Query 014028
Match_columns 432
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 01:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07227 DUF1423: Protein of u 100.0 5E-161 1E-165 1219.0 31.8 417 1-422 12-431 (446)
2 smart00249 PHD PHD zinc finger 96.8 0.0014 2.9E-08 45.7 3.3 47 122-181 1-47 (47)
3 PF00628 PHD: PHD-finger; Int 92.7 0.055 1.2E-06 39.7 1.2 48 123-182 2-49 (51)
4 TIGR00570 cdk7 CDK-activating 83.3 46 0.00099 34.5 14.9 108 122-252 5-121 (309)
5 PRK08404 V-type ATP synthase s 75.1 24 0.00052 30.6 8.6 67 347-414 3-76 (103)
6 PF11793 FANCL_C: FANCL C-term 70.9 1.8 4E-05 34.8 0.8 60 122-185 4-65 (70)
7 PF06160 EzrA: Septation ring 69.8 93 0.002 34.1 13.5 185 229-418 141-335 (560)
8 PF11781 RRN7: RNA polymerase 69.5 2.1 4.6E-05 30.9 0.7 16 171-186 21-36 (36)
9 PRK04778 septation ring format 63.8 1.4E+02 0.0031 32.6 13.4 83 244-330 161-243 (569)
10 PLN03188 kinesin-12 family pro 60.7 64 0.0014 39.2 10.7 82 295-376 1111-1232(1320)
11 cd07649 F-BAR_GAS7 The F-BAR ( 58.8 1.9E+02 0.0041 28.4 12.7 42 379-420 160-203 (233)
12 KOG3654 Uncharacterized CH dom 58.7 48 0.001 36.9 8.6 82 325-416 384-466 (708)
13 PRK01194 V-type ATP synthase s 58.0 56 0.0012 30.8 8.1 32 363-394 21-52 (185)
14 cd00029 C1 Protein kinase C co 56.5 7.3 0.00016 27.9 1.6 32 123-155 14-45 (50)
15 smart00109 C1 Protein kinase C 54.6 8.9 0.00019 27.1 1.7 31 123-155 14-44 (49)
16 KOG0955 PHD finger protein BR1 52.6 11 0.00024 44.4 3.0 46 123-183 222-268 (1051)
17 PF07649 C1_3: C1-like domain; 52.5 10 0.00023 25.6 1.7 18 136-153 13-30 (30)
18 PF13639 zf-RING_2: Ring finge 52.2 7.7 0.00017 27.8 1.1 30 122-155 2-32 (44)
19 PF14634 zf-RING_5: zinc-RING 50.8 17 0.00036 26.4 2.7 31 123-157 2-33 (44)
20 KOG0163 Myosin class VI heavy 50.5 1.4E+02 0.003 35.2 10.8 17 338-354 915-931 (1259)
21 PF00170 bZIP_1: bZIP transcri 49.2 54 0.0012 25.5 5.5 45 333-377 18-62 (64)
22 KOG0994 Extracellular matrix g 48.9 3.6E+02 0.0078 33.4 13.9 39 354-392 1572-1610(1758)
23 PTZ00121 MAEBL; Provisional 47.6 1.6E+02 0.0034 37.0 11.0 22 362-383 1563-1584(2084)
24 PF00611 FCH: Fes/CIP4, and EF 46.6 37 0.00081 26.8 4.4 38 362-400 16-53 (91)
25 smart00055 FCH Fes/CIP4 homolo 44.7 47 0.001 26.5 4.7 34 364-398 18-51 (87)
26 KOG1973 Chromatin remodeling p 44.6 8.1 0.00018 38.5 0.3 37 136-185 230-269 (274)
27 COG2433 Uncharacterized conser 43.0 3.2E+02 0.007 31.2 12.0 32 341-372 436-467 (652)
28 KOG0976 Rho/Rac1-interacting s 42.3 5.9E+02 0.013 30.6 14.0 114 299-413 266-399 (1265)
29 TIGR03319 YmdA_YtgF conserved 41.1 1.8E+02 0.0038 31.9 9.7 73 304-376 95-170 (514)
30 cd07673 F-BAR_FCHO2 The F-BAR 40.8 3.8E+02 0.0083 26.7 13.4 25 368-396 156-180 (269)
31 PF12647 RNHCP: RNHCP domain; 40.8 13 0.00028 32.4 0.9 61 122-185 6-77 (92)
32 KOG1829 Uncharacterized conser 39.5 13 0.00027 41.4 0.8 44 107-158 503-551 (580)
33 KOG0957 PHD finger protein [Ge 38.8 17 0.00036 40.3 1.6 31 122-153 121-151 (707)
34 PRK12705 hypothetical protein; 38.7 1.8E+02 0.0039 32.1 9.3 38 339-376 125-164 (508)
35 PF07282 OrfB_Zn_ribbon: Putat 38.6 17 0.00037 28.3 1.3 29 123-151 31-59 (69)
36 PF13832 zf-HC5HC2H_2: PHD-zin 37.0 13 0.00027 31.4 0.3 59 122-186 2-66 (110)
37 PTZ00266 NIMA-related protein 36.9 3.3E+02 0.0071 32.7 11.5 24 198-221 223-246 (1021)
38 PF09538 FYDLN_acid: Protein o 36.2 18 0.00039 31.9 1.1 31 123-156 12-44 (108)
39 PRK00409 recombination and DNA 35.8 3.1E+02 0.0067 31.6 10.9 202 183-413 387-594 (782)
40 PF12861 zf-Apc11: Anaphase-pr 35.3 25 0.00055 30.2 1.8 16 143-158 51-66 (85)
41 PF00130 C1_1: Phorbol esters/ 34.8 22 0.00047 26.2 1.2 32 123-155 14-45 (53)
42 PHA02562 46 endonuclease subun 34.8 5.6E+02 0.012 27.2 12.0 19 312-330 284-302 (562)
43 PF01807 zf-CHC2: CHC2 zinc fi 34.4 35 0.00075 28.9 2.5 37 173-210 52-88 (97)
44 PHA02562 46 endonuclease subun 34.2 5.9E+02 0.013 27.0 12.0 36 342-377 338-373 (562)
45 cd07678 F-BAR_FCHSD1 The F-BAR 33.4 3.5E+02 0.0076 27.4 9.7 84 307-392 110-202 (263)
46 PRK00106 hypothetical protein; 33.1 2.8E+02 0.0061 30.8 9.7 37 340-376 153-191 (535)
47 smart00400 ZnF_CHCC zinc finge 33.1 35 0.00075 25.8 2.1 22 174-195 22-43 (55)
48 PRK14471 F0F1 ATP synthase sub 32.8 3.6E+02 0.0078 24.4 9.0 13 364-376 95-107 (164)
49 PRK00464 nrdR transcriptional 32.8 54 0.0012 30.6 3.7 87 172-259 25-118 (154)
50 PF13445 zf-RING_UBOX: RING-ty 32.1 23 0.0005 26.4 1.0 30 123-155 1-30 (43)
51 PF13901 DUF4206: Domain of un 31.1 27 0.00059 33.3 1.5 43 107-154 144-188 (202)
52 PF01196 Ribosomal_L17: Riboso 30.2 74 0.0016 27.6 3.9 52 362-419 20-71 (97)
53 PF07496 zf-CW: CW-type Zinc F 29.7 24 0.00052 26.7 0.7 15 137-151 2-16 (50)
54 COG4396 Mu-like prophage host- 29.7 64 0.0014 30.5 3.6 34 364-397 27-60 (170)
55 COG5141 PHD zinc finger-contai 29.3 26 0.00057 38.7 1.2 28 117-154 236-275 (669)
56 KOG0309 Conserved WD40 repeat- 29.2 27 0.00058 40.4 1.3 58 95-161 1007-1065(1081)
57 PF10272 Tmpp129: Putative tra 29.1 38 0.00082 35.7 2.3 107 30-140 219-338 (358)
58 TIGR03185 DNA_S_dndD DNA sulfu 28.7 8.5E+02 0.018 27.1 16.8 17 244-260 340-356 (650)
59 cd07607 BAR_SH3P_plant The Bin 28.5 2.1E+02 0.0045 28.4 6.9 77 286-367 84-160 (209)
60 PF11944 DUF3461: Protein of u 28.4 1E+02 0.0022 28.3 4.6 44 341-388 78-121 (125)
61 TIGR01069 mutS2 MutS2 family p 28.2 4.7E+02 0.01 30.1 10.8 22 210-231 404-425 (771)
62 KOG4323 Polycomb-like PHD Zn-f 28.2 46 0.001 36.3 2.8 57 123-188 171-228 (464)
63 PRK12704 phosphodiesterase; Pr 28.0 3.9E+02 0.0084 29.4 9.7 67 309-376 106-176 (520)
64 PF13832 zf-HC5HC2H_2: PHD-zin 27.9 67 0.0015 27.0 3.2 52 105-179 55-108 (110)
65 PTZ00121 MAEBL; Provisional 27.6 1.1E+03 0.023 30.4 13.6 13 186-198 945-957 (2084)
66 cd00162 RING RING-finger (Real 27.4 34 0.00074 22.8 1.1 30 123-157 2-31 (45)
67 PF12171 zf-C2H2_jaz: Zinc-fin 27.3 25 0.00055 22.9 0.4 10 175-184 1-10 (27)
68 PF04810 zf-Sec23_Sec24: Sec23 27.1 39 0.00084 24.5 1.4 33 115-148 2-34 (40)
69 TIGR01069 mutS2 MutS2 family p 26.5 9.3E+02 0.02 27.9 12.7 25 365-389 564-588 (771)
70 PRK15058 cytochrome b562; Prov 26.4 2.7E+02 0.0058 25.7 6.9 59 321-393 69-127 (128)
71 PF08580 KAR9: Yeast cortical 26.0 1E+03 0.023 27.3 15.4 43 311-353 128-174 (683)
72 PLN03184 chloroplast Hsp70; Pr 25.7 4E+02 0.0087 29.9 9.5 53 365-417 565-632 (673)
73 KOG0957 PHD finger protein [Ge 25.7 39 0.00085 37.5 1.7 44 109-163 164-219 (707)
74 TIGR02680 conserved hypothetic 25.6 1E+03 0.022 29.3 13.3 15 243-257 200-214 (1353)
75 PF11867 DUF3387: Domain of un 25.1 1.9E+02 0.0041 29.5 6.3 73 190-262 160-233 (335)
76 PF08112 ATP-synt_E_2: ATP syn 24.2 1.2E+02 0.0025 24.4 3.6 27 383-410 29-55 (56)
77 PF09755 DUF2046: Uncharacteri 24.0 5.2E+02 0.011 27.1 9.2 23 386-408 74-96 (310)
78 KOG3280 Mitochondrial/chloropl 22.9 2.4E+02 0.0051 27.3 6.1 56 354-412 38-93 (171)
79 PRK00420 hypothetical protein; 22.8 1.9E+02 0.0042 25.9 5.2 30 227-257 72-101 (112)
80 PF06548 Kinesin-related: Kine 22.6 1.1E+02 0.0023 33.7 4.2 30 347-376 431-462 (488)
81 PF09177 Syntaxin-6_N: Syntaxi 22.5 4.7E+02 0.01 21.9 7.5 74 285-366 5-78 (97)
82 PF09304 Cortex-I_coil: Cortex 22.1 5.9E+02 0.013 23.0 9.1 33 342-374 38-70 (107)
83 PF13719 zinc_ribbon_5: zinc-r 22.0 40 0.00086 24.1 0.6 25 123-147 5-34 (37)
84 KOG0980 Actin-binding protein 21.8 9.1E+02 0.02 29.1 11.3 95 295-393 337-437 (980)
85 KOG0250 DNA repair protein RAD 21.6 8E+02 0.017 29.9 11.0 12 30-41 443-454 (1074)
86 KOG0250 DNA repair protein RAD 21.1 1.2E+03 0.027 28.4 12.4 72 321-396 711-785 (1074)
87 TIGR01147 V_ATP_synt_G vacuola 21.0 2.8E+02 0.0061 24.9 5.8 51 348-413 29-85 (113)
88 PF10058 DUF2296: Predicted in 20.8 65 0.0014 25.2 1.7 15 171-185 40-54 (54)
89 PF11172 DUF2959: Protein of u 20.8 8.3E+02 0.018 24.2 10.6 66 284-359 77-142 (201)
90 PHA02277 hypothetical protein 20.7 2.6E+02 0.0056 26.2 5.7 117 223-354 28-146 (150)
91 KOG0825 PHD Zn-finger protein 20.6 40 0.00087 39.3 0.6 50 120-183 215-265 (1134)
92 KOG4443 Putative transcription 20.4 17 0.00037 41.0 -2.2 78 120-207 145-222 (694)
93 PF14768 RPA_interact_C: Repli 20.4 59 0.0013 26.9 1.4 29 111-148 52-80 (82)
No 1
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=100.00 E-value=5.3e-161 Score=1219.00 Aligned_cols=417 Identities=65% Similarity=1.063 Sum_probs=405.7
Q ss_pred CCCCcHHHHHHHHHHHHHHhhhcCCCcchhHHHHhHHhhccCCCcchhHHHhhhhhhhhhhhhhccCccccccCCCCCCc
Q 014028 1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQ 80 (432)
Q Consensus 1 m~~~p~e~le~lK~~lr~il~~~~~~~~~de~l~Lq~~lq~R~Dlt~~~l~~ahr~qLEilVaiktgi~aFl~p~~~~s~ 80 (432)
||+||+|+||+||++||+||+ +++|||||++||++||+|+|||+++|++|||+||||||||||||++||||++++|+
T Consensus 12 ~~~~~~e~l~~lk~~lr~i~~---~~~~r~e~~~lQ~~l~~RsDLt~~~L~~~hr~QLEilVAiktG~~~fl~~~~~~~~ 88 (446)
T PF07227_consen 12 MQEMPEESLEELKEYLREILE---GPEKREEFVALQKLLQRRSDLTSETLSKAHRVQLEILVAIKTGIQAFLHPSISISQ 88 (446)
T ss_pred HHHchHHHHHHHHHHHHHHHh---CcchHHHHHHHHHHHhccccCCHHHHhHhHHHHHHHHHHHhhCcHHHhCCCCCcCh
Confidence 789999999999999999995 59999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhhcccccccccccCCCCCCccccccCCCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcc
Q 014028 81 TSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQIC 160 (432)
Q Consensus 81 s~LveiFl~~~CrN~aCrs~Lp~~dc~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g 160 (432)
+.|||||+|+||||++|+|+||++||+|+|||+++|||++||||||+|||+|+|||+||+||+||||||+|||||+++||
T Consensus 89 ~~LveiFl~~rCrN~aC~s~LP~ddc~C~iC~~~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~ 168 (446)
T PF07227_consen 89 SELVEIFLYKRCRNLACRSQLPVDDCDCKICCSEPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIG 168 (446)
