Query 014030
Match_columns 432
No_of_seqs 130 out of 290
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 01:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05761 5_nucleotid: 5' nucle 100.0 8E-125 2E-129 977.5 26.5 382 1-429 63-446 (448)
2 KOG2470 Similar to IMP-GMP spe 100.0 2E-108 4E-113 809.6 20.1 371 2-429 116-494 (510)
3 TIGR02244 HAD-IG-Ncltidse HAD 100.0 6.6E-83 1.4E-87 643.6 26.3 280 1-308 63-342 (343)
4 KOG2469 IMP-GMP specific 5'-nu 100.0 1.3E-83 2.8E-88 646.3 20.7 348 1-402 77-424 (424)
5 TIGR02253 CTE7 HAD superfamily 98.5 2.6E-07 5.5E-12 86.9 7.5 107 120-290 90-196 (221)
6 PF13419 HAD_2: Haloacid dehal 98.3 3.9E-06 8.5E-11 74.2 9.2 105 119-288 72-176 (176)
7 TIGR01509 HAD-SF-IA-v3 haloaci 98.2 8.1E-06 1.8E-10 73.8 9.9 111 110-288 73-183 (183)
8 TIGR01428 HAD_type_II 2-haloal 98.2 3.7E-06 8E-11 78.1 7.2 103 124-291 92-194 (198)
9 PRK13226 phosphoglycolate phos 98.1 1.8E-05 3.9E-10 75.8 9.0 104 121-289 92-195 (229)
10 PLN02770 haloacid dehalogenase 98.0 1.4E-05 3.1E-10 77.6 8.2 103 122-289 106-208 (248)
11 TIGR01454 AHBA_synth_RP 3-amin 98.0 9.3E-06 2E-10 75.9 6.1 103 122-289 73-175 (205)
12 PRK09449 dUMP phosphatase; Pro 98.0 1.4E-05 3.1E-10 75.4 6.9 104 123-290 94-197 (224)
13 PRK09456 ?-D-glucose-1-phospha 98.0 8.6E-06 1.9E-10 76.1 5.3 104 123-290 83-186 (199)
14 PLN03243 haloacid dehalogenase 98.0 1.9E-05 4.1E-10 77.8 7.8 102 123-289 108-209 (260)
15 TIGR01449 PGP_bact 2-phosphogl 98.0 2.8E-05 6.2E-10 72.5 8.6 107 118-289 79-185 (213)
16 PRK14988 GMP/IMP nucleotidase; 97.9 1.5E-05 3.2E-10 76.4 5.7 104 123-291 92-195 (224)
17 TIGR02252 DREG-2 REG-2-like, H 97.9 1.5E-05 3.3E-10 74.1 5.5 99 124-287 105-203 (203)
18 TIGR01662 HAD-SF-IIIA HAD-supe 97.9 3.3E-05 7.1E-10 67.3 7.2 103 120-290 21-132 (132)
19 PRK13288 pyrophosphatase PpaX; 97.9 5.7E-05 1.2E-09 71.1 8.4 103 123-290 81-183 (214)
20 cd01427 HAD_like Haloacid deha 97.8 3.6E-05 7.7E-10 64.7 6.2 117 123-288 23-139 (139)
21 PLN02575 haloacid dehalogenase 97.8 0.0002 4.4E-09 74.4 11.8 103 124-291 216-318 (381)
22 TIGR01422 phosphonatase phosph 97.8 4E-05 8.6E-10 74.2 6.3 104 123-290 98-202 (253)
23 TIGR03351 PhnX-like phosphonat 97.8 3.7E-05 8.1E-10 72.4 5.8 106 124-292 87-194 (220)
24 TIGR01990 bPGM beta-phosphoglu 97.8 2.6E-05 5.7E-10 71.0 4.6 98 124-288 87-184 (185)
25 TIGR02247 HAD-1A3-hyp Epoxide 97.8 3.9E-05 8.5E-10 71.9 5.9 101 123-290 93-197 (211)
26 PRK13225 phosphoglycolate phos 97.8 5.1E-05 1.1E-09 75.3 6.9 102 123-292 141-242 (273)
27 PRK10826 2-deoxyglucose-6-phos 97.7 9.5E-05 2.1E-09 70.0 8.0 104 123-291 91-194 (222)
28 PLN02779 haloacid dehalogenase 97.7 5.3E-05 1.1E-09 75.5 6.5 105 123-290 143-247 (286)
29 TIGR02254 YjjG/YfnB HAD superf 97.7 7.3E-05 1.6E-09 70.0 6.8 104 123-291 96-200 (224)
30 COG2179 Predicted hydrolase of 97.7 5.5E-05 1.2E-09 69.8 5.3 96 126-294 48-143 (175)
31 TIGR01691 enolase-ppase 2,3-di 97.7 6.7E-05 1.4E-09 72.4 6.0 118 109-292 80-199 (220)
32 TIGR01993 Pyr-5-nucltdase pyri 97.6 7.8E-05 1.7E-09 68.5 5.3 103 122-288 82-184 (184)
33 COG1011 Predicted hydrolase (H 97.6 0.00015 3.2E-09 68.2 7.0 107 122-293 97-203 (229)
34 TIGR02009 PGMB-YQAB-SF beta-ph 97.6 0.00017 3.6E-09 65.7 6.9 100 122-288 86-185 (185)
35 PRK13222 phosphoglycolate phos 97.6 0.0002 4.2E-09 67.3 7.3 103 123-290 92-194 (226)
36 PRK13223 phosphoglycolate phos 97.5 0.00036 7.9E-09 68.9 8.8 103 123-290 100-202 (272)
37 TIGR01668 YqeG_hyp_ppase HAD s 97.5 0.00017 3.8E-09 66.3 5.9 42 250-293 99-140 (170)
38 PLN02940 riboflavin kinase 97.5 0.00025 5.3E-09 73.7 7.7 103 124-290 93-195 (382)
39 TIGR01685 MDP-1 magnesium-depe 97.5 0.00015 3.2E-09 67.6 5.2 110 126-291 47-159 (174)
40 PLN02811 hydrolase 97.5 0.00028 6E-09 67.0 7.2 103 126-290 80-185 (220)
41 PRK13478 phosphonoacetaldehyde 97.4 0.0006 1.3E-08 66.7 8.9 104 123-290 100-204 (267)
42 PRK11587 putative phosphatase; 97.4 0.00045 9.7E-09 65.4 7.1 102 123-290 82-183 (218)
43 PRK10748 flavin mononucleotide 97.4 0.00019 4.2E-09 69.1 4.5 99 123-291 112-210 (238)
44 PRK10725 fructose-1-P/6-phosph 97.2 0.00043 9.3E-09 63.4 4.9 94 129-288 92-185 (188)
45 PRK06698 bifunctional 5'-methy 97.2 0.00074 1.6E-08 71.5 7.1 98 125-290 331-428 (459)
46 TIGR01261 hisB_Nterm histidino 97.1 0.00097 2.1E-08 61.2 6.2 107 122-290 27-148 (161)
47 TIGR01549 HAD-SF-IA-v1 haloaci 97.1 0.00099 2.1E-08 59.1 5.8 47 126-187 66-112 (154)
48 TIGR01656 Histidinol-ppas hist 97.0 0.0031 6.7E-08 56.4 8.3 39 248-289 107-145 (147)
49 PRK08942 D,D-heptose 1,7-bisph 97.0 0.0016 3.5E-08 60.0 6.7 38 250-290 111-148 (181)
50 PRK06769 hypothetical protein; 97.0 0.00098 2.1E-08 61.5 5.2 41 249-292 100-140 (173)
51 KOG3085 Predicted hydrolase (H 96.9 0.00066 1.4E-08 66.3 3.2 101 119-289 109-213 (237)
52 TIGR00213 GmhB_yaeD D,D-heptos 96.8 0.0034 7.3E-08 57.7 7.3 27 125-151 27-53 (176)
53 PRK10563 6-phosphogluconate ph 96.8 0.0013 2.8E-08 62.1 4.1 97 121-289 85-186 (221)
54 TIGR01548 HAD-SF-IA-hyp1 haloa 96.7 0.0034 7.4E-08 58.4 6.4 46 129-188 111-156 (197)
55 TIGR01664 DNA-3'-Pase DNA 3'-p 96.3 0.011 2.4E-07 54.4 6.6 36 117-152 35-70 (166)
56 PLN02919 haloacid dehalogenase 96.1 0.0099 2.1E-07 69.5 6.5 103 125-292 162-265 (1057)
57 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.0 0.0014 2.9E-08 64.4 -0.6 102 128-291 124-226 (257)
58 PRK05446 imidazole glycerol-ph 96.0 0.02 4.3E-07 59.2 7.6 110 123-290 29-149 (354)
59 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.6 0.04 8.6E-07 50.6 7.4 38 124-161 80-117 (201)
60 PHA02597 30.2 hypothetical pro 95.5 0.023 5E-07 52.6 5.4 101 123-291 73-176 (197)
61 TIGR00338 serB phosphoserine p 95.1 0.054 1.2E-06 50.8 6.4 39 123-161 84-122 (219)
62 TIGR01452 PGP_euk phosphoglyco 95.1 0.0064 1.4E-07 60.1 0.1 37 251-289 211-247 (279)
63 PRK09552 mtnX 2-hydroxy-3-keto 94.8 0.14 3.1E-06 48.5 8.6 40 123-162 73-112 (219)
64 TIGR01681 HAD-SF-IIIC HAD-supe 94.7 0.024 5.2E-07 49.7 2.8 59 126-191 31-90 (128)
65 COG0647 NagD Predicted sugar p 94.7 0.2 4.4E-06 50.0 9.6 31 261-292 208-238 (269)
66 TIGR01686 FkbH FkbH-like domai 94.6 0.055 1.2E-06 54.7 5.5 48 127-187 34-84 (320)
67 PLN02954 phosphoserine phospha 94.5 0.22 4.8E-06 46.9 9.1 37 125-161 85-121 (224)
68 TIGR01459 HAD-SF-IIA-hyp4 HAD- 94.5 0.012 2.7E-07 56.8 0.5 38 251-289 204-241 (242)
69 PF09419 PGP_phosphatase: Mito 94.3 0.18 3.8E-06 47.0 7.7 29 259-288 135-163 (168)
70 KOG3109 Haloacid dehalogenase- 94.2 0.095 2.1E-06 50.8 5.9 161 72-292 39-208 (244)
71 TIGR01684 viral_ppase viral ph 94.1 0.1 2.2E-06 52.7 6.0 68 107-193 133-201 (301)
72 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.5 0.25 5.3E-06 45.7 7.2 36 126-161 89-124 (202)
73 PHA03398 viral phosphatase sup 93.3 0.17 3.6E-06 51.3 6.0 66 107-191 135-201 (303)
74 TIGR03333 salvage_mtnX 2-hydro 93.3 0.66 1.4E-05 43.8 9.8 59 101-161 49-107 (214)
75 TIGR01493 HAD-SF-IA-v2 Haloaci 93.2 0.043 9.2E-07 49.6 1.5 42 124-186 90-131 (175)
76 TIGR02726 phenyl_P_delta pheny 93.1 0.064 1.4E-06 49.7 2.5 31 131-161 41-71 (169)
77 COG0546 Gph Predicted phosphat 92.9 0.34 7.3E-06 46.2 7.3 103 122-289 87-189 (220)
78 PF00702 Hydrolase: haloacid d 92.8 0.15 3.3E-06 46.8 4.7 37 126-163 129-165 (215)
79 PF13242 Hydrolase_like: HAD-h 92.7 0.088 1.9E-06 41.7 2.4 44 248-293 10-53 (75)
80 smart00577 CPDc catalytic doma 91.7 0.41 8.9E-06 42.8 5.9 54 121-188 42-95 (148)
81 TIGR01670 YrbI-phosphatas 3-de 91.5 0.14 3E-06 46.3 2.6 30 132-161 36-65 (154)
82 TIGR01489 DKMTPPase-SF 2,3-dik 91.4 0.57 1.2E-05 42.3 6.6 51 123-187 71-121 (188)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 91.0 0.38 8.3E-06 46.4 5.3 50 125-188 25-77 (242)
84 PRK11009 aphA acid phosphatase 90.8 0.72 1.6E-05 45.2 7.0 67 110-188 100-170 (237)
85 TIGR01672 AphA HAD superfamily 89.0 1 2.3E-05 44.0 6.6 54 120-187 110-167 (237)
86 TIGR01457 HAD-SF-IIA-hyp2 HAD- 88.4 0.34 7.3E-06 47.3 2.7 39 251-291 187-225 (249)
87 TIGR02250 FCP1_euk FCP1-like p 88.1 1.1 2.3E-05 41.0 5.6 43 118-161 52-94 (156)
88 PF13344 Hydrolase_6: Haloacid 86.6 1.1 2.4E-05 37.8 4.5 36 126-161 16-51 (101)
89 PTZ00445 p36-lilke protein; Pr 85.9 0.82 1.8E-05 44.3 3.7 143 100-290 52-206 (219)
90 PRK09484 3-deoxy-D-manno-octul 85.9 0.65 1.4E-05 43.1 3.0 31 131-161 55-85 (183)
91 PRK11590 hypothetical protein; 85.2 4.1 8.9E-05 38.4 8.1 39 123-161 94-133 (211)
92 PRK11133 serB phosphoserine ph 85.0 2.8 6.1E-05 42.8 7.3 38 123-160 180-217 (322)
93 PHA02530 pseT polynucleotide k 84.8 0.95 2.1E-05 44.7 3.7 56 126-194 189-244 (300)
94 PLN02645 phosphoglycolate phos 84.6 0.65 1.4E-05 46.8 2.4 37 252-290 240-276 (311)
95 TIGR01456 CECR5 HAD-superfamil 84.5 0.54 1.2E-05 47.7 1.9 29 261-290 264-292 (321)
96 TIGR01663 PNK-3'Pase polynucle 84.5 2 4.4E-05 46.9 6.3 36 116-151 189-224 (526)
97 TIGR02251 HIF-SF_euk Dullard-l 84.2 2 4.3E-05 39.2 5.3 55 118-186 36-90 (162)
98 PF06888 Put_Phosphatase: Puta 83.6 13 0.00028 36.5 10.9 57 123-196 70-128 (234)
99 TIGR01460 HAD-SF-IIA Haloacid 82.7 0.9 1.9E-05 43.9 2.5 38 250-289 196-234 (236)
100 PF05152 DUF705: Protein of un 81.7 2.9 6.3E-05 42.2 5.6 66 117-196 135-200 (297)
101 TIGR01488 HAD-SF-IB Haloacid D 81.6 2.4 5.2E-05 38.0 4.7 41 121-161 70-110 (177)
102 PRK10444 UMP phosphatase; Prov 80.7 1.2 2.6E-05 43.6 2.6 38 251-290 183-220 (248)
103 PRK08238 hypothetical protein; 75.8 4.5 9.9E-05 43.6 5.4 45 126-187 74-118 (479)
104 PLN02645 phosphoglycolate phos 75.0 4.4 9.6E-05 40.8 4.8 47 107-161 35-81 (311)
105 COG0731 Fe-S oxidoreductases [ 74.1 3 6.4E-05 42.3 3.3 46 126-191 94-140 (296)
106 PF08645 PNK3P: Polynucleotide 72.1 3.7 8E-05 37.5 3.1 34 116-149 21-54 (159)
107 PRK13582 thrH phosphoserine ph 66.8 14 0.00031 33.9 6.0 38 123-161 67-104 (205)
108 TIGR01458 HAD-SF-IIA-hyp3 HAD- 65.9 8.3 0.00018 37.8 4.4 36 126-161 23-58 (257)
109 COG0637 Predicted phosphatase/ 65.4 6.3 0.00014 37.7 3.3 159 66-290 16-187 (221)
110 TIGR01457 HAD-SF-IIA-hyp2 HAD- 63.4 11 0.00024 36.6 4.7 24 127-150 20-43 (249)
111 TIGR01544 HAD-SF-IE haloacid d 63.1 56 0.0012 32.9 9.7 39 123-161 120-158 (277)
112 smart00775 LNS2 LNS2 domain. T 60.2 11 0.00024 34.3 3.8 37 126-162 29-65 (157)
113 TIGR03752 conj_TIGR03752 integ 58.5 61 0.0013 35.1 9.4 76 289-373 68-144 (472)
114 PF12710 HAD: haloacid dehalog 57.8 10 0.00023 34.1 3.2 34 127-160 92-125 (192)
115 PRK10444 UMP phosphatase; Prov 57.1 15 0.00031 36.0 4.3 36 126-161 19-54 (248)
116 TIGR02137 HSK-PSP phosphoserin 56.7 16 0.00034 34.7 4.4 37 124-161 68-104 (203)
117 PF00834 Ribul_P_3_epim: Ribul 55.6 32 0.0007 32.8 6.3 51 127-195 92-142 (201)
118 PRK10884 SH3 domain-containing 53.8 77 0.0017 30.5 8.5 75 287-366 93-167 (206)
119 TIGR01675 plant-AP plant acid 51.5 18 0.00038 35.4 3.9 36 128-163 124-159 (229)
120 TIGR01545 YfhB_g-proteo haloac 51.5 20 0.00044 34.0 4.2 38 124-161 94-132 (210)
121 PF10146 zf-C4H2: Zinc finger- 50.5 1.2E+02 0.0025 29.9 9.3 25 343-367 79-103 (230)
122 TIGR01533 lipo_e_P4 5'-nucleot 49.4 42 0.00091 33.5 6.2 36 126-161 120-155 (266)
123 KOG2914 Predicted haloacid-hal 49.2 23 0.00049 34.5 4.2 119 110-290 75-197 (222)
124 PF03031 NIF: NLI interacting 48.2 30 0.00064 30.8 4.5 42 120-162 32-73 (159)
125 COG0560 SerB Phosphoserine pho 47.4 28 0.00061 33.3 4.5 98 62-161 9-114 (212)
126 COG4850 Uncharacterized conser 46.5 28 0.00061 36.0 4.5 62 126-188 198-260 (373)
127 KOG2882 p-Nitrophenyl phosphat 46.0 19 0.0004 36.8 3.1 59 240-299 218-279 (306)
128 COG4359 Uncharacterized conser 45.9 2.6E+02 0.0057 27.0 10.4 58 103-163 55-112 (220)
129 TIGR01689 EcbF-BcbF capsule bi 43.8 47 0.001 29.5 5.0 66 107-188 8-87 (126)
130 TIGR01452 PGP_euk phosphoglyco 39.5 30 0.00066 34.0 3.5 25 126-150 20-44 (279)
131 PRK08883 ribulose-phosphate 3- 39.3 24 0.00052 34.1 2.6 107 126-272 92-200 (220)
132 PF14723 SSFA2_C: Sperm-specif 39.1 2.1E+02 0.0045 27.1 8.5 33 333-369 137-169 (179)
133 PF10146 zf-C4H2: Zinc finger- 38.7 2.3E+02 0.0049 27.8 9.3 22 343-364 65-86 (230)
134 TIGR01512 ATPase-IB2_Cd heavy 38.5 30 0.00066 37.6 3.6 35 127-161 365-400 (536)
135 COG0561 Cof Predicted hydrolas 38.5 35 0.00076 32.9 3.7 35 127-161 23-57 (264)
136 PF12325 TMF_TATA_bd: TATA ele 37.5 2.4E+02 0.0051 24.9 8.4 45 283-327 12-57 (120)
137 TIGR01525 ATPase-IB_hvy heavy 37.5 35 0.00075 37.3 3.8 35 127-161 387-422 (556)
138 TIGR01460 HAD-SF-IIA Haloacid 37.5 47 0.001 31.9 4.4 35 127-161 17-51 (236)
139 COG5610 Predicted hydrolase (H 37.5 94 0.002 33.8 6.8 113 118-293 92-206 (635)
140 COG1907 Predicted archaeal sug 36.3 64 0.0014 32.9 5.1 43 356-398 245-287 (312)
141 PF13304 AAA_21: AAA domain; P 36.0 11 0.00025 33.9 -0.2 38 114-151 261-300 (303)
142 TIGR01484 HAD-SF-IIB HAD-super 34.9 41 0.00089 30.9 3.4 36 125-160 18-53 (204)
143 PF11019 DUF2608: Protein of u 34.7 1.5E+02 0.0032 29.3 7.4 48 116-163 73-120 (252)
144 cd05014 SIS_Kpsf KpsF-like pro 33.8 40 0.00086 28.6 2.9 26 126-151 60-85 (128)
145 PRK08745 ribulose-phosphate 3- 33.3 61 0.0013 31.5 4.4 106 127-272 97-204 (223)
146 PF15290 Syntaphilin: Golgi-lo 33.1 2.6E+02 0.0056 28.4 8.7 9 319-327 106-114 (305)
147 KOG2961 Predicted hydrolase (H 32.4 34 0.00074 31.9 2.3 48 245-293 121-171 (190)
148 PF15342 FAM212: FAM212 family 31.8 20 0.00043 27.8 0.6 23 254-276 31-53 (62)
149 PF13851 GAS: Growth-arrest sp 31.8 3.4E+02 0.0074 25.9 9.1 22 343-364 112-133 (201)
150 KOG2264 Exostosin EXT1L [Signa 31.0 1.2E+02 0.0026 33.8 6.3 91 262-370 56-146 (907)
151 TIGR01680 Veg_Stor_Prot vegeta 30.4 67 0.0014 32.4 4.2 43 121-163 137-184 (275)
152 TIGR02463 MPGP_rel mannosyl-3- 30.2 53 0.0012 30.6 3.4 33 129-161 21-53 (221)
153 TIGR01511 ATPase-IB1_Cu copper 30.1 49 0.0011 36.3 3.5 35 127-161 408-442 (562)
154 PF09802 Sec66: Preprotein tra 29.8 3.4E+02 0.0074 26.0 8.6 25 356-381 122-146 (190)
155 COG0241 HisB Histidinol phosph 29.0 53 0.0011 31.1 3.0 27 122-148 23-55 (181)
156 COG4308 LimA Limonene-1,2-epox 27.9 15 0.00033 32.6 -0.7 12 172-183 108-119 (130)
157 PRK08091 ribulose-phosphate 3- 27.7 92 0.002 30.5 4.6 106 127-272 103-212 (228)
158 PRK08005 epimerase; Validated 27.3 97 0.0021 29.9 4.6 101 127-272 93-196 (210)
159 TIGR00099 Cof-subfamily Cof su 27.1 73 0.0016 30.5 3.8 34 126-159 18-51 (256)
160 TIGR03185 DNA_S_dndD DNA sulfu 26.2 2.2E+02 0.0048 31.8 7.9 24 349-372 266-289 (650)
161 PF08654 DASH_Dad2: DASH compl 25.6 2.3E+02 0.0051 24.3 6.1 22 374-398 52-73 (103)
162 cd08557 PI-PLCc_bacteria_like 25.1 48 0.001 32.0 2.1 73 65-151 79-161 (271)
163 PF10018 Med4: Vitamin-D-recep 24.8 4.1E+02 0.009 24.8 8.3 11 389-399 89-99 (188)
164 PF00571 CBS: CBS domain CBS d 23.9 1.1E+02 0.0025 21.7 3.5 40 114-153 3-42 (57)
165 cd05008 SIS_GlmS_GlmD_1 SIS (S 23.9 70 0.0015 26.9 2.7 26 127-152 60-85 (126)
166 TIGR01482 SPP-subfamily Sucros 23.6 95 0.0021 28.8 3.8 35 127-161 18-52 (225)
167 PF11932 DUF3450: Protein of u 23.6 5E+02 0.011 25.3 8.9 27 343-369 89-115 (251)
168 PF14257 DUF4349: Domain of un 23.5 5E+02 0.011 25.3 9.0 57 304-368 136-192 (262)
169 TIGR02338 gimC_beta prefoldin, 23.3 4.6E+02 0.01 22.2 9.1 31 343-373 79-109 (110)
170 COG1579 Zn-ribbon protein, pos 22.9 6.4E+02 0.014 25.0 9.4 68 292-372 94-162 (239)
171 PF00038 Filament: Intermediat 22.5 6.5E+02 0.014 24.9 9.8 62 305-372 228-289 (312)
172 KOG1937 Uncharacterized conser 22.5 1.2E+02 0.0027 32.6 4.6 41 345-385 403-443 (521)
173 COG0036 Rpe Pentose-5-phosphat 22.4 1.4E+02 0.003 29.2 4.7 52 126-195 95-146 (220)
174 PRK00192 mannosyl-3-phosphogly 22.2 92 0.002 30.4 3.5 35 127-161 24-58 (273)
175 PF08282 Hydrolase_3: haloacid 22.0 88 0.0019 28.7 3.2 34 126-159 17-50 (254)
176 PF03767 Acid_phosphat_B: HAD 21.8 81 0.0017 30.5 3.0 38 126-163 117-154 (229)
177 PF01380 SIS: SIS domain SIS d 21.4 81 0.0018 26.4 2.6 30 127-156 67-96 (131)
178 TIGR01487 SPP-like sucrose-pho 21.2 1.1E+02 0.0024 28.4 3.7 34 126-159 20-53 (215)
179 COG2841 Uncharacterized protei 20.9 4.6E+02 0.0099 21.2 7.0 67 290-368 3-69 (72)
180 PF04111 APG6: Autophagy prote 20.2 6.5E+02 0.014 25.7 9.2 38 290-327 46-84 (314)
181 PF12689 Acid_PPase: Acid Phos 20.2 1.8E+02 0.0039 27.1 4.8 36 126-161 47-83 (169)
182 PRK01158 phosphoglycolate phos 20.2 1.2E+02 0.0025 28.3 3.6 35 126-160 22-56 (230)
No 1
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=100.00 E-value=7.8e-125 Score=977.45 Aligned_cols=382 Identities=45% Similarity=0.758 Sum_probs=308.5
Q ss_pred CccccEeecCCCeEEeecCCCceEEEeccCccCchhHHHHHhCCeecccCCCCCCeeeeccccchHHHHHHHHHHHHHh-
Q 014030 1 MVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMD- 79 (432)
Q Consensus 1 ~iRGL~~D~~~GnlLKld~~g~I~~a~hG~~~l~~eEi~~~Y~~~~i~~~~~~~~~~~l~tlFslpe~~L~a~lVd~~d- 79 (432)
+||||+||+++|||||||++|+|++||||+++|+.|||.++||+++++..+.. +|..++|+||+||+||||++||+|+
T Consensus 63 ~iRGL~~D~~~GnlLKld~~g~I~~a~hG~~~l~~eei~~~Y~~~~i~~~~~~-~~~~l~tlFslpe~~L~a~lvd~~d~ 141 (448)
T PF05761_consen 63 AIRGLVIDKERGNLLKLDRFGYILRAYHGFRPLSDEEIRELYGNKFIPLSDDS-RFFQLNTLFSLPEAYLFAQLVDYFDV 141 (448)
T ss_dssp --TTEEEETTTTEEEEEBTTSBEEEEEETTEEE-HHHHCCCCTTSB--TTSTT-TEEEE-SCCHHHHHHHHHHHHHHHHE
T ss_pred hhcceeeEcccCeEEEEcCCCcEEEEEeccccCCHHHHHHhcCCcccccchhh-HHHHHhhHhhhhHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999864444 8999999999999999999999999
Q ss_pred -cCCCCCCCCCChHHHHHHHHHHHHHhhcchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHH
Q 014030 80 -NNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVM 158 (432)
Q Consensus 80 -~~~~~~~~~~~y~~l~~DV~~av~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M 158 (432)
.+... .+|.+||+||++||++||.+|.||++|++||+|||+|+|+|++||++||++||||||||||+|+|||.+|
T Consensus 142 ~~~~~~----~~~~~l~~DV~~Avd~~H~~G~lk~~v~~dp~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M 217 (448)
T PF05761_consen 142 EDGNIE----YDYRSLYQDVRDAVDHVHRDGSLKREVKEDPEKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVM 217 (448)
T ss_dssp CCTTCC----EEHHHHHHHHHHHHHHHHHCSCHHHHHHTTCCCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHH
T ss_pred ccCCCC----CCHHHHHHHHHHHHHHHhcchHHHHHHHHCHHHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhh
Confidence 44332 4799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCC
Q 014030 159 NFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNG 238 (432)
Q Consensus 159 ~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~ 238 (432)
+|++|+++ +.++|||||||||||+|+||+||+++ +|||+|+++||.+.++. .++ +++
T Consensus 218 ~yl~g~~~-----~~~~dW~dlFDvVIv~A~KP~FF~~~--~pfr~vd~~~g~l~~~~------~~~----------~l~ 274 (448)
T PF05761_consen 218 SYLLGPFL-----GEDPDWRDLFDVVIVDARKPGFFTEG--RPFREVDTETGKLKWGK------YVG----------PLE 274 (448)
T ss_dssp HHHCGCCS-----STTT-GGGCECEEEES--CCHHHCT-----EEEEETTTSSEECS---------S----------S--
T ss_pred hhccCCCC-----CCCCChhhheeEEEEcCCCCcccCCC--CceEEEECCCCcccccc------ccc----------ccc
Confidence 99999765 44569999999999999999999995 59999999999987652 233 459
Q ss_pred CCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHhhHHH
Q 014030 239 TCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDL 318 (432)
Q Consensus 239 ~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~ 318 (432)
+|+||+|||+.+|++++|| +|++||||||||||||++||+.+||||+|||||||+||++|++.++.+++|+.|+.++++
T Consensus 275 ~g~vY~gGn~~~l~~ll~~-~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~ 353 (448)
T PF05761_consen 275 KGKVYSGGNWDQLHKLLGW-RGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPELEQEIEIWNSKKYRFEELQELEELLEE 353 (448)
T ss_dssp TC-EEEE--HHHHHHHCT---GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTHHHHHHHHHHTHHHHHHHHHHHHHCHH
T ss_pred CCCEeecCCHHHHHHHHcc-CCCeEEEECCchhhhhhhhccccceEEEEEehhhhhhhhhhhhcchhhhHHHHHHHHHHH
