Your job contains 1 sequence.
>014028
MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI
LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL
CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA
CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM
KGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMV
ADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMF
QLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRA
SQSGGGMNLHRC
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014028
(432 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164713 - symbol:OBE2 "OBERON2" species:3702 "... 1724 1.5e-177 1
UNIPROTKB|Q84N37 - symbol:PVIP "OBERON-like protein" spec... 1694 2.3e-174 1
TAIR|locus:2077362 - symbol:OBE1 "OBERON1" species:3702 "... 1663 4.4e-171 1
UNIPROTKB|Q84N38 - symbol:PVIP "OBERON-like protein" spec... 1625 4.7e-167 1
TAIR|locus:2087403 - symbol:TTA2 "TITANIA 2" species:3702... 706 6.9e-69 1
TAIR|locus:2006837 - symbol:TTA1 "TITANIA 1" species:3702... 578 4.2e-56 1
TAIR|locus:2173004 - symbol:VIN3 "VERNALIZATION INSENSITI... 159 2.6e-08 1
TAIR|locus:2094859 - symbol:VRN5 "AT3G24440" species:3702... 146 6.7e-07 1
TAIR|locus:2201056 - symbol:AT1G05410 "AT1G05410" species... 138 3.5e-06 1
TAIR|locus:2128946 - symbol:VEL1 "vernalization5/VIN3-lik... 123 0.00028 1
>TAIR|locus:2164713 [details] [associations]
symbol:OBE2 "OBERON2" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046740 "spread of virus in host, cell
to cell" evidence=IMP] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IGI] [GO:0010071 "root meristem
specification" evidence=IGI] [GO:0010078 "maintenance of root
meristem identity" evidence=IGI] [GO:0010492 "maintenance of shoot
apical meristem identity" evidence=IGI] [GO:0042803 "protein
homodimerization activity" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010468 "regulation of gene expression"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001965 PROSITE:PS50016 SMART:SM00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0042803 GO:GO:0046872
GO:GO:0008270 GO:GO:0046982 PROSITE:PS01359 GO:GO:0080022
GO:GO:0010492 GO:GO:0010468 GO:GO:0010071 GO:GO:0010078
EMBL:AB023039 GO:GO:0046740 HOGENOM:HOG000029805
ProtClustDB:CLSN2684317 InterPro:IPR004082 Pfam:PF07227
PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AK317346 EMBL:AK317672
EMBL:AK220595 EMBL:AK227275 IPI:IPI00541622 RefSeq:NP_001032031.1
RefSeq:NP_199627.1 UniGene:At.28240 ProteinModelPortal:Q9LUB7
SMR:Q9LUB7 STRING:Q9LUB7 PaxDb:Q9LUB7 PRIDE:Q9LUB7
EnsemblPlants:AT5G48160.1 EnsemblPlants:AT5G48160.2 GeneID:834868
KEGG:ath:AT5G48160 TAIR:At5g48160 eggNOG:NOG302251
InParanoid:Q9LUB7 OMA:ANEARQE PhylomeDB:Q9LUB7
Genevestigator:Q9LUB7 Uniprot:Q9LUB7
Length = 574
Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
Identities = 327/428 (76%), Positives = 371/428 (86%)
Query: 1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
MHRLP+EFL+ELKNGL++ILE N + +EF+ LQ+ VQ R+DL++ TL+RAHRV LEI
Sbjct: 108 MHRLPDEFLDELKNGLKSILEGNV-AQSVDEFMFLQKVVQSRTDLSSVTLVRAHRVQLEI 166