T ss_pred HHHHHHHHHHhcCCHHhhccCCccccCcchhcCCCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCeeEEcccCCCCchhhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCchhhHHHHHHHHHHHHH
Q 014028 161 MGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240 (432)
Q Consensus 161 ~g~~~~g~~~~lD~~f~C~~C~~~seLlg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~rgK~L~~~~e~al~KL 240 (432)
+|++.+|+.|++||+|||++|||+||||||||+||++|+++|++|+|++||+||+|||+||+|++||+|||++++|+.||
T Consensus 169 ~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~vf~~ca~~~~~d~L~~eL~l~~rIf~GSed~rgk~L~~~~e~al~KL 248 (446)
T PF07227_consen 169 TGPSVKGSIGTLDMQFHCRACGKTSELLGFVKKVFQTCAKAWRVDVLCKELDLVRRIFRGSEDYRGKELHEKVEEALAKL 248 (446)
T ss_pred CCccCCCCCccCceEEEccCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-ChhHHHHHHHHHhhhhccCCCcccccC-CCCcccChhhhh-hhhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhh
Q 014028 241 KGGL-PESMACRGILLFFQELEVDSPKSLENG-EAGRLIAPHEAC-NRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDA 317 (432)
Q Consensus 241 k~g~-~~~~~~~~il~ff~~~~~~~~k~~~~~-~~~~l~~~~~~~-~~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~ 317 (432)
++|+ +++++||+|++|||++ |++++.++. +++++|+|++++ |+||+++++|+++|+.|+.||++++++|++++++
T Consensus 249 ~~~~~~~~~a~~~il~ff~~~--d~~~~~~~~~~~~k~i~~q~a~~~~ia~~~~ea~~~~e~v~~e~~~~~kka~~~~~~ 326 (446)
T PF07227_consen 249 ENGVIDSSEACKAILQFFQEL--DSSKSFENSGESGKEIPPQEACPNRIAEVVQEAVRKMESVAEEKMRMLKKARLALET 326 (446)
T ss_pred hCCCCCHHHHHHHHHHHHhcc--cccccccccccccccccccccccCCCCCcchhhcccchhhhhcchhhhhhhhhhhhh
Confidence 9994 6779999999999997 445445454 678899999999 9999999999999999999999999999999999
Q ss_pred hhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhh
Q 014028 318 CDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLR 397 (432)
Q Consensus 318 ~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~ 397 (432)
++++|++|+++++|+++++++||++|||||||||||||||+|||.||||||||||||||||+||++|+|||||++|+|||
T Consensus 327 ~~~~l~~k~k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~ 406 (446)
T PF07227_consen 327 CDRELEDKAKEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLR 406 (446)
T ss_pred hhhHHHhhhhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHHHHhhcccCC
Q 014028 398 LSEAEAEKQYLFEKIKLQESSRASQ 422 (432)
Q Consensus 398 l~Eaee~r~~~~eelk~~e~s~~~~ 422 (432)
|+||||+||++|||||+|||||...
T Consensus 407 l~eaee~r~~~~eelk~~e~s~~~~ 431 (446)
T PF07227_consen 407 LNEAEEERKKKFEELKVLENSHRDY 431 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999654
No 2
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=92.67 E-value=0.055 Score=39.74 Aligned_cols=48 Identities=23% Similarity=0.614 Sum_probs=34.0
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
|.||.+ ..++-.||.||.|+.|-|+.|.--....-. ..+..|+|..|.
T Consensus 2 C~vC~~---~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~---------~~~~~w~C~~C~ 49 (51)
T PF00628_consen 2 CPVCGQ---SDDDGDMIQCDSCNRWYHQECVGPPEKAEE---------IPSGDWYCPNCR 49 (51)
T ss_dssp BTTTTS---SCTTSSEEEBSTTSCEEETTTSTSSHSHHS---------HHSSSBSSHHHH
T ss_pred CcCCCC---cCCCCCeEEcCCCChhhCcccCCCChhhcc---------CCCCcEECcCCc
Confidence 678888 457889999999999999999753333111 112278887764
No 4
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.28 E-value=46 Score=34.51 Aligned_cols=108 Identities=12% Similarity=0.188 Sum_probs=69.3
Q ss_pred ccccccccc-CCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCchhhhHHHHHHhhhcc
Q 014028 122 MCVICNKFD-FEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAP 200 (432)
Q Consensus 122 ~C~IC~kfD-~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~seLlg~vK~vf~~ca~ 200 (432)
+|++|..-. .|.+--..+. .|||.-=-.|.-+....|. ..|..|+++-.--.+..++|
T Consensus 5 ~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~--------------~~CP~C~~~lrk~~fr~q~F----- 63 (309)
T TIGR00570 5 GCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGS--------------GSCPECDTPLRKNNFRVQLF----- 63 (309)
T ss_pred CCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCC--------------CCCCCCCCccchhhcccccc-----
Confidence 688888732 2334344565 7999888899887643222 27999998877766666555
Q ss_pred cccHHHHHHHHhhhhhhc---ccCCC-ch----hhHHHHHHHHHHHHHhCCCChhHHHHH
Q 014028 201 AWDREALMRELDFVSRIF---RGSED-PR----GRKLYWKCEELLEKMKGGLPESMACRG 252 (432)
Q Consensus 201 ~w~~d~L~keL~lv~rIf---rGSed-~r----gK~L~~~~e~al~KLk~g~~~~~~~~~ 252 (432)
.-..+.+++++=+|++ .-+++ +. .-.-++.+|+++=.|-+|+|....=..
T Consensus 64 --~D~~vekEV~iRkrv~~i~Nk~e~dF~~l~~yNdYLE~vEdii~nL~~~~d~~~te~~ 121 (309)
T TIGR00570 64 --EDPTVEKEVDIRKRVLKIYNKREEDFPSLREYNDYLEEVEDIVYNLTNNIDLENTKKK 121 (309)
T ss_pred --ccHHHHHHHHHHHHHHHHHccchhccCCHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 3366778888766554 33332 11 124566788888888888887653333
No 5
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=75.08 E-value=24 Score=30.56 Aligned_cols=67 Identities=27% Similarity=0.342 Sum_probs=43.6
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHH-------HhhhhhhhhcHHHHHHHHHHHHHHH
Q 014028 347 EKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEY-------ASSYLKLRLSEAEAEKQYLFEKIKL 414 (432)
Q Consensus 347 EsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeY-------as~~~kl~l~Eaee~r~~~~eelk~ 414 (432)
|.|-+||+||++ |+....+|+.||..+-.=+....+++.++- +.+++.-=-.+++.+|+..+.+++.
T Consensus 3 e~i~~ik~aE~~-~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~ 76 (103)
T PRK08404 3 DVIKEIVKAEKE-AEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEK 76 (103)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999987 677788888888877655555444443321 2344444455667777777777664
No 6
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=70.88 E-value=1.8 Score=34.82 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=23.0
Q ss_pred cccccccccCCCCceeEEecC--CCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 122 MCVICNKFDFEVNTCRWIGCD--LCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd--~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
.|.||+.+-...+.-..+.|+ .|++..|+.|-..-...-.+. .. ...-+.=.|..|..+-
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~--~~--~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKS--RQ--SFIPIFGECPYCSSPI 65 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSS--S---TTT--EEE-TTT-SEE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccC--Ce--eecccccCCcCCCCee
Confidence 488999874455666689997 999999999977654432210 11 1112233599998753
No 7
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.79 E-value=93 Score=34.09 Aligned_cols=185 Identities=22% Similarity=0.200 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHh-CCCChhHHHHHHHHHhhhhccCCCcccccCCCCcccChhhhhhhhhHhHHHHHHHhhhhhhHHhhh
Q 014028 229 LYWKCEELLEKMK-GGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRM 307 (432)
Q Consensus 229 L~~~~e~al~KLk-~g~~~~~~~~~il~ff~~~~~~~~k~~~~~~~~~l~~~~~~~~~ia~~~~ea~~~~e~v~~ek~~~ 307 (432)
|.+.-+++-..|- ...+...++..|-..+.+++.+.++..+-+.+|.-+..++....+...+..--..|+.||. +
T Consensus 141 l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~----l 216 (560)
T PF06160_consen 141 LKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPK----L 216 (560)
T ss_pred HHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH----H
Confidence 3444444444443 3356666777777777777766665555555666666666666666666665566666654 5
Q ss_pred hhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHH-HHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchH
Q 014028 308 FKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKI-VRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSE 386 (432)
Q Consensus 308 ~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsi-VrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~E 386 (432)
++.....+|..-.+|.+--+++.+=.|- ....+--++++.| -.|+++.+.+=++..++|+...+.+..=+-.=.+.+|
T Consensus 217 ~~~l~~~~P~ql~eL~~gy~~m~~~gy~-l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le 295 (560)
T PF06160_consen 217 YKELQKEFPDQLEELKEGYREMEEEGYY-LEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILE 295 (560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666555555544433321111 0000011111111 1234444445455555555555555544444455555
Q ss_pred HHHHhhh--------hhhhhcHHHHHHHHHHHHHHHHhhc
Q 014028 387 EEYASSY--------LKLRLSEAEAEKQYLFEKIKLQESS 418 (432)
Q Consensus 387 eeYas~~--------~kl~l~Eaee~r~~~~eelk~~e~s 418 (432)
.|+.++- +.-.|+.+.+.=+.+..|+.-+..|
T Consensus 296 ~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~s 335 (560)
T PF06160_consen 296 KEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQS 335 (560)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544331 2223444444445555555444433
No 8
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=69.45 E-value=2.1 Score=30.89 Aligned_cols=16 Identities=25% Similarity=0.715 Sum_probs=14.0
Q ss_pred CCCeeEEcccCCCCch
Q 014028 171 PSEMLFRCRACNRTSE 186 (432)
Q Consensus 171 ~lD~~f~C~~C~~~se 186 (432)
..||.|||..||++++
T Consensus 21 ~~dG~~yC~~cG~~~E 36 (36)
T PF11781_consen 21 SDDGFYYCDRCGHQSE 36 (36)
T ss_pred ccCCEEEhhhCceEcC
Confidence 5799999999999864
No 9
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.77 E-value=1.4e+02 Score=32.63 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHhhhhccCCCcccccCCCCcccChhhhhhhhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhhhhhhhh
Q 014028 244 LPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELE 323 (432)
Q Consensus 244 ~~~~~~~~~il~ff~~~~~~~~k~~~~~~~~~l~~~~~~~~~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~~~~~l~ 323 (432)
-+...++..|=.-+.+++.+.+...+-+.+|.-+...+.+..+...+..--..|+.||. +++.....+|..-.+|.
