Query 014028
Match_columns 432
No_of_seqs 98 out of 116
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lqh_A Histone-lysine N-methyl 97.1 0.0027 9.1E-08 58.5 10.2 58 122-187 4-66 (183)
2 2k16_A Transcription initiatio 96.1 0.0028 9.7E-08 49.5 2.8 48 122-183 20-67 (75)
3 2kgg_A Histone demethylase jar 95.6 0.0038 1.3E-07 46.1 1.3 49 120-181 2-51 (52)
4 1we9_A PHD finger family prote 95.3 0.0027 9.1E-08 48.2 -0.3 49 124-184 10-58 (64)
5 1wew_A DNA-binding family prot 95.0 0.0097 3.3E-07 47.3 2.1 50 125-183 20-71 (78)
6 3asl_A E3 ubiquitin-protein li 94.4 0.043 1.5E-06 43.0 4.5 64 107-184 4-69 (70)
7 3shb_A E3 ubiquitin-protein li 93.6 0.032 1.1E-06 44.8 2.5 63 107-183 12-76 (77)
8 1wep_A PHF8; structural genomi 93.4 0.02 7E-07 45.3 0.9 49 125-185 16-64 (79)
9 1wee_A PHD finger family prote 93.2 0.023 7.8E-07 44.3 0.8 46 125-183 20-65 (72)
10 2ri7_A Nucleosome-remodeling f 93.0 0.011 3.8E-07 52.2 -1.2 49 125-185 12-60 (174)
11 2xb1_A Pygopus homolog 2, B-ce 92.7 0.045 1.5E-06 45.9 2.1 59 120-187 3-64 (105)
12 2vpb_A Hpygo1, pygopus homolog 92.7 0.048 1.6E-06 42.4 2.0 54 120-182 8-64 (65)
13 3kqi_A GRC5, PHD finger protei 92.0 0.034 1.2E-06 43.7 0.4 48 124-183 13-60 (75)
14 1wen_A Inhibitor of growth fam 91.8 0.082 2.8E-06 41.7 2.4 44 125-185 20-66 (71)
15 1wem_A Death associated transc 91.0 0.08 2.7E-06 41.4 1.6 50 125-183 20-69 (76)
16 2jmi_A Protein YNG1, ING1 homo 90.8 0.063 2.2E-06 44.5 0.9 41 125-182 30-74 (90)
17 2lv9_A Histone-lysine N-methyl 90.5 0.12 4.3E-06 42.6 2.4 45 125-184 32-76 (98)
18 2rsd_A E3 SUMO-protein ligase 90.3 0.063 2.1E-06 41.5 0.4 48 125-182 14-63 (68)
19 1weu_A Inhibitor of growth fam 90.0 0.1 3.5E-06 43.3 1.5 44 125-185 40-86 (91)
20 2e6s_A E3 ubiquitin-protein li 89.7 0.16 5.5E-06 40.6 2.4 62 107-182 12-75 (77)
21 3v43_A Histone acetyltransfera 89.5 0.2 6.9E-06 41.9 3.0 55 116-183 56-111 (112)
22 1wil_A KIAA1045 protein; ring 89.0 0.26 9E-06 41.1 3.2 62 122-188 17-80 (89)
23 3ask_A E3 ubiquitin-protein li 88.6 0.21 7.2E-06 47.6 2.7 66 105-184 158-225 (226)
24 3kv5_D JMJC domain-containing 88.4 0.092 3.2E-06 54.6 0.2 48 124-183 40-87 (488)
25 3c6w_A P28ING5, inhibitor of g 88.4 0.11 3.8E-06 39.5 0.5 42 125-183 13-57 (59)
26 3o70_A PHD finger protein 13; 88.2 0.14 4.6E-06 40.0 0.9 44 125-183 23-66 (68)
27 3o7a_A PHD finger protein 13 v 88.2 0.14 4.9E-06 37.5 1.0 44 124-182 7-50 (52)
28 1x4i_A Inhibitor of growth pro 88.1 0.11 3.7E-06 40.9 0.3 42 125-183 10-54 (70)
29 1f62_A Transcription factor WS 87.5 0.32 1.1E-05 35.1 2.5 48 123-184 3-50 (51)
30 3pur_A Lysine-specific demethy 86.8 0.21 7.1E-06 52.8 1.7 52 121-184 43-94 (528)
31 2vnf_A ING 4, P29ING4, inhibit 86.8 0.16 5.3E-06 38.6 0.5 42 125-183 14-58 (60)
32 2g6q_A Inhibitor of growth pro 86.5 0.16 5.6E-06 38.9 0.5 42 125-183 15-59 (62)
33 3kv4_A PHD finger protein 8; e 84.4 0.13 4.4E-06 53.1 -1.2 50 123-184 7-56 (447)
34 2lri_C Autoimmune regulator; Z 76.3 1.1 3.9E-05 34.7 1.9 45 122-183 14-58 (66)
35 2l43_A N-teminal domain from h 75.1 0.93 3.2E-05 36.8 1.2 48 122-183 27-74 (88)
36 2ysm_A Myeloid/lymphoid or mix 73.4 1.4 4.8E-05 36.4 1.9 55 115-183 48-103 (111)
37 2kwj_A Zinc finger protein DPF 73.3 1 3.6E-05 37.7 1.1 52 116-181 53-105 (114)
38 2ku7_A MLL1 PHD3-CYP33 RRM chi 72.3 1 3.4E-05 36.7 0.7 17 137-153 1-17 (140)
39 2ku3_A Bromodomain-containing 71.8 1.4 4.8E-05 34.6 1.4 48 121-182 17-64 (71)
40 4bbq_A Lysine-specific demethy 66.5 2.2 7.6E-05 35.2 1.6 44 134-184 71-114 (117)
41 2fnf_X Putative RAS effector N 66.4 2.5 8.5E-05 33.1 1.8 32 114-154 34-65 (72)
42 1t2k_D Cyclic-AMP-dependent tr 64.5 12 0.00042 28.1 5.3 47 334-380 15-61 (61)
43 3o36_A Transcription intermedi 63.4 2.7 9.2E-05 37.4 1.7 42 342-383 139-180 (184)
44 3u5n_A E3 ubiquitin-protein li 61.6 3.9 0.00013 37.2 2.4 39 136-185 17-55 (207)
45 2l5u_A Chromodomain-helicase-D 59.2 4.7 0.00016 30.4 2.1 44 123-183 14-57 (61)
46 1rfh_A RAS association (ralgds 56.8 3.9 0.00013 30.6 1.3 32 114-154 21-52 (59)
47 2ecm_A Ring finger and CHY zin 53.7 4.3 0.00015 28.3 1.0 33 122-157 7-40 (55)
48 2puy_A PHD finger protein 21A; 53.4 4.3 0.00015 30.2 1.0 44 122-182 7-50 (60)
49 1jnm_A Proto-oncogene C-JUN; B 52.8 14 0.00048 27.9 3.8 48 333-380 14-61 (62)
50 2yt5_A Metal-response element- 52.3 5.1 0.00017 30.0 1.3 53 122-183 8-60 (66)
51 2yql_A PHD finger protein 21A; 48.8 3.9 0.00013 30.1 0.1 43 123-182 12-54 (56)
52 2e6r_A Jumonji/ARID domain-con 48.6 3.5 0.00012 33.6 -0.1 47 122-182 18-64 (92)
53 3h0g_I DNA-directed RNA polyme 47.9 11 0.00039 31.6 2.9 39 116-155 5-45 (113)
54 2egp_A Tripartite motif-contai 47.2 11 0.00038 28.0 2.5 52 122-187 14-65 (79)
55 2wt7_A Proto-oncogene protein 46.0 45 0.0015 25.3 5.7 47 334-380 16-62 (63)
56 1xwh_A Autoimmune regulator; P 42.2 6.9 0.00024 29.8 0.6 36 137-183 19-54 (66)
57 1wev_A Riken cDNA 1110020M19; 41.3 9.7 0.00033 30.7 1.4 54 121-183 17-71 (88)
58 1iym_A EL5; ring-H2 finger, ub 41.3 8.4 0.00029 26.8 0.9 33 122-157 7-40 (55)
59 1v5n_A PDI-like hypothetical p 40.5 17 0.0006 29.3 2.8 37 122-162 49-85 (89)
60 1ptq_A Protein kinase C delta 40.1 13 0.00044 26.1 1.8 35 114-154 10-44 (50)
61 1mm2_A MI2-beta; PHD, zinc fin 40.0 10 0.00035 28.5 1.3 46 122-184 11-56 (61)
62 3bqp_A Proactivator polypeptid 39.6 63 0.0022 24.1 5.7 65 186-253 10-75 (80)
63 3pfq_A PKC-B, PKC-beta, protei 39.0 9.4 0.00032 40.0 1.3 19 137-155 64-82 (674)
64 2ea6_A Ring finger protein 4; 38.1 7.1 0.00024 28.1 0.1 35 122-156 17-52 (69)
65 1ci6_A Transcription factor AT 37.9 64 0.0022 24.5 5.5 46 334-379 16-61 (63)
66 3uej_A NPKC-delta, protein kin 37.3 16 0.00053 27.4 1.9 36 114-155 19-54 (65)
67 2ct2_A Tripartite motif protei 36.5 15 0.00051 27.7 1.8 51 122-187 17-68 (88)
68 1e4u_A Transcriptional repress 35.4 15 0.00052 28.6 1.7 31 143-187 32-62 (78)
69 2enn_A NPKC-theta, protein kin 34.3 15 0.00052 28.6 1.5 36 114-155 33-68 (77)
70 1v87_A Deltex protein 2; ring- 34.0 16 0.00055 29.2 1.6 41 134-184 51-91 (114)
71 1nkl_A NK-lysin; saposin fold, 34.0 98 0.0033 23.8 6.1 64 187-253 10-73 (78)
72 3haj_A Human pacsin2 F-BAR; pa 34.0 3.8E+02 0.013 27.0 15.8 31 226-256 56-89 (486)
73 3oja_B Anopheles plasmodium-re 33.7 2.3E+02 0.0079 28.5 10.4 128 280-413 455-582 (597)
74 2eli_A Protein kinase C alpha 33.6 40 0.0014 26.7 3.9 38 114-157 27-64 (85)
75 2enz_A NPKC-theta, protein kin 33.2 15 0.00052 27.6 1.3 36 114-155 22-57 (65)
76 2kiz_A E3 ubiquitin-protein li 32.8 16 0.00056 26.5 1.4 32 122-157 16-48 (69)
77 1y8f_A UNC-13 homolog A, MUNC1 32.8 16 0.00055 27.6 1.3 36 114-155 23-58 (66)
78 2qyp_A Proactivator polypeptid 32.4 94 0.0032 24.2 5.9 63 187-253 14-78 (91)
79 2ep4_A Ring finger protein 24; 32.2 20 0.0007 26.4 1.8 33 122-157 17-49 (74)
80 3v43_A Histone acetyltransfera 31.6 20 0.00068 29.7 1.9 32 122-153 7-41 (112)
81 1fp0_A KAP-1 corepressor; PHD 31.0 22 0.00074 29.3 1.9 48 122-186 27-74 (88)
82 3vkg_A Dynein heavy chain, cyt 30.9 5.7E+02 0.02 32.8 14.9 15 143-157 1631-1645(3245)
83 2ecw_A Tripartite motif-contai 30.8 17 0.00056 27.0 1.1 50 122-186 21-70 (85)
84 2xeu_A Ring finger protein 4; 30.4 5.3 0.00018 28.4 -1.7 36 122-157 5-41 (64)
85 2efk_A CDC42-interacting prote 30.2 3.2E+02 0.011 24.9 13.9 37 382-418 181-220 (301)
86 1x4j_A Ring finger protein 38; 29.3 15 0.00051 27.4 0.6 32 122-156 25-56 (75)
87 2ecv_A Tripartite motif-contai 28.4 10 0.00036 28.2 -0.4 50 122-186 21-70 (85)
88 3ng2_A RNF4, snurf, ring finge 27.9 9.8 0.00034 27.7 -0.6 35 122-156 12-47 (71)
89 3nw0_A Non-structural maintena 27.5 31 0.0011 32.4 2.6 119 4-157 93-212 (238)
90 2yuu_A NPKC-delta, protein kin 27.4 29 0.00098 27.3 2.0 38 114-157 27-64 (83)
91 2ct0_A Non-SMC element 1 homol 27.3 23 0.00078 27.9 1.4 31 123-158 18-48 (74)
92 2ro1_A Transcription intermedi 27.2 22 0.00075 32.1 1.5 48 122-186 4-51 (189)
93 2db6_A SH3 and cysteine rich d 27.1 19 0.00064 27.9 0.8 21 137-157 44-64 (74)
94 2l0b_A E3 ubiquitin-protein li 27.0 21 0.00073 27.8 1.2 32 122-156 42-73 (91)
95 1jm7_A BRCA1, breast cancer ty 26.9 18 0.00062 28.6 0.8 47 122-186 23-69 (112)
96 4gne_A Histone-lysine N-methyl 26.6 25 0.00085 29.7 1.6 40 123-181 18-59 (107)
97 1loi_A Cyclic 3',5'-AMP specif 25.9 17 0.00057 23.8 0.3 19 175-194 5-23 (26)
98 1gh9_A 8.3 kDa protein (gene M 25.8 18 0.00061 28.8 0.5 23 123-147 7-29 (71)
99 4ayc_A E3 ubiquitin-protein li 25.6 37 0.0013 28.4 2.5 44 122-186 55-98 (138)
100 1of9_A Pore-forming peptide am 25.1 1.3E+02 0.0045 23.0 5.4 63 187-253 11-74 (77)
101 2l7p_A Histone-lysine N-methyl 24.8 22 0.00076 30.0 1.0 17 135-151 25-41 (100)
102 2k6i_A Uncharacterized protein 24.7 34 0.0012 26.4 1.8 38 347-385 16-53 (56)
103 2zrr_A Mundticin KS immunity p 24.0 89 0.0031 27.2 4.6 47 215-262 24-70 (118)
104 2ysl_A Tripartite motif-contai 23.8 40 0.0014 24.5 2.1 46 122-185 22-67 (73)
105 2d8t_A Dactylidin, ring finger 23.7 42 0.0014 24.6 2.3 44 122-186 17-60 (71)
106 1d0q_A DNA primase; zinc-bindi 23.7 35 0.0012 27.8 1.9 23 173-195 56-78 (103)
107 2dkt_A Ring finger and CHY zin 23.6 34 0.0012 30.5 2.0 38 123-183 86-123 (143)
108 2i1j_A Moesin; FERM, coiled-co 23.3 1.2E+02 0.0041 31.9 6.4 84 296-379 304-401 (575)
109 2ect_A Ring finger protein 126 23.2 23 0.0008 26.3 0.7 32 122-157 17-49 (78)
110 3qt1_I DNA-directed RNA polyme 23.1 24 0.00083 30.7 0.9 11 175-185 92-102 (133)
111 1faq_A RAF-1; transferase, ser 22.7 24 0.00081 25.0 0.7 31 114-154 13-43 (52)
112 2v0o_A FCHO2, FCH domain only 22.3 4.2E+02 0.014 23.7 13.8 40 380-419 170-211 (276)
113 2kwj_A Zinc finger protein DPF 22.0 31 0.0011 28.6 1.3 31 123-153 4-38 (114)
114 2k19_A Putative piscicolin 126 21.9 90 0.0031 26.4 4.1 46 216-262 5-50 (98)
115 1rp3_B Anti sigma factor FLGM; 21.8 90 0.0031 25.1 4.0 29 230-258 57-88 (88)
116 2au3_A DNA primase; zinc ribbo 21.2 65 0.0022 32.0 3.7 22 174-195 54-75 (407)
117 2ckl_A Polycomb group ring fin 20.3 1.2E+02 0.0042 23.9 4.5 45 122-186 17-61 (108)
No 1
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=97.09 E-value=0.0027 Score=58.46 Aligned_cols=58 Identities=22% Similarity=0.725 Sum_probs=40.8
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCC-CCC---CCCeeEEcccCCCCchh
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKS-GAC---PSEMLFRCRACNRTSEL 187 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g-~~~---~lD~~f~C~~C~~~seL 187 (432)
.|+||.+ |+++-....||.||.|..|-|..|. |+ +... ... ..+..|+|..|-....-
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cv------gi--~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCE------NL--SDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGS------SC--CHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhcc------cc--CHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 4789999 6666557889999999999999996 22 1000 000 01248999999888764
No 2
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=96.11 E-value=0.0028 Score=49.47 Aligned_cols=48 Identities=40% Similarity=0.843 Sum_probs=34.6
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
.|.+|.+.+ ++-.||.||.|..|-|+.|. |+ +.. ...++.|+|..|-.