Confidence 9999999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccccccCCccchhhhhhhcccc
Q 014030 319 IEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFAC 398 (432)
Q Consensus 319 l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~ryAd 398 (432)
+++.+++++ ..++++..++++++.++++.+++++.|||+|||+||||+++|+||+||+||||
T Consensus 354 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~fn~~~GslfRtg~~~s~Fa~qv~RyAd 415 (448)
T PF05761_consen 354 LQDHLDQLR------------------SSSELRPDISELRKERRELRREMKELFNPQFGSLFRTGHNPSYFARQVERYAD 415 (448)
T ss_dssp HHCHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHCTT-TTT-BSSEETTEEBHHHHHHHHH-S
T ss_pred HHHHhcccc------------------cchhhHHHHHHHHHHHHHHHHHHhhhcccchHHHHhcCCCccHHHHHHHHHhh
Confidence 888776443 22233344444555555555666799999999999999999999999999999
Q ss_pred cccccccccccCCCCcccccCCCCCCCCCCC
Q 014030 399 LYTSQVSNLSLYSPDKYYRPSEGFMPHEFEI 429 (432)
Q Consensus 399 lYtS~v~NLl~y~~~~~F~~~~~~lpHE~~~ 429 (432)
||||+|+||++|||+|+|||++++||||+++
T Consensus 416 lYtS~v~Nll~y~~~~~Fr~~~~~lpHE~~~ 446 (448)
T PF05761_consen 416 LYTSSVSNLLNYSPNYYFRPPRDLLPHESTV 446 (448)
T ss_dssp EEESSHHHHHHS-TT-EE-------CCG---
T ss_pred hhhccccHHHhCCcceEEeCCCCCCCCCCCC
Confidence 9999999999999999999999999999976
No 2
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-108 Score=809.59 Aligned_cols=371 Identities=30% Similarity=0.523 Sum_probs=342.9
Q ss_pred ccccEeecCCCeEEeecCCCceEE--EeccCccCchhHHHHHhCCeecccC----CCC--CCeeeeccccchHHHHHHHH
Q 014030 2 VRGLVLDKKRGNILKMDRHKYVKV--AYHGFREMSKEEKVEAYGNTLIRDA----FDE--PDYALIDTLFSLAEAYLFAQ 73 (432)
Q Consensus 2 iRGL~~D~~~GnlLKld~~g~I~~--a~hG~~~l~~eEi~~~Y~~~~i~~~----~~~--~~~~~l~tlFslpe~~L~a~ 73 (432)
||||++|+++|.|||+|+||+|+. ||+|.++++++||.++||+.+|+.. |.+ +..+.+.++||+||+||+||
T Consensus 116 IRGLhYDv~kglLmKlDaF~~iqlgt~YrGr~kv~~eEvi~mY~~rhipl~q~~g~~~k~~~mvqlmDiFs~pEmcLls~ 195 (510)
T KOG2470|consen 116 IRGLHYDVQKGLLMKLDAFHYIQLGTVYRGRRKVPDEEVIEMYGGRHIPLDQMSGFYGKGSKMVQLMDIFSLPEMCLLSC 195 (510)
T ss_pred cchhhhHhhhhhheeeccceeeccCceeecCccCCHHHHHHHhcCCccCHHHhcCccCCCchHHHHHHHhccHHHHHHHH
Confidence 899999999999999999999995 9999999999999999999999742 222 34556777999999999999
Q ss_pred HHHHHhcCCCCCCCCCChHHHHHHHHHHHHHhhcchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchh
Q 014030 74 LVDFMDNNPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDY 153 (432)
Q Consensus 74 lVd~~d~~~~~~~~~~~y~~l~~DV~~av~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~y 153 (432)
+|+||..++.++. ...+|+||+.|+..||+.|.+ +|.+|.+|||.++|++..+|++|+++|||+||||||||+|
T Consensus 196 vveYF~~~~lefd----~~~ly~Dv~~ai~~vH~~~~~--~i~~~~ekyi~r~~ql~~fl~kL~~~GKklFLiTNSPysF 269 (510)
T KOG2470|consen 196 VVEYFLDNKLEFD----PSHLYKDVNDAIRDVHRKGHM--KIESDLEKYIERNPQLLAFLRKLKDHGKKLFLITNSPYSF 269 (510)
T ss_pred HHHHHHhccccCC----HHHHHHhHHHHHHHhhhhhhH--HHhhchHHHhhccHHHHHHHHHHHHhcCcEEEEeCCchhh
Confidence 9999999999885 479999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccc
Q 014030 154 TTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLL 233 (432)
Q Consensus 154 t~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~ 233 (432)
+|++|+|++| +|||++||||||+|+||.||++. ++||+..|.++|.+ .|++
T Consensus 270 Vd~GM~flvG-----------~~WRdlFDVVIvqA~KP~Fftde-~rPfR~~dek~~sl-----------------~wdk 320 (510)
T KOG2470|consen 270 VDKGMRFLVG-----------DDWRDLFDVVIVQANKPEFFTDE-RRPFRKYDEKRGSL-----------------LWDK 320 (510)
T ss_pred hhcCceeeeC-----------ccHHhhhheeEEecCCCcccccc-cCcchhhcccccch-----------------hhhh
Confidence 9999999999 99999999999999999999995 66887778776654 4888
Q ss_pred cccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHH
Q 014030 234 KEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLR 313 (432)
Q Consensus 234 ~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe~Ei~~~~~~~~~~~~l~~L~ 313 (432)
+..|++|+||.+||..+|.+++|| +|++|||||||+|||++++...+||||+|||||||+||+++|+.. ++....||+
T Consensus 321 v~klekgkiYy~G~l~~flelt~W-rG~~VlYFGDHlySDLad~tlkhgWRTgAII~EL~~Eiki~N~e~-y~~s~~w~q 398 (510)
T KOG2470|consen 321 VDKLEKGKIYYQGNLKSFLELTGW-RGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPELEREIKIQNTEQ-YRFSQTWLQ 398 (510)
T ss_pred hhhcccCceeeeccHHHHHHHhcc-CCCeeEEecCcchhhhhhhHhhcccccccchHHHHHHHhhccHHH-HHHHHHHHH
Confidence 999999999999999999999999 899999999999999999999999999999999999999999755 788999999
Q ss_pred hhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccccccCCccchhhhhh
Q 014030 314 NERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQV 393 (432)
Q Consensus 314 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv 393 (432)
.++.+||+.-. ..+++++.+|++|+++|+++|+.++ ++||.+|||+|||.++||+|++++
T Consensus 399 ~lt~Ller~q~-------------~rseasq~~L~ew~~eRq~lR~~tK-------~~FN~qFGs~FrT~~nptyFsrrl 458 (510)
T KOG2470|consen 399 ILTGLLERMQA-------------QRSEASQSVLDEWMKERQELRDTTK-------QMFNAQFGSTFRTDHNPTYFSRRL 458 (510)
T ss_pred HHHHHHHHHHh-------------hhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhcceeeccCCccHHHHHH
Confidence 99999988422 1123467899999999999999987 789999999999999999999999
Q ss_pred hcccccccccccccccCCCCcccccCCCCCCCCCCC
Q 014030 394 ERFACLYTSQVSNLSLYSPDKYYRPSEGFMPHEFEI 429 (432)
Q Consensus 394 ~ryAdlYtS~v~NLl~y~~~~~F~~~~~~lpHE~~~ 429 (432)
.||||||||+++|||+|++.|+|||+|++||||.++
T Consensus 459 ~rfaDiYts~lsnlL~y~~~htfYprr~~mpHe~~~ 494 (510)
T KOG2470|consen 459 HRFADIYTSSLSNLLNYRVEHTFYPRRTPMPHEVPV 494 (510)
T ss_pred HHHHHHHhccHHHHHhcCcccccCCcCCCCcccccc
Confidence 999999999999999999999999999999999875
No 3
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=100.00 E-value=6.6e-83 Score=643.60 Aligned_cols=280 Identities=45% Similarity=0.775 Sum_probs=255.7
Q ss_pred CccccEeecCCCeEEeecCCCceEEEeccCccCchhHHHHHhCCeecccCCCCCCeeeeccccchHHHHHHHHHHHHHhc
Q 014030 1 MVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMDN 80 (432)
Q Consensus 1 ~iRGL~~D~~~GnlLKld~~g~I~~a~hG~~~l~~eEi~~~Y~~~~i~~~~~~~~~~~l~tlFslpe~~L~a~lVd~~d~ 80 (432)
+||||++|+++|||||+|++|+|++|+||+++|+.+||.++||++++... .+++|.++||+||+||||||||+||+|++
T Consensus 63 ~iRGL~~D~~~GnllKld~~g~I~~~~hG~~~l~~~e~~~~Y~~~~~~~~-~~~~~~~l~tlF~lpe~~L~a~lvd~~~~ 141 (343)
T TIGR02244 63 AIRGLVFDKLKGNLLKLDRFGNILRGYHGLRPLSDKEVQEIYGNKYISRS-NGDRYYLLDTLFSLPEACLIAQLVDYFDD 141 (343)
T ss_pred cccceeeEcccCeEEEEcCCCcEEEEecCCccCCHHHHHHHcCccccCCC-CCccEEEecccccchHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999998642 33499999999999999999999999998
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhcchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh
Q 014030 81 NPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 160 (432)
Q Consensus 81 ~~~~~~~~~~y~~l~~DV~~av~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 160 (432)
++.. ....+|.+||+||++||++||.+|.||++|++||++||+++|.++.+|++||++|+|+||+|||+++||+.+|+|
T Consensus 142 ~~~~-~~~~~~~~~~~dv~~av~~~h~~g~lk~~v~~dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~ 220 (343)
T TIGR02244 142 HPKG-PLAFDYRQIYQDVRDALDWVHRKGSLKKKVMENPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKY 220 (343)
T ss_pred cccC-CCCCCHHHHHHHHHHHHHHhcccchHHHHHHHCHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 7431 112379999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCC
Q 014030 161 LCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTC 240 (432)
Q Consensus 161 l~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g 240 (432)
++|+++ .+++|++|||+||++|+||+||+++ +||++|++++|.++++. +..+++|
T Consensus 221 l~g~~~------~~~~w~~yFD~IIt~a~KP~FF~~~--~pf~~v~~~~g~~~~~~-----------------~~~l~~g 275 (343)
T TIGR02244 221 LLGPFL------GEHDWRDYFDVVIVDARKPGFFTEG--RPFRQVDVETGSLKWGE-----------------VDGLEPG 275 (343)
T ss_pred hhCCcc------cccchHhhCcEEEeCCCCCcccCCC--CceEEEeCCCCcccCCc-----------------cccccCC
Confidence 988553 5689999999999999999999973 79999999999876542 2235999
Q ss_pred ceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHH
Q 014030 241 RIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKK 308 (432)
Q Consensus 241 ~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe~Ei~~~~~~~~~~~~ 308 (432)
+||+||||.+|++++++ +|++||||||||++||+.+|+.+||||++|+||||.|+++|.++.+++.+
T Consensus 276 ~vY~gGn~~~~~~~l~~-~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pEL~~E~~~~~~~~~~~~~ 342 (343)
T TIGR02244 276 KVYSGGSLKQFHELLKW-RGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPELEQEVGILTNSKSLREE 342 (343)
T ss_pred CeEeCCCHHHHHHHHCC-CCCcEEEECCcchHHHHhhHHhcCcEEEEEchhHHHHHHHHhhchhhhhc
Confidence 99999999999999999 79999999999999999999999999999999999999999877766543
No 4
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-83 Score=646.27 Aligned_cols=348 Identities=47% Similarity=0.723 Sum_probs=311.8
Q ss_pred CccccEeecCCCeEEeecCCCceEEEeccCccCchhHHHHHhCCeecccCCCCCCeeeeccccchHHHHHHHHHHHHHhc
Q 014030 1 MVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEEKVEAYGNTLIRDAFDEPDYALIDTLFSLAEAYLFAQLVDFMDN 80 (432)
Q Consensus 1 ~iRGL~~D~~~GnlLKld~~g~I~~a~hG~~~l~~eEi~~~Y~~~~i~~~~~~~~~~~l~tlFslpe~~L~a~lVd~~d~ 80 (432)
++|||++|.++||++|+|++|+|++|+||+++++.+|+.++||++.++... +++.+++|+|++||+.++||+||++|+
T Consensus 77 ~~rGL~ld~~~GN~lKld~~~~vl~a~hg~rfls~~~~~eiyg~~~~~~~~--~~~~~l~t~F~~~ea~~~aq~vd~~d~ 154 (424)
T KOG2469|consen 77 PCRGLVLDKERGNLLKLDRFGYVLRAAHGTRFLSNEEISEIYGRKLVRLSD--SRYYLLNTLFSMPEADLFAQAVDFLDN 154 (424)
T ss_pred eeeeeEEeccCCceeeeeccCceeeeccccccccccchhhhcccccccccC--chhhhhhhhhhchhHHHHHhhcchhhc
Confidence 589999999999999999999999999999999999999999999987643 899999999999999999999999999
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhhcchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh
Q 014030 81 NPGKDSKSTDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 160 (432)
Q Consensus 81 ~~~~~~~~~~y~~l~~DV~~av~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 160 (432)
++...+.-.+|+.+|+||++|++++|.+|.+|+.++++|+|||.+++.++.||.++|++|||+||+|||+|+|||.+|++
T Consensus 155 ~~~~~~~~~dyk~~~~~v~~~~~~~h~~~~lk~~~~~~pek~V~~d~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~ 234 (424)
T KOG2469|consen 155 GPEYGPVDMDYKPGWKDVRAAGNAVHLYGLLKKKMMGKPERYVVYDGTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAF 234 (424)
T ss_pred CCccCccchhhcchHHHHHHHHhHHHHHHHHHHHHhcCCCceeeecCccccchHHHHhhccceEEeeccccchhhHHHHH
Confidence 99876666789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCC
Q 014030 161 LCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTC 240 (432)
Q Consensus 161 l~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g 240 (432)
++| .||+.|||+|||.|+||+||.++ +++++|++++|+++++++ +||+ ++|
T Consensus 235 ~~~-----------~dW~~yfd~v~~~a~Kp~ff~e~--~vlreV~t~~g~l~~g~~------~~p~----------e~~ 285 (424)
T KOG2469|consen 235 HYG-----------FDWETYFDLVETRAAKPGFFHEG--TVLREVEPQEGLLKNGDN------TGPL----------EQG 285 (424)
T ss_pred HhC-----------CCcceeEEEEEEeccCCcccccc--ceeeeecccccccccccc------CCcc----------hhc
Confidence 999 89999999999999999999996 799999999999998864 4554 999
Q ss_pred ceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Q 014030 241 RIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIE 320 (432)
Q Consensus 241 ~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~l~ 320 (432)
.+|+||+++.++++++. +|.++||+|||||+||+.|||+.||||++|||||+.|..+|..+++.+.++.++. ..++
T Consensus 286 ~~ySggs~~~~~~~l~~-~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL~~e~~v~~~~ke~~~el~~~~---~~la 361 (424)
T KOG2469|consen 286 GVYSGGSLKTVETSMKV-KGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPELEREDLVLLDSKEEFIELLNWS---SKLA 361 (424)
T ss_pred ccCCcchHHHHHHHhcc-cccceeecccceeeeEEecceecceEEEEEehhhhhhhhhhccchHHHHHHhccc---hhhH
Confidence 99999999999999998 8999999999999999999999999999999999999999999886666666555 5677
Q ss_pred HHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccccccCCccchhhhhhhcccccc
Q 014030 321 DQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLY 400 (432)
Q Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~ryAdlY 400 (432)
|.+++++.+..+... +....+.+++.+.+| ..+|..|||+|+||++.|.||.|++||||+|
T Consensus 362 Diy~~l~~s~~s~~~--------------~~~~~r~~~~~~~~~-----dk~~~~~~sl~~s~~~~t~~a~q~~r~A~~y 422 (424)
T KOG2469|consen 362 DIYPNLDLSLLSAPK--------------DLSIKRDIQKLTECM-----DKFYGVWGSLFRTGYQRTRFALQVERYADLY 422 (424)
T ss_pred hhccCCchhhhhccc--------------ccchhHHHHHHHHhH-----HHHhcchHHhhccccccchHHHHHHHHHHHh
Confidence 878887765432111 111122333444444 3456899999999999999999999999999
Q ss_pred cc
Q 014030 401 TS 402 (432)
Q Consensus 401 tS 402 (432)
||
T Consensus 423 ~s 424 (424)
T KOG2469|consen 423 TS 424 (424)
T ss_pred cC
Confidence 97
No 5
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=98.50 E-value=2.6e-07 Score=86.92 Aligned_cols=107 Identities=24% Similarity=0.252 Sum_probs=80.4
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCC
Q 014030 120 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNR 199 (432)
Q Consensus 120 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~ 199 (432)
..++...|.+..+|+.|+++|.++.++||++-.++...+..+ .|.+|||.|++..... . .
T Consensus 90 ~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~----~--~ 149 (221)
T TIGR02253 90 FAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERL--------------GVRDFFDAVITSEEEG----V--E 149 (221)
T ss_pred HHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhC--------------ChHHhccEEEEeccCC----C--C
Confidence 345677899999999999999999999999988887776653 5789999988753211 0 0
Q ss_pred CCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccc
Q 014030 200 ANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKK 279 (432)
Q Consensus 200 ~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk 279 (432)
.| ...+ .....+.+|. ...+++||||+...||..+++
T Consensus 150 KP-------------------------------------~~~~-----~~~~~~~~~~-~~~~~~~igDs~~~di~~A~~ 186 (221)
T TIGR02253 150 KP-------------------------------------HPKI-----FYAALKRLGV-KPEEAVMVGDRLDKDIKGAKN 186 (221)
T ss_pred CC-------------------------------------CHHH-----HHHHHHHcCC-ChhhEEEECCChHHHHHHHHH
Confidence 01 0112 3445666777 678999999999999888775
Q ss_pred ccCeeEEEeec
Q 014030 280 VLGWRTMLVVP 290 (432)
Q Consensus 280 ~~gWrT~aII~ 290 (432)
. ||+|++|-.
T Consensus 187 a-G~~~i~~~~ 196 (221)
T TIGR02253 187 L-GMKTVWINQ 196 (221)
T ss_pred C-CCEEEEECC
Confidence 5 999999864
No 6
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=98.28 E-value=3.9e-06 Score=74.20 Aligned_cols=105 Identities=22% Similarity=0.301 Sum_probs=82.0
Q ss_pred cccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCC
Q 014030 119 PKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDN 198 (432)
Q Consensus 119 p~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~ 198 (432)
....+...|.+..+|++|+++|.++.++||++-.++...++.+ .|.++||-|++....+.
T Consensus 72 ~~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~--------------~~~~~f~~i~~~~~~~~------ 131 (176)
T PF13419_consen 72 LESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERL--------------GLDDYFDEIISSDDVGS------ 131 (176)
T ss_dssp HHGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHT--------------THGGGCSEEEEGGGSSS------
T ss_pred hhhccchhhhhhhhhhhcccccceeEEeecCCccccccccccc--------------ccccccccccccchhhh------
Confidence 3477888999999999999999999999999998888888875 35699999988754221
Q ss_pred CCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccc
Q 014030 199 RANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 278 (432)
Q Consensus 199 ~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~sk 278 (432)
..| ...+ ...+.+-++. ...++++|||+. .||..++
T Consensus 132 ~Kp-------------------------------------~~~~-----~~~~~~~~~~-~p~~~~~vgD~~-~d~~~A~ 167 (176)
T PF13419_consen 132 RKP-------------------------------------DPDA-----YRRALEKLGI-PPEEILFVGDSP-SDVEAAK 167 (176)
T ss_dssp STT-------------------------------------SHHH-----HHHHHHHHTS-SGGGEEEEESSH-HHHHHHH
T ss_pred hhh-------------------------------------HHHH-----HHHHHHHcCC-CcceEEEEeCCH-HHHHHHH
Confidence 001 0112 3456666787 689999999999 9987776
Q ss_pred cccCeeEEEe
Q 014030 279 KVLGWRTMLV 288 (432)
Q Consensus 279 k~~gWrT~aI 288 (432)
..||+|+.|
T Consensus 168 -~~G~~~i~v 176 (176)
T PF13419_consen 168 -EAGIKTIWV 176 (176)
T ss_dssp -HTTSEEEEE
T ss_pred -HcCCeEEeC
Confidence 669999986
No 7
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=98.22 E-value=8.1e-06 Score=73.83 Aligned_cols=111 Identities=27% Similarity=0.316 Sum_probs=75.4
Q ss_pred hhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccC
Q 014030 110 TLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA 189 (432)
Q Consensus 110 ~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~ 189 (432)
.+...+..+.+ +...|.+..+|+.|+++|.++.++||+.... ...... +| +.++||.||+...
T Consensus 73 ~~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~-~~-------------l~~~f~~i~~~~~ 135 (183)
T TIGR01509 73 LFYDAILDEEK--LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQE-LG-------------LRDLFDVVIFSGD 135 (183)
T ss_pred HHHHHHHhccC--CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHh-cC-------------CHHHCCEEEEcCC
Confidence 34444444433 6678999999999999999999999999988 443332 23 4678999987521
Q ss_pred CCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccc
Q 014030 190 KPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDH 269 (432)
Q Consensus 190 KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDh 269 (432)
.|.-| ....+ +..+.+.++. ...+++||||+
T Consensus 136 -------------------~~~~K------------------------P~~~~-----~~~~~~~~~~-~~~~~~~vgD~ 166 (183)
T TIGR01509 136 -------------------VGRGK------------------------PDPDI-----YLLALKKLGL-KPEECLFVDDS 166 (183)
T ss_pred -------------------CCCCC------------------------CCHHH-----HHHHHHHcCC-CcceEEEEcCC
Confidence 00000 00112 2345666777 68999999999
Q ss_pred ccccccccccccCeeEEEe
Q 014030 270 IYGDILRSKKVLGWRTMLV 288 (432)
Q Consensus 270 I~~Di~~skk~~gWrT~aI 288 (432)
. .||..++ ..||+|++|
T Consensus 167 ~-~di~aA~-~~G~~~i~v 183 (183)
T TIGR01509 167 P-AGIEAAK-AAGMHTVLV 183 (183)
T ss_pred H-HHHHHHH-HcCCEEEeC
Confidence 8 4876664 679999986
No 8
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=98.19 E-value=3.7e-06 Score=78.07 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=77.0
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCce
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
..-|.+..+|++|+++|.++.++||++..+....++.+ .+.++||.|++...-
T Consensus 92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------gl~~~fd~i~~s~~~------------- 144 (198)
T TIGR01428 92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHA--------------GLDDPFDAVLSADAV------------- 144 (198)
T ss_pred CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHC--------------CChhhhheeEehhhc-------------
Confidence 44689999999999999999999999999888888753 367899998875210
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCe
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 283 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gW 283 (432)
|..| ....+ .....+.+|. ...++++|||+. .||..++ ..||
T Consensus 145 ------~~~K------------------------P~~~~-----~~~~~~~~~~-~p~~~~~vgD~~-~Di~~A~-~~G~ 186 (198)
T TIGR01428 145 ------RAYK------------------------PAPQV-----YQLALEALGV-PPDEVLFVASNP-WDLGGAK-KFGF 186 (198)
T ss_pred ------CCCC------------------------CCHHH-----HHHHHHHhCC-ChhhEEEEeCCH-HHHHHHH-HCCC
Confidence 0000 00112 2346667777 578999999999 8988775 6699
Q ss_pred eEEEeecc
Q 014030 284 RTMLVVPE 291 (432)
Q Consensus 284 rT~aII~E 291 (432)
+|+.|-+.