Query: 61 LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
LVAIN+GIQAFLHPNISLSQ SLIE+FVYKRCRNIACQ QLPADDC C+ICT+R GFCNL
Sbjct: 167 LVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQLPADDCYCDICTNRKGFCNL 226
Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGAC-PSEMLFRCR 179
CMC ICNKFDF VNTCRWIGCDLCSHWTHTDCAIRDGQI G SAK+ P E++F+CR
Sbjct: 227 CMCTICNKFDFSVNTCRWIGCDLCSHWTHTDCAIRDGQITTGSSAKNNTSGPGEIVFKCR 286
Query: 180 ACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEK 239
ACNRTSELLGWVKDVFQHCAP WDRE+LM+ELDFVSRIFRGSED RGRKL+WKCEEL++K
Sbjct: 287 ACNRTSELLGWVKDVFQHCAPNWDRESLMKELDFVSRIFRGSEDQRGRKLFWKCEELIDK 346
Query: 240 MKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEM 299
+KGGL E+ A + IL+FFQE+E DS KS ENGE GRL+AP +ACNRIAEVVQE +RKME+
Sbjct: 347 IKGGLAEATAAKLILMFFQEIESDSAKSFENGEGGRLMAPQDACNRIAEVVQETLRKMEI 406
Query: 300 VADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADM 359
VA+EKMRMFKKAR++L+ CDRELEDKA+EV+EL+ ER VRLKQAEADM
Sbjct: 407 VAEEKMRMFKKARMALETCDRELEDKAKEVSELKAERQKKKLQIDELERIVRLKQAEADM 466
Query: 360 FQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSR 419
FQLKANEAKREA+RLQRI LAK DKSEEEYAS+YLK RLSEAEAEKQYLFEKIKLQE+SR
Sbjct: 467 FQLKANEAKREADRLQRIVLAKMDKSEEEYASNYLKQRLSEAEAEKQYLFEKIKLQENSR 526
Query: 420 -ASQSGGG 426
ASQS GG
Sbjct: 527 VASQSSGG 534
>UNIPROTKB|Q84N37 [details] [associations]
symbol:PVIP "OBERON-like protein" species:3888 "Pisum
sativum" [GO:0046740 "spread of virus in host, cell to cell"
evidence=ISS] PROSITE:PS50016 GO:GO:0007275 GO:GO:0005634
GO:GO:0046872 PROSITE:PS01359 GO:GO:0046740 InterPro:IPR004082
Pfam:PF07227 PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AY271743
Uniprot:Q84N37
Length = 513
Score = 1694 (601.4 bits), Expect = 2.3e-174, P = 2.3e-174
Identities = 321/426 (75%), Positives = 365/426 (85%)
Query: 1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
MHRLP+EFL+ELKNGLRAILE GS R+EF LQ+ VQ RSDLTAKTLIRAHRV LEI
Sbjct: 52 MHRLPDEFLDELKNGLRAILEGGNGSQHRDEFFILQKLVQSRSDLTAKTLIRAHRVQLEI 111
Query: 61 LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
LV+IN+GIQ FLHP+ISLSQTSLIE+F+YKRCRNIACQ QLPAD+C+ + CT+ NGFCNL
Sbjct: 112 LVSINTGIQGFLHPSISLSQTSLIEIFLYKRCRNIACQNQLPADECSXDTCTNNNGFCNL 171
Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA 180
CMCVIC+KFDFEVNTCRWIGCDL SHWTHTDCAIR+ ICMGPS KSG+ PSEM+FRC+A
Sbjct: 172 CMCVICSKFDFEVNTCRWIGCDLXSHWTHTDCAIREQLICMGPSVKSGSGPSEMVFRCQA 231
Query: 181 CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240
C+ TS LLGWVKDVFQHCAP+WD +AL+RELDFVSRIF GS+D RG L+WKC++L EK+
Sbjct: 232 CSXTSXLLGWVKDVFQHCAPSWDGDALIRELDFVSRIFHGSKDQRGMNLFWKCDDLKEKL 291
Query: 241 KGGLPESMA-CRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEM 299
K +S A CR IL+ FQEL++D+ KSLEN E+GRLIAP EACNRIAEVVQEAIRKME
Sbjct: 292 KSRKMDSKAACRAILMVFQELDLDNSKSLENAESGRLIAPQEACNRIAEVVQEAIRKMEF 351
Query: 300 VADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADM 359
VADEKMRMFKKAR++++ACDREL DKARE +L++ER VRLK AEADM
Sbjct: 352 VADEKMRMFKKARIAVEACDRELADKAREAGDLKVERQKKKSQIEELERIVRLKNAEADM 411