T Consensus 20 ~C~~C~~~~---~~~~mi~CD~C~~wfH~~Cv------~~--~~~---~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 20 ICPGCNKPD---DGSPMIGCDDCDDWYHWPCV------GI--MAA---PPEEMQWFCPKCAN 67 (75)
T ss_dssp CBTTTTBCC---SSCCEEECSSSSSEEEHHHH------TC--SSC---CCSSSCCCCTTTHH
T ss_pred CCCCCCCCC---CCCCEEEcCCCCcccccccC------CC--Ccc---CCCCCCEEChhccC
Confidence 356888876 35689999999999999995 22 111 12357899999943
No 3
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.56 E-value=0.0038 Score=46.14 Aligned_cols=49 Identities=24% Similarity=0.741 Sum_probs=35.2
Q ss_pred CccccccccccCCCCceeEEecC-CCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccC
Q 014028 120 LCMCVICNKFDFEVNTCRWIGCD-LCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRAC 181 (432)
Q Consensus 120 ~C~C~IC~kfD~~~d~~~Wi~Cd-~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C 181 (432)
.|.|++|.+-++ ++-.||.|| .|..|-|+.|. |+.. . ...+..|+|..|
T Consensus 2 ~c~cc~C~~p~~--~~~~mI~Cd~~C~~WfH~~Cv------gl~~--~---~~~~~~~~C~~C 51 (52)
T 2kgg_A 2 VCAAQNCQRPCK--DKVDWVQCDGGCDEWFHQVCV------GVSP--E---MAENEDYICINC 51 (52)
T ss_dssp CCSCTTCCCCCC--TTCCEEECTTTTCCEEETTTT------TCCH--H---HHHHSCCCCSCC
T ss_pred cccCCCCcCccC--CCCcEEEeCCCCCccCccccc------CCCc--c---ccCCCCEECCCC
Confidence 489999999432 356899999 99999999996 2210 0 012367999888
No 4
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.31 E-value=0.0027 Score=48.23 Aligned_cols=49 Identities=27% Similarity=0.704 Sum_probs=32.6
Q ss_pred cccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 124 VICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 124 ~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
.+|.+-++ +.-.||.||.|..|-|..|. |+.... ......|+|..|-.+
T Consensus 10 ~~C~~~~~--~~~~mI~Cd~C~~WfH~~Cv------gl~~~~----~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 10 GACGESYA--ADEFWICCDLCEMWFHGKCV------KITPAR----AEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSSCCCCC--SSSCEEECSSSCCEEETTTT------TCCTTG----GGGCSSCCCHHHHTT
T ss_pred CCCCCccC--CCCCEEEccCCCCCCCcccc------CcChhH----hcCCCcEECCCCcCc
Confidence 48888432 23579999999999999996 331110 112258999999543
No 5
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.96 E-value=0.0097 Score=47.25 Aligned_cols=50 Identities=26% Similarity=0.606 Sum_probs=33.9
Q ss_pred ccccccCCCCceeEEecC--CCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCD--LCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd--~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
||.+.|++ -.||.|| .|..|-|+.|.= +.....++.......|+|..|-.
T Consensus 20 iC~~~~~~---g~MI~CD~~~C~~W~H~~CVg------i~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 20 VCGNSLET---DSMIQCEDPRCHVWQHVGCVI------LPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp SSCCCCCC---SCEEECSSTTTCCEEEHHHHS------CCCTTTCSCSCSCSSCCCHHHHH
T ss_pred ECCCcCCC---CCEEEECCccCCccccCEEEc------cccccccccccCCCCEECCCCCc
Confidence 78887422 3899999 999999999973 22111111124567899998853
No 6
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=94.38 E-value=0.043 Score=43.01 Aligned_cols=64 Identities=25% Similarity=0.653 Sum_probs=47.4
Q ss_pred ccccccC-CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCe-eEEcccCCCC
Q 014028 107 TCEICTH-RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEM-LFRCRACNRT 184 (432)
Q Consensus 107 ~C~IC~~-~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~-~f~C~~C~~~ 184 (432)
.|+.|-. .+-+|..|.|.+|++-+ ++-.-|.||.|..+-|+.|-- +.... ..++ ..+|..|-..
T Consensus 4 ~c~~c~~~~~w~C~~C~C~~C~~~~---~~~~ll~CD~C~~~yH~~Cl~--------Ppl~~---~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 4 SCKHCKDDVNRLCRVCACHLCGGRQ---DPDKQLMCDECDMAFHIYCLD--------PPLSS---VPSEDEWYCPECRND 69 (70)
T ss_dssp SCTTTTTCTTSCCTTTSBTTTCCCS---CGGGEEECTTTCCEEEGGGSS--------SCCSS---CCSSSCCCCTTTSCC
T ss_pred ccccccCCCCeECCCCCCcCCCCcC---CCCCEEEcCCCCCceecccCC--------CCcCC---CCCCCCcCCcCccCc
Confidence 3667765 56789999999999875 456789999999999999942 11111 1245 8999999754
No 7
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=93.64 E-value=0.032 Score=44.79 Aligned_cols=63 Identities=24% Similarity=0.613 Sum_probs=47.7
Q ss_pred ccccccC-CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCee-EEcccCCC
Q 014028 107 TCEICTH-RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEML-FRCRACNR 183 (432)
Q Consensus 107 ~C~IC~~-~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~-f~C~~C~~ 183 (432)
.|+.|-- .+-+|..|.|-+|.+-+ ++..-|.||.|..+-|+.|--- .... ..++. .+|..|-.
T Consensus 12 ~c~~c~~~~~W~C~~C~C~vC~~~~---d~~~ll~CD~C~~~yH~~Cl~P--------pL~~---~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 12 SCKHCKDDVNRLCRVCACHLCGGRQ---DPDKQLMCDECDMAFHIYCLDP--------PLSS---VPSEDEWYCPECRN 76 (77)
T ss_dssp SCTTTTTCTTSCCTTTSBTTTCCCS---CGGGEEECTTTCCEEETTTSSS--------CCSS---CCSSSCCCCTTTC-
T ss_pred cccccCCCCCCCCCCCcCCccCCCC---CCcceeEeCCCCCccCcccCCC--------cccC---CCCCCceECcCccc
Confidence 6888887 67899999999999876 5678999999999999999531 1111 12345 89998853
No 8
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=93.37 E-value=0.02 Score=45.32 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=33.4
Q ss_pred ccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 125 ICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
||.+-++ +.-.||.||.|..|-|..|.= +-... ......|+|..|-...
T Consensus 16 ~C~~~~d--~~~~MIqCd~C~~WfH~~Cvg------l~~~~----~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 16 LCRQPYN--VNHFMIECGLCQDWFHGSCVG------IEEEN----AVDIDIYHCPDCEAVF 64 (79)
T ss_dssp TTSCSCC--SSSCEEEBTTTCCEEEHHHHT------CCHHH----HTTCSBBCCTTTTTTS
T ss_pred EcCCccC--CCCceEEcCCCCCcEEeeecC------ccccc----ccCCCeEECCCccccc
Confidence 7888532 245899999999999999962 21100 0113589999998653
No 9
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.16 E-value=0.023 Score=44.32 Aligned_cols=46 Identities=28% Similarity=0.552 Sum_probs=31.7
Q ss_pred ccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
+|.+.++ ++-.||.||.|..|-|+.|.= +.. . ......|+|..|..
T Consensus 20 ~C~~~~~--~g~~mI~Cd~C~~W~H~~Cvg------~~~--~---~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 20 KCGTKDD--DGERMLACDGCGVWHHTRCIG------INN--A---DALPSKFLCFRCIE 65 (72)
T ss_dssp TTCCCSC--CSSCEEECSSSCEEEETTTTT------CCT--T---SCCCSCCCCHHHHH
T ss_pred eCCCccC--CCCcEEECCCCCCccCCeeec------cCc--c---ccCCCcEECCCccC
Confidence 5777532 345799999999999999973 211 0 12346899998853
No 10
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=93.05 E-value=0.011 Score=52.24 Aligned_cols=49 Identities=29% Similarity=0.633 Sum_probs=33.4
Q ss_pred ccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 125 ICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
+|++-++ ++-.||.||.|..|-|..|. |+... .......|+|..|...+
T Consensus 12 ~C~~~~~--~~~~mi~Cd~C~~WfH~~Cv------~~~~~----~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 12 ICKTPED--ESKFYIGCDRCQNWYHGRCV------GILQS----EAELIDEYVCPQCQSTE 60 (174)
T ss_dssp TTTEECC--TTSCEEECTTTCCEEEHHHH------TCCHH----HHTTCSSCCCHHHHHHH
T ss_pred eCCCCCC--CCCCEeECCCCCchhChhhc------CCchh----hccCccCeecCCCcchh
Confidence 7777432 23469999999999999997 33111 01234689999997654
No 11
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=92.72 E-value=0.045 Score=45.93 Aligned_cols=59 Identities=25% Similarity=0.522 Sum_probs=38.4
Q ss_pred Cccccccccc-cCCCCceeEEecC-CCcchhhhHhhhhcCCcccCCCCCCC-CCCCCeeEEcccCCCCchh
Q 014028 120 LCMCVICNKF-DFEVNTCRWIGCD-LCSHWTHTDCAIRDGQICMGPSAKSG-ACPSEMLFRCRACNRTSEL 187 (432)
Q Consensus 120 ~C~C~IC~kf-D~~~d~~~Wi~Cd-~Cgh~cHldCALr~~~~g~g~~~~g~-~~~lD~~f~C~~C~~~seL 187 (432)
.+-|.+|.+- +++ -.||.|| .|..|-|.+|. |+....... ....+..|+|..|-...+.
T Consensus 3 ~~~C~iC~~p~~~~---~~mi~Cdd~C~~WfH~~CV------glt~~~~~~i~~~~~~~~~Cp~C~~~~~~ 64 (105)
T 2xb1_A 3 VYPCGACRSEVNDD---QDAILCEASCQKWFHRECT------GMTESAYGLLTTEASAVWACDLCLKTKEG 64 (105)
T ss_dssp CCBCTTTCSBCCTT---SCEEECTTTTCCEEEGGGT------TCCHHHHHHHHHCTTEEECCHHHHHTTTT
T ss_pred cCCCCCCCCccCCC---CCEEEecCCcccccccccC------CcCHHHHHhhccCCCCCEECccccCcCCC
Confidence 4678999994 433 2499998 99999999995 331000000 0023589999999766543
No 12
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.67 E-value=0.048 Score=42.40 Aligned_cols=54 Identities=24% Similarity=0.602 Sum_probs=34.6
Q ss_pred Ccccccccc-ccCCCCceeEEecC-CCcchhhhHhhhhcCCcccCCCCCCC-CCCCCeeEEcccCC
Q 014028 120 LCMCVICNK-FDFEVNTCRWIGCD-LCSHWTHTDCAIRDGQICMGPSAKSG-ACPSEMLFRCRACN 182 (432)
Q Consensus 120 ~C~C~IC~k-fD~~~d~~~Wi~Cd-~Cgh~cHldCALr~~~~g~g~~~~g~-~~~lD~~f~C~~C~ 182 (432)
.+.|.+|.+ ++ +.-.||.|| .|..|-|..|. |+....... ....+..|+|..|-
T Consensus 8 ~~~C~~C~~p~~---~~~~mI~CD~~C~~WfH~~Cv------glt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 8 VYPCGICTNEVN---DDQDAILCEASCQKWFHRICT------GMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp -CBCTTTCSBCC---TTSCEEEBTTTTCCEEEHHHH------TCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCcCccCCCccC---CCCCeEecccCccccCchhcc------CCCHHHHHHhhccCCCcEECcCcc
Confidence 356889999 44 345899999 99999999994 331100000 00134689998873
No 13
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=91.99 E-value=0.034 Score=43.70 Aligned_cols=48 Identities=25% Similarity=0.626 Sum_probs=32.2
Q ss_pred cccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 124 VICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 124 ~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
|||.+-++ ++-.||.||.|.-|-|..|. |+... .......|+|..|..