T Consensus 187 ~~i~v~r~ 194 (198)
T TIGR01428 187 KTAWVNRP 194 (198)
T ss_pred cEEEecCC
Confidence 99998764
No 9
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=98.05 E-value=1.8e-05 Score=75.80 Aligned_cols=104 Identities=21% Similarity=0.234 Sum_probs=76.5
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCC
Q 014030 121 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRA 200 (432)
Q Consensus 121 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~ 200 (432)
+++..-|....+|+.||++|.++.++||++-.++...+..+ .|.++||+|++.-..+. ..
T Consensus 92 ~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~~------~K 151 (229)
T PRK13226 92 TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQL--------------GWEQRCAVLIGGDTLAE------RK 151 (229)
T ss_pred hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHc--------------CchhcccEEEecCcCCC------CC
Confidence 34566789999999999999999999999988887776653 57889998876532110 00
Q ss_pred CceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccc
Q 014030 201 NLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 280 (432)
Q Consensus 201 ~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~ 280 (432)
| ...+ .....+.+|. ...+++||||+. .||..++ .
T Consensus 152 P-------------------------------------~p~~-----~~~~~~~l~~-~p~~~l~IGDs~-~Di~aA~-~ 186 (229)
T PRK13226 152 P-------------------------------------HPLP-----LLVAAERIGV-APTDCVYVGDDE-RDILAAR-A 186 (229)
T ss_pred C-------------------------------------CHHH-----HHHHHHHhCC-ChhhEEEeCCCH-HHHHHHH-H
Confidence 1 0111 2346677787 689999999995 8977765 6
Q ss_pred cCeeEEEee
Q 014030 281 LGWRTMLVV 289 (432)
Q Consensus 281 ~gWrT~aII 289 (432)
.||+|++|.
T Consensus 187 aG~~~i~v~ 195 (229)
T PRK13226 187 AGMPSVAAL 195 (229)
T ss_pred CCCcEEEEe
Confidence 699999984
No 10
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=98.04 E-value=1.4e-05 Score=77.56 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCC
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~ 201 (432)
-+..-|.+..+|+.|+++|.++.++||++-.++...+..+ .|.+|||.||+...-+. ..|
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~iv~~~~~~~------~KP 165 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLL--------------GLSDFFQAVIIGSECEH------AKP 165 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc--------------CChhhCcEEEecCcCCC------CCC
Confidence 3455689999999999999999999999999999999874 47899999988764220 011
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
+... .....+.++. ...+++||||.. .||..++ ..
T Consensus 166 -------------------------------------~p~~-----~~~a~~~~~~-~~~~~l~vgDs~-~Di~aA~-~a 200 (248)
T PLN02770 166 -------------------------------------HPDP-----YLKALEVLKV-SKDHTFVFEDSV-SGIKAGV-AA 200 (248)
T ss_pred -------------------------------------ChHH-----HHHHHHHhCC-ChhHEEEEcCCH-HHHHHHH-HC
Confidence 0001 2334555676 578999999999 8988887 56
Q ss_pred CeeEEEee
Q 014030 282 GWRTMLVV 289 (432)
Q Consensus 282 gWrT~aII 289 (432)
|++|++|-
T Consensus 201 Gi~~i~v~ 208 (248)
T PLN02770 201 GMPVVGLT 208 (248)
T ss_pred CCEEEEEe
Confidence 99999985
No 11
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=98.01 E-value=9.3e-06 Score=75.90 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=75.8
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCC
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~ 201 (432)
.+..-|....+|++|+++|.++.++||+.-.++...+..+ .|.++||.|++...-. . ..|
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~f~~i~~~~~~~----~--~KP 132 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEAL--------------GLLPLFDHVIGSDEVP----R--PKP 132 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHc--------------CChhheeeEEecCcCC----C--CCC
Confidence 4566789999999999999999999999999998888753 5788999887632100 0 000
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
+..+ .....+.++. ...+++||||+. .||..++ ..
T Consensus 133 -------------------------------------~~~~-----~~~~~~~~~~-~~~~~l~igD~~-~Di~aA~-~~ 167 (205)
T TIGR01454 133 -------------------------------------APDI-----VREALRLLDV-PPEDAVMVGDAV-TDLASAR-AA 167 (205)
T ss_pred -------------------------------------ChHH-----HHHHHHHcCC-ChhheEEEcCCH-HHHHHHH-Hc
Confidence 0112 2345566776 678999999997 7987776 55
Q ss_pred CeeEEEee
Q 014030 282 GWRTMLVV 289 (432)
Q Consensus 282 gWrT~aII 289 (432)
|+++++|.
T Consensus 168 Gi~~i~~~ 175 (205)
T TIGR01454 168 GTATVAAL 175 (205)
T ss_pred CCeEEEEE
Confidence 99999885
No 12
>PRK09449 dUMP phosphatase; Provisional
Probab=97.98 E-value=1.4e-05 Score=75.43 Aligned_cols=104 Identities=20% Similarity=0.218 Sum_probs=73.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.+..+|+.|+ +|.++.++||+..+.+...+..+ .+.++||.|++...-. ...|
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~v~~~~~~~------~~KP- 151 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERT--------------GLRDYFDLLVISEQVG------VAKP- 151 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhC--------------ChHHHcCEEEEECccC------CCCC-
Confidence 445689999999999 67999999999999888887763 4678999998763200 0000
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+ .....+.+|.....+++||||+...||..++ ..|
T Consensus 152 ------------------------------------~p~~-----~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~-~aG 189 (224)
T PRK09449 152 ------------------------------------DVAI-----FDYALEQMGNPDRSRVLMVGDNLHSDILGGI-NAG 189 (224)
T ss_pred ------------------------------------CHHH-----HHHHHHHcCCCCcccEEEEcCCcHHHHHHHH-HCC
Confidence 0011 1234455564223589999999999987665 669
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
|+|+.|.+
T Consensus 190 ~~~i~~~~ 197 (224)
T PRK09449 190 IDTCWLNA 197 (224)
T ss_pred CcEEEECC
Confidence 99999863
No 13
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=97.98 E-value=8.6e-06 Score=76.07 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=72.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
....|.+..+|+.||++|.++.++||++-..+....... ..|.++||.|++...=
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~-------------~~l~~~fd~v~~s~~~------------ 137 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEY-------------PEVRAAADHIYLSQDL------------ 137 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhc-------------hhHHHhcCEEEEeccc------------
Confidence 345688999999999999999999999876554433221 3578899998876420
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
|..| ....+| ....+.+|. ...+++||||+.. ||..++ ..|
T Consensus 138 -------~~~K------------------------P~p~~~-----~~~~~~~~~-~p~~~l~vgD~~~-di~aA~-~aG 178 (199)
T PRK09456 138 -------GMRK------------------------PEARIY-----QHVLQAEGF-SAADAVFFDDNAD-NIEAAN-ALG 178 (199)
T ss_pred -------CCCC------------------------CCHHHH-----HHHHHHcCC-ChhHeEEeCCCHH-HHHHHH-HcC
Confidence 0000 112233 345666777 6899999999975 765555 679
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
|+|+.|-.
T Consensus 179 ~~~i~~~~ 186 (199)
T PRK09456 179 ITSILVTD 186 (199)
T ss_pred CEEEEecC
Confidence 99998854
No 14
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.97 E-value=1.9e-05 Score=77.75 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=76.9
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.+..+|+.|+++|.++.++||++..++..++..+ .|.+|||.||+...-. . ..|
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~--------------gl~~~Fd~ii~~~d~~----~--~KP- 166 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAV--------------GMEGFFSVVLAAEDVY----R--GKP- 166 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHc--------------CCHhhCcEEEecccCC----C--CCC-
Confidence 344689999999999999999999999999999998874 4889999999863200 0 011
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+| ....+.+|. ...+++||||.. .||..++ ..|
T Consensus 167 ------------------------------------~Pe~~-----~~a~~~l~~-~p~~~l~IgDs~-~Di~aA~-~aG 202 (260)
T PLN03243 167 ------------------------------------DPEMF-----MYAAERLGF-IPERCIVFGNSN-SSVEAAH-DGC 202 (260)
T ss_pred ------------------------------------CHHHH-----HHHHHHhCC-ChHHeEEEcCCH-HHHHHHH-HcC
Confidence 01122 345666787 678999999995 6876666 569
Q ss_pred eeEEEee
Q 014030 283 WRTMLVV 289 (432)
Q Consensus 283 WrT~aII 289 (432)
|+|++|-
T Consensus 203 ~~~i~v~ 209 (260)
T PLN03243 203 MKCVAVA 209 (260)
T ss_pred CEEEEEe
Confidence 9999885
No 15
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.97 E-value=2.8e-05 Score=72.49 Aligned_cols=107 Identities=23% Similarity=0.275 Sum_probs=78.3
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccC
Q 014030 118 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHED 197 (432)
Q Consensus 118 np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~ 197 (432)
...+.+...|....+|+.|+++|.++.++||+.-.++...+..+ +|.++||.|++...-+ .
T Consensus 79 ~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~- 139 (213)
T TIGR01449 79 VAGELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL--------------GLAKYFSVLIGGDSLA----Q- 139 (213)
T ss_pred hccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CcHhhCcEEEecCCCC----C-
Confidence 33445667789999999999999999999999999999988863 5788999886532100 0
Q ss_pred CCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccc
Q 014030 198 NRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRS 277 (432)
Q Consensus 198 ~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~s 277 (432)
..| ...+ ...+++.++. ...+++||||+ ..|+..+
T Consensus 140 -~Kp-------------------------------------~p~~-----~~~~~~~~~~-~~~~~~~igDs-~~d~~aa 174 (213)
T TIGR01449 140 -RKP-------------------------------------HPDP-----LLLAAERLGV-APQQMVYVGDS-RVDIQAA 174 (213)
T ss_pred -CCC-------------------------------------ChHH-----HHHHHHHcCC-ChhHeEEeCCC-HHHHHHH
Confidence 000 0112 2346666776 57889999999 5898777
Q ss_pred ccccCeeEEEee
Q 014030 278 KKVLGWRTMLVV 289 (432)
Q Consensus 278 kk~~gWrT~aII 289 (432)
++ .|+.|++|.
T Consensus 175 ~~-aG~~~i~v~ 185 (213)
T TIGR01449 175 RA-AGCPSVLLT 185 (213)
T ss_pred HH-CCCeEEEEc
Confidence 74 699999884
No 16
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.91 E-value=1.5e-05 Score=76.43 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=74.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+...|.+..+|+.||++|.++.++||++..++...+..+ .|.++||.||+...-. . ..|
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~iv~s~~~~----~--~KP- 150 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHT--------------GLDAHLDLLLSTHTFG----Y--PKE- 150 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHC--------------CcHHHCCEEEEeeeCC----C--CCC-
Confidence 345688999999999999999999999999888887763 4789999988754211 0 011
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+ ....++.+|. ...+++||||... ||..+ +..|
T Consensus 151 ------------------------------------~p~~-----~~~~~~~~~~-~p~~~l~igDs~~-di~aA-~~aG 186 (224)
T PRK14988 151 ------------------------------------DQRL-----WQAVAEHTGL-KAERTLFIDDSEP-ILDAA-AQFG 186 (224)
T ss_pred ------------------------------------CHHH-----HHHHHHHcCC-ChHHEEEEcCCHH-HHHHH-HHcC
Confidence 0011 2235566676 6789999999985 76555 5679
Q ss_pred eeEEEeecc
Q 014030 283 WRTMLVVPE 291 (432)
Q Consensus 283 WrT~aII~E 291 (432)
|+|+..|+-
T Consensus 187 ~~~~~~v~~ 195 (224)
T PRK14988 187 IRYCLGVTN 195 (224)
T ss_pred CeEEEEEeC
Confidence 998665554
No 17
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=97.91 E-value=1.5e-05 Score=74.10 Aligned_cols=99 Identities=25% Similarity=0.322 Sum_probs=68.7
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCce
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
...|.+..+|+.|+++|.++.++||++... ...+.. -.+.++||.|++...-
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~--------------~~l~~~fd~i~~s~~~------------- 156 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEA--------------LGLLEYFDFVVTSYEV------------- 156 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHH--------------CCcHHhcceEEeeccc-------------
Confidence 346889999999999999999999998643 333332 3468899998874320
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCe
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 283 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gW 283 (432)
|..| ....+ .....+.+|. ...+++||||+...||..++ ..||
T Consensus 157 ------~~~K------------------------P~~~~-----~~~~~~~~~~-~~~~~~~IgD~~~~Di~~A~-~aG~ 199 (203)
T TIGR02252 157 ------GAEK------------------------PDPKI-----FQEALERAGI-SPEEALHIGDSLRNDYQGAR-AAGW 199 (203)
T ss_pred ------CCCC------------------------CCHHH-----HHHHHHHcCC-ChhHEEEECCCchHHHHHHH-HcCC
Confidence 0000 00111 2335566676 67899999999999988775 5699
Q ss_pred eEEE
Q 014030 284 RTML 287 (432)
Q Consensus 284 rT~a 287 (432)
+|++
T Consensus 200 ~~i~ 203 (203)
T TIGR02252 200 RALL 203 (203)
T ss_pred eeeC
Confidence 9863
No 18
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.90 E-value=3.3e-05 Score=67.28 Aligned_cols=103 Identities=24% Similarity=0.238 Sum_probs=70.1
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEeeCCC--------chhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 014030 120 KTYINEDRSIVPMLKMLRESGRSTFLVTNSL--------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 191 (432)
Q Consensus 120 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~--------~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP 191 (432)
......-|.+..+|+.|+++|.+++++||+. .+++...+..+ | - .|+.+++..
T Consensus 21 ~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~-~-----------l----~~~~~~~~~--- 81 (132)
T TIGR01662 21 EDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEEL-G-----------V----PIDVLYACP--- 81 (132)
T ss_pred HHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHC-C-----------C----CEEEEEECC---
Confidence 3334556899999999999999999999999 66666666654 2 1 134444332
Q ss_pred CCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHh-cCcCCCcEEEEcccc
Q 014030 192 GFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHI 270 (432)
Q Consensus 192 ~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll-~~~~G~~VLY~GDhI 270 (432)
. . ..| +. +....+++.+ +. ...+++||||+.
T Consensus 82 ~---~--~KP-------------------------------------~~-----~~~~~~~~~~~~~-~~~~~v~IGD~~ 113 (132)
T TIGR01662 82 H---C--RKP-------------------------------------KP-----GMFLEALKRFNEI-DPEESVYVGDQD 113 (132)
T ss_pred C---C--CCC-------------------------------------Ch-----HHHHHHHHHcCCC-ChhheEEEcCCC
Confidence 0 0 011 01 1123456666 46 678999999988
Q ss_pred cccccccccccCeeEEEeec
Q 014030 271 YGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 271 ~~Di~~skk~~gWrT~aII~ 290 (432)
..||..++ ..||+|+.|-|
T Consensus 114 ~~Di~~A~-~~Gi~~i~~~~ 132 (132)
T TIGR01662 114 LTDLQAAK-RAGLAFILVAP 132 (132)
T ss_pred cccHHHHH-HCCCeEEEeeC
Confidence 89988775 66999999865
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.85 E-value=5.7e-05 Score=71.05 Aligned_cols=103 Identities=27% Similarity=0.273 Sum_probs=76.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.+..+|+.|+++|.++.++||+.-.++...+..+ .|.+|||.|++...-+ . ..
T Consensus 81 ~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~--------------gl~~~f~~i~~~~~~~----~--~K-- 138 (214)
T PRK13288 81 VTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLT--------------GLDEFFDVVITLDDVE----H--AK-- 138 (214)
T ss_pred cccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhceeEEEecCcCC----C--CC--
Confidence 445689999999999999999999999988888888763 4789999988632100 0 00
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
.+... ...+.+.++. ...+++||||+. .||..++ ..|
T Consensus 139 -----------------------------------p~p~~-----~~~~~~~~~~-~~~~~~~iGDs~-~Di~aa~-~aG 175 (214)
T PRK13288 139 -----------------------------------PDPEP-----VLKALELLGA-KPEEALMVGDNH-HDILAGK-NAG 175 (214)
T ss_pred -----------------------------------CCcHH-----HHHHHHHcCC-CHHHEEEECCCH-HHHHHHH-HCC
Confidence 01112 2245666676 578999999997 8987776 559
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
+++++|-.
T Consensus 176 ~~~i~v~~ 183 (214)
T PRK13288 176 TKTAGVAW 183 (214)
T ss_pred CeEEEEcC
Confidence 99999854
No 20
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.84 E-value=3.6e-05 Score=64.72 Aligned_cols=117 Identities=27% Similarity=0.336 Sum_probs=78.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+...|.+..+|++|+++|.+++++||+...++...++.+ .+..+|+.|++....+.+-... . ..
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~--------------~~~~~~~~i~~~~~~~~~~~~~-~-~~ 86 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEEL--------------GLDDYFDPVITSNGAAIYYPKE-G-LF 86 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHc--------------CCchhhhheeccchhhhhcccc-c-cc
Confidence 345688999999999999999999999988888888764 2457788888777655443321 1 10
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
. + +.+ ..++ ++. .+....+.+.++. ...+++||||+. +|+...+ ..|
T Consensus 87 ~------~-------~~~-~~~~------------~~~----~~~~~~~~~~~~~-~~~~~~~igD~~-~d~~~~~-~~g 133 (139)
T cd01427 87 L------G-------GGP-FDIG------------KPN----PDKLLAALKLLGV-DPEEVLMVGDSL-NDIEMAK-AAG 133 (139)
T ss_pred c------c-------ccc-cccC------------CCC----HHHHHHHHHHcCC-ChhhEEEeCCCH-HHHHHHH-HcC
Confidence 0 0 000 0011 111 2233456666676 578999999999 9987776 459
Q ss_pred eeEEEe
Q 014030 283 WRTMLV 288 (432)
Q Consensus 283 WrT~aI 288 (432)
|+|++|
T Consensus 134 ~~~i~v 139 (139)
T cd01427 134 GLGVAV 139 (139)
T ss_pred CceeeC
Confidence 999875
No 21
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.78 E-value=0.0002 Score=74.40 Aligned_cols=103 Identities=10% Similarity=0.079 Sum_probs=76.7
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCce
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
..-|.+..+|+.|+++|.++.++||++-.+++..+..+ .|.+|||.||+...... ..|
T Consensus 216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~l--------------gL~~yFd~Iv~sddv~~------~KP-- 273 (381)
T PLN02575 216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSI--------------GIRGFFSVIVAAEDVYR------GKP-- 273 (381)
T ss_pred CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCHHHceEEEecCcCCC------CCC--
Confidence 34588999999999999999999999999999888873 47899999988654210 011
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCe
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 283 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gW 283 (432)
...+| ....+.+|. ...+++||||.. .||..++ ..||
T Consensus 274 -----------------------------------~Peif-----l~A~~~lgl-~Peecl~IGDS~-~DIeAAk-~AGm 310 (381)
T PLN02575 274 -----------------------------------DPEMF-----IYAAQLLNF-IPERCIVFGNSN-QTVEAAH-DARM 310 (381)
T ss_pred -----------------------------------CHHHH-----HHHHHHcCC-CcccEEEEcCCH-HHHHHHH-HcCC
Confidence 01122 224556676 689999999987 5866555 6699
Q ss_pred eEEEeecc
Q 014030 284 RTMLVVPE 291 (432)
Q Consensus 284 rT~aII~E 291 (432)
+|++|...
T Consensus 311 ~~IgV~~~ 318 (381)
T PLN02575 311 KCVAVASK 318 (381)
T ss_pred EEEEECCC
Confidence 99999753
No 22
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.78 E-value=4e-05 Score=74.16 Aligned_cols=104 Identities=16% Similarity=0.110 Sum_probs=74.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCc-cEEEEccCCCCCCccCCCCC
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYF-DVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlF-DvVIv~A~KP~FF~~~~~~~ 201 (432)
+..-|.+..+|+.|+++|.++.++||+.-..++.++..+ | +.++| |.||+...-+. ..|
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~-g-------------l~~~f~d~ii~~~~~~~------~KP 157 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEA-A-------------LQGYRPDYNVTTDDVPA------GRP 157 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHH-H-------------hcCCCCceEEccccCCC------CCC
Confidence 456789999999999999999999999999999888774 2 35664 88877432110 001
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
...+| ....+.++.....+++||||+. .||..++ ..
T Consensus 158 -------------------------------------~p~~~-----~~a~~~l~~~~~~~~l~IGDs~-~Di~aA~-~a 193 (253)
T TIGR01422 158 -------------------------------------APWMA-----LKNAIELGVYDVAACVKVGDTV-PDIEEGR-NA 193 (253)
T ss_pred -------------------------------------CHHHH-----HHHHHHcCCCCchheEEECCcH-HHHHHHH-HC
Confidence 01122 2344555652257899999998 9987776 55
Q ss_pred CeeEEEeec
Q 014030 282 GWRTMLVVP 290 (432)
Q Consensus 282 gWrT~aII~ 290 (432)
|++|++|..
T Consensus 194 Gi~~i~v~~ 202 (253)
T TIGR01422 194 GMWTVGLIL 202 (253)
T ss_pred CCeEEEEec
Confidence 999999963
No 23
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.78 E-value=3.7e-05 Score=72.39 Aligned_cols=106 Identities=18% Similarity=0.076 Sum_probs=75.8
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCce
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
..-|.+..+|..|+++|.++.++||+.-.++...+..+ | -.+.++||.|++...-. . ..|
T Consensus 87 ~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~-~-----------l~~~~~f~~i~~~~~~~---~---~KP-- 146 (220)
T TIGR03351 87 VALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKL-G-----------WTVGDDVDAVVCPSDVA---A---GRP-- 146 (220)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHh-h-----------hhhhccCCEEEcCCcCC---C---CCC--
Confidence 45678999999999999999999999999999999864 3 12239999999874311 0 001
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcC-CCcEEEEcccccccccccccccC
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIES-SSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~-G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+ .....+.++. . ..+++||||.. .||..++ ..|
T Consensus 147 -----------------------------------~p~~-----~~~a~~~~~~-~~~~~~~~igD~~-~Di~aa~-~aG 183 (220)
T TIGR03351 147 -----------------------------------APDL-----ILRAMELTGV-QDVQSVAVAGDTP-NDLEAGI-NAG 183 (220)
T ss_pred -----------------------------------CHHH-----HHHHHHHcCC-CChhHeEEeCCCH-HHHHHHH-HCC
Confidence 0011 1224445565 4 47999999997 7977666 669
Q ss_pred eeE-EEeeccc
Q 014030 283 WRT-MLVVPEL 292 (432)
Q Consensus 283 WrT-~aII~EL 292 (432)
|+| ++|...-
T Consensus 184 ~~~~i~~~~g~ 194 (220)
T TIGR03351 184 AGAVVGVLTGA 194 (220)
T ss_pred CCeEEEEecCC
Confidence 999 7886543
No 24
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=97.77 E-value=2.6e-05 Score=70.98 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=67.9
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCce
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
...|.+..+|+.|+++|.++.++||+.- ....++. -.|.++||.|+....-+. ..|
T Consensus 87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~--------------~~l~~~f~~~~~~~~~~~------~kp-- 142 (185)
T TIGR01990 87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEK--------------LGLIDYFDAIVDPAEIKK------GKP-- 142 (185)
T ss_pred ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHh--------------cCcHhhCcEEEehhhcCC------CCC--
Confidence 3458999999999999999999999853 3333333 357899999886542110 001
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCe
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 283 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gW 283 (432)
...+|. ..++.++. ...+++||||+. .||..++ ..|+
T Consensus 143 -----------------------------------~p~~~~-----~~~~~~~~-~~~~~v~vgD~~-~di~aA~-~aG~ 179 (185)
T TIGR01990 143 -----------------------------------DPEIFL-----AAAEGLGV-SPSECIGIEDAQ-AGIEAIK-AAGM 179 (185)
T ss_pred -----------------------------------ChHHHH-----HHHHHcCC-CHHHeEEEecCH-HHHHHHH-HcCC
Confidence 111222 35556676 578999999996 8977776 5599
Q ss_pred eEEEe
Q 014030 284 RTMLV 288 (432)
Q Consensus 284 rT~aI 288 (432)
+|++|
T Consensus 180 ~~i~v 184 (185)
T TIGR01990 180 FAVGV 184 (185)
T ss_pred EEEec
Confidence 99986
No 25
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=97.77 E-value=3.9e-05 Score=71.90 Aligned_cols=101 Identities=23% Similarity=0.320 Sum_probs=69.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc----CCCCCCccCC
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS----AKPGFFHEDN 198 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A----~KP~FF~~~~ 198 (432)
+...|.+..+|+.||++|.++.++||+.......... +.. ..+.++||.|++.. +||.
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~-~~~-----------~~l~~~fd~v~~s~~~~~~KP~------ 154 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEA-LLP-----------GDIMALFDAVVESCLEGLRKPD------ 154 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhH-hhh-----------hhhHhhCCEEEEeeecCCCCCC------
Confidence 3446889999999999999999999997655332222 111 34678999988542 2220
Q ss_pred CCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccc
Q 014030 199 RANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSK 278 (432)
Q Consensus 199 ~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~sk 278 (432)
..+| ...++.+|. ...+++||||. ..||..++
T Consensus 155 -----------------------------------------p~~~-----~~~~~~~g~-~~~~~l~i~D~-~~di~aA~ 186 (211)
T TIGR02247 155 -----------------------------------------PRIY-----QLMLERLGV-APEECVFLDDL-GSNLKPAA 186 (211)
T ss_pred -----------------------------------------HHHH-----HHHHHHcCC-CHHHeEEEcCC-HHHHHHHH
Confidence 1122 335566676 67899999875 66877666
Q ss_pred cccCeeEEEeec
Q 014030 279 KVLGWRTMLVVP 290 (432)
Q Consensus 279 k~~gWrT~aII~ 290 (432)
..||.|++|.+
T Consensus 187 -~aG~~~i~v~~ 197 (211)
T TIGR02247 187 -ALGITTIKVSD 197 (211)
T ss_pred -HcCCEEEEECC
Confidence 55999999864
No 26
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.77 E-value=5.1e-05 Score=75.28 Aligned_cols=102 Identities=17% Similarity=0.206 Sum_probs=76.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.+..+|+.|+++|.++.++||+.-.+++..+..+ .+.++||.|++....+
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~--------------gl~~~F~~vi~~~~~~----------- 195 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQ--------------GLRSLFSVVQAGTPIL----------- 195 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CChhheEEEEecCCCC-----------
Confidence 445689999999999999999999999999999998874 4688999886542100
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
.+..+ ...+++.++. ...+++||||.. .||..++. .|
T Consensus 196 -----------------------------------~k~~~-----~~~~l~~~~~-~p~~~l~IGDs~-~Di~aA~~-AG 232 (273)
T PRK13225 196 -----------------------------------SKRRA-----LSQLVAREGW-QPAAVMYVGDET-RDVEAARQ-VG 232 (273)
T ss_pred -----------------------------------CCHHH-----HHHHHHHhCc-ChhHEEEECCCH-HHHHHHHH-CC
Confidence 00011 2345556676 578999999996 69888776 79
Q ss_pred eeEEEeeccc
Q 014030 283 WRTMLVVPEL 292 (432)
Q Consensus 283 WrT~aII~EL 292 (432)
|+|++|....