Query: 360 FQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSR 419
FQLKANEAKREAERLQRIALAK+DKSEEEY S+YLK +LSEAEAEKQYL+EKIKLQESSR
Sbjct: 412 FQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQKLSEAEAEKQYLYEKIKLQESSR 471
Query: 420 ASQSGG 425
SQS G
Sbjct: 472 LSQSSG 477
>TAIR|locus:2077362 [details] [associations]
symbol:OBE1 "OBERON1" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0046740 "spread of virus in host, cell
to cell" evidence=IMP] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IGI] [GO:0010071 "root meristem
specification" evidence=IGI] [GO:0010078 "maintenance of root
meristem identity" evidence=IGI] [GO:0010492 "maintenance of shoot
apical meristem identity" evidence=IGI] [GO:0042803 "protein
homodimerization activity" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010468 "regulation of gene expression"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0031347 "regulation of defense response" evidence=IMP]
[GO:0009536 "plastid" evidence=IDA] InterPro:IPR001965
PROSITE:PS50016 SMART:SM00249 GO:GO:0005634 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0042803 GO:GO:0046872
GO:GO:0008270 GO:GO:0046982 PROSITE:PS01359 GO:GO:0080022
EMBL:AC013483 GO:GO:0010492 GO:GO:0010468 EMBL:AC009176
GO:GO:0010071 GO:GO:0031347 GO:GO:0010078 GO:GO:0046740
EMBL:DQ059085 EMBL:AY045899 EMBL:AY113947 IPI:IPI00522384
RefSeq:NP_566320.1 UniGene:At.25420 ProteinModelPortal:Q9S736
SMR:Q9S736 IntAct:Q9S736 STRING:Q9S736 PaxDb:Q9S736 PRIDE:Q9S736
EnsemblPlants:AT3G07780.1 GeneID:819969 KEGG:ath:AT3G07780
TAIR:At3g07780 eggNOG:NOG325001 HOGENOM:HOG000029805
InParanoid:Q9S736 OMA:ECEREVE PhylomeDB:Q9S736
ProtClustDB:CLSN2684317 Genevestigator:Q9S736 InterPro:IPR004082
Pfam:PF07227 PIRSF:PIRSF025218 PRINTS:PR01544 Uniprot:Q9S736
Length = 566
Score = 1663 (590.5 bits), Expect = 4.4e-171, P = 4.4e-171
Identities = 311/417 (74%), Positives = 360/417 (86%)
Query: 1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
MHRLPEE+LEELKNGL+AILE NG + +EF+ LQ+FVQ RSDLT+KTL+RAHRV LE+
Sbjct: 107 MHRLPEEYLEELKNGLKAILEGNG-AQPIDEFMFLQKFVQTRSDLTSKTLVRAHRVQLEV 165
Query: 61 LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
LV IN+GIQAFLHPNI+LSQ+SLIE+FVYKRCRNIACQ +LPAD C CEIC +R GFCNL
Sbjct: 166 LVVINTGIQAFLHPNINLSQSSLIEIFVYKRCRNIACQNELPADGCPCEICANRKGFCNL 225
Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA 180
CMCVICNKFDF VNTCRWIGCD+CSHWTHTDCAIRDG+I MG S KS + EMLF+CRA
Sbjct: 226 CMCVICNKFDFAVNTCRWIGCDVCSHWTHTDCAIRDGEISMGVSPKSVSGMGEMLFKCRA 285
Query: 181 CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240
CN TSELLGWVKDVFQHCAP WDRE+LM+ELDFVSRIFRGSED RGRKL+WKCEEL+EK+
Sbjct: 286 CNHTSELLGWVKDVFQHCAPNWDRESLMKELDFVSRIFRGSEDTRGRKLFWKCEELMEKI 345
Query: 241 KGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMV 300
KGGL E+ A + IL+FFQE+E+DSPKSLE+GE G IAP +ACNRIAEVV+E +RKME+V
Sbjct: 346 KGGLAEATAAKLILMFFQEIELDSPKSLESGEGGGTIAPQDACNRIAEVVKETLRKMEIV 405
Query: 301 ADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADMF 360
+EK RM+KKAR+ L+ C+RE+E+KA++V ELQMER VRLKQAEA+MF