T Consensus 13 CiC~~~~~--~~~~MI~Cd~C~~WfH~~Cv------g~~~~----~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 13 CVCRLPYD--VTRFMIECDACKDWFHGSCV------GVEEE----EAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTTEECC--TTSCEEECTTTCCEEEHHHH------TCCTT----TGGGBSSCCCHHHHH
T ss_pred EECCCcCC--CCCCEEEcCCCCCCEecccc------ccccc----ccCCCCEEECCCCcc
Confidence 47877432 24579999999999999997 33110 011225799999854
No 14
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=91.80 E-value=0.082 Score=41.66 Aligned_cols=44 Identities=30% Similarity=0.801 Sum_probs=31.2
Q ss_pred ccccccCCCCceeEEecCC--Cc-chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 125 ICNKFDFEVNTCRWIGCDL--CS-HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~--Cg-h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
||.+.++ + .+|.||. |. .|-|+.|.= +.. ...+.|+|..|-...
T Consensus 20 ~C~~~~~--g--~MI~CD~~~C~~~wfH~~Cvg------l~~-------~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 20 LCHQVSY--G--EMIGCDNPDCSIEWFHFACVG------LTT-------KPRGKWFCPRCSQES 66 (71)
T ss_dssp TTCCCSC--S--SEECCSCSSCSCCCEETTTTT------CSS-------CCSSCCCCTTTSSCS
T ss_pred ECCCCCC--C--CEeEeeCCCCCCccEecccCC------cCc-------CCCCCEECCCCCccc
Confidence 6788653 2 5999999 77 799999963 211 123679999996543
No 15
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.02 E-value=0.08 Score=41.43 Aligned_cols=50 Identities=24% Similarity=0.488 Sum_probs=31.7
Q ss_pred ccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
+|.+.++ +-.||.||.|..|-|..|. |+...........+..|+|..|-.
T Consensus 20 ~C~~~~~---~~~MI~Cd~C~~WfH~~Cv------gl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 20 ICRQPHN---NRFMICCDRCEEWFHGDCV------GISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCCC---SSCEEECSSSCCEEEHHHH------SCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ECCCccC---CCCEEEeCCCCCcEeCeEE------ccchhhhhhccCCCCeEECcCCcC
Confidence 7888653 3479999999999999997 221000000000246799988853
No 16
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=90.81 E-value=0.063 Score=44.47 Aligned_cols=41 Identities=20% Similarity=0.664 Sum_probs=29.9
Q ss_pred ccccccCCCCceeEEecCCCc---chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEccc-CC
Q 014028 125 ICNKFDFEVNTCRWIGCDLCS---HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA-CN 182 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cg---h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~-C~ 182 (432)
||.+.++ + .+|.||.|. .|-|+.|. |+.. ...+.|+|.. |-
T Consensus 30 iC~~~~~--g--~MI~CD~c~C~~eWfH~~CV------gl~~-------~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 30 FCRNVSY--G--PMVACDNPACPFEWFHYGCV------GLKQ-------APKGKWYCSKDCK 74 (90)
T ss_dssp TTTCCCS--S--SEECCCSSSCSCSCEETTTS------SCSS-------CTTSCCCSSHHHH
T ss_pred EeCCCCC--C--CEEEecCCCCccccCcCccC------CCCc-------CCCCCccCChhhc
Confidence 6787654 2 499999977 89999996 3311 1246899999 84
No 17
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=90.50 E-value=0.12 Score=42.61 Aligned_cols=45 Identities=29% Similarity=0.626 Sum_probs=30.9
Q ss_pred ccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
||.+-++ +-.||.||.|..|-|+.|. |+. ... ....|+|..|...
T Consensus 32 iC~~~~~---~~~mi~Cd~C~~w~H~~C~------~~~--~~~----~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 32 ICGFTHD---DGYMICCDKCSVWQHIDCM------GID--RQH----IPDTYLCERCQPR 76 (98)
T ss_dssp TTSCCSC---SSCEEEBTTTCBEEETTTT------TCC--TTS----CCSSBCCTTTSSS
T ss_pred ECCCccC---CCcEEEcCCCCCcCcCcCC------CCC--ccC----CCCCEECCCCcCC
Confidence 6766542 3469999999999999996 331 111 1126999999643
No 18
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=90.28 E-value=0.063 Score=41.51 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=30.4
Q ss_pred ccccccCCCCceeEEecCC--CcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 125 ICNKFDFEVNTCRWIGCDL--CSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~--Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
||.+.+++ -.+|.||. |..|-|+.|. |+..... ......-.|+|..|-
T Consensus 14 ~C~~~~~~---g~mI~CD~~~C~~W~H~~Cv------gi~~~~~-~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 14 ICSSTMVN---DSMIQCEDQRCQVWQHLNCV------LIPDKPG-ESAEVPPVFYCELCR 63 (68)
T ss_dssp TTCCCSCC---SCEEECSCTTTCEEEETTTS------CCCSSTT-SCCCCCSSCCCHHHH
T ss_pred ECCCCcCC---CCEEEECCCCCCCeEchhhC------CCCcccc-cccCCCCcEECcCcc
Confidence 67765432 26999995 9999999995 3311111 112233479999884
No 19
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=90.04 E-value=0.1 Score=43.29 Aligned_cols=44 Identities=30% Similarity=0.790 Sum_probs=31.5
Q ss_pred ccccccCCCCceeEEecCC--Cc-chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 125 ICNKFDFEVNTCRWIGCDL--CS-HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~--Cg-h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
||++.++ + .+|.||. |. .|-|+.|.= +.. ...+.|+|..|-...
T Consensus 40 iC~~~~~---g-~MI~CD~~dC~~~WfH~~CVg------l~~-------~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 40 LCHQVSY---G-EMIGCDNPDCSIEWFHFACVG------LTT-------KPRGKWFCPRCSQES 86 (91)
T ss_dssp TTCCBCC---S-CCCCCSCSSCSCCCCCSTTTT------CSS-------CCCSSCCCTTTCCCC
T ss_pred ECCCCCC---C-CEeEecCCCCCCCCEecccCC------cCc-------CCCCCEECcCccCcC
Confidence 7888653 2 5999999 76 899999963 211 123679999997643
No 20
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.68 E-value=0.16 Score=40.59 Aligned_cols=62 Identities=24% Similarity=0.633 Sum_probs=44.8
Q ss_pred ccccccC-CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCe-eEEcccCC
Q 014028 107 TCEICTH-RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEM-LFRCRACN 182 (432)
Q Consensus 107 ~C~IC~~-~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~-~f~C~~C~ 182 (432)
.|+-|-. .+-.|+.|.|.+|.+-+ ++-.-|.||.|..+-|+.|-- |.... ..++ ..+|..|-
T Consensus 12 ~c~~C~~~~~w~C~~c~C~vC~~~~---~~~~ll~CD~C~~~yH~~Cl~--------Ppl~~---~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 12 ECDLCGGDPEKKCHSCSCRVCGGKH---EPNMQLLCDECNVAYHIYCLN--------PPLDK---VPEEEYWYCPSCK 75 (77)
T ss_dssp CCTTTCSCSSSCCSSSSCSSSCCCC---CSTTEEECSSSCCEEETTSSS--------SCCSS---CCCSSCCCCTTTC
T ss_pred cChhhcCCCCeECCCCCCcCcCCcC---CCCCEEEcCCCCccccccccC--------CCccC---CCCCCCcCCcCcc
Confidence 3555553 55799999999999875 456789999999999999952 11111 1245 78999985
No 21
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=89.51 E-value=0.2 Score=41.91 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=40.6
Q ss_pred CcccCc-cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 116 GFCNLC-MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 116 gFC~~C-~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
-+|.+| .|-+|..-+. ++-.-|.||.|..+-|+.|--- .+ . ...++.++|..|..
T Consensus 56 W~C~~C~~C~vC~~~~~--~~~~ll~Cd~C~~~yH~~Cl~p-~l-------~---~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 56 WQCIECKTCSSCRDQGK--NADNMLFCDSCDRGFHMECCDP-PL-------T---RMPKGMWICQICRP 111 (112)
T ss_dssp CCCTTTCCBTTTCCCCC--TTCCCEECTTTCCEECGGGCSS-CC-------S---SCCSSCCCCTTTSC
T ss_pred cccccCCccccccCcCC--CccceEEcCCCCCeeecccCCC-CC-------C---CCCCCCeECCCCCC
Confidence 899999 8999997533 3446899999999999999421 11 1 12356899999964
No 22
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.98 E-value=0.26 Score=41.10 Aligned_cols=62 Identities=27% Similarity=0.532 Sum_probs=43.5
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCC--CCCCCeeEEcccCCCCchhh
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSG--ACPSEMLFRCRACNRTSELL 188 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~--~~~lD~~f~C~~C~~~seLl 188 (432)
||-||..|+ ...-+-|.+|+.++|..|-=|-++.+. ...... ...++....|.-|+.-+-||
T Consensus 17 ~C~VC~~~t----~~~l~pCRvC~RvfH~~CL~r~gy~~~-~~a~e~~l~A~T~~GWSC~~CenL~lLL 80 (89)
T 1wil_A 17 MCDVCEVWT----AESLFPCRVCTRVFHDGCLRRMGYIQG-DSAAEVTEMAHTETGWSCHYCDNINLLL 80 (89)
T ss_dssp CCTTTCCCC----SSCCSSCSSSSSCCCHHHHHHHTSCCC-CCCCSCSCCCSSSSSCCCTTTCCCCSSS
T ss_pred ccCcccccc----ccceeccccccccccHhhccccccccc-HHHHHHHHccCCCCCccccccchhhhhc
Confidence 778899884 223345789999999999888655443 111221 24678889999998877665
No 23
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=88.59 E-value=0.21 Score=47.59 Aligned_cols=66 Identities=24% Similarity=0.627 Sum_probs=44.1
Q ss_pred CCccccccCC-CCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCe-eEEcccCC
Q 014028 105 DCTCEICTHR-NGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEM-LFRCRACN 182 (432)
Q Consensus 105 dc~C~IC~~~-~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~-~f~C~~C~ 182 (432)
+-.|..|--. +-.|..|.|.+|.+-+ ++-.=|.||.|..+-|+.|-- |.... ...+ ..+|..|-
T Consensus 158 ~~~C~~c~~~~~w~C~~c~C~vC~~~~---~~~~lL~CD~C~~~yH~~CL~--------PPL~~---vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 158 GPSCKHCKDDVNRLCRVCACHLCGGRQ---DPDKQLMCDECDMAFHIYCLD--------PPLSS---VPSEDEWYCPECR 223 (226)
T ss_dssp SCCCTTTTTCTTSCCTTTSCSSSCCCC---C--CCEECSSSCCEECSCC----------CCCCS---CCSSSCCCCGGGC
T ss_pred CcccccccCCcCEecCCCCCcCCCCCC---CCCCeEEcCCCCcceeCccCC--------CCccc---CCCCCCCCCcCCc
Confidence 3457776543 4689999999999865 345668999999999999952 11111 1245 89999996
Q ss_pred CC
Q 014028 183 RT 184 (432)
Q Consensus 183 ~~ 184 (432)
..
T Consensus 224 ~~ 225 (226)
T 3ask_A 224 ND 225 (226)
T ss_dssp --
T ss_pred Cc
Confidence 53
No 24
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=88.44 E-value=0.092 Score=54.56 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=32.7
Q ss_pred cccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 124 VICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 124 ~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
|+|++-++ +.-.||.||.|.-|-|..|. |+.. ........|+|..|..
T Consensus 40 C~C~~~~d--~~~~MIqCd~C~~WfH~~Cv------gl~~----~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 40 CVCRQPYD--VNRFMIECDICKDWFHGSCV------GVEE----HHAVDIDLYHCPNCAV 87 (488)
T ss_dssp TTTTEECC--TTSCEEEBTTTCCEEEHHHH------TCCG----GGGGGEEEBCCHHHHH
T ss_pred EeCCCcCC--CCCCeEEccCCCCceeeeec------CcCc----ccccCCCEEECCCCcC
Confidence 48888432 13569999999999999998 3311 0012236899999963
No 25
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=88.37 E-value=0.11 Score=39.49 Aligned_cols=42 Identities=26% Similarity=0.784 Sum_probs=30.0
Q ss_pred ccccccCCCCceeEEecCC--Cc-chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDL--CS-HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~--Cg-h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
+|++.++ + .+|.||. |. .|-|+.|.= +.. ...+.|+|..|-+
T Consensus 13 ~C~~~~~---g-~mi~CD~~~C~~~wfH~~Cvg------l~~-------~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 13 LCHQVSY---G-EMIGCDNPDCPIEWFHFACVD------LTT-------KPKGKWFCPRCVQ 57 (59)
T ss_dssp TTTEECC---S-EEEECSCTTCSSCEEETGGGT------CSS-------CCSSCCCCHHHHC
T ss_pred ECCCCCC---C-CeeEeeCCCCCCCCEecccCC------ccc-------CCCCCEECcCccC
Confidence 7888653 3 5999999 77 799999963 211 1236799998854
No 26
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=88.17 E-value=0.14 Score=40.02 Aligned_cols=44 Identities=30% Similarity=0.624 Sum_probs=31.9
Q ss_pred ccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
||.+-++ +-.||.||.|..|-|+.|. |+... .....|+|..|.+
T Consensus 23 iC~~~~~---~~~MIqCd~C~~WfH~~Cv------gi~~~------~~~~~~~C~~C~~ 66 (68)
T 3o70_A 23 FCMKPFA---GRPMIECNECHTWIHLSCA------KIRKS------NVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCCT---TCCEEECTTTCCEEETTTT------TCCTT------SCCSSCCCHHHHT
T ss_pred ECCCcCC---CCCEEECCCCCcccccccc------CcCcc------cCCCcEECCCCCC
Confidence 7877543 6679999999999999997 33111 1235899998854
No 27
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=88.16 E-value=0.14 Score=37.54 Aligned_cols=44 Identities=30% Similarity=0.631 Sum_probs=31.2
Q ss_pred cccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 124 VICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 124 ~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
+||.+-++ +-.+|.||.|..|-|+.|.= +... .....|+|..|.
