BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014030
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BDE|A Chain A, Crystal Structure Of The Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) From Legionella Pneumophila,
Northeast Structural Genomics Target Lgr1
Length = 470
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 213/428 (49%), Gaps = 37/428 (8%)
Query: 2 VRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDT 61
+RGLV+D K GNILK+ R+ ++++YHG +++S ++ + Y + + +P+Y IDT
Sbjct: 69 IRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYV--DLGDPNYXAIDT 126
Query: 62 LFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKT 121
FS+A L+ QLVD D NP K Y + +DV+ VD H DGTLK ++ K+ K
Sbjct: 127 SFSIAFCILYGQLVDLKDTNP---DKXPSYQAIAQDVQYCVDKVHSDGTLKNIIIKNLKK 183
Query: 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYF 181
Y+ ++ +V LK G+ F++TNS + Y+ +++++ S LD G W F
Sbjct: 184 YVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYAL-SPFLDKG----EHWQGLF 238
Query: 182 DVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCR 241
+ VIT + KP FF+++ R V PE+G N G I PG
Sbjct: 239 EFVITLANKPRFFYDNLR--FLSVNPENGTXTNVH--------GPIVPG----------- 277
Query: 242 IFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXX 301
++QGG+ + L + ++LY+GDHIYGDILR KK WRT
Sbjct: 278 VYQGGNAKKFTEDLGV-GGDEILYIGDHIYGDILRLKKDCNWRTA----LVVEELGEEIA 332
Query: 302 XXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSH 361
E I+ ++ L + ID Q + + DL+ Q L
Sbjct: 333 SQIRALPIEKKIGEAXAIKKELEQKYVDLCTRSIDESSQ-QYDQEIHDLQLQISTVDLQI 391
Query: 362 QEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYRPSEG 421
+E + ++ W ++ + G + S FA+QV+RFAC+Y ++S+L +SP Y+R +
Sbjct: 392 SRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYXEKLSDLLEHSPXTYFRANRR 451
Query: 422 FMPHEFEI 429
+ H+ +I
Sbjct: 452 LLAHDIDI 459
>pdb|4G63|A Chain A, Crystal Structure Of Cytosolic Imp-Gmp Specific
5'-Nucleotidase (Lpg0095) In Complex With Phosphate Ions
From Legionella Pneumophila, Northeast Structural
Genomics Consortium Target Lgr1
Length = 470
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/428 (30%), Positives = 214/428 (50%), Gaps = 37/428 (8%)
Query: 2 VRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDT 61
+RGLV+D K GNILK+ R+ ++++YHG +++S ++ + Y + + +P+Y IDT
Sbjct: 69 IRGLVIDSKNGNILKLSRYGAIRLSYHGTKQISFSDQKKIYRSIYV--DLGDPNYMAIDT 126
Query: 62 LFSLAEAYLFAQLVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKT 121
FS+A L+ QLVD D NP K Y + +DV+ VD H DGTLK ++ K+ K
Sbjct: 127 SFSIAFCILYGQLVDLKDTNP---DKMPSYQAIAQDVQYCVDKVHSDGTLKNIIIKNLKK 183
Query: 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYF 181
Y+ ++ +V LK G+ F++TNS + Y+ +++++ S LD G W F
Sbjct: 184 YVIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYAL-SPFLDKG----EHWQGLF 238
Query: 182 DVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCR 241
+ VIT + KP FF+++ R V PE+G + N G I PG
Sbjct: 239 EFVITLANKPRFFYDNLR--FLSVNPENGTMTNVH--------GPIVPG----------- 277
Query: 242 IFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXXXXXXXXXXXXX 301
++QGG+ + L + ++LY+GDHIYGDILR KK WRT
Sbjct: 278 VYQGGNAKKFTEDLGV-GGDEILYIGDHIYGDILRLKKDCNWRT----ALVVEELGEEIA 332
Query: 302 XXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSH 361
E I+ ++ L + ID Q + + DL+ Q L
Sbjct: 333 SQIRALPIEKKIGEAMAIKKELEQKYVDLCTRSIDESSQ-QYDQEIHDLQLQISTVDLQI 391
Query: 362 QEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLYSPDKYYRPSEG 421
+E + ++ W ++ + G + S FA+QV+RFAC+Y ++S+L +SP Y+R +
Sbjct: 392 SRLLQEQNSFYNPKWERVFRAGAEESYFAYQVDRFACIYMEKLSDLLEHSPMTYFRANRR 451
Query: 422 FMPHEFEI 429
+ H+ +I
Sbjct: 452 LLAHDIDI 459
>pdb|2JCM|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Beryllium Trifluoride
pdb|2XJF|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii With A Covalently Modified Asn52
Length = 555
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 203/437 (46%), Gaps = 58/437 (13%)
Query: 2 VRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDYALID 60
RGLV D GN+LK+D + + V HGF + E E Y N I RD D + +++
Sbjct: 116 TRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERFYILN 173
Query: 61 TLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHRDGTL 111
TLF+L E YL A LVDF N P S T Y M++DVR AVD H G+L
Sbjct: 174 TLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSL 233
Query: 112 KQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHTLDGG 170
K+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H G
Sbjct: 234 KEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHGPKPG 292
Query: 171 ITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPG 230
+ + W YFD+++ + KP FF E L QV+ ++G L GT G + G
Sbjct: 293 -SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL---KIGT---YTGPLQHG 343
Query: 231 LLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXX 290