Sbjct: 406 GEEKTRMYKKARMGLEECEREVEEKAKQVAELQMERQKKKQQIEEVERIVRLKQAEAEMF 465
Query: 361 QLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQES 417
QLKANEAK EAERL+RI AK +K+EEEYAS+YLKLRLSEAEAEK+YLFEKIK QES
Sbjct: 466 QLKANEAKVEAERLERIVKAKKEKTEEEYASNYLKLRLSEAEAEKEYLFEKIKEQES 522
>UNIPROTKB|Q84N38 [details] [associations]
symbol:PVIP "OBERON-like protein" species:4100 "Nicotiana
benthamiana" [GO:0046740 "spread of virus in host, cell to cell"
evidence=ISS] InterPro:IPR001965 PROSITE:PS50016 SMART:SM00249
GO:GO:0007275 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
PROSITE:PS01359 GO:GO:0046740 InterPro:IPR004082 Pfam:PF07227
PIRSF:PIRSF025218 PRINTS:PR01544 EMBL:AY271742
ProteinModelPortal:Q84N38 Uniprot:Q84N38
Length = 549
Score = 1625 (577.1 bits), Expect = 4.7e-167, P = 4.7e-167
Identities = 310/428 (72%), Positives = 353/428 (82%)
Query: 1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
M LP+E+LE+ K+ LR ILE GG+ REEFL LQR V R DLT TLI HR LEI
Sbjct: 105 MRNLPDEYLEKFKHELRVILEGLGGAQHREEFLFLQRLVNSRGDLTDGTLIITHRTQLEI 164
Query: 61 LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
LVAI +GIQAFLHP++SLSQ SLI++F+YKRCRNIAC + LPA++C+CEIC +NGFCNL
Sbjct: 165 LVAIKTGIQAFLHPSVSLSQASLIDIFLYKRCRNIACGSMLPAEECSCEICAKKNGFCNL 224
Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA 180
CMCVIC KFDFEVN+CRWIGCDLCSHWTHTDCAI +GQI GPS K+GA +E LFRC A
Sbjct: 225 CMCVICYKFDFEVNSCRWIGCDLCSHWTHTDCAISNGQIGTGPSVKNGASSAETLFRCHA 284
Query: 181 CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240
C+RTSELLGWVKDVFQHCAP+WD EA +RELD+V RIF+ SED RGRKL+WKCEEL+EK+
Sbjct: 285 CSRTSELLGWVKDVFQHCAPSWDAEAFVRELDYVRRIFQRSEDARGRKLFWKCEELIEKL 344
Query: 241 KGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMV 300
K G+ + MAC+ IL FFQEL+VD KS +N E GRLIAP EA N+IA+VVQEAIRKME V
Sbjct: 345 KNGVADPMACKVILSFFQELDVDPSKSQDNDEGGRLIAPEEAFNKIADVVQEAIRKMEAV 404
Query: 301 ADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADMF 360
A+EKMRM KKARL+LDACD+EL+DKAREVT L+MER VRLKQAEADMF
Sbjct: 405 AEEKMRMVKKARLALDACDQELKDKAREVTSLKMERQRKKQQIDELESIVRLKQAEADMF 464
Query: 361 QLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRA 420
LKA EA+REAERLQRIALAKT+KSEE+YAS YLK RLSEAEAEKQYLFEKIKLQESSRA
Sbjct: 465 DLKAGEARREAERLQRIALAKTEKSEEDYASRYLKQRLSEAEAEKQYLFEKIKLQESSRA 524
Query: 421 SQSGGGMN 428
SQS G N
Sbjct: 525 SQSSAGGN 532
>TAIR|locus:2087403 [details] [associations]
symbol:TTA2 "TITANIA 2" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein
binding" evidence=IPI] [GO:0001708 "cell fate specification"
evidence=IGI] [GO:0009880 "embryonic pattern specification"
evidence=IGI] [GO:0090421 "embryonic meristem initiation"
evidence=IGI] PROSITE:PS50016 GO:GO:0005634 GO:GO:0001708
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872 EMBL:AL163818
PROSITE:PS01359 GO:GO:0009880 InterPro:IPR004082 Pfam:PF07227
PRINTS:PR01544 HOGENOM:HOG000239893 GO:GO:0090421 EMBL:BT005768
EMBL:AK228553 IPI:IPI00519092 IPI:IPI01018460 PIR:T49191
RefSeq:NP_191909.1 UniGene:At.24203 UniGene:At.69654
ProteinModelPortal:Q84TI3 STRING:Q84TI3 PaxDb:Q84TI3 PRIDE:Q84TI3