T Consensus 7 C~C~~~~~---~~~MI~Cd~C~~W~H~~Cvg------i~~~------~~~~~~~C~~C~ 50 (52)
T 3o7a_A 7 CFCMKPFA---GRPMIECNECHTWIHLSCAK------IRKS------NVPEVFVCQKCR 50 (52)
T ss_dssp STTCCBCT---TCCEEECTTTCCEEETTTTT------CCGG------GCCSSCCCHHHH
T ss_pred EEeCCcCC---CCCEEEcCCCCccccccccC------CCcc------cCCCcEECcCCC
Confidence 47877543 67899999999999999963 2110 123589998874
No 28
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.12 E-value=0.11 Score=40.87 Aligned_cols=42 Identities=26% Similarity=0.719 Sum_probs=30.1
Q ss_pred ccccccCCCCceeEEecCCCc---chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDLCS---HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~Cg---h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
+|.+.++ + .+|.||.|. .|-|++|.= +.. ...+.|+|..|-.
T Consensus 10 ~C~~~~~---g-~MI~CD~cdC~~~WfH~~Cvg------l~~-------~p~~~w~Cp~C~~ 54 (70)
T 1x4i_A 10 ICNQVSY---G-EMVGCDNQDCPIEWFHYGCVG------LTE-------APKGKWYCPQCTA 54 (70)
T ss_dssp TTSCCCC---S-SEECCSCTTCSCCCEEHHHHT------CSS-------CCSSCCCCHHHHH
T ss_pred EcCCCCC---C-CEeEeCCCCCCccCCcccccc------cCc-------CCCCCEECCCCCc
Confidence 5777653 3 799999974 899999963 211 1357899998854
No 29
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=87.51 E-value=0.32 Score=35.14 Aligned_cols=48 Identities=25% Similarity=0.522 Sum_probs=34.3
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
|.+|.+.+ ++-.-|.||.|..|-|+.|--- ++ . ...++.++|..|-..
T Consensus 3 C~vC~~~~---~~~~ll~Cd~C~~~~H~~Cl~p----~l----~---~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 3 CKVCRKKG---EDDKLILCDECNKAFHLFCLRP----AL----Y---EVPDGEWQCPACQPA 50 (51)
T ss_dssp CTTTCCSS---CCSCCEECTTTCCEECHHHHCT----TC----C---SCCSSCCSCTTTSCC
T ss_pred CCCCCCCC---CCCCEEECCCCChhhCcccCCC----Cc----C---CCCCCcEECcCcccc
Confidence 67787765 3457899999999999999631 11 1 123468999999764
No 30
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=86.84 E-value=0.21 Score=52.80 Aligned_cols=52 Identities=25% Similarity=0.489 Sum_probs=35.0
Q ss_pred ccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 121 C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
+|+--++.+ -.+...||+||.|.-|-|..|. |+.. ........|+|..|-..
T Consensus 43 ~s~kk~~~~--~n~~~~mI~CD~C~~WfH~~CV------gi~~----~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 43 MSKKKSHHH--KKNDFQWIGCDSCQTWYHFLCS------GLEQ----FEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp CSCCCTTTT--TTSTTSEEECTTTCCEEEGGGT------TCCG----GGTTTEEECCCTTTHHH
T ss_pred ccccccccC--CCcCCCEEECCCCCcCCCCcCC------CCCh----hHhcCCCeEECcCCcCC
Confidence 445445554 2255689999999999999994 3311 11234579999999753
No 31
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=86.79 E-value=0.16 Score=38.65 Aligned_cols=42 Identities=29% Similarity=0.811 Sum_probs=29.9
Q ss_pred ccccccCCCCceeEEecCC--Cc-chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDL--CS-HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~--Cg-h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
||++-++ + ..|.||. |. .|-|+.|.- +.. ...+.|+|..|-.
T Consensus 14 ~C~~~~~---g-~mi~CD~cdC~~~wfH~~Cvg------l~~-------~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 14 LCHQVSY---G-EMIGCDNPDCSIEWFHFACVG------LTT-------KPRGKWFCPRCSQ 58 (60)
T ss_dssp TTTEECC---S-EEEECSCTTCSSCEEETGGGT------CSS-------CCSSCCCCHHHHC
T ss_pred ECCCcCC---C-CEEEeCCCCCCCceEehhcCC------CCc-------CCCCCEECcCccC
Confidence 7888753 2 5999999 66 899999973 210 1236799998843
No 32
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=86.49 E-value=0.16 Score=38.94 Aligned_cols=42 Identities=29% Similarity=0.814 Sum_probs=30.1
Q ss_pred ccccccCCCCceeEEecCC--Cc-chhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 125 ICNKFDFEVNTCRWIGCDL--CS-HWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 125 IC~kfD~~~d~~~Wi~Cd~--Cg-h~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
+|++.++ + .+|.||. |. .|-|+.|.= +.. ...+.|+|..|-.
T Consensus 15 ~C~~~~~---g-~MI~CD~c~C~~~WfH~~Cvg------l~~-------~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 15 LCNQVSY---G-EMIGCDNEQCPIEWFHFSCVS------LTY-------KPKGKWYCPKCRG 59 (62)
T ss_dssp TTTEECC---S-EEEECSCTTCSSCEEETGGGT------CSS-------CCSSCCCCHHHHT
T ss_pred ECCCCCC---C-CeeeeeCCCCCcccEecccCC------cCc-------CCCCCEECcCccc
Confidence 7888653 3 6999999 55 999999963 211 1246899999854
No 33
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=84.43 E-value=0.13 Score=53.10 Aligned_cols=50 Identities=24% Similarity=0.533 Sum_probs=34.5
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
.|+|.+-++ ++-.||.||.|.-|-|..|. |+.. ........|+|..|-..
T Consensus 7 yCiC~~~~d--~~~~MIqCD~C~~WfH~~CV------gi~~----~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 7 YCLCRLPYD--VTRFMIECDMCQDWFHGSCV------GVEE----EKAADIDLYHCPNCEVL 56 (447)
T ss_dssp ETTTTEECC--TTSCEEECTTTCCEEEHHHH------TCCH----HHHTTEEECCCHHHHHH
T ss_pred EEeCCCcCC--CCCCeEEcCCCCcccccccC------CcCc----ccccCCCEEECCCCccc
Confidence 468888432 25679999999999999997 3311 00122368999999643
No 34
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.26 E-value=1.1 Score=34.68 Aligned_cols=45 Identities=22% Similarity=0.540 Sum_probs=29.9
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
.|.+|.+- -.-|.||.|..+-|+.|.- -.+ . ...++.++|..|-.
T Consensus 14 ~C~vC~~~------~~ll~Cd~C~~~~H~~Cl~-P~l-------~---~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGDG------TDVLRCTHCAAAFHWRCHF-PAG-------T---SRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSCC------TTCEECSSSCCEECHHHHC-TTT-------C---CCCSSSCCCTTTTT
T ss_pred CcCCCCCC------CeEEECCCCCCceecccCC-Ccc-------C---cCCCCCEECccccC
Confidence 45666532 1379999999999999952 111 1 12356799999964
No 35
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=75.09 E-value=0.93 Score=36.84 Aligned_cols=48 Identities=27% Similarity=0.515 Sum_probs=33.8
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
.|.||...+. .++-.-|.||.|..|-|+.|---. . -.++.++|..|-.
T Consensus 27 ~C~vC~~~~s-~~~~~ll~CD~C~~~fH~~Cl~p~--------~-----vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGES-QNSNVILFCDMCNLAVHQECYGVP--------Y-----IPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSS-CSEEEEEECSSSCCCCCHHHHTCS--------S-----CCSSCCCCHHHHH
T ss_pred cCCcCCCCCC-CCCCCEEECCCCCchhhcccCCCC--------c-----cCCCceECccccC
Confidence 4567776532 245688999999999999995321 1 2356899999943
No 36
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.45 E-value=1.4 Score=36.35 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=39.3
Q ss_pred CCcccCc-cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 115 NGFCNLC-MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 115 ~gFC~~C-~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
+-||.+| .|.+|.+.+++ -.-|.||.|..+-|+.|---. + .. ..++.++|..|-.
T Consensus 48 ~W~C~~C~~C~~C~~~~~~---~~ll~Cd~C~~~yH~~Cl~pp-l-------~~---~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 48 GWQCPECKVCQNCKQSGED---SKMLVCDTCDKGYHTFCLQPV-M-------KS---VPTNGWKCKNCRI 103 (111)
T ss_dssp TCCCTTTCCCTTTCCCSCC---TTEEECSSSCCEEEGGGSSSC-C-------SS---CCSSCCCCHHHHC
T ss_pred CccCCcCCcccccCccCCC---CCeeECCCCCcHHhHHhcCCc-c-------cc---CCCCCcCCcCCcC
Confidence 4899999 69999997543 358999999999999996321 1 11 1235788887743
No 37
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=73.27 E-value=1 Score=37.74 Aligned_cols=52 Identities=27% Similarity=0.584 Sum_probs=37.9
Q ss_pred CcccCc-cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccC
Q 014028 116 GFCNLC-MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRAC 181 (432)
Q Consensus 116 gFC~~C-~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C 181 (432)
-+|..| .|-+|.+-+ ++-.-|.||.|..+-|+.|.-- .+ . ...++.++|..|
T Consensus 53 W~C~~C~~C~~C~~~~---~~~~ll~Cd~C~~~yH~~Cl~p-pl-------~---~~P~g~W~C~~C 105 (114)
T 2kwj_A 53 WQCIECKSCILCGTSE---NDDQLLFCDDCDRGYHMYCLNP-PV-------A---EPPEGSWSCHLC 105 (114)
T ss_dssp CCCGGGCCCTTTTCCT---TTTTEEECSSSCCEEETTTSSS-CC-------S---SCCSSCCCCHHH
T ss_pred cCccccCccCcccccC---CCCceEEcCCCCccccccccCC-Cc-------c---CCCCCCeECccc
Confidence 678888 799999865 3346799999999999999531 11 1 123467889888
No 38
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=72.26 E-value=1 Score=36.73 Aligned_cols=17 Identities=29% Similarity=1.099 Sum_probs=15.1
Q ss_pred eEEecCCCcchhhhHhh
Q 014028 137 RWIGCDLCSHWTHTDCA 153 (432)
Q Consensus 137 ~Wi~Cd~Cgh~cHldCA 153 (432)
+.|.||.|+.|.|-.|-
T Consensus 1 ~mi~c~~c~~w~H~~c~ 17 (140)
T 2ku7_A 1 SMMQCGKCDRWVHSKCE 17 (140)
T ss_dssp CCCCCSCCSSCHHHHHC
T ss_pred CccccccCCCccCCccc
Confidence 46899999999999993
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.80 E-value=1.4 Score=34.63 Aligned_cols=48 Identities=27% Similarity=0.530 Sum_probs=33.3
Q ss_pred ccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 121 C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
-.|.||.+.+.. ++-.-|.||.|..|-|+.|---. . -.++.++|..|-
T Consensus 17 ~~C~vC~~~~s~-~~~~ll~CD~C~~~~H~~Cl~~~--------~-----vP~g~W~C~~C~ 64 (71)
T 2ku3_A 17 AVCSICMDGESQ-NSNVILFCDMCNLAVHQECYGVP--------Y-----IPEGQWLCRHCL 64 (71)
T ss_dssp CSCSSSCCCCCC-SSSCEEECSSSCCEEEHHHHTCS--------S-----CCSSCCCCHHHH
T ss_pred CCCCCCCCCCCC-CCCCEEECCCCCCccccccCCCC--------c-----CCCCCcCCccCc
Confidence 346788776422 34467999999999999995311 1 235789999884
No 40
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=66.51 E-value=2.2 Score=35.21 Aligned_cols=44 Identities=16% Similarity=0.365 Sum_probs=28.4
Q ss_pred CceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 134 NTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 134 d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
.+..++.|++|..|-|..|.=-. ..++ . ...+...|.|+.|-..
T Consensus 71 ~~~~m~~C~~C~~~~H~~C~~~~-~~~~----~--~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 71 FEKKLMECCICNEIVHPGCLQMD-GEGL----L--NEELPNCWECPKCYQE 114 (117)
T ss_dssp GGGSCEEETTTCCEECGGGCCSC-CCCE----E--CSSSSSEEECTTTC--
T ss_pred cCcceEEeeecCCeEECCCCCCC-cccc----c--cccCCCCeECCCCcCC
Confidence 45669999999999999996321 1111 0 1234556999999643
No 41
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=66.43 E-value=2.5 Score=33.09 Aligned_cols=32 Identities=25% Similarity=0.669 Sum_probs=25.3
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAI 154 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCAL 154 (432)
.|.||..|.-.| .-.++.|..|+..||-.|+-
T Consensus 34 ~pt~C~~C~~~l---------~~qG~kC~~C~~~cHkkC~~ 65 (72)
T 2fnf_X 34 GPGWCDLCGREV---------LRQALRCANCKFTCHSECRS 65 (72)
T ss_dssp SCCBCTTTSSBC---------SSCCEECTTSSCEECTGGGG
T ss_pred CCcchhhhhHHH---------HhCcCccCCCCCeechhhhc
Confidence 467887777666 24578999999999999974
No 42
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=64.53 E-value=12 Score=28.09 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=41.9
Q ss_pred HHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014028 334 MERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALA 380 (432)
Q Consensus 334 ~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~a 380 (432)
-.|++|++.+++||.=|.-=..+-.--+.....-+.|...|+.+++|
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999999999888888888899999999999999998876
No 43
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=63.42 E-value=2.7 Score=37.44 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhh
Q 014028 342 QIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTD 383 (432)
Q Consensus 342 ~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~e 383 (432)
.++++..=|+|=-.-|..|-..-.+-.+-|..|+.+...+.+
T Consensus 139 s~~ef~~Dv~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~ 180 (184)
T 3o36_A 139 KPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLK 180 (184)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777877766777777777766655433
No 44
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=61.56 E-value=3.9 Score=37.21 Aligned_cols=39 Identities=15% Similarity=0.380 Sum_probs=28.4
Q ss_pred eeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 136 CRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 136 ~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
-..|.||.|..|-|+.|-.- ... ...++.++|..|-...