T Consensus 233 ~~~I~v~~g~ 242 (273)
T PRK13225 233 LIAVAVTWGF 242 (273)
T ss_pred CeEEEEecCC
Confidence 9999996544
No 27
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.74 E-value=9.5e-05 Score=70.03 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=78.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
...-|.+..+|+.|+++|.++.++||+.-..+..+++.+ .+.++||.|++... ... ..|
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~----~~~--~Kp- 149 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMF--------------DLRDYFDALASAEK----LPY--SKP- 149 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhC--------------cchhcccEEEEccc----CCC--CCC-
Confidence 344589999999999999999999999999999888873 36889998886632 110 001
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
+..+ ...+++.+|. ...+++||||+. .||..++ ..|
T Consensus 150 ------------------------------------~~~~-----~~~~~~~~~~-~~~~~~~igDs~-~Di~aA~-~aG 185 (222)
T PRK10826 150 ------------------------------------HPEV-----YLNCAAKLGV-DPLTCVALEDSF-NGMIAAK-AAR 185 (222)
T ss_pred ------------------------------------CHHH-----HHHHHHHcCC-CHHHeEEEcCCh-hhHHHHH-HcC
Confidence 0112 2456777787 678999999998 7977666 569
Q ss_pred eeEEEeecc
Q 014030 283 WRTMLVVPE 291 (432)
Q Consensus 283 WrT~aII~E 291 (432)
++|++|-..
T Consensus 186 ~~~i~v~~~ 194 (222)
T PRK10826 186 MRSIVVPAP 194 (222)
T ss_pred CEEEEecCC
Confidence 999998654
No 28
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=97.74 E-value=5.3e-05 Score=75.48 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=76.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.+..+|..|++.|.++.++||+.-++++.++..+.+ ..|.++||+| ....- .. ..|
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~-----------~~~~~~~~~v-~~~~~----~~--~KP- 203 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLG-----------PERAQGLDVF-AGDDV----PK--KKP- 203 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhcc-----------ccccCceEEE-ecccc----CC--CCC-
Confidence 34568899999999999999999999999999999987765 4677778765 22100 00 000
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+ ....++.+|. ...+++||||.+ .||..++ ..|
T Consensus 204 ------------------------------------~p~~-----~~~a~~~~~~-~p~~~l~IGDs~-~Di~aA~-~aG 239 (286)
T PLN02779 204 ------------------------------------DPDI-----YNLAAETLGV-DPSRCVVVEDSV-IGLQAAK-AAG 239 (286)
T ss_pred ------------------------------------CHHH-----HHHHHHHhCc-ChHHEEEEeCCH-HhHHHHH-HcC
Confidence 0011 2335666777 678999999997 6987776 469
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
+++++|..
T Consensus 240 ~~~i~v~~ 247 (286)
T PLN02779 240 MRCIVTKS 247 (286)
T ss_pred CEEEEEcc
Confidence 99998855
No 29
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.72 E-value=7.3e-05 Score=70.03 Aligned_cols=104 Identities=17% Similarity=0.241 Sum_probs=76.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+...|....+|++|+++ .++.++||+.-......+..+ .|..+||.|++...-. ...|
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~------~~KP- 153 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKS--------------GLFPFFDDIFVSEDAG------IQKP- 153 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHC--------------CcHhhcCEEEEcCccC------CCCC-
Confidence 34568899999999999 999999999998888887763 4678999998854200 0000
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHh-cCcCCCcEEEEccccccccccccccc
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL-SIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll-~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
...+| ....+.+ |. +..+++||||+...||..++ ..
T Consensus 154 ------------------------------------~~~~~-----~~~~~~~~~~-~~~~~v~igD~~~~di~~A~-~~ 190 (224)
T TIGR02254 154 ------------------------------------DKEIF-----NYALERMPKF-SKEEVLMIGDSLTADIKGGQ-NA 190 (224)
T ss_pred ------------------------------------CHHHH-----HHHHHHhcCC-CchheEEECCCcHHHHHHHH-HC
Confidence 11122 2455566 76 57899999999989988877 45
Q ss_pred CeeEEEeecc
Q 014030 282 GWRTMLVVPE 291 (432)
Q Consensus 282 gWrT~aII~E 291 (432)
||.++.+-..
T Consensus 191 G~~~i~~~~~ 200 (224)
T TIGR02254 191 GLDTCWMNPD 200 (224)
T ss_pred CCcEEEECCC
Confidence 9999998654
No 30
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.69 E-value=5.5e-05 Score=69.82 Aligned_cols=96 Identities=25% Similarity=0.357 Sum_probs=65.8
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEe
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 205 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v 205 (432)
.|++..|+..||++|-|+++++|-.=.=+. ....-+|-+ -|-.|+|| |. ..|++
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~-~~~~~l~v~------------------fi~~A~KP--~~----~~fr~- 101 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVA-RAAEKLGVP------------------FIYRAKKP--FG----RAFRR- 101 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHH-hhhhhcCCc------------------eeecccCc--cH----HHHHH-
Confidence 478999999999999999999994432222 222223311 25678888 21 11211
Q ss_pred ecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeE
Q 014030 206 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRT 285 (432)
Q Consensus 206 ~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT 285 (432)
.++-++. +.++|+-|||.|+.||+..+ ..|.||
T Consensus 102 ---------------------------------------------Al~~m~l-~~~~vvmVGDqL~TDVlggn-r~G~~t 134 (175)
T COG2179 102 ---------------------------------------------ALKEMNL-PPEEVVMVGDQLFTDVLGGN-RAGMRT 134 (175)
T ss_pred ---------------------------------------------HHHHcCC-ChhHEEEEcchhhhhhhccc-ccCcEE
Confidence 2233354 67999999999999999887 569999
Q ss_pred EEeecccHH
Q 014030 286 MLVVPELER 294 (432)
Q Consensus 286 ~aII~ELe~ 294 (432)
++|.|=-..
T Consensus 135 IlV~Pl~~~ 143 (175)
T COG2179 135 ILVEPLVAP 143 (175)
T ss_pred EEEEEeccc
Confidence 999885433
No 31
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=97.68 E-value=6.7e-05 Score=72.36 Aligned_cols=118 Identities=12% Similarity=0.101 Sum_probs=81.7
Q ss_pred hhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE--
Q 014030 109 GTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT-- 186 (432)
Q Consensus 109 G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv-- 186 (432)
|.++++.-++-..-...-|.+..+|++|+++|.++.++||++-..+...+.+.-. .++.+|||.++.
T Consensus 80 g~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~-----------~~L~~~f~~~fd~~ 148 (220)
T TIGR01691 80 GLIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDA-----------GNLTPYFSGYFDTT 148 (220)
T ss_pred HHHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccc-----------cchhhhcceEEEeC
Confidence 6655555444333334568999999999999999999999999999988887532 245566664321
Q ss_pred ccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEE
Q 014030 187 GSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYV 266 (432)
Q Consensus 187 ~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~ 266 (432)
-+.|| .... .....+-+|. ...++|||
T Consensus 149 ~g~KP-----------------------------------------------~p~~-----y~~i~~~lgv-~p~e~lfV 175 (220)
T TIGR01691 149 VGLKT-----------------------------------------------EAQS-----YVKIAGQLGS-PPREILFL 175 (220)
T ss_pred cccCC-----------------------------------------------CHHH-----HHHHHHHhCc-ChhHEEEE
Confidence 00111 0112 2446667787 67899999
Q ss_pred cccccccccccccccCeeEEEeeccc
Q 014030 267 GDHIYGDILRSKKVLGWRTMLVVPEL 292 (432)
Q Consensus 267 GDhI~~Di~~skk~~gWrT~aII~EL 292 (432)
||+. .||..++ ..||+|+++++.=
T Consensus 176 gDs~-~Di~AA~-~AG~~ti~v~r~g 199 (220)
T TIGR01691 176 SDII-NELDAAR-KAGLHTGQLVRPG 199 (220)
T ss_pred eCCH-HHHHHHH-HcCCEEEEEECCC
Confidence 9995 8877665 5799999998654
No 32
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=97.62 E-value=7.8e-05 Score=68.46 Aligned_cols=103 Identities=17% Similarity=0.178 Sum_probs=70.5
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCC
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~ 201 (432)
.+...|.+..+|++|+ +++.++||++-..+...+..+ .+.++||.|++...-.. +.+
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~--------------gl~~~fd~i~~~~~~~~------~~~ 138 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRL--------------GIEDCFDGIFCFDTANP------DYL 138 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHc--------------CcHhhhCeEEEeecccC------ccC
Confidence 4556788999999997 479999999999888888764 36789999887643210 000
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
..| ....+| ....+.+|. ...+++||||+. .||..++ ..
T Consensus 139 ---------~~K------------------------P~p~~~-----~~~~~~~~~-~~~~~l~vgD~~-~di~aA~-~~ 177 (184)
T TIGR01993 139 ---------LPK------------------------PSPQAY-----EKALREAGV-DPERAIFFDDSA-RNIAAAK-AL 177 (184)
T ss_pred ---------CCC------------------------CCHHHH-----HHHHHHhCC-CccceEEEeCCH-HHHHHHH-Hc
Confidence 000 001122 235556676 678999999997 5866665 66
Q ss_pred CeeEEEe
Q 014030 282 GWRTMLV 288 (432)
Q Consensus 282 gWrT~aI 288 (432)
|++|++|
T Consensus 178 G~~~i~v 184 (184)
T TIGR01993 178 GMKTVLV 184 (184)
T ss_pred CCEEeeC
Confidence 9999875
No 33
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.60 E-value=0.00015 Score=68.16 Aligned_cols=107 Identities=22% Similarity=0.280 Sum_probs=78.3
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCC
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~ 201 (432)
.+..-|.+...|+++++. .++.++||+.-........-+ . -.++||.|++....- +. .|
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~-------------g-l~~~Fd~v~~s~~~g--~~----KP 155 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQL-------------G-LLDYFDAVFISEDVG--VA----KP 155 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHc-------------C-ChhhhheEEEecccc--cC----CC
Confidence 355567888999999888 899999999777777777764 1 478999998765422 00 11
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
..++| ...++.+|. ...++++|||++..||.-++ ..
T Consensus 156 -------------------------------------~~~~f-----~~~~~~~g~-~p~~~l~VgD~~~~di~gA~-~~ 191 (229)
T COG1011 156 -------------------------------------DPEIF-----EYALEKLGV-PPEEALFVGDSLENDILGAR-AL 191 (229)
T ss_pred -------------------------------------CcHHH-----HHHHHHcCC-CcceEEEECCChhhhhHHHH-hc
Confidence 11233 236777777 57899999999999987665 56
Q ss_pred CeeEEEeecccH
Q 014030 282 GWRTMLVVPELE 293 (432)
Q Consensus 282 gWrT~aII~ELe 293 (432)
||+|+.|-++-.
T Consensus 192 G~~~vwi~~~~~ 203 (229)
T COG1011 192 GMKTVWINRGGK 203 (229)
T ss_pred CcEEEEECCCCC
Confidence 999999987654
No 34
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=97.58 E-value=0.00017 Score=65.68 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=71.6
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCC
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~ 201 (432)
.+...|.+..+|+.|+++|.++.++||+ ..++..++.+ .|.+|||.|++....+ ...|
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~--------------~l~~~f~~v~~~~~~~------~~kp 143 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKL--------------GLTDYFDAIVDADEVK------EGKP 143 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHc--------------ChHHHCCEeeehhhCC------CCCC
Confidence 3567889999999999999999999999 6677666652 5788999988743211 0001
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
...+| ....+-++. ...+++||||.. .||..++ ..
T Consensus 144 -------------------------------------~~~~~-----~~~~~~~~~-~~~~~v~IgD~~-~di~aA~-~~ 178 (185)
T TIGR02009 144 -------------------------------------HPETF-----LLAAELLGV-SPNECVVFEDAL-AGVQAAR-AA 178 (185)
T ss_pred -------------------------------------ChHHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHHHHH-HC
Confidence 01122 245556676 578999999995 7987776 45
Q ss_pred CeeEEEe
Q 014030 282 GWRTMLV 288 (432)
Q Consensus 282 gWrT~aI 288 (432)
||+|++|
T Consensus 179 G~~~i~v 185 (185)
T TIGR02009 179 GMFAVAV 185 (185)
T ss_pred CCeEeeC
Confidence 9999875
No 35
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.57 E-value=0.0002 Score=67.34 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=74.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
...-|.+..+|+.|+++|.++.++||+.-.+....+..+ .|.++||.|++...-+ . ..
T Consensus 92 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~~~~~~~~~----~--~k-- 149 (226)
T PRK13222 92 SRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEAL--------------GIADYFSVVIGGDSLP----N--KK-- 149 (226)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHc--------------CCccCccEEEcCCCCC----C--CC--
Confidence 456789999999999999999999999998888877763 3677898866532100 0 00
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
.++. ....+.+.++. ...+++||||.. .|+-.++. .|
T Consensus 150 -----------------------------------p~~~-----~~~~~~~~~~~-~~~~~i~igD~~-~Di~~a~~-~g 186 (226)
T PRK13222 150 -----------------------------------PDPA-----PLLLACEKLGL-DPEEMLFVGDSR-NDIQAARA-AG 186 (226)
T ss_pred -----------------------------------cChH-----HHHHHHHHcCC-ChhheEEECCCH-HHHHHHHH-CC
Confidence 0111 23345566666 678999999995 89877765 59
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
|.|++|..
T Consensus 187 ~~~i~v~~ 194 (226)
T PRK13222 187 CPSVGVTY 194 (226)
T ss_pred CcEEEECc
Confidence 99999863
No 36
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.52 E-value=0.00036 Score=68.89 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=74.8
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
...-|.+..+|+.|+++|.++.++||++-.+...++..+ .|..+||.|++...-|. ..|
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~--------------~i~~~f~~i~~~d~~~~------~Kp- 158 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQM--------------KIGRYFRWIIGGDTLPQ------KKP- 158 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHc--------------CcHhhCeEEEecCCCCC------CCC-
Confidence 344689999999999999999999999988777777653 46788998766421000 000
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
+. .-...+.+.+|. ...+++||||+ ..||..++. .|
T Consensus 159 ------------------------------------~p-----~~~~~~~~~~g~-~~~~~l~IGD~-~~Di~aA~~-aG 194 (272)
T PRK13223 159 ------------------------------------DP-----AALLFVMKMAGV-PPSQSLFVGDS-RSDVLAAKA-AG 194 (272)
T ss_pred ------------------------------------Cc-----HHHHHHHHHhCC-ChhHEEEECCC-HHHHHHHHH-CC
Confidence 01 123346666777 68999999999 699888775 59
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
|+|++|.-
T Consensus 195 i~~i~v~~ 202 (272)
T PRK13223 195 VQCVALSY 202 (272)
T ss_pred CeEEEEec
Confidence 99999854
No 37
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.50 E-value=0.00017 Score=66.30 Aligned_cols=42 Identities=31% Similarity=0.498 Sum_probs=33.7
Q ss_pred HHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecccH
Q 014030 250 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 293 (432)
Q Consensus 250 ~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe 293 (432)
..++-++. ...+++||||+++.||..++ ..||+|++|-+--.
T Consensus 99 ~~l~~~~~-~~~~~l~IGDs~~~Di~aA~-~aGi~~i~v~~g~~ 140 (170)
T TIGR01668 99 RAHPEMGL-TSEQVAVVGDRLFTDVMGGN-RNGSYTILVEPLVH 140 (170)
T ss_pred HHHHHcCC-CHHHEEEECCcchHHHHHHH-HcCCeEEEEccCcC
Confidence 35555676 67899999999999988887 55999999976653
No 38
>PLN02940 riboflavin kinase
Probab=97.50 E-value=0.00025 Score=73.70 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=75.0
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCce
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
..-|.+..+|+.|+++|.++.++||+.-.+++..+.-. ..|.++||.|++...-. ...|
T Consensus 93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~-------------~gl~~~Fd~ii~~d~v~------~~KP-- 151 (382)
T PLN02940 93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCH-------------QGWKESFSVIVGGDEVE------KGKP-- 151 (382)
T ss_pred CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhc-------------cChHhhCCEEEehhhcC------CCCC--
Confidence 44589999999999999999999999998888766532 35899999998854310 0001
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCe
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 283 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gW 283 (432)
...+ ....++.+|. ...++++|||.. .||..++ ..|+
T Consensus 152 -----------------------------------~p~~-----~~~a~~~lgv-~p~~~l~VGDs~-~Di~aA~-~aGi 188 (382)
T PLN02940 152 -----------------------------------SPDI-----FLEAAKRLNV-EPSNCLVIEDSL-PGVMAGK-AAGM 188 (382)
T ss_pred -----------------------------------CHHH-----HHHHHHHcCC-ChhHEEEEeCCH-HHHHHHH-HcCC
Confidence 0112 2335566676 678999999998 5977666 5699
Q ss_pred eEEEeec
Q 014030 284 RTMLVVP 290 (432)
Q Consensus 284 rT~aII~ 290 (432)
++++|--
T Consensus 189 ~~I~v~~ 195 (382)
T PLN02940 189 EVIAVPS 195 (382)
T ss_pred EEEEECC
Confidence 9999853
No 39
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.48 E-value=0.00015 Score=67.62 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCC-CchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceE
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 204 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS-~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~ 204 (432)
-|.+..+|+.|+++|.+++++||+ .-.++..+|.++--.. ..+...--++||.||+.. +| .. ..|.
T Consensus 47 ~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~-----~~~~~~~~~~Fd~iv~~~-~~---~~--~kp~-- 113 (174)
T TIGR01685 47 IKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITY-----AGKTVPMHSLFDDRIEIY-KP---NK--AKQL-- 113 (174)
T ss_pred cccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCC-----CCCcccHHHhceeeeecc-CC---ch--HHHH--
Confidence 478899999999999999999999 8999999988752100 011122338999988853 23 00 0010
Q ss_pred eecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHh--cCcCCCcEEEEcccccccccccccccC
Q 014030 205 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLL--SIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 205 v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll--~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
..+ +..+.+.+ |. ...+++||||... ||.. -+..|
T Consensus 114 -----------------------------------~~i-----~~~~~~~~~~gl-~p~e~l~VgDs~~-di~a-A~~aG 150 (174)
T TIGR01685 114 -----------------------------------EMI-----LQKVNKVDPSVL-KPAQILFFDDRTD-NVRE-VWGYG 150 (174)
T ss_pred -----------------------------------HHH-----HHHhhhcccCCC-CHHHeEEEcChhH-hHHH-HHHhC
Confidence 000 11222333 34 5689999999994 5554 45789
Q ss_pred eeEEEeecc
Q 014030 283 WRTMLVVPE 291 (432)
Q Consensus 283 WrT~aII~E 291 (432)
++|++|..-
T Consensus 151 i~~i~v~~g 159 (174)
T TIGR01685 151 VTSCYCPSG 159 (174)
T ss_pred CEEEEcCCC
Confidence 999999553
No 40
>PLN02811 hydrolase
Probab=97.48 E-value=0.00028 Score=67.04 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEe
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 205 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v 205 (432)
-|.+..+|+.|+++|.++.++||+.-.+....+.-. ..|.++||.|++... |..-. ..|
T Consensus 80 ~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~-------------~~l~~~f~~i~~~~~-~~~~~---~KP---- 138 (220)
T PLN02811 80 MPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRH-------------GELFSLMHHVVTGDD-PEVKQ---GKP---- 138 (220)
T ss_pred CccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHccc-------------HHHHhhCCEEEECCh-hhccC---CCC----
Confidence 478999999999999999999999876443322111 247889998887541 10000 000
Q ss_pred ecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhc---CcCCCcEEEEcccccccccccccccC
Q 014030 206 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLS---IESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 206 ~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~---~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+| ....+.++ . ...+++||||+. .|+..++ ..|
T Consensus 139 ---------------------------------~p~~~-----~~a~~~~~~~~~-~~~~~v~IgDs~-~di~aA~-~aG 177 (220)
T PLN02811 139 ---------------------------------APDIF-----LAAARRFEDGPV-DPGKVLVFEDAP-SGVEAAK-NAG 177 (220)
T ss_pred ---------------------------------CcHHH-----HHHHHHhCCCCC-CccceEEEeccH-hhHHHHH-HCC
Confidence 01122 11233333 4 568999999998 5866665 669
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
++|++|-.
T Consensus 178 ~~~i~v~~ 185 (220)
T PLN02811 178 MSVVMVPD 185 (220)
T ss_pred CeEEEEeC
Confidence 99999954
No 41
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.42 E-value=0.0006 Score=66.71 Aligned_cols=104 Identities=16% Similarity=0.081 Sum_probs=72.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccC-ccEEEEccCCCCCCccCCCCC
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLY-FDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdl-FDvVIv~A~KP~FF~~~~~~~ 201 (432)
+..-|....+|+.|+++|.++.++||+.-..++.++..+ | +.++ ||.|++...-+ . ..|
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~-~-------------l~~~~~d~i~~~~~~~----~--~KP 159 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLA-A-------------AQGYRPDHVVTTDDVP----A--GRP 159 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH-h-------------hcCCCceEEEcCCcCC----C--CCC
Confidence 455689999999999999999999999999988888764 1 2344 48776543200 0 001
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
...+| ....+-+|.....+++||||.. .||..++ ..
T Consensus 160 -------------------------------------~p~~~-----~~a~~~l~~~~~~e~l~IGDs~-~Di~aA~-~a 195 (267)
T PRK13478 160 -------------------------------------YPWMA-----LKNAIELGVYDVAACVKVDDTV-PGIEEGL-NA 195 (267)
T ss_pred -------------------------------------ChHHH-----HHHHHHcCCCCCcceEEEcCcH-HHHHHHH-HC
Confidence 01122 3345556652247899999998 8987776 46
Q ss_pred CeeEEEeec
Q 014030 282 GWRTMLVVP 290 (432)
Q Consensus 282 gWrT~aII~ 290 (432)
|++|++|..
T Consensus 196 G~~~i~v~~ 204 (267)
T PRK13478 196 GMWTVGVIL 204 (267)
T ss_pred CCEEEEEcc
Confidence 999999975
No 42
>PRK11587 putative phosphatase; Provisional
Probab=97.37 E-value=0.00045 Score=65.43 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=68.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.+..+|+.|+++|.++.++||+...++...... .| -.+||.|++... ... ..|
T Consensus 82 ~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~-~~--------------l~~~~~i~~~~~----~~~--~KP- 139 (218)
T PRK11587 82 ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKA-AG--------------LPAPEVFVTAER----VKR--GKP- 139 (218)
T ss_pred ceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHh-cC--------------CCCccEEEEHHH----hcC--CCC-
Confidence 44568999999999999999999999998877655542 12 245777665321 000 001
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
...+| ....+.+|. ...+++||||+. .||..++ ..|
T Consensus 140 ------------------------------------~p~~~-----~~~~~~~g~-~p~~~l~igDs~-~di~aA~-~aG 175 (218)
T PRK11587 140 ------------------------------------EPDAY-----LLGAQLLGL-APQECVVVEDAP-AGVLSGL-AAG 175 (218)
T ss_pred ------------------------------------CcHHH-----HHHHHHcCC-CcccEEEEecch-hhhHHHH-HCC
Confidence 01122 124455676 679999999996 6876665 669
Q ss_pred eeEEEeec
Q 014030 283 WRTMLVVP 290 (432)
Q Consensus 283 WrT~aII~ 290 (432)
+.|++|-.
T Consensus 176 ~~~i~v~~ 183 (218)
T PRK11587 176 CHVIAVNA 183 (218)
T ss_pred CEEEEECC
Confidence 99999853
No 43
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.35 E-value=0.00019 Score=69.12 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=68.1
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANL 202 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~ 202 (432)
+..-|.++.+|.+||+. .++.++||++.. ++. ..+.+|||.|++...-. . ..|
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~--------------~gl~~~fd~i~~~~~~~----~--~KP- 164 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PEL--------------FGLGDYFEFVLRAGPHG----R--SKP- 164 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHH--------------CCcHHhhceeEecccCC----c--CCC-
Confidence 45568899999999875 789999998764 211 24688999888654211 0 001
Q ss_pred eEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccC
Q 014030 203 FQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLG 282 (432)
Q Consensus 203 ~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~g 282 (432)
+..+| ....+.+|. ...+++||||++..||..++ ..|
T Consensus 165 ------------------------------------~p~~~-----~~a~~~~~~-~~~~~~~VGD~~~~Di~~A~-~aG 201 (238)
T PRK10748 165 ------------------------------------FSDMY-----HLAAEKLNV-PIGEILHVGDDLTTDVAGAI-RCG 201 (238)
T ss_pred ------------------------------------cHHHH-----HHHHHHcCC-ChhHEEEEcCCcHHHHHHHH-HCC
Confidence 01121 123445566 57899999999999998877 469
Q ss_pred eeEEEeecc
Q 014030 283 WRTMLVVPE 291 (432)
Q Consensus 283 WrT~aII~E 291 (432)
|+|+.|-+.