EnsemblPlants:AT3G63500.2 GeneID:825525 KEGG:ath:AT3G63500
TAIR:At3g63500 eggNOG:NOG264321 InParanoid:Q9LY65 OMA:SACMCLV
Genevestigator:Q84TI3 Uniprot:Q84TI3
Length = 1162
Score = 706 (253.6 bits), Expect = 6.9e-69, P = 6.9e-69
Identities = 153/423 (36%), Positives = 238/423 (56%)
Query: 2 HRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEIL 61
H +P + LK +R ++ + Q F Q +Q R+D+T + L ++HR LEIL
Sbjct: 720 HEMPTRNITSLKENIRQMMLNMDKNVQLGAF---QDALQNRTDITLELLTKSHRAQLEIL 776
Query: 62 VAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLC 121
VA+ SG FL + S+S + L E+F+ RC+N++C+ LP D+C C +C+ ++GFC+ C
Sbjct: 777 VALKSGRSDFLLLDNSISSSHLAEIFMNMRCKNLSCRVLLPVDECDCRVCSRKDGFCSAC 836
Query: 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRAC 181
MC++C+ FD NTC W+GCD+C HW HTDC I++ I G +A +EM F C AC
Sbjct: 837 MCLVCSNFDMASNTCSWVGCDVCLHWCHTDCGIKESYIRNGINASGAPGMTEMQFHCVAC 896
Query: 182 NRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMK 241
N SE+ G+VK+VF + A W E +EL++V++IF S+D RG++L + +L +K
Sbjct: 897 NHPSEMFGFVKEVFLNFAREWKFERFCKELEYVNKIFSSSKDSRGKQLRQAADAMLASLK 956
Query: 242 G---GLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKME 298
GLPE AC IL F + + +P E P R Q+
Sbjct: 957 SKLIGLPE--ACNRILGFISDCDSSTPA--ETSAPFIYEQPKPRHER-GSPSQDTAWLRS 1011
Query: 299 MVADEKMRMFKKARLSLDACDRELEDKAREVTELQMER-TXXXXXXXXXXXXVRLKQAEA 357
+ +D K++ DA RE + + V E+++ER + VR+KQAEA
Sbjct: 1012 VCSDNPHNQLKRSASVADAFHRERQVEICAV-EMELERGSPKEPRFEELESIVRMKQAEA 1070
Query: 358 DMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIK-LQE 416
+MFQ +A++A+REAE L+RIA+AK +K EEEY KL + +A+ ++ +E+++ +Q
Sbjct: 1071 EMFQGRADDARREAEGLKRIAIAKKEKIEEEYNRRMGKLSMEDAQERRRRRYEELEAMQR 1130
Query: 417 SSR 419
R
Sbjct: 1131 GQR 1133
>TAIR|locus:2006837 [details] [associations]
symbol:TTA1 "TITANIA 1" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0005515 "protein
binding" evidence=IPI] [GO:0001708 "cell fate specification"
evidence=IGI] [GO:0009880 "embryonic pattern specification"
evidence=IGI] [GO:0090421 "embryonic meristem initiation"
evidence=IGI] PROSITE:PS50016 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0001708 GO:GO:0046872
PROSITE:PS01359 GO:GO:0009880 EMBL:AC006917 ProtClustDB:CLSN2684317
InterPro:IPR004082 Pfam:PF07227 PIRSF:PIRSF025218 PRINTS:PR01544
EMBL:AY042810 EMBL:AY081688 IPI:IPI00547684 PIR:F86281
RefSeq:NP_563958.1 UniGene:At.24757 UniGene:At.72881
ProteinModelPortal:Q94B71 IntAct:Q94B71 STRING:Q94B71 PRIDE:Q94B71
EnsemblPlants:AT1G14740.1 GeneID:838039 KEGG:ath:AT1G14740
TAIR:At1g14740 eggNOG:NOG259684 HOGENOM:HOG000239893
InParanoid:Q94B71 OMA:YGVTDYS PhylomeDB:Q94B71
Genevestigator:Q94B71 GO:GO:0090421 Uniprot:Q94B71
Length = 733
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 129/401 (32%), Positives = 208/401 (51%)
Query: 4 LPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVA 63
+ +E LE K LR +++ ++E+ + LQ + RSDL+ +TL + + L+ILVA
Sbjct: 323 MADETLESAKEYLRNLID---SPEKKEKLVNLQNQIDKRSDLSKETLSKCVKDQLDILVA 379
Query: 64 INSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMC 123