T Consensus 17 g~ll~Cd~C~~~~H~~Cl~p--------~l~---~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 17 GDLLCCEKCPKVFHLTCHVP--------TLL---SFPSGDWICTFCRDIG 55 (207)
T ss_dssp EEEEECSSSSCEECTTTSSS--------CCS---SCCSSCCCCTTTSCSS
T ss_pred CceEEcCCCCCccCCccCCC--------CCC---CCCCCCEEeCceeCcc
Confidence 35999999999999999531 111 1246679999998654
No 45
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=59.17 E-value=4.7 Score=30.37 Aligned_cols=44 Identities=27% Similarity=0.561 Sum_probs=30.5
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
|.+|.+. -.-|.||.|..|-|+.|---.. . ...++.++|..|-+
T Consensus 14 C~vC~~~------g~ll~CD~C~~~fH~~Cl~p~l--------~---~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 14 CEVCQQG------GEIILCDTCPRAYHMVCLDPDM--------E---KAPEGKWSCPHCEK 57 (61)
T ss_dssp CTTTSCC------SSEEECSSSSCEEEHHHHCTTC--------C---SCCCSSCCCTTGGG
T ss_pred CccCCCC------CcEEECCCCChhhhhhccCCCC--------C---CCCCCceECccccc
Confidence 4556553 2689999999999999964211 0 12356899999964
No 46
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=56.77 E-value=3.9 Score=30.62 Aligned_cols=32 Identities=25% Similarity=0.669 Sum_probs=24.9
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAI 154 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCAL 154 (432)
.|.||.-|.-.| .-.++.|..|+..+|-.|.-
T Consensus 21 ~pt~C~~C~~~i---------~kqg~kC~~C~~~cH~kC~~ 52 (59)
T 1rfh_A 21 GPGWCDLCGREV---------LRQALRCANCKFTCHSECRS 52 (59)
T ss_dssp CCEECTTTCSEE---------CSCCEECTTTSCEECHHHHT
T ss_pred CCeEchhcchhh---------hhCccEeCCCCCeEehhhhh
Confidence 467887776666 23568999999999999974
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=53.66 E-value=4.3 Score=28.27 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=21.7
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||.. |..+.++...+ .|||.-|.+|..+-.
T Consensus 7 ~C~IC~~~~~~~~~~~~~~---~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 7 GCPICLEDIHTSRVVAHVL---PCGHLLHRTCYEEML 40 (55)
T ss_dssp SCTTTCCCCCTTTSCEEEC---TTSCEEETTHHHHHH
T ss_pred cCcccChhhcCCCcCeEec---CCCCcccHHHHHHHH
Confidence 4778877 44433333333 589999999987543
No 48
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=53.36 E-value=4.3 Score=30.22 Aligned_cols=44 Identities=30% Similarity=0.680 Sum_probs=30.1
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
.|.+|.+. -..|.||.|..|-|+.|---. ... ...+.++|..|-
T Consensus 7 ~C~vC~~~------g~ll~Cd~C~~~fH~~Cl~pp--------l~~---~p~g~W~C~~C~ 50 (60)
T 2puy_A 7 FCSVCRKS------GQLLMCDTCSRVYHLDCLDPP--------LKT---IPKGMWICPRCQ 50 (60)
T ss_dssp SCTTTCCC------SSCEECSSSSCEECGGGSSSC--------CSS---CCCSCCCCHHHH
T ss_pred CCcCCCCC------CcEEEcCCCCcCEECCcCCCC--------cCC---CCCCceEChhcc
Confidence 35666664 268999999999999996421 111 124579999883
No 49
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.76 E-value=14 Score=27.92 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014028 333 QMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALA 380 (432)
Q Consensus 333 ~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~a 380 (432)
.-.|++|++.+++||.=|.--+++-.-.+...+.-+.|...|+.++++
T Consensus 14 ~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 14 SKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999998999888899999999999988887754
No 50
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=52.31 E-value=5.1 Score=30.03 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=33.8
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
.|.+|..-+.. ++-.-|.||.|..+-|+.|-.-... ...+..++.++|..|-.
T Consensus 8 ~C~vC~~~~~~-~~~~ll~Cd~C~~~~H~~C~~p~l~--------~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 8 VCTICQEEYSE-APNEMVICDKCGQGYHQLCHTPHID--------SSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CBSSSCCCCCB-TTBCEEECSSSCCEEETTTSSSCCC--------HHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCC-CCCCEEECCCCChHHHhhhCCCccc--------ccccCCCCCEECCCCcC
Confidence 46788774322 4457899999999999999532100 00011457899998843
No 51
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.81 E-value=3.9 Score=30.15 Aligned_cols=43 Identities=30% Similarity=0.683 Sum_probs=29.1
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
|.+|.+. -..|.||.|..|-|+.|.--. ... ...+.++|..|-
T Consensus 12 C~vC~~~------g~ll~Cd~C~~~~H~~Cl~pp--------l~~---~p~g~W~C~~C~ 54 (56)
T 2yql_A 12 CSVCRKS------GQLLMCDTCSRVYHLDCLDPP--------LKT---IPKGMWICPRCQ 54 (56)
T ss_dssp CSSSCCS------SCCEECSSSSCEECSSSSSSC--------CCS---CCCSSCCCHHHH
T ss_pred CccCCCC------CeEEEcCCCCcceECccCCCC--------cCC---CCCCceEChhhh
Confidence 5666654 268999999999999996421 111 124578888874
No 52
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.58 E-value=3.5 Score=33.61 Aligned_cols=47 Identities=23% Similarity=0.565 Sum_probs=33.2
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~ 182 (432)
.|.||.+-+ ++-.-|.||.|..|-|+.|--- ... ...++.++|..|-
T Consensus 18 ~C~vC~~~~---~~~~ll~CD~C~~~~H~~Cl~P--------pl~---~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 18 ICQVCSRGD---EDDKLLFCDGCDDNYHIFCLLP--------PLP---EIPRGIWRCPKCI 64 (92)
T ss_dssp CCSSSCCSG---GGGGCEECTTTCCEECSSSSSS--------CCS---SCCSSCCCCHHHH
T ss_pred CCccCCCcC---CCCCEEEcCCCCchhccccCCC--------Ccc---cCCCCCcCCccCc
Confidence 467888765 3568999999999999999621 111 1134679999884
No 53
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=47.90 E-value=11 Score=31.60 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=23.1
Q ss_pred CcccCccccccccccCCCCceeEEecCCCcchhhhH--hhhh
Q 014028 116 GFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTD--CAIR 155 (432)
Q Consensus 116 gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHld--CALr 155 (432)
.||..|.=.+=-+-|.. +..+-..|..|++.-.++ |..+
T Consensus 5 ~FCp~Cgn~L~~~~~~~-~~~~~~~C~~C~y~~~~~~~~v~~ 45 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKV-DRVLRLACRNCDYSEIAATSKVYR 45 (113)
T ss_dssp CCCSSSCCCCEECCCTT-TCCCCEECSSSCCEECCSCSEEEE
T ss_pred eeCcCCCCEeeEcccCC-CCeeEEECCCCCCeEEcCCCeEEE
Confidence 57766665554444332 334555799999876664 5443
No 54
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=47.23 E-value=11 Score=27.98 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=33.3
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCchh
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSEL 187 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~seL 187 (432)
.|.||...- .+|.. + .|||.-|.+|..+....+.. .....+.|.-|......
T Consensus 14 ~C~IC~~~~--~~p~~-l---~CgH~fC~~Ci~~~~~~~~~--------~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 14 TCPICLELL--TEPLS-L---DCGHSLCRACITVSNKEAVT--------SMGGKSSCPVCGISYSF 65 (79)
T ss_dssp EETTTTEEC--SSCCC-C---SSSCCCCHHHHSCCCCCCSS--------SCCCCCCCSSSCCCCCS
T ss_pred CCcCCCccc--CCeeE-C---CCCCHHHHHHHHHHHHhccc--------CCCCCCcCCCCCCcCCH
Confidence 577887631 13332 2 69999999999876554321 11346789999987643
No 55
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=45.99 E-value=45 Score=25.27 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=37.6
Q ss_pred HHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 014028 334 MERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALA 380 (432)
Q Consensus 334 ~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~a 380 (432)
-.|++|++.+++||.=|.-=+.+-.-.+...+.-+.|...|+.+..+
T Consensus 16 rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999888777777777777788888888888877654
No 56
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=42.17 E-value=6.9 Score=29.75 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=25.6
Q ss_pred eEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 137 RWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 137 ~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
..|.||.|..|-|+.|--- .... ..++.++|..|-.
T Consensus 19 ~ll~CD~C~~~fH~~Cl~p--------pl~~---~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 19 ELICCDGCPRAFHLACLSP--------PLRE---IPSGTWRCSSCLQ 54 (66)
T ss_dssp SCEECSSCCCEECTTTSSS--------CCSS---CCSSCCCCHHHHH
T ss_pred CEEEcCCCChhhcccccCC--------CcCc---CCCCCeECccccC
Confidence 5899999999999999531 1111 1346899998853
No 57
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.28 E-value=9.7 Score=30.66 Aligned_cols=54 Identities=22% Similarity=0.679 Sum_probs=34.4
Q ss_pred ccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCC-CCCCCeeEEcccCCC
Q 014028 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSG-ACPSEMLFRCRACNR 183 (432)
Q Consensus 121 C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~-~~~lD~~f~C~~C~~ 183 (432)
..|.+|...+.. ++-.-|.||.|...-|+.|-- +..... ....++.++|..|-.
T Consensus 17 ~~C~vC~~~~~~-~~~~ll~CD~C~~~yH~~Cl~--------Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 17 LACVVCRQMTVA-SGNQLVECQECHNLYHQDCHK--------PQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CSCSSSCCCCCC-TTCCEEECSSSCCEEETTTSS--------SCCCHHHHHCTTCCCCCHHHHH
T ss_pred CcCCCCCCCCCC-CCCceEECCCCCCeEcCccCC--------CcccccccCCCCCCeeCccccc
Confidence 456888886442 223589999999999999932 111000 002467899999843
No 58
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=41.28 E-value=8.4 Score=26.78 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=20.9
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||.. |+.+.. .+.-..|||.-|.+|..+-.
T Consensus 7 ~C~IC~~~~~~~~~---~~~~~~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 7 ECAVCLAELEDGEE---ARFLPRCGHGFHAECVDMWL 40 (55)
T ss_dssp CCTTTCCCCCTTSC---CEECSSSCCEECTTHHHHTT
T ss_pred cCccCCccccCCCc---eEECCCCCCcccHHHHHHHH
Confidence 4678876 333222 22333699999999987543
No 59
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=40.49 E-value=17 Score=29.32 Aligned_cols=37 Identities=24% Similarity=0.496 Sum_probs=25.2
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMG 162 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g 162 (432)
.|-+|.+.- +++ .-.|..|...-|+.||+....-|-|
T Consensus 49 ~C~~C~~~~---~~~-~Y~C~~C~f~lH~~Ca~~p~~~~~~ 85 (89)
T 1v5n_A 49 TCDKCEEEG---TIW-SYHCDECDFDLHAKCALNEDTKESG 85 (89)
T ss_dssp CCTTTSCCC---CSC-EEECTTTCCCCCHHHHHCSSCSSCC
T ss_pred EeCCCCCcC---CCc-EEEcCCCCCeEcHHhcCCCCccccC
Confidence 455566531 222 2579999999999999977665444
No 60
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=40.06 E-value=13 Score=26.11 Aligned_cols=35 Identities=20% Similarity=0.590 Sum_probs=23.2
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAI 154 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCAL 154 (432)
.|.||.-|.=.| .-. ....+.|..|+..+|-.|+-
T Consensus 10 ~pt~C~~C~~~l-----~g~-~~qg~~C~~C~~~~H~~C~~ 44 (50)
T 1ptq_A 10 SPTFCDHCGSLL-----WGL-VKQGLKCEDCGMNVHHKCRE 44 (50)
T ss_dssp SCCBCTTTCCBC-----CSS-SSCEEEETTTCCEECHHHHT
T ss_pred CCCCcCCCCcee-----ecc-CCccCEeCCCCCeECHHHhh
Confidence 467775554333 110 22567899999999999975
No 61
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=39.98 E-value=10 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=31.1
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
.|.+|... -.-|.||.|..+-|+.|--- ... ...++.++|..|-..