T Consensus 202 ~~~i~v~~~ 210 (238)
T PRK10748 202 MQACWINPE 210 (238)
T ss_pred CeEEEEcCC
Confidence 999998664
No 44
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.21 E-value=0.00043 Score=63.37 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=66.3
Q ss_pred hHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecC
Q 014030 129 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPE 208 (432)
Q Consensus 129 l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~ 208 (432)
....|..|++. .++.++|||.-.+++..++.+ .|.+|||.|++...-. . ..|
T Consensus 92 ~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~--------------~l~~~fd~i~~~~~~~----~--~KP------- 143 (188)
T PRK10725 92 LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHL--------------GLRRYFDAVVAADDVQ----H--HKP------- 143 (188)
T ss_pred HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhC--------------CcHhHceEEEehhhcc----C--CCC-------
Confidence 35788888865 799999999999999888874 4789999988853210 0 011
Q ss_pred CCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEe
Q 014030 209 SGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLV 288 (432)
Q Consensus 209 tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aI 288 (432)
...+ .....+.++. ...+++||||. ..||..++ ..||+|++|
T Consensus 144 ------------------------------~p~~-----~~~~~~~~~~-~~~~~l~igDs-~~di~aA~-~aG~~~i~~ 185 (188)
T PRK10725 144 ------------------------------APDT-----FLRCAQLMGV-QPTQCVVFEDA-DFGIQAAR-AAGMDAVDV 185 (188)
T ss_pred ------------------------------ChHH-----HHHHHHHcCC-CHHHeEEEecc-HhhHHHHH-HCCCEEEee
Confidence 0001 1224455565 56899999998 78876665 569999987
No 45
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=97.19 E-value=0.00074 Score=71.53 Aligned_cols=98 Identities=13% Similarity=0.185 Sum_probs=70.6
Q ss_pred cCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceE
Q 014030 125 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 204 (432)
Q Consensus 125 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~ 204 (432)
.-|....+|+.||++|.++.++||+.-+++...++++ +|.+|||.|++.-.-+. .
T Consensus 331 l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~--------------~l~~~f~~i~~~d~v~~---~-------- 385 (459)
T PRK06698 331 LYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYY--------------DLDQWVTETFSIEQINS---L-------- 385 (459)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHC--------------CcHhhcceeEecCCCCC---C--------
Confidence 3578899999999999999999999999999999873 57889999886432000 0
Q ss_pred eecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCee
Q 014030 205 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWR 284 (432)
Q Consensus 205 v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWr 284 (432)
.+..+| ....+-+ ...+++||||+. .||..++ ..|++
T Consensus 386 ---------------------------------~kP~~~-----~~al~~l---~~~~~v~VGDs~-~Di~aAk-~AG~~ 422 (459)
T PRK06698 386 ---------------------------------NKSDLV-----KSILNKY---DIKEAAVVGDRL-SDINAAK-DNGLI 422 (459)
T ss_pred ---------------------------------CCcHHH-----HHHHHhc---CcceEEEEeCCH-HHHHHHH-HCCCe
Confidence 000111 1111112 246899999997 9987775 66999
Q ss_pred EEEeec
Q 014030 285 TMLVVP 290 (432)
Q Consensus 285 T~aII~ 290 (432)
|++|-.
T Consensus 423 ~I~v~~ 428 (459)
T PRK06698 423 AIGCNF 428 (459)
T ss_pred EEEEeC
Confidence 999855
No 46
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.12 E-value=0.00097 Score=61.19 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=68.4
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCC---------------chhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSL---------------WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 186 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~---------------~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv 186 (432)
.+..-|.+..+|++|+++|.+++++||.. ..+++.+...+ ++. ||-+++
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~--------------gl~--fd~ii~ 90 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ--------------GII--FDDVLI 90 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC--------------CCc--eeEEEE
Confidence 45567899999999999999999999963 33333333332 233 876665
Q ss_pred ccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEE
Q 014030 187 GSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYV 266 (432)
Q Consensus 187 ~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~ 266 (432)
.+.+|. +. . +..+ +. -+-+..+.+.++. ...+++||
T Consensus 91 ~~~~~~---~~--~---------~~~K-------------------------P~----~~~~~~~~~~~~~-~~~e~l~I 126 (161)
T TIGR01261 91 CPHFPD---DN--C---------DCRK-------------------------PK----IKLLEPYLKKNLI-DKARSYVI 126 (161)
T ss_pred CCCCCC---CC--C---------CCCC-------------------------CC----HHHHHHHHHHcCC-CHHHeEEE
Confidence 533331 10 0 0000 00 1223445666665 56899999
Q ss_pred cccccccccccccccCeeEEEeec
Q 014030 267 GDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 267 GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
||. ..|+..++ ..||.|++|-+
T Consensus 127 GD~-~~Di~~A~-~aGi~~i~~~~ 148 (161)
T TIGR01261 127 GDR-ETDMQLAE-NLGIRGIQYDE 148 (161)
T ss_pred eCC-HHHHHHHH-HCCCeEEEECh
Confidence 998 67987766 66999999854
No 47
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=97.09 E-value=0.00099 Score=59.08 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=40.5
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 187 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~ 187 (432)
.|.+..+|..|+++|.++.++||+....+...+.+. . .++|+.|++.
T Consensus 66 ~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l--------------~~~f~~i~~~ 112 (154)
T TIGR01549 66 IRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L--------------GDYFDLILGS 112 (154)
T ss_pred ccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H--------------HhcCcEEEec
Confidence 578999999999999999999999999999999886 2 3468887753
No 48
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.01 E-value=0.0031 Score=56.37 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=31.0
Q ss_pred HHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEee
Q 014030 248 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 289 (432)
Q Consensus 248 ~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII 289 (432)
+..+++.++. ...+++||||+ ..||..++ ..||+|++|.
T Consensus 107 ~~~~~~~~~~-~~~e~i~IGDs-~~Di~~A~-~~Gi~~v~i~ 145 (147)
T TIGR01656 107 ILEALKRLGV-DASRSLVVGDR-LRDLQAAR-NAGLAAVLLV 145 (147)
T ss_pred HHHHHHHcCC-ChHHEEEEcCC-HHHHHHHH-HCCCCEEEec
Confidence 3446666776 67899999999 88987775 6799999985
No 49
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.01 E-value=0.0016 Score=60.00 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeec
Q 014030 250 HLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 250 ~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
...+.+|. ...+++||||+. .||..++ ..||++++|-.
T Consensus 111 ~~~~~l~~-~~~~~~~VgDs~-~Di~~A~-~aG~~~i~v~~ 148 (181)
T PRK08942 111 SIAERLNI-DLAGSPMVGDSL-RDLQAAA-AAGVTPVLVRT 148 (181)
T ss_pred HHHHHcCC-ChhhEEEEeCCH-HHHHHHH-HCCCeEEEEcC
Confidence 35566676 678999999997 5987776 56998888754
No 50
>PRK06769 hypothetical protein; Validated
Probab=97.01 E-value=0.00098 Score=61.48 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeeccc
Q 014030 249 GHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 292 (432)
Q Consensus 249 ~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~EL 292 (432)
...++.++. .-.+++||||+. .|+..++ ..||+|++|-+.-
T Consensus 100 ~~~~~~l~~-~p~~~i~IGD~~-~Di~aA~-~aGi~~i~v~~g~ 140 (173)
T PRK06769 100 LQAAEKHGL-DLTQCAVIGDRW-TDIVAAA-KVNATTILVRTGA 140 (173)
T ss_pred HHHHHHcCC-CHHHeEEEcCCH-HHHHHHH-HCCCeEEEEecCC
Confidence 445566676 578999999997 8988776 5599999997643
No 51
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.90 E-value=0.00066 Score=66.28 Aligned_cols=101 Identities=30% Similarity=0.463 Sum_probs=68.6
Q ss_pred cccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccC----CCCCC
Q 014030 119 PKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSA----KPGFF 194 (432)
Q Consensus 119 p~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~----KP~FF 194 (432)
|+-|..-++.+ .+|++||+.| +.|.+||.|+.--....=.+| =..|||.||+++. ||
T Consensus 109 ~~~~~~~~~~~-~~lq~lR~~g--~~l~iisN~d~r~~~~l~~~~-------------l~~~fD~vv~S~e~g~~KP--- 169 (237)
T KOG3085|consen 109 PSAWKYLDGMQ-ELLQKLRKKG--TILGIISNFDDRLRLLLLPLG-------------LSAYFDFVVESCEVGLEKP--- 169 (237)
T ss_pred ccCceeccHHH-HHHHHHHhCC--eEEEEecCCcHHHHHHhhccC-------------HHHhhhhhhhhhhhccCCC---
Confidence 44455555545 9999999999 555556656554443332233 2389999998754 33
Q ss_pred ccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccc
Q 014030 195 HEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDI 274 (432)
Q Consensus 195 ~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di 274 (432)
+ .+||+ ..++.++. ...+|+++||..--|+
T Consensus 170 -D-------------------------------------------p~If~-----~al~~l~v-~Pee~vhIgD~l~nD~ 199 (237)
T KOG3085|consen 170 -D-------------------------------------------PRIFQ-----LALERLGV-KPEECVHIGDLLENDY 199 (237)
T ss_pred -C-------------------------------------------hHHHH-----HHHHHhCC-ChHHeEEecCcccccc
Confidence 1 12442 25666776 5789999999999997
Q ss_pred cccccccCeeEEEee
Q 014030 275 LRSKKVLGWRTMLVV 289 (432)
Q Consensus 275 ~~skk~~gWrT~aII 289 (432)
..++ ..||+|.+|.
T Consensus 200 ~gA~-~~G~~ailv~ 213 (237)
T KOG3085|consen 200 EGAR-NLGWHAILVD 213 (237)
T ss_pred HhHH-HcCCEEEEEc
Confidence 6665 6799999998
No 52
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=96.84 E-value=0.0034 Score=57.75 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=24.6
Q ss_pred cCCChHHHHHHHHhcCCeEEEeeCCCc
Q 014030 125 EDRSIVPMLKMLRESGRSTFLVTNSLW 151 (432)
Q Consensus 125 k~~~l~~~L~~lr~~GKklFLiTNS~~ 151 (432)
.-|.+..+|..|+++|.++.++||++-
T Consensus 27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~ 53 (176)
T TIGR00213 27 FIDGVIDALRELKKMGYALVLVTNQSG 53 (176)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 357899999999999999999999984
No 53
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.78 E-value=0.0013 Score=62.07 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=68.9
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCcc-EEEEcc----CCCCCCc
Q 014030 121 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFD-VVITGS----AKPGFFH 195 (432)
Q Consensus 121 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFD-vVIv~A----~KP~FF~ 195 (432)
..+...|.+..+|+.| +.++.++||++-.+++..+..+ +..++|| +|++.. .||
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~--------------~l~~~F~~~v~~~~~~~~~KP---- 143 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKT--------------GMLHYFPDKLFSGYDIQRWKP---- 143 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhc--------------ChHHhCcceEeeHHhcCCCCC----
Confidence 3456678999999999 3799999999988888877653 4578895 555432 122
Q ss_pred cCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccc
Q 014030 196 EDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDIL 275 (432)
Q Consensus 196 ~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~ 275 (432)
...+| ....+-++. ...+++||||+. .||.
T Consensus 144 -------------------------------------------~p~~~-----~~a~~~~~~-~p~~~l~igDs~-~di~ 173 (221)
T PRK10563 144 -------------------------------------------DPALM-----FHAAEAMNV-NVENCILVDDSS-AGAQ 173 (221)
T ss_pred -------------------------------------------ChHHH-----HHHHHHcCC-CHHHeEEEeCcH-hhHH
Confidence 01122 224555676 578999999998 6887
Q ss_pred ccccccCeeEEEee
Q 014030 276 RSKKVLGWRTMLVV 289 (432)
Q Consensus 276 ~skk~~gWrT~aII 289 (432)
.++ ..|++|+++.
T Consensus 174 aA~-~aG~~~i~~~ 186 (221)
T PRK10563 174 SGI-AAGMEVFYFC 186 (221)
T ss_pred HHH-HCCCEEEEEC
Confidence 666 6699999885
No 54
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.72 E-value=0.0034 Score=58.38 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=39.7
Q ss_pred hHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 014030 129 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 188 (432)
Q Consensus 129 l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A 188 (432)
...+|+.|++.|.++.++||++-.++...++.+ .|..|||.|++..
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~--------------gl~~~f~~~~~~~ 156 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTH--------------GLEILFPVQIWME 156 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHc--------------CchhhCCEEEeec
Confidence 378999999999999999999999999988864 4678999888743
No 55
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=96.25 E-value=0.011 Score=54.43 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=29.6
Q ss_pred hCcccccccCCChHHHHHHHHhcCCeEEEeeCCCch
Q 014030 117 KDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWD 152 (432)
Q Consensus 117 ~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~ 152 (432)
.+|++....-|.+..+|++|+++|.++.++||.+-.
T Consensus 35 ~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~ 70 (166)
T TIGR01664 35 TSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGI 70 (166)
T ss_pred CChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 456665555688999999999999999999998753
No 56
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.07 E-value=0.0099 Score=69.47 Aligned_cols=103 Identities=15% Similarity=0.209 Sum_probs=75.8
Q ss_pred cCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCC-ccCccEEEEccCCCCCCccCCCCCce
Q 014030 125 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDW-LLYFDVVITGSAKPGFFHEDNRANLF 203 (432)
Q Consensus 125 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dW-rdlFDvVIv~A~KP~FF~~~~~~~~~ 203 (432)
..|.+..+|+.|+++|.++.++||+.-.+++.++..+ .| .++||.|++.-.-. . ..|
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~--------------gl~~~~Fd~iv~~~~~~----~--~KP-- 219 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAA--------------GLPLSMFDAIVSADAFE----N--LKP-- 219 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHc--------------CCChhHCCEEEECcccc----c--CCC--
Confidence 3689999999999999999999999999999888764 35 47899987643100 0 000
Q ss_pred EeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCe
Q 014030 204 QVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGW 283 (432)
Q Consensus 204 ~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gW 283 (432)
...+| ....+.++. ...+++||||.. .||..++ ..||
T Consensus 220 -----------------------------------~Pe~~-----~~a~~~lgv-~p~e~v~IgDs~-~Di~AA~-~aGm 256 (1057)
T PLN02919 220 -----------------------------------APDIF-----LAAAKILGV-PTSECVVIEDAL-AGVQAAR-AAGM 256 (1057)
T ss_pred -----------------------------------CHHHH-----HHHHHHcCc-CcccEEEEcCCH-HHHHHHH-HcCC
Confidence 11233 235566677 678999999997 5866665 6699
Q ss_pred eEEEeeccc
Q 014030 284 RTMLVVPEL 292 (432)
Q Consensus 284 rT~aII~EL 292 (432)
+|++|....
T Consensus 257 ~~I~v~~~~ 265 (1057)
T PLN02919 257 RCIAVTTTL 265 (1057)
T ss_pred EEEEECCCC
Confidence 999998764
No 57
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.04 E-value=0.0014 Score=64.37 Aligned_cols=102 Identities=11% Similarity=0.097 Sum_probs=65.6
Q ss_pred ChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc-CCCCCCccCCCCCceEee
Q 014030 128 SIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS-AKPGFFHEDNRANLFQVE 206 (432)
Q Consensus 128 ~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A-~KP~FF~~~~~~~~~~v~ 206 (432)
.+...++.|++.|+++|+.||++-.|....... ..+-.+|+.|.... ++|.++.. |
T Consensus 124 ~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~--------------~g~g~~~~~i~~~~~~~~~~~gK----P----- 180 (257)
T TIGR01458 124 ILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLA--------------LDVGPFVTALEYATDTKATVVGK----P----- 180 (257)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCC--------------CCchHHHHHHHHHhCCCceeecC----C-----
Confidence 455667788888888999999888776533321 24566777666432 23322221 1
Q ss_pred cCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEE
Q 014030 207 PESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTM 286 (432)
Q Consensus 207 ~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~ 286 (432)
...+| ....+.++. ...++++|||++..||.-++ ..||+|+
T Consensus 181 --------------------------------~p~~~-----~~~~~~~~~-~~~~~~~vGD~~~~Di~~a~-~~G~~~i 221 (257)
T TIGR01458 181 --------------------------------SKTFF-----LEALRATGC-EPEEAVMIGDDCRDDVGGAQ-DCGMRGI 221 (257)
T ss_pred --------------------------------CHHHH-----HHHHHHhCC-ChhhEEEECCCcHHHHHHHH-HcCCeEE
Confidence 01122 123444565 57999999999999988777 5599999
Q ss_pred Eeecc
Q 014030 287 LVVPE 291 (432)
Q Consensus 287 aII~E 291 (432)
+|..-
T Consensus 222 ~v~~G 226 (257)
T TIGR01458 222 QVRTG 226 (257)
T ss_pred EECCC
Confidence 99543
No 58
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=95.99 E-value=0.02 Score=59.24 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=66.2
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCC----chhhHH-------HHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSL----WDYTTI-------VMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 191 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~----~~yt~~-------~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP 191 (432)
+...|.+..+|..|+++|.+++++||.+ -.|... .|.-++.. ..+ +||.|+..+..|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~----------~gl--~fd~i~i~~~~~ 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFES----------QGI--KFDEVLICPHFP 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHH----------cCC--ceeeEEEeCCcC
Confidence 5557899999999999999999999951 112211 22223321 122 277766655333
Q ss_pred CCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccc
Q 014030 192 GFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIY 271 (432)
Q Consensus 192 ~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~ 271 (432)
++. . . .++ .+ .+-+..+.+.++. ...+++||||..
T Consensus 97 ---sd~-~-~-------~rK--------------------------P~-----p~~l~~a~~~l~v-~~~~svmIGDs~- 131 (354)
T PRK05446 97 ---EDN-C-S-------CRK--------------------------PK-----TGLVEEYLAEGAI-DLANSYVIGDRE- 131 (354)
T ss_pred ---ccc-C-C-------CCC--------------------------CC-----HHHHHHHHHHcCC-CcccEEEEcCCH-
Confidence 110 0 0 000 00 1123334455565 578999999985
Q ss_pred ccccccccccCeeEEEeec
Q 014030 272 GDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 272 ~Di~~skk~~gWrT~aII~ 290 (432)
+|+..++ ..|+++++|=|
T Consensus 132 sDi~aAk-~aGi~~I~v~~ 149 (354)
T PRK05446 132 TDVQLAE-NMGIKGIRYAR 149 (354)
T ss_pred HHHHHHH-HCCCeEEEEEC
Confidence 8987776 66999999844
No 59
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.62 E-value=0.04 Score=50.60 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=34.7
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
...|....+|+.|+++|.+++++||+.-.++..++..+
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 117 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKL 117 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHh
Confidence 45688999999999999999999999999999998875
No 60
>PHA02597 30.2 hypothetical protein; Provisional
Probab=95.51 E-value=0.023 Score=52.60 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=62.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh-ccCCCCCCCCCCCCCCccCccEEEEccC-CCCCCccCCCC
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL-CGSHTLDGGITCNSDWLLYFDVVITGSA-KPGFFHEDNRA 200 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl-~g~~~~~~~~~~~~dWrdlFDvVIv~A~-KP~FF~~~~~~ 200 (432)
+..-|....+|++|++.+ +++++||..-.........+ +. .-|-++|+.||+... ||.
T Consensus 73 ~~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~-----------~~f~~~f~~i~~~~~~~~k-------- 132 (197)
T PHA02597 73 LSAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLN-----------ALFPGAFSEVLMCGHDESK-------- 132 (197)
T ss_pred ccCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHH-----------HhCCCcccEEEEeccCccc--------
Confidence 455788999999999987 57788997766555444332 11 223346666665332 210
Q ss_pred CceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccc
Q 014030 201 NLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKV 280 (432)
Q Consensus 201 ~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~ 280 (432)
| .+ .....+.+| ..+++||||...+ +..++..
T Consensus 133 p---------------------------------------~~-----~~~a~~~~~---~~~~v~vgDs~~d-i~aA~~a 164 (197)
T PHA02597 133 E---------------------------------------KL-----FIKAKEKYG---DRVVCFVDDLAHN-LDAAHEA 164 (197)
T ss_pred H---------------------------------------HH-----HHHHHHHhC---CCcEEEeCCCHHH-HHHHHHH
Confidence 0 00 111233333 3568999999988 6666654
Q ss_pred c-CeeEEEeecc
Q 014030 281 L-GWRTMLVVPE 291 (432)
Q Consensus 281 ~-gWrT~aII~E 291 (432)
. |+.|+.+-..
T Consensus 165 ~~Gi~~i~~~~~ 176 (197)
T PHA02597 165 LSQLPVIHMLRG 176 (197)
T ss_pred HcCCcEEEecch
Confidence 3 9999999655
No 61
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=95.06 E-value=0.054 Score=50.85 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=35.0
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
+...|..+.+|+.|+++|.++.++||+.-.++..++..+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~ 122 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKL 122 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 456789999999999999999999999999988888764
No 62
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=95.05 E-value=0.0064 Score=60.12 Aligned_cols=37 Identities=35% Similarity=0.549 Sum_probs=30.8
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCeeEEEee
Q 014030 251 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 289 (432)
Q Consensus 251 l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII 289 (432)
+.+.++. ...+++||||.+..||.-++. .||+|++|-
T Consensus 211 ~~~~~~~-~~~~~lmIGD~~~tDI~~A~~-aGi~si~V~ 247 (279)
T TIGR01452 211 ITENFSI-DPARTLMVGDRLETDILFGHR-CGMTTVLVL 247 (279)
T ss_pred HHHHhCC-ChhhEEEECCChHHHHHHHHH-cCCcEEEEC
Confidence 4555676 578999999999999988874 699999994
No 63
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=94.80 E-value=0.14 Score=48.52 Aligned_cols=40 Identities=8% Similarity=0.147 Sum_probs=36.6
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 162 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 162 (432)
+...|.+..+|+.|+++|.+++++||+.-.|+..++..++
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 112 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLI 112 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhC
Confidence 5667999999999999999999999999999999998763
No 64
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=94.70 E-value=0.024 Score=49.73 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCC-CchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNS-LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 191 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS-~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP 191 (432)
-|.+..+|+.||++|.++.++||+ .-+++..++... |. . +.-..+.++||.+++...||
T Consensus 31 ~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~-~~-~-----~~i~~l~~~f~~~~~~~~~p 90 (128)
T TIGR01681 31 IKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIF-ED-F-----GIIFPLAEYFDPLTIGYWLP 90 (128)
T ss_pred HHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhc-cc-c-----ccchhhHhhhhhhhhcCCCc
Confidence 367889999999999999999999 899999888764 21 0 00011688999888875554
No 65
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=94.69 E-value=0.2 Score=50.00 Aligned_cols=31 Identities=45% Similarity=0.661 Sum_probs=26.5
Q ss_pred CcEEEEcccccccccccccccCeeEEEeeccc
Q 014030 261 SQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 292 (432)
Q Consensus 261 ~~VLY~GDhI~~Di~~skk~~gWrT~aII~EL 292 (432)
+++|-|||.+.+||.-.+ ..||.|++|.-=.
T Consensus 208 ~~~~mVGD~~~TDI~~a~-~~G~~t~LV~TGv 238 (269)
T COG0647 208 SEVLMVGDRLDTDILGAK-AAGLDTLLVLTGV 238 (269)
T ss_pred ccEEEEcCCchhhHHHHH-HcCCCEEEEccCC
Confidence 599999999999998887 5599999996433
No 66
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.58 E-value=0.055 Score=54.72 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=40.4
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh---hccCCCCCCCCCCCCCCccCccEEEEc
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF---LCGSHTLDGGITCNSDWLLYFDVVITG 187 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y---l~g~~~~~~~~~~~~dWrdlFDvVIv~ 187 (432)
|.+..+|..|++.|.++.++||.+...+..++.. ++| -.++||.|+..
T Consensus 34 ~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~-------------~~~~f~~~~~~ 84 (320)
T TIGR01686 34 KTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFIL-------------QAEDFDARSIN 84 (320)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccC-------------cHHHeeEEEEe
Confidence 5688999999999999999999999999999886 223 35789888665
No 67
>PLN02954 phosphoserine phosphatase
Probab=94.52 E-value=0.22 Score=46.86 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=34.1
Q ss_pred cCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 125 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 125 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
..|.+..+|+.|+++|.++.++||+.-.++..++..+
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~ 121 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAIL 121 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHh
Confidence 4689999999999999999999999999999998873
No 68
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=94.48 E-value=0.012 Score=56.77 Aligned_cols=38 Identities=39% Similarity=0.475 Sum_probs=28.4
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCeeEEEee
Q 014030 251 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVV 289 (432)
Q Consensus 251 l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII 289 (432)
..+.++.....+++||||.+..||.-++ ..|++|++|.
T Consensus 204 ~~~~~~~~~~~~~~~vGD~~~~Di~~a~-~~G~~~i~v~ 241 (242)
T TIGR01459 204 ALKECSNIPKNRMLMVGDSFYTDILGAN-RLGIDTALVL 241 (242)
T ss_pred HHHHcCCCCcccEEEECCCcHHHHHHHH-HCCCeEEEEe
Confidence 4444554123589999999999998877 4599999873
No 69
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.28 E-value=0.18 Score=47.01 Aligned_cols=29 Identities=34% Similarity=0.674 Sum_probs=23.6
Q ss_pred CCCcEEEEcccccccccccccccCeeEEEe
Q 014030 259 SSSQVLYVGDHIYGDILRSKKVLGWRTMLV 288 (432)
Q Consensus 259 ~G~~VLY~GDhI~~Di~~skk~~gWrT~aI 288 (432)
+..+++-|||.++.||+-.... |-.|++|
T Consensus 135 ~p~eiavIGDrl~TDVl~gN~~-G~~tilv 163 (168)
T PF09419_consen 135 SPSEIAVIGDRLFTDVLMGNRM-GSYTILV 163 (168)
T ss_pred CchhEEEEcchHHHHHHHhhcc-CceEEEE
Confidence 4689999999999999999864 6556554
No 70
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=94.25 E-value=0.095 Score=50.81 Aligned_cols=161 Identities=17% Similarity=0.198 Sum_probs=97.8
Q ss_pred HHHHHHHhcCCCCCCCC-----CChHHHHHHHHHHHHHhhcc---hhhHHHHHh-CcccccccCCChHHHHHHHHhcCCe
Q 014030 72 AQLVDFMDNNPGKDSKS-----TDYVRMYKDVRAAVDLCHRD---GTLKQMVAK-DPKTYINEDRSIVPMLKMLRESGRS 142 (432)
Q Consensus 72 a~lVd~~d~~~~~~~~~-----~~y~~l~~DV~~av~~~H~~---G~l~~~v~~-np~kYi~k~~~l~~~L~~lr~~GKk 142 (432)
..|.+||...-+--..+ .+|..-|.=--+++..+|.. -.+++-|-. .|-.+|.||+.|+++|..||+.+
T Consensus 39 ~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~t~aGL~~~~~~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~-- 116 (244)
T KOG3109|consen 39 NNIQEFFVEKLGISEEEAEELRESLYKEYGLTMAGLKAVGYIFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR-- 116 (244)
T ss_pred HHHHHHHHHHhCCChhhhHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--
Confidence 35677876543211111 12334444445566666532 235555543 46677999999999999999987
Q ss_pred EEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCccccCCCCCCCC
Q 014030 143 TFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMP 222 (432)
Q Consensus 143 lFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~ 222 (432)
..+-||++=.-+..+.+.| | =.|.||.||+--- . .|. ++-..