+ +G++ FL I + L+E+F++ RCRN+ C++ LP DDC C+IC++ GFC+ CMC
Sbjct: 380 VRTGLKYFLSGKIRIPMNELVEIFLFLRCRNVNCKSLLPVDDCECKICSNNKGFCSSCMC 439
Query: 124 VICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183
+C +FD NTC W+GCD+CSHW H C I+ I G S K +EM+F C C
Sbjct: 440 PVCLRFDSASNTCSWVGCDVCSHWCHAACGIQKNLIKPGHSLKGQRGTTEMMFHCIGCAH 499
Query: 184 TSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGG 243
SE+ G+VKDVF CA W E L++ELD V ++FRGS+D +G+ L+ K E+++K++
Sbjct: 500 KSEMFGFVKDVFVCCAKNWGLETLIKELDCVRKVFRGSDDAKGKALHLKANEMVKKLESK 559
Query: 244 LPESM-ACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVAD 302
+ A I+ FF E S + + +A + + V + K D
Sbjct: 560 QISPLDASNFIIQFFNYAE--SIPEIPDPPRELTVAAETSYRKDEASVTPSTSK-----D 612
Query: 303 EKMRMFKKARLSLDACDRELEDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADMFQL 362
+K + F +++ D LE R + E + R K+ M ++
Sbjct: 613 QKKKSFALTDAMMNSFD-SLESMVR-IKEAET-RMFQKKADEARIEAESFKR----MIEM 665
Query: 363 KANEAKRE-AERLQRIALAKTDKSEEEYASSYLKLRLSEAE 402
K + + E E+L R+ L +T++ KL S +
Sbjct: 666 KTEKMEEEYTEKLARLCLQETEERRRNKLEELKKLENSHCD 706
Score = 142 (55.0 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 350 VRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLF 409
VR+K+AE MFQ KA+EA+ EAE +R+ KT+K EEEY +L L E E ++
Sbjct: 635 VRIKEAETRMFQKKADEARIEAESFKRMIEMKTEKMEEEYTEKLARLCLQETEERRRNKL 694
Query: 410 EKIKLQESS 418
E++K E+S
Sbjct: 695 EELKKLENS 703
>TAIR|locus:2173004 [details] [associations]
symbol:VIN3 "VERNALIZATION INSENSITIVE 3" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0010048 "vernalization response"
evidence=IEP] [GO:0001666 "response to hypoxia" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001965
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50016 PROSITE:PS50853
SMART:SM00060 SMART:SM00249 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:2.60.40.10 InterPro:IPR013783
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 SUPFAM:SSF49265
GO:GO:0008270 GO:GO:0001666 GO:GO:0006351 PROSITE:PS01359
GO:GO:0010048 EMBL:AB016891 InterPro:IPR004082 Pfam:PF07227
EMBL:AY446960 IPI:IPI00545823 RefSeq:NP_200548.2 UniGene:At.22442
UniGene:At.66759 ProteinModelPortal:Q9FIE3 SMR:Q9FIE3
DIP:DIP-48611N IntAct:Q9FIE3 STRING:Q9FIE3
EnsemblPlants:AT5G57380.1 GeneID:835844 KEGG:ath:AT5G57380
TAIR:At5g57380 eggNOG:NOG263359 HOGENOM:HOG000238791 OMA:CCENLAC
PhylomeDB:Q9FIE3 ProtClustDB:CLSN2925621 Genevestigator:Q9FIE3
Uniprot:Q9FIE3
Length = 620
Score = 159 (61.0 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 44/153 (28%), Positives = 66/153 (43%)
Query: 92 CRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTD 151
C N+AC+ L DD FC C C IC KFD + W+ CD C H +
Sbjct: 130 CENLACRAALGCDDT----------FCRRCSCCICQKFDDNKDPSLWLTCDACGSSCHLE 179
Query: 152 CAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLG-WVKDVFQHCAPAWDR-EALMR 209
C ++ + +G G F C C + ++LLG W K V A R + L
Sbjct: 180 CGLKQDRYGIGSDDLDGR------FYCAYCGKDNDLLGCWRKQV--KVAKETRRVDVLCY 231
Query: 210 ELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKG 242
L ++ RG+ + R L +E ++K++G