T Consensus 11 ~C~vC~~~------g~ll~Cd~C~~~fH~~Cl~p--------pl~---~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 11 FCRVCKDG------GELLCCDTCPSSYHIHCLNP--------PLP---EIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCTTTCCC------SSCBCCSSSCCCBCSSSSSS--------CCS---SCCSSCCCCTTTTTT
T ss_pred cCCCCCCC------CCEEEcCCCCHHHcccccCC--------CcC---cCCCCccCChhhcCc
Confidence 35566643 25799999999999999532 111 123568999999654
No 62
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=39.61 E-value=63 Score=24.07 Aligned_cols=65 Identities=12% Similarity=0.184 Sum_probs=41.9
Q ss_pred hhhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCch-hhHHHHHHHHHHHHHhCCCChhHHHHHH
Q 014028 186 ELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPR-GRKLYWKCEELLEKMKGGLPESMACRGI 253 (432)
Q Consensus 186 eLlg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~r-gK~L~~~~e~al~KLk~g~~~~~~~~~i 253 (432)
.+++|+.+++ +.....+.+...|+-+-..|-++-... -..+..+...++..|.++++|.++|..|
T Consensus 10 ~~v~~i~~~l---~~~~t~~~I~~~l~~~C~~lp~~~~~~C~~~v~~y~~~ii~~l~~~~~P~~iC~~l 75 (80)
T 3bqp_A 10 KLVGYLDRNL---EKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCLKI 75 (80)
T ss_dssp HHHHHHHHHS---CTTCCHHHHHHHHHHHGGGSCGGGHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHT
T ss_pred HHHHHHHHHH---HcccHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHCCCHHHHHhhc
Confidence 3456777766 345567778888876666665421111 1244555667888888899999998754
No 63
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=39.00 E-value=9.4 Score=40.02 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=0.0
Q ss_pred eEEecCCCcchhhhHhhhh
Q 014028 137 RWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 137 ~Wi~Cd~Cgh~cHldCALr 155 (432)
-++.|..|+..||-.|.-+
T Consensus 64 qg~~C~~C~~~~H~~C~~~ 82 (674)
T 3pfq_A 64 QGFQCQVCSFVVHKRCHEF 82 (674)
T ss_dssp -------------------
T ss_pred ceeECCCCCCCcChhhcCc
Confidence 4577888998888888644
No 64
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.05 E-value=7.1 Score=28.09 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=21.8
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhc
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRD 156 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~ 156 (432)
.|.||.. |.....+-..+.--.|||.-|.+|..+-
T Consensus 17 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 52 (69)
T 2ea6_A 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 52 (69)
T ss_dssp CCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHH
T ss_pred CCcccCccccccccccCCeEeCCCCChhcHHHHHHH
Confidence 4677777 3332222223334579999999998764
No 65
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=37.85 E-value=64 Score=24.53 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 014028 334 MERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIAL 379 (432)
Q Consensus 334 ~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~ 379 (432)
..|++|++.+++||.=|.-=+.+-.....+++.-+.|...|+.++.
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568889999999998888888888888888999999988887763
No 66
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=37.26 E-value=16 Score=27.43 Aligned_cols=36 Identities=19% Similarity=0.524 Sum_probs=23.5
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
.|.|| -.|.++-.-. ....+.|..|+..+|-.|+-+
T Consensus 19 ~pt~C-----~~C~~~l~Gl-~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 19 SPTFC-----DHCGSLLWGL-VKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp SCCBC-----TTTCCBCCSS-SSCEEEETTTCCEECHHHHTT
T ss_pred CCCcc-----cccChhhhcc-CceeeECCCCCCeEchhHhhh
Confidence 35666 4555542111 224578999999999999864
No 67
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.46 E-value=15 Score=27.70 Aligned_cols=51 Identities=22% Similarity=0.395 Sum_probs=31.5
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCchh
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSEL 187 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~seL 187 (432)
.|.||.. |++.......+ .|||+-|.+|..+-...+ ...+.|.-|.+....
T Consensus 17 ~C~IC~~~~~~~~~~~~~~---~CgH~fC~~Ci~~~~~~~------------~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 17 ECPICMESFTEEQLRPKLL---HCGHTICRQCLEKLLASS------------INGVRCPFCSKITRI 68 (88)
T ss_dssp BCTTTCCBCCTTSSCEEEC---SSSCEEEHHHHHHHHHHC------------SSCBCCTTTCCCBCC
T ss_pred CCccCCccccccCCCeEEC---CCCChhhHHHHHHHHHcC------------CCCcCCCCCCCcccc
Confidence 4778877 33322212222 699999999987654321 124679999887543
No 68
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=35.45 E-value=15 Score=28.63 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=23.1
Q ss_pred CCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCchh
Q 014028 143 LCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSEL 187 (432)
Q Consensus 143 ~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~seL 187 (432)
.|||.-+..|..+... ++.+.|..|.++..-
T Consensus 32 ~CGH~fC~~Cl~~~~~--------------~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT--------------DENGLCPACRKPYPE 62 (78)
T ss_dssp TTSCCCCHHHHHHHTT--------------SSCSBCTTTCCBCSS
T ss_pred CCCCCcCHHHHHHHHh--------------cCCCCCCCCCCccCC
Confidence 6999999999875532 134789999987654
No 69
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=34.32 E-value=15 Score=28.64 Aligned_cols=36 Identities=19% Similarity=0.511 Sum_probs=24.1
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
.|.||.-|.-.|=.- ...++.|..|+..+|-.|.-+
T Consensus 33 ~pt~C~~C~~~lwGl------~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGL------NKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCT------TCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccc------cccccCcCCCCCcCCHhHHhh
Confidence 457775554333211 225689999999999999764
No 70
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=34.01 E-value=16 Score=29.24 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=24.5
Q ss_pred CceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCC
Q 014028 134 NTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRT 184 (432)
Q Consensus 134 d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~ 184 (432)
++...+.--.|||+-|.+|-.+-...+. ....+.|.-|...
T Consensus 51 ~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~----------~~~~~~CP~CR~~ 91 (114)
T 1v87_A 51 GPMVVGRLTKCSHAFHLLCLLAMYCNGN----------KDGSLQCPSCKTI 91 (114)
T ss_dssp CSSCCEEESSSCCEECHHHHHHHHHHTC----------CSSCCBCTTTCCB
T ss_pred CcccceecCCCCCcccHHHHHHHHHccc----------CCCCCcCCCCCCc
Confidence 3444444557999999999875432111 1234567777654
No 71
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=34.01 E-value=98 Score=23.78 Aligned_cols=64 Identities=9% Similarity=0.101 Sum_probs=44.0
Q ss_pred hhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCchhhHHHHHHHHHHHHHhCCCChhHHHHHH
Q 014028 187 LLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGI 253 (432)
Q Consensus 187 Llg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~rgK~L~~~~e~al~KLk~g~~~~~~~~~i 253 (432)
+++.+++++ ......+.+.+-|+-+-..|-.-...=-+.+..+...++..|.++.+|.++|..|
T Consensus 10 iv~~ve~~l---~~~~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l 73 (78)
T 1nkl_A 10 IIQKLEDMV---GPQPNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKKPQAICVDI 73 (78)
T ss_dssp HHHHHHHHH---CSSCCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHH---HcCCcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHhcc
Confidence 344444444 5667788999999988888743111112456667777888899999999999865
No 72
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=33.98 E-value=3.8e+02 Score=26.99 Aligned_cols=31 Identities=10% Similarity=-0.032 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHhCCC---ChhHHHHHHHHH
Q 014028 226 GRKLYWKCEELLEKMKGGL---PESMACRGILLF 256 (432)
Q Consensus 226 gK~L~~~~e~al~KLk~g~---~~~~~~~~il~f 256 (432)
+|.|...+.....++..+. .+..+|..|+.-
T Consensus 56 Ak~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e 89 (486)
T 3haj_A 56 AQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSE 89 (486)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHH
Confidence 5667777766666666553 344556555543
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.73 E-value=2.3e+02 Score=28.46 Aligned_cols=128 Identities=17% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhhhhhhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhhhhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHH
Q 014028 280 HEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADM 359 (432)
Q Consensus 280 ~~~~~~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~M 359 (432)
++..+.+...++.........-.....+-.......+......++-.+....+.-..++-+.....+|+-...-+.+.+-
T Consensus 455 ~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Q ss_pred HhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhhhcHHHHHHHHHHHHHH
Q 014028 360 FQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIK 413 (432)
Q Consensus 360 fQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~l~Eaee~r~~~~eelk 413 (432)
.+...+..++|.+.+++......++++| +|..++.+.++-+++.++++
T Consensus 535 ~~~~~~~~~~~~~~le~~~~~~~~~~~~------l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 535 KQKETEDLEQENIALEKQLDNKRAKQAE------LRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHTTC
T ss_pred hhcchhhHHhhhHHHHHHHhhhhhHHHH------HHHHHHHHHHHHHHHHHHhc
No 74
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.63 E-value=40 Score=26.65 Aligned_cols=38 Identities=24% Similarity=0.566 Sum_probs=25.6
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||..|.-.|=.- ...++.|..|+..+|-.|+-+-.
T Consensus 27 ~pt~C~~C~~~l~Gl------~kqG~~C~~C~~~~Hk~C~~~v~ 64 (85)
T 2eli_A 27 SPTFCDHCGSLLYGL------IHQGMKCDTCDMNVHKQCVINVP 64 (85)
T ss_dssp SCCBCSSSCCBCCCS------SSCEEECSSSCCEEETTTTTTSC
T ss_pred CCcCCcccCcccccc------ccCCCcCCCcCCccCHhHHhhcC
Confidence 457776554444111 22567899999999999987643
No 75
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=33.23 E-value=15 Score=27.56 Aligned_cols=36 Identities=22% Similarity=0.623 Sum_probs=23.6
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
.|.||.-|.-.|=. . .--.+.|..|+..+|-.|+-+
T Consensus 22 ~pt~C~~C~~~l~G---l---~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 22 SPTFCEHCGTLLWG---L---ARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp SCCBCSSSCCBCCC---S---SSCSEEESSSCCEECTTTTTT
T ss_pred CCcCchhcChhhee---c---CCcccccCCCCCccCHhHHhh
Confidence 45777555444311 1 124578999999999999754
No 76
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=32.84 E-value=16 Score=26.52 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=20.1
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||.. |+...+ .. .-.|||.-|.+|..+-.
T Consensus 16 ~C~IC~~~~~~~~~-~~---~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 16 KCTICLSILEEGED-VR---RLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp SBTTTTBCCCSSSC-EE---ECTTSCEEEHHHHHHHH
T ss_pred CCeeCCccccCCCc-EE---EeCCCCHHHHHHHHHHH
Confidence 4678876 332222 22 22599999999987543
No 77
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=32.78 E-value=16 Score=27.57 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=24.6
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIR 155 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr 155 (432)
.|.||.-|.-.|=. + ...++.|..|+..+|-.|+-+
T Consensus 23 ~pt~C~~C~~~l~G-l-----~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 23 TPTYCYECEGLLWG-I-----ARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp SCCCCTTTCCCCCS-S-----CCEEEEETTTCCEECTTHHHH
T ss_pred CCcChhhcChhhcc-c-----CcceeEcCCCCCeeCHHHHhh
Confidence 46777655444411 0 235688999999999999865
No 78
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=32.40 E-value=94 Score=24.21 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=40.9
Q ss_pred hhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccC--CCchhhHHHHHHHHHHHHHhCCCChhHHHHHH
Q 014028 187 LLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGS--EDPRGRKLYWKCEELLEKMKGGLPESMACRGI 253 (432)
Q Consensus 187 Llg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGS--ed~rgK~L~~~~e~al~KLk~g~~~~~~~~~i 253 (432)
++.|+.+++. .....+.+..-|+=+-..|-+. .+- -..+..+...++..|.++.+|.++|..|
T Consensus 14 vv~~i~~~l~---~n~t~~~I~~~l~~~C~~lp~~~~~~C-~~~V~~y~~~ii~~l~~~~~P~~iC~~l 78 (91)
T 2qyp_A 14 LVKEVTKLID---NNKTEKEILDAFDKMCSKLPKSLSEEC-QEVVDTYGSSILSILLEEVSPELVCSML 78 (91)
T ss_dssp HHHHHHHHHT---SHHHHHHHHHHHHHHHHTSCSSTTTTH-HHHHHHHHHHHHHHHHHTCCHHHHHHTT
T ss_pred HHHHHHHHHh---cCCcHHHHHHHHHHHHHHCCCCcccch-HHHHHHHHHHHHHHHHHcCCHHHHHhhc
Confidence 4567777663 3345677777777666666542 222 2355666777788888889999988754
No 79
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.20 E-value=20 Score=26.38 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=20.3
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||...-.+......+ .|||.-|.+|..+-.
T Consensus 17 ~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 17 LCAVCLEDFKPRDELGIC---PCKHAFHRKCLIKWL 49 (74)
T ss_dssp BCSSSCCBCCSSSCEEEE---TTTEEEEHHHHHHHH
T ss_pred CCcCCCcccCCCCcEEEc---CCCCEecHHHHHHHH
Confidence 467887742222222222 499999999987643
No 80
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=31.60 E-value=20 Score=29.69 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=24.3
Q ss_pred ccccccccc-CC--CCceeEEecCCCcchhhhHhh
Q 014028 122 MCVICNKFD-FE--VNTCRWIGCDLCSHWTHTDCA 153 (432)
Q Consensus 122 ~C~IC~kfD-~~--~d~~~Wi~Cd~Cgh~cHldCA 153 (432)
.|-+|.+.+ .| .++-..|.|+.|+.+-|+.|.
T Consensus 7 ~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl 41 (112)
T 3v43_A 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSCL 41 (112)
T ss_dssp SBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHH
T ss_pred cccccCCchhhCcCCCchhceEhhhcCCCCCCchh
Confidence 357777753 33 245589999999999999996
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.02 E-value=22 Score=29.25 Aligned_cols=48 Identities=21% Similarity=0.609 Sum_probs=32.3
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.+|.+-+ ..|.||.|...-|+.|-.-. + . ...++.++|..|-...+
T Consensus 27 ~C~vC~~~g------~LL~CD~C~~~fH~~Cl~Pp----L----~---~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 27 ICRVCQKPG------DLVMCNQCEFCFHLDCHLPA----L----Q---DVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp CCSSSCSSS------CCEECTTSSCEECTTSSSTT----C----C---CCCSSSCCCCSCCCCCS
T ss_pred cCcCcCCCC------CEEECCCCCCceecccCCCC----C----C---CCcCCCcCCccccCCCc
Confidence 345666532 48899999999999996321 1 1 12356899999976543
No 82
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=30.88 E-value=5.7e+02 Score=32.84 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.0
Q ss_pred CCcchhhhHhhhhcC
Q 014028 143 LCSHWTHTDCAIRDG 157 (432)
Q Consensus 143 ~Cgh~cHldCALr~~ 157 (432)
...|.|.++=.|+..
T Consensus 1631 aleHv~RI~RIL~qp 1645 (3245)
T 3vkg_A 1631 VLDHILRIDRVFRQP 1645 (3245)
T ss_dssp HHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHccC
Confidence 677788877777654
No 83
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.82 E-value=17 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.279 Sum_probs=31.0
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.||...- .+|. .. .|||.-|.+|..+...... .....+.|..|.....