T Consensus 161 ~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~----l~~~~~~~~P~ql~el~ 236 (569)
T PRK04778 161 FSFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPE----LLKELQTELPDQLQELK 236 (569)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHH
Confidence 34444555555555555554444444455566566666666666665555556666653 55666666655555555
Q ss_pred hhHhHHH
Q 014028 324 DKAREVT 330 (432)
Q Consensus 324 ~k~~~~~ 330 (432)
+--+++.
T Consensus 237 ~gy~~m~ 243 (569)
T PRK04778 237 AGYRELV 243 (569)
T ss_pred HHHHHHH
Confidence 4444443
No 10
>PLN03188 kinesin-12 family protein; Provisional
Probab=60.75 E-value=64 Score=39.18 Aligned_cols=82 Identities=30% Similarity=0.451 Sum_probs=53.5
Q ss_pred HHhhhhh--hHH-hhhhhhhhhhhhhhhhhhh----------------hhHhHHHHHHHHHhhccchh------------
Q 014028 295 RKMEMVA--DEK-MRMFKKARLSLDACDRELE----------------DKAREVTELQMERTKKKQQI------------ 343 (432)
Q Consensus 295 ~~~e~v~--~ek-~~~~k~a~~~l~~~~~~l~----------------~k~~~~~el~~~~~~kk~~~------------ 343 (432)
|-+|-|| .|| +.++.+.|...+-.+.... .=|.+++-|+.+|-|....+
T Consensus 1111 r~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1111 RMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 6677777 667 5557888888877663322 12345555555543322111
Q ss_pred HHH-------HHHHHhhHHHH--HHHhhhhHHHHHHHHHHHH
Q 014028 344 EEL-------EKIVRLKQAEA--DMFQLKANEAKREAERLQR 376 (432)
Q Consensus 344 eeL-------EsiVrlKqAEA--~MfQ~kAdeArrEAE~l~r 376 (432)
|-- |=+||||+||- -.=|.||.+|..|++.+.+
T Consensus 1191 dtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188 1191 DTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 44899999983 4568999999999999876
No 11
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.78 E-value=1.9e+02 Score=28.43 Aligned_cols=42 Identities=12% Similarity=-0.031 Sum_probs=26.8
Q ss_pred HhhhhchHHHHHhhhhhhh--hcHHHHHHHHHHHHHHHHhhccc
Q 014028 379 LAKTDKSEEEYASSYLKLR--LSEAEAEKQYLFEKIKLQESSRA 420 (432)
Q Consensus 379 ~aK~ek~EeeYas~~~kl~--l~Eaee~r~~~~eelk~~e~s~~ 420 (432)
..|.+|.+++|....-++. ...-+++=...|+.+|.+|..|.
T Consensus 160 ~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl 203 (233)
T cd07649 160 RRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERI 203 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777788876544322 23445556677888888887774
No 12
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=58.74 E-value=48 Score=36.94 Aligned_cols=82 Identities=32% Similarity=0.278 Sum_probs=52.3
Q ss_pred hHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhhhcHHHHH
Q 014028 325 KAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAE 404 (432)
Q Consensus 325 k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~l~Eaee~ 404 (432)
|+..-.-.+..+.-.|+|--+=|.=+|-.|-||+|=|.| +||||-||.= -.+.|||-+.+ .+--+|-+-+
T Consensus 384 kaedema~kraallekqqrraeear~rkqqleae~e~kr-eearrkaeee-------r~~keee~arr--efirqey~rr 453 (708)
T KOG3654|consen 384 KAEDEMAQKRAALLEKQQRRAEEARRRKQQLEAEKEQKR-EEARRKAEEE-------RAPKEEEVARR--EFIRQEYERR 453 (708)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHhh-------hcchhhhhhHH--HHHHHHHHHH
Confidence 444433444444555666667788899999999997755 7888877654 34567777766 3333455444
Q ss_pred HH-HHHHHHHHHh
Q 014028 405 KQ-YLFEKIKLQE 416 (432)
Q Consensus 405 r~-~~~eelk~~e 416 (432)
+| +++|++-|+.
T Consensus 454 kqlklmed~dv~k 466 (708)
T KOG3654|consen 454 KQLKLMEDLDVLK 466 (708)
T ss_pred HHHHHHHhhcccC
Confidence 43 4567777654
No 13
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=58.04 E-value=56 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhchHHHHHhhhh
Q 014028 363 KANEAKREAERLQRIALAKTDKSEEEYASSYL 394 (432)
Q Consensus 363 kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~ 394 (432)
--++|+++|+.+..-+.++.+++-++|..+.-
T Consensus 21 I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~ 52 (185)
T PRK01194 21 INDEYSKRIEKLEKECDSKIQSIKEYYEKKMR 52 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777666666666666666655443
No 14
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=56.49 E-value=7.3 Score=27.87 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=23.5
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
|.+|.++-... +--++.|+.|+..+|-.|+-+
T Consensus 14 C~~C~~~i~~~-~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 14 CDVCRKSIWGL-FKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred hhhcchhhhcc-ccceeEcCCCCCchhhhhhcc
Confidence 46666653322 457788999999999999854
No 15
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=54.57 E-value=8.9 Score=27.05 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=22.4
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
|.+|.++-.... -++.|..|+..+|-.|+-+
T Consensus 14 C~~C~~~i~~~~--~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 14 CCVCRKSIWGSF--QGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred ccccccccCcCC--CCcCCCCCCchHHHHHHhh
Confidence 456666432222 4789999999999999865
No 16
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=52.64 E-value=11 Score=44.43 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=32.0
Q ss_pred cccccccc-CCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 123 CVICNKFD-FEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 123 C~IC~kfD-~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
|+||.+-| +|.|. -+.||.|....|.+|-= + .--.|++.-|++|.-
T Consensus 222 C~iC~~~~~~n~n~--ivfCD~Cnl~VHq~Cyg------i-------~~ipeg~WlCr~Cl~ 268 (1051)
T KOG0955|consen 222 CCICLDGECQNSNV--IVFCDGCNLAVHQECYG------I-------PFIPEGQWLCRRCLQ 268 (1051)
T ss_pred ceeecccccCCCce--EEEcCCCcchhhhhccC------C-------CCCCCCcEeehhhcc
Confidence 37888763 34444 57899999999999942 2 124577888888753
No 17
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=52.53 E-value=10 Score=25.61 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=8.7
Q ss_pred eeEEecCCCcchhhhHhh
Q 014028 136 CRWIGCDLCSHWTHTDCA 153 (432)
Q Consensus 136 ~~Wi~Cd~Cgh~cHldCA 153 (432)
..+-.|..|...-|++||
T Consensus 13 ~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 13 GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --EEE-TTT-----HHHH
T ss_pred CceEECccCCCccChhcC
Confidence 467789999999999997
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=52.23 E-value=7.7 Score=27.76 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=21.0
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
.|.||.. |+. +-.++... |||.-|.+|..+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~ 32 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKE 32 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHH
Confidence 4789988 544 33344444 899999999664
No 19
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=50.80 E-value=17 Score=26.38 Aligned_cols=31 Identities=19% Similarity=0.439 Sum_probs=23.1
Q ss_pred cccccc-ccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 123 CVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 123 C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
|.+|.+ | +.+.-.|+. .|||+-.-.|+.+..
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~ 33 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK 33 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc
Confidence 678887 5 333336776 899999999998665
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=50.47 E-value=1.4e+02 Score=35.16 Aligned_cols=17 Identities=47% Similarity=0.829 Sum_probs=10.7
Q ss_pred hccchhHHHHHHHHhhH
Q 014028 338 KKKQQIEELEKIVRLKQ 354 (432)
Q Consensus 338 ~kk~~~eeLEsiVrlKq 354 (432)
+++++++|||..-++.+
T Consensus 915 k~~q~~~e~er~rk~qE 931 (1259)
T KOG0163|consen 915 KEQQQIEELERLRKIQE 931 (1259)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35566677777666654
No 21
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.25 E-value=54 Score=25.50 Aligned_cols=45 Identities=31% Similarity=0.401 Sum_probs=39.2
Q ss_pred HHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 014028 333 QMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRI 377 (432)
Q Consensus 333 ~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri 377 (432)
.-.|.+|+..+++||.=|.--++|-.......+..+.+...|+.-
T Consensus 18 r~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 18 RRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999888888888888754
No 22
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=48.88 E-value=3.6e+02 Score=33.43 Aligned_cols=39 Identities=36% Similarity=0.316 Sum_probs=32.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhh
Q 014028 354 QAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASS 392 (432)
Q Consensus 354 qAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~ 392 (432)
-+||+-=|..|.+|-++|.+-.+.+.--.+|++|+-+.-
T Consensus 1572 L~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~a 1610 (1758)
T KOG0994|consen 1572 LEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAA 1610 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357888899999999999999999988888988876543
No 23
>PTZ00121 MAEBL; Provisional
Probab=47.59 E-value=1.6e+02 Score=37.01 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhh
Q 014028 362 LKANEAKREAERLQRIALAKTD 383 (432)
Q Consensus 362 ~kAdeArrEAE~l~ri~~aK~e 383 (432)
.++-+++|.||--++||++|.+
T Consensus 1563 ~kk~eekr~aeE~k~~a~rkae 1584 (2084)
T PTZ00121 1563 KKKAEEAKKAEEDKNMALRKAE 1584 (2084)
T ss_pred HHHHHHHHHHhhhhhhhhhhHH
Confidence 3455556666666666666643
No 24
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=46.60 E-value=37 Score=26.82 Aligned_cols=38 Identities=26% Similarity=0.215 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhhhcH
Q 014028 362 LKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSE 400 (432)
Q Consensus 362 ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~l~E 400 (432)
.+.+......+.|..+.. |-.++|++|+.++.||.-.-
T Consensus 16 ~~~~~~~~~~~~l~~~~k-eRa~lE~~Yak~L~kl~~~~ 53 (91)
T PF00611_consen 16 KRLKQGIKLLEELASFFK-ERASLEEEYAKSLQKLAKKF 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344555555566655543 34478888888888876443
No 25
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=44.72 E-value=47 Score=26.49 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhhh
Q 014028 364 ANEAKREAERLQRIALAKTDKSEEEYASSYLKLRL 398 (432)
Q Consensus 364 AdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~l 398 (432)
.+...+..+.+.....-+ .++|+||+.++.||.-
T Consensus 18 ~~~~~~~~~~~~~f~~~R-a~iE~eYak~L~kL~~ 51 (87)
T smart00055 18 LKNGLRLLEDLKKFIRER-AKIEEEYAKKLQKLSK 51 (87)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 334445555555555444 6799999999999843
No 26
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=44.57 E-value=8.1 Score=38.54 Aligned_cols=37 Identities=27% Similarity=0.767 Sum_probs=26.5
Q ss_pred eeEEecCC--Cc-chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 136 CRWIGCDL--CS-HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 136 ~~Wi~Cd~--Cg-h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
.--|+||- |. -|-|+.| +|+- ...-|..||..|-...
