BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014029
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 248 bits (632), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 228/437 (52%), Gaps = 19/437 (4%)
Query: 8 AIELNVKQGEPTLVKPAEDTEKGLYFLSNLDQNIAVI-VRTIYCFKSDEKGNEKAGEVIK 66
A+++ VK E T+V+PA++T + SN+D + ++Y ++ N +V+K
Sbjct: 2 AMKIEVK--ESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLK 59
Query: 67 NALEKVLVHYYPLAGRLTISSEGKLIINCTGEGAVFVEAEANCVLEKIGDITKPDPETLG 126
+AL + LV +YP+AGRL +G++ I C GEG +FVEAE++ V++ GD P E L
Sbjct: 60 DALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTLE-LR 117
Query: 127 KLVYDIPGAKNILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVNAWAETARGL 186
+L+ + ++ I L QVT FKCGG LG+ M H DG + F+N+W++ ARGL
Sbjct: 118 RLIPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGL 177
Query: 187 PLKIPPFLDRSILKARSPPKIEDLHQEFA-----EIEDKSGTSELYKDEMLYRSFCFDSA 241
+ +PPF+DR++L+AR PP+ + H E+ ++ ++ S+ E F
Sbjct: 178 DVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVP-ETAVSIFKLTRE 236
Query: 242 KLEKIKMIAMEDEVLDKCSTFEALSAFVWKARTKALKFLPHQQTKLLFAVDGRSKFNPPL 301
++ +K + ED S++E L+ VW+ KA Q TKL A DGR++ P L
Sbjct: 237 QISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSL 296
Query: 302 PKGYFGNGIVLTNSICQAGELTEKPLSFAVGQVQDAIKMVNDSYMRSAIDYFE------- 354
P GYFGN I I AG+L KP+ +A ++ DA+ +++ Y+RSA+DY E
Sbjct: 297 PPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKA 356
Query: 355 -VTRARPXXXXXXXXXXXXXXXFHTTDFGWGEPVLSGPVALPEKEVSLFLSHGKERKSIN 413
V A H DFGWG P+ GP + + +S L S++
Sbjct: 357 LVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMS 416
Query: 414 VLLGLPASAMKIFQELM 430
V + L MK+FQ +
Sbjct: 417 VAISLQGEHMKLFQSFL 433
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 143/435 (32%), Positives = 225/435 (51%), Gaps = 17/435 (3%)
Query: 10 ELNVKQGEPTLVKPAEDTEKGLYFLSNLDQNIAVI-VRTIYCFKSDEKGNEKAGEVIKNA 68
+ ++ E T+V+PA++T + SN+D + ++Y ++ N +V+K+A
Sbjct: 5 SMKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDA 64
Query: 69 LEKVLVHYYPLAGRLTISSEGKLIINCTGEGAVFVEAEANCVLEKIGDITKPDPETLGKL 128
L + LV +YP+AGRL +G++ I C GEG +FVEAE++ V++ GD P E L +L
Sbjct: 65 LSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTLE-LRRL 122
Query: 129 VYDIPGAKNILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVNAWAETARGLPL 188
+ + ++ I L QVT FKCGG LG+ M H DG + F+N+W++ ARGL +
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 182
Query: 189 KIPPFLDRSILKARSPPKIEDLHQEFA-----EIEDKSGTSELYKDEMLYRSFCFDSAKL 243
+PPF+DR++L+AR PP+ + H E+ + ++ S+ E F ++
Sbjct: 183 TLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVP-ETAVSIFKLTREQI 241
Query: 244 EKIKMIAMEDEVLDKCSTFEALSAFVWKARTKALKFLPHQQTKLLFAVDGRSKFNPPLPK 303
+K + ED S++E L+ VW+ KA Q TKL A DGR++ P LP
Sbjct: 242 SALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPP 301
Query: 304 GYFGNGIVLTNSICQAGELTEKPLSFAVGQVQDAIKMVNDSYMRSAIDYFE--------V 355
GYFGN I I AG+L KP+ +A ++ DA+ +++ Y+RSA+DY E V
