cols=355 Identities=27% Similarity=0.417 Sum_probs=291.6
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCc-ccccccCcC--CCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCc
Q 014027 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEA 127 (432)
Q Consensus 51 G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~-~~p~~i~~~--~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gql 127 (432)
-..|...++.-..||+||+|...|||.++.+.. ..|+..+.. ....|++++||..|+++|+.||+||+||.|..|+|
T Consensus 57 ~~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~L 136 (476)
T COG5184 57 INKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGAL 136 (476)
T ss_pred cccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccc
Confidence 456666888899999999999999999986655 778888766 55689999999999999999999999999999999
Q ss_pred cCCCC--------------CcccccCCeeecc----cCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCc
Q 014027 128 EYGVQ--------------GTKLVTSPQLVES----LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND 189 (432)
Q Consensus 128 g~~~~--------------~~~~~~~p~~v~~----~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~ 189 (432)
|.... .......|.+|+. ....+|++++||++++++|+++|+||+||....+.++.+...+.
T Consensus 137 gr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s 216 (476)
T COG5184 137 GRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNS 216 (476)
T ss_pred ccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCcccccccccccccc
Confidence 98761 2345677888876 33458999999999999999999999999998888887743333
Q ss_pred cc----ccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEE
Q 014027 190 VE----PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA 265 (432)
Q Consensus 190 ~~----p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~ 265 (432)
.. +.++.. ....|+++++|.+|.++|+. +| ++|.||++..||||+........+..+..+- .-..|++|+
T Consensus 217 ~k~~~~~~p~~v--~~~~i~qla~G~dh~i~lt~--~G-~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~va 290 (476)
T COG5184 217 QKTSIQFTPLKV--PKKAIVQLAAGADHLIALTN--EG-KVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVA 290 (476)
T ss_pred ccceeeeeeeec--CchheeeeccCCceEEEEec--CC-cEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcc
Confidence 22 333322 24569999999999999998 99 9999999999999998887766666664422 122378999
Q ss_pred cCCceEEEEeCCCCEEEEecCCCCcccCCC----CCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCC
Q 014027 266 AGAWHAAVVGQDGRVCTWGWGRYGCLGHGN----EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESA 341 (432)
Q Consensus 266 ~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~----~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~g 341 (432)
||.+|++||+++|+||+||.|-+||||.+. ......|.....+.+..|.+|++|..|+++|..+|.+|+||++..+
T Consensus 291 cG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ 370 (476)
T COG5184 291 CGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRG 370 (476)
T ss_pred cCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccc
Confidence 999999999999999999999999999982 1233456666667777899999999999999999999999999999
Q ss_pred CCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccC
Q 014027 342 SLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTER 421 (432)
Q Consensus 342 qlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~ 421 (432)
|||..+ +.......|.++... ..+.+|+| |..|+++.+.+|+||.||+|++||||+|+.. .+.
T Consensus 371 qlg~~~------~~~~~~~~~~~ls~~----~~~~~v~~-----gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~--~~~ 433 (476)
T COG5184 371 QLGIQE------EITIDVSTPTKLSVA----IKLEQVAC-----GTHHNIARTDDGSVYSWGWGEHGNLGNGPKE--ADV 433 (476)
T ss_pred cccCcc------cceeecCCccccccc----cceEEEEe-----cCccceeeccCCceEEecCchhhhccCCchh--hhc
Confidence 999977 123334444444433 57899999 9999999999999999999999999999865 456
Q ss_pred CCceEee
Q 014027 422 GNPERVD 428 (432)
Q Consensus 422 ~~P~~v~ 428 (432)
..|+.+.
T Consensus 434 ~~pt~i~ 440 (476)
T COG5184 434 LVPTLIR 440 (476)
T ss_pred ccccccc
Confidence 7777776
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=2.2e-46 Score=349.84 Aligned_cols=333 Identities=25% Similarity=0.373 Sum_probs=267.9
Q ss_pred cccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCC----------------CCcccccccCc----CCCCcEEEEEc
Q 014027 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT----------------EEEWRPRPIRS----LQGIRIIQAAA 102 (432)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~----------------~~~~~p~~i~~----~~~~~i~~v~~ 102 (432)
..|++++||..|+++|++||+||+||.|..|+||.... +....|..++. .+..++++++|
T Consensus 104 ~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~c 183 (476)
T COG5184 104 ASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLAC 183 (476)
T ss_pred eeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceeeccccccCChheEEeec
Confidence 57899999999999999999999999999999997651 12456777765 23458999999
Q ss_pred CCCeEEEEecCCCEEEEeCCCCCCccCCCCCcc----cccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCC
Q 014027 103 GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK----LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND 178 (432)
Q Consensus 103 g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~----~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~ 178 (432)
|+.++++|+++|+||.||....+.++.+..... ....|..+. ...|+++++|.+|.++|+++|++|+||.|..
T Consensus 184 g~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qk 260 (476)
T COG5184 184 GWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQK 260 (476)
T ss_pred CCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcc
Confidence 999999999999999999998888877742222 335555554 4569999999999999999999999999999
Q ss_pred CcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhc--
Q 014027 179 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-- 256 (432)
Q Consensus 179 gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~-- 256 (432)
||||.........+..+...+.-..|..|+||.+|+++|.+ +| +||+||.|.+||||.++.........-+.++.
T Consensus 261 gqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~~--~G-~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~ 337 (476)
T COG5184 261 GQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALDE--DG-EIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL 337 (476)
T ss_pred cccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEcC--CC-eEEEeccchhcccccCcccccceeeccccccccC
Confidence 99999987776666666554555558999999999999998 99 99999999999999983221111111111221
Q ss_pred cCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCC--CCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEE
Q 014027 257 LNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN--EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYS 334 (432)
Q Consensus 257 ~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~--~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~ 334 (432)
....|..|++|..|+++|.++|.||+||.+..+|||... ......|+++.... ++.+++||..|+++.+.+|+||.
T Consensus 338 ~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~--~~~~v~~gt~~~~~~t~~gsvy~ 415 (476)
T COG5184 338 SGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI--KLEQVACGTHHNIARTDDGSVYS 415 (476)
T ss_pred CCceEEEEecCcceEEEEecCceEEEecCCccccccCcccceeecCCcccccccc--ceEEEEecCccceeeccCCceEE
Confidence 334588999999999999999999999999999999988 55555666665333 68999999999999999999999
Q ss_pred EeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeC
Q 014027 335 FGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTE 395 (432)
Q Consensus 335 ~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~ 395 (432)
||.+.+|+||.+. .......|+.+.........++...+ |...+++...
T Consensus 416 wG~ge~gnlG~g~-------~~~~~~~pt~i~~~~~~~~~~i~~g~-----~~~~~v~~~~ 464 (476)
T COG5184 416 WGWGEHGNLGNGP-------KEADVLVPTLIRQPLLSGHNIILAGY-----GNQFSVIEET 464 (476)
T ss_pred ecCchhhhccCCc-------hhhhccccccccccccCCCceEEecc-----CcceEEEecc
Confidence 9999999999987 56777888888764335567777777 7666666543
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=8e-42 Score=299.56 Aligned_cols=325 Identities=28% Similarity=0.429 Sum_probs=275.7
Q ss_pred ceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCC
Q 014027 46 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFG 125 (432)
Q Consensus 46 ~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~g 125 (432)
+.-.|-..|+++++-+|++|.||+|..||||.++.....+|+.|+.+...+|++-+||++|+++||++|.||.+|.|.+|
T Consensus 61 VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~G 140 (443)
T KOG1427|consen 61 VASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYG 140 (443)
T ss_pred EecccchhhEEEEecccceeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccc
Confidence 33345567999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCc--------------cc
Q 014027 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPND--------------VE 191 (432)
Q Consensus 126 qlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~--------------~~ 191 (432)
|||.++...+..+.|. + ......|+.|+||.++++.|+..+.+.++|...+||||.+++... ..
T Consensus 141 QlGlgn~~~~v~s~~~-~-~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr 218 (443)
T KOG1427|consen 141 QLGLGNAKNEVESTPL-P-CVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPR 218 (443)
T ss_pred cccccccccccccCCC-c-cccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCC
Confidence 9999985444333332 2 233456999999999999999999999999999999999987533 23
Q ss_pred ccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceE
Q 014027 192 PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHA 271 (432)
Q Consensus 192 p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~ 271 (432)
|..+.. +.+.+|++++||.+|++++.+ ++ +||+||-.-||.||.....+...|+.+..|+..+.--.++.||+..+
T Consensus 219 ~~~i~~-~dgvqiv~~acg~nhtvavd~--nk-rVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~S 294 (443)
T KOG1427|consen 219 PKAIAS-LDGVQIVKVACGTNHTVAVDK--NK-RVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGS 294 (443)
T ss_pred cccccc-ccceeeEEEeccCcceeeecC--Cc-cEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccc
Confidence 434443 788899999999999999998 88 99999999999999999999999999999988777778999999999
Q ss_pred EEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCC
Q 014027 272 AVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADG 351 (432)
Q Consensus 272 ~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~ 351 (432)
+.+.+-|.||.||.+.. +-+.-..|.++..+.+..+..+.|+..|.++ ..|.....||...++.+.-+.
T Consensus 295 l~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp---- 363 (443)
T KOG1427|consen 295 LNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGP---- 363 (443)
T ss_pred eeecccceeEEeecccc------CcccccCCCchhhcCCccCCCcCccceeeee-cccccccccccccccccccCc----
Confidence 99999999999998653 2244467888888889899999999877655 556789999988777654443
Q ss_pred CCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCC
Q 014027 352 QGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTES 396 (432)
Q Consensus 352 ~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~ 396 (432)
+.+.....|..++.+ ....|-+|++ |..|++++.++
T Consensus 364 --~~Qkss~~Pk~v~~l--~~i~v~~Vam-----GysHs~vivd~ 399 (443)
T KOG1427|consen 364 --NGQKSSAAPKKVDML--EGIHVMGVAM-----GYSHSMVIVDR 399 (443)
T ss_pred --cccccccCccccchh--cceeccceee-----ccceEEEEEcc
Confidence 246677789989888 6678999999 99999998654
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.2e-40 Score=290.59 Aligned_cols=337 Identities=26% Similarity=0.414 Sum_probs=276.3
Q ss_pred CCcEEEEeCCCCCCcCCCC---CCCcccccccCcCCCCcEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcc
Q 014027 61 KGVVYSFGSNSSGQLGHGT---TEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTK 135 (432)
Q Consensus 61 ~g~v~~~G~n~~gqlG~~~---~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~ 135 (432)
-|++..+|.-...+.|.-+ ..+...|.++..+.+.+|..|++| ..|+++|+-+|+.|.||+|..||||.++ ..
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD--~k 96 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGD--MK 96 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccc--hh
Confidence 3677777766655555332 235677999999999999999876 5699999999999999999999999995 78
Q ss_pred cccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEeccccee
Q 014027 136 LVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLL 215 (432)
Q Consensus 136 ~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~ 215 (432)
....|+.++.|...+|++.+||++|+++||++|.+|+||+|.+||||.+...+......+.. .....|+.|+||.++++
T Consensus 97 ~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~-~~~~~v~~v~cga~ftv 175 (443)
T KOG1427|consen 97 QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPC-VVSDEVTNVACGADFTV 175 (443)
T ss_pred hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCcc-ccCccceeeccccceEE
Confidence 88999999999999999999999999999999999999999999999998776655544443 45567999999999999
Q ss_pred EEEeeCCCCEEEEEccCCCCCcCCCCCCC--------------CCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEE
Q 014027 216 ALACQPSGMAVYSVGCGLGGKLGHGSRTD--------------EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVC 281 (432)
Q Consensus 216 ~l~~~~~G~~vy~~G~n~~gqlg~~~~~~--------------~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy 281 (432)
.|.. .+ .|.++|-..|||||.+.... +..|..+.. ...++|++++||.+|++|++++++||
T Consensus 176 ~l~~--~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~--~dgvqiv~~acg~nhtvavd~nkrVy 250 (443)
T KOG1427|consen 176 WLSS--TE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIAS--LDGVQIVKVACGTNHTVAVDKNKRVY 250 (443)
T ss_pred Eeec--cc-ceeecCCccccccccCcchhhccccccceeeeecCCCcccccc--ccceeeEEEeccCcceeeecCCccEE
Confidence 9998 88 99999999999999985532 223333433 45778999999999999999999999
Q ss_pred EEecCCCCcccCCCCCCccCcEEecccC--CCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCccccc
Q 014027 282 TWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 359 (432)
Q Consensus 282 ~wG~n~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~ 359 (432)
.||.+-||.||+-.......|+.+..++ +.---++.||...++++.+-|.+|.||.+... -+..
T Consensus 251 sWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~--------------ge~~ 316 (443)
T KOG1427|consen 251 SWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQLFMWGKIKNN--------------GEDW 316 (443)
T ss_pred EeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccceeEEeeccccC--------------cccc
Confidence 9999999999999888888898887653 44567789999999999999999999987532 4456
Q ss_pred ccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCCCceEee
Q 014027 360 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 428 (432)
Q Consensus 360 ~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~ 428 (432)
..|.++..+ ..-.+..+.+ ++.|. .+..|..+.+||..-+|.++-|.. -+.....|..++
T Consensus 317 mypkP~~dl--sgwnl~~~~~-----~~~h~-~v~ad~s~i~wg~~~~g~~lggp~-~Qkss~~Pk~v~ 376 (443)
T KOG1427|consen 317 MYPKPMMDL--SGWNLRWMDS-----GSMHH-FVGADSSCISWGHAQYGELLGGPN-GQKSSAAPKKVD 376 (443)
T ss_pred cCCCchhhc--CCccCCCcCc-----cceee-eecccccccccccccccccccCcc-ccccccCccccc
Confidence 677777766 4456788888 87665 456778899999998888776654 456667777665
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.95 E-value=3.4e-27 Score=231.36 Aligned_cols=305 Identities=20% Similarity=0.291 Sum_probs=231.0
Q ss_pred EEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCC--CCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCC
Q 014027 56 IAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQ--GIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQG 133 (432)
Q Consensus 56 ~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~--~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~ 133 (432)
.+++....||.||.|....||+|+......|.++..++ +.-+.+|+.+..|++++++.|+||+||...-|.||.+.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd-- 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD-- 213 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc--
Confidence 45566688999999999999999988888899988664 55678999999999999999999999999999999995
Q ss_pred cccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcc-cccccccc-cCCC-CEEEEEec
Q 014027 134 TKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDV-EPHPLLGT-LENI-PVVQIAAG 210 (432)
Q Consensus 134 ~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~-~p~~i~~~-~~~~-~i~~i~~g 210 (432)
......|++|+.+.+.+|.+|+....|+++||++|.||+||.|..+|||..+..... .|..+... ..+. .|+-|++|
T Consensus 214 eq~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg 293 (1267)
T KOG0783|consen 214 EQYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAG 293 (1267)
T ss_pred ccccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcc
Confidence 778899999999999999999999999999999999999999999999988765432 33333321 1222 59999999
Q ss_pred ccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC-CCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCC
Q 014027 211 YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYG 289 (432)
Q Consensus 211 ~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~-~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~g 289 (432)
..|+++-+ +- .||+||-| .||||..++.. ...|+.+. .....++-++|...-+++++.++.+|++-+-+
T Consensus 294 ~~hsVawt---~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~---~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~-- 363 (1267)
T KOG0783|consen 294 KSHSVAWT---DT-DVYSWGLN-NGQLGISDNISVVTTPRRLA---GLLSPVIHVVATTRATVCLLQNNSIIAFADYN-- 363 (1267)
T ss_pred cceeeeee---cc-eEEEeccc-CceecCCCCCceeecchhhc---ccccceEEEEecCccEEEEecCCcEEEEeccc--
Confidence 99999999 66 99999987 68999877644 45665442 34567889999999999999999999987633
Q ss_pred cccCCCCCCccCcEEecc----cCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeee
Q 014027 290 CLGHGNEECESVPKVVQA----LNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLV 365 (432)
Q Consensus 290 qlg~~~~~~~~~p~~i~~----~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v 365 (432)
|.-.........-.++.. +.-..+.+..+...--++||+-|+||.|-.+... .......|..+
T Consensus 364 ~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-------------~~~c~ftp~r~ 430 (1267)
T KOG0783|consen 364 QVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-------------RTSCKFTPLRI 430 (1267)
T ss_pred ceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-------------eeeeeccccee
Confidence 222211111111111110 0112455667777888999999999999855321 23344445444
Q ss_pred eecccccceEEEEeeeccccccceEEEEeCCC
Q 014027 366 TSLKQVNERVVQISLTNSIYWNAHTFALTESG 397 (432)
Q Consensus 366 ~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G 397 (432)
- .|.+|+- -.+..+++|.||
T Consensus 431 ~-------~isdIa~-----~~N~~~~~t~dG 450 (1267)
T KOG0783|consen 431 F-------EISDIAW-----TANSLILCTRDG 450 (1267)
T ss_pred e-------ehhhhhh-----ccceEEEEecCc
Confidence 3 3446665 556778889998
No 6
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.94 E-value=6.5e-26 Score=230.24 Aligned_cols=315 Identities=22% Similarity=0.341 Sum_probs=225.3
Q ss_pred eeecccceEecCCCeEEEEecCCc--EEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEE
Q 014027 40 CCRRENSQAIAGPGHSIAVTSKGV--VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVY 117 (432)
Q Consensus 40 ~~~~~i~~i~~G~~~~~~l~~~g~--v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy 117 (432)
+...+|++|+.|-+..+++.--|. +++-|.. +.....+++...+..+|+.|.+...---.+.++|++|
T Consensus 522 ~l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~----------k~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkif 591 (3738)
T KOG1428|consen 522 CLPEPIVQISVGIDTIMFRSGAGHGWIASVDDK----------KRNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIF 591 (3738)
T ss_pred cCCCceEEEEeccchhheeeccCcceEEeccCc----------ccccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEE
Confidence 556799999999999888875544 4444421 2222344444455668988876665556889999999
Q ss_pred EEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccc------
Q 014027 118 AFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE------ 191 (432)
Q Consensus 118 ~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~------ 191 (432)
..|.... ......+.+..+++.-|.+++.|..|.++++.+|+||+||.|+.+|||.-.......