T Consensus 230 g~Mi~CDn~~C~~eWFH~~C------VGL~-------~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTC------VGLK-------TKPKGKWYCPRCKAEN 269 (274)
T ss_pred ccccccCCCCCCcceEEEec------cccc-------cCCCCcccchhhhhhh
Confidence 34689995 99 9999999 3441 1234459999997654
No 27
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.01 E-value=3.2e+02 Score=31.22 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.0
Q ss_pred chhHHHHHHHHhhHHHHHHHhhhhHHHHHHHH
Q 014028 341 QQIEELEKIVRLKQAEADMFQLKANEAKREAE 372 (432)
Q Consensus 341 ~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE 372 (432)
.++.+|++++.=.++|-.|.-.+-+++++|++
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888999999999999998887
No 28
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.31 E-value=5.9e+02 Score=30.55 Aligned_cols=114 Identities=25% Similarity=0.286 Sum_probs=68.4
Q ss_pred hhhhHHhhhhhhhhhhhhhhhh----hhhhhHhHHHHHHHHHhhccchhHHHHHHHH-----hhHHHHHHHhhhhHHHHH
Q 014028 299 MVADEKMRMFKKARLSLDACDR----ELEDKAREVTELQMERTKKKQQIEELEKIVR-----LKQAEADMFQLKANEAKR 369 (432)
Q Consensus 299 ~v~~ek~~~~k~a~~~l~~~~~----~l~~k~~~~~el~~~~~~kk~~~eeLEsiVr-----lKqAEA~MfQ~kAdeArr 369 (432)
.+-+|||+.++.-++.|..-.. -...+.+++.+++-.+.+..+.+++--..|. ++.--|+. |--.-||||
T Consensus 266 k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadi-rc~LlEarr 344 (1265)
T KOG0976|consen 266 KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADI-RCALLEARR 344 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3447899988777776653222 2334666777777777777777766544443 23323332 333457777
Q ss_pred HHHHHH----------HHHHhhhhchHHH-HHhhhhhhhhcHHHHHHHHHHHHHH
Q 014028 370 EAERLQ----------RIALAKTDKSEEE-YASSYLKLRLSEAEAEKQYLFEKIK 413 (432)
Q Consensus 370 EAE~l~----------ri~~aK~ek~Eee-Yas~~~kl~l~Eaee~r~~~~eelk 413 (432)
-||||- -++++-..++-|- -+....+.+|.+..++|+.-++++|
T Consensus 345 k~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK 399 (1265)
T KOG0976|consen 345 KAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK 399 (1265)
T ss_pred hhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777763 3343333333221 1234567889999999999888876
No 29
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=41.08 E-value=1.8e+02 Score=31.91 Aligned_cols=73 Identities=33% Similarity=0.455 Sum_probs=47.0
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhh-ccchhHHHHHHHHhhHHHHH--HHhhhhHHHHHHHHHHHH
Q 014028 304 KMRMFKKARLSLDACDRELEDKAREVTELQMERTK-KKQQIEELEKIVRLKQAEAD--MFQLKANEAKREAERLQR 376 (432)
Q Consensus 304 k~~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~-kk~~~eeLEsiVrlKqAEA~--MfQ~kAdeArrEAE~l~r 376 (432)
|...+.+....|+.-..+|+.+..++.+++-+... ...+..+||.|--|-+.||+ ++..--++++.|+-.+=|
T Consensus 95 r~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~ 170 (514)
T TIGR03319 95 KMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIK 170 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555566666666655544332 23566899999998877776 777888888888876543
No 30
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=40.84 E-value=3.8e+02 Score=26.71 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHhhhhhh
Q 014028 368 KREAERLQRIALAKTDKSEEEYASSYLKL 396 (432)
Q Consensus 368 rrEAE~l~ri~~aK~ek~EeeYas~~~kl 396 (432)
+.+.|.. .+|..|.+++|.+.+-++
T Consensus 156 ~k~leK~----~~k~~ka~~~Y~~~v~~l 180 (269)
T cd07673 156 QREIEKA----AVKSKKATESYKLYVEKY 180 (269)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4555554 577888899998888777
No 31
>PF12647 RNHCP: RNHCP domain; InterPro: IPR024439 This domain is found in uncharacterised bacterial proteins. It is typically between 94 and 143 amino acids in length and has a conserved RNHCP sequence motif.
Probab=40.79 E-value=13 Score=32.36 Aligned_cols=61 Identities=21% Similarity=0.399 Sum_probs=42.9
Q ss_pred cccccccc--cCCCCceeEEecCCCcchhhhH---------hhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 122 MCVICNKF--DFEVNTCRWIGCDLCSHWTHTD---------CAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 122 ~C~IC~kf--D~~~d~~~Wi~Cd~Cgh~cHld---------CALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
.|..|... ....++--+--|..|.++-|+| |.=+-.-|++-. ...+.--...+|.+||+.+
T Consensus 6 ~C~~CG~~V~p~~~g~~~RNHCP~CL~S~Hvd~~pGDRas~C~g~M~Pi~v~~---~~~g~w~iiHrC~~Cg~l~ 77 (92)
T PF12647_consen 6 TCVHCGLTVSPLAAGSAHRNHCPSCLSSLHVDIVPGDRASDCGGRMEPIAVWV---RRDGEWMIIHRCTRCGELR 77 (92)
T ss_pred CccccCCCcccCCCCCCccCcCcccccccccCCCCCCccccCCCeeeEEEEEE---EcCCCEEEEEecCCCCCcc
Confidence 47788883 5556777899999999999999 544444455422 2224566778999999865
No 32
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=39.50 E-value=13 Score=41.42 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=32.2
Q ss_pred ccccccCCCCcccCccccccccccCCCCceeE-----EecCCCcchhhhHhhhhcCC
Q 014028 107 TCEICTHRNGFCNLCMCVICNKFDFEVNTCRW-----IGCDLCSHWTHTDCAIRDGQ 158 (432)
Q Consensus 107 ~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~W-----i~Cd~Cgh~cHldCALr~~~ 158 (432)
.|+.|..+--+|..| +.+.-.|-| ..|+.|+++.|-.|-=+.+.
T Consensus 503 ~C~lC~~~gfiCe~C--------q~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s~ 551 (580)
T KOG1829|consen 503 ECDLCTGKGFICELC--------QHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKSP 551 (580)
T ss_pred hchhhccCeeeeeec--------cCCCcccccccccceeHHHHHHHHHHHHHhccCC
Confidence 488888876666554 445555666 89999999999999765544
No 33
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=38.82 E-value=17 Score=40.28 Aligned_cols=31 Identities=26% Similarity=0.666 Sum_probs=24.8
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhh
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCA 153 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCA 153 (432)
+||+|-.-- ..|---.|.||.||-.-|=.|-
T Consensus 121 iCcVClg~r-s~da~ei~qCd~CGi~VHEgCY 151 (707)
T KOG0957|consen 121 ICCVCLGQR-SVDAGEILQCDKCGINVHEGCY 151 (707)
T ss_pred EEEEeecCc-cccccceeeccccCceeccccc
Confidence 889998742 3445568999999999999994
No 34
>PRK12705 hypothetical protein; Provisional
Probab=38.68 E-value=1.8e+02 Score=32.11 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.4
Q ss_pred ccchhHHHHHHHHhhHHHHH--HHhhhhHHHHHHHHHHHH
Q 014028 339 KKQQIEELEKIVRLKQAEAD--MFQLKANEAKREAERLQR 376 (432)
Q Consensus 339 kk~~~eeLEsiVrlKqAEA~--MfQ~kAdeArrEAE~l~r 376 (432)
...+..+||.|--+-+.||+ ++..--+++++|+-.+=+
T Consensus 125 ~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~ 164 (508)
T PRK12705 125 EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVK 164 (508)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999888877 888888899998876543
No 35
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=38.59 E-value=17 Score=28.27 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=16.8
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhH
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTD 151 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHld 151 (432)
|..|+........-.+..|..||+..|-|
T Consensus 31 C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 31 CPRCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred ccCcccccccccccceEEcCCCCCEECcH
Confidence 45555544334455666677777666654
No 36
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=37.03 E-value=13 Score=31.42 Aligned_cols=59 Identities=22% Similarity=0.503 Sum_probs=34.8
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCC------CCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSA------KSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~------~g~~~~lD~~f~C~~C~~~se 186 (432)
.|++|.+.+.+.-+ ..-+.|+|+-||+-...+-..... ............|.-|++...
T Consensus 2 ~C~lC~~~~Galk~------t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~~G 66 (110)
T PF13832_consen 2 SCVLCPKRGGALKR------TSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKSGG 66 (110)
T ss_pred ccEeCCCCCCcccC------ccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCCCc
Confidence 47788876433322 235789999999976654332111 111122245788999998744
No 37
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=36.91 E-value=3.3e+02 Score=32.73 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=13.9
Q ss_pred hcccccHHHHHHHHhhhhhhcccC
Q 014028 198 CAPAWDREALMRELDFVSRIFRGS 221 (432)
Q Consensus 198 ca~~w~~d~L~keL~lv~rIfrGS 221 (432)
....|+..++..+|-.+.-.|.+.
T Consensus 223 KSDVWSLG~ILYELLTGk~PF~~~ 246 (1021)
T PTZ00266 223 KSDMWALGCIIYELCSGKTPFHKA 246 (1021)
T ss_pred hhHHHHHHHHHHHHHHCCCCCCcC
Confidence 345666666666665555555443
No 38
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=36.16 E-value=18 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=24.5
Q ss_pred cccccc--ccCCCCceeEEecCCCcchhhhHhhhhc
Q 014028 123 CVICNK--FDFEVNTCRWIGCDLCSHWTHTDCAIRD 156 (432)
Q Consensus 123 C~IC~k--fD~~~d~~~Wi~Cd~Cgh~cHldCALr~ 156 (432)
|.-|++ ||.|++| |.|..||..-.++=.++.
T Consensus 12 Cp~CG~kFYDLnk~P---ivCP~CG~~~~~~~~~k~ 44 (108)
T PF09538_consen 12 CPSCGAKFYDLNKDP---IVCPKCGTEFPPEPPLKS 44 (108)
T ss_pred CCCCcchhccCCCCC---ccCCCCCCccCccccccc
Confidence 567777 5999999 889999999998833333
No 39
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.80 E-value=3.1e+02 Score=31.58 Aligned_cols=202 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCchhhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCchhhHHHHHHHHHHHHHhCCCChhHHHHHHHHHhhhhcc
Q 014028 183 RTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEV 262 (432)
Q Consensus 183 ~~seLlg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~rgK~L~~~~e~al~KLk~g~~~~~~~~~il~ff~~~~~ 262 (432)
..|.+.++.+++..+.... -.+.|-+.--+++|+.-..|..|...+-+.+.+...-+-...=...+..++.....