Sbjct: 302 GYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALV 361
Query: 356 TRARPXXXXXXXXXXXXXXXFHTTDFGWGEPVLSGPVALPEKEVSLFLSHGKERKSINVL 415
A H DFGWG P+ GP + + +S L S++V
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVA 421
Query: 416 LGLPASAMKIFQELM 430
+ L MK+FQ +
Sbjct: 422 ISLQGEHMKLFQSFL 436
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 224/435 (51%), Gaps = 17/435 (3%)
Query: 10 ELNVKQGEPTLVKPAEDTEKGLYFLSNLDQNIAVI-VRTIYCFKSDEKGNEKAGEVIKNA 68
+ ++ E T+V+PA++T + SN+D + ++Y ++ N +V+K+A
Sbjct: 5 SMKIEVKESTMVRPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKDA 64
Query: 69 LEKVLVHYYPLAGRLTISSEGKLIINCTGEGAVFVEAEANCVLEKIGDITKPDPETLGKL 128
L + LV +YP+AGRL +G++ I C GEG +FVEAE++ V++ GD P E L +L
Sbjct: 65 LSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFA-PTLE-LRRL 122
Query: 129 VYDIPGAKNILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVNAWAETARGLPL 188
+ + ++ I L QVT FK GG LG+ M H DG + F+N+W++ ARGL +
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARGLDV 182
Query: 189 KIPPFLDRSILKARSPPKIEDLHQEFA-----EIEDKSGTSELYKDEMLYRSFCFDSAKL 243
+PPF+DR++L+AR PP+ + H E+ + ++ S+ E F ++
Sbjct: 183 TLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVP-ETAVSIFKLTREQI 241
Query: 244 EKIKMIAMEDEVLDKCSTFEALSAFVWKARTKALKFLPHQQTKLLFAVDGRSKFNPPLPK 303
+K + ED S++E L+ VW+ KA Q TKL A DGR++ P LP
Sbjct: 242 SALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYIATDGRARLRPSLPP 301
Query: 304 GYFGNGIVLTNSICQAGELTEKPLSFAVGQVQDAIKMVNDSYMRSAIDYFE--------V 355
GYFGN I I AG+L KP+ +A ++ DA+ +++ Y+RSA+DY E V
Sbjct: 302 GYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQPDLKALV 361
Query: 356 TRARPXXXXXXXXXXXXXXXFHTTDFGWGEPVLSGPVALPEKEVSLFLSHGKERKSINVL 415
A H DFGWG P+ GP + + +S L S++V
Sbjct: 362 RGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFILPSPTNDGSMSVA 421
Query: 416 LGLPASAMKIFQELM 430
+ L MK+FQ +
Sbjct: 422 ISLQGEHMKLFQSFL 436
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 181/403 (44%), Gaps = 48/403 (11%)
Query: 20 LVKPAEDTEKGL--YFLSNLDQNIAVIVRTIYCFKSDEKGNE----KAGEVIKNALEKVL 73
L+ P+ T + L Y +S+LDQ + F + + + + +K +L KVL
Sbjct: 12 LILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVL 71
Query: 74 VHYYPLAGRLTISSEGKLIINCTGEGAVFVEAEANCVL----EKIGDITKPDPETLGKLV 129
H+YPLAGR+ ++S ++C G FVEA L + + ++ K D + L
Sbjct: 72 THFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQAIQNVVELEKLD-QYLPSAA 126
Query: 130 YDIPGAK-NILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVNAWAETARGLPL 188
Y PG K + E PLA +++ F+CGG +G+ ++H + D + F+NAW T RG
Sbjct: 127 Y--PGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETE 184
Query: 189 KIPPFLDRSILKARSPPKIEDLHQEFAEIEDKSGTSELYKDE-MLYRSFCFDSAKLEKIK 247
+ P D L AR P + D + + EL DE ++ + F FD K+ ++
Sbjct: 185 IVLPNFD---LAARHFPPV-----------DNTPSPELVPDENVVMKRFVFDKEKIGALR 230
Query: 248 MIAMEDEVLDKCSTFEALSAFVWKAR---TKALKFLPHQQTKLLFAVDGRSKFNPPLPKG 304
A S + + A++WK T+A K+ + ++ AV+ RS+ NPPLP