+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 344 I----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFGDILKSKKRQGWRTF---- 388
Query: 291 XXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDL 350
++ + +++ L L +D R D
Sbjct: 389 ----------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDIS 436
Query: 351 EYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLY 410
QR +++H C + + G L ++G + + FA QV R+A LY + NL LY
Sbjct: 437 SIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LY 489
Query: 411 SPDKY-YRPSEGFMPHE 426
P Y +R + MPHE
Sbjct: 490 YPFSYLFRAAHVLMPHE 506
>pdb|2XJE|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Uridine
5'-Monophosphate And Adenosine Triphosphate
Length = 555
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 203/437 (46%), Gaps = 58/437 (13%)
Query: 2 VRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDYALID 60
RGLV D GN+LK+D + + V HGF + E E Y N I RD D + +++
Sbjct: 116 TRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERFYILN 173
Query: 61 TLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHRDGTL 111
TLF+L E YL A LVDF N P S T Y M++DVR AVD H G+L
Sbjct: 174 TLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSL 233
Query: 112 KQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHTLDGG 170
K+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H G
Sbjct: 234 KEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHGPKPG 292
Query: 171 ITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPG 230
+ + W YFD+++ + KP FF E L QV+ ++G L GT G + G
Sbjct: 293 -SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL---KIGT---YTGPLQHG 343
Query: 231 LLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXX 290
+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 344 I----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFGDILKSKKRQGWRTF---- 388
Query: 291 XXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDL 350
++ + +++ L L +D R D
Sbjct: 389 ----------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDIS 436
Query: 351 EYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLY 410
QR +++H C + + G L ++G + + FA QV R+A LY + NL LY
Sbjct: 437 SIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LY 489
Query: 411 SPDKY-YRPSEGFMPHE 426
P Y +R + MPHE
Sbjct: 490 YPFSYLFRAAHVLMPHE 506
>pdb|2J2C|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii
(Nt5c2, Cn-Ii)
pdb|2JC9|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Ii In
Complex With Adenosine
pdb|4H4B|A Chain A, Human Cytosolic 5'-nucleotidase Ii In Complex With
Anthraquinone-2,6- Disulfonic Acid
Length = 555
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 203/437 (46%), Gaps = 58/437 (13%)
Query: 2 VRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDYALID 60
RGLV D GN+LK+D + + V HGF + E E Y N I RD D + +++
Sbjct: 116 TRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERFYILN 173
Query: 61 TLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHRDGTL 111
TLF+L E YL A LVDF N P S T Y M++DVR AVD H G+L
Sbjct: 174 TLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSL 233
Query: 112 KQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHTLDGG 170
K+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H G
Sbjct: 234 KEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHGPKPG 292
Query: 171 ITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPG 230
+ + W YFD+++ + KP FF E L QV+ ++G L GT G + G
Sbjct: 293 -SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL---KIGT---YTGPLQHG 343
Query: 231 LLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXX 290
+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 344 I----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFGDILKSKKRQGWRTF---- 388
Query: 291 XXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDL 350
++ + +++ L L +D R D
Sbjct: 389 ----------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDIS 436
Query: 351 EYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLY 410
QR +++H C + + G L ++G + + FA QV R+A LY + NL LY
Sbjct: 437 SIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LY 489
Query: 411 SPDKY-YRPSEGFMPHE 426
P Y +R + MPHE
Sbjct: 490 YPFSYLFRAAHVLMPHE 506
>pdb|2XCV|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inosine Monophosphate
And 2,3-Bisphosphoglycerate
pdb|2XCW|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Inosine Monophosphate
And Atp
pdb|2XCX|A Chain A, Crystal Structure Of The Apoform Of The D52n Variant Of
Cytosolic 5'- Nucleotidase Ii
pdb|2XJB|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Deoxyguanosine
Monophosphate And Deoxyadenosine Triphosphate
pdb|2XJC|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic
5'-Nucleotidase Ii In Complex With Guanosine
Monophosphate And Diadenosine Tetraphosphate
