BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014028
         (432 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
           Tular
 pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
           Tular
          Length = 427

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 188 LGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240
           +G  +++ ++ A A D++   R + F  R+++ + DPR   +   CEE+L K+
Sbjct: 283 IGSTENIDKYIAKAKDKDDPFRLMGFGHRVYKNT-DPRATAMKKNCEEILAKL 334


>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
           Nog
 pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
 pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
 pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
           And Nog
 pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
           H3k9me2 Peptide And Nog
 pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
           And Nog
 pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
           H3k27me2 Peptide And Nog
 pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
 pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
 pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
 pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
          Length = 528

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 134 NTCRWIGCDLCSHWTHTDCA 153
           N  +WIGCD C  W H  C+
Sbjct: 54  NDFQWIGCDSCQTWYHFLCS 73


>pdb|3LLV|A Chain A, The Crystal Structure Of The Nad(P)-Binding Domain Of An
           Exopolyphosphatase-Related Protein From Archaeoglobus
           Fulgidus To 1.7a
          Length = 141

 Score = 29.6 bits (65), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%)

Query: 358 DMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQES 417
           D F LK  +A R    +  I    + K +EE+  +   L +  A+A KQ   +KIK  E+
Sbjct: 81  DEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFXDKIKKXET 140


>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
 pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
           A H3k4me3 Peptide
          Length = 75

 Score = 28.1 bits (61), Expect = 9.0,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRAC 181
           +C  CNK D   +    IGCD C  W H  C                A P EM + C  C
Sbjct: 20  ICPGCNKPD---DGSPMIGCDDCDDWYHWPCV-----------GIMAAPPEEMQWFCPKC 65


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,499,879
Number of Sequences: 62578
Number of extensions: 444699
Number of successful extensions: 1151
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 8
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)