T Consensus 117 k~~FTNa~k~HA~r~Lk~L-G-------------ieDcFegii~~e~------~---np~-----~~~~v---------- 158 (244)
T KOG3109|consen 117 KWIFTNAYKVHAIRILKKL-G-------------IEDCFEGIICFET------L---NPI-----EKTVV---------- 158 (244)
T ss_pred EEEecCCcHHHHHHHHHHh-C-------------hHHhccceeEeec------c---CCC-----CCcee----------
Confidence 4456999999999999996 3 2689999987321 1 121 11000
Q ss_pred ccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeeccc
Q 014030 223 QVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPEL 292 (432)
Q Consensus 223 ~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~EL 292 (432)
+.|. .+......+..|+.+..++++|-|+ .+-|...| ..||+|++|-.|=
T Consensus 159 -cKP~-----------------~~afE~a~k~agi~~p~~t~FfDDS-~~NI~~ak-~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 159 -CKPS-----------------EEAFEKAMKVAGIDSPRNTYFFDDS-ERNIQTAK-EVGLKTVLVGREH 208 (244)
T ss_pred -ecCC-----------------HHHHHHHHHHhCCCCcCceEEEcCc-hhhHHHHH-hccceeEEEEeee
Confidence 0010 1223445666676434566666555 56677666 5599999998765
No 71
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=94.06 E-value=0.1 Score=52.73 Aligned_cols=68 Identities=25% Similarity=0.222 Sum_probs=54.3
Q ss_pred cchhhHHHHHhCccccc-ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 014030 107 RDGTLKQMVAKDPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 185 (432)
Q Consensus 107 ~~G~l~~~v~~np~kYi-~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVI 185 (432)
.||+|-.. ++=| .+||.+..+|.+|+++|.++.|+||+.-+++...|+.+ | ..+|||+||
T Consensus 133 LDgTLi~~-----~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~l-G-------------Ld~YFdvII 193 (301)
T TIGR01684 133 LDSTLITD-----EEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKV-K-------------LDRYFDIII 193 (301)
T ss_pred cCCCCcCC-----CCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHc-C-------------CCcccCEEE
Confidence 46777533 3333 56899999999999999999999999999999888873 3 467999999
Q ss_pred EccCCCCC
Q 014030 186 TGSAKPGF 193 (432)
Q Consensus 186 v~A~KP~F 193 (432)
++.....-
T Consensus 194 s~Gdv~~~ 201 (301)
T TIGR01684 194 SGGHKAEE 201 (301)
T ss_pred ECCccccC
Confidence 98876443
No 72
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.50 E-value=0.25 Score=45.68 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.6
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
.|....+|+.++++|.++.++|||+-.++..+++++
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~l 124 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARIL 124 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHc
Confidence 467889999999999999999999999999999864
No 73
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=93.34 E-value=0.17 Score=51.29 Aligned_cols=66 Identities=23% Similarity=0.221 Sum_probs=52.2
Q ss_pred cchhhHHHHHhCccccc-ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 014030 107 RDGTLKQMVAKDPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 185 (432)
Q Consensus 107 ~~G~l~~~v~~np~kYi-~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVI 185 (432)
.||+|-.. ++=| .++|.+..+|.+|+++|.++.++||.+-+++...+..+ ...++||+||
T Consensus 135 ~D~TL~~~-----~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~l--------------gL~~yFDvII 195 (303)
T PHA03398 135 LDSTLITD-----EEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKET--------------KLEGYFDIII 195 (303)
T ss_pred cCCCccCC-----CCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHc--------------CCCccccEEE
Confidence 46776543 3333 56899999999999999999999999999998888764 2468999999
Q ss_pred EccCCC
Q 014030 186 TGSAKP 191 (432)
Q Consensus 186 v~A~KP 191 (432)
+.....
T Consensus 196 ~~g~i~ 201 (303)
T PHA03398 196 CGGRKA 201 (303)
T ss_pred ECCCcc
Confidence 987644
No 74
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=93.27 E-value=0.66 Score=43.82 Aligned_cols=59 Identities=7% Similarity=0.071 Sum_probs=44.2
Q ss_pred HHHHhhcchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 101 AVDLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 101 av~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
.+...+.+. ++++.+-..+.+.-.|.+..+|+.|+++|.++.++|||.-.|+..++..+
T Consensus 49 ~~~~~~~~~--~~~~~~~~~~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 49 MFGLLPSSL--KEEITSFVLETAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred HHhhCCCch--HHHHHHHHHhcCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 334444433 23444433334667899999999999999999999999999999999876
No 75
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=93.22 E-value=0.043 Score=49.60 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=32.6
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 186 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv 186 (432)
..-|....+|+ ++.++||++-.+....+..+ ...++||.||+
T Consensus 90 ~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~--------------~l~~~fd~v~~ 131 (175)
T TIGR01493 90 PPWPDSAAALA-------RVAILSNASHWAFDQFAQQA--------------GLPWYFDRAFS 131 (175)
T ss_pred CCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHC--------------CCHHHHhhhcc
Confidence 35677888887 37899999999999888764 24778998754
No 76
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=93.09 E-value=0.064 Score=49.75 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 131 PMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 131 ~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
.-+++|+++|.++.++||.+..+++..+..+
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l 71 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEEL 71 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHC
Confidence 4577888999999999999999999999987
No 77
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=92.93 E-value=0.34 Score=46.15 Aligned_cols=103 Identities=25% Similarity=0.299 Sum_probs=74.0
Q ss_pred ccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCC
Q 014030 122 YINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRAN 201 (432)
Q Consensus 122 Yi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~ 201 (432)
.....|.++..|..|+++|.+++++||-+-.+++.+... +| +.+|||+|++... ++.. .|
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~-~g-------------l~~~F~~i~g~~~---~~~~---KP 146 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKA-LG-------------LADYFDVIVGGDD---VPPP---KP 146 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHH-hC-------------CccccceEEcCCC---CCCC---Cc
Confidence 456689999999999999999999999999999999998 33 5899999999222 1111 11
Q ss_pred ceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEccccccccccccccc
Q 014030 202 LFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVL 281 (432)
Q Consensus 202 ~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~ 281 (432)
+|. ....+++.++. ...+++||||.+. ||..++..
T Consensus 147 --------------------------~P~----------------~l~~~~~~~~~-~~~~~l~VGDs~~-Di~aA~~A- 181 (220)
T COG0546 147 --------------------------DPE----------------PLLLLLEKLGL-DPEEALMVGDSLN-DILAAKAA- 181 (220)
T ss_pred --------------------------CHH----------------HHHHHHHHhCC-ChhheEEECCCHH-HHHHHHHc-
Confidence 000 01235566676 3459999999985 77777654
Q ss_pred CeeEEEee
Q 014030 282 GWRTMLVV 289 (432)
Q Consensus 282 gWrT~aII 289 (432)
|-.|++|-
T Consensus 182 g~~~v~v~ 189 (220)
T COG0546 182 GVPAVGVT 189 (220)
T ss_pred CCCEEEEE
Confidence 56666664
No 78
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=92.84 E-value=0.15 Score=46.81 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=33.5
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhcc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 163 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 163 (432)
-|+...+|+.||++|.++.++|+.+...+..+.+. +|
T Consensus 129 ~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~-lg 165 (215)
T PF00702_consen 129 RPGAKEALQELKEAGIKVAILTGDNESTASAIAKQ-LG 165 (215)
T ss_dssp HTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHH-TT
T ss_pred hhhhhhhhhhhhccCcceeeeeccccccccccccc-cc
Confidence 37899999999999999999999999999999986 45
No 79
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=92.66 E-value=0.088 Score=41.66 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=35.3
Q ss_pred HHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecccH
Q 014030 248 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 293 (432)
Q Consensus 248 ~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe 293 (432)
.....+.++. ...++++|||.+..||.-.+ ..||+|++|.--..
T Consensus 10 ~~~a~~~~~~-~~~~~~~VGD~~~~Di~~a~-~~G~~~ilV~tG~~ 53 (75)
T PF13242_consen 10 LEQALKRLGV-DPSRCVMVGDSLETDIEAAK-AAGIDTILVLTGVY 53 (75)
T ss_dssp HHHHHHHHTS-GGGGEEEEESSTTTHHHHHH-HTTSEEEEESSSSS
T ss_pred HHHHHHHcCC-CHHHEEEEcCCcHhHHHHHH-HcCCcEEEECCCCC
Confidence 3456666676 57899999999999998887 56999999976553
No 80
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=91.67 E-value=0.41 Score=42.84 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=43.5
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 014030 121 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 188 (432)
Q Consensus 121 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A 188 (432)
-++..-|.+..+|..|+ .|.++.++||+.-+|+..++..+ | ..+ .+||.|++..
T Consensus 42 ~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l-~-----------~~~-~~f~~i~~~~ 95 (148)
T smart00577 42 VYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLL-D-----------PKK-YFGYRRLFRD 95 (148)
T ss_pred EEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHh-C-----------cCC-CEeeeEEECc
Confidence 34555799999999998 57999999999999999999875 3 223 5679888754
No 81
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=91.47 E-value=0.14 Score=46.30 Aligned_cols=30 Identities=13% Similarity=0.029 Sum_probs=26.7
Q ss_pred HHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 132 MLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 132 ~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
.|++|+++|.+++++||.+...+..++..+
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~ 65 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTL 65 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHc
Confidence 699999999999999999998888777654
No 82
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=91.39 E-value=0.57 Score=42.29 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=43.3
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 187 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~ 187 (432)
+...|.+..+|+.|++.|-++.++||+.-.++..++..+ .|.++||.|++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~--------------~l~~~f~~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGI--------------GEKDVFIEIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHc--------------CChhheeEEecc
Confidence 455678999999999999999999999999988888763 468899988853
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=90.96 E-value=0.38 Score=46.39 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=37.7
Q ss_pred cCCChHHHHHHHHhcCCeEEEeeCCCchhhH--HHHHhhccCCCCCCCCCCCCCCcc-CccEEEEcc
Q 014030 125 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTT--IVMNFLCGSHTLDGGITCNSDWLL-YFDVVITGS 188 (432)
Q Consensus 125 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~--~~M~yl~g~~~~~~~~~~~~dWrd-lFDvVIv~A 188 (432)
.-|....+|++|+++|+++.++||+.-+... ..+..+ .... +||.||+.+
T Consensus 25 ~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~--------------gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 25 TYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSL--------------GINADLPEMIISSG 77 (242)
T ss_pred cCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHC--------------CCCccccceEEccH
Confidence 3578899999999999999999999876554 223322 2334 899999876
No 84
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=90.76 E-value=0.72 Score=45.17 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=45.9
Q ss_pred hhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCC----chhhHHHHHhhccCCCCCCCCCCCCCCccCccEEE
Q 014030 110 TLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSL----WDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVI 185 (432)
Q Consensus 110 ~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~----~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVI 185 (432)
.+.+...++...+..+-|....+|+.|++.|.++|+|||.. -..++.++. .+|.+. .++|++++
T Consensus 100 ~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk-~~gip~-----------~~~f~vil 167 (237)
T PRK11009 100 KFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLAD-DFHIPA-----------DNMNPVIF 167 (237)
T ss_pred HHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHH-HcCCCc-----------ccceeEEE
Confidence 34455555556666667779999999999999999999954 335555555 334211 45888877
Q ss_pred Ecc
Q 014030 186 TGS 188 (432)
Q Consensus 186 v~A 188 (432)
++.
T Consensus 168 ~gd 170 (237)
T PRK11009 168 AGD 170 (237)
T ss_pred cCC
Confidence 654
No 85
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=89.05 E-value=1 Score=44.03 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=38.8
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEeeCC----CchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 014030 120 KTYINEDRSIVPMLKMLRESGRSTFLVTNS----LWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 187 (432)
Q Consensus 120 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS----~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~ 187 (432)
+....+-+....+|..++++|.++|++||. .=.+++.++..+ | ..++|++|+..
T Consensus 110 ~~~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~l-G-------------i~~~f~~i~~~ 167 (237)
T TIGR01672 110 DEFSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNF-H-------------IPAMNPVIFAG 167 (237)
T ss_pred ccCCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHh-C-------------CchheeEEECC
Confidence 344444445889999999999999999999 444666666553 3 24689887553
No 86
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=88.41 E-value=0.34 Score=47.26 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=30.7
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeecc
Q 014030 251 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPE 291 (432)
Q Consensus 251 l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~E 291 (432)
+.+.++. +..+++||||++..||.-+++ .||+|++|-.-
T Consensus 187 ~~~~~~~-~~~~~~~VGD~~~~Di~~a~~-~G~~~v~v~~G 225 (249)
T TIGR01457 187 AVEHLGT-EREETLMVGDNYLTDIRAGID-AGIDTLLVHTG 225 (249)
T ss_pred HHHHcCC-CcccEEEECCCchhhHHHHHH-cCCcEEEEcCC
Confidence 4445555 568999999999999987775 59999999543
No 87
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=88.07 E-value=1.1 Score=41.01 Aligned_cols=43 Identities=9% Similarity=0.017 Sum_probs=39.4
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 118 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 118 np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
+...|+.+-|.+..+|++|++. .++.+.||+.-+|++.++..+
T Consensus 52 ~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~l 94 (156)
T TIGR02250 52 TMWYLTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLI 94 (156)
T ss_pred CeEEEEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHh
Confidence 6678888999999999999855 899999999999999999987
No 88
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=86.63 E-value=1.1 Score=37.81 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
-|.-..+|++||++||+++++||+.-.=....+..+
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 477889999999999999999999854444444444
No 89
>PTZ00445 p36-lilke protein; Provisional
Probab=85.94 E-value=0.82 Score=44.26 Aligned_cols=143 Identities=14% Similarity=0.186 Sum_probs=90.3
Q ss_pred HHHHHhhcchhhHHHHHhCccccccc-CCChHHHHHHHHhcCCeEEEeeCCCchh--hH---------HHHHhhccCCCC
Q 014030 100 AAVDLCHRDGTLKQMVAKDPKTYINE-DRSIVPMLKMLRESGRSTFLVTNSLWDY--TT---------IVMNFLCGSHTL 167 (432)
Q Consensus 100 ~av~~~H~~G~l~~~v~~np~kYi~k-~~~l~~~L~~lr~~GKklFLiTNS~~~y--t~---------~~M~yl~g~~~~ 167 (432)
..+-.+|..|...+. +++..++.. .|++..|+.+|+++|-+|.++|=|+=.- .+ .+.++++-.
T Consensus 52 nTlI~~HsgG~~~~~--~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~--- 126 (219)
T PTZ00445 52 LTMITKHSGGYIDPD--NDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKK--- 126 (219)
T ss_pred hhhhhhhcccccCCC--cchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHh---
Confidence 334446777755554 677888877 5789999999999999999999887533 11 133333331
Q ss_pred CCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCC
Q 014030 168 DGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGS 247 (432)
Q Consensus 168 ~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn 247 (432)
+ .-=|++..|.|-=|.|+.++. -+.++ |..+ |. ...+.|.
T Consensus 127 --------s-~~~~~i~~~~~yyp~~w~~p~--~y~~~----gl~K------Pd----------------p~iK~yH--- 166 (219)
T PTZ00445 127 --------S-KCDFKIKKVYAYYPKFWQEPS--DYRPL----GLDA------PM----------------PLDKSYH--- 166 (219)
T ss_pred --------c-CccceeeeeeeeCCcccCChh--hhhhh----cccC------CC----------------ccchHHH---
Confidence 1 445899999999999999841 22221 1111 10 1122241
Q ss_pred HHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeec
Q 014030 248 VGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 248 ~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
...+++-.|. ...++|+|=|.. ..|..++ ..||.|+.+-.
T Consensus 167 le~ll~~~gl-~peE~LFIDD~~-~NVeaA~-~lGi~ai~f~~ 206 (219)
T PTZ00445 167 LKQVCSDFNV-NPDEILFIDDDM-NNCKNAL-KEGYIALHVTG 206 (219)
T ss_pred HHHHHHHcCC-CHHHeEeecCCH-HHHHHHH-HCCCEEEEcCC
Confidence 1335555565 568999997773 4444444 57999998753
No 90
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=85.90 E-value=0.65 Score=43.12 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 131 PMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 131 ~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
.-++.|++.|.++.++||.+...+..++..+
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~l 85 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTL 85 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHc
Confidence 4678888999999999999999999988875
No 91
>PRK11590 hypothetical protein; Provisional
Probab=85.22 E-value=4.1 Score=38.44 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=33.9
Q ss_pred cccCCChHHHH-HHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 123 INEDRSIVPML-KMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 123 i~k~~~l~~~L-~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
+..-|.....| +.+++.|.++.++|||+-.|+..++.++
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l 133 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDT 133 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHc
Confidence 34468899999 5688899999999999999999999885
No 92
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=84.95 E-value=2.8 Score=42.81 Aligned_cols=38 Identities=5% Similarity=0.091 Sum_probs=33.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 160 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 160 (432)
+...|....+|+.|++.|.++.++||+...|++.++..
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~ 217 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDK 217 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHH
Confidence 44578889999999999999999999999998887775
No 93
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=84.85 E-value=0.95 Score=44.74 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=44.1
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCC
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFF 194 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF 194 (432)
.|....+|++|++.|.+++++||.+..++..++.++-- ...+||.|+....-+.|.
T Consensus 189 ~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~-------------~~~~f~~i~~~~~~~~~~ 244 (300)
T PHA02530 189 NPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQ-------------TDIWFDDLIGRPPDMHFQ 244 (300)
T ss_pred ChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHH-------------cCCchhhhhCCcchhhhc
Confidence 45778999999999999999999999999999999732 123799887766333333
No 94
>PLN02645 phosphoglycolate phosphatase
Probab=84.55 E-value=0.65 Score=46.84 Aligned_cols=37 Identities=35% Similarity=0.506 Sum_probs=29.7
Q ss_pred HHHhcCcCCCcEEEEcccccccccccccccCeeEEEeec
Q 014030 252 HKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 252 ~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
.+.++. +..+++||||.+..||.-++. .||+|++|..
T Consensus 240 ~~~~~~-~~~~~~~VGD~~~~Di~~A~~-aG~~~ilV~~ 276 (311)
T PLN02645 240 ANKFGI-EKSQICMVGDRLDTDILFGQN-GGCKTLLVLS 276 (311)
T ss_pred HHHcCC-CcccEEEEcCCcHHHHHHHHH-cCCCEEEEcC
Confidence 344555 568999999999999988875 5999999943
No 95
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=84.53 E-value=0.54 Score=47.66 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.5
Q ss_pred CcEEEEcccccccccccccccCeeEEEeec
Q 014030 261 SQVLYVGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 261 ~~VLY~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
.++++|||++.+||.-++. .||.|++|-.
T Consensus 264 ~~~~mIGD~~~tDI~ga~~-~G~~silV~t 292 (321)
T TIGR01456 264 HALYMVGDNPASDIIGAQN-YGWFSCLVKT 292 (321)
T ss_pred heEEEEcCChhhhhhhHHh-CCceEEEecc
Confidence 5899999999999997774 6999999953
No 96
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=84.52 E-value=2 Score=46.85 Aligned_cols=36 Identities=25% Similarity=0.157 Sum_probs=31.8
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCc
Q 014030 116 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLW 151 (432)
Q Consensus 116 ~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~ 151 (432)
..+|+.+....|.++..|++|+++|.+++++||..-
T Consensus 189 ~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 189 PKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGG 224 (526)
T ss_pred CCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcc
Confidence 457888777789999999999999999999999766
No 97
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=84.24 E-value=2 Score=39.24 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=46.5
Q ss_pred CcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 014030 118 DPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 186 (432)
Q Consensus 118 np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv 186 (432)
+..-||.+-|.+..+|..|.+. -.+.+.|++.-.|++.++..+ ..++.+|+.++.
T Consensus 36 ~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~l-------------dp~~~~f~~~l~ 90 (162)
T TIGR02251 36 IIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDIL-------------DRGGKVISRRLY 90 (162)
T ss_pred EEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHH-------------CcCCCEEeEEEE
Confidence 5567889999999999999887 899999999999999999987 234567776664
No 98
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=83.58 E-value=13 Score=36.51 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=46.0
Q ss_pred cccCCChHHHHHHH--HhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcc
Q 014030 123 INEDRSIVPMLKML--RESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 196 (432)
Q Consensus 123 i~k~~~l~~~L~~l--r~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~ 196 (432)
|--+|.++.+++.+ ...|-.+.+|++|.--|.+.++..- | =+++|+=|+++ |..|.+
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~-g-------------l~~~f~~I~TN---pa~~~~ 128 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHH-G-------------LRDCFSEIFTN---PACFDA 128 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhC-C-------------CccccceEEeC---CceecC
Confidence 44578999999999 4579999999999999999999863 2 37899988886 456654
No 99
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=82.68 E-value=0.9 Score=43.87 Aligned_cols=38 Identities=34% Similarity=0.515 Sum_probs=28.5
Q ss_pred HHHHHhcCcCCCcE-EEEcccccccccccccccCeeEEEee
Q 014030 250 HLHKLLSIESSSQV-LYVGDHIYGDILRSKKVLGWRTMLVV 289 (432)
Q Consensus 250 ~l~~ll~~~~G~~V-LY~GDhI~~Di~~skk~~gWrT~aII 289 (432)
...+.++. ...++ +||||.+..||.-++ ..||+|++|.
T Consensus 196 ~~~~~~~~-~~~~~~~~IGD~~~~Di~~A~-~~G~~~i~v~ 234 (236)
T TIGR01460 196 AALNLLQA-RPERRDVMVGDNLRTDILGAK-NAGFDTLLVL 234 (236)
T ss_pred HHHHHhCC-CCccceEEECCCcHHHHHHHH-HCCCcEEEEe
Confidence 34445554 34555 999999999998776 5699999984
No 100
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=81.66 E-value=2.9 Score=42.20 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=54.8
Q ss_pred hCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcc
Q 014030 117 KDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 196 (432)
Q Consensus 117 ~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~ 196 (432)
.+-+.=-.++|.+..-|.+||+.|..|.|=+-..-+++...|+-+ + - .++||+||+.+++-+-...
T Consensus 135 td~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~-~-----------L--~~~Fd~ii~~G~~~~~~~~ 200 (297)
T PF05152_consen 135 TDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKEL-K-----------L--EGYFDIIICGGNKAGEYNS 200 (297)
T ss_pred ccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHh-C-----------C--ccccEEEEeCCccCCcCCc
Confidence 333333468899999999999999999999999999999999986 2 1 3899999999998876654
No 101
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=81.61 E-value=2.4 Score=37.97 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=36.1
Q ss_pred cccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 121 TYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 121 kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
+.+...|....+|+.++++|.++.++|+|.-.|+..++..+
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~ 110 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKL 110 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHc
Confidence 33445789999999999999999999999999999998875
No 102
>PRK10444 UMP phosphatase; Provisional
Probab=80.66 E-value=1.2 Score=43.59 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=30.3
Q ss_pred HHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeec
Q 014030 251 LHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 251 l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
..+.++. ...+++||||.+..||.-++ ..|++|++|--
T Consensus 183 ~~~~~~~-~~~~~v~IGD~~~tDi~~A~-~~G~~~vlV~~ 220 (248)
T PRK10444 183 ALNKMQA-HSEETVIVGDNLRTDILAGF-QAGLETILVLS 220 (248)
T ss_pred HHHHcCC-CcccEEEECCCcHHHHHHHH-HcCCCEEEECC
Confidence 3445565 56899999999999988777 55999999953
No 103
>PRK08238 hypothetical protein; Validated
Probab=75.85 E-value=4.5 Score=43.61 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITG 187 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~ 187 (432)
.|....+|++++++|.++.|+|||+-.+++.+++++ | +||.||..
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~l-G----------------lFd~Vigs 118 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHL-G----------------LFDGVFAS 118 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHc-C----------------CCCEEEeC
Confidence 467889999999999999999999999999999985 3 28888876
No 104
>PLN02645 phosphoglycolate phosphatase
Probab=75.02 E-value=4.4 Score=40.81 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=34.2
Q ss_pred cchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 107 RDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 107 ~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
.+|.++.. .. .-|.....|++||++||+++++||.+..-...+.+.+
T Consensus 35 ~DGtl~~~------~~--~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l 81 (311)
T PLN02645 35 CDGVIWKG------DK--LIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF 81 (311)
T ss_pred CcCCeEeC------Cc--cCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence 46877653 11 2367799999999999999999998855555555443
No 105
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=74.07 E-value=3 Score=42.34 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHhcC-CeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCC
Q 014030 126 DRSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKP 191 (432)
Q Consensus 126 ~~~l~~~L~~lr~~G-KklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP 191 (432)
+|.|..+++.+|+.| +++||||||.- ..+..=| +.+|+|.+.=.-|
T Consensus 94 y~~L~elI~~~k~~g~~~tflvTNgsl---pdv~~~L-----------------~~~dql~~sLdA~ 140 (296)
T COG0731 94 YPNLGELIEEIKKRGKKTTFLVTNGSL---PDVLEEL-----------------KLPDQLYVSLDAP 140 (296)
T ss_pred ccCHHHHHHHHHhcCCceEEEEeCCCh---HHHHHHh-----------------ccCCEEEEEeccC
Confidence 578999999999999 79999999987 3333332 2678887765544
No 106
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=72.07 E-value=3.7 Score=37.54 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEeeCC
Q 014030 116 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNS 149 (432)
Q Consensus 116 ~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS 149 (432)
.++|+.++.-.|.++..|++|.+.|.+++++||-
T Consensus 21 ~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 21 PKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp -SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred cCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3578888888889999999999999999999995
No 107
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=66.82 E-value=14 Score=33.94 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=33.7
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
+...|.+..+|..|+++ .++.++||+.-.+++.++..+
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~ 104 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQL 104 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHc
Confidence 44568999999999999 899999999999999988874
No 108
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=65.89 E-value=8.3 Score=37.75 Aligned_cols=36 Identities=19% Similarity=0.109 Sum_probs=28.2
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
-|....+|++||++|++++++||.+..=...+..++
T Consensus 23 ~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l 58 (257)
T TIGR01458 23 VPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL 58 (257)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 567889999999999999999997776444444444
No 109
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=65.38 E-value=6.3 Score=37.71 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHH-----HHHHHHHHHHHhhcc-h----hhHHHHHhCccccc---ccCCChHHH
Q 014030 66 AEAYLFAQLVDFMDNNPGKDSKSTDYVR-----MYKDVRAAVDLCHRD-G----TLKQMVAKDPKTYI---NEDRSIVPM 132 (432)
Q Consensus 66 pe~~L~a~lVd~~d~~~~~~~~~~~y~~-----l~~DV~~av~~~H~~-G----~l~~~v~~np~kYi---~k~~~l~~~ 132 (432)
.|.+-+.-.++.+.+.....+.. .+.. .++.+.......+.. + ...+.......+.. ..-|.+..+
T Consensus 16 se~~~~~a~~~~~~~~g~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pGv~~~ 94 (221)
T COG0637 16 SEPLHARAWLEALKEYGIEISDE-EIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALELEGLKPIPGVVEL 94 (221)
T ss_pred chHHHHHHHHHHHHHcCCCCCHH-HHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhhhcCCCCCccHHHH
Confidence 36667777788887765433210 1111 233433333333321 1 22222222222233 334789999
Q ss_pred HHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEeecCCCcc
Q 014030 133 LKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVEPESGML 212 (432)
Q Consensus 133 L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~~~tg~l 212 (432)
|+.|++.|.++-+.|||+-.-+..+++-+-. .+|||.+|+.+.=+ . ..|
T Consensus 95 l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl--------------~~~f~~~v~~~dv~----~--~KP----------- 143 (221)
T COG0637 95 LEQLKARGIPLAVASSSPRRAAERVLARLGL--------------LDYFDVIVTADDVA----R--GKP----------- 143 (221)
T ss_pred HHHHHhcCCcEEEecCChHHHHHHHHHHccC--------------hhhcchhccHHHHh----c--CCC-----------
Confidence 9999999999999999998777777765422 67999988765422 0 001
Q ss_pred ccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCCCcEEEEcccccccccccccccCeeEEEeec
Q 014030 213 LNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 213 ~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
..-+|.. -.+.||. ...+++.|.|...| +.+-+..|-+++.|..