T Consensus 592 M~G~~tm----------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~ 661 (3738)
T KOG1428|consen 592 MGGLHTM----------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSG 661 (3738)
T ss_pred eecceeE----------EecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCccccc
Confidence 9986532 122333456678888899999999999999999999999999999999754432211
Q ss_pred -------ccccccccCCCCEEEEEecccceeEEE----eeCCCCEEEEEccCCCCCcCCCC--------C----------
Q 014027 192 -------PHPLLGTLENIPVVQIAAGYCYLLALA----CQPSGMAVYSVGCGLGGKLGHGS--------R---------- 242 (432)
Q Consensus 192 -------p~~i~~~~~~~~i~~i~~g~~~~~~l~----~~~~G~~vy~~G~n~~gqlg~~~--------~---------- 242 (432)
|......+.+...+.-.||......+. -...| .+-.+|.+..+.+--+- .
T Consensus 662 ~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G-~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHv 740 (3738)
T KOG1428|consen 662 RQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKG-TMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHV 740 (3738)
T ss_pred ceeecccCCccceeecCCcchhhhcccccccccccccCCCCCC-cccccCCCcccceeccccccccCcCCcCCCCHHHhh
Confidence 111112233334444455544333322 23355 67777766555442210 0
Q ss_pred ---------CCCCCceeeeh-hhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCc
Q 014027 243 ---------TDEKHPRLIEQ-FQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK 312 (432)
Q Consensus 243 ---------~~~~~p~~~~~-~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 312 (432)
.....|..+.. ....+.++.+|+||..|+++|.+|++||.+|+|-+||||.++......|+.+..+.+..
T Consensus 741 Q~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~ 820 (3738)
T KOG1428|consen 741 QFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTV 820 (3738)
T ss_pred eecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCc
Confidence 00122222221 12346788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeeccc-ccceEEEEee
Q 014027 313 AIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQ-VNERVVQISL 380 (432)
Q Consensus 313 i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~-~~~~i~~i~~ 380 (432)
|+||++|.+|++++..||.||.+|....|||+.+. .+.......|.+++.+.. .+.....|.+
T Consensus 821 ~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~-----~e~~~WNA~Pe~v~~~G~~f~~~A~WIGA 884 (3738)
T KOG1428|consen 821 IVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPA-----GEKAGWNAIPEKVSGFGPGFNAFAGWIGA 884 (3738)
T ss_pred eEEEecCCCceEEEecCCcEEEeccccCccccCcc-----ccccccccCCCcCCCCCccccccceeecc
Confidence 99999999999999999999999999999999876 334566778888887743 5667778877
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=4.6e-26 Score=223.50 Aligned_cols=275 Identities=24% Similarity=0.331 Sum_probs=212.2
Q ss_pred EEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccC--CccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCC
Q 014027 108 MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK--NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 185 (432)
Q Consensus 108 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~--~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 185 (432)
.+++.-+.||+||.|....||.++ ......|..|..++ +.-+.+|+.+..|++++++.|+||++|-+.-|.||.+.
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign--~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gd 213 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGN--GKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGD 213 (1267)
T ss_pred cccCCccceeEecccccccccccC--CCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCc
Confidence 455666899999999999999997 56667888887664 55688999999999999999999999999999999998
Q ss_pred CCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC-CCCceeeehhhccCC-ccEE
Q 014027 186 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-EKHPRLIEQFQLLNL-QPVV 263 (432)
Q Consensus 186 ~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~-~~~p~~~~~~~~~~~-~i~~ 263 (432)
......|.++.. +.+.+|.+|+....|+++||+ .| .||+||-|..+|||..+... ...|.++...-..+. .|+.
T Consensus 214 eq~~~iPkrV~g-L~gh~~~qisvs~~HslvLT~--~g-~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIg 289 (1267)
T KOG0783|consen 214 EQYNFIPKRVPG-LIGHKVIQISVSHTHSLVLTK--FG-SVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIG 289 (1267)
T ss_pred cccccccccccc-ccccceEEEEeecceeEEEee--cc-eEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhh
Confidence 888888888888 888999999999999999999 99 99999999999999876543 566666655443444 7899
Q ss_pred EEcCCceEEEEeCCCCEEEEecCCCCcccCCC-CCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCC
Q 014027 264 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGN-EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 342 (432)
Q Consensus 264 i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~-~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gq 342 (432)
+++|..|+++.|+. .||+||.| .||||..+ ...++.|+.+- .....|..++|...-|+++++++.+|++-+-....
T Consensus 290 vaAg~~hsVawt~~-~VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~-~~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k 366 (1267)
T KOG0783|consen 290 VAAGKSHSVAWTDT-DVYSWGLN-NGQLGISDNISVVTTPRRLA-GLLSPVIHVVATTRATVCLLQNNSIIAFADYNQVK 366 (1267)
T ss_pred hhcccceeeeeecc-eEEEeccc-CceecCCCCCceeecchhhc-ccccceEEEEecCccEEEEecCCcEEEEeccccee
Confidence 99999999999876 89999997 58999876 44556776552 23457899999999999999999999987543332
Q ss_pred CCCCCCcCCCCCcccccccCeeeeeccc--ccceEEEEeeeccccccceEEEEeCCCCEEEecCCC
Q 014027 343 LGHNAIADGQGNRHANVLTPQLVTSLKQ--VNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 406 (432)
Q Consensus 343 lg~~~~~~~~~~~~~~~~~p~~v~~~~~--~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~ 406 (432)
+.... ....-..|..-.. .-..+.+-.+ -...-++||+-|+||.|-.++
T Consensus 367 ~~~n~----------~~lks~~V~gg~l~~~~~~~~k~~a-----~~~kll~lte~g~Vy~w~s~n 417 (1267)
T KOG0783|consen 367 LPFNV----------DFLKSLKVTGGPLSLTRFNVRKLLA-----SENKLLVLTELGEVYEWDSKN 417 (1267)
T ss_pred cCcch----------hccceeEEecCccchhhhhhhhcch-----hhhheeeeccCCeEEEEecCC
Confidence 22211 1111111211100 0112334444 445667889999999998665
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.3e-23 Score=210.81 Aligned_cols=342 Identities=22% Similarity=0.286 Sum_probs=231.3
Q ss_pred ecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEe--cCCCEEEE
Q 014027 42 RRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYAF 119 (432)
Q Consensus 42 ~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt--~~g~vy~~ 119 (432)
.++-++...++..+++-+.+|+||..|.... +|+-+.... ...+..+ .+|++|+.|-+.++++. .+|-++.-
T Consensus 478 ~~qtv~L~~~RE~A~iqa~sGKvYYaGn~t~--~Gl~e~G~n--WmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v 551 (3738)
T KOG1428|consen 478 HPQTVDLHFTREMAFIQARSGKVYYAGNGTR--FGLFETGNN--WMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASV 551 (3738)
T ss_pred CchheecccchhhhhhhhcCccEEEecCccE--EeEEccCCc--eEEecCC--CceEEEEeccchhheeeccCcceEEec
Confidence 3456788889999999999999999997653 444333333 3333333 38999999988777765 45556665
Q ss_pred eCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014027 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (432)
Q Consensus 120 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 199 (432)
|+... .-...+.++ ....||++|.+...---.+.++|++|..|.... ........+.. +
T Consensus 552 ~D~k~-----------~~~~Rr~~P-~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm--------~~n~SSqmln~-L 610 (3738)
T KOG1428|consen 552 DDKKR-----------NGRLRRLVP-SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM--------RVNVSSQMLNG-L 610 (3738)
T ss_pred cCccc-----------ccchhhcCC-CCcceeEEEeeeeEEEEEEccCCeEEeecceeE--------EecchHHHhhc-c
Confidence 53321 111111111 234578887655444456899999998875431 11112223333 7
Q ss_pred CCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCC-CCceeeehhh-----------ccCCccEEEEcC
Q 014027 200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDE-KHPRLIEQFQ-----------LLNLQPVVVAAG 267 (432)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~-~~p~~~~~~~-----------~~~~~i~~i~~G 267 (432)
++.-|.+++.|..|.++++. +| .||+||-|+.+|+|+-..... ..|..-...+ ..+...+...||
T Consensus 611 ~~~~isslAlGKsH~~av~r--NG-~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG 687 (3738)
T KOG1428|consen 611 DNVMISSLALGKSHGVAVTR--NG-HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCG 687 (3738)
T ss_pred ccceeehhhccccceeEEEe--CC-eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcc
Confidence 77889999999999999999 99 999999999999998644321 1111111000 011122233333
Q ss_pred CceEEE------EeCCCCEEEEecCCCCcccCCC--------------------CCCccCcEE-------e---cccCCC
Q 014027 268 AWHAAV------VGQDGRVCTWGWGRYGCLGHGN--------------------EECESVPKV-------V---QALNDV 311 (432)
Q Consensus 268 ~~h~~~------lt~~g~vy~wG~n~~gqlg~~~--------------------~~~~~~p~~-------i---~~~~~~ 311 (432)
.....- -.-.|.+..||.++.+.+--+- ......|+. + +...+.
T Consensus 688 ~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdv 767 (3738)
T KOG1428|consen 688 LCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDV 767 (3738)
T ss_pred cccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcce
Confidence 322111 1235677778877765542210 001112222 2 223467
Q ss_pred cEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEE
Q 014027 312 KAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTF 391 (432)
Q Consensus 312 ~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~ 391 (432)
++.+|+||..|+++|.+|++||.+|+|-+||||.++ ......|+.+..+ .+..+++|++ |++|++
T Consensus 768 kv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GD--------t~Sk~~Pq~V~~~--~~t~~vQVaA-----GSNHT~ 832 (3738)
T KOG1428|consen 768 KVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGD--------TLSKNTPQQVILP--SDTVIVQVAA-----GSNHTI 832 (3738)
T ss_pred eEEEEeccCceEEEEecCCcEEEecCCcccccCcCc--------cccCCCcceEEcC--CCCceEEEec-----CCCceE
Confidence 899999999999999999999999999999999999 6666788888877 5578999999 999999
Q ss_pred EEeCCCCEEEecCCCCcccCCccccCCccCCCceEee
Q 014027 392 ALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 428 (432)
Q Consensus 392 ~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~ 428 (432)
++..||+||++|.-..||||.+.-+.......|.+++
T Consensus 833 l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~ 869 (3738)
T KOG1428|consen 833 LRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVS 869 (3738)
T ss_pred EEecCCcEEEeccccCccccCccccccccccCCCcCC
Confidence 9999999999999999999999877777777776654
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.31 E-value=2e-12 Score=87.71 Aligned_cols=50 Identities=42% Similarity=0.728 Sum_probs=47.6
Q ss_pred CCCEEEEecCCCCccc-CCCCCCccCcEEecccCCCcEEEEecCCCcEEEE
Q 014027 277 DGRVCTWGWGRYGCLG-HGNEECESVPKVVQALNDVKAIHVATGDYTTFVV 326 (432)
Q Consensus 277 ~g~vy~wG~n~~gqlg-~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~l 326 (432)
||+||+||.|.+|||| .+.......|++++.+.+.+|++|+||.+|++||
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7788889999999999999999999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.25 E-value=6.5e-12 Score=85.18 Aligned_cols=50 Identities=42% Similarity=0.711 Sum_probs=46.9
Q ss_pred CCcEEEEeCCCCCCcC-CCCCCCcccccccCcCCCCcEEEEEcCCCeEEEE
Q 014027 61 KGVVYSFGSNSSGQLG-HGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI 110 (432)
Q Consensus 61 ~g~v~~~G~n~~gqlG-~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~l 110 (432)
||+||+||.|.+|||| .++......|+++..+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 7777888999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.14 E-value=5.1e-11 Score=70.27 Aligned_cols=30 Identities=37% Similarity=0.753 Sum_probs=25.9
Q ss_pred cEEEEcCCceEEEEeCCCCEEEEecCCCCc
Q 014027 261 PVVVAAGAWHAAVVGQDGRVCTWGWGRYGC 290 (432)
Q Consensus 261 i~~i~~G~~h~~~lt~~g~vy~wG~n~~gq 290 (432)
|++|+||.+|+++|+++|+||+||+|++||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 679999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.04 E-value=2.8e-10 Score=67.08 Aligned_cols=30 Identities=47% Similarity=0.691 Sum_probs=25.9
Q ss_pred EEEEeeeccccccceEEEEeCCCCEEEecCCCCcc
Q 014027 375 VVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQ 409 (432)
Q Consensus 375 i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gq 409 (432)
|++|+| |.+|+++|+++|+||+||.|++||
T Consensus 1 V~~ia~-----G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIAC-----GGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEE-----ESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEe-----cCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999 999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.1e-11 Score=124.25 Aligned_cols=136 Identities=31% Similarity=0.566 Sum_probs=119.1
Q ss_pred CCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEec-------CC
Q 014027 258 NLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSE-------DG 330 (432)
Q Consensus 258 ~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~-------~g 330 (432)
..++.+++||.+|+++++..|++|+||.|.+||+|.+.......|..++.+.+.+..+|++|.+|++++.. +|
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~ 92 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEG 92 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhc
Confidence 34788999999999999999999999999999999996444445999999999999999999999988766 99
Q ss_pred CEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEE-eCCCCEEEecCCCCc
Q 014027 331 DVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFAL-TESGKLYAFGAGDKG 408 (432)
Q Consensus 331 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~l-t~~G~v~~wG~n~~g 408 (432)
.++.+|....+|+|+.. ..+...|..+... ....+++|+| |..|+.+. ..-|++|..|.+..|
T Consensus 93 ~~fs~Ga~~~~q~~h~~--------~~~~~~~~~v~e~--i~~~~t~ia~-----~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSL--------TENEVLPLLVLEL--IGSRVTRIAC-----VRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cccccCCcccccccccc--------cccccccHHHHHH--HhhhhHHHHH-----HHHHHHhhhhhhcceeecccCCCC
Confidence 99999999999999965 5666677777666 6788999999 99899886 567999999999987
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=8.9e-12 Score=125.01 Aligned_cols=188 Identities=26% Similarity=0.339 Sum_probs=138.9
Q ss_pred cccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEE
Q 014027 85 RPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVL 164 (432)
Q Consensus 85 ~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~l 164 (432)
.|.++..+..+++.+++||..|+++++..|++++||.|.+||++.+. .-.... |.+++.+++.+..+|++|..|++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~-~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~l 81 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRAL-YFPDAK-PEPVESLKGVPLAQVSAGEAHSFAL 81 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhc-cCCCCC-CccchhhcCCcHHHHhcCCCcchhh
Confidence 35555566667899999999999999999999999999999999983 233334 9999999999999999999999876
Q ss_pred eC-------CCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCc
Q 014027 165 SR-------EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKL 237 (432)
Q Consensus 165 t~-------~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gql 237 (432)
.. +|.++++|....+|+|.....+...|..+.. .-+..+..|+|+..|+.+... .-| ++|..|.+..|..
T Consensus 82 S~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e-~i~~~~t~ia~~~~ht~a~v~-~l~-qsf~~~~~~sGk~ 158 (850)
T KOG0941|consen 82 SSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLE-LIGSRVTRIACVRGHTLAIVP-RLG-QSFSFGKGASGKG 158 (850)
T ss_pred hhchhhcchhccccccCCcccccccccccccccccHHHHH-HHhhhhHHHHHHHHHHHhhhh-hhc-ceeecccCCCCCc
Confidence 55 9999999999999999976666666666655 556679999999999998875 255 8999998777610
Q ss_pred CCCCCCCCCCceeeehh-hccCCccEEEEcCCceEEEEeCCCCE
Q 014027 238 GHGSRTDEKHPRLIEQF-QLLNLQPVVVAAGAWHAAVVGQDGRV 280 (432)
Q Consensus 238 g~~~~~~~~~p~~~~~~-~~~~~~i~~i~~G~~h~~~lt~~g~v 280 (432)
.-.....+...... +.....+..+.+|.+.++.+...++-
T Consensus 159 ---~i~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~ 199 (850)
T KOG0941|consen 159 ---VIVSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN 199 (850)
T ss_pred ---eeeccchhhhcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence 00011111011110 01122344578888888888666443
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.93 E-value=2.1 Score=42.86 Aligned_cols=69 Identities=23% Similarity=0.289 Sum_probs=48.1
Q ss_pred ccceEecCC-CeEEEEecCCcEEE-EeCCCCCCcCCCCCCCcccccccCcCCCCc-EEEEEcCCCeEEEEecCCCEEEE
Q 014027 44 ENSQAIAGP-GHSIAVTSKGVVYS-FGSNSSGQLGHGTTEEEWRPRPIRSLQGIR-IIQAAAGAGRTMLISDAGQVYAF 119 (432)
Q Consensus 44 ~i~~i~~G~-~~~~~l~~~g~v~~-~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~-i~~v~~g~~~~~~lt~~g~vy~~ 119 (432)
.+++|++|. ....+++.+|.||. .|-....+.|. ..+.|+.+.+.- ++.|+.|....-+||.||++|.-
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~Gd-------sWkdI~tP~~a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGD-------SWKDIVTPRQALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCc-------hhhhccCcccccceEEEEeccceEEEEecCCcEEEE
Confidence 589999999 66789999999865 33322222221 122333333333 99999999999999999999975
No 16
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=95.61 E-value=0.17 Score=56.34 Aligned_cols=246 Identities=15% Similarity=0.223 Sum_probs=123.6
Q ss_pred cEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeee--------------ccc-CC--c---cEEEEe
Q 014027 96 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV--------------ESL-KN--I---FVVQAA 155 (432)
Q Consensus 96 ~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v--------------~~~-~~--~---~I~~v~ 155 (432)
....|.......++.+.+|+||.--...... .. -.....|... +.+ .+ . -.++=.