T Consensus 387 ~lStfS~~m~~~~~Il~~~-----~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~ 461 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-----DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG 461 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-----CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC
Q ss_pred CCCcccccCCCCcccChhhhhhhhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccch
Q 014028 263 DSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQ 342 (432)
Q Consensus 263 ~~~k~~~~~~~~~l~~~~~~~~~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~ 342 (432)
-..-...- +...+.+.-....++++.+. |+...+.+..++ .++.+|+..+.. ....
T Consensus 462 v~~~~~~~-d~~~l~~~Ykl~~G~~g~S~-a~~iA~~~Glp~-~ii~~A~~~~~~---------------------~~~~ 517 (782)
T PRK00409 462 VENASVEF-DEETLRPTYRLLIGIPGKSN-AFEIAKRLGLPE-NIIEEAKKLIGE---------------------DKEK 517 (782)
T ss_pred eEEEEEEE-ecCcCcEEEEEeeCCCCCcH-HHHHHHHhCcCH-HHHHHHHHHHhh---------------------hhhH
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhh------hcHHHHHHHHHHHHHH
Q 014028 343 IEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLR------LSEAEAEKQYLFEKIK 413 (432)
Q Consensus 343 ~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~------l~Eaee~r~~~~eelk 413 (432)
+++|=.=+-=+..+.+--...+...++|++.+++=...+.++++++....+.+++ +.+|.++=+.++.+++
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk 594 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 40
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=35.28 E-value=25 Score=30.16 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=13.5
Q ss_pred CCcchhhhHhhhhcCC
Q 014028 143 LCSHWTHTDCAIRDGQ 158 (432)
Q Consensus 143 ~Cgh~cHldCALr~~~ 158 (432)
.|+|.-|+.|-++=-.
T Consensus 51 ~C~H~FH~hCI~kWl~ 66 (85)
T PF12861_consen 51 KCSHNFHMHCILKWLS 66 (85)
T ss_pred cCccHHHHHHHHHHHc
Confidence 5999999999987544
No 41
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=34.83 E-value=22 Score=26.24 Aligned_cols=32 Identities=25% Similarity=0.602 Sum_probs=22.4
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
|.+|.++=.. ....-+.|..|+..+|-.|.-+
T Consensus 14 C~~C~~~i~g-~~~~g~~C~~C~~~~H~~C~~~ 45 (53)
T PF00130_consen 14 CDVCGKFIWG-LGKQGYRCSWCGLVCHKKCLSK 45 (53)
T ss_dssp -TTSSSBECS-SSSCEEEETTTT-EEETTGGCT
T ss_pred CcccCcccCC-CCCCeEEECCCCChHhhhhhhh
Confidence 4666675433 5566789999999999999854
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.75 E-value=5.6e+02 Score=27.17 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=9.1
Q ss_pred hhhhhhhhhhhhhhHhHHH
Q 014028 312 RLSLDACDRELEDKAREVT 330 (432)
Q Consensus 312 ~~~l~~~~~~l~~k~~~~~ 330 (432)
....+.|.+.+.+-...++
T Consensus 284 ~~~Cp~C~~~~~~~~~~~~ 302 (562)
T PHA02562 284 GGVCPTCTQQISEGPDRIT 302 (562)
T ss_pred CCCCCCCCCcCCCcHHHHH
Confidence 3355566655544333333
No 43
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=34.43 E-value=35 Score=28.89 Aligned_cols=37 Identities=19% Similarity=0.389 Sum_probs=22.0
Q ss_pred CeeEEcccCCCCchhhhHHHHHHhhhcccccHHHHHHH
Q 014028 173 EMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRE 210 (432)
Q Consensus 173 D~~f~C~~C~~~seLlg~vK~vf~~ca~~w~~d~L~ke 210 (432)
...|+|-+||+.-|.+.||.++- .+--...++.|..+
T Consensus 52 k~~~~Cf~Cg~~Gd~i~~v~~~~-~~~f~eAv~~l~~~ 88 (97)
T PF01807_consen 52 KNRFKCFGCGKGGDVIDFVMKYE-GCSFKEAVKWLAEE 88 (97)
T ss_dssp TTEEEETTT--EE-HHHHHHHHH-T--HHHHHHHHHHH
T ss_pred CCeEEECCCCCCCcHHhHHHHHh-CCCHHHHHHHHHHH
Confidence 35899999999999999998875 33333333444433
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.16 E-value=5.9e+02 Score=27.02 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=15.5
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH
Q 014028 342 QIEELEKIVRLKQAEADMFQLKANEAKREAERLQRI 377 (432)
Q Consensus 342 ~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri 377 (432)
.++++++.++-+.....=-..+.+..+.|.+.|+..
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444443333333333444444455555443
No 45
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.41 E-value=3.5e+02 Score=27.44 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=46.1
Q ss_pred hhhhhhhhhhhhh-------hhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHH--
Q 014028 307 MFKKARLSLDACD-------RELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRI-- 377 (432)
Q Consensus 307 ~~k~a~~~l~~~~-------~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri-- 377 (432)
.+|+......... .+|+--.+.......++..-+..+.|.|+ |.|.++..+|+.|++-=+.++...++.
T Consensus 110 ~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~--k~~K~~~~~~~sk~~~eK~~~K~~~~~~~ 187 (263)
T cd07678 110 VLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEA--RLNKSDHGIFHSKASLQKLSAKFSAQSAE 187 (263)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhhhccccHHHHHHHHHHHHHHHHH
Confidence 4555554433333 33333333333444444545566777777 888999999999987655443321111
Q ss_pred HHhhhhchHHHHHhh
Q 014028 378 ALAKTDKSEEEYASS 392 (432)
Q Consensus 378 ~~aK~ek~EeeYas~ 392 (432)
-..|..++-.||+-.
T Consensus 188 ~~~k~~~arNeYll~ 202 (263)
T cd07678 188 YSQQLQAARNEYLLN 202 (263)
T ss_pred HHHHHHHHHHHHHHH
Confidence 123555555666643
No 46
>PRK00106 hypothetical protein; Provisional
Probab=33.14 E-value=2.8e+02 Score=30.85 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=28.7
Q ss_pred cchhHHHHHHHHhhHHHHH--HHhhhhHHHHHHHHHHHH
Q 014028 340 KQQIEELEKIVRLKQAEAD--MFQLKANEAKREAERLQR 376 (432)
Q Consensus 340 k~~~eeLEsiVrlKqAEA~--MfQ~kAdeArrEAE~l~r 376 (432)
..+..+||+|--|-+.||+ +++.--+++++|+-.+=|
T Consensus 153 ~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~ 191 (535)
T PRK00106 153 EQKKAELERVAALSQAEAREIILAETENKLTHEIATRIR 191 (535)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999877776 778888889988876633
No 47
>smart00400 ZnF_CHCC zinc finger.
Probab=33.12 E-value=35 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.498 Sum_probs=20.3
Q ss_pred eeEEcccCCCCchhhhHHHHHH
Q 014028 174 MLFRCRACNRTSELLGWVKDVF 195 (432)
Q Consensus 174 ~~f~C~~C~~~seLlg~vK~vf 195 (432)
..|||-+||..-|.+.+|+++.
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~~ 43 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKYD 43 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHHH
Confidence 5799999999999999999885
No 48
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=32.84 E-value=3.6e+02 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q 014028 364 ANEAKREAERLQR 376 (432)
Q Consensus 364 AdeArrEAE~l~r 376 (432)
.++|+.||+++..
T Consensus 95 ~~~A~~ea~~~~~ 107 (164)
T PRK14471 95 KEEAQVEGDKMIE 107 (164)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555544433
No 49
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=32.79 E-value=54 Score=30.64 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=39.3
Q ss_pred CCeeEEcccCCCCchhhhHHHHH-HhhhcccccHHHH--HHHHhhhhhhcccCCCchhhHHHHHHHHHHHHHh----CCC
Q 014028 172 SEMLFRCRACNRTSELLGWVKDV-FQHCAPAWDREAL--MRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMK----GGL 244 (432)
Q Consensus 172 lD~~f~C~~C~~~seLlg~vK~v-f~~ca~~w~~d~L--~keL~lv~rIfrGSed~rgK~L~~~~e~al~KLk----~g~ 244 (432)
.-+.|+|..||++-.=+.-++.+ ..+-+.+-+...+ .|..+-+.+-+..+. ...-.+...++++...|. +++
T Consensus 25 ~~~~~~c~~c~~~f~~~e~~~~~~i~VIKRDG~~v~Fd~~KI~~AI~kA~~a~~-~~~~~~~~i~~~V~~~l~~~~~~~I 103 (154)
T PRK00464 25 IRRRRECLACGKRFTTFERVELVPLLVIKKDGRREPFDREKLRRGLRRACEKRP-VSSEQIEAAVSRIERQLRASGEREV 103 (154)
T ss_pred eeeeeeccccCCcceEeEeccCcccEEEecCCcCCCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 45669999999975444422222 2233333333322 222222222222221 011123333444444443 246
Q ss_pred ChhHHHHHHHHHhhh
Q 014028 245 PESMACRGILLFFQE 259 (432)
Q Consensus 245 ~~~~~~~~il~ff~~ 259 (432)
+..++-+.+.+-+.+
T Consensus 104 sveEIqDiVE~~L~~ 118 (154)
T PRK00464 104 PSKEIGELVMEELKK 118 (154)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666666644
No 50
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=32.09 E-value=23 Score=26.38 Aligned_cols=30 Identities=33% Similarity=0.662 Sum_probs=16.8
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
|.||..|+.+.|+--++. |||.-=-+|.-+
T Consensus 1 CpIc~e~~~~~n~P~~L~---CGH~~c~~cl~~ 30 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLP---CGHVFCKDCLQK 30 (43)
T ss_dssp -TTT----TTSS-EEE-S---SS-EEEHHHHHH
T ss_pred CCccccccCCCCCCEEEe---CccHHHHHHHHH
Confidence 789999988888888887 777766666554
No 51
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=31.07 E-value=27 Score=33.29 Aligned_cols=43 Identities=33% Similarity=0.835 Sum_probs=31.1
Q ss_pred ccccccCCCCcccCcccccccc--ccCCCCceeEEecCCCcchhhhHhhh
Q 014028 107 TCEICTHRNGFCNLCMCVICNK--FDFEVNTCRWIGCDLCSHWTHTDCAI 154 (432)
Q Consensus 107 ~C~IC~~~~gFC~~C~C~IC~k--fD~~~d~~~Wi~Cd~Cgh~cHldCAL 154 (432)
.|++|..+ || -|-+|+. .=|-.+.-.=+.|+.|+...|-.|--
T Consensus 144 ~C~lC~~k-Gf----iCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 144 SCELCQQK-GF----ICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred HhHHHHhC-CC----CCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 58899987 55 3477776 22333334557999999999999976
No 52
>PF01196 Ribosomal_L17: Ribosomal protein L17; InterPro: IPR000456 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L17 is one of the proteins from the large ribosomal subunit. Bacterial L17 is a protein of 120 to 130 amino-acid residues while yeast YmL8 is twice as large (238 residues). The N-terminal half of YmL8 is colinear with the sequence of L17 from Escherichia coli.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3F1F_R 1VSP_L 3PYV_N 3PYR_N 3PYO_N 1VSA_L 3MS1_N 3F1H_R 3D5B_R 3MRZ_N ....