Sbjct: 231 AQASSASEEKNFSRVQLVVAYIWKHVIDVTRA-KYGAKNKFVVVQAVNLRSRMNPPLPHY 289
Query: 305 YFGNGIVLTNSICQAGELTEKPLSFAVGQVQDAIKMVNDSY----MRSAIDYFEVTRARP 360
GN L + A +K +G ++ +++ D + ++ +E+
Sbjct: 290 AMGNIATLLFAAVDAE--WDKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCLYELEPQE- 346
Query: 361 XXXXXXXXXXXXXXXFHTTDFGWGEPVLSGPVALPEKEVSLFL 403
F+ DFGWG+P+ + P++ +L +
Sbjct: 347 ----LLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLM 385
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 46/353 (13%)
Query: 65 IKNALEKVLVHYYPLAGRLTI-SSEGKLIINCTGEGAVFVEAEANCVLEKIGDITKPDPE 123
IK++L L H+YP G+L + + K C EG A C L+ + ++T P
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLD-LNELTGNHPR 123
Query: 124 TLGKLVYDIP------GAKNILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVN 177
K +P + +++P + QVT F G +G+ +HC+ D F+
Sbjct: 124 NCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLK 183
Query: 178 AWAETARG-------LPLKIPPFLDRSILKARSPPKIEDLHQEFAEI----EDKSGTSEL 226
AW AR L P DR I+K P +++ + + A++ ED S
Sbjct: 184 AWTSIARSGNNDESFLANGTRPLYDR-IIKY---PMLDEAYLKRAKVESFNEDYVTQSLA 239
Query: 227 YKDEMLYRSFCFDSAKLEKIK-MIAMEDEVLDKCSTFEALSAFVW----KARTKALKFLP 281
+ L +F A + ++K + + L+ S+F A++W K+R L+
Sbjct: 240 GPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFG 299
Query: 282 HQQTKLLFAVDGRSKFNPPLPKGYFGN------GIVLTN-SICQAGELTEKPLSFAVGQ- 333
F +D R++ PP+P YFGN I TN I + G +T L +G+
Sbjct: 300 -------FPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKL---IGEN 349
Query: 334 VQDAIKMVNDSYMRSAIDYFEVTRARPXXXXXXXXXXXXXXXFHTTDFGWGEP 386
+ + D ++ ++ F + F+ DFGWG+P
Sbjct: 350 LHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKP 402
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 145/353 (41%), Gaps = 46/353 (13%)
Query: 65 IKNALEKVLVHYYPLAGRLTI-SSEGKLIINCTGEGAVFVEAEANCVLEKIGDITKPDPE 123
IK++L L H+YP G+L + + K C EG A C L+ + ++T P
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLD-LNELTGNHPR 123
Query: 124 TLGKLVYDIP------GAKNILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAMEFVN 177
K +P + +++P + QVT F G +G+ +HC+ D F+
Sbjct: 124 NCDKFYDLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLK 183
Query: 178 AWAETARG-------LPLKIPPFLDRSILKARSPPKIEDLHQEFAEI----EDKSGTSEL 226
AW AR L P DR I+K P +++ + + A++ ED S
Sbjct: 184 AWTSIARSGNNDESFLANGTRPLYDR-IIKY---PXLDEAYLKRAKVESFNEDYVTQSLA 239
Query: 227 YKDEMLYRSFCFDSAKLEKIK-MIAMEDEVLDKCSTFEALSAFVW----KARTKALKFLP 281
+ L +F A + ++K + + L+ S+F A++W K+R L+
Sbjct: 240 GPSDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFG 299
Query: 282 HQQTKLLFAVDGRSKFNPPLPKGYFGN------GIVLTN-SICQAGELTEKPLSFAVGQ- 333
F +D R++ PP+P YFGN I TN I + G +T L +G+
Sbjct: 300 -------FPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKL---IGEN 349
Query: 334 VQDAIKMVNDSYMRSAIDYFEVTRARPXXXXXXXXXXXXXXXFHTTDFGWGEP 386
+ + D ++ + F + F+ DFGWG+P
Sbjct: 350 LHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKP 402