T Consensus 490 ~A~~VgLs~drLFvADseGkLYsa~l~~~~~---~~--~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~ 564 (1774)
T PF11725_consen 490 QAQSVGLSNDRLFVADSEGKLYSADLPAAQD---NE--PKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDR 564 (1774)
T ss_pred hhhheeecCCeEEEEeCCCCEEecccccccC---CC--cceEeccccccccccccccccceeeccccCCCCeeeEEEecc
Confidence 6777887888899999999999765543321 10 1111112111 111 00 0 133335
Q ss_pred ecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCC-
Q 014027 156 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLG- 234 (432)
Q Consensus 156 ~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~- 234 (432)
.|..|+++|+++|.=|.-|||-...|=.....-...+ .....-.-+..+..-.++|. +| +|+.|-....
T Consensus 565 ~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~------~~p~~~~~ldl~r~G~v~L~---~G-~i~~wD~ttq~ 634 (1774)
T PF11725_consen 565 QGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKP------PAPAPHEILDLGRAGLVGLQ---DG-KIQYWDSTTQC 634 (1774)
T ss_pred CCceeeccccccCCccCCCCcccceeEeeccCCCCCC------CCCChHHhhccccccceeec---cc-eEeeecCcchh
Confidence 6777888888777777777776433322211110000 00001112455677788888 88 9999954221
Q ss_pred ---------CCcCCCCCCCCC--CceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcE
Q 014027 235 ---------GKLGHGSRTDEK--HPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPK 303 (432)
Q Consensus 235 ---------gqlg~~~~~~~~--~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~ 303 (432)
.||-+|-....+ .--++..+. ...+--+|+-|.+|.++++.--.-+..| .
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~-i~~~~~~~~~g~~~~~a~~~~r~~~e~G------------------~ 695 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLS-INQEHPSIAHGDNNVFALPQRRNKVELG------------------D 695 (1774)
T ss_pred hhhccCcCHHHHhccccCCceEecCCceeeee-cccCCCccccCCCcccccccccCCCCCC------------------c
Confidence 111111111110 000010000 0001113444444444443332222222 2
Q ss_pred EecccCCCcEEEEe-cCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeec
Q 014027 304 VVQALNDVKAIHVA-TGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 382 (432)
Q Consensus 304 ~i~~~~~~~i~~i~-~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~ 382 (432)
.+..+++..|..+| .+.++.++|++.|++-..= ..-.|+.++.. ..+..|..+++
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~---------------------k~g~p~~l~~~-gl~G~ik~l~l-- 751 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ---------------------KPGRPVPLSRP-GLSGEIKDLAL-- 751 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc---------------------CCCCCccCCCC-CCCcchhheee--
Confidence 34445554554444 4668889999999876521 11125555433 24678999999
Q ss_pred cccccc-eEEEEeCCCCEEEe
Q 014027 383 SIYWNA-HTFALTESGKLYAF 402 (432)
Q Consensus 383 ~~~G~~-~~~~lt~~G~v~~w 402 (432)
-.. +-+|++.+|++|.-
T Consensus 752 ---D~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 752 ---DEKQNLYALTSTGELFRL 769 (1774)
T ss_pred ---ccccceeEecCCCceeec
Confidence 444 55689999999963
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=95.36 E-value=2 Score=38.59 Aligned_cols=145 Identities=11% Similarity=0.108 Sum_probs=73.7
Q ss_pred EEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCC--CCcEEEE--EcCCCeEEEEecCCCEEEEeCCCCCCccCC
Q 014027 55 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQ--GIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYG 130 (432)
Q Consensus 55 ~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~--~~~i~~v--~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~ 130 (432)
.+-+|.+++..+.+.|..-+|=. -....|.|+..+. .++|..| .|-..-.+-=.+||.+-.|-.-.-
T Consensus 45 rLeiTpdk~~LAaa~~qhvRlyD---~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~------ 115 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQHVRLYD---LNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL------ 115 (311)
T ss_pred eEEEcCCcchhhhccCCeeEEEE---ccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCc------
Confidence 44556666666666554433211 0112343443332 2344444 333333444456677766653321
Q ss_pred CCCcccccCCeeecccCCccEEEE--eecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEE
Q 014027 131 VQGTKLVTSPQLVESLKNIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIA 208 (432)
Q Consensus 131 ~~~~~~~~~p~~v~~~~~~~I~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~ 208 (432)
.-+...... ..|..| .....+.+.=+.+|.|+.|-..++ .-.....| -.+..|.+++
T Consensus 116 -------~~qR~~~~~--spVn~vvlhpnQteLis~dqsg~irvWDl~~~------~c~~~liP------e~~~~i~sl~ 174 (311)
T KOG0315|consen 116 -------SCQRNYQHN--SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN------SCTHELIP------EDDTSIQSLT 174 (311)
T ss_pred -------ccchhccCC--CCcceEEecCCcceEEeecCCCcEEEEEccCC------ccccccCC------CCCcceeeEE
Confidence 111111111 223333 334556666788999999953331 11112222 2334588888
Q ss_pred ecccceeEEEeeCCCCEEEEEc
Q 014027 209 AGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 209 ~g~~~~~~l~~~~~G~~vy~~G 230 (432)
...+-++....++.| +.|+|-
T Consensus 175 v~~dgsml~a~nnkG-~cyvW~ 195 (311)
T KOG0315|consen 175 VMPDGSMLAAANNKG-NCYVWR 195 (311)
T ss_pred EcCCCcEEEEecCCc-cEEEEE
Confidence 888877777766688 999995
No 18
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.24 E-value=5.9 Score=38.67 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=87.7
Q ss_pred cEEEEeecCceE--EEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEE
Q 014027 150 FVVQAAIGNFFT--AVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227 (432)
Q Consensus 150 ~I~~v~~G~~~~--~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 227 (432)
+|..+++...-. ++=|..|+||.|--+.---|..- . ..-..|+.+....+-+.+++-.+|| .|.
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-------~------aHYQ~ITcL~fs~dgs~iiTgskDg-~V~ 148 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-------S------AHYQSITCLKFSDDGSHIITGSKDG-AVL 148 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-------H------hhccceeEEEEeCCCcEEEecCCCc-cEE
Confidence 456665554433 33457899999964432111100 0 1112388888888888888887799 999
Q ss_pred EEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCce--EEEE--eCCCCEEEEecCCCCcccCCCCCCccCcE
Q 014027 228 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH--AAVV--GQDGRVCTWGWGRYGCLGHGNEECESVPK 303 (432)
Q Consensus 228 ~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h--~~~l--t~~g~vy~wG~n~~gqlg~~~~~~~~~p~ 303 (432)
+|=--+. -.......|..+..+......|.++.+|..- +-++ ..|..+-+|--.. + .--.
T Consensus 149 vW~l~~l-----v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g-----~LLl 212 (476)
T KOG0646|consen 149 VWLLTDL-----VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------G-----VLLL 212 (476)
T ss_pred EEEEEee-----cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------c-----eeeE
Confidence 9942111 0111122555555566677788888877662 2222 3455555553211 1 1111
Q ss_pred EecccCCCcEEEEecCCCcEEEEecCCCEEEEe
Q 014027 304 VVQALNDVKAIHVATGDYTTFVVSEDGDVYSFG 336 (432)
Q Consensus 304 ~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G 336 (432)
.+.++...+.+-+.-+..+.++=+++|.||..-
T Consensus 213 ti~fp~si~av~lDpae~~~yiGt~~G~I~~~~ 245 (476)
T KOG0646|consen 213 TITFPSSIKAVALDPAERVVYIGTEEGKIFQNL 245 (476)
T ss_pred EEecCCcceeEEEcccccEEEecCCcceEEeee
Confidence 222223334455666777777778889888754
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.07 E-value=3.1 Score=41.73 Aligned_cols=108 Identities=20% Similarity=0.284 Sum_probs=68.4
Q ss_pred ecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCC
Q 014027 156 IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLG 234 (432)
Q Consensus 156 ~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~ 234 (432)
.|.....+|..+|++|. +-|.......-..-++. .....+++|++|. ....+++. +|.-+|--|-.++
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i--~~~t~L~qISagPtg~VwAvt~--nG~vf~R~GVsRq 258 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVI--CPYTDLSQISAGPTGVVWAVTE--NGAVFYREGVSRQ 258 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeec--CCCCccceEeecCcceEEEEee--CCcEEEEeccccc
Confidence 45555667888888872 12222221111111111 1122489999998 77888888 9956777887777
Q ss_pred CCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEE
Q 014027 235 GKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 282 (432)
Q Consensus 235 gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~ 282 (432)
.+.|..-. +..+|.... .++.|+-|....-+||.+|.+|.
T Consensus 259 Np~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwf 298 (705)
T KOG3669|consen 259 NPEGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWF 298 (705)
T ss_pred CCCCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEE
Confidence 76665433 334444332 37899999888889999999986
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.041 Score=58.70 Aligned_cols=136 Identities=15% Similarity=0.060 Sum_probs=91.5
Q ss_pred CccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCC--CCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCE
Q 014027 148 NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGH--HTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMA 225 (432)
Q Consensus 148 ~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~--~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~ 225 (432)
..+++.|.+-.+..++|..+|++|.|-|.+..-+-. ....+...|..-..-+.+.+|+.+++..-..-++|+ +| .
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~--ng-h 449 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATE--NG-H 449 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeec--CC-c
Confidence 346788888888889999999999999988544433 223344455555555788999999999988888998 99 9
Q ss_pred EEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcc
Q 014027 226 VYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCL 291 (432)
Q Consensus 226 vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gql 291 (432)
|.+|=+. .|.+-... ..-...+.....+..+++.-|-..|.++...|+-+|-||--.+.|-
T Consensus 450 lasWlDE----cgagV~fk-La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~es 510 (3015)
T KOG0943|consen 450 LASWLDE----CGAGVAFK-LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSES 510 (3015)
T ss_pred hhhHHhh----hhhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehhh
Confidence 9999432 12111111 0011111122244556666777888889999999999997655553
No 21
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.05 E-value=1.9 Score=48.70 Aligned_cols=250 Identities=15% Similarity=0.105 Sum_probs=119.7
Q ss_pred ceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCC
Q 014027 46 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFG 125 (432)
Q Consensus 46 ~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~g 125 (432)
++=..|..|++.|.+++.=|--|.|-...|=+.++.-...| . .+. .-.-+-.|..-.+.|.+ |+|+.|-....+
T Consensus 561 ikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~--~-~p~--~~~~ldl~r~G~v~L~~-G~i~~wD~ttq~ 634 (1774)
T PF11725_consen 561 IKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKP--P-APA--PHEILDLGRAGLVGLQD-GKIQYWDSTTQC 634 (1774)
T ss_pred EeccCCceeeccccccCCccCCCCcccceeEeeccCCCCCC--C-CCC--hHHhhccccccceeecc-ceEeeecCcchh
Confidence 33445666777776666666666665544433222111111 0 001 11112345566777774 999999876554
Q ss_pred CccCCCCCcccccC--CeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcc-cccccccccCCC
Q 014027 126 EAEYGVQGTKLVTS--PQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDV-EPHPLLGTLENI 202 (432)
Q Consensus 126 qlg~~~~~~~~~~~--p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~-~p~~i~~~~~~~ 202 (432)
.-..+..+...... --.-..+++.+|+.+.....|.-+.-.+..+|.- ....... .-..+.. +++.
T Consensus 635 W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~~~~a~----------~~~r~~~e~G~~l~G-l~~~ 703 (1774)
T PF11725_consen 635 WKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGDNNVFAL----------PQRRNKVELGDALEG-LEDR 703 (1774)
T ss_pred hhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCCCccccc----------ccccCCCCCCccccC-CCcC
Confidence 32222100000000 0000112333444444333332222222222210 0000000 0112222 4555
Q ss_pred CEEEEEe-cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCce-EEEEeCCCCE
Q 014027 203 PVVQIAA-GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWH-AAVVGQDGRV 280 (432)
Q Consensus 203 ~i~~i~~-g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h-~~~lt~~g~v 280 (432)
.|..++. +.++.++|++ .| +|-.. . ....|..+.. +...-+|++|+.-..| .+|+|++|+|
T Consensus 704 ~i~a~Avv~~~~fvald~--qg-~lt~h-----------~--k~g~p~~l~~-~gl~G~ik~l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 704 VITAFAVVNDNKFVALDD--QG-DLTAH-----------Q--KPGRPVPLSR-PGLSGEIKDLALDEKQNLYALTSTGEL 766 (1774)
T ss_pred cceeEEEEcCCceEEecc--CC-ccccc-----------c--CCCCCccCCC-CCCCcchhheeeccccceeEecCCCce
Confidence 6766665 5566777775 66 54432 1 1112444432 1234579999999986 4589999999
Q ss_pred EEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCC
Q 014027 281 CTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDG 330 (432)
Q Consensus 281 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g 330 (432)
|..=.-.. |-+.........-+++..+.+.++..+....+|.+.+.-++
T Consensus 767 f~~~k~~W-Q~~~~~~~~~~~W~~v~lP~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 767 FRLPKEAW-QGNAEGDQMAAKWQKVALPDEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred eecCHHHh-hCcccCCccccCceeccCCCCCchhhhhcCCCCceEEEecC
Confidence 97432111 11111111123344555557778999999999999887665
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.38 E-value=19 Score=32.56 Aligned_cols=143 Identities=11% Similarity=0.054 Sum_probs=74.9
Q ss_pred EcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCce--EEEEeCCCCEEEEEecCC
Q 014027 101 AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFF--TAVLSREGRVYTFSWGND 178 (432)
Q Consensus 101 ~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~--~~~lt~~G~vy~~G~n~~ 178 (432)
.-...+.+.=+.+|.|++|--...- ......|.. +..|.+++...+- .++++++|++|+|-.-.
T Consensus 133 hpnQteLis~dqsg~irvWDl~~~~--------c~~~liPe~-----~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~- 198 (311)
T KOG0315|consen 133 HPNQTELISGDQSGNIRVWDLGENS--------CTHELIPED-----DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN- 198 (311)
T ss_pred cCCcceEEeecCCCcEEEEEccCCc--------cccccCCCC-----CcceeeEEEcCCCcEEEEecCCccEEEEEccC-
Confidence 3455677777889999999744321 111222322 2346666555554 45688999999995332
Q ss_pred CcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccC
Q 014027 179 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLN 258 (432)
Q Consensus 179 gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~ 258 (432)
........|..... ..+..|.+.--..+.....+...|. +++.|-...+ .+++
T Consensus 199 -----~~~~s~l~P~~k~~-ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~~~~--------------~kle------ 251 (311)
T KOG0315|consen 199 -----HQTASELEPVHKFQ-AHNGHILRCLLSPDVKYLATCSSDK-TVKIWNTDDF--------------FKLE------ 251 (311)
T ss_pred -----CCccccceEhhhee-cccceEEEEEECCCCcEEEeecCCc-eEEEEecCCc--------------eeeE------
Confidence 22222333333222 2233355444444444444443466 7777742211 1111
Q ss_pred CccEEEEcC--CceEEEEeCCCCEEEEecCC
Q 014027 259 LQPVVVAAG--AWHAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 259 ~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~ 287 (432)
..+.++ ..--++.+.||+..+.|.+.
T Consensus 252 ---~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 252 ---LVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred ---EEeecCCceEEeeeeccCccEEEecCCC
Confidence 134455 44556777888877777654
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=87.61 E-value=0.098 Score=56.04 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeee-cccCCccEEEEeecCceEEEEeCCCCEEEE
Q 014027 95 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV-ESLKNIFVVQAAIGNFFTAVLSREGRVYTF 173 (432)
Q Consensus 95 ~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v-~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~ 173 (432)
-+++.|.+-.+..++|..+|++|.|-....--+............|..- -.+.+.+|+.+++..-..-++|++|.|-+|
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasW 453 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASW 453 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhH
Confidence 3788888888889999999999999987654433322222334444322 235678999999999999999999999988
Q ss_pred EecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCC
Q 014027 174 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK 236 (432)
Q Consensus 174 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq 236 (432)
-.. +|.+-...............+..+++..|...|.++..+ +. .||=||--.+.+
T Consensus 454 lDE----cgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~--dn-iihWcGiVPf~e 509 (3015)
T KOG0943|consen 454 LDE----CGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLE--DN-IIHWCGIVPFSE 509 (3015)
T ss_pred Hhh----hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhh--hc-eeeEEeeeeehh
Confidence 422 222211111111111122455667788888889988887 77 999999654433
No 24
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.24 E-value=3.6 Score=36.85 Aligned_cols=27 Identities=7% Similarity=0.178 Sum_probs=24.2
Q ss_pred cEEEEecCCCcEEEEecCCCEEEEeCC
Q 014027 312 KAIHVATGDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 312 ~i~~i~~G~~~s~~lt~~g~vy~~G~n 338 (432)
+++.+.|-..+-++||++|.+|+|--.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 678899999999999999999999744
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.12 E-value=27 Score=31.03 Aligned_cols=107 Identities=9% Similarity=-0.003 Sum_probs=50.6
Q ss_pred cccceEecCC--CeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC--CeEEEEecCCCEEE
Q 014027 43 RENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYA 118 (432)
Q Consensus 43 ~~i~~i~~G~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~vy~ 118 (432)
.+|..+..-. ...++...+|.++.|-..... ....+. .....+..+.... ...++...+|.|+.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3444444333 444455568888888543211 011111 1112333443332 34555666888888
Q ss_pred EeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc-eEEEEeC-CCCEEEEEe
Q 014027 119 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSR-EGRVYTFSW 175 (432)
Q Consensus 119 ~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~-~~~~lt~-~G~vy~~G~ 175 (432)
|-..... ....+. .....|..+..... ..++... +|.|+.|-.