Probab=30.24 E-value=74 Score=27.60 Aligned_cols=52 Identities=31% Similarity=0.276 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhhhcHHHHHHHHHHHHHHHHhhcc
Q 014028 362 LKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSR 419 (432)
Q Consensus 362 ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~l~Eaee~r~~~~eelk~~e~s~ 419 (432)
.||.|+|+-||+| |.+||... -++.+.+.-.|. -.+-.+++|++|--.=..+
T Consensus 20 ~KAke~r~~aErl--It~ak~~~---~~~~r~~~~~l~-~~~~v~KLf~~l~pRy~~r 71 (97)
T PF01196_consen 20 AKAKELRPYAERL--ITLAKKGD---LHARRQALSWLR-DKELVKKLFKELAPRYADR 71 (97)
T ss_dssp HHHHHHHHHHHHH--HHHHTSST---HHHHHHHHHCSS-SHHHHHHHHTTHHHHTTTS
T ss_pred HHHHHHHHHHHHH--HHHhccCc---HHHHHHHHHHhc-chHHHHHHHHHHHHHHccC
Confidence 5899999999998 56667543 344455555555 4556778898886544333
No 53
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=29.70 E-value=24 Score=26.72 Aligned_cols=15 Identities=33% Similarity=1.136 Sum_probs=9.8
Q ss_pred eEEecCCCcchhhhH
Q 014028 137 RWIGCDLCSHWTHTD 151 (432)
Q Consensus 137 ~Wi~Cd~Cgh~cHld 151 (432)
.||.||.|+.|=.|.
T Consensus 2 ~WVQCd~C~KWR~lp 16 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP 16 (50)
T ss_dssp EEEE-TTT--EEEE-
T ss_pred eEEECCCCCceeeCC
Confidence 599999999998776
No 54
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=29.69 E-value=64 Score=30.50 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhh
Q 014028 364 ANEAKREAERLQRIALAKTDKSEEEYASSYLKLR 397 (432)
Q Consensus 364 AdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~ 397 (432)
.-|-+||+-||.-=.--|..-++|+||-+..-|+
T Consensus 27 iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk 60 (170)
T COG4396 27 IGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLK 60 (170)
T ss_pred HHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHH
Confidence 4578899999988888899999999999987665
No 55
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=29.29 E-value=26 Score=38.74 Aligned_cols=28 Identities=29% Similarity=0.927 Sum_probs=0.0
Q ss_pred cccCccccccccccCCCCceeEEecCCC------------cchhhhHhhh
Q 014028 117 FCNLCMCVICNKFDFEVNTCRWIGCDLC------------SHWTHTDCAI 154 (432)
Q Consensus 117 FC~~C~C~IC~kfD~~~d~~~Wi~Cd~C------------gh~cHldCAL 154 (432)
||+.|+ .+++..+.|..| |.|+|.-||+
T Consensus 236 lCrkCi----------~~~~~i~~C~fCps~dGaFkqT~dgrW~H~iCA~ 275 (669)
T COG5141 236 LCRKCI----------YGEYQIRCCSFCPSSDGAFKQTSDGRWGHVICAM 275 (669)
T ss_pred hhhhhc----------ccccceeEEEeccCCCCceeeccCCchHhHhHHH
No 56
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=29.19 E-value=27 Score=40.44 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=36.8
Q ss_pred ccccc-cCCCCCCccccccCCCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCccc
Q 014028 95 IACQT-QLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICM 161 (432)
Q Consensus 95 ~aCrs-~Lp~~dc~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~ 161 (432)
..|++ ++.+--|.|.||-...-- |-||+-- .-+ +=+.|..|||..|.+|+..-..+|-
T Consensus 1007 n~c~n~~s~~ri~~~~~~~~~~~~-----C~~C~l~---V~g-ss~~Cg~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1007 NHCRNGVSEVRITQCAICKGFTFQ-----CAICHLA---VRG-SSNFCGTCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred ccccCcccceeeeeccccccceee-----eeeEeeE---eec-cchhhccccccccHHHHHHHHhcCC
Confidence 44554 455666667666544332 5566541 222 2357999999999999987776665
No 57
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=29.07 E-value=38 Score=35.70 Aligned_cols=107 Identities=18% Similarity=0.320 Sum_probs=57.7
Q ss_pred hHHHHhHHhhccCCCcchhHHHhhhhhhhhhhhh-----hccCccccccC-CCCCCc------chHHHhhhhcccccccc
Q 014028 30 EEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVA-----INSGIQAFLHP-NISLSQ------TSLIEVFVYKRCRNIAC 97 (432)
Q Consensus 30 de~l~Lq~~lq~R~Dlt~~~l~~ahr~qLEilVa-----iktgi~aFl~p-~~~~s~------s~LveiFl~~~CrN~aC 97 (432)
++|-.||.+|+. .+.-..-..=|++..|.||. +... +.|.+| +.+-.. .....|=+.+.|.+..=
T Consensus 219 ~~y~~L~~kL~~--PI~~~~ni~i~~tl~drF~e~F~~~V~~N-p~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~ 295 (358)
T PF10272_consen 219 SEYRDLREKLRA--PIRIARNIVIHQTLSDRFVEAFKEQVEQN-PRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQ 295 (358)
T ss_pred HHHHHHHHHhhC--ccccCCCceECCCHHHHHHHHHHHHHHhC-CccccCCCccccCCccccccCCCCcEEEeccCCccc
Confidence 567778888865 33333344456666677764 2221 333344 111110 01114445667733221
Q ss_pred cc-cCCCCCCccccccCCCCcccCccccccccccCCCCceeEEe
Q 014028 98 QT-QLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIG 140 (432)
Q Consensus 98 rs-~Lp~~dc~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~ 140 (432)
.. .++ ..-+|..|-|+|-.|-.||--+=--=-++..|..|+.
T Consensus 296 ~g~~~~-~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~ 338 (358)
T PF10272_consen 296 EGSPLP-NEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLS 338 (358)
T ss_pred CCcccc-cCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhc
Confidence 22 233 2347999999999999998643211146777888874
No 58
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.74 E-value=8.5e+02 Score=27.09 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=10.7
Q ss_pred CChhHHHHHHHHHhhhh
Q 014028 244 LPESMACRGILLFFQEL 260 (432)
Q Consensus 244 ~~~~~~~~~il~ff~~~ 260 (432)
...+++...|..|+.+.
T Consensus 340 ~~~~~~~~~l~~~l~~~ 356 (650)
T TIGR03185 340 ALPAEHVKEIAAELAEI 356 (650)
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 33456677788877543
No 59
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=28.54 E-value=2.1e+02 Score=28.36 Aligned_cols=77 Identities=25% Similarity=0.314 Sum_probs=44.1
Q ss_pred hhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhH
Q 014028 286 IAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKAN 365 (432)
Q Consensus 286 ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAd 365 (432)
++.-|-|+.+.|=.=++ +.-||..-...||=-.+--....|...-+.|-+.---.-|.+++|..||++|=.+|++
T Consensus 84 l~~QV~ePLRaMv~GaP-----LEDARhL~qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~ 158 (209)
T cd07607 84 LSEQVAEPLRAMVYGAP-----LEDARHLKQRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSS 158 (209)
T ss_pred HHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 44445555554432221 4455555555555433433334444444443332224578999999999999999987
Q ss_pred HH
Q 014028 366 EA 367 (432)
Q Consensus 366 eA 367 (432)
=|
T Consensus 159 M~ 160 (209)
T cd07607 159 MN 160 (209)
T ss_pred HH
Confidence 54
No 60
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=28.43 E-value=1e+02 Score=28.32 Aligned_cols=44 Identities=30% Similarity=0.390 Sum_probs=37.1
Q ss_pred chhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHH
Q 014028 341 QQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEE 388 (432)
Q Consensus 341 ~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~Eee 388 (432)
..||||+.|+.-.++|.+.=|.-.+| .+.|.+++-.|.+.||.+
T Consensus 78 ~vieELdqi~~~~~~~~d~K~kiL~d----L~HLE~Vv~~KIaEIe~d 121 (125)
T PF11944_consen 78 YVIEELDQITGREQAEVDLKQKILDD----LRHLEKVVNSKIAEIERD 121 (125)
T ss_pred HHHHHHHHHHcchhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 46899999999999999988877765 557899999998888865
No 61
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.19 E-value=4.7e+02 Score=30.15 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHhhhhhhcccCCCchhhHHHH
Q 014028 210 ELDFVSRIFRGSEDPRGRKLYW 231 (432)
Q Consensus 210 eL~lv~rIfrGSed~rgK~L~~ 231 (432)
.|-+.--+++|+.-.-|..|.+
T Consensus 404 sLvLlDE~g~GtD~~eg~ala~ 425 (771)
T TIGR01069 404 SLVLFDELGAGTDPDEGSALAI 425 (771)
T ss_pred cEEEecCCCCCCCHHHHHHHHH
Confidence 4445556778887776666644
No 62
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=28.19 E-value=46 Score=36.28 Aligned_cols=57 Identities=26% Similarity=0.483 Sum_probs=38.6
Q ss_pred cccccc-ccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCchhh
Q 014028 123 CVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELL 188 (432)
Q Consensus 123 C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~seLl 188 (432)
|++|+. ---..| .-|.|+.|.-|-|-+|----...-. .+.-+..|+|-.|...-+-+
T Consensus 171 c~vC~~g~~~~~N--rmlqC~~C~~~fHq~Chqp~i~~~l-------~~D~~~~w~C~~C~~~~~~~ 228 (464)
T KOG4323|consen 171 CSVCYCGGPGAGN--RMLQCDKCRQWYHQACHQPLIKDEL-------AGDPFYEWFCDVCNRGPKKV 228 (464)
T ss_pred eeeeecCCcCccc--eeeeecccccHHHHHhccCCCCHhh-------ccCccceEeehhhccchhhc
Confidence 566664 233334 8999999999999999643222111 13468899999998766544
No 63
>PRK12704 phosphodiesterase; Provisional
Probab=28.02 E-value=3.9e+02 Score=29.41 Aligned_cols=67 Identities=31% Similarity=0.448 Sum_probs=40.1
Q ss_pred hhhhhhhhhhhhhhhhhHhHHHHHHH--HHhhccchhHHHHHHHHhhHHHHH--HHhhhhHHHHHHHHHHHH
Q 014028 309 KKARLSLDACDRELEDKAREVTELQM--ERTKKKQQIEELEKIVRLKQAEAD--MFQLKANEAKREAERLQR 376 (432)
Q Consensus 309 k~a~~~l~~~~~~l~~k~~~~~el~~--~~~~kk~~~eeLEsiVrlKqAEA~--MfQ~kAdeArrEAE~l~r 376 (432)
.+....|+.-..+|+.+..++.+.+- +.. ...+..+||.|--|-+.||+ ++..--+++++|+-.+=|
T Consensus 106 ekke~eL~~re~~Le~re~eLe~~~~~~~~~-~~~~~~~l~~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~ 176 (520)
T PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEEL-IEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIK 176 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444544432 222 33567889999988777766 777788889988876543
No 64
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=27.91 E-value=67 Score=27.00 Aligned_cols=52 Identities=27% Similarity=0.560 Sum_probs=31.9
Q ss_pred CCccccccCCCCcccCccccccccccCCCCceeEEecCC--CcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcc
Q 014028 105 DCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDL--CSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCR 179 (432)
Q Consensus 105 dc~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~--Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~ 179 (432)
.-.|.||-...|.| |.|.. |..+-|.-||.+.+..=... .. ....+..+||.
T Consensus 55 ~~~C~iC~~~~G~~--------------------i~C~~~~C~~~fH~~CA~~~g~~~~~~-~~--~~~~~~~~~C~ 108 (110)
T PF13832_consen 55 KLKCSICGKSGGAC--------------------IKCSHPGCSTAFHPTCARKAGLYFEIE-NE--EDNVQFIAYCP 108 (110)
T ss_pred CCcCcCCCCCCcee--------------------EEcCCCCCCcCCCHHHHHHCCCeEEee-ec--CCCceEEEECC
Confidence 44577777776766 55554 88899999999876432211 11 11456666764
No 65
>PTZ00121 MAEBL; Provisional
Probab=27.60 E-value=1.1e+03 Score=30.40 Aligned_cols=13 Identities=15% Similarity=0.329 Sum_probs=7.4
Q ss_pred hhhhHHHHHHhhh
Q 014028 186 ELLGWVKDVFQHC 198 (432)
Q Consensus 186 eLlg~vK~vf~~c 198 (432)
++..+.+-||..-
T Consensus 945 ~f~eC~e~lF~~S 957 (2084)
T PTZ00121 945 KFGGCLEYLFINS 957 (2084)
T ss_pred hHHHHHHHHHhhc
Confidence 4445666677443
No 66
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=27.41 E-value=34 Score=22.82 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=18.9
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
|.||...- .++... ..|||.-|.+|..+..