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 138/349 (39%), Gaps = 33/349 (9%)
Query: 64 VIKNALEKVLVHYYPLAGRLTISSEGK---LIINCTGEGAVFVEAEANCVLEKIGDITKP 120
+K++L L +Y PLAG + + + TG + +E++ +
Sbjct: 59 TLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESD---XDFNYLIGY 115
Query: 121 DPETLGKLVYDIP------GAKNILEMPPLAAQVTRFKCGGFVLGLCMNHCMFDGIGAME 174
P + +P A + P LA QVT F G +G +H DG ++
Sbjct: 116 HPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVK 175
Query: 175 FVNAWA------ETARGLPLKIPPFLDRSILKARSPPKI-EDLHQEFAEIEDKSGTSELY 227
FV AWA + L + PF DRS++K P + + E + + S++
Sbjct: 176 FVRAWALLNKFGGDEQFLANEFIPFYDRSVIK--DPNGVGXSIWNEXKKYKHXXKXSDVV 233
Query: 228 KDEMLYR-SFCFDSAKLEKIK-MIAMEDEVLDKCSTFEALSAFVWKA--RTKALKFLPHQ 283
R +F + K+K ++ L ++F A+VW +++A
Sbjct: 234 TPPDKVRGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAATGEEID 293
Query: 284 QTKLLF---AVDGRSKFNPPLPKGYFGNGIVLTNSICQAGELTEKP-LSFAVGQVQDAI- 338
+ F A D R++FNPPLP YFGN +V + + +L K + AV + +AI
Sbjct: 294 ENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAVELIGEAIR 353
Query: 339 -KMVNDSYMRSAIDYFEVTRARPXXXXXXXXXXXXXXXFHTTDFGWGEP 386
+ ++ ++ S + E + + DFGWG P
Sbjct: 354 KRXKDEEWILSGSWFKEYDKV--DAKRSLSVAGSPKLDLYAADFGWGRP 400
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 10/154 (6%)
Query: 151 FKCGGFVLGLCMNHCMFDGIGAMEFVNAWAETARGLPLKIPPFLDRSILKARSPPKIED- 209
F GG +L + H D +G + ++ R P ++ + P +E+
Sbjct: 143 FIKGGLILTVNGQHGAMDMVGQDAVIRLLSKACRNDPFTEEEMTAMNLDRKTIVPYLENY 202
Query: 210 -----LHQEFAEIEDKSGTSELYKDEMLYRSFCFDSAKLEKIKMIAME--DEVLDKCSTF 262
+ + + + G + L + F F + ++K A + D ST
Sbjct: 203 TIGPEVDHQIVKADVAGGDAVLTPVSASWAFFTFSPKAMSELKDAATKTLDASTKFVSTD 262
Query: 263 EALSAFVWK--ARTKALKFLPHQQTKLLFAVDGR 294
+ALSAF+WK +R + + T+ AVD R
Sbjct: 263 DALSAFIWKSASRVRLERIDGSAPTEFCRAVDAR 296
>pdb|4EVQ|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0668) In Complex With
4-Hydroxybenzoate
pdb|4EVQ|B Chain B, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0668) In Complex With
4-Hydroxybenzoate
pdb|4EVR|A Chain A, Crystal Structure Of Abc Transporter From R. Palustris -
Solute Binding Protein (Rpa0668) In Complex With
Benzoate
Length = 375
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 164 HCMFDGIGAMEFVNAWAETARGLPLKIPPFLDRSILKARSP 204
+ F G GA++F+ +A G+PL P FL + A P
Sbjct: 211 YAFFSGGGALKFIKDYAAANLGIPLWGPGFLTDGVEAAAGP 251
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 10/154 (6%)
Query: 151 FKCGGFVLGLCMNHCMFDGIGAMEFVNAWAETARGLPLKIPPFLDRSILKARSPPKIED- 209
F GG +L + H D +G + ++ R P ++ + P +E+
Sbjct: 144 FIKGGLILTVNGQHGAXDXVGQDAVIRLLSKACRNDPFTEEEXTAXNLDRKTIVPYLENY 203
Query: 210 -----LHQEFAEIEDKSGTSELYKDEMLYRSFCFDSAKLEKIKMIAME--DEVLDKCSTF 262
+ + + + G + L + F F ++K A + D ST
Sbjct: 204 TIGPEVDHQIVKADVAGGDAVLTPVSASWAFFTFSPKAXSELKDAATKTLDASTKFVSTD 263
Query: 263 EALSAFVWK--ARTKALKFLPHQQTKLLFAVDGR 294
+ALSAF+WK +R + + T+ AVD R
Sbjct: 264 DALSAFIWKSASRVRLERIDGSAPTEFCRAVDAR 297