T Consensus 144 --------------------------~Pd~yL~-----Aa~~Lgv-~P~~CvviEDs~~G--i~Aa~aAGm~vv~v~~ 187 (221)
T COG0637 144 --------------------------APDIYLL-----AAERLGV-DPEECVVVEDSPAG--IQAAKAAGMRVVGVPA 187 (221)
T ss_pred --------------------------CCHHHHH-----HHHHcCC-ChHHeEEEecchhH--HHHHHHCCCEEEEecC
Confidence 1113321 2455666 68899999999988 5566677989988875
No 110
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=63.38 E-value=11 Score=36.61 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCC
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSL 150 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~ 150 (432)
|.....|++|+++|++++++||..
T Consensus 20 ~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 20 PEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 567899999999999999999833
No 111
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=63.07 E-value=56 Score=32.93 Aligned_cols=39 Identities=8% Similarity=0.116 Sum_probs=35.5
Q ss_pred cccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 123 INEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 123 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
+...|....+|..|+++|-++.++|++.-+++..++.-+
T Consensus 120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~l 158 (277)
T TIGR01544 120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQA 158 (277)
T ss_pred CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHc
Confidence 556899999999999999999999999999999998874
No 112
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=60.17 E-value=11 Score=34.28 Aligned_cols=37 Identities=8% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 162 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 162 (432)
.|....++++++++|.+++++|.+++.-.+....|+-
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~ 65 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLS 65 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHH
Confidence 4778899999999999999999999999887777773
No 113
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=58.46 E-value=61 Score=35.05 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=47.8
Q ss_pred ecccHHHHHHH-HHhHHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Q 014030 289 VPELEREVELL-WELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRE 367 (432)
Q Consensus 289 I~ELe~Ei~~~-~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~ 367 (432)
+.|++.|++.+ .+.+.+.++-.+|++.+..|+.+++.-= +.+++++....++++.++++++..+.++.+.
T Consensus 68 ~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av---------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 68 VKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV---------QSETQELTKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777644 3445566677777766666666554210 1223345567778888888888888888777
Q ss_pred Hhhhcc
Q 014030 368 CHQKFH 373 (432)
Q Consensus 368 ~~~~fn 373 (432)
+....+
T Consensus 139 l~~~~~ 144 (472)
T TIGR03752 139 LAGVLT 144 (472)
T ss_pred Hhhccc
Confidence 654443
No 114
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=57.77 E-value=10 Score=34.10 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=31.2
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 160 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 160 (432)
|+...+|+.++++|.+++++|.|+-.++..++..
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~ 125 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAER 125 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHH
Confidence 6677999999999999999999999999999884
No 115
>PRK10444 UMP phosphatase; Provisional
Probab=57.11 E-value=15 Score=36.04 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
-|....+|++|+++||+++++||....=.....+.+
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l 54 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF 54 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH
Confidence 578889999999999999999999986555555555
No 116
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=56.73 E-value=16 Score=34.68 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=33.5
Q ss_pred ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 124 NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 124 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
...|....+|+.+|+.| ++.++||+.-.++..++..+
T Consensus 68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~l 104 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQL 104 (203)
T ss_pred CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHc
Confidence 44789999999999987 99999999999999999875
No 117
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=55.61 E-value=32 Score=32.82 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=38.2
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCc
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFH 195 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~ 195 (432)
+.+..+|+.+|++|+|.-|.=|-....-. + ..|-+..|.|.+.+-.|+|=.
T Consensus 92 ~~~~~~i~~ik~~g~k~GialnP~T~~~~-----~-------------~~~l~~vD~VlvMsV~PG~~G 142 (201)
T PF00834_consen 92 EDPKETIKYIKEAGIKAGIALNPETPVEE-----L-------------EPYLDQVDMVLVMSVEPGFGG 142 (201)
T ss_dssp TTHHHHHHHHHHTTSEEEEEE-TTS-GGG-----G-------------TTTGCCSSEEEEESS-TTTSS
T ss_pred hCHHHHHHHHHHhCCCEEEEEECCCCchH-----H-------------HHHhhhcCEEEEEEecCCCCc
Confidence 46778999999999999998776643321 1 467788999999999999754
No 118
>PRK10884 SH3 domain-containing protein; Provisional
Probab=53.84 E-value=77 Score=30.52 Aligned_cols=75 Identities=19% Similarity=0.258 Sum_probs=33.6
Q ss_pred EeecccHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHH
Q 014030 287 LVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQR 366 (432)
Q Consensus 287 aII~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~ 366 (432)
..+|+|+.|++.....- ...-..+.+...++++.+...+.... .. .++-+.+.+.++.++++.+.++....++.+
T Consensus 93 ~rlp~le~el~~l~~~l--~~~~~~~~~~~~~l~~~~~~~~~~~~--~L-~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 93 TRVPDLENQVKTLTDKL--NNIDNTWNQRTAEMQQKVAQSDSVIN--GL-KEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999998775322 11112222333333332222111100 00 011123455666666666666665555543
No 119
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=51.55 E-value=18 Score=35.44 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=29.3
Q ss_pred ChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhcc
Q 014030 128 SIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 163 (432)
Q Consensus 128 ~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 163 (432)
....+++.+++.|-++|++||-+-..-+.++..|..
T Consensus 124 ~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~ 159 (229)
T TIGR01675 124 EGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN 159 (229)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH
Confidence 344678888999999999999998887777777753
No 120
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=51.53 E-value=20 Score=34.04 Aligned_cols=38 Identities=18% Similarity=0.085 Sum_probs=33.0
Q ss_pred ccCCChHHHHH-HHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 124 NEDRSIVPMLK-MLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 124 ~k~~~l~~~L~-~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
..-|.....|+ .++++|.++.++|||+-.|+..++.+.
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~ 132 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDS 132 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhc
Confidence 34688999995 788899999999999999999999774
No 121
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.49 E-value=1.2e+02 Score=29.86 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHHhhhHHHHHH
Q 014030 343 MCTRMDDLEYQRDKARLSHQEAQRE 367 (432)
Q Consensus 343 ~~~~l~~l~~~~~~lr~~~~~~~~~ 367 (432)
....+..+..+...+++.+.++.++
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555544
No 122
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=49.39 E-value=42 Score=33.50 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
-|....+|+.|+++|.++|++||.+-...+.+...+
T Consensus 120 ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L 155 (266)
T TIGR01533 120 VAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL 155 (266)
T ss_pred CccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH
Confidence 477889999999999999999999876666665554
No 123
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=49.19 E-value=23 Score=34.50 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=81.7
Q ss_pred hhHHHHHhCcccccccC---CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEE
Q 014030 110 TLKQMVAKDPKTYINED---RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVIT 186 (432)
Q Consensus 110 ~l~~~v~~np~kYi~k~---~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv 186 (432)
.+..+..+++.+++... |.+..+++.|+++|-++=|+|||+......-.++. +++.+.|+.+|.
T Consensus 75 e~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~-------------~~~~~~f~~~v~ 141 (222)
T KOG2914|consen 75 EFNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRH-------------EDIFKNFSHVVL 141 (222)
T ss_pred HHHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHh-------------hHHHHhcCCCee
Confidence 44455555555555553 57889999999999999999999988888777776 678999999998
Q ss_pred ccCCCCCCccCCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCHHHHHHHhcCcCC-CcEEE
Q 014030 187 GSAKPGFFHEDNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSVGHLHKLLSIESS-SQVLY 265 (432)
Q Consensus 187 ~A~KP~FF~~~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~~~l~~ll~~~~G-~~VLY 265 (432)
+.-|..=.. .| ...+|. .-.+.+|. .. .++|-
T Consensus 142 -~d~~~v~~g---KP-------------------------------------~Pdi~l-----~A~~~l~~-~~~~k~lV 174 (222)
T KOG2914|consen 142 -GDDPEVKNG---KP-------------------------------------DPDIYL-----KAAKRLGV-PPPSKCLV 174 (222)
T ss_pred -cCCccccCC---CC-------------------------------------CchHHH-----HHHHhcCC-CCccceEE
Confidence 554433221 01 011221 12345555 34 78999
Q ss_pred EcccccccccccccccCeeEEEeec
Q 014030 266 VGDHIYGDILRSKKVLGWRTMLVVP 290 (432)
Q Consensus 266 ~GDhI~~Di~~skk~~gWrT~aII~ 290 (432)
|.|.+-| +.+-+..||..++|-.
T Consensus 175 feds~~G--v~aa~aagm~vi~v~~ 197 (222)
T KOG2914|consen 175 FEDSPVG--VQAAKAAGMQVVGVAT 197 (222)
T ss_pred ECCCHHH--HHHHHhcCCeEEEecC
Confidence 9998887 4555678999998754
No 124
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=48.24 E-value=30 Score=30.76 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=34.6
Q ss_pred ccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhc
Q 014030 120 KTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLC 162 (432)
Q Consensus 120 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~ 162 (432)
..+|.+-|.+..+|+.+.+. ..+++.|.+.-.|++.++..+.
T Consensus 32 ~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 32 GYYVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHT
T ss_pred ceeEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhh
Confidence 56777889999999999555 8999999999999999999984
No 125
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=47.36 E-value=28 Score=33.32 Aligned_cols=98 Identities=13% Similarity=0.240 Sum_probs=59.4
Q ss_pred ccchHHHHHHHHHHHHHhcCCCCCCC--------CCChHHHHHHHHHHHHHhhcchhhHHHHHhCcccccccCCChHHHH
Q 014030 62 LFSLAEAYLFAQLVDFMDNNPGKDSK--------STDYVRMYKDVRAAVDLCHRDGTLKQMVAKDPKTYINEDRSIVPML 133 (432)
Q Consensus 62 lFslpe~~L~a~lVd~~d~~~~~~~~--------~~~y~~l~~DV~~av~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L 133 (432)
.|++=.+.+....+|++......... ...+..+-...+..+.. ..|.=...+.+--+.|+.--|....++
T Consensus 9 vFD~D~TLi~~~~~~~~~~~~g~~~~v~~~t~~~~~~~~~~~~~~~~~v~~--l~g~~~~~v~~~~~~~~~l~~ga~elv 86 (212)
T COG0560 9 VFDLDGTLINAELIDELARGAGVGEEVLAITERAMRGELDFEESLRLRVAL--LKGLPVEVLEEVREEFLRLTPGAEELV 86 (212)
T ss_pred EEecccchhhHHHHHHHHHHhCCHHHHHHHHHHHhcccccHHHHHHHHHHH--hCCCCHHHHHHHHHhcCcCCccHHHHH
Confidence 56666666666777776544321000 00111111222222222 234444444444444455578899999
Q ss_pred HHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 134 KMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 134 ~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
..+|++|-++++||.|.-.|++.++..+
T Consensus 87 ~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 87 AALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred HHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 9999999999999999999999999985
No 126
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=46.52 E-value=28 Score=35.99 Aligned_cols=62 Identities=19% Similarity=0.327 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHhcC-CeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEcc
Q 014030 126 DRSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGS 188 (432)
Q Consensus 126 ~~~l~~~L~~lr~~G-KklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A 188 (432)
-|.+..|++.|-+.| .-+|-++||+|.+-...-.|+.-..+.++|. -..+|-..||.|++.+
T Consensus 198 ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl-~L~~~g~~~~~i~~sg 260 (373)
T COG4850 198 IPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPL-LLRRWGGVLDNIIESG 260 (373)
T ss_pred CCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCch-hHhhcCCcccccccch
Confidence 368889999998888 8999999999999999999987654433221 2245655666665543
No 127
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=45.99 E-value=19 Score=36.75 Aligned_cols=59 Identities=27% Similarity=0.380 Sum_probs=41.7
Q ss_pred CceecCCCHHHHHHHhcCc---CCCcEEEEcccccccccccccccCeeEEEeecccHHHHHHH
Q 014030 240 CRIFQGGSVGHLHKLLSIE---SSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELL 299 (432)
Q Consensus 240 g~vY~gGn~~~l~~ll~~~---~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe~Ei~~~ 299 (432)
.-++.|=-...+.+++... ..++.|.|||-+=+||+-.+ .+|..|.+|.-=...|-.+.
T Consensus 218 ~P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~-~~G~~TLLvltGv~~led~~ 279 (306)
T KOG2882|consen 218 QPIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGK-NCGFKTLLVLSGVTTLEDIL 279 (306)
T ss_pred CCeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhh-ccCcceEEEecCcCcHHHHH
Confidence 3356665555565555431 35899999999999999887 66999999976655544443
No 128
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=45.94 E-value=2.6e+02 Score=27.01 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=50.4
Q ss_pred HHhhcchhhHHHHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhcc
Q 014030 103 DLCHRDGTLKQMVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 163 (432)
Q Consensus 103 ~~~H~~G~l~~~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 163 (432)
+.+|. ++ +++.+...+=|.=||..+++.+-.++++-.+.+++..-=.|+..+.+-++|
T Consensus 55 ~~i~~--s~-~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivg 112 (220)
T COG4359 55 GSIHS--SL-EEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVG 112 (220)
T ss_pred HhcCC--CH-HHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcc
Confidence 34553 34 888888888888899999999999999999999998888999999999988
No 129
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=43.82 E-value=47 Score=29.46 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=46.7
Q ss_pred cchhhHHHHHhCccccc--ccCCChHHHHHHHHhcCCeEEEeeCCCchhhH------------HHHHhhccCCCCCCCCC
Q 014030 107 RDGTLKQMVAKDPKTYI--NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTT------------IVMNFLCGSHTLDGGIT 172 (432)
Q Consensus 107 ~~G~l~~~v~~np~kYi--~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~------------~~M~yl~g~~~~~~~~~ 172 (432)
.||++- ..+.+.|. ...+.....|++|+++|-+++++|.-+..... .+..++
T Consensus 8 iDGTL~---~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL----------- 73 (126)
T TIGR01689 8 LDNTIT---LTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWL----------- 73 (126)
T ss_pred CCCCcc---cCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHH-----------
Confidence 356662 23344564 34567778899999999999999999998876 777777
Q ss_pred CCCCCccCccEEEEcc
Q 014030 173 CNSDWLLYFDVVITGS 188 (432)
Q Consensus 173 ~~~dWrdlFDvVIv~A 188 (432)
..|.=-||=|++.+
T Consensus 74 --~k~~ipYd~l~~~k 87 (126)
T TIGR01689 74 --NQHNVPYDEIYVGK 87 (126)
T ss_pred --HHcCCCCceEEeCC
Confidence 33444567777754
No 130
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=39.52 E-value=30 Score=34.04 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCC
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSL 150 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~ 150 (432)
-|....+|++|+++|+++.++||+.
T Consensus 20 ~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 20 VPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 3568899999999999999999854
No 131
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.28 E-value=24 Score=34.12 Aligned_cols=107 Identities=17% Similarity=0.334 Sum_probs=64.1
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEe
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQV 205 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v 205 (432)
++.+..+|+.+|+.|+|.-|.-|-.-..... .++ -++-|.|.+.+--|+|-.. .|...
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i--~~~----------------l~~~D~vlvMtV~PGfgGq----~fi~~ 149 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPATPLHHL--EYI----------------MDKVDLILLMSVNPGFGGQ----SFIPH 149 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCCHHHH--HHH----------------HHhCCeEEEEEecCCCCCc----eecHh
Confidence 3457799999999999999999987644322 233 3467999999999999753 33332
Q ss_pred ecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCC--CHHHHHHHhcCcCCCcEEEEcccccc
Q 014030 206 EPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGG--SVGHLHKLLSIESSSQVLYVGDHIYG 272 (432)
Q Consensus 206 ~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gG--n~~~l~~ll~~~~G~~VLY~GDhI~~ 272 (432)
..+ +++ .+.. +..... -.-.|...| |.+.+.++.. .|.+++-+|=-||+
T Consensus 150 ~le--kI~---------~l~~----~~~~~~-~~~~I~vdGGI~~eni~~l~~--aGAd~vVvGSaIf~ 200 (220)
T PRK08883 150 TLD--KLR---------AVRK----MIDESG-RDIRLEIDGGVKVDNIREIAE--AGADMFVAGSAIFG 200 (220)
T ss_pred HHH--HHH---------HHHH----HHHhcC-CCeeEEEECCCCHHHHHHHHH--cCCCEEEEeHHHhC
Confidence 211 111 0000 000000 012244455 4456666666 49999999966664
No 132
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=39.15 E-value=2.1e+02 Score=27.08 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHh
Q 014030 333 EGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECH 369 (432)
Q Consensus 333 ~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~ 369 (432)
.+..++++ .+.++|+..|+.+|..+.++.-.+.
T Consensus 137 ~hMSeeER----~EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 137 RHMSEEER----EEAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred hcCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445554 3557788888999998888765554
No 133
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=38.70 E-value=2.3e+02 Score=27.84 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=10.6
Q ss_pred HhHHHHHHHHHHHHHHhhhHHH
Q 014030 343 MCTRMDDLEYQRDKARLSHQEA 364 (432)
Q Consensus 343 ~~~~l~~l~~~~~~lr~~~~~~ 364 (432)
++..+.+...++.+.++.+..+
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555544444443
No 134
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=38.48 E-value=30 Score=37.63 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=32.7
Q ss_pred CChHHHHHHHHhcCC-eEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESGR-STFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~GK-klFLiTNS~~~yt~~~M~yl 161 (432)
|.....|++|++.|. ++.++||.+...+..++..+
T Consensus 365 ~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~l 400 (536)
T TIGR01512 365 PDAAEAIAELKALGIEKVVMLTGDRRAVAERVAREL 400 (536)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHc
Confidence 677899999999999 99999999999999999985
No 135
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=38.45 E-value=35 Score=32.91 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.5
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
|.....|+++++.|.+++|+|..++..+..++..+
T Consensus 23 ~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l 57 (264)
T COG0561 23 PETKEALARLREKGVKVVLATGRPLPDVLSILEEL 57 (264)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHc
Confidence 46778999999999999999999998888888876
No 136
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.53 E-value=2.4e+02 Score=24.92 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=26.2
Q ss_pred eeEEEeecccHHHHHHHHHh-HHHHHHHHHHHhhHHHHHHHHHhhh
Q 014030 283 WRTMLVVPELEREVELLWEL-RDLRKKLHLLRNERDLIEDQIHHLK 327 (432)
Q Consensus 283 WrT~aII~ELe~Ei~~~~~~-~~~~~~l~~L~~~~~~l~~~~~~l~ 327 (432)
=-++.+|+-|..+|+-.... ..++.++..|...|+.+.+.+-.+.
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~ 57 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM 57 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665555443322 1355677888887777777665544
No 137
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=37.53 E-value=35 Score=37.30 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=32.6
Q ss_pred CChHHHHHHHHhcC-CeEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESG-RSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~G-KklFLiTNS~~~yt~~~M~yl 161 (432)
|.....|++|+++| .++.++||.+-..+..+++.+
T Consensus 387 ~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~l 422 (556)
T TIGR01525 387 PEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAEL 422 (556)
T ss_pred HhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHh
Confidence 57789999999999 999999999999999999985
No 138
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=37.52 E-value=47 Score=31.91 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=26.6
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
|....+|..|+++|++++++||+.-.=......++
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l 51 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKL 51 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 56789999999999999999988754444444444
No 139
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=37.49 E-value=94 Score=33.81 Aligned_cols=113 Identities=13% Similarity=0.274 Sum_probs=66.9
Q ss_pred Cccccc-ccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCcc
Q 014030 118 DPKTYI-NEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHE 196 (432)
Q Consensus 118 np~kYi-~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~ 196 (432)
+.||=| .|+.+-..+.+...++||+|.||+. -.+...+..=++- +.-|.|.+
T Consensus 92 ~tEKevLypn~~~~eL~e~ai~n~krVIlISD--MYlps~Il~~~L~------------------------s~g~d~~n- 144 (635)
T COG5610 92 NTEKEVLYPNKKNIELVEEAIKNEKRVILISD--MYLPSSILRTFLN------------------------SFGPDFNN- 144 (635)
T ss_pred ccceeEeeccccchHHHHHHHhCCCeEEEEec--ccCcHHHHHHHHH------------------------hcCCCccC-
Confidence 445544 5566777899999999999999964 4444555554443 22344443
Q ss_pred CCCCCceEeecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCCCH-HHHHHHhcCcCCCcEEEEccccccccc
Q 014030 197 DNRANLFQVEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGGSV-GHLHKLLSIESSSQVLYVGDHIYGDIL 275 (432)
Q Consensus 197 ~~~~~~~~v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gGn~-~~l~~ll~~~~G~~VLY~GDhI~~Di~ 275 (432)
.|++--. ..+ +.+. .||. ..+.++=+. ...+.+-+||+..+|++
T Consensus 145 ---ipiY~S~----e~r-----------------------l~Kn----Sg~LFk~Vlk~EnV-d~~~w~H~GDN~~aD~l 189 (635)
T COG5610 145 ---IPIYMSS----EFR-----------------------LKKN----SGNLFKAVLKLENV-DPKKWIHCGDNWVADYL 189 (635)
T ss_pred ---ceeeecc----eee-----------------------hhcc----cchHHHHHHhhcCC-ChhheEEecCchhhhhc
Confidence 3544311 110 0111 2221 223444444 57899999999999999
Q ss_pred ccccccCeeEEEeecccH
Q 014030 276 RSKKVLGWRTMLVVPELE 293 (432)
Q Consensus 276 ~skk~~gWrT~aII~ELe 293 (432)
.||+. |--|..-+-||-
T Consensus 190 ~pk~L-gI~Tlf~~s~l~ 206 (635)
T COG5610 190 KPKNL-GISTLFYISQLL 206 (635)
T ss_pred Ccccc-chhHHHHHHHhh
Confidence 99864 655544455554
No 140
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=36.25 E-value=64 Score=32.91 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=23.9
Q ss_pred HHHhhhHHHHHHHhhhcccccccccccCCccchhhhhhhcccc
Q 014030 356 KARLSHQEAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFAC 398 (432)
Q Consensus 356 ~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~~S~Fa~qv~ryAd 398 (432)
.+++.++.|.++.-..=-..||..+.+-......++.+..-++
T Consensus 245 ~V~~iv~~m~~~a~~agqSSwGPtvY~i~d~~~~~~~~~~~~~ 287 (312)
T COG1907 245 DVKEIVDEMVEAAYGAGQSSWGPTVYGIVDSREAGSVVRKLID 287 (312)
T ss_pred HHHHHHHHHHHhcccccccccCCEEEEeccccccchHHHHHHH
Confidence 3444454444331112235799999987776666665544444
No 141
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=35.96 E-value=11 Score=33.92 Aligned_cols=38 Identities=18% Similarity=0.445 Sum_probs=27.2
Q ss_pred HHHhCcccccccC--CChHHHHHHHHhcCCeEEEeeCCCc
Q 014030 114 MVAKDPKTYINED--RSIVPMLKMLRESGRSTFLVTNSLW 151 (432)
Q Consensus 114 ~v~~np~kYi~k~--~~l~~~L~~lr~~GKklFLiTNS~~ 151 (432)
-+.++||-++|+. ..+..+|..+.+.|.++|+.|-|++
T Consensus 261 lliDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 261 LLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp EEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred EEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 3467888888885 4566666666555789999999975
No 142
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=34.90 E-value=41 Score=30.94 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=31.4
Q ss_pred cCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh
Q 014030 125 EDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 160 (432)
Q Consensus 125 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 160 (432)
.+|.+..+|++|++.|.++.++|+.++..+...+..
T Consensus 18 ~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 18 LSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 356788999999999999999999999888877764
No 143
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=34.69 E-value=1.5e+02 Score=29.29 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=41.1
Q ss_pred HhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhcc
Q 014030 116 AKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 163 (432)
Q Consensus 116 ~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 163 (432)
.....++..-+++++.+++.|.+.|..|+-+|...-.+.+..+.+|-.
T Consensus 73 i~~~~~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~ 120 (252)
T PF11019_consen 73 IFELRKMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKS 120 (252)
T ss_pred HHhhcceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHH
Confidence 344455556678999999999999999999999999999999999864
No 144
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=33.75 E-value=40 Score=28.59 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLW 151 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~ 151 (432)
.+++..+++.+|++|.++..||+.+-
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36788999999999999999999765
No 145
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=33.34 E-value=61 Score=31.46 Aligned_cols=106 Identities=17% Similarity=0.252 Sum_probs=64.0
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEee
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE 206 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~ 206 (432)
+.+..+|+.+|++|.|.-|.-|-.-+- +.+-.|+ ++.|.|.+.+--|+|-.. .|.+-.