Sbjct: 232 RLSLGQKLLRGTT--KYRNLLELMDEAVKKLEG 262
>TAIR|locus:2094859 [details] [associations]
symbol:VRN5 "AT3G24440" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009909 "regulation of flower
development" evidence=IGI;RCA] [GO:0010048 "vernalization response"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IMP]
[GO:0016571 "histone methylation" evidence=RCA;IMP] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0009933 "meristem structural organization" evidence=RCA]
[GO:0010162 "seed dormancy process" evidence=RCA] [GO:0010182
"sugar mediated signaling pathway" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA]
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853 SMART:SM00060
EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:2.60.40.10
InterPro:IPR013783 SUPFAM:SSF49265 GO:GO:0010048 GO:GO:0009909
GO:GO:0016571 EMBL:AP002048 InterPro:IPR004082 Pfam:PF07227
HOGENOM:HOG000238791 EMBL:EF064791 IPI:IPI00536359
RefSeq:NP_189087.1 UniGene:At.37527 ProteinModelPortal:Q9LHF5
SMR:Q9LHF5 DIP:DIP-48608N STRING:Q9LHF5 EnsemblPlants:AT3G24440.1
GeneID:822034 KEGG:ath:AT3G24440 TAIR:At3g24440 eggNOG:NOG319546
InParanoid:Q9LHF5 OMA:DEIEDSC PhylomeDB:Q9LHF5
ProtClustDB:CLSN2684509 Genevestigator:Q9LHF5 Uniprot:Q9LHF5
Length = 602
Score = 146 (56.5 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 47/178 (26%), Positives = 74/178 (41%)
Query: 92 CRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCD--------L 143
C+N +C+ +P +D FC C C +C+ FD + W+ C+
Sbjct: 49 CKNASCRANVPKED----------SFCKRCSCCVCHNFDENKDPSLWLVCEPEKSDDVEF 98
Query: 144 CSHWTHTDCAIRD---GQICMGPSAKSGACPSEMLFRCRACNRTSELLG-WVKDVFQHCA 199
C H +CA R+ G I +G K C F C +C + S++LG W K +
Sbjct: 99 CGLSCHIECAFREVKVGVIALGNLMKLDGC-----FCCYSCGKVSQILGCWKKQLVA-AK 152
Query: 200 PAWDREALMRELDFVSRIFRG-SEDPRGRKLYWKCEELLEKMKGGL--PESMACRGIL 254
A R+ L +D R+ G S ++ + +LE G L P + RGI+
Sbjct: 153 EARRRDGLCYRIDLGYRLLNGTSRFSELHEIVRAAKSMLEDEVGPLDGPTARTDRGIV 210
>TAIR|locus:2201056 [details] [associations]
symbol:AT1G05410 "AT1G05410" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR004082 Pfam:PF07227
UniGene:At.23911 UniGene:At.66904 EMBL:AY065014 EMBL:AY074502
EMBL:AY096601 EMBL:AY142043 IPI:IPI00541391 RefSeq:NP_563738.1
IntAct:Q8VZE5 PRIDE:Q8VZE5 EnsemblPlants:AT1G05410.1 GeneID:837042
KEGG:ath:AT1G05410 TAIR:At1g05410 InParanoid:Q8VZE5 OMA:ICGHVAH
PhylomeDB:Q8VZE5 ProtClustDB:CLSN2687691 ArrayExpress:Q8VZE5
Genevestigator:Q8VZE5 Uniprot:Q8VZE5
Length = 471
Score = 138 (53.6 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 67/300 (22%), Positives = 120/300 (40%)
Query: 90 KRCRNIA--CQTQ-LPADDCTCEICTHRNGFCNLCMCVICNKF-DFEVNTCRWIGCD--- 142
++CR++ C+ + LPA C+IC FC C C++C K E +I C+
Sbjct: 155 EKCRSLMPQCEAETLPA--MPCDICCGERKFCVDCCCILCCKLISLEHGGYSYIKCEAVV 212
Query: 143 ----LCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHC 198
+C H H +CA+R G S +E + CR C+ +L V + C
Sbjct: 213 SEGHICGHVAHMNCALR--AYLAGTIGGSMGLDTE--YYCRRCDAKKDLFPHVNKFLEIC 268
Query: 199 APAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLP-ESMACRGILLFF 257