T Consensus 78 ~~~~~~~-------------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 78 WDLETGE-------------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEcCccc-------------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 8654320 111111 11224666655543 3344444 888888743
No 26
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=82.86 E-value=39 Score=31.18 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=61.3
Q ss_pred ccceEecCC---CeEEEEecCCcEEEEeCC-CCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEE
Q 014027 44 ENSQAIAGP---GHSIAVTSKGVVYSFGSN-SSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAF 119 (432)
Q Consensus 44 ~i~~i~~G~---~~~~~l~~~g~v~~~G~n-~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~ 119 (432)
+++.+..|. -|.+++..||..|..-.. .-++++....+....|.+. +-+-+.-.+.+++.+|+||..
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~---------~~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL---------EHADANLETAVFDPWGNLWFT 164 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc---------ccCCCcccceeeCCCccEEEe
Confidence 566666554 378899999999998554 2333332222222223222 223344568889999999999
Q ss_pred eCC-CCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEE
Q 014027 120 GKD-SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTF 173 (432)
Q Consensus 120 G~n-~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~ 173 (432)
|++ .+|.|.......+....|+ -+.-..++.|-||+||.-
T Consensus 165 ~q~G~yGrLdPa~~~i~vfpaPq--------------G~gpyGi~atpdGsvwya 205 (353)
T COG4257 165 GQIGAYGRLDPARNVISVFPAPQ--------------GGGPYGICATPDGSVWYA 205 (353)
T ss_pred eccccceecCcccCceeeeccCC--------------CCCCcceEECCCCcEEEE
Confidence 985 3444433332222222221 122356778999999954
No 27
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=81.53 E-value=74 Score=33.40 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred ecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCcc
Q 014027 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAE 128 (432)
Q Consensus 49 ~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg 128 (432)
+.|..|-+++ .||.|-.|..+.- + . + ..+|..|+.....++++|.-++-.-++. -|.
T Consensus 139 SVGsQHDMIV----nv~dWr~N~~~as-----n------k---i-ss~Vsav~fsEdgSYfvT~gnrHvk~wy---l~~- 195 (1080)
T KOG1408|consen 139 SVGSQHDMIV----NVNDWRVNSSGAS-----N------K---I-SSVVSAVAFSEDGSYFVTSGNRHVKLWY---LQI- 195 (1080)
T ss_pred eeccccceEE----Ehhhhhhcccccc-----c------c---c-ceeEEEEEEccCCceeeeeeeeeEEEEE---eec-
Confidence 4455665566 4677766654310 0 0 1 1256777777777777777654222221 111
Q ss_pred CCCCCcccccCCeeeccc---CCccEEEEeecCc----eEEEEeCCCCEEEE
Q 014027 129 YGVQGTKLVTSPQLVESL---KNIFVVQAAIGNF----FTAVLSREGRVYTF 173 (432)
Q Consensus 129 ~~~~~~~~~~~p~~v~~~---~~~~I~~v~~G~~----~~~~lt~~G~vy~~ 173 (432)
+......++.|-+-..+ ..-....|+||.. .+++||..|.|.-|
T Consensus 196 -~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEF 246 (1080)
T KOG1408|consen 196 -QSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEF 246 (1080)
T ss_pred -cccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeee
Confidence 11112233333333333 3334778999998 89999999999855
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.33 E-value=55 Score=31.87 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=47.1
Q ss_pred CCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEE--eCC
Q 014027 200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVV--GQD 277 (432)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~l--t~~ 277 (432)
...+|..++-..+.-++|+.-.+. ++.-|-.. ....+.+....+....-|.+-+.|.+-.++. ++|
T Consensus 394 e~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~-----------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 394 EEQPITSFSISKDGKLALVNLQDQ-EIHLWDLE-----------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred ccCceeEEEEcCCCcEEEEEcccC-eeEEeecc-----------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 455688888888877887765566 88888421 1111222222222233456667777767666 689
Q ss_pred CCEEEEecC
Q 014027 278 GRVCTWGWG 286 (432)
Q Consensus 278 g~vy~wG~n 286 (432)
++||.|-.-
T Consensus 462 ~kvyIWhr~ 470 (519)
T KOG0293|consen 462 SKVYIWHRI 470 (519)
T ss_pred ceEEEEEcc
Confidence 999999763
No 29
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=80.61 E-value=63 Score=32.02 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=41.3
Q ss_pred CcEEEEEc-CCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeee--cccCCccEEEEeecCceEEEEeCCCCEE
Q 014027 95 IRIIQAAA-GAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLV--ESLKNIFVVQAAIGNFFTAVLSREGRVY 171 (432)
Q Consensus 95 ~~i~~v~~-g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v--~~~~~~~I~~v~~G~~~~~~lt~~G~vy 171 (432)
.+|+.+.- -....++|.++|.+...- -+|.. ....+..+ ....+.+|-.+..+.+-.++||.++++|
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~--------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~ 150 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF--------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFY 150 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce--------eechhhhccccCcccccccccccCCCCEEEECCCCeEE
Confidence 36776654 355788999999988763 22322 11112222 1222334445566666688899999999
Q ss_pred EE
Q 014027 172 TF 173 (432)
Q Consensus 172 ~~ 173 (432)
..
T Consensus 151 ~v 152 (410)
T PF04841_consen 151 VV 152 (410)
T ss_pred EE
Confidence 66
No 30
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.53 E-value=9.7 Score=34.11 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCeEEEEecCCCEEEEeCCC
Q 014027 95 IRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 95 ~~i~~v~~g~~~~~~lt~~g~vy~~G~n~ 123 (432)
.+++.+.|...+.++||++|.+|+|--..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 37888999999999999999999997543
No 31
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=80.40 E-value=61 Score=31.94 Aligned_cols=138 Identities=13% Similarity=0.073 Sum_probs=67.7
Q ss_pred cccccCcCCC--CcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEE
Q 014027 85 RPRPIRSLQG--IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTA 162 (432)
Q Consensus 85 ~p~~i~~~~~--~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~ 162 (432)
.|.++..+++ ..|.++.+|..- .+.+||+.+......+=.-. .-..-..+.+....+-+-|.-+..+.+
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS----~g~LLlti~fp~si~av~lDpae~~~y 233 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLS----LGVLLLTITFPSSIKAVALDPAERVVY 233 (476)
T ss_pred CccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEec----cceeeEEEecCCcceeEEEcccccEEE
Confidence 4555555543 478888887664 34455555443221110000 000111122222333455566778888
Q ss_pred EEeCCCCEEEEEecC-CCcC-CCCCCCCccccccccc---ccCCCCEEEEEecccceeEEEeeCCCCEEEEEccC
Q 014027 163 VLSREGRVYTFSWGN-DARL-GHHTEPNDVEPHPLLG---TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCG 232 (432)
Q Consensus 163 ~lt~~G~vy~~G~n~-~gql-g~~~~~~~~~p~~i~~---~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n 232 (432)
+=+++|.+|..-... .||- +.........-..+.. -.....|..++-..+-++.+.=+.|| +|-.|-..
T Consensus 234 iGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg-~VcvWdi~ 307 (476)
T KOG0646|consen 234 IGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG-KVCVWDIY 307 (476)
T ss_pred ecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-CEEEEecc
Confidence 889999998442221 1110 0000000111111111 11224577888888888888877788 88888543
No 32
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=77.27 E-value=1.2e+02 Score=33.16 Aligned_cols=216 Identities=10% Similarity=0.033 Sum_probs=102.8
Q ss_pred EcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec-----CceEEEEeCCCCEEEEEe
Q 014027 101 AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLSREGRVYTFSW 175 (432)
Q Consensus 101 ~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G-----~~~~~~lt~~G~vy~~G~ 175 (432)
+...++.+++|+.|++|..-.. ++........-......+....+.+|+.+.+- ....+++|++|.+.-.-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l 619 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSL 619 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEh
Confidence 4456678999999999998322 22222111111111122333345667776652 235678899998775543
Q ss_pred cCCCcCCCCCCCCcccccccccccCCCCEEEEEe--cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeeh
Q 014027 176 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ 253 (432)
Q Consensus 176 n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~ 253 (432)
+.+-.... .--..+.. ..+..++.+.. ..++.+++|+ +| .+|.+-...-...+.... ......
T Consensus 620 ~~~~~~~r------~G~~aikl-ke~D~lv~v~~~~~~d~lll~Ts--~G-r~~r~~v~eIp~~gr~~~-----Gv~~i~ 684 (800)
T TIGR01063 620 TEFSNIRS------NGIIAIKL-DDGDELISVRLTSGDDEVMLGSK--NG-KAVRFPEEDVRPMGRAAR-----GVRGIK 684 (800)
T ss_pred HHhhhhcc------CCcccccC-CCCCEEEEEEEeCCCCEEEEEEC--CC-cEEEEEhhhcCCcCCCCC-----Ceeccc
Confidence 33211000 00000000 12233443332 3355777776 88 888875443333332221 111111
Q ss_pred hhccCCccEEEEc--CCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccC-CCcEEE--EecCCCcEEEEec
Q 014027 254 FQLLNLQPVVVAA--GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN-DVKAIH--VATGDYTTFVVSE 328 (432)
Q Consensus 254 ~~~~~~~i~~i~~--G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-~~~i~~--i~~G~~~s~~lt~ 328 (432)
+. .+.+|+.+.. ...+.+++|++|.+.-.=..++-....+. ..-..+.... +..++. +....+..+++|+
T Consensus 685 L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~----kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~ 759 (800)
T TIGR01063 685 LK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRGG----KGVKSIKITDRNGQVVGAIAVDDDDELMLITS 759 (800)
T ss_pred CC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHccccCCCC----cceEEEEccCCCCeEEEEEEecCCCeEEEEec
Confidence 21 3445655544 23367788899877766544432222111 0111111111 122322 2234455778888
Q ss_pred CCCEEEEeCCC
Q 014027 329 DGDVYSFGCGE 339 (432)
Q Consensus 329 ~g~vy~~G~n~ 339 (432)
+|.+..+-.+.
T Consensus 760 ~G~~lrf~~~e 770 (800)
T TIGR01063 760 AGKLIRTSVQD 770 (800)
T ss_pred CCeEEEeeHhh
Confidence 89888776543
No 33
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=77.03 E-value=1.2e+02 Score=33.11 Aligned_cols=214 Identities=12% Similarity=0.040 Sum_probs=102.3
Q ss_pred ecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEcC-----CCeEEEEecCCCEEEEeC
Q 014027 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFGK 121 (432)
Q Consensus 49 ~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~vy~~G~ 121 (432)
+...++.+++|++|++|..=...--..+. ...-.| ..++...+.+|+.+.+- ....+++|.+|.+--.-.
T Consensus 543 ~~t~d~LllfTs~Grv~~l~~~~IP~~~r---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l 619 (800)
T TIGR01063 543 ASTHDYLLFFTNRGKVYWLKVYQIPEASR---TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSL 619 (800)
T ss_pred ecCCCeEEEEeCCCcEEEEEhhhCcCCCc---CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEh
Confidence 34556688999999999993322111111 111111 12333456678777652 235788899988776544
Q ss_pred CCCCCccCCCCCcccccCCee-ecccCCccEEEEe--ecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccc
Q 014027 122 DSFGEAEYGVQGTKLVTSPQL-VESLKNIFVVQAA--IGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT 198 (432)
Q Consensus 122 n~~gqlg~~~~~~~~~~~p~~-v~~~~~~~I~~v~--~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~ 198 (432)
+++-... ..... +..-.+..++.+. ...++.+++|++|++|.+-...-...+...... .....
T Consensus 620 ~~~~~~~---------r~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv-----~~i~L 685 (800)
T TIGR01063 620 TEFSNIR---------SNGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGV-----RGIKL 685 (800)
T ss_pred HHhhhhc---------cCCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCe-----ecccC
Confidence 3331100 00000 1111233455433 334568899999999988665543333322211 11111
Q ss_pred cCCCCEEEEEecc--cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEE--EcCCceEEEE
Q 014027 199 LENIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVV 274 (432)
Q Consensus 199 ~~~~~i~~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G~~h~~~l 274 (432)
..+.+|+.+..-. .+.+++|+ +| .+.-.--..+-...++ ........+...+.+++.+ ....+..+++
T Consensus 686 ~~~E~Vv~~~~v~~~~~ll~vT~--~G-~~Kr~~l~e~~~~~R~-----~kGv~~ikl~~~~d~lv~~~~v~~~~~v~li 757 (800)
T TIGR01063 686 KNEDFVVSLLVVSEESYLLIVTE--NG-YGKRTSIEEYRETSRG-----GKGVKSIKITDRNGQVVGAIAVDDDDELMLI 757 (800)
T ss_pred CCCCEEEEEEEeccccEEEEEec--CC-cEEEEEHHHccccCCC-----CcceEEEEccCCCCeEEEEEEecCCCeEEEE
Confidence 3455676655432 34556665 66 5554422211110000 0111111111111233322 2234467888
Q ss_pred eCCCCEEEEecCC
Q 014027 275 GQDGRVCTWGWGR 287 (432)
Q Consensus 275 t~~g~vy~wG~n~ 287 (432)
|++|.+..+-.++
T Consensus 758 T~~G~~lrf~~~e 770 (800)
T TIGR01063 758 TSAGKLIRTSVQD 770 (800)
T ss_pred ecCCeEEEeeHhh
Confidence 8888887776544
No 34
>PRK05560 DNA gyrase subunit A; Validated
Probab=74.79 E-value=1.3e+02 Score=32.70 Aligned_cols=260 Identities=11% Similarity=0.030 Sum_probs=121.2
Q ss_pred CCeEEEEecCCcEEEEeCCCCC-CcCCCCCCCcccccccCcCCCCcEEEE--EcCCCeEEEEecCCCEEEEeCCCCCCcc
Q 014027 52 PGHSIAVTSKGVVYSFGSNSSG-QLGHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAE 128 (432)
Q Consensus 52 ~~~~~~l~~~g~v~~~G~n~~g-qlG~~~~~~~~~p~~i~~~~~~~i~~v--~~g~~~~~~lt~~g~vy~~G~n~~gqlg 128 (432)
..-.++++++|.+--.-...+- |-..+ .....+..-.+..+..+ +......+++|+.|++|..-... +.
T Consensus 498 E~v~vllS~~GyIKri~~~~~~~~~~~~-----~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~---iP 569 (805)
T PRK05560 498 EDVVVTLTHGGYIKRTPLDEYRAQRRGG-----KGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYE---IP 569 (805)
T ss_pred CCEEEEEeCCCEEEEcchhhhhhhcccC-----CCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhh---Cc
Confidence 4567788888877655322211 00000 00111111122334433 45566789999999999886542 22
Q ss_pred CCCCCcccccCCeeecccCCccEEEEeecC-----ceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCC
Q 014027 129 YGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (432)
Q Consensus 129 ~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 203 (432)
.......-......+....+.+|+.+.+-. ...+++|++|.+.-.-...+-....+ -...+.. ..+..
T Consensus 570 ~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~------G~~~ikL-ke~D~ 642 (805)
T PRK05560 570 EASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSN------GIIAINL-DEGDE 642 (805)
T ss_pred CCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccC------Cceeecc-CCCCE
Confidence 221111111111122333466777776644 35688999997764433322110000 0000111 12333
Q ss_pred EEEEEe--cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC---ceEEEEeCCC
Q 014027 204 VVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDG 278 (432)
Q Consensus 204 i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~g 278 (432)
++.+.. ..++.+++|+ +| .+|.+-...--..+.... ...+..+ ..+.+|+.+..-. .+.+++|+.|
T Consensus 643 lv~v~~~~~~d~lll~T~--~G-r~~r~~~~eIp~~gr~~~-----Gv~~i~L-~~~E~Vv~~~~v~~~~~~il~vTk~G 713 (805)
T PRK05560 643 LIGVRLTDGDDDILLATK--NG-KAIRFPESDVRPMGRTAR-----GVRGIKL-REGDEVVSMDVVREDSQEILTVTENG 713 (805)
T ss_pred EEEEEEeCCCCEEEEEEC--CC-cEEEEEhhhcCccCcccC-----CcccccC-CCCCEEEEEEEEcCCCcEEEEEEeCC
Confidence 443333 3455777776 88 888875433222222111 1111222 2344566554432 2677888888
Q ss_pred CEEEEecCCCCcccCCCCCCccCcEEecccC-CCcEEE--EecCCCcEEEEecCCCEEEEeCCC
Q 014027 279 RVCTWGWGRYGCLGHGNEECESVPKVVQALN-DVKAIH--VATGDYTTFVVSEDGDVYSFGCGE 339 (432)
Q Consensus 279 ~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~-~~~i~~--i~~G~~~s~~lt~~g~vy~~G~n~ 339 (432)
.+.-.=.+++-....+. ..-..+.... +..++. +..+.+..+++|.+|++..+-.+.
T Consensus 714 ~iKr~~l~e~~~~~R~~----kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 714 YGKRTPVSEYRLQGRGG----KGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred eEEEEEHHHhhccCCCC----CcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 77665443332211110 0011111111 123332 233555678889999888876554
No 35
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=74.01 E-value=69 Score=29.01 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=47.4
Q ss_pred CCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCC-cCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCC
Q 014027 200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGK-LGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 278 (432)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gq-lg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g 278 (432)
.+.+|-.++.-.+|.+.-- +| .||.|=.+..-. ++.........|......+-+.+.-..+.--.+..++---|+
T Consensus 61 hdgpiy~~~f~d~~Lls~g---dG-~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~ 136 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLSGG---DG-LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG 136 (325)
T ss_pred cCCCeeeeeeehhheeecc---Cc-eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe
Confidence 4456777777777766554 88 999999887765 666666666667666443323322222322233333333456
Q ss_pred CEEEEe
Q 014027 279 RVCTWG 284 (432)
Q Consensus 279 ~vy~wG 284 (432)
.+|+|-
T Consensus 137 ~~y~~d 142 (325)
T KOG0649|consen 137 VIYQVD 142 (325)
T ss_pred EEEEEE
Confidence 677664
No 36
>PRK05560 DNA gyrase subunit A; Validated
Probab=73.48 E-value=1.4e+02 Score=32.47 Aligned_cols=216 Identities=12% Similarity=0.062 Sum_probs=106.0
Q ss_pred ecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEcCC-----CeEEEEecCCCEEEEeC
Q 014027 49 IAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFGK 121 (432)
Q Consensus 49 ~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g~vy~~G~ 121 (432)
+....+.+++|+.|++|..=...--..+. ...-.| ..+....+.+|+.+.+-. ...+++|++|.+--.-.