T Consensus 97 ~~~~~~l~~Ir~~g~k~GlalnP~T~~-~~i~~~l-----------------~~vD~VlvMtV~PGf~GQ----~fi~~~ 154 (223)
T PRK08745 97 RHVHRTIQLIKSHGCQAGLVLNPATPV-DILDWVL-----------------PELDLVLVMSVNPGFGGQ----AFIPSA 154 (223)
T ss_pred ccHHHHHHHHHHCCCceeEEeCCCCCH-HHHHHHH-----------------hhcCEEEEEEECCCCCCc----cccHHH
Confidence 457789999999999999998876433 2333333 468999999999999864 232211
Q ss_pred cCCCccccCCCCCCCCccCCCCccccccccCCCCceecCC--CHHHHHHHhcCcCCCcEEEEcccccc
Q 014030 207 PESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGG--SVGHLHKLLSIESSSQVLYVGDHIYG 272 (432)
Q Consensus 207 ~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gG--n~~~l~~ll~~~~G~~VLY~GDhI~~ 272 (432)
.+ ++..+ ..+..... -.-.|..-| |.+.+.++.. .|.+++-+|=-||+
T Consensus 155 l~--------------KI~~l-~~~~~~~~-~~~~IeVDGGI~~eti~~l~~--aGaDi~V~GSaiF~ 204 (223)
T PRK08745 155 LD--------------KLRAI-RKKIDALG-KPIRLEIDGGVKADNIGAIAA--AGADTFVAGSAIFN 204 (223)
T ss_pred HH--------------HHHHH-HHHHHhcC-CCeeEEEECCCCHHHHHHHHH--cCCCEEEEChhhhC
Confidence 00 01000 00000000 012355555 4566666666 49999999977764
No 146
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.13 E-value=2.6e+02 Score=28.44 Aligned_cols=9 Identities=33% Similarity=0.759 Sum_probs=4.4
Q ss_pred HHHHHHhhh
Q 014030 319 IEDQIHHLK 327 (432)
Q Consensus 319 l~~~~~~l~ 327 (432)
||+.+++..
T Consensus 106 IEEECHRVE 114 (305)
T PF15290_consen 106 IEEECHRVE 114 (305)
T ss_pred HHHHHHHHH
Confidence 555555443
No 147
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=32.40 E-value=34 Score=31.89 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=34.3
Q ss_pred CCCHHHHHHHhcC---cCCCcEEEEcccccccccccccccCeeEEEeecccH
Q 014030 245 GGSVGHLHKLLSI---ESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELE 293 (432)
Q Consensus 245 gGn~~~l~~ll~~---~~G~~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe 293 (432)
+|....+..+.+- ++.++++.|||-+|.||+-+... |--++.+-|=..
T Consensus 121 ~ct~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~m-Gs~gVw~~~gv~ 171 (190)
T KOG2961|consen 121 ACTAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRM-GSLGVWTEPGVR 171 (190)
T ss_pred CccHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhc-cceeEEeccccc
Confidence 4666667777773 25699999999999999988765 544565544443
No 148
>PF15342 FAM212: FAM212 family
Probab=31.84 E-value=20 Score=27.84 Aligned_cols=23 Identities=30% Similarity=0.600 Sum_probs=17.9
Q ss_pred HhcCcCCCcEEEEcccccccccc
Q 014030 254 LLSIESSSQVLYVGDHIYGDILR 276 (432)
Q Consensus 254 ll~~~~G~~VLY~GDhI~~Di~~ 276 (432)
|+...+..+=|..||++|.|++.
T Consensus 31 LmSr~RnRQPLVLGDN~FADLV~ 53 (62)
T PF15342_consen 31 LMSRGRNRQPLVLGDNVFADLVG 53 (62)
T ss_pred HHhccccCCCeeecccHHHHHHH
Confidence 44444678899999999999864
No 149
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=31.77 E-value=3.4e+02 Score=25.85 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=13.0
Q ss_pred HhHHHHHHHHHHHHHHhhhHHH
Q 014030 343 MCTRMDDLEYQRDKARLSHQEA 364 (432)
Q Consensus 343 ~~~~l~~l~~~~~~lr~~~~~~ 364 (432)
..+.+.++.++|++|...-..+
T Consensus 112 L~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 112 LEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777666544433
No 150
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=31.00 E-value=1.2e+02 Score=33.81 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=47.3
Q ss_pred cEEEEcccccccccccccccCeeEEEeecccHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHH
Q 014030 262 QVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQR 341 (432)
Q Consensus 262 ~VLY~GDhI~~Di~~skk~~gWrT~aII~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 341 (432)
+.+=-|=|++++...+ ..|.-.+-||.|+-+ |.+ ....+|.+|+..+.+|...+..++..+ +
T Consensus 56 dA~~~~~~~~~p~~~s--~~~~s~~r~~~e~~R---I~~---sVs~EL~ele~krqel~seI~~~n~ki----------E 117 (907)
T KOG2264|consen 56 DALKQNIENLDPYDAS--CSGYSIGRILREQKR---ILA---SVSLELTELEVKRQELNSEIEEINTKI----------E 117 (907)
T ss_pred ccchhcccccCccccc--ccchhHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHhHHHHHHHHH----------H
Confidence 3444556777776665 334444455555543 222 234577777777666655554433221 1
Q ss_pred HHhHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 014030 342 KMCTRMDDLEYQRDKARLSHQEAQRECHQ 370 (432)
Q Consensus 342 ~~~~~l~~l~~~~~~lr~~~~~~~~~~~~ 370 (432)
++.+.+.+-+.+..+|+..+.++++++++
T Consensus 118 elk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 118 ELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 23444445555555555555555554444
No 151
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=30.44 E-value=67 Score=32.40 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=32.9
Q ss_pred ccccc--CCChH---HHHHHHHhcCCeEEEeeCCCchhhHHHHHhhcc
Q 014030 121 TYINE--DRSIV---PMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 163 (432)
Q Consensus 121 kYi~k--~~~l~---~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 163 (432)
+++.+ .|.++ .+++.+++.|-++|+|||-+=..-+..+..|.-
T Consensus 137 ~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~k 184 (275)
T TIGR01680 137 EFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKK 184 (275)
T ss_pred HHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHH
Confidence 44443 35555 577788899999999999998888888888853
No 152
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=30.21 E-value=53 Score=30.63 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.9
Q ss_pred hHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 129 IVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 129 l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
...+|++|+++|.++.++||-+...+..+...+
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l 53 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKAL 53 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 678999999999999999999999988888765
No 153
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=30.13 E-value=49 Score=36.29 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=32.4
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
|..+.+|++||+.|.++.++||.+-.+++.+++.+
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~l 442 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKEL 442 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHc
Confidence 56778999999999999999999999999999985
No 154
>PF09802 Sec66: Preprotein translocase subunit Sec66; InterPro: IPR018624 Members of this family of proteins are a component of the heterotetrameric Sec62/63 complex composed of SEC62, SEC63, SEC66 and SEC72. The Sec62/63 complex associates with the Sec61 complex to form the Sec complex. Sec 66 is involved in SRP-independent post-translational translocation across the endoplasmic reticulum and functions together with the Sec61 complex and KAR2 in a channel-forming translocon complex. Furthermore, Sec66 is also required for growth at elevated temperatures [, , , ].
Probab=29.76 E-value=3.4e+02 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=14.4
Q ss_pred HHHhhhHHHHHHHhhhcccccccccc
Q 014030 356 KARLSHQEAQRECHQKFHKVWGQLMK 381 (432)
Q Consensus 356 ~lr~~~~~~~~~~~~~fn~~~GSlFR 381 (432)
++...+++...+. +.|-|.||+.|-
T Consensus 122 e~E~El~eVv~EA-n~l~pgWgq~IF 146 (190)
T PF09802_consen 122 EMEEELKEVVQEA-NALKPGWGQTIF 146 (190)
T ss_pred HHHHHHHHHHHHH-HhcccCccHHHH
Confidence 3334444444443 467899999654
No 155
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=29.00 E-value=53 Score=31.06 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=24.1
Q ss_pred cccc------CCChHHHHHHHHhcCCeEEEeeC
Q 014030 122 YINE------DRSIVPMLKMLRESGRSTFLVTN 148 (432)
Q Consensus 122 Yi~k------~~~l~~~L~~lr~~GKklFLiTN 148 (432)
||++ .|.+.+.|..|++.|-++.++||
T Consensus 23 yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvTN 55 (181)
T COG0241 23 YVDSLDDFQFIPGVIPALLKLQRAGYKLVVVTN 55 (181)
T ss_pred ccCcHHHhccCccHHHHHHHHHhCCCeEEEEEC
Confidence 6665 57888999999999999999999
No 156
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.87 E-value=15 Score=32.55 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=9.0
Q ss_pred CCCCCCccCccE
Q 014030 172 TCNSDWLLYFDV 183 (432)
Q Consensus 172 ~~~~dWrdlFDv 183 (432)
.+---||||||+
T Consensus 108 ~rI~~WRDYFDv 119 (130)
T COG4308 108 GRIVLWRDYFDV 119 (130)
T ss_pred CEEEeehhhhhH
Confidence 344569999996
No 157
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=27.70 E-value=92 Score=30.49 Aligned_cols=106 Identities=11% Similarity=0.045 Sum_probs=63.4
Q ss_pred CChHHHHHHHHhcCC--eEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceE
Q 014030 127 RSIVPMLKMLRESGR--STFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQ 204 (432)
Q Consensus 127 ~~l~~~L~~lr~~GK--klFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~ 204 (432)
+.+...|+.+|+.|+ |.-|.=|-.-+. +.+-.|+ ++-|.|.+.+--|+|-.. .|..
T Consensus 103 ~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~-~~i~~~l-----------------~~vD~VLiMtV~PGfgGQ----~f~~ 160 (228)
T PRK08091 103 HDLALTIEWLAKQKTTVLIGLCLCPETPI-SLLEPYL-----------------DQIDLIQILTLDPRTGTK----APSD 160 (228)
T ss_pred ccHHHHHHHHHHCCCCceEEEEECCCCCH-HHHHHHH-----------------hhcCEEEEEEECCCCCCc----cccH
Confidence 457789999999999 999888866443 3333343 357999999999999864 2321
Q ss_pred eecCCCccccCCCCCCCCccCCCCccccccccCCCCceecCC--CHHHHHHHhcCcCCCcEEEEcccccc
Q 014030 205 VEPESGMLLNTDNGTPMPQVGDISPGLLLKEKNGTCRIFQGG--SVGHLHKLLSIESSSQVLYVGDHIYG 272 (432)
Q Consensus 205 v~~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~~~g~vY~gG--n~~~l~~ll~~~~G~~VLY~GDhI~~ 272 (432)
-. + .++..+ ..+..... -.-.|..-| |...+.++..+ |.+++-.|=-||+
T Consensus 161 ~~-----l---------~KI~~l-r~~~~~~~-~~~~IeVDGGI~~~ti~~l~~a--GaD~~V~GSalF~ 212 (228)
T PRK08091 161 LI-----L---------DRVIQV-ENRLGNRR-VEKLISIDGSMTLELASYLKQH--QIDWVVSGSALFS 212 (228)
T ss_pred HH-----H---------HHHHHH-HHHHHhcC-CCceEEEECCCCHHHHHHHHHC--CCCEEEEChhhhC
Confidence 10 0 011100 00000000 012255555 55666777664 9999999977775
No 158
>PRK08005 epimerase; Validated
Probab=27.26 E-value=97 Score=29.87 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=61.8
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCccCCCCCceEee
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFHEDNRANLFQVE 206 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~~~~~~~~~~v~ 206 (432)
+.+...|+.+|++|+|.=|.=|-.-+- +.+ .++-++-|.|.+.+--|+|-.. .|..-.
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~-~~i-----------------~~~l~~vD~VlvMsV~PGf~GQ----~f~~~~ 150 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPL-LPY-----------------RYLALQLDALMIMTSEPDGRGQ----QFIAAM 150 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCH-HHH-----------------HHHHHhcCEEEEEEecCCCccc----eecHHH
Confidence 457789999999999999988865322 111 2234567999999999999863 332110
Q ss_pred cCCCccccCCCCCCCCccCCCCccccccccC-CCCceecCC--CHHHHHHHhcCcCCCcEEEEcccccc
Q 014030 207 PESGMLLNTDNGTPMPQVGDISPGLLLKEKN-GTCRIFQGG--SVGHLHKLLSIESSSQVLYVGDHIYG 272 (432)
Q Consensus 207 ~~tg~l~~~~~~~p~~~~g~l~~~~~~~~~~-~~g~vY~gG--n~~~l~~ll~~~~G~~VLY~GDhI~~ 272 (432)
+ .++..+ .++ ....+-.-| |...+.++.. .|.+++-.|=-||+
T Consensus 151 -----~---------~KI~~l-------~~~~~~~~I~VDGGI~~~~i~~l~~--aGad~~V~GsaiF~ 196 (210)
T PRK08005 151 -----C---------EKVSQS-------REHFPAAECWADGGITLRAARLLAA--AGAQHLVIGRALFT 196 (210)
T ss_pred -----H---------HHHHHH-------HHhcccCCEEEECCCCHHHHHHHHH--CCCCEEEEChHhhC
Confidence 0 011100 000 111355555 4455666666 49999999977774
No 159
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=27.13 E-value=73 Score=30.51 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=28.1
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHH
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMN 159 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~ 159 (432)
++.....|++|+++|.+++++|+.++..+...+.
T Consensus 18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~ 51 (256)
T TIGR00099 18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNILK 51 (256)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 3567789999999999999999999876655544
No 160
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=26.20 E-value=2.2e+02 Score=31.78 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhc
Q 014030 349 DLEYQRDKARLSHQEAQRECHQKF 372 (432)
Q Consensus 349 ~l~~~~~~lr~~~~~~~~~~~~~f 372 (432)
+|.+++.+++....+..+++.+.+
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444443433
No 161
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.57 E-value=2.3e+02 Score=24.32 Aligned_cols=22 Identities=9% Similarity=0.286 Sum_probs=14.5
Q ss_pred cccccccccCCccchhhhhhhcccc
Q 014030 374 KVWGQLMKTGYQNSRFAHQVERFAC 398 (432)
Q Consensus 374 ~~~GSlFRtg~~~S~Fa~qv~ryAd 398 (432)
.+|.++||+- |.++..+.+|++
T Consensus 52 ~NW~nV~r~I---s~AS~~l~~~~~ 73 (103)
T PF08654_consen 52 ANWQNVFRAI---SMASLSLAKYSE 73 (103)
T ss_pred HhHHHHHHHH---HHHHhhhhhccc
Confidence 4688888865 355666666665
No 162
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=25.06 E-value=48 Score=31.98 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCC-----CCCCChHH--HHHHHHHHHHHhhcchhhHHHHHhCccccccc---CCChHHHHH
Q 014030 65 LAEAYLFAQLVDFMDNNPGKD-----SKSTDYVR--MYKDVRAAVDLCHRDGTLKQMVAKDPKTYINE---DRSIVPMLK 134 (432)
Q Consensus 65 lpe~~L~a~lVd~~d~~~~~~-----~~~~~y~~--l~~DV~~av~~~H~~G~l~~~v~~np~kYi~k---~~~l~~~L~ 134 (432)
.+-.-++.++.+|+++++.++ ........ ....+.+.+. +-..+.+.. ...--+.|.
T Consensus 79 ~~~~~vL~~i~~fl~~~p~E~vil~~~~~~~~~~~~~~~~~~~~l~-------------~~~~~~~~~~~~~~~~~ptL~ 145 (271)
T cd08557 79 QTLEDVLNEVKDFLDAHPSEVVILDLEHEYGGDNGEDHDELDALLR-------------DVLGDPLYRPPVRAGGWPTLG 145 (271)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEEEEEccCCCcchhhHHHHHHHHH-------------HHhCccccCCccccCCCCcHH
Confidence 566777899999999987652 00000101 1222222222 222222221 123447889
Q ss_pred HHHhcCCeEEEeeCCCc
Q 014030 135 MLRESGRSTFLVTNSLW 151 (432)
Q Consensus 135 ~lr~~GKklFLiTNS~~ 151 (432)
+|++ ||.||+..+...
T Consensus 146 el~~-gK~vi~~~~~~~ 161 (271)
T cd08557 146 ELRA-GKRVLLFYFGGD 161 (271)
T ss_pred HHhc-CCeEEEEECCCc
Confidence 9999 999999888664
No 163
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.83 E-value=4.1e+02 Score=24.81 Aligned_cols=11 Identities=27% Similarity=0.833 Sum_probs=7.8
Q ss_pred hhhhhhccccc
Q 014030 389 FAHQVERFACL 399 (432)
Q Consensus 389 Fa~qv~ryAdl 399 (432)
||++|.+|.-.
T Consensus 89 YA~rISk~t~~ 99 (188)
T PF10018_consen 89 YAHRISKFTSA 99 (188)
T ss_pred HHHHHHHhcCC
Confidence 77777777655
No 164
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=23.94 E-value=1.1e+02 Score=21.68 Aligned_cols=40 Identities=20% Similarity=0.290 Sum_probs=31.8
Q ss_pred HHHhCcccccccCCChHHHHHHHHhcCCeEEEeeCCCchh
Q 014030 114 MVAKDPKTYINEDRSIVPMLKMLRESGRSTFLVTNSLWDY 153 (432)
Q Consensus 114 ~v~~np~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~y 153 (432)
.++..+--.+..+..+...++.|++.|-..+.++|+.-.+
T Consensus 3 ~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~ 42 (57)
T PF00571_consen 3 DIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKL 42 (57)
T ss_dssp HHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBE
T ss_pred ECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEE
Confidence 3455566677788889999999999999999999877433
No 165
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=23.94 E-value=70 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.6
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCch
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWD 152 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~ 152 (432)
+++...++..|+.|-+++.|||++-.
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 46788999999999999999998763
No 166
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=23.64 E-value=95 Score=28.78 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=29.0
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
|.....|++|+++|.+++++|..++..+......+
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l 52 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALAKLI 52 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHh
Confidence 45678899999999999999999998777665443
No 167
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=23.63 E-value=5e+02 Score=25.26 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=12.5
Q ss_pred HhHHHHHHHHHHHHHHhhhHHHHHHHh
Q 014030 343 MCTRMDDLEYQRDKARLSHQEAQRECH 369 (432)
Q Consensus 343 ~~~~l~~l~~~~~~lr~~~~~~~~~~~ 369 (432)
+++.++++...+++|.-.+.+|...+.
T Consensus 89 L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 89 LEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 168
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=23.50 E-value=5e+02 Score=25.29 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Q 014030 304 DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQREC 368 (432)
Q Consensus 304 ~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~ 368 (432)
+...+|+.|+..++.|.+.+.. ....++--+++..|.+++.+.++++...+.+.+..
T Consensus 136 D~~arl~~l~~~~~rl~~ll~k--------a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEK--------AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445666666665555555532 11222333466777777777777777777666554
No 169
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=23.28 E-value=4.6e+02 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHhhhHHHHHHHhhhcc
Q 014030 343 MCTRMDDLEYQRDKARLSHQEAQRECHQKFH 373 (432)
Q Consensus 343 ~~~~l~~l~~~~~~lr~~~~~~~~~~~~~fn 373 (432)
++..+..+.+....++..+.++...+..+++
T Consensus 79 ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666667777777777777766665554
No 170
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.94 E-value=6.4e+02 Score=24.96 Aligned_cols=68 Identities=21% Similarity=0.220 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhH-HHHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHhh
Q 014030 292 LEREVELLWELR-DLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQ 370 (432)
Q Consensus 292 Le~Ei~~~~~~~-~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~ 370 (432)
|..|+.++.+.. .+..+|..|+...+.|++++..+. ..+...-.++...++.+...+..+.+....
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~-------------~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~ 160 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLK-------------ERLERLEKNLAEAEARLEEEVAEIREEGQE 160 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hc
Q 014030 371 KF 372 (432)
Q Consensus 371 ~f 372 (432)
.+
T Consensus 161 ~~ 162 (239)
T COG1579 161 LS 162 (239)
T ss_pred HH
No 171
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=22.49 E-value=6.5e+02 Score=24.90 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHhhhc
Q 014030 305 LRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQRECHQKF 372 (432)
Q Consensus 305 ~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~~~~f 372 (432)
+..+|..|+.....|+..+..+.... ..+.......+..+..+...+|..+....++|..+-
T Consensus 228 l~~el~~l~~~~~~Le~~l~~le~~~------~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 228 LQAELESLRAKNASLERQLRELEQRL------DEEREEYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhhhhhHHHHHHHH------HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666665443222 122234556777788888888888877766665543
No 172
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.45 E-value=1.2e+02 Score=32.61 Aligned_cols=41 Identities=5% Similarity=0.029 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccccccCCc
Q 014030 345 TRMDDLEYQRDKARLSHQEAQRECHQKFHKVWGQLMKTGYQ 385 (432)
Q Consensus 345 ~~l~~l~~~~~~lr~~~~~~~~~~~~~fn~~~GSlFRtg~~ 385 (432)
+.+.++..+..+|+....-...++++.|+-.---+|+++..
T Consensus 403 ~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakh 443 (521)
T KOG1937|consen 403 QDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKH 443 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 45566666777777777777778888888878888887643
No 173
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=22.36 E-value=1.4e+02 Score=29.18 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhccCCCCCCCCCCCCCCccCccEEEEccCCCCCCc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCGSHTLDGGITCNSDWLLYFDVVITGSAKPGFFH 195 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~~~~~~dWrdlFDvVIv~A~KP~FF~ 195 (432)
++.+...|+.+|+.|+|.=++=|-.-.- + ...|+ .+..|+|.+.+=.|+|=.
T Consensus 95 ~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~-~-~i~~~----------------l~~vD~VllMsVnPGfgG 146 (220)
T COG0036 95 TEHIHRTIQLIKELGVKAGLVLNPATPL-E-ALEPV----------------LDDVDLVLLMSVNPGFGG 146 (220)
T ss_pred CcCHHHHHHHHHHcCCeEEEEECCCCCH-H-HHHHH----------------HhhCCEEEEEeECCCCcc
Confidence 4678899999999999999888864332 1 12222 346799999999999954
No 174
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=22.20 E-value=92 Score=30.37 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=30.3
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhh
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFL 161 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl 161 (432)
|....+|++|++.|.++.++||-+...+...+..+
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l 58 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKEL 58 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHc
Confidence 34778999999999999999999998888877764
No 175
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=21.97 E-value=88 Score=28.75 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=29.9
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHH
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMN 159 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~ 159 (432)
+|+....|++|+++|.++++.|.-++..+...+.
T Consensus 17 ~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 17 SPETIEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp CHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred CHHHHHHHHhhcccceEEEEEccCcccccccccc
Confidence 3678899999999999999999999988777766
No 176
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=21.84 E-value=81 Score=30.54 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=32.9
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHhhcc
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNFLCG 163 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g 163 (432)
=|....+++.+++.|-+||+|||-+-.--+..++-|.-
T Consensus 117 ip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~ 154 (229)
T PF03767_consen 117 IPGALELYNYARSRGVKVFFITGRPESQREATEKNLKK 154 (229)
T ss_dssp ETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHH
Confidence 36677999999999999999999988888888888764
No 177
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.37 E-value=81 Score=26.45 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=23.3
Q ss_pred CChHHHHHHHHhcCCeEEEeeCCCchhhHH
Q 014030 127 RSIVPMLKMLRESGRSTFLVTNSLWDYTTI 156 (432)
Q Consensus 127 ~~l~~~L~~lr~~GKklFLiTNS~~~yt~~ 156 (432)
.++...++.+|+.|-++.+||+++-.-...
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 357788899999999999999876543333
No 178
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=21.15 E-value=1.1e+02 Score=28.43 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=28.6
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHH
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMN 159 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~ 159 (432)
.|.....|++|++.|.+++++|+-++..+..+..
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~ 53 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGNTVPFARALAV 53 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHH
Confidence 4567889999999999999999999987766543
No 179
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.88 E-value=4.6e+02 Score=21.25 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhhhhcccCCCChhHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Q 014030 290 PELEREVELLWELRDLRKKLHLLRNERDLIEDQIHHLKWSLKSEGIDVDEQRKMCTRMDDLEYQRDKARLSHQEAQREC 368 (432)
Q Consensus 290 ~ELe~Ei~~~~~~~~~~~~l~~L~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~lr~~~~~~~~~~ 368 (432)
||...+|..+......+.+|-. .-..|.+.+.+...++ .+....+++.+.+++=+|++.+..+...+
T Consensus 3 ~Efr~~is~Lk~~dahF~rLfd---~hn~LDd~I~~~E~n~---------~~~s~~ev~~LKKqkL~LKDEi~~~L~~a 69 (72)
T COG2841 3 HEFRDLISKLKANDAHFARLFD---KHNELDDRIKRAEGNR---------QPGSDAEVSNLKKQKLQLKDEIASILQKA 69 (72)
T ss_pred hhHHHHHHHHhccchHHHHHHH---HHhHHHHHHHHHhcCC---------CCCcHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6677778777766665554432 2233555555443221 12234678889999999999887776544
No 180
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=20.24 E-value=6.5e+02 Score=25.66 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=24.0
Q ss_pred cccHHHHHHHHH-hHHHHHHHHHHHhhHHHHHHHHHhhh
Q 014030 290 PELEREVELLWE-LRDLRKKLHLLRNERDLIEDQIHHLK 327 (432)
Q Consensus 290 ~ELe~Ei~~~~~-~~~~~~~l~~L~~~~~~l~~~~~~l~ 327 (432)
.+++.|++.+.. .....++|..|+..++.+++++..+.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le 84 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELE 84 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666664443 33566677777777777777666544
No 181
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=20.21 E-value=1.8e+02 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHhcCCeEEEee-CCCchhhHHHHHhh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVT-NSLWDYTTIVMNFL 161 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiT-NS~~~yt~~~M~yl 161 (432)
-|+++..|+.|+++|-++-+++ ++.-+.+..+|+-+
T Consensus 47 ypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l 83 (169)
T PF12689_consen 47 YPDVPEILQELKERGVKLAVASRTDEPDWARELLKLL 83 (169)
T ss_dssp -TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhc
Confidence 5889999999999999998888 45556777777654
No 182
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=20.20 E-value=1.2e+02 Score=28.34 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHhcCCeEEEeeCCCchhhHHHHHh
Q 014030 126 DRSIVPMLKMLRESGRSTFLVTNSLWDYTTIVMNF 160 (432)
Q Consensus 126 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~y 160 (432)
.|.....|++|+++|.++.++|.-++..+......
T Consensus 22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~ 56 (230)
T PRK01158 22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKL 56 (230)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHH
Confidence 35677899999999999999999999887766544
Done!