pdb|2XJD|A Chain A, Crystal Structure Of The D52n Variant Of Cytosolic 5'-
Nucleotidase Ii In Complex With Inorganic Phosphate And
Deoxyadenosine Triphosphate
Length = 554
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 203/437 (46%), Gaps = 58/437 (13%)
Query: 2 VRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLI-RDAFDEPDYALID 60
RGLV D GN+LK+D + + V HGF + E E Y N I RD D + +++
Sbjct: 115 TRGLVFDTLYGNLLKVDAYGNLLVCAHGFNFIRGPETREQYPNKFIQRD--DTERFYILN 172
Query: 61 TLFSLAEAYLFAQLVDFMDNNPGKDSKST---------DYVRMYKDVRAAVDLCHRDGTL 111
TLF+L E YL A LVDF N P S T Y M++DVR AVD H G+L
Sbjct: 173 TLFNLPETYLLACLVDFFTNCPRYTSCETGFKDGDLFMSYRSMFQDVRDAVDWVHYKGSL 232
Query: 112 KQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG-SHTLDGG 170
K+ ++ + Y+ +D + +L ++E G+ FL TNS + YT +M +L H G
Sbjct: 233 KEKTVENLEKYVVKDGKLPLLLSRMKEVGK-VFLATNSDYKYTDKIMTYLFDFPHGPKPG 291
Query: 171 ITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPG 230
+ + W YFD+++ + KP FF E L QV+ ++G L GT G + G
Sbjct: 292 -SSHRPWQSYFDLILVDARKPLFFGEGTV--LRQVDTKTGKL---KIGT---YTGPLQHG 342
Query: 231 LLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMXXXX 290
+ ++ GGS + LL + +LY+GDHI+GDIL+SKK GWRT
Sbjct: 343 I----------VYSGGSSDTICDLLGAKGK-DILYIGDHIFGDILKSKKRQGWRTF---- 387
Query: 291 XXXXXXXXXXXXXXXXXXXXXXXNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDL 350
++ + +++ L L +D R D
Sbjct: 388 ----------LVIPELAQELHVWTDKSSLFEELQSLDIFLAELYKHLDSSSN--ERPDIS 435
Query: 351 EYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVSNLSLY 410
QR +++H C + + G L ++G + + FA QV R+A LY + NL LY
Sbjct: 436 SIQRRIKKVTHDMDM--C----YGMMGSLFRSGSRQTLFASQVMRYADLYAASFINL-LY 488
Query: 411 SPDKY-YRPSEGFMPHE 426
P Y +R + MPHE
Sbjct: 489 YPFSYLFRAAHVLMPHE 505
>pdb|3W01|A Chain A, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W01|B Chain B, Crystal Structure Of Pcrb Complexed With Peg From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|A Chain A, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
pdb|3W02|B Chain B, Crystal Structure Of Pcrb Complexed With So4 From
Staphylococcus Aureus Subsp. Aureus Mu3
Length = 235
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 225 GDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281
GD+S + E ++F GG + + + + + + VGD IY DI ++ K +
Sbjct: 172 GDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTV 228
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 158 MNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE---PESGMLLN 214
+ L G TLDG + D +FD TG PGFF + + E ESG+ N
Sbjct: 478 LGTLSGIGTLDGFRHRHPDEAAFFDTASTGKTFPGFFSPMLGEFVSETESRGSESGIFTN 537
Query: 215 T 215
T
Sbjct: 538 T 538
>pdb|1FP8|A Chain A, Structure Of The Amylomaltase From Thermus Thermophilus
Hb8 In Space Group P21212
pdb|1FP9|A Chain A, Structure Of Amylomaltase From Thermus Thermophilus Hb8 In
Space Group C2
Length = 500
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 13 NILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTL 62
+L + +K A+ GF+E + E+ EA+ R+A+ DYAL L
Sbjct: 98 GLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMAL 147
>pdb|2OWC|A Chain A, Structure Of A Covalent Intermediate In Thermus
Thermophilus Amylomaltase
pdb|2OWW|A Chain A, Covalent Intermediate In Amylomaltase In Complex With The
Acceptor Analog 4-Deoxyglucose
pdb|2OWX|A Chain A, Thermus Thermophilus Amylomaltase At Ph 5.6
Length = 502
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 13 NILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTL 62
+L + +K A+ GF+E + E+ EA+ R+A+ DYAL L
Sbjct: 101 GLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMAL 150
>pdb|1CWY|A Chain A, Crystal Structure Of Amylomaltase From Thermus Aquaticus,
A Glycosyltransferase Catalysing The Production Of Large
Cyclic Glucans
pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Amylomaltase From
Thermus Aquaticus. Implications For The Synthesis Of
Large Cyclic Glucans
Length = 500
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 13 NILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTL 62
+L + +K A+ GF+E + E+ EA+ R+A+ DYAL L
Sbjct: 98 GLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMAL 147
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 221 MPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS 260
+P++ ++ +L K++NG + +GG + H+H I S
Sbjct: 287 LPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 221 MPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS 260
+P++ ++ +L K++NG + +GG + H+H I S
Sbjct: 287 LPEMTKVAIEMLTKDENGFFLLVEGGRIDHMHHANQIRQS 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,014,905
Number of Sequences: 62578
Number of extensions: 529336
Number of successful extensions: 1152
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1104
Number of HSP's gapped (non-prelim): 22
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)