T Consensus 545 ~~t~d~LllfTs~Grv~~l~v~~iP~~~~---~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l 621 (805)
T PRK05560 545 ASTHDTLLFFTNRGRVYRLKVYEIPEASR---TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSL 621 (805)
T ss_pred ecCCCeEEEEecCCeEEEEEhhhCcCCCc---CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEh
Confidence 34556688999999999996553221111 111112 123334566788877644 35788999998776543
Q ss_pred CCCCCccCCCCCcccccCCeeecccCCccEEEEee--cCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014027 122 DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (432)
Q Consensus 122 n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 199 (432)
+++-....+ -..-+..-++..++.+.. ..++.+++|++|++|.+-...-...+..... .++....
T Consensus 622 ~~~~~~~r~--------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~G-----v~~i~L~ 688 (805)
T PRK05560 622 SEFSNIRSN--------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARG-----VRGIKLR 688 (805)
T ss_pred HHhhhcccC--------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCC-----cccccCC
Confidence 332110000 001111112344554433 3456889999999998755443333222211 1111113
Q ss_pred CCCCEEEEEeccc---ceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEE--EcCCceEEEE
Q 014027 200 ENIPVVQIAAGYC---YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVV 274 (432)
Q Consensus 200 ~~~~i~~i~~g~~---~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G~~h~~~l 274 (432)
.+.+|+.+.+... +.+++|+ .| .+.-.--+.+-....+ ........+...+.+++.+ ..+.+..+++
T Consensus 689 ~~E~Vv~~~~v~~~~~~il~vTk--~G-~iKr~~l~e~~~~~R~-----~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~ 760 (805)
T PRK05560 689 EGDEVVSMDVVREDSQEILTVTE--NG-YGKRTPVSEYRLQGRG-----GKGVITIKITEKNGKLVGALPVDDDDEIMLI 760 (805)
T ss_pred CCCEEEEEEEEcCCCcEEEEEEe--CC-eEEEEEHHHhhccCCC-----CCcEEeeeccCCCCeEEEEEEecCCCeEEEE
Confidence 4556766655432 4566666 67 5554422111110000 0111111111112233332 3344568888
Q ss_pred eCCCCEEEEecCCC
Q 014027 275 GQDGRVCTWGWGRY 288 (432)
Q Consensus 275 t~~g~vy~wG~n~~ 288 (432)
|++|++.-+-.++.
T Consensus 761 T~~G~~lrf~~~eI 774 (805)
T PRK05560 761 TDSGKLIRTRVSEI 774 (805)
T ss_pred ecCCeEEEEEHHHC
Confidence 99998887765543
No 37
>PLN02153 epithiospecifier protein
Probab=73.28 E-value=88 Score=29.91 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=12.1
Q ss_pred CcEEEEecCCCEEEEeCC
Q 014027 321 YTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 321 ~~s~~lt~~g~vy~~G~n 338 (432)
.|++++. +++||++|-.
T Consensus 244 ~~~~~~~-~~~iyv~GG~ 260 (341)
T PLN02153 244 VFAHAVV-GKYIIIFGGE 260 (341)
T ss_pred eeeeEEE-CCEEEEECcc
Confidence 4555544 5899999974
No 38
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=69.18 E-value=1.2e+02 Score=29.82 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=45.7
Q ss_pred CcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEE--eCCCC
Q 014027 321 YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFAL--TESGK 398 (432)
Q Consensus 321 ~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~l--t~~G~ 398 (432)
.+++++-.||-+|+-|.-+ +++- .-+...+..+..++.-..+|+.|+. +.+...+. .+|+.
T Consensus 350 ~ts~~fHpDgLifgtgt~d-~~vk-----------iwdlks~~~~a~Fpght~~vk~i~F-----sENGY~Lat~add~~ 412 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-GVVK-----------IWDLKSQTNVAKFPGHTGPVKAISF-----SENGYWLATAADDGS 412 (506)
T ss_pred eEEeeEcCCceEEeccCCC-ceEE-----------EEEcCCccccccCCCCCCceeEEEe-----ccCceEEEEEecCCe
Confidence 7888899999999988532 2211 2223345555556555678999999 77766655 46778
Q ss_pred EEEecCC
Q 014027 399 LYAFGAG 405 (432)
Q Consensus 399 v~~wG~n 405 (432)
|..|-.-
T Consensus 413 V~lwDLR 419 (506)
T KOG0289|consen 413 VKLWDLR 419 (506)
T ss_pred EEEEEeh
Confidence 9999754
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=67.37 E-value=88 Score=27.55 Aligned_cols=108 Identities=9% Similarity=-0.077 Sum_probs=51.6
Q ss_pred cEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCEE
Q 014027 96 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~vy 171 (432)
.|..++... ...++...+|.++.|-..... ...... .....+..+..... ..++...+|.|+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-------------~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-------------cEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 455555443 445555568899888644221 001111 11222334444333 455566689998
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEcc
Q 014027 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (432)
.|-..... ....+. .....|..+.......++++...+| .|+.|-.
T Consensus 77 i~~~~~~~-----------~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~ 122 (289)
T cd00200 77 LWDLETGE-----------CVRTLT--GHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDV 122 (289)
T ss_pred EEEcCccc-----------ceEEEe--ccCCcEEEEEEcCCCCEEEEecCCC-eEEEEEC
Confidence 88543210 011111 1122466666555444444443366 8888853
No 40
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.06 E-value=77 Score=29.38 Aligned_cols=140 Identities=18% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC---CeEEEEecCCCEEEEeCCCCCCc
Q 014027 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEA 127 (432)
Q Consensus 51 G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~---~~~~~lt~~g~vy~~G~n~~gql 127 (432)
+.-|.++...||.||.-++.. |.+|. .+ | ..-+++.+..|. -|.+++..||..|.+-... +.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~-gaiGh--Ld----P------~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~ 127 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGT-GAIGH--LD----P------ATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIG 127 (353)
T ss_pred CCccccccCCCCceEEecCcc-cccee--cC----C------CCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeE
Confidence 445677888999999876543 22332 11 1 111344444332 3788888888888875442 111
Q ss_pred cCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecC-CCcCCCCCCCCcccccccccccCCCCEEE
Q 014027 128 EYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGN-DARLGHHTEPNDVEPHPLLGTLENIPVVQ 206 (432)
Q Consensus 128 g~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~-~gqlg~~~~~~~~~p~~i~~~~~~~~i~~ 206 (432)
-.....-+....|.. .+.+-++=.+.+++..|.||.-|.+- +|.|-.........|.+.
T Consensus 128 R~dpkt~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------- 187 (353)
T COG4257 128 RLDPKTLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------- 187 (353)
T ss_pred EecCcccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------
Confidence 111111122222211 22334555678899999999888643 554444333333333221
Q ss_pred EEecccceeEEEeeCCCCEEEEE
Q 014027 207 IAAGYCYLLALACQPSGMAVYSV 229 (432)
Q Consensus 207 i~~g~~~~~~l~~~~~G~~vy~~ 229 (432)
-+.-+-++.+- +| +||.-
T Consensus 188 --G~gpyGi~atp--dG-svwya 205 (353)
T COG4257 188 --GGGPYGICATP--DG-SVWYA 205 (353)
T ss_pred --CCCCcceEECC--CC-cEEEE
Confidence 12345567776 89 88875
No 41
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=66.70 E-value=14 Score=21.99 Aligned_cols=24 Identities=17% Similarity=0.466 Sum_probs=21.3
Q ss_pred cEEEEEcCC-CeEEEEecCCCEEEE
Q 014027 96 RIIQAAAGA-GRTMLISDAGQVYAF 119 (432)
Q Consensus 96 ~i~~v~~g~-~~~~~lt~~g~vy~~ 119 (432)
.+++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 799999999 888899999999964
No 42
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=66.04 E-value=13 Score=22.10 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.2
Q ss_pred cEEEEecCC-CcEEEEecCCCEEEE
Q 014027 312 KAIHVATGD-YTTFVVSEDGDVYSF 335 (432)
Q Consensus 312 ~i~~i~~G~-~~s~~lt~~g~vy~~ 335 (432)
++++|++|. ....+++.+|.||..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 789999999 888999999999863
No 43
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.87 E-value=2.7e+02 Score=31.61 Aligned_cols=217 Identities=12% Similarity=0.046 Sum_probs=107.1
Q ss_pred EEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccC-CccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCC
Q 014027 107 TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK-NIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 185 (432)
Q Consensus 107 ~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~-~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 185 (432)
-+.+|.|+++|.|--++.+++..-+.- +....-..+-.++ +..+-. =.|.++|..--+|+..|-...-..+...
T Consensus 92 RaWiTiDn~L~lWny~~~~e~~~~d~~-shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 92 RAWITIDNNLFLWNYESDNELAEYDGL-SHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred ceEEEeCCeEEEEEcCCCCccccccch-hhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCccc
Confidence 466999999999998876665433211 1111111111111 111111 2588888888888888865432222111
Q ss_pred CCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEE----EEccCCCCCcCCCC-----CCCCCCceeeehhh-
Q 014027 186 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY----SVGCGLGGKLGHGS-----RTDEKHPRLIEQFQ- 255 (432)
Q Consensus 186 ~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy----~~G~n~~gqlg~~~-----~~~~~~p~~~~~~~- 255 (432)
.. ...+....++..|..|++..+--++++-. +| .|| ..+++.+++--..- ......|. +..++
T Consensus 167 ~f----~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs-~~~~~~ 239 (1311)
T KOG1900|consen 167 IF----NTSFKISVDGVSVNCITYTENGRIFFAGR-DG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS-LLSVPG 239 (1311)
T ss_pred cc----ccceeeecCCceEEEEEeccCCcEEEeec-CC-CEEEEEEeccCchhhcccccccCchhHHHHhhhh-hhcCCC
Confidence 11 11122334555677777666666666621 44 433 33444444411110 11123344 22222
Q ss_pred ccCCccEEEEcCCceEE--EEeCCCCEEEEecCCCCcccCCCC-----------CCccCcEEecccCCCcEEEEe-----
Q 014027 256 LLNLQPVVVAAGAWHAA--VVGQDGRVCTWGWGRYGCLGHGNE-----------ECESVPKVVQALNDVKAIHVA----- 317 (432)
Q Consensus 256 ~~~~~i~~i~~G~~h~~--~lt~~g~vy~wG~n~~gqlg~~~~-----------~~~~~p~~i~~~~~~~i~~i~----- 317 (432)
.....|.+|+-+....+ ++++.|.|=+|=-...|+-+.-.- .....|..-+ .-.+|++|+
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s--~f~~IvsI~~l~~~ 317 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDS--VFFSIVSISPLSAS 317 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCc--ccceeEEecccCcc
Confidence 23457888988887654 567788877776555444432110 0000110000 111344443
Q ss_pred -cCCCcEEEEecCC-CEEEEeC
Q 014027 318 -TGDYTTFVVSEDG-DVYSFGC 337 (432)
Q Consensus 318 -~G~~~s~~lt~~g-~vy~~G~ 337 (432)
.-+-|-+|+|..| ++|.=|.
T Consensus 318 es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 318 ESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccceeEEEEecCCeEEEEecc
Confidence 3457889999998 5666553
No 44
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=62.33 E-value=1e+02 Score=32.03 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=34.2
Q ss_pred EecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCC
Q 014027 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 48 i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~ 123 (432)
......+..+..-+|.||+.|--+.|..-..+ ...+.|..-. -..+-..........+..-+|.||+.|--+
T Consensus 319 m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~-ve~YD~~~~~---W~~~a~M~~~R~~~~v~~l~g~iYavGG~d 390 (571)
T KOG4441|consen 319 MPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSS-VERYDPRTNQ---WTPVAPMNTKRSDFGVAVLDGKLYAVGGFD 390 (571)
T ss_pred CCcccccccEEEECCEEEEEccccCCCcccce-EEEecCCCCc---eeccCCccCccccceeEEECCEEEEEeccc
Confidence 33444566666677899999965542211111 1111111110 001112222223344445568999999654
No 45
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=62.07 E-value=2.4e+02 Score=30.63 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=38.1
Q ss_pred cCceEEEEeCCCC-EEEEEecCCCcCCCCCCCCc-ccccccccccCCCCEEEEEecccceeEEEeeCCC-CEEEEEccC
Q 014027 157 GNFFTAVLSREGR-VYTFSWGNDARLGHHTEPND-VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSG-MAVYSVGCG 232 (432)
Q Consensus 157 G~~~~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~-~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G-~~vy~~G~n 232 (432)
+....++++.+|+ |+++|.+. -.-.-..... ..|.-+. ..+..|..|++-.++.+.-++ ++ -.+|.+++.
T Consensus 14 ~G~t~i~~d~~gefi~tcgsdg--~ir~~~~~sd~e~P~ti~--~~g~~v~~ia~~s~~f~~~s~--~~tv~~y~fps~ 86 (933)
T KOG1274|consen 14 GGLTLICYDPDGEFICTCGSDG--DIRKWKTNSDEEEPETID--ISGELVSSIACYSNHFLTGSE--QNTVLRYKFPSG 86 (933)
T ss_pred CceEEEEEcCCCCEEEEecCCC--ceEEeecCCcccCCchhh--ccCceeEEEeecccceEEeec--cceEEEeeCCCC
Confidence 3344566777775 44444332 2221122222 3344443 256679999999998888887 55 146666543
No 46
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=61.99 E-value=1.3e+02 Score=31.42 Aligned_cols=57 Identities=16% Similarity=0.054 Sum_probs=31.2
Q ss_pred EEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCc---EEEEecCCCcEEEEecCCCEEEEeC
Q 014027 273 VVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK---AIHVATGDYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 273 ~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~---i~~i~~G~~~s~~lt~~g~vy~~G~ 337 (432)
+.+-++.||+.|-... +.. ... .+.-.+...+ +..+.....+.-+..-++++|+.|.
T Consensus 471 ~a~~~~~iYvvGG~~~-~~~------~~~-VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG-TSA------LSS-VERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC-CCc------cce-EEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 5566889999985332 100 001 1111111112 2234456667777777899999996
No 47
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=59.33 E-value=1.8e+02 Score=28.35 Aligned_cols=73 Identities=14% Similarity=0.258 Sum_probs=38.5
Q ss_pred cEEEEEcCCC-eE-EEEecCCC-EEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc-eEEEEeCCCCEE
Q 014027 96 RIIQAAAGAG-RT-MLISDAGQ-VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g~~-~~-~~lt~~g~-vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~-~~~~lt~~G~vy 171 (432)
.+..|..|.. |. ++.+.||+ +|+.+.. |.+ ..+.......+..|..|.. +.++++.||+..
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v-------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV-------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE-------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE-------------EEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 5667776654 54 45677786 8887542 221 1233334445778877766 578899999855
Q ss_pred EEEecCCCcCCC
Q 014027 172 TFSWGNDARLGH 183 (432)
Q Consensus 172 ~~G~n~~gqlg~ 183 (432)
.-+....+++-.
T Consensus 93 ~v~n~~~~~v~v 104 (369)
T PF02239_consen 93 YVANYEPGTVSV 104 (369)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEecCCCceeE
Confidence 444433444443
No 48
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.17 E-value=1.3e+02 Score=34.06 Aligned_cols=165 Identities=15% Similarity=0.157 Sum_probs=81.5
Q ss_pred eEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC-----ceEEEEeCCCCEEEEecCCC-
Q 014027 215 LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-----WHAAVVGQDGRVCTWGWGRY- 288 (432)
Q Consensus 215 ~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~-----~h~~~lt~~g~vy~wG~n~~- 288 (432)
+.+|. |. +||-|=.+..+++..-+...... ..+ ..++...|- .|.+++..--+|+..|-.-.
T Consensus 93 aWiTi--Dn-~L~lWny~~~~e~~~~d~~shtI-l~V--------~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~ 160 (1311)
T KOG1900|consen 93 AWITI--DN-NLFLWNYESDNELAEYDGLSHTI-LKV--------GLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDE 160 (1311)
T ss_pred eEEEe--CC-eEEEEEcCCCCccccccchhhhh-eee--------eeecCCCCcchhhhheeEEecccceEEEEEEEecc
Confidence 34565 66 99999877655554322222111 111 111222222 49999988889998884211
Q ss_pred CcccCCCCCCccCcEEecccCCCcEEEEec-CCCcEEEE-ecCCCEEEEeCCCC-----CCCCCCCCcC-----CCCCcc
Q 014027 289 GCLGHGNEECESVPKVVQALNDVKAIHVAT-GDYTTFVV-SEDGDVYSFGCGES-----ASLGHNAIAD-----GQGNRH 356 (432)
Q Consensus 289 gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~-G~~~s~~l-t~~g~vy~~G~n~~-----gqlg~~~~~~-----~~~~~~ 356 (432)
.+.+.. .+.. ..+|.. |-+-+++. |++|+||.-|.+.+ .|...+-... ..+...