T Consensus 2 C~iC~~~~--~~~~~~---~~C~H~~c~~C~~~~~ 31 (45)
T cd00162 2 CPICLEEF--REPVVL---LPCGHVFCRSCIDKWL 31 (45)
T ss_pred CCcCchhh--hCceEe---cCCCChhcHHHHHHHH
Confidence 66776532 233333 3499999999987543
No 67
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=27.30 E-value=25 Score=22.93 Aligned_cols=10 Identities=40% Similarity=1.055 Sum_probs=7.8
Q ss_pred eEEcccCCCC
Q 014028 175 LFRCRACNRT 184 (432)
Q Consensus 175 ~f~C~~C~~~ 184 (432)
+|+|..||+.
T Consensus 1 q~~C~~C~k~ 10 (27)
T PF12171_consen 1 QFYCDACDKY 10 (27)
T ss_dssp -CBBTTTTBB
T ss_pred CCCcccCCCC
Confidence 6899999975
No 68
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=27.14 E-value=39 Score=24.54 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=15.6
Q ss_pred CCcccCccccccccccCCCCceeEEecCCCcchh
Q 014028 115 NGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWT 148 (432)
Q Consensus 115 ~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~c 148 (432)
+--|++|...|.-..-.+.++..|+ |.+|++.-
T Consensus 2 p~rC~~C~aylNp~~~~~~~~~~w~-C~~C~~~N 34 (40)
T PF04810_consen 2 PVRCRRCRAYLNPFCQFDDGGKTWI-CNFCGTKN 34 (40)
T ss_dssp S-B-TTT--BS-TTSEEETTTTEEE-ETTT--EE
T ss_pred ccccCCCCCEECCcceEcCCCCEEE-CcCCCCcC
Confidence 3457777777766644444666664 77777643
No 69
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=26.46 E-value=9.3e+02 Score=27.86 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhhchHHHH
Q 014028 365 NEAKREAERLQRIALAKTDKSEEEY 389 (432)
Q Consensus 365 deArrEAE~l~ri~~aK~ek~EeeY 389 (432)
.+|++||+.+-+-+....+.+..+.
T Consensus 564 ~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 564 LELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544444444444444333
No 70
>PRK15058 cytochrome b562; Provisional
Probab=26.45 E-value=2.7e+02 Score=25.67 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=41.2
Q ss_pred hhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhh
Q 014028 321 ELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSY 393 (432)
Q Consensus 321 ~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~ 393 (432)
.|++|+..-.|++-=+ .+++.| |+-|.+|++--=|-+.+||+.++..|.-| -.+|-.+|
T Consensus 69 kl~~k~~ds~e~K~Y~----~G~d~L--i~qID~a~~la~~GkL~eAK~~a~~l~~l--------R~eYHkky 127 (128)
T PRK15058 69 KLEDKAPDSPEMKDFR----HGFDIL--VGQIDGALKLANEGKVKEAQAAAEQLKTT--------RNAYHKKY 127 (128)
T ss_pred hhhccCCCCHHHHHHH----HHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHHHHHhc
Confidence 3445555555554221 356766 78899999999999999999999887654 45666555
No 71
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=25.96 E-value=1e+03 Score=27.25 Aligned_cols=43 Identities=33% Similarity=0.298 Sum_probs=28.1
Q ss_pred hhhhhhhhhhhhhhhHhHHHHHHHHHh----hccchhHHHHHHHHhh
Q 014028 311 ARLSLDACDRELEDKAREVTELQMERT----KKKQQIEELEKIVRLK 353 (432)
Q Consensus 311 a~~~l~~~~~~l~~k~~~~~el~~~~~----~kk~~~eeLEsiVrlK 353 (432)
-...+.+.+.|.++-.+.+-|++=.|. +...-+-+||.||..=
T Consensus 128 ~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~ 174 (683)
T PF08580_consen 128 WNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEM 174 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhc
Confidence 344566777777776666666654443 3336678899998766
No 72
>PLN03184 chloroplast Hsp70; Provisional
Probab=25.75 E-value=4e+02 Score=29.95 Aligned_cols=53 Identities=8% Similarity=0.005 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhhhh----chHHHHHhhhhhh-----------hhcHHHHHHHHHHHHHHHHhh
Q 014028 365 NEAKREAERLQRIALAKTD----KSEEEYASSYLKL-----------RLSEAEAEKQYLFEKIKLQES 417 (432)
Q Consensus 365 deArrEAE~l~ri~~aK~e----k~EeeYas~~~kl-----------~l~Eaee~r~~~~eelk~~e~ 417 (432)
.|||.++|.|=.-+..+.+ .+.++..+.+.++ ...+.++..+.+.+.++-+++
T Consensus 565 ~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~ 632 (673)
T PLN03184 565 VDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQ 632 (673)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3566667666554444442 2223333333322 334556666677777776664
No 73
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=25.68 E-value=39 Score=37.55 Aligned_cols=44 Identities=27% Similarity=0.761 Sum_probs=29.2
Q ss_pred ccccCCCCcccCccccccccccCCCCceeEEecCCC------------cchhhhHhhhhcCCcccCC
Q 014028 109 EICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLC------------SHWTHTDCAIRDGQICMGP 163 (432)
Q Consensus 109 ~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~C------------gh~cHldCALr~~~~g~g~ 163 (432)
.-|+.+|-||-.|-|-+= ---|+.| |.|.|+-|||---.+.-|.
T Consensus 164 s~~stepWfCeaC~~Gvs-----------~P~CElCPn~~GifKetDigrWvH~iCALYvpGVafg~ 219 (707)
T KOG0957|consen 164 SDCSTEPWFCEACLYGVS-----------LPHCELCPNRFGIFKETDIGRWVHAICALYVPGVAFGQ 219 (707)
T ss_pred ccCCCCchhhhhHhcCCC-----------CCccccCCCcCCcccccchhhHHHHHHHhhcCcccccc
Confidence 348999999999876432 1223322 6999999999655444443
No 74
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.56 E-value=1e+03 Score=29.34 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=7.9
Q ss_pred CCChhHHHHHHHHHh
Q 014028 243 GLPESMACRGILLFF 257 (432)
Q Consensus 243 g~~~~~~~~~il~ff 257 (432)
.+++..+...|-.++
T Consensus 200 ~~~~~~l~~~l~~~l 214 (1353)
T TIGR02680 200 KPDEGVLSDALTEAL 214 (1353)
T ss_pred CCChHHHHHHHHHhC
Confidence 455555555555544
No 75
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=25.08 E-value=1.9e+02 Score=29.46 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCchhhHHHHHHHHHHHHHhCC-CChhHHHHHHHHHhhhhcc
Q 014028 190 WVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGG-LPESMACRGILLFFQELEV 262 (432)
Q Consensus 190 ~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~rgK~L~~~~e~al~KLk~g-~~~~~~~~~il~ff~~~~~ 262 (432)
|.++|...-.+.--.+.|.+-|.=-.+......-.+++.|-++.+++|.+-++| ++..++.+.++.+-+++..
T Consensus 160 Fl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~el~~ 233 (335)
T PF11867_consen 160 FLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEELIKLAKELRE 233 (335)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence 778887777788888888888887777777777778899999999999999999 7899999999999888754
No 76
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=24.16 E-value=1.2e+02 Score=24.42 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=21.6
Q ss_pred hchHHHHHhhhhhhhhcHHHHHHHHHHH
Q 014028 383 DKSEEEYASSYLKLRLSEAEAEKQYLFE 410 (432)
Q Consensus 383 ek~EeeYas~~~kl~l~Eaee~r~~~~e 410 (432)
.++-.|| ++++|+|+.+.|+-||+.+-
T Consensus 29 ~~ln~EY-~kiLk~r~~~lEevKrk~LK 55 (56)
T PF08112_consen 29 SNLNMEY-EKILKQRRKELEEVKRKALK 55 (56)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 3566788 46899999999999988764
No 77
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.98 E-value=5.2e+02 Score=27.12 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=9.8
Q ss_pred HHHHHhhhhhhhhcHHHHHHHHH
Q 014028 386 EEEYASSYLKLRLSEAEAEKQYL 408 (432)
Q Consensus 386 EeeYas~~~kl~l~Eaee~r~~~ 408 (432)
||||-++-+=-+|+.+..++..+
T Consensus 74 EEE~isN~LlKkl~~l~keKe~L 96 (310)
T PF09755_consen 74 EEEFISNTLLKKLQQLKKEKETL 96 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 78
>KOG3280 consensus Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=22.95 E-value=2.4e+02 Score=27.29 Aligned_cols=56 Identities=29% Similarity=0.294 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhhhcHHHHHHHHHHHHH
Q 014028 354 QAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKI 412 (432)
Q Consensus 354 qAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~l~Eaee~r~~~~eel 412 (432)
+--++.+-.||+|||+=||.| |.++|-+--=-+|+.+.+..=|.|-. -=.++|++|
T Consensus 38 HErIe~t~ara~Ear~~aEkl--It~~~k~g~~~~~~~~~a~~~l~ekd-li~KlF~vl 93 (171)
T KOG3280|consen 38 HERIETTWARAKEARRYAEKL--ITLGKKAGSLHERTARMADGWLREKD-LLHKLFTVL 93 (171)
T ss_pred hhhhhhHHHHHHHHHHHHHHH--HHHHHhcCcHhHHHHHHHhcccccch-HHHHHHHHh
Confidence 334567889999999999988 66776666666777766666665544 334556655
No 79
>PRK00420 hypothetical protein; Validated
Probab=22.81 E-value=1.9e+02 Score=25.93 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHhCCCChhHHHHHHHHHh
Q 014028 227 RKLYWKCEELLEKMKGGLPESMACRGILLFF 257 (432)
Q Consensus 227 K~L~~~~e~al~KLk~g~~~~~~~~~il~ff 257 (432)
+.|.+++..+..||....+.. -.+.|+.++
T Consensus 72 ~il~~ki~~L~~kL~~e~~~~-ri~Ei~~~l 101 (112)
T PRK00420 72 EVLIEKINYLAKKLKEDEDIE-RITEIIRYL 101 (112)
T ss_pred HHHHHHHHHHHHhCccccchh-HHHHHHHHH
Confidence 579999999999999884433 334444443
No 80
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=22.58 E-value=1.1e+02 Score=33.69 Aligned_cols=30 Identities=40% Similarity=0.581 Sum_probs=25.5
Q ss_pred HHHHHhhHHH--HHHHhhhhHHHHHHHHHHHH
Q 014028 347 EKIVRLKQAE--ADMFQLKANEAKREAERLQR 376 (432)
Q Consensus 347 EsiVrlKqAE--A~MfQ~kAdeArrEAE~l~r 376 (432)
|=+||||+|| |-.-|.+|.+|.+|++.+.+
T Consensus 431 Ellvrl~eaeea~~~a~~r~~~~eqe~ek~~k 462 (488)
T PF06548_consen 431 ELLVRLREAEEAASVAQERAMDAEQENEKAKK 462 (488)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4489999999 45789999999999998765
No 81
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=22.46 E-value=4.7e+02 Score=21.93 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=40.3
Q ss_pred hhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhh
Q 014028 285 RIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKA 364 (432)
Q Consensus 285 ~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kA 364 (432)
-+.+-|++++..|++++..-..+...+. ..+ ++..-. .||+-.=..=+.++++||.-|++=++....|+.-.