+ + + L+ I RG++ ++L E + K+K G E + +
Sbjct: 269 QTVEYQGDVEKILNLGICILRGAQRDNAKELLNCIESTVIKLKCGTSLEDLWNDDTPTIW 328
Query: 258 QELEVDSPKSLENGEAGRL-----IAP----HEA-CNRIAEVVQEAIRKMEMVADEKMRM 307
+ DS ++ EN L I P HEA +++ E + E +R + + + ++
Sbjct: 329 SDYS-DSGEARENDTLQSLQDVTPIGPIPFNHEAEMHKLEEEIGEVLRALRKAQEFEYQI 387
Query: 308 FKKARLSLDACDREL-EDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADMFQLKANE 366
+ + C +L +E +EL + RL Q ++ +LK E
Sbjct: 388 AEGKLHAQKECLSDLYRQLEKEKSELSRRVSGTDANSLMTNVLKRLDQIRKEVTKLKEME 447
>TAIR|locus:2128946 [details] [associations]
symbol:VEL1 "vernalization5/VIN3-like 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA;IPI] [GO:0031519 "PcG protein complex"
evidence=IDA] [GO:0035064 "methylated histone residue binding"
evidence=IDA] [GO:0048587 "regulation of short-day photoperiodism,
flowering" evidence=IMP] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0007155 "cell adhesion" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010090
"trichome morphogenesis" evidence=RCA] [GO:0016926 "protein
desumoylation" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048765 "root hair cell differentiation"
evidence=RCA] [GO:0050665 "hydrogen peroxide biosynthetic process"
evidence=RCA] [GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR003961 Pfam:PF00041 PROSITE:PS50853 SMART:SM00060
GO:GO:0009506 Gene3D:2.60.40.10 InterPro:IPR013783 EMBL:CP002687
SUPFAM:SSF49265 EMBL:AL161576 GO:GO:0010228 GO:GO:0035064
GO:GO:0031519 InterPro:IPR004082 Pfam:PF07227 EMBL:AL109796
HOGENOM:HOG000238791 EMBL:EF064792 EMBL:AB050977 IPI:IPI00545759
PIR:T14080 RefSeq:NP_194749.1 UniGene:At.21785
ProteinModelPortal:Q9SUM4 SMR:Q9SUM4 DIP:DIP-48609N STRING:Q9SUM4
PRIDE:Q9SUM4 EnsemblPlants:AT4G30200.2 GeneID:829143
KEGG:ath:AT4G30200 TAIR:At4g30200 InParanoid:Q9SUM4 OMA:NHQSPAK
PhylomeDB:Q9SUM4 ProtClustDB:CLSN2685612 Genevestigator:Q9SUM4
GO:GO:0048587 Uniprot:Q9SUM4
Length = 714
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 48/177 (27%), Positives = 72/177 (40%)
Query: 92 CRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGC--------DL 143
C+N+AC+ L +D FC C C IC K+D + W+ C +
Sbjct: 146 CKNLACRAVLRQED----------SFCRRCSCCICRKYDDNKDPSLWLTCSSDPPFEGES 195
Query: 144 CSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLG-WVKDVFQHCAPAW 202
C H +CA + +G +S C F C +C + + LL W K + A
Sbjct: 196 CGFSCHLECAFNTEKSGLGKDKQSEGC----CFYCVSCGKANSLLECWKKQLT--IAKET 249
Query: 203 DR-EALMRELDFVSRIFRGSEDPRGR-KLYWKCEELLEKMKG---GLPESMACRGIL 254
R E L L V ++ + S R ++ + + LE G GLP M RGI+
Sbjct: 250 RRVEVLCYRLFLVQKLLKSSTKYRNLCEVVDEAVKTLEADVGPLTGLPMKMG-RGIV 305
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.412 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 432 420 0.00083 118 3 11 22 0.48 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 619 (66 KB)
Total size of DFA: 276 KB (2143 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.17u 0.13s 42.30t Elapsed: 00:00:02
Total cpu time: 42.17u 0.13s 42.30t Elapsed: 00:00:02
Start: Tue May 21 04:02:39 2013 End: Tue May 21 04:02:41 2013