T Consensus 161 ~~~~~~------------~f~~--~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ 226 (1311)
T KOG1900|consen 161 FTGELS------------IFNT--SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSV 226 (1311)
T ss_pred ccCccc------------cccc--ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhH
Confidence 111111 0110 022333 44444444 77788887776541 0111111000 001112
Q ss_pred cccccCeeeeecccccceEEEEeeeccccccceEEE--EeCCCCEEEecCCCCccc
Q 014027 357 ANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFA--LTESGKLYAFGAGDKGQL 410 (432)
Q Consensus 357 ~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~--lt~~G~v~~wG~n~~gqL 410 (432)
.....|..+..+....++|.+|+. +....+. +++.|.+=+|=-..+|+-
T Consensus 227 ls~lvPs~~~~~~~~~dpI~qi~I-----D~SR~IlY~lsek~~v~~Y~i~~~G~~ 277 (1311)
T KOG1900|consen 227 LSSLVPSLLSVPGSSKDPIRQITI-----DNSRNILYVLSEKGTVSAYDIGGNGLG 277 (1311)
T ss_pred HHHhhhhhhcCCCCCCCcceeeEe-----ccccceeeeeccCceEEEEEccCCCcc
Confidence 233446644433234568999999 7776665 567787777755544443
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=59.01 E-value=1.4e+02 Score=27.16 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=62.1
Q ss_pred eecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCC-------cccccccCcCCCCcEEEEEcCCCeEEEEecC
Q 014027 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-------EWRPRPIRSLQGIRIIQAAAGAGRTMLISDA 113 (432)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~-------~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~ 113 (432)
..+....=-.|.+-..|.-..|-||..-.|.+..+......+ ...-..+..+..+.|+. +++.++|
T Consensus 39 ~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk-------~~af~~d 111 (334)
T KOG0278|consen 39 GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVK-------AVAFSQD 111 (334)
T ss_pred CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheee-------eEEeccc
Confidence 334455556788888888889989888777665443222111 11122233445455543 3344444
Q ss_pred CCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEE-EeecCceEEEE-eCCCCEEEEE
Q 014027 114 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ-AAIGNFFTAVL-SREGRVYTFS 174 (432)
Q Consensus 114 g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~-v~~G~~~~~~l-t~~G~vy~~G 174 (432)
-+-...|.++.- | .--...+....|+.+..-.+ -|+. +-|-.+++++- ++++.|-.|-
T Consensus 112 s~~lltgg~ekl-l-rvfdln~p~App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 112 SNYLLTGGQEKL-L-RVFDLNRPKAPPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred chhhhccchHHH-h-hhhhccCCCCCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEE
Confidence 443333333210 0 00001223344444444333 2444 45666777665 7788887773
No 50
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=58.95 E-value=13 Score=22.91 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=16.0
Q ss_pred ceEEEEeCCCCEEEEecCC
Q 014027 269 WHAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~ 287 (432)
-+.++++.+|.+|+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999743
No 51
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=57.96 E-value=2.8e+02 Score=30.13 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=41.9
Q ss_pred cCCCeEEEEecCCc-EEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCE--EEEeC
Q 014027 50 AGPGHSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQV--YAFGK 121 (432)
Q Consensus 50 ~G~~~~~~l~~~g~-v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~v--y~~G~ 121 (432)
.++...+..+.+|+ |+++|++..=..=. ...+...|.-|.. .+..|..|++-..|.+.-++++.| |.+++
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~-~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWK-TNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEee-cCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 35566777777766 55666553211111 1122245655553 556899999988888888888864 44443
No 52
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=56.89 E-value=1.6e+02 Score=26.87 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCccEEEEeecCceEEEEeCCCCEEEEEecCCCc-CCCCCCCCccccccc
Q 014027 147 KNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDAR-LGHHTEPNDVEPHPL 195 (432)
Q Consensus 147 ~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gq-lg~~~~~~~~~p~~i 195 (432)
.+..|-.++.-+.|.+.- .+|+||+|-|++.-. ++....-....|.+.
T Consensus 61 hdgpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 61 HDGPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred cCCCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 455688888876665544 569999999998655 555554455555554
No 53
>PHA03098 kelch-like protein; Provisional
Probab=55.68 E-value=1.1e+02 Score=31.27 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=11.9
Q ss_pred CceEEEEeCCCCEEEEec
Q 014027 268 AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (432)
..|+++ .-+++||++|-
T Consensus 381 ~~~~~~-~~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVV-NVNNLIYVIGG 397 (534)
T ss_pred ccceEE-EECCEEEEECC
Confidence 445554 45789999985
No 54
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.43 E-value=2.9e+02 Score=29.48 Aligned_cols=112 Identities=17% Similarity=0.089 Sum_probs=61.9
Q ss_pred EEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCC
Q 014027 161 TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHG 240 (432)
Q Consensus 161 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~ 240 (432)
++++...|+-.++|....|||..-.-.....-.+.+.-+ ..+..++-..+-.++.|--+|| +|-.|-..+.
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDg-KVKvWn~~Sg------ 382 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDG-KVKVWNTQSG------ 382 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCC-cEEEEeccCc------
Confidence 344555666666666666666544322222222222111 2366666666666666655588 8888843221
Q ss_pred CCCCCCCceeeehhhc--cCCccEEEEcCCceEEEEeCCCCEEEEecCCCC
Q 014027 241 SRTDEKHPRLIEQFQL--LNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYG 289 (432)
Q Consensus 241 ~~~~~~~p~~~~~~~~--~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~g 289 (432)
..+-.|.. .....++...-.+..+-..-||+|-+|--..|-
T Consensus 383 --------fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 383 --------FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred --------eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 11112222 233445666666677777889999999877663
No 55
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=52.96 E-value=3.1e+02 Score=29.20 Aligned_cols=119 Identities=16% Similarity=0.123 Sum_probs=65.0
Q ss_pred cceEecCCCe--EEEEecCCcEEEEeCCCCCCcCCCCCCC-cccccccCcCCCCcEEEEEcCCCeEEEEe--cCCCEEEE
Q 014027 45 NSQAIAGPGH--SIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPRPIRSLQGIRIIQAAAGAGRTMLIS--DAGQVYAF 119 (432)
Q Consensus 45 i~~i~~G~~~--~~~l~~~g~v~~~G~n~~gqlG~~~~~~-~~~p~~i~~~~~~~i~~v~~g~~~~~~lt--~~g~vy~~ 119 (432)
|-+.+.+..- ++.++..|.=.++|+..-|||..=+-.. .+..+.-..+. ++..++-..+..++.| +||+|-+|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~--~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD--RITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc--ceeeEEECCCCcEEEeccCCCcEEEE
Confidence 4455555433 5667778999999999888887522111 11111111111 5666666666444444 67888887
Q ss_pred eCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecC
Q 014027 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGN 177 (432)
Q Consensus 120 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~ 177 (432)
-..+--. .-+.-+.-.....+++..-.+..+-..=||+|-+|-...
T Consensus 378 n~~SgfC------------~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 378 NTQSGFC------------FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eccCceE------------EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 6543110 001111122334556666666666677799999885444
No 56
>PHA02713 hypothetical protein; Provisional
Probab=49.84 E-value=1.1e+02 Score=31.67 Aligned_cols=14 Identities=14% Similarity=0.105 Sum_probs=10.4
Q ss_pred EEeCCCCEEEEecC
Q 014027 273 VVGQDGRVCTWGWG 286 (432)
Q Consensus 273 ~lt~~g~vy~wG~n 286 (432)
+..-+|+||+.|-.
T Consensus 347 ~~~~~g~IYviGG~ 360 (557)
T PHA02713 347 LAVIDDTIYAIGGQ 360 (557)
T ss_pred EEEECCEEEEECCc
Confidence 44557899999953
No 57
>PHA02713 hypothetical protein; Provisional
Probab=49.51 E-value=2e+02 Score=29.85 Aligned_cols=14 Identities=36% Similarity=0.358 Sum_probs=10.1
Q ss_pred EEecCCCEEEEeCC
Q 014027 325 VVSEDGDVYSFGCG 338 (432)
Q Consensus 325 ~lt~~g~vy~~G~n 338 (432)
+..-+|+||+.|..
T Consensus 459 ~~~~~~~IYv~GG~ 472 (557)
T PHA02713 459 VVSHKDDIYVVCDI 472 (557)
T ss_pred EEEECCEEEEEeCC
Confidence 34446899999954
No 58
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=49.40 E-value=1.6e+02 Score=28.03 Aligned_cols=57 Identities=16% Similarity=0.330 Sum_probs=37.2
Q ss_pred EEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEE--EecCCCEEEEeC
Q 014027 273 VVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFV--VSEDGDVYSFGC 337 (432)
Q Consensus 273 ~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~--lt~~g~vy~~G~ 337 (432)
+..+.|+||+|-... .+....++......+..|.|.+....-+++ +++++.||.|-.
T Consensus 324 ~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 446889999997422 222244555555556677777766655544 588899999853
No 59
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=49.34 E-value=2.6e+02 Score=27.13 Aligned_cols=256 Identities=10% Similarity=0.010 Sum_probs=0.0
Q ss_pred eeecceeeecccceEecCCC-e--------EEEEecCCc-EEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC
Q 014027 34 LLAGEACCRRENSQAIAGPG-H--------SIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG 103 (432)
Q Consensus 34 ~~~~~~~~~~~i~~i~~G~~-~--------~~~l~~~g~-v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g 103 (432)
+..-..-..+.+.+|..|.. + .+.|+.||+ +|+.-......+..-+......-..++.+. ...-...+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~--~~~vy~t~ 156 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD--CYHIFPTA 156 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC--CcEEEEec
Q ss_pred CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCC
Q 014027 104 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGH 183 (432)
Q Consensus 104 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (432)
....+++-.||+.......+.|+ ..........+......... ........-++++.+|.||..
T Consensus 157 e~~~~~~~~Dg~~~~v~~d~~g~---~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~i---------- 220 (352)
T TIGR02658 157 NDTFFMHCRDGSLAKVGYGTKGN---PKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQI---------- 220 (352)
T ss_pred CCccEEEeecCceEEEEecCCCc---eEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEE----------
Q ss_pred CCCCC-----cccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhc-c
Q 014027 184 HTEPN-----DVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-L 257 (432)
Q Consensus 184 ~~~~~-----~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~-~ 257 (432)
. ...-..+.......+-..+.-+.-..++++. +|+++|.- .++.........-..+.-+.. .
T Consensus 221 ----d~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~--dg~~lyV~------~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 221 ----DLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR--ARDRIYLL------ADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred ----ecCCCcceecceeeeccccccccccCCCcceeEEEcC--CCCEEEEE------ecCCccccccCCCCEEEEEECCC
Q ss_pred CCccEEEEcCCc-eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEE-ecCCCcEEEEecC
Q 014027 258 NLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHV-ATGDYTTFVVSED 329 (432)
Q Consensus 258 ~~~i~~i~~G~~-h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i-~~G~~~s~~lt~~ 329 (432)
...+..|..|.. +.++++.||+.+.+-.|.. ...-..+.......+..| ..|..-.+.++-|
T Consensus 289 ~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~----------s~~VsViD~~t~k~i~~i~~vg~~P~~~~~~~ 352 (352)
T TIGR02658 289 GKRLRKIELGHEIDSINVSQDAKPLLYALSTG----------DKTLYIFDAETGKELSSVNQLGRGPQVITTAD 352 (352)
T ss_pred CeEEEEEeCCCceeeEEECCCCCeEEEEeCCC----------CCcEEEEECcCCeEEeeeccCCCCCeEEecCC
No 60
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=48.39 E-value=4.3e+02 Score=29.47 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.6
Q ss_pred cccceEecCCCe--EEEEecCCcEEEEeCC
Q 014027 43 RENSQAIAGPGH--SIAVTSKGVVYSFGSN 70 (432)
Q Consensus 43 ~~i~~i~~G~~~--~~~l~~~g~v~~~G~n 70 (432)
..|.+|+....+ .++++++|++..|-..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 478999999888 8999999998888643
No 61
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=46.73 E-value=1.6e+02 Score=27.10 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=34.0
Q ss_pred CCceEEEEeCCCCEEEEec-CC-CCcccCCC----CCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCC
Q 014027 267 GAWHAAVVGQDGRVCTWGW-GR-YGCLGHGN----EECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 267 G~~h~~~lt~~g~vy~wG~-n~-~gqlg~~~----~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n 338 (432)
.+.|+++.- ++++|.||- |+ +|.+..-. +..+....+++..- --+-+.|++++-. +++|++|--
T Consensus 79 RYGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~v------PgaRDGHsAcV~g-n~MyiFGGy 148 (392)
T KOG4693|consen 79 RYGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFV------PGARDGHSACVWG-NQMYIFGGY 148 (392)
T ss_pred hcCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeec------CCccCCceeeEEC-cEEEEecCh
Confidence 456887665 459999984 33 44333211 11111111121110 1345678888874 689999943
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=45.76 E-value=1.2e+02 Score=29.25 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=8.9
Q ss_pred ceEEEEeCCCCEEEE
Q 014027 159 FFTAVLSREGRVYTF 173 (432)
Q Consensus 159 ~~~~~lt~~G~vy~~ 173 (432)
++.++.+.+|+||+|
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 345556666666654
No 63
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.36 E-value=3.4e+02 Score=26.86 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=38.8
Q ss_pred ccEEEEeecC-ceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccc-ccCCCCEEEEEecccceeEEEeeCCCCEE
Q 014027 149 IFVVQAAIGN-FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG-TLENIPVVQIAAGYCYLLALACQPSGMAV 226 (432)
Q Consensus 149 ~~I~~v~~G~-~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~-~~~~~~i~~i~~g~~~~~~l~~~~~G~~v 226 (432)
.+|+.+.-.. ++.++|.++|.++.+ +-.|.. ....+..+.. ...+.++-.+..+.+-.++|+. ++ ++
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy--~~~G~~------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~--~~-~~ 149 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVY--DLFGEF------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTG--NN-RF 149 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEE--eCCCce------eechhhhccccCcccccccccccCCCCEEEECC--CC-eE
Confidence 4577776644 477889999988865 333333 0011111110 1122234344556566788887 77 88
Q ss_pred EEE
Q 014027 227 YSV 229 (432)
Q Consensus 227 y~~ 229 (432)
|..
T Consensus 150 ~~v 152 (410)
T PF04841_consen 150 YVV 152 (410)
T ss_pred EEE
Confidence 887
No 64
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=41.29 E-value=67 Score=18.16 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.8
Q ss_pred CcEEEEecCCCcEEEEecCCCE
Q 014027 311 VKAIHVATGDYTTFVVSEDGDV 332 (432)
Q Consensus 311 ~~i~~i~~G~~~s~~lt~~g~v 332 (432)
+.|..|++|....++.|+.+-+
T Consensus 2 E~i~aia~g~~~vavaTS~~~l 23 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYL 23 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeE
Confidence 4789999999999999987754
No 65
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=39.55 E-value=1.1e+02 Score=29.90 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=46.4
Q ss_pred ccceEecCCCe---EEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEe
Q 014027 44 ENSQAIAGPGH---SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120 (432)
Q Consensus 44 ~i~~i~~G~~~---~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G 120 (432)
.++.+++|..+ .+++..+|++..|-.| ..+.++ .....+.+|..-....+|++..|+||++.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~--------------~Wt~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGN--------------VLKALK-QMGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCC--------------eeeEcc-CCCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 34556777775 7777788999888521 344444 24558999999999999999999999987
No 66
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=38.72 E-value=76 Score=30.04 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=38.8
Q ss_pred EEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceE--EEEeCCCCEEEEE
Q 014027 108 MLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFT--AVLSREGRVYTFS 174 (432)
Q Consensus 108 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~--~~lt~~G~vy~~G 174 (432)
++..+.|+||+|-... .++...++......+..|.+.+...+-+ +++++++.||.|-
T Consensus 323 a~gnq~g~v~vwdL~~----------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDN----------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hhccCCCcEEEEECCC----------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3455778999996432 2233556666666677788888776654 4578899999884
No 67
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=37.38 E-value=3.6e+02 Score=25.40 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=12.0
Q ss_pred EEEEeCCCCEEEecCCC
Q 014027 390 TFALTESGKLYAFGAGD 406 (432)
Q Consensus 390 ~~~lt~~G~v~~wG~n~ 406 (432)
+.+...++++|+.|-..
T Consensus 217 ~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 217 ASIKINESLLLCIGGFN 233 (323)
T ss_pred eEEEECCCEEEEECCcC
Confidence 33455678999998654
No 68
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=36.38 E-value=3.4e+02 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=22.1
Q ss_pred ccccccCcCCCCcEEEE-EcCCCeEEEE-ecCCCEEEEeCC
Q 014027 84 WRPRPIRSLQGIRIIQA-AAGAGRTMLI-SDAGQVYAFGKD 122 (432)
Q Consensus 84 ~~p~~i~~~~~~~i~~v-~~g~~~~~~l-t~~g~vy~~G~n 122 (432)
..|+.+..-.+ -|+.+ -|-..++++- ++|+.|-.|-.-
T Consensus 134 App~E~~ghtg-~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTG-GIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCC-cceeEEEeccCceEEeeccCCceEEEEec
Confidence 34555543333 34444 4666666555 778888888654
No 69
>PHA02146 hypothetical protein
Probab=36.18 E-value=47 Score=23.34 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=23.0
Q ss_pred eecCceEEE-EeCCCCEEEEEecCCCcCCCCCC
Q 014027 155 AIGNFFTAV-LSREGRVYTFSWGNDARLGHHTE 186 (432)
Q Consensus 155 ~~G~~~~~~-lt~~G~vy~~G~n~~gqlg~~~~ 186 (432)
..|..+++- |+++|.+|+.|...+|.-|....
T Consensus 24 ~ng~ef~v~~~d~dgd~~s~~iswng~dg~s~~ 56 (86)
T PHA02146 24 TNGTEFTVTNIDDDGDLYTYDISWNGRDGKSAF 56 (86)
T ss_pred CCCcEEEeeccccCCCeEeecccccCccCCccc
Confidence 345555554 78999999999887777665544
No 70
>PHA03098 kelch-like protein; Provisional
Probab=35.81 E-value=2.4e+02 Score=28.91 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=12.0
Q ss_pred CCcEEEEecCCCEEEEeC
Q 014027 320 DYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 320 ~~~s~~lt~~g~vy~~G~ 337 (432)
..|+++. -+|++|++|.