T Consensus 21 ~C~IC~~~~--~~p~---~~-~CgH~fC~~Ci~~~~~~~~---------~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 21 TCPICLELL--KEPV---SA-DCNHSFCRACITLNYESNR---------NTDGKGNCPVCRVPYP 70 (85)
T ss_dssp SCTTTCSCC--SSCE---EC-TTSCCBCHHHHHHHHHHSB---------CTTSCBCCTTTCCCCC
T ss_pred CCcCCChhh--Ccce---eC-CCCCHHHHHHHHHHHHhcc---------CCCCCCCCCCCCCcCC
Confidence 467776631 2343 22 5999999999876544322 1123578999987754
No 84
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=30.43 E-value=5.3 Score=28.39 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=22.1
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||.. |....++-..+.--.|||.-|.+|..+-.
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~ 41 (64)
T 2xeu_A 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL 41 (64)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHH
T ss_pred CCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHH
Confidence 4778877 33321112233344799999999987543
No 85
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=30.19 E-value=3.2e+02 Score=24.89 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=16.4
Q ss_pred hhchHHHHHhhhhhhhhc---HHHHHHHHHHHHHHHHhhc
Q 014028 382 TDKSEEEYASSYLKLRLS---EAEAEKQYLFEKIKLQESS 418 (432)
Q Consensus 382 ~ek~EeeYas~~~kl~l~---Eaee~r~~~~eelk~~e~s 418 (432)
.++++++|...+.++--. .-++....+|+.+|-+|..
T Consensus 181 ~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~ 220 (301)
T 2efk_A 181 AEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDER 220 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665544432211 1123333445555555533
No 86
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.34 E-value=15 Score=27.38 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=20.0
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhc
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRD 156 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~ 156 (432)
.|.||...-.+.+....+ -|||.-|.+|..+-
T Consensus 25 ~C~IC~~~~~~~~~~~~l---~C~H~fh~~Ci~~w 56 (75)
T 1x4j_A 25 LCVVCMCDFESRQLLRVL---PCNHEFHAKCVDKW 56 (75)
T ss_dssp EETTTTEECCBTCEEEEE---TTTEEEETTHHHHH
T ss_pred CCeECCcccCCCCeEEEE---CCCCHhHHHHHHHH
Confidence 467887632222233333 48999999998764
No 87
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.40 E-value=10 Score=28.15 Aligned_cols=50 Identities=18% Similarity=0.352 Sum_probs=30.0
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.||...- .+|.. + .|||+-|.+|..+....... ....+.|.-|.....
T Consensus 21 ~C~IC~~~~--~~p~~-~---~CgH~fC~~Ci~~~~~~~~~---------~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 21 TCPICLELL--TQPLS-L---DCGHSFCQACLTANHKKSML---------DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCTTTCSCC--SSCBC-C---SSSCCBCTTHHHHHHHHHHH---------TTSCCCCTTTCCSSC
T ss_pred CCCCCCccc--CCcee-C---CCCCHHHHHHHHHHHHHhhc---------CCCCCcCCCCCCccC
Confidence 467777631 12322 1 69999999998765443220 112567888887654
No 88
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=27.90 E-value=9.8 Score=27.66 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=21.7
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhc
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRD 156 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~ 156 (432)
.|.||.. |+....+-..+.--.|||.-|.+|..+-
T Consensus 12 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~ 47 (71)
T 3ng2_A 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDS 47 (71)
T ss_dssp BCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHH
T ss_pred CCcccChhhhccccccCCeEeCCCCChHhHHHHHHH
Confidence 4677777 3332111233344579999999999754
No 89
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=27.47 E-value=31 Score=32.36 Aligned_cols=119 Identities=20% Similarity=0.358 Sum_probs=59.5
Q ss_pred CcHHHHHHHHHHHHHHhhhcCCCcchhHHHHhHHhhccCCCcchhHHHhhh-hhhhhhhhhhccCccccccCCCCCCcch
Q 014028 4 LPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAH-RVHLEILVAINSGIQAFLHPNISLSQTS 82 (432)
Q Consensus 4 ~p~e~le~lK~~lr~il~~~~~~~~~de~l~Lq~~lq~R~Dlt~~~l~~ah-r~qLEilVaiktgi~aFl~p~~~~s~s~ 82 (432)
++.+-|+-+|.-|..|++..++.-..-+.+.| ++.++.+.|.+.- -..|..||. .|--.-......++.-.
T Consensus 93 yt~~Ei~~fk~lle~i~~s~~~~~s~~~~lnl------~~~~~~k~l~~~eae~lL~~lv~--~gWl~~~~g~~~l~~R~ 164 (238)
T 3nw0_A 93 FAENELDLFRKALELIIDSETGFASSTNILNL------VDQLKGKKMRKKEAEQVLQKFVQ--NKWLIEKEGEFTLHGRA 164 (238)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSSCEEHHHHHGG------GTTCSSSCCCHHHHHHHHHHHHH--TTSEEEETTEEEECHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCceeHHHHHHH------HhhcccCCCCHHHHHHHHHHHHH--hcchhhhCCEEEecCcc
Confidence 34555888999999999643322111122222 2223322222211 223455553 33111111334455555
Q ss_pred HHHhhhhcccccccccccCCCCCCccccccCCCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 83 LIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 83 LveiFl~~~CrN~aCrs~Lp~~dc~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
|+|.=.|.+-.= + ++ --.|.+|+..-. .+ +.|..|++.-|.+|.-+-.
T Consensus 165 l~El~~~l~~~~-------~-~~--------------i~~C~iC~~iv~-~g----~~C~~C~~~~H~~C~~~~~ 212 (238)
T 3nw0_A 165 ILEMEQYIRETY-------P-DA--------------VKICNICHSLLI-QG----QSCETCGIRMHLPCVAKYF 212 (238)
T ss_dssp HHHHHHHHHHHC-------T-TT--------------CCBCTTTCSBCS-SC----EECSSSCCEECHHHHHHHT
T ss_pred HHHHHHHHHHhc-------C-CC--------------CCcCcchhhHHh-CC----cccCccChHHHHHHHHHHH
Confidence 776655543311 0 10 223566666422 11 7888899999999997643
No 90
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.42 E-value=29 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=24.9
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||.-| .++-.-. ..-++.|..|+..+|-.|.-+-.
T Consensus 27 ~pt~C~~C-----~~~lwGl-~kqg~~C~~C~~~~Hk~C~~~v~ 64 (83)
T 2yuu_A 27 QPTFCSVC-----KDFVWGL-NKQGYKCRQCNAAIHKKCIDKII 64 (83)
T ss_dssp SCCCCSSS-----CCCCCSS-SCCEEEETTTCCEECTTGGGTCC
T ss_pred CCcChhhc-----Chhhccc-cccccccCCcCCeeChhhhhhCC
Confidence 45777544 4432111 12567899999999999987643
No 91
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.33 E-value=23 Score=27.89 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=22.5
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQ 158 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~ 158 (432)
|.||+..-. ..+.|..|+|.-|.+|.-+--.
T Consensus 18 C~IC~~~i~-----~g~~C~~C~h~fH~~Ci~kWl~ 48 (74)
T 2ct0_A 18 CNICHSLLI-----QGQSCETCGIRMHLPCVAKYFQ 48 (74)
T ss_dssp CSSSCCBCS-----SSEECSSSCCEECHHHHHHHST
T ss_pred CcchhhHcc-----cCCccCCCCchhhHHHHHHHHH
Confidence 567776322 1368889999999999986554
No 92
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=27.17 E-value=22 Score=32.12 Aligned_cols=48 Identities=21% Similarity=0.609 Sum_probs=32.2
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.+|++-+ ..+.||.|..+-|+.|-.-. . . ...++.++|..|-....
T Consensus 4 ~C~~C~~~g------~ll~Cd~C~~~~H~~Cl~p~----l----~---~~p~g~W~C~~C~~~~~ 51 (189)
T 2ro1_A 4 ICRVCQKPG------DLVMCNQCEFCFHLDCHLPA----L----Q---DVPGEEWSCSLCHVLPD 51 (189)
T ss_dssp CBTTTCCCS------SCCCCTTTCCBCCSTTSTTC----C----S---SCCCTTCCTTTTSCSCC
T ss_pred cCccCCCCC------ceeECCCCCchhccccCCCC----c----c---cCCCCCCCCcCccCCCC
Confidence 356666432 37889999999999996321 1 1 12356789999977643
No 93
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.09 E-value=19 Score=27.92 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=17.9
Q ss_pred eEEecCCCcchhhhHhhhhcC
Q 014028 137 RWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 137 ~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
..+.|..|+..+|-.|+-+-.
T Consensus 44 qG~~C~~C~~~~Hk~C~~~v~ 64 (74)
T 2db6_A 44 FGLRCKNCKTNIHEHCQSYVE 64 (74)
T ss_dssp EEEEESSSCCEECTTTTGGGS
T ss_pred CccccCCCCCccChhHHhhCC
Confidence 568999999999999987654
No 94
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=26.99 E-value=21 Score=27.84 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=19.8
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhc
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRD 156 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~ 156 (432)
.|.||...-.+.+....+ -|||.-|.+|..+-
T Consensus 42 ~C~IC~~~~~~~~~~~~l---~C~H~Fh~~Ci~~w 73 (91)
T 2l0b_A 42 CCPICCSEYVKGDVATEL---PCHHYFHKPCVSIW 73 (91)
T ss_dssp EETTTTEECCTTCEEEEE---TTTEEEEHHHHHHH
T ss_pred CCcccChhhcCCCcEEec---CCCChHHHHHHHHH
Confidence 467887632222333333 39999999998754
No 95
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.87 E-value=18 Score=28.60 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=29.4
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.||...- .+|.. -.|||.-|..|..+....+. +.+.|.-|.....
T Consensus 23 ~C~IC~~~~--~~p~~----~~CgH~fC~~Ci~~~~~~~~------------~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 23 ECPICLELI--KEPVS----TKCDHIFCKFCMLKLLNQKK------------GPSQCPLCKNDIT 69 (112)
T ss_dssp SCSSSCCCC--SSCCB----CTTSCCCCSHHHHHHHHSSS------------SSCCCTTTSCCCC
T ss_pred CCcccChhh--cCeEE----CCCCCHHHHHHHHHHHHhCC------------CCCCCcCCCCcCC
Confidence 467776621 23433 16999999999876544221 2367888987643
No 96
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=26.61 E-value=25 Score=29.65 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=0.0
Q ss_pred ccccccccCCCCceeEEecC--CCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccC
Q 014028 123 CVICNKFDFEVNTCRWIGCD--LCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRAC 181 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd--~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C 181 (432)
|.+|. ++-.-|.|| .|-.|-|+.|.- +..+ .++.++|..|
T Consensus 18 C~~C~------~~G~ll~CD~~~Cp~~fH~~Cl~---L~~~----------P~g~W~Cp~c 59 (107)
T 4gne_A 18 CFQCG------DGGELVMCDKKDCPKAYHLLCLN---LTQP----------PYGKWECPWH 59 (107)
T ss_dssp CTTTC------CCSEEEECCSTTCCCEECTGGGT---CSSC----------CSSCCCCGGG
T ss_pred CCcCC------CCCcEeEECCCCCCcccccccCc---CCcC----------CCCCEECCCC
No 97
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=25.91 E-value=17 Score=23.81 Aligned_cols=19 Identities=32% Similarity=0.854 Sum_probs=15.3
Q ss_pred eEEcccCCCCchhhhHHHHH
Q 014028 175 LFRCRACNRTSELLGWVKDV 194 (432)
Q Consensus 175 ~f~C~~C~~~seLlg~vK~v 194 (432)
.|.|-.|.|+ .|.|||.+.
T Consensus 5 dffcetcskp-wlvgwwdqf 23 (26)
T 1loi_A 5 DFFCETCSKP-WLVGWWDQF 23 (26)
T ss_dssp HHHHHTSSCT-TGGGGHHHH
T ss_pred HHHHHhcCCc-hhhhhHHHh
Confidence 4789999875 799999764
No 98
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=25.84 E-value=18 Score=28.75 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=14.1
Q ss_pred ccccccccCCCCceeEEecCCCcch
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHW 147 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~ 147 (432)
|. |+.+-...++.-|..|. ||..
T Consensus 7 C~-C~~~~~~~~~~kT~~C~-CG~~ 29 (71)
T 1gh9_A 7 CD-CGRALYSREGAKTRKCV-CGRT 29 (71)
T ss_dssp ET-TSCCEEEETTCSEEEET-TTEE
T ss_pred CC-CCCEEEEcCCCcEEECC-CCCe
Confidence 44 66665555666666665 6653
No 99
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=25.63 E-value=37 Score=28.43 Aligned_cols=44 Identities=18% Similarity=0.523 Sum_probs=27.6
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|+||...- .+|.. + .|||.-|.+|..+... ....|+-|.+...
T Consensus 55 ~C~iC~~~~--~~~~~-~---~CgH~fc~~Ci~~~~~---------------~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYF--IEAVT-L---NCAHSFCSYCINEWMK---------------RKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBC--SSEEE-E---TTSCEEEHHHHHHHTT---------------TCSBCTTTCCBCC
T ss_pred CCcccCccc--CCceE-C---CCCCCccHHHHHHHHH---------------cCCcCCCCCCcCC
Confidence 367776631 24432 2 5999999999875432 1135999987643
No 100
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=25.10 E-value=1.3e+02 Score=23.02 Aligned_cols=63 Identities=10% Similarity=0.207 Sum_probs=44.1
Q ss_pred hhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCch-hhHHHHHHHHHHHHHhCCCChhHHHHHH
Q 014028 187 LLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPR-GRKLYWKCEELLEKMKGGLPESMACRGI 253 (432)
Q Consensus 187 Llg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~r-gK~L~~~~e~al~KLk~g~~~~~~~~~i 253 (432)
+++.+.+++ ... +.+.+.+-|+-+-..|-|+-... -+.+..+...++..|.++.+|..+|..|
T Consensus 11 vv~~ve~~l---~~n-t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~iI~~l~~~~~P~~IC~~l 74 (77)
T 1of9_A 11 LINTLENLL---TTK-GADKVKDYISSLCNKASGFIATLCTKVLDFGIDKLIQLIEDKVDANAICAKI 74 (77)
T ss_dssp HHHHHHHHC---SSS-CSHHHHHHHHHHHTTCSSTTHHHHHHHHHHCHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHH---HHC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhc
Confidence 445555554 455 78888899998888885553221 2345566677888889999999999865
No 101
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=24.85 E-value=22 Score=30.01 Aligned_cols=17 Identities=29% Similarity=0.989 Sum_probs=14.9
Q ss_pred ceeEEecCCCcchhhhH
Q 014028 135 TCRWIGCDLCSHWTHTD 151 (432)
Q Consensus 135 ~~~Wi~Cd~Cgh~cHld 151 (432)
.-.||.||.|+.|=.|.