>pdb|3CE7|A Chain A, Crystal Structure Of Toxoplasma Specific Mitochodrial Acyl
Carrier Protein, 59.M03510
Length = 107
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 237 CFDSAK----LEKIKMIAMEDEVLDKCSTFEALSAFVWKARTKALKFLPHQ 283
C D+ + +E+I + + DEV D T + ++ FV R KA KF+ Q
Sbjct: 57 CLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVSERAKAGKFMKDQ 107
>pdb|1X50|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Domain From Human Galectin-4
Length = 164
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 282 HQQTKLLFAVDGRSKFNPPLPKGYFG---NGIVLTNSICQAGELTEKPLSFAV 331
HQQ L ++G FNPP+P YFG G+ +I G + SFA+
Sbjct: 8 HQQLNSLPTMEGPPTFNPPVP--YFGRLQGGLTARRTIIIKGYVPPTGKSFAI 58
>pdb|1K28|A Chain A, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 584
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 27 TEKGLYFLSNLDQNIAVIVRTIYCFKSDEKGNEKAGEVIKNALEKVLVHYYPLAGRLTIS 86
T LY ++N D N + D+K N E+ N ++ + + G TI
Sbjct: 434 TVDNLYDITNADGN--------FLVAGDKKTNVGGSEIYYNMDNRL----HQIDGSNTIF 481
Query: 87 SEGKLIINCTGEGAVFVEAEANCVLEKIGDIT-KPDPETL 125
G G G + V+ ++E DIT K D TL
Sbjct: 482 VRGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTL 521
>pdb|1WTH|A Chain A, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
Length = 584
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 27 TEKGLYFLSNLDQNIAVIVRTIYCFKSDEKGNEKAGEVIKNALEKVLVHYYPLAGRLTIS 86
T LY ++N D N + D+K N E+ N ++ + + G TI
Sbjct: 434 TVDNLYDITNADGN--------FLVAGDKKTNVGGSEIYYNMDNRL----HQIDGSNTIF 481
Query: 87 SEGKLIINCTGEGAVFVEAEANCVLEKIGDIT-KPDPETL 125
G G G + V+ ++E DIT K D TL
Sbjct: 482 VRGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTL 521
>pdb|1PDL|A Chain A, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|B Chain B, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|C Chain C, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
Length = 575
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 27 TEKGLYFLSNLDQNIAVIVRTIYCFKSDEKGNEKAGEVIKNALEKVLVHYYPLAGRLTIS 86
T LY ++N D N + D+K N E+ N ++ + + G TI
Sbjct: 434 TVDNLYDITNADGN--------FLVAGDKKTNVGGSEIYYNMDNRL----HQIDGSNTIF 481
Query: 87 SEGKLIINCTGEGAVFVEAEANCVLEKIGDIT-KPDPETL 125
G G G + V+ ++E DIT K D TL
Sbjct: 482 VRGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTL 521
>pdb|2Z6B|A Chain A, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 584
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 27 TEKGLYFLSNLDQNIAVIVRTIYCFKSDEKGNEKAGEVIKNALEKVLVHYYPLAGRLTIS 86
T LY ++N D N + D+K N E+ N ++ + + G TI
Sbjct: 434 TVDNLYDITNADGN--------FLVAGDKKTNVGGSEIYYNMDNRL----HQIDGSNTIF 481
Query: 87 SEGKLIINCTGEGAVFVEAEANCVLEKIGDIT-KPDPETL 125
G G G + V+ ++E DIT K D TL
Sbjct: 482 VRGDETKTVEGNGTILVKGNVTIIVEGNADITVKGDATTL 521
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,244,047
Number of Sequences: 62578
Number of extensions: 492842
Number of successful extensions: 1133
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 18
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)