T Consensus 381 ~~~~~~~-~~~~iYv~GG 397 (534)
T PHA03098 381 YNPCVVN-VNNLIYVIGG 397 (534)
T ss_pred ccceEEE-ECCEEEEECC
Confidence 3555544 4789999996
No 71
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=35.42 E-value=76 Score=23.26 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=31.6
Q ss_pred cccccCeeeeecccccceEEEEeeeccccc-cceEEEEeCCCCEEEecCCCCcccCCc
Q 014027 357 ANVLTPQLVTSLKQVNERVVQISLTNSIYW-NAHTFALTESGKLYAFGAGDKGQLGIE 413 (432)
Q Consensus 357 ~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G-~~~~~~lt~~G~v~~wG~n~~gqLG~g 413 (432)
.....|..+. .+..-..|+| . ....++|+.||.+|+-|--+.|++=..
T Consensus 4 ~~~t~Pa~i~----~~~tS~~Vs~-----~~~gs~ValS~dg~l~G~ai~~sG~ati~ 52 (81)
T PF03785_consen 4 MTVTHPASIN----LGQTSISVSC-----DVPGSYVALSQDGDLYGKAIVNSGNATIN 52 (81)
T ss_dssp --EE--SEEE----TT-SEEEEEE-----SSTT-EEEEEETTEEEEEEE-BTTEEEEE
T ss_pred ceEccccccc----ccccEEEEEe-----cCCCcEEEEecCCEEEEEEEecCceEEEE
Confidence 3455666666 4456788999 7 778899999999999997667766544
No 72
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.25 E-value=1.5e+02 Score=32.83 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=18.6
Q ss_pred cCCceEEEE--eCCCCEEEEecCCCCccc
Q 014027 266 AGAWHAAVV--GQDGRVCTWGWGRYGCLG 292 (432)
Q Consensus 266 ~G~~h~~~l--t~~g~vy~wG~n~~gqlg 292 (432)
|..+-.++| -+|+++++|+-|+--+|+
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgEvl~ 290 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGEVLG 290 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCceEee
Confidence 455534444 369999999998855555
No 73
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.99 E-value=6.8e+02 Score=28.61 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=44.5
Q ss_pred CEEEEEecccc-eeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEE-EcCCceEEEE-eCCCC
Q 014027 203 PVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV-AAGAWHAAVV-GQDGR 279 (432)
Q Consensus 203 ~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i-~~G~~h~~~l-t~~g~ 279 (432)
.+.+++....| +++++-.+|| .|-.|-...- .|.+ ...+..-. ....+.++.++ .|+..+.+|+ ++||.
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DG-tVKvW~~~k~--~~~~-~s~rS~lt----ys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDG-TVKVWNLRKL--EGEG-GSARSELT----YSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred cccceeecCCCCceEEEecCCc-eEEEeeehhh--hcCc-ceeeeeEE----EeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 46688888888 8888888899 9999964321 1111 11110000 11122233333 4555565554 88999
Q ss_pred EEEEecCCC
Q 014027 280 VCTWGWGRY 288 (432)
Q Consensus 280 vy~wG~n~~ 288 (432)
|-..+-+.+
T Consensus 1122 v~~~~id~~ 1130 (1431)
T KOG1240|consen 1122 VRVLRIDHY 1130 (1431)
T ss_pred EEEEEcccc
Confidence 888776554
No 74
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=33.60 E-value=37 Score=21.67 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=11.9
Q ss_pred CCcEEEEecCCCEEEEeC
Q 014027 320 DYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 320 ~~~s~~lt~~g~vy~~G~ 337 (432)
..|+++...++++|++|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 368888887899999994
No 75
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=32.90 E-value=4.9e+02 Score=25.67 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=40.5
Q ss_pred CccEEEEeecCceEEEEe--CCCCEEEEEecCCCcCCCCCCCCcccccccccc-cCCCCEEEEEecccceeEEEeeCCCC
Q 014027 148 NIFVVQAAIGNFFTAVLS--REGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT-LENIPVVQIAAGYCYLLALACQPSGM 224 (432)
Q Consensus 148 ~~~I~~v~~G~~~~~~lt--~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~-~~~~~i~~i~~g~~~~~~l~~~~~G~ 224 (432)
..+|.+++...+.-++|. .+.++..|-.- +...+.+...- .....|.....|.+..++++-.+|+
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~-----------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~- 462 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLE-----------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDS- 462 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecc-----------hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCc-
Confidence 446777777666555554 46677777311 11112222221 1222366666677767777656688
Q ss_pred EEEEEcc
Q 014027 225 AVYSVGC 231 (432)
Q Consensus 225 ~vy~~G~ 231 (432)
+||.|-.
T Consensus 463 kvyIWhr 469 (519)
T KOG0293|consen 463 KVYIWHR 469 (519)
T ss_pred eEEEEEc
Confidence 9999954
No 76
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=32.40 E-value=84 Score=17.55 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=13.9
Q ss_pred eEEEEeCCCCEEEEecCC
Q 014027 270 HAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 270 h~~~lt~~g~vy~wG~n~ 287 (432)
|.++++.+|+||+.=.++
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 677888999999876543
No 77
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=31.71 E-value=5.7e+02 Score=26.00 Aligned_cols=186 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred EcCCCeEEEEecCCC--EEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCC
Q 014027 101 AAGAGRTMLISDAGQ--VYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGND 178 (432)
Q Consensus 101 ~~g~~~~~~lt~~g~--vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~ 178 (432)
+.+..+.+++++..+ +=+|-......++.-....+.+..-+.-+.-.+ .=|.||..|.++-+-.|..+
T Consensus 165 ~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~n---liit~Gk~H~~Fw~~~~~~l------- 234 (626)
T KOG2106|consen 165 INGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPN---LIITCGKGHLYFWTLRGGSL------- 234 (626)
T ss_pred cCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCc---EEEEeCCceEEEEEccCCce-------
Q ss_pred CcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccC
Q 014027 179 ARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLN 258 (432)
Q Consensus 179 gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~ 258 (432)
...+.+....+...|..+.-+.+--++--. +++.++.|+...+ .-
T Consensus 235 -----------~k~~~~fek~ekk~Vl~v~F~engdviTgD--S~G~i~Iw~~~~~----------------------~~ 279 (626)
T KOG2106|consen 235 -----------VKRQGIFEKREKKFVLCVTFLENGDVITGD--SGGNILIWSKGTN----------------------RI 279 (626)
T ss_pred -----------EEEeeccccccceEEEEEEEcCCCCEEeec--CCceEEEEeCCCc----------------------eE
Q ss_pred CccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEE
Q 014027 259 LQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVY 333 (432)
Q Consensus 259 ~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy 333 (432)
.+-+.+--|.-+++.+.++|+|.. |--+....--++.-....+++++...+ .|.-|+-|..-.++=|..+.|.
T Consensus 280 ~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G-~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 280 SKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFG-PIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred EeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcC-CeeEEecCCCcEEEeeccceEE
No 78
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=30.69 E-value=8.1e+02 Score=27.47 Aligned_cols=131 Identities=9% Similarity=-0.045 Sum_probs=66.8
Q ss_pred CccEEEE--eecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccc---cccCCCCEEEEEeccc-----ceeEE
Q 014027 148 NIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL---GTLENIPVVQIAAGYC-----YLLAL 217 (432)
Q Consensus 148 ~~~I~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~---~~~~~~~i~~i~~g~~-----~~~~l 217 (432)
+..+..+ +...++.++.|+.|++|..-...-.+.... ..-.|..-. ....+++|+.+.+-.. +.+++
T Consensus 551 ~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~---~~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~ 627 (957)
T PRK13979 551 GDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWK---EKGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFI 627 (957)
T ss_pred CCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcC---CCCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEE
Confidence 3345544 444556788999999996543332221110 011111111 1113667877776542 35677
Q ss_pred EeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC-----ceEEEEeCCCCEEEEecCCCCccc
Q 014027 218 ACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-----WHAAVVGQDGRVCTWGWGRYGCLG 292 (432)
Q Consensus 218 ~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~-----~h~~~lt~~g~vy~wG~n~~gqlg 292 (432)
|+ +| .+.-.=-..+- .. .. ....-.+.. +.+++.+.... .+.+++|++|.+.-+-.++-..+|
T Consensus 628 Tk--~G-~VKrt~L~ef~------~~-r~-~~~aikL~e-~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mG 695 (957)
T PRK13979 628 TD--SG-GIKKTSLDKFV------TN-YT-KLMALKLKK-GEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVD 695 (957)
T ss_pred EC--CC-eEEEEehhhcc------cc-cc-ceEEEEcCC-CCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence 76 88 77765322211 00 11 122222222 33555443322 458899999998888776655555
Q ss_pred C
Q 014027 293 H 293 (432)
Q Consensus 293 ~ 293 (432)
.
T Consensus 696 R 696 (957)
T PRK13979 696 R 696 (957)
T ss_pred C
Confidence 4
No 79
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=30.56 E-value=85 Score=23.04 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=22.6
Q ss_pred EEEEeec-CceEEEEeCCCCEEEEEecCCCc
Q 014027 151 VVQAAIG-NFFTAVLSREGRVYTFSWGNDAR 180 (432)
Q Consensus 151 I~~v~~G-~~~~~~lt~~G~vy~~G~n~~gq 180 (432)
=..|+|. ....++|++||.||+-+.-..|+
T Consensus 18 S~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~ 48 (81)
T PF03785_consen 18 SISVSCDVPGSYVALSQDGDLYGKAIVNSGN 48 (81)
T ss_dssp EEEEEESSTT-EEEEEETTEEEEEEE-BTTE
T ss_pred EEEEEecCCCcEEEEecCCEEEEEEEecCce
Confidence 4788999 88899999999999766544554
No 80
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=30.47 E-value=7e+02 Score=26.68 Aligned_cols=73 Identities=18% Similarity=0.066 Sum_probs=41.7
Q ss_pred CEEEEEecccceeEEEeeCCCC-EEEEEccCCCCCcCCCCCCCCCCceeeeh--h-hccCCccEEEEcCCc----eEEEE
Q 014027 203 PVVQIAAGYCYLLALACQPSGM-AVYSVGCGLGGKLGHGSRTDEKHPRLIEQ--F-QLLNLQPVVVAAGAW----HAAVV 274 (432)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~-~vy~~G~n~~gqlg~~~~~~~~~p~~~~~--~-~~~~~~i~~i~~G~~----h~~~l 274 (432)
+|..++...+.+.++| .|+ .|--| | |..+.+.....|..-.. + .........++||-. .+++|
T Consensus 167 ~Vsav~fsEdgSYfvT---~gnrHvk~w----y--l~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfai 237 (1080)
T KOG1408|consen 167 VVSAVAFSEDGSYFVT---SGNRHVKLW----Y--LQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAI 237 (1080)
T ss_pred eEEEEEEccCCceeee---eeeeeEEEE----E--eeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEE
Confidence 4677777788888887 442 34444 1 11112222222222111 1 113345678999988 89999
Q ss_pred eCCCCEEEEe
Q 014027 275 GQDGRVCTWG 284 (432)
Q Consensus 275 t~~g~vy~wG 284 (432)
|..|.|.-+-
T Consensus 238 t~qGhLvEFS 247 (1080)
T KOG1408|consen 238 TAQGHLVEFS 247 (1080)
T ss_pred ecccceeeec
Confidence 9999987664
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=30.02 E-value=3.3e+02 Score=27.20 Aligned_cols=50 Identities=16% Similarity=0.204 Sum_probs=26.3
Q ss_pred cceeEEEeeCCCCEEEEEccCCCCCcCC---CCCCCCCCceeeehhhccCCccEEEE
Q 014027 212 CYLLALACQPSGMAVYSVGCGLGGKLGH---GSRTDEKHPRLIEQFQLLNLQPVVVA 265 (432)
Q Consensus 212 ~~~~~l~~~~~G~~vy~~G~n~~gqlg~---~~~~~~~~p~~~~~~~~~~~~i~~i~ 265 (432)
..++|+.. +| ..+..|++. |.... .+......|+++..+......|.++.
T Consensus 390 gts~~~S~--ng-~ylA~GS~~-GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 390 GTSLCISL--NG-SYLATGSDS-GIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred eeeeeecC--CC-ceEEeccCc-ceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 34455554 77 777777642 11111 12233567777777655555555543
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=30.00 E-value=5.2e+02 Score=25.02 Aligned_cols=258 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred hhheeeeeeecceeeecccceEecCCCeEEEEecC--CcEEEEeCCCCCCcCCCCCCCcccccccC-cCCCCcEEEEEcC
Q 014027 27 WKLVLRFLLAGEACCRRENSQAIAGPGHSIAVTSK--GVVYSFGSNSSGQLGHGTTEEEWRPRPIR-SLQGIRIIQAAAG 103 (432)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~i~~i~~G~~~~~~l~~~--g~v~~~G~n~~gqlG~~~~~~~~~p~~i~-~~~~~~i~~v~~g 103 (432)
|...-...+..-+-.+.-|++++....-+++.|-+ |+|.+| ..........+. ...+..-..=.--
T Consensus 91 W~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~-----------~~stg~~~~~~~~e~~dieWl~WHp~ 159 (399)
T KOG0296|consen 91 WDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF-----------KVSTGGEQWKLDQEVEDIEWLKWHPR 159 (399)
T ss_pred EEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE-----------EcccCceEEEeecccCceEEEEeccc
Q ss_pred CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCC
Q 014027 104 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGH 183 (432)
Q Consensus 104 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (432)
....+|=+.||.||+|--++.+++-.-.-....+..-..++. + +.+.+|.. ||.|..|-.-...++-.
T Consensus 160 a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pd--G---Kr~~tgy~-------dgti~~Wn~ktg~p~~~ 227 (399)
T KOG0296|consen 160 AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPD--G---KRILTGYD-------DGTIIVWNPKTGQPLHK 227 (399)
T ss_pred ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCC--C---ceEEEEec-------CceEEEEecCCCceeEE
Q ss_pred CCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEE
Q 014027 184 HTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV 263 (432)
Q Consensus 184 ~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~ 263 (432)
...........+...... -.-++|.....+.+.....| +|..+=++ ..|...+........|..
T Consensus 228 ~~~~e~~~~~~~~~~~~~--~~~~~g~~e~~~~~~~~~sg-KVv~~~n~-------------~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAG--STLTKGNSEGVACGVNNGSG-KVVNCNNG-------------TVPELKPSQEELDESVES 291 (399)
T ss_pred ecccccCcCCcccccccc--ceeEeccCCccEEEEccccc-eEEEecCC-------------CCccccccchhhhhhhhh
Q ss_pred EEcCCceEEEE--eCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEE
Q 014027 264 VAAGAWHAAVV--GQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 335 (432)
Q Consensus 264 i~~G~~h~~~l--t~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~ 335 (432)
|.......++- .-+|+|-.| .....+++.+-..+.--+.-..-+...-++-+.+|.|+.|
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iy------------D~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~w 353 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIY------------DLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQW 353 (399)
T ss_pred cccccccchhhcccccceEEEE------------ecccchhheeccCCCceEEEEEcCcchheeeccCceEEee
No 83
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.30 E-value=4.6e+02 Score=28.25 Aligned_cols=122 Identities=11% Similarity=0.088 Sum_probs=62.9
Q ss_pred eEEEEeCCCCEEEEecCCCCcccCCC----CC----CccCcEEe-c-ccCCCcEEEEecCCCcE-EEEecCCCEEE----
Q 014027 270 HAAVVGQDGRVCTWGWGRYGCLGHGN----EE----CESVPKVV-Q-ALNDVKAIHVATGDYTT-FVVSEDGDVYS---- 334 (432)
Q Consensus 270 h~~~lt~~g~vy~wG~n~~gqlg~~~----~~----~~~~p~~i-~-~~~~~~i~~i~~G~~~s-~~lt~~g~vy~---- 334 (432)
.-++...++++|+|=.++..-+..+- .. ......++ . ......|.+|......+ +||.-.-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 44555567999999987765443321 00 00111111 1 12234677777655444 44444444443
Q ss_pred --EeCCCCCCCCCCCCcCCCCCcccccccCeeeeecc-cccceEEEEeeeccccccceEEEEeCCCCE
Q 014027 335 --FGCGESASLGHNAIADGQGNRHANVLTPQLVTSLK-QVNERVVQISLTNSIYWNAHTFALTESGKL 399 (432)
Q Consensus 335 --~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v 399 (432)
||.+..-+.|-.. ..+...|.--..+. .....|.+|.=+-....+.|-++||+|+.+
T Consensus 114 ~r~g~~~~~~~g~~~--------i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~l 173 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKE--------INCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTL 173 (717)
T ss_pred cccCccccccCCCcc--------eeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEE
Confidence 5655433333332 23333333222221 134577788765554467899999999864
No 84
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=29.11 E-value=4.3e+02 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=16.4
Q ss_pred ceEecC---CCeEEEEecCCcEEEEeCC
Q 014027 46 SQAIAG---PGHSIAVTSKGVVYSFGSN 70 (432)
Q Consensus 46 ~~i~~G---~~~~~~l~~~g~v~~~G~n 70 (432)
++|..| ....+++...|-||+....
T Consensus 73 ~~Ig~g~W~~F~~i~~d~~G~LYaV~~~ 100 (229)
T PF14517_consen 73 KQIGDGGWNSFKFIFFDPTGVLYAVTPD 100 (229)
T ss_dssp EEEE-S-GGG-SEEEE-TTS-EEEEETT
T ss_pred cccccCcccceeEEEecCCccEEEeccc
Confidence 678888 6667788888888888763
No 85
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=28.71 E-value=2.5e+02 Score=27.42 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=43.6
Q ss_pred cEEEEEcCCCe---EEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEE
Q 014027 96 RIIQAAAGAGR---TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYT 172 (432)
Q Consensus 96 ~i~~v~~g~~~---~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~ 172 (432)
.+..+.++..+ .+++..+|++..|-.+..- .++ .....+.+|..=+...+|++..|+||.