T Consensus 5 ~v~~ev~~sl~~l~~~~~~~~~~~~~~~-~~~----e~~~~~---~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~ 76 (97)
T PF09177_consen 5 VVKDEVQSSLDRLESLYRRWQRLRSDTS-SSE----ELKWLK---RELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSE 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHCC--HH----HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCC-CcH----hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCH
Confidence 3556678888888887753333333332 111 111111 12222222223569999999999888888886655
Q ss_pred HH
Q 014028 365 NE 366 (432)
Q Consensus 365 de 366 (432)
+|
T Consensus 77 ~E 78 (97)
T PF09177_consen 77 EE 78 (97)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 82
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.08 E-value=5.9e+02 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Q 014028 342 QIEELEKIVRLKQAEADMFQLKANEAKREAERL 374 (432)
Q Consensus 342 ~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l 374 (432)
+-|+|+++++.=+|++.-+..+-+|-+++...+
T Consensus 38 qkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea 70 (107)
T PF09304_consen 38 QKDQLRNALQSLQAQNASRNQRIAELQAKIDEA 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999999999888777766665433
No 83
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.02 E-value=40 Score=24.12 Aligned_cols=25 Identities=28% Similarity=0.613 Sum_probs=14.6
Q ss_pred cccccc-c--cCCC--CceeEEecCCCcch
Q 014028 123 CVICNK-F--DFEV--NTCRWIGCDLCSHW 147 (432)
Q Consensus 123 C~IC~k-f--D~~~--d~~~Wi~Cd~Cgh~ 147 (432)
|+-|+. | |+++ .+-.++.|..|+|.
T Consensus 5 CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~ 34 (37)
T PF13719_consen 5 CPNCQTRFRVPDDKLPAGGRKVRCPKCGHV 34 (37)
T ss_pred CCCCCceEEcCHHHcccCCcEEECCCCCcE
Confidence 455555 3 4332 34558888888774
No 84
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=21.81 E-value=9.1e+02 Score=29.05 Aligned_cols=95 Identities=24% Similarity=0.212 Sum_probs=61.2
Q ss_pred HHhhhhhhHHh---hhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHH---
Q 014028 295 RKMEMVADEKM---RMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAK--- 368 (432)
Q Consensus 295 ~~~e~v~~ek~---~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeAr--- 368 (432)
..+.-++..|+ .+...||...+.+...+++---++.|-++.++.. .+|-| =+|=-+|.-+-+|.--+.|+
T Consensus 337 ~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~---~~e~e-qLr~elaql~a~r~q~eka~~~~ 412 (980)
T KOG0980|consen 337 QLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQEN---REEQE-QLRNELAQLLASRTQLEKAQVLV 412 (980)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3345667777776666666666666777776644 34444 33445677778898888998
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhhh
Q 014028 369 REAERLQRIALAKTDKSEEEYASSY 393 (432)
Q Consensus 369 rEAE~l~ri~~aK~ek~EeeYas~~ 393 (432)
.|+|+-.-+...+.+|+-|-|+..+
T Consensus 413 ee~e~~~l~~e~ry~klkek~t~l~ 437 (980)
T KOG0980|consen 413 EEAENKALAAENRYEKLKEKYTELR 437 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666543
No 85
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.58 E-value=8e+02 Score=29.91 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=6.9
Q ss_pred hHHHHhHHhhcc
Q 014028 30 EEFLTLQRFVQG 41 (432)
Q Consensus 30 de~l~Lq~~lq~ 41 (432)
++...|.+.++.
T Consensus 443 ~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 443 GEILQLRKKIEN 454 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 555666666643
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.12 E-value=1.2e+03 Score=28.41 Aligned_cols=72 Identities=25% Similarity=0.357 Sum_probs=31.2
Q ss_pred hhhhhHhHHHHHHHH---HhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhh
Q 014028 321 ELEDKAREVTELQME---RTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKL 396 (432)
Q Consensus 321 ~l~~k~~~~~el~~~---~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl 396 (432)
.+..+..+++||+.. .+.+-+.+++|..=++=+..|-+-+-....+++.|+|.++ .+..++++.|++...+|
T Consensus 711 ~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~----~e~~e~~~~~~~~~~~l 785 (1074)
T KOG0250|consen 711 RIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIE----LEAQELEEYYAAGREKL 785 (1074)
T ss_pred HHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 334556666666662 2222233333333333333333333333344444444433 23345556666555554
No 87
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=20.99 E-value=2.8e+02 Score=24.89 Aligned_cols=51 Identities=39% Similarity=0.463 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhh------hhcHHHHHHHHHHHHHH
Q 014028 348 KIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKL------RLSEAEAEKQYLFEKIK 413 (432)
Q Consensus 348 siVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl------~l~Eaee~r~~~~eelk 413 (432)
..-|||||. .||.+|++.|+. +.|+||...+++- --.+++.+=+.++.+|+
T Consensus 29 r~~RLKqAK--------~EA~~EI~~yr~-------~kE~ef~~~ea~~~g~~~~~~~~l~~et~~ki~~ik 85 (113)
T TIGR01147 29 KTKRLKQAK--------EEAQKEVEKYKQ-------QREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIK 85 (113)
T ss_pred HHHHHHHHH--------HHHHHHHHHHHH-------HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 456788886 478888888875 4566665544432 23344444455555554
No 88
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=20.83 E-value=65 Score=25.19 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.3
Q ss_pred CCCeeEEcccCCCCc
Q 014028 171 PSEMLFRCRACNRTS 185 (432)
Q Consensus 171 ~lD~~f~C~~C~~~s 185 (432)
..+.+|+|..||..|
T Consensus 40 ~~~i~y~C~~Cg~~N 54 (54)
T PF10058_consen 40 FEEIQYRCPYCGALN 54 (54)
T ss_pred CCceEEEcCCCCCcC
Confidence 467799999999764
No 89
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.76 E-value=8.3e+02 Score=24.21 Aligned_cols=66 Identities=29% Similarity=0.447 Sum_probs=34.3
Q ss_pred hhhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHH
Q 014028 284 NRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADM 359 (432)
Q Consensus 284 ~~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~M 359 (432)
..-|..|.+-+..+|.|++ -+|..=..-|+... +.+-|..++-++...+. ...+| |-.+++||++|
T Consensus 77 ~~~A~~V~~RI~~vE~Va~---ALF~EWe~EL~~Y~---~~sLR~~S~~kL~~tr~--~Y~~L--~~aM~~Ae~km 142 (201)
T PF11172_consen 77 EDAAEEVSDRIDAVEDVAD---ALFDEWEQELDQYS---NASLRRASEQKLAETRR--RYAQL--IKAMRRAESKM 142 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHhc
Confidence 3455667777777787775 34443333333321 12333333434433322 24444 55688899888
No 90
>PHA02277 hypothetical protein
Probab=20.67 E-value=2.6e+02 Score=26.17 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=62.5
Q ss_pred CchhhHHHHHHHHHHHHHhCC-CChhHHHHHHHHHhhhhccCCCcccccCCCCcccChhhhhhhhhHhHHHHHHHhhhhh
Q 014028 223 DPRGRKLYWKCEELLEKMKGG-LPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVA 301 (432)
Q Consensus 223 d~rgK~L~~~~e~al~KLk~g-~~~~~~~~~il~ff~~~~~~~~k~~~~~~~~~l~~~~~~~~~ia~~~~ea~~~~e~v~ 301 (432)
...||.+-++-+.-|.+|-+. |++++|...++..- ..... ...+++-+.-+|.+-+--+... =-+|.
T Consensus 28 ~v~gK~v~ek~~KqL~Ri~~RsVSledaT~Ia~~L~-~h~~q-------~vss~l~~~~~a~dl~~~iMeD----ELgi~ 95 (150)
T PHA02277 28 TVDGKQVDEKTAKQLDRIGSRSVSLEEATRIAKVLN-AVTAQ-------EVTGDFNDAFNAIDLMMIIMED----ELGVT 95 (150)
T ss_pred cccccccchhhHHHHHHHhcccccHHHHHHHHHHHH-HHHHH-------HHHHHHHHHHhHHHHHHHHHHH----HhCCC
Confidence 346788888888899999887 89999988777632 21110 0011111111111111111111 11334
Q ss_pred hHHhhh-hhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhH
Q 014028 302 DEKMRM-FKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQ 354 (432)
Q Consensus 302 ~ek~~~-~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKq 354 (432)
++|+.- +.+-..-.++ -+++|..++.+-|-+...||.+.|+=|.+|.+|-
T Consensus 96 eek~~KA~~kln~k~ea---y~ke~qe~~~~~q~~e~~~~~e~dsnekvi~~k~ 146 (150)
T PHA02277 96 QEKVGKAKDKLNEKREA---YLKEKQEELRQKQQEEAQKKTESDSNEKVIQLKK 146 (150)
T ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHhhccccCcchhhhhcCC
Confidence 444332 1111112222 3445666666777777778888899999888873
No 91
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.59 E-value=40 Score=39.30 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=34.0
Q ss_pred CccccccccccCCCCceeEEecCCCcch-hhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 120 LCMCVICNKFDFEVNTCRWIGCDLCSHW-THTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 120 ~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~-cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
.|-|.||.--|- .-.-|.||.|-.. -|+.|-=-.- +--.-..|||..|.-
T Consensus 215 ~~~C~IC~~~Dp---EdVLLLCDsCN~~~YH~YCLDPdl-----------~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDP---EDVLLLCDSCNKVYYHVYCLDPDL-----------SESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCCh---HHhheeecccccceeeccccCccc-----------ccccccceecCcchh
Confidence 466777877653 2367899999999 9999942111 112345899999963
No 92
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=20.43 E-value=17 Score=40.99 Aligned_cols=78 Identities=19% Similarity=0.497 Sum_probs=52.6
Q ss_pred CccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCchhhhHHHHHHhhhc
Q 014028 120 LCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCA 199 (432)
Q Consensus 120 ~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~seLlg~vK~vf~~ca 199 (432)
.|.|++|.+|--...+---+-|++|..|-|-.|---.-. +---...|.+|.|-.|. +----||++-..-+
T Consensus 145 ~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd-------~~~q~~vD~~~~CS~CR---~es~qvKdi~~~vq 214 (694)
T KOG4443|consen 145 LSYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDD-------KYMQAQVDLQYKCSTCR---GESYQVKDISDALQ 214 (694)
T ss_pred cccCchHHHhhhhccchhhHHHHHhcccccCCCCccchH-------HHHHHhhhhhcccceee---hhhhhhhhHHHHHH
Confidence 689999999744444444578999999999988432222 11124567899999999 22236777776666
Q ss_pred ccccHHHH
Q 014028 200 PAWDREAL 207 (432)
Q Consensus 200 ~~w~~d~L 207 (432)
+.|...++
T Consensus 215 e~~~~k~~ 222 (694)
T KOG4443|consen 215 ETWKAKDK 222 (694)
T ss_pred hhcchhhc
Confidence 77765543
No 93
>PF14768 RPA_interact_C: Replication protein A interacting C-terminal
Probab=20.40 E-value=59 Score=26.93 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=20.4
Q ss_pred ccCCCCcccCccccccccccCCCCceeEEecCCCcchh
Q 014028 111 CTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWT 148 (432)
Q Consensus 111 C~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~c 148 (432)
|...|.|.-. +.+-++.+|+.|+.|+.|.
T Consensus 52 C~~~p~F~v~---------~~~~~~~L~~~C~~Cd~~~ 80 (82)
T PF14768_consen 52 CSSTPQFSVE---------PGFGESSLYMSCEACDFLE 80 (82)
T ss_pred CCCCCEEEEe---------cCCCchhheeECCCCCcce
Confidence 5667777622 3444559999999999773
Done!