T Consensus 25 ~~~WVQCD~C~KWRrLP 41 (100)
T 2l7p_A 25 ESAWVRCDDCFKWRRIP 41 (100)
T ss_dssp SSEEEECTTTCCEEEEC
T ss_pred CCeEEeeCCCCccccCC
Confidence 56899999999998775
No 102
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=24.67 E-value=34 Score=26.37 Aligned_cols=38 Identities=32% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhch
Q 014028 347 EKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKS 385 (432)
Q Consensus 347 EsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~ 385 (432)
|-|-+||.||.+- -...++|..||+.+..-|+.+..++
T Consensus 16 EvL~eIKeAE~~A-~~iVeeA~~ea~~ii~eAreeAkeI 53 (56)
T 2k6i_A 16 EAIKEVKLAEEQA-VKEIEEAKNRAEQIKAEAIEEAKKL 53 (56)
T ss_dssp TTSCTTCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778887653 3456677777777777666665554
No 103
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=23.97 E-value=89 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=36.1
Q ss_pred hhhcccCCCchhhHHHHHHHHHHHHHhCCCChhHHHHHHHHHhhhhcc
Q 014028 215 SRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEV 262 (432)
Q Consensus 215 ~rIfrGSed~rgK~L~~~~e~al~KLk~g~~~~~~~~~il~ff~~~~~ 262 (432)
.|-|.|-++ |+++=-.+++++++.|++..+...+-+.+..|+.|++.
T Consensus 24 LKWFsGGkE-R~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~ 70 (118)
T 2zrr_A 24 LKWFSGGDD-RRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKN 70 (118)
T ss_dssp ------CCC-HHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHH
T ss_pred ceeccCCHH-HHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 355666543 77888999999999999998888999999999999875
No 104
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.82 E-value=40 Score=24.53 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=29.2
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS 185 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s 185 (432)
.|.||...- .+|... .|||.-|.+|..+.... ....+.|.-|....
T Consensus 22 ~C~IC~~~~--~~~~~~----~CgH~fC~~Ci~~~~~~------------~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 22 ICPICLDIL--QKPVTI----DCGHNFCLKCITQIGET------------SCGFFKCPLCKTSV 67 (73)
T ss_dssp BCTTTCSBC--SSEEEC----TTCCEEEHHHHHHHCSS------------SCSCCCCSSSCCCC
T ss_pred EeccCCccc--CCeEEc----CCCChhhHHHHHHHHHc------------CCCCCCCCCCCCcC
Confidence 467777631 133322 79999999999876541 12345788887764
No 105
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.72 E-value=42 Score=24.62 Aligned_cols=44 Identities=23% Similarity=0.406 Sum_probs=27.6
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.||... -.++.. - -|||.-|.+|..+....+ ..|.-|...-.
T Consensus 17 ~C~IC~~~--~~~~~~---~-~CgH~fC~~Ci~~~~~~~---------------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 17 ECAICLQT--CVHPVS---L-PCKHVFCYLCVKGASWLG---------------KRCALCRQEIP 60 (71)
T ss_dssp BCSSSSSB--CSSEEE---E-TTTEEEEHHHHHHCTTCS---------------SBCSSSCCBCC
T ss_pred CCccCCcc--cCCCEE---c-cCCCHHHHHHHHHHHHCC---------------CcCcCcCchhC
Confidence 46677653 133422 2 599999999997654311 46888877643
No 106
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=23.68 E-value=35 Score=27.80 Aligned_cols=23 Identities=17% Similarity=0.558 Sum_probs=20.5
Q ss_pred CeeEEcccCCCCchhhhHHHHHH
Q 014028 173 EMLFRCRACNRTSELLGWVKDVF 195 (432)
Q Consensus 173 D~~f~C~~C~~~seLlg~vK~vf 195 (432)
...|||-+||..-|.+.||.++.
T Consensus 56 k~~~~Cf~cg~gGd~i~fv~~~~ 78 (103)
T 1d0q_A 56 KQIFHCFGCGAGGNAFTFLMDIE 78 (103)
T ss_dssp TTEEEETTTCCEECHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHh
Confidence 35799999999999999999885
No 107
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=23.56 E-value=34 Score=30.52 Aligned_cols=38 Identities=34% Similarity=0.877 Sum_probs=26.1
Q ss_pred ccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCC
Q 014028 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNR 183 (432)
Q Consensus 123 C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~ 183 (432)
|.||.-||.+++.|-=-.|.+|- + | +-+.-|||-.||-
T Consensus 86 C~~C~l~d~~k~~yHC~~CgiCR---------------~-----G---~~~~ffHC~~C~~ 123 (143)
T 2dkt_A 86 CSICHLFDKDKRQYHCESCGICR---------------I-----G---PKEDFFHCLKCNL 123 (143)
T ss_dssp CSSSCCEECSSSEEEETTTTEEE---------------E-----S---CGGGEEEETTTTE
T ss_pred eceeecccCCCceecCCCCCcee---------------c-----c---CCcCcEECCcCCe
Confidence 57887789888876655554442 1 2 2488999999985
No 108
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.26 E-value=1.2e+02 Score=31.86 Aligned_cols=84 Identities=24% Similarity=0.330 Sum_probs=23.2
Q ss_pred Hhhhhh-hHHhh-hhhhhhhhhhhhhhhhhhhHhHHHHHHH-----HH-------hhccchhHHHHHHHHhhHHHHHHHh
Q 014028 296 KMEMVA-DEKMR-MFKKARLSLDACDRELEDKAREVTELQM-----ER-------TKKKQQIEELEKIVRLKQAEADMFQ 361 (432)
Q Consensus 296 ~~e~v~-~ek~~-~~k~a~~~l~~~~~~l~~k~~~~~el~~-----~~-------~~kk~~~eeLEsiVrlKqAEA~MfQ 361 (432)
.|..-| ++|.+ ...+.+++.+.-.|+..++.+..-|.++ +. .+....+++|+.=.++-|.||+..+
T Consensus 304 qm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~ 383 (575)
T 2i1j_A 304 QMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELE 383 (575)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666 66643 4677777776666655544433222111 11 1122446788999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 014028 362 LKANEAKREAERLQRIAL 379 (432)
Q Consensus 362 ~kAdeArrEAE~l~ri~~ 379 (432)
.++.+|..|.++|+..+.
T Consensus 384 ~~~~~~e~~~~~l~~~~~ 401 (575)
T 2i1j_A 384 QRQNELQAMMQRLEETKN 401 (575)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999887643
No 109
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.22 E-value=23 Score=26.31 Aligned_cols=32 Identities=22% Similarity=0.602 Sum_probs=19.8
Q ss_pred ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcC
Q 014028 122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDG 157 (432)
Q Consensus 122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~ 157 (432)
.|.||.. |+... ....+ .|||.-|.+|..+-.
T Consensus 17 ~C~IC~~~~~~~~-~~~~~---~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 17 ECPVCKEDYALGE-SVRQL---PCNHLFHDSCIVPWL 49 (78)
T ss_dssp CCTTTTSCCCTTS-CEEEC---TTSCEEETTTTHHHH
T ss_pred CCeeCCccccCCC-CEEEe---CCCCeecHHHHHHHH
Confidence 4677776 43222 22222 499999999987653
No 110
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=23.07 E-value=24 Score=30.74 Aligned_cols=11 Identities=18% Similarity=0.483 Sum_probs=0.0
Q ss_pred eEEcccCCCCc
Q 014028 175 LFRCRACNRTS 185 (432)
Q Consensus 175 ~f~C~~C~~~s 185 (432)
...|..||+..
T Consensus 92 ~~~CpkCg~~~ 102 (133)
T 3qt1_I 92 DRECPKCHSRE 102 (133)
T ss_dssp -----------
T ss_pred cCCCCCCCCce
Confidence 58899999853
No 111
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.74 E-value=24 Score=24.99 Aligned_cols=31 Identities=29% Similarity=0.793 Sum_probs=22.3
Q ss_pred CCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhh
Q 014028 114 RNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAI 154 (432)
Q Consensus 114 ~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCAL 154 (432)
.|.||.- |.++-. ..+.|..|+..+|-.|+-
T Consensus 13 ~pt~C~~-----C~~~l~-----qG~~C~~C~~~~H~~C~~ 43 (52)
T 1faq_A 13 KLAFCDI-----CQKFLL-----NGFRCQTCGYKFHEHCST 43 (52)
T ss_dssp SCEECTT-----SSSEEC-----SEEECTTTTCCBCSTTSS
T ss_pred CCcCCCC-----cccccc-----cCCEeCCCCCeEChhHHh
Confidence 4566654 455422 578999999999999975
No 112
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=22.32 E-value=4.2e+02 Score=23.69 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=18.5
Q ss_pred hhhhchHHHHHhhhhhhh--hcHHHHHHHHHHHHHHHHhhcc
Q 014028 380 AKTDKSEEEYASSYLKLR--LSEAEAEKQYLFEKIKLQESSR 419 (432)
Q Consensus 380 aK~ek~EeeYas~~~kl~--l~Eaee~r~~~~eelk~~e~s~ 419 (432)
+|..|++++|.....++- -.+-++.....|+.+|-+|..|
T Consensus 170 ~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R 211 (276)
T 2v0o_A 170 VKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETH 211 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777765444321 1122333344455555555433
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=22.00 E-value=31 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=23.6
Q ss_pred cccccccc-CC---CCceeEEecCCCcchhhhHhh
Q 014028 123 CVICNKFD-FE---VNTCRWIGCDLCSHWTHTDCA 153 (432)
Q Consensus 123 C~IC~kfD-~~---~d~~~Wi~Cd~Cgh~cHldCA 153 (432)
|-+|..-+ .| -++-..|.|+.|+.+-|..|.
T Consensus 4 C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl 38 (114)
T 2kwj_A 4 CDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCL 38 (114)
T ss_dssp CSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTT
T ss_pred CccCCCCccccccCCCCCCCeEeCCCCCccchhhC
Confidence 56666643 22 346789999999999999996
No 114
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=21.94 E-value=90 Score=26.36 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=37.6
Q ss_pred hhcccCCCchhhHHHHHHHHHHHHHhCCCChhHHHHHHHHHhhhhcc
Q 014028 216 RIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEV 262 (432)
Q Consensus 216 rIfrGSed~rgK~L~~~~e~al~KLk~g~~~~~~~~~il~ff~~~~~ 262 (432)
+-|.|-.+ |+++=-.+++++++.|++..+....-+.+..|+.|+..
T Consensus 5 KWfsGG~E-R~~~Ai~iI~~Ll~~l~~~~~~~~Lk~vL~~Y~~EL~~ 50 (98)
T 2k19_A 5 KWFSGGKE-RSNQAENIITDLLDDLKTDLDNESLKKVLENYLEELKQ 50 (98)
T ss_dssp CCCSCCSC-HHHHHHHHHHHHHHHHTTCSSCSSTHHHHHHHHHHHHS
T ss_pred eeccCCHH-HHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhc
Confidence 34555432 77888999999999999888888899999999999875
No 115
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=21.82 E-value=90 Score=25.07 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCC---CChhHHHHHHHHHhh
Q 014028 230 YWKCEELLEKMKGG---LPESMACRGILLFFQ 258 (432)
Q Consensus 230 ~~~~e~al~KLk~g---~~~~~~~~~il~ff~ 258 (432)
.++++++...+.+| +++..+-.-||.||+
T Consensus 57 ~~kV~~iK~aI~~GtY~vd~~~iA~kml~~~~ 88 (88)
T 1rp3_B 57 EKKVKELKEKIEKGEYEVSDEKVVKGLIEFFT 88 (88)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhC
Confidence 56999999999999 789999999999984
No 116
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=21.24 E-value=65 Score=31.98 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.8
Q ss_pred eeEEcccCCCCchhhhHHHHHH
Q 014028 174 MLFRCRACNRTSELLGWVKDVF 195 (432)
Q Consensus 174 ~~f~C~~C~~~seLlg~vK~vf 195 (432)
+.|||-+||..-|.+.||.++-
T Consensus 54 ~~~~CFgCg~gGd~i~fv~~~~ 75 (407)
T 2au3_A 54 QIFKCFGCGVGGDAIKFVSLYE 75 (407)
T ss_dssp TEEEETTTCCEECHHHHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHh
Confidence 5799999999999999999874
No 117
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=20.28 E-value=1.2e+02 Score=23.90 Aligned_cols=45 Identities=22% Similarity=0.481 Sum_probs=29.6
Q ss_pred cccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCch
Q 014028 122 MCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSE 186 (432)
Q Consensus 122 ~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~se 186 (432)
.|.||...- .+|. ....|||+-|..|..+.... ...|.-|+....
T Consensus 17 ~C~IC~~~~--~~p~---~~~~CgH~fC~~Ci~~~~~~---------------~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 17 MCVLCGGYF--IDAT---TIIECLHSFCKTCIVRYLET---------------SKYCPICDVQVH 61 (108)
T ss_dssp BCTTTSSBC--SSEE---EETTTCCEEEHHHHHHHHTS---------------CSBCTTTCCBSC
T ss_pred CCccCChHH--hCcC---EeCCCCChhhHHHHHHHHHh---------------CCcCcCCCcccc
Confidence 477887632 2342 33479999999998765431 157999987754
Done!