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt----------------~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~ 223 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLK----------------ALK-QMGYHFSDIIVHKGQTYALDSIGIVYW 223 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeee----------------Ecc-CCCceeeEEEEECCEEEEEcCCCeEEE
Confidence 34445666665 6777788888888643221 122 235568999999999999999999997
Q ss_pred EE
Q 014027 173 FS 174 (432)
Q Consensus 173 ~G 174 (432)
+.
T Consensus 224 i~ 225 (373)
T PLN03215 224 IN 225 (373)
T ss_pred Ee
Confidence 74
No 86
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=28.60 E-value=39 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=19.7
Q ss_pred ccceEEEEeCCCCEEEecCCCCcc
Q 014027 386 WNAHTFALTESGKLYAFGAGDKGQ 409 (432)
Q Consensus 386 G~~~~~~lt~~G~v~~wG~n~~gq 409 (432)
-+..+-+|..+|++.+||...+.|
T Consensus 78 kDECTplvF~n~~LvgWG~~ay~~ 101 (102)
T PF11399_consen 78 KDECTPLVFKNGKLVGWGDDAYSQ 101 (102)
T ss_pred CCceEEEEEECCEEEEEcHHhhhc
Confidence 456778899999999999987654
No 87
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=28.47 E-value=4.4e+02 Score=23.66 Aligned_cols=64 Identities=22% Similarity=0.198 Sum_probs=36.9
Q ss_pred EEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCC------CCcEE-----EEEcCCCeEEEEecCCCEEEEeCCC
Q 014027 55 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQ------GIRII-----QAAAGAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 55 ~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~------~~~i~-----~v~~g~~~~~~lt~~g~vy~~G~n~ 123 (432)
++..-..|.+|+.|+|+.-. .....|..+..-. .-+.+ +-.-|.-.+.+...+|++...|+|+
T Consensus 37 av~fhp~g~lyavgsnskt~------ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 37 AVAFHPAGGLYAVGSNSKTF------RICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred eEEecCCCceEEeccCCceE------EEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 45566889999999997411 1111222222100 00111 1123555688889999999999986
Q ss_pred C
Q 014027 124 F 124 (432)
Q Consensus 124 ~ 124 (432)
.
T Consensus 111 k 111 (350)
T KOG0641|consen 111 K 111 (350)
T ss_pred c
Confidence 5
No 88
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=26.47 E-value=5.5e+02 Score=24.13 Aligned_cols=14 Identities=7% Similarity=0.313 Sum_probs=10.6
Q ss_pred EEeCCCCEEEecCC
Q 014027 392 ALTESGKLYAFGAG 405 (432)
Q Consensus 392 ~lt~~G~v~~wG~n 405 (432)
++.-++++|+.|-.
T Consensus 299 ~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 299 LLLTGNNIFSINGE 312 (323)
T ss_pred eEEECCEEEEEecc
Confidence 45667889999865
No 89
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=25.93 E-value=1e+03 Score=27.23 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=78.0
Q ss_pred cccceEecCCCe-EEEEe--cCCcEEEEeCCCCCCcCC-CCCCCcccccccCcCCCCcEEEE-EcCCCeEEEE-ecCCCE
Q 014027 43 RENSQAIAGPGH-SIAVT--SKGVVYSFGSNSSGQLGH-GTTEEEWRPRPIRSLQGIRIIQA-AAGAGRTMLI-SDAGQV 116 (432)
Q Consensus 43 ~~i~~i~~G~~~-~~~l~--~~g~v~~~G~n~~gqlG~-~~~~~~~~p~~i~~~~~~~i~~v-~~g~~~~~~l-t~~g~v 116 (432)
..+.+++.-..| .+|++ .||.|-+|-.-.. .|. +......+.. +.+-++..| .|++.+.+++ ++||.|
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~rS~ltys----~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSARSELTYS----PEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceeeeeEEEe----ccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 455677777777 77776 6799999965432 122 1111111111 123355555 3444443333 788998
Q ss_pred EEEeCCCCCCccCCCCCcccccCCeeeccc-CCccEEEEeec----Cce-EEEEeCCCCEEEEEecCCCcCCCCCCCCcc
Q 014027 117 YAFGKDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQAAIG----NFF-TAVLSREGRVYTFSWGNDARLGHHTEPNDV 190 (432)
Q Consensus 117 y~~G~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~I~~v~~G----~~~-~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~ 190 (432)
-+.+-+.+.+ ......-.+++.+ +...++++.+- ..| .++.|..+.+..|+-... .
T Consensus 1123 ~~~~id~~~~-------~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~-----------~ 1184 (1431)
T KOG1240|consen 1123 RVLRIDHYNV-------SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR-----------H 1184 (1431)
T ss_pred EEEEcccccc-------ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh-----------h
Confidence 8887665411 0111111111111 12335554332 223 355788888888853321 1
Q ss_pred cccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014027 191 EPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 191 ~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
.--.+...+..--|..++.......++.=...| .+-.|-
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G-~l~lWD 1223 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWD 1223 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCc-eEEEEE
Confidence 111111123333466666655444444433355 777774
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=23.93 E-value=7e+02 Score=24.81 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=39.7
Q ss_pred ceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014027 159 FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 159 ~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
.+++++-.||-+|+-|.. .+++-.-+..+...-.+.. ....+|+.|+.+.+--...+..+++ .|..|-
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~~~a~Fp--ght~~vk~i~FsENGY~Lat~add~-~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQTNVAKFP--GHTGPVKAISFSENGYWLATAADDG-SVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCCccccccCC--CCCCceeEEEeccCceEEEEEecCC-eEEEEE
Confidence 456667778888844321 2333322222222111111 2345699999998877777776788 899995
No 91
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=23.77 E-value=4.9e+02 Score=25.29 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=9.1
Q ss_pred ceEEEEeCCCCEEEE
Q 014027 159 FFTAVLSREGRVYTF 173 (432)
Q Consensus 159 ~~~~~lt~~G~vy~~ 173 (432)
++.++.+++|+||++
T Consensus 377 ~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 377 DKLLIQARDGTVYAI 391 (394)
T ss_pred CEEEEEeCCceEEEE
Confidence 455566666666654
No 92
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=23.43 E-value=1.6e+02 Score=26.51 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=39.3
Q ss_pred EeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEcc
Q 014027 154 AAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (432)
Q Consensus 154 v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (432)
|.-...-.++.+.+|.||+|=+|.+|+.-.-. +. ..+....-|..+....+..+...+| .++.|-.
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~------~s-----~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~ 131 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRV------CS-----GEESIDLGIPNGRDSSLGCVGAQDG-RIRACNI 131 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHhh------hc-----ccccceeccccccccceeEEeccCC-ceeeecc
Confidence 33445566778999999999888666532211 11 1122233466666655555554588 8888843
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=23.20 E-value=9.9e+02 Score=25.98 Aligned_cols=241 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred eeeeeecceeeecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEE
Q 014027 31 LRFLLAGEACCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLI 110 (432)
Q Consensus 31 ~~~~~~~~~~~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~l 110 (432)
|..++.++ ....+|..++ -..+.++.....++|+|-.+. .-.-+-.+...+|.....=+.|.+++
T Consensus 66 l~ll~vs~-~lp~~I~ala-s~~~~vy~A~g~~i~~~~rgk-------------~i~~~~~~~~a~v~~l~~fGe~lia~ 130 (910)
T KOG1539|consen 66 LNLLFVSK-PLPDKITALA-SDKDYVYVASGNKIYAYARGK-------------HIRHTTLLHGAKVHLLLPFGEHLIAV 130 (910)
T ss_pred eEEEEecC-CCCCceEEEE-ecCceEEEecCcEEEEEEccc-------------eEEEEeccccceEEEEeeecceEEEE
Q ss_pred ecCCCEEEEeCCC-----CCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCC
Q 014027 111 SDAGQVYAFGKDS-----FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHT 185 (432)
Q Consensus 111 t~~g~vy~~G~n~-----~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~ 185 (432)
+.++.++.|-... +-|+..-.........-......-+.-++-..-|.=...=+...-.||
T Consensus 131 d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~-------------- 196 (910)
T KOG1539|consen 131 DISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVY-------------- 196 (910)
T ss_pred EccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEE--------------
Q ss_pred CCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEE
Q 014027 186 EPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA 265 (432)
Q Consensus 186 ~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~ 265 (432)
..+..+..+.. ....++.+|. .+.+. +| +|..+ +......+..|+...-+|..++
T Consensus 197 -~f~~~~s~IT~-ieqsPaLDVV-----aiG~~---~G-~Viif--------------NlK~dkil~sFk~d~g~VtslS 251 (910)
T KOG1539|consen 197 -TFQEFFSRITA-IEQSPALDVV-----AIGLE---NG-TVIIF--------------NLKFDKILMSFKQDWGRVTSLS 251 (910)
T ss_pred -EecccccceeE-eccCCcceEE-----EEecc---Cc-eEEEE--------------EcccCcEEEEEEccccceeEEE
Q ss_pred cC--CceEEEEeCC-CCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEE
Q 014027 266 AG--AWHAAVVGQD-GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVV 326 (432)
Q Consensus 266 ~G--~~h~~~lt~~-g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~l 326 (432)
-+ ..-.++.... |.+..|--+..--...-.......+.....+.+.+|. +.+|.+.++-+
T Consensus 252 FrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl-~ta~~DnSlk~ 314 (910)
T KOG1539|consen 252 FRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVL-VTAGADNSLKV 314 (910)
T ss_pred eccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceE-eeccCCCceeE
No 94
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=23.13 E-value=2.5e+02 Score=26.79 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=30.3
Q ss_pred ccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEe-cCCCC
Q 014027 358 NVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF-GAGDK 407 (432)
Q Consensus 358 ~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~w-G~n~~ 407 (432)
....|..|... .|..|.--.-++|+..++.|+++|.=|.+ |.|..
T Consensus 217 Pts~PevIa~i-----nV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaa 262 (442)
T PF15416_consen 217 PTSAPEVIADI-----NVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAA 262 (442)
T ss_pred CCCCceEEEee-----eeccCcccccccCcceeEEeccCCceEEEecCCcc
Confidence 33455555443 45555544556799999999999987765 87753
No 95
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.09 E-value=7e+02 Score=24.22 Aligned_cols=118 Identities=16% Similarity=0.196 Sum_probs=55.9
Q ss_pred cccceEecCCC-eE-EEEecCCc-EEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCC-eEEEEecCCCEEE
Q 014027 43 RENSQAIAGPG-HS-IAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG-RTMLISDAGQVYA 118 (432)
Q Consensus 43 ~~i~~i~~G~~-~~-~~l~~~g~-v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~-~~~~lt~~g~vy~ 118 (432)
+.+..|..|.. |. +..+.||+ +|+.+. .|. -..+...+.+.+..|..|.. +.++++.||+...
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~-----------vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGT-----------VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSE-----------EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCe-----------EEEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 45677877654 54 55678786 788753 232 22333344557778877765 6888999999666
Q ss_pred EeCCCCCCccCCCCCc-c-cccCCe--eecccCCccEEEEeecCc---eEEEEeCCCCEEEE
Q 014027 119 FGKDSFGEAEYGVQGT-K-LVTSPQ--LVESLKNIFVVQAAIGNF---FTAVLSREGRVYTF 173 (432)
Q Consensus 119 ~G~n~~gqlg~~~~~~-~-~~~~p~--~v~~~~~~~I~~v~~G~~---~~~~lt~~G~vy~~ 173 (432)
-++...+++..-+..+ + ....|. ........++..|..... +.+.+.+.+++|.-
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 5554444433221101 0 001111 000012335556654333 44556677888744
No 96
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=22.43 E-value=1e+03 Score=25.80 Aligned_cols=122 Identities=12% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEE--ecccCCCcEEEEecCCC--cEEEEecCCCEEEEeCCCCCC
Q 014027 267 GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKV--VQALNDVKAIHVATGDY--TTFVVSEDGDVYSFGCGESAS 342 (432)
Q Consensus 267 G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~--i~~~~~~~i~~i~~G~~--~s~~lt~~g~vy~~G~n~~gq 342 (432)
...+.+++|++|++|.+-.++-- .|. ....|.. +...++.+|+.+.+... +.+++|+.|.++..-....-.
T Consensus 535 t~d~LllfTs~Gr~yrf~v~eIP-~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~ 609 (735)
T TIGR01062 535 SNQKVVFIDSTGRSYALDPDNLP-SAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIA 609 (735)
T ss_pred CCCEEEEEECCCeEEEEEhHhcC-cCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccc
Confidence 34468899999999999765432 122 2223322 23345667887777654 467788889777765443321
Q ss_pred CCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeecccccc-ceEEEEeCCCCEEEecCCCCcccCC
Q 014027 343 LGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWN-AHTFALTESGKLYAFGAGDKGQLGI 412 (432)
Q Consensus 343 lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~-~~~~~lt~~G~v~~wG~n~~gqLG~ 412 (432)
...+. ..+..+... ..++.+.... +. .+.++++++|++..+-.++--++|.
T Consensus 610 ~~RaG---------------Kgvi~Lk~~-d~lv~v~~v~---~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 610 RNKAG---------------KALINLPEN-ASVIAPLPVN---GDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred cCcCC---------------eEEEEeCCC-CEEEEEEEEc---CCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 11111 111111111 2222222110 33 3577899999999998776666554
No 97
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=22.13 E-value=5.6e+02 Score=22.76 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCC-EEEEeCCCCCCccCCCCCc
Q 014027 56 IAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQ-VYAFGKDSFGEAEYGVQGT 134 (432)
Q Consensus 56 ~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~-vy~~G~n~~gqlg~~~~~~ 134 (432)
++++.+|++|+--.+......... ..-.++..-.......=....-..++++.||+ ||+.-....--.-......
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~----g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~ 166 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDP----GSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDAD 166 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGS----EEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEEcCCCCEEEEecCCCccccccc----cceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEecccc
Q ss_pred cc-ccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEec--c
Q 014027 135 KL-VTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG--Y 211 (432)
Q Consensus 135 ~~-~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g--~ 211 (432)
.. ...+..+..+.... |.--.++++.+|+||+..+....-.-..+......-.. +....+..++-| .
T Consensus 167 ~~~~~~~~~~~~~~~~~------g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~----~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 167 GGELSNRRVFIDFPGGP------GYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE----LPVPRPTNCAFGGPD 236 (246)
T ss_dssp TCCEEEEEEEEE-SSSS------CEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-----SSSSEEEEEEESTT
T ss_pred ccceeeeeeEEEcCCCC------cCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc----CCCCCEEEEEEECCC
Q ss_pred cceeEEEe
Q 014027 212 CYLLALAC 219 (432)
Q Consensus 212 ~~~~~l~~ 219 (432)
...+++|.
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
No 98
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=21.84 E-value=1.1e+03 Score=26.07 Aligned_cols=169 Identities=10% Similarity=0.016 Sum_probs=84.1
Q ss_pred cEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEE
Q 014027 150 FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSV 229 (432)
Q Consensus 150 ~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~ 229 (432)
+...|+++. ..++-.+++++.+|.-. |. .-+..+.+...|..+.|-......+.- .||.|.+|
T Consensus 171 r~~~v~a~~--v~imR~Nnr~lf~G~t~----G~---------V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitC 233 (1118)
T KOG1275|consen 171 RTTNVSASG--VTIMRYNNRNLFCGDTR----GT---------VFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITC 233 (1118)
T ss_pred eeeeccCCc--eEEEEecCcEEEeeccc----ce---------EEeecCCcCceeeeeeccccceeeeec--cCCeEEEe
Confidence 455555544 55666777877776432 11 111111222335566665555555555 77799999
Q ss_pred ccCC-CCCcCCCCCCCC--------CCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCc---ccCCCCC
Q 014027 230 GCGL-GGKLGHGSRTDE--------KHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGC---LGHGNEE 297 (432)
Q Consensus 230 G~n~-~gqlg~~~~~~~--------~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gq---lg~~~~~ 297 (432)
|... ++-+........ ..|..+...+ .+.+.--.....++++.. .|.....+ |+.+.
T Consensus 234 G~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P----~flrf~Psl~t~~~V~S~-----sGq~q~vd~~~lsNP~-- 302 (1118)
T KOG1275|consen 234 GYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP----QFLRFHPSLTTRLAVTSQ-----SGQFQFVDTATLSNPP-- 302 (1118)
T ss_pred ecccccccccccchhhhhhhhhhhccCCcccccCc----hhhhhcccccceEEEEec-----ccceeeccccccCCCc--
Confidence 9642 333443333221 2222222111 122222222223333222 23333333 22111
Q ss_pred CccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCC
Q 014027 298 CESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNA 347 (432)
Q Consensus 298 ~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~ 347 (432)
.......+.-....--+|++..+..++...+|.|-.|-.+...|.....
T Consensus 303 -~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~~s 351 (1118)
T KOG1275|consen 303 -AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNEYS 351 (1118)
T ss_pred -cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCCCc
Confidence 1111111222234567889999999999999999999988877766554
No 99
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=21.48 E-value=1.1e+03 Score=26.03 Aligned_cols=64 Identities=9% Similarity=0.147 Sum_probs=33.3
Q ss_pred EEEEecCCcEEEEeCCCCCCcC-CCCCCCc-ccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCC
Q 014027 55 SIAVTSKGVVYSFGSNSSGQLG-HGTTEEE-WRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 122 (432)
Q Consensus 55 ~~~l~~~g~v~~~G~n~~gqlG-~~~~~~~-~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n 122 (432)
-+-+|.|.+++.|-.|.....- .++.... .+-+.+.+-.+.-+. -=.|.+++...-++|..|-.
T Consensus 95 rcWiT~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs----~i~hlL~vAT~~e~~ilgvs 160 (1263)
T COG5308 95 RCWITNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVS----RISHLLFVATEKEVMILGVS 160 (1263)
T ss_pred ceEEEcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHH----hhhhhhhhhhhheeeEEEEE
Confidence 3567999999999987543221 1111111 111111111111111 12488888888899988843
Done!