Query 014031
Match_columns 432
No_of_seqs 276 out of 2000
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 01:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0613 Predicted metal-depend 100.0 3.1E-37 6.8E-42 301.5 21.8 246 72-327 1-251 (258)
2 PRK09248 putative hydrolase; V 99.8 7.9E-19 1.7E-23 170.2 16.5 179 72-335 2-202 (246)
3 PRK00448 polC DNA polymerase I 99.8 4E-19 8.7E-24 205.7 7.8 205 71-318 331-562 (1437)
4 TIGR00375 conserved hypothetic 99.7 5.4E-16 1.2E-20 158.5 15.1 180 75-336 2-199 (374)
5 smart00481 POLIIIAc DNA polyme 99.7 2.6E-16 5.7E-21 122.9 8.5 64 76-139 1-66 (67)
6 PF02811 PHP: PHP domain; Int 99.7 1.7E-15 3.7E-20 136.9 15.0 78 75-158 1-80 (175)
7 PRK07328 histidinol-phosphatas 99.7 1.4E-15 3E-20 149.6 15.4 185 72-326 1-234 (269)
8 PRK08392 hypothetical protein; 99.7 1.4E-15 3.1E-20 144.9 14.1 174 75-335 1-191 (215)
9 PRK05672 dnaE2 error-prone DNA 99.5 1.2E-13 2.6E-18 157.4 18.5 117 73-206 4-122 (1046)
10 PRK08123 histidinol-phosphatas 99.5 2.3E-13 5E-18 134.1 16.4 68 72-139 1-93 (270)
11 TIGR01856 hisJ_fam histidinol 99.5 1.1E-13 2.4E-18 135.0 13.9 181 75-326 1-242 (253)
12 PRK09532 DNA polymerase III su 99.5 3E-13 6.5E-18 151.8 19.1 97 73-171 2-101 (874)
13 PRK00912 ribonuclease P protei 99.5 2.9E-13 6.3E-18 130.8 14.4 162 72-326 1-180 (237)
14 PRK07945 hypothetical protein; 99.5 3.2E-13 7E-18 137.1 14.7 174 71-326 94-297 (335)
15 PRK06361 hypothetical protein; 99.5 1.1E-12 2.4E-17 124.3 16.2 162 79-325 1-173 (212)
16 PRK05588 histidinol-phosphatas 99.5 4.2E-13 9.1E-18 130.9 12.6 183 74-326 1-223 (255)
17 PRK07135 dnaE DNA polymerase I 99.4 1.9E-13 4.1E-18 154.0 10.0 89 74-174 3-93 (973)
18 PRK08609 hypothetical protein; 99.4 2.5E-12 5.5E-17 139.0 16.6 208 32-326 295-531 (570)
19 COG1387 HIS2 Histidinol phosph 99.4 3.8E-12 8.2E-17 123.4 15.7 180 73-337 1-205 (237)
20 PRK05673 dnaE DNA polymerase I 99.4 3.4E-12 7.5E-17 146.6 17.8 97 74-172 2-102 (1135)
21 PRK06920 dnaE DNA polymerase I 99.3 3E-11 6.5E-16 138.2 16.5 94 73-172 2-97 (1107)
22 TIGR01405 polC_Gram_pos DNA po 99.3 4.2E-12 9E-17 146.3 9.5 73 69-141 99-173 (1213)
23 PRK07329 hypothetical protein; 99.3 1.2E-11 2.7E-16 120.3 11.3 180 74-326 1-222 (246)
24 PRK06826 dnaE DNA polymerase I 99.3 1.1E-11 2.4E-16 142.4 11.6 101 71-173 2-108 (1151)
25 PRK07279 dnaE DNA polymerase I 99.3 1.2E-11 2.5E-16 140.3 10.9 93 73-173 1-95 (1034)
26 PRK05898 dnaE DNA polymerase I 99.3 1.5E-11 3.2E-16 138.2 11.0 94 73-176 1-96 (971)
27 COG1379 PHP family phosphoeste 99.3 4E-11 8.6E-16 118.5 12.4 200 72-348 2-221 (403)
28 TIGR00594 polc DNA-directed DN 99.3 1.5E-11 3.2E-16 140.4 10.8 99 74-174 1-106 (1022)
29 PRK07374 dnaE DNA polymerase I 99.3 1.7E-11 3.6E-16 141.0 11.1 99 73-173 2-105 (1170)
30 COG0587 DnaE DNA polymerase II 99.2 3E-11 6.5E-16 137.7 11.5 101 72-175 2-104 (1139)
31 PRK06740 histidinol-phosphatas 99.2 3E-10 6.6E-15 115.3 12.9 74 255-335 206-301 (331)
32 COG2176 PolC DNA polymerase II 99.0 5.8E-10 1.3E-14 124.7 7.4 72 70-141 332-405 (1444)
33 COG4464 CapC Capsular polysacc 98.9 7.2E-09 1.6E-13 97.8 9.1 174 74-329 1-202 (254)
34 PF13263 PHP_C: PHP-associated 96.7 0.00074 1.6E-08 51.1 1.6 42 302-348 4-49 (56)
35 PF12228 DUF3604: Protein of u 90.6 0.23 5E-06 54.2 3.6 48 71-118 5-72 (592)
36 cd01292 metallo-dependent_hydr 88.0 13 0.00027 34.7 13.1 69 252-325 162-238 (275)
37 TIGR00010 hydrolase, TatD fami 87.0 1.1 2.5E-05 42.5 5.4 61 74-136 1-61 (252)
38 COG0084 TatD Mg-dependent DNas 82.6 2.9 6.2E-05 41.4 6.0 55 72-127 1-55 (256)
39 PF01026 TatD_DNase: TatD rela 77.5 3.8 8.2E-05 39.9 5.0 62 75-137 1-62 (255)
40 PRK10812 putative DNAse; Provi 76.6 5.2 0.00011 39.6 5.7 54 73-127 2-58 (265)
41 COG2355 Zn-dependent dipeptida 76.4 11 0.00023 38.6 7.9 23 253-275 204-227 (313)
42 PRK13125 trpA tryptophan synth 75.2 6.5 0.00014 38.2 5.9 61 76-138 76-138 (244)
43 PRK11449 putative deoxyribonuc 74.5 6.1 0.00013 38.9 5.6 53 73-126 4-56 (258)
44 PRK10425 DNase TatD; Provision 74.3 6.1 0.00013 38.9 5.5 53 74-127 1-53 (258)
45 cd01306 PhnM PhnM is believed 72.2 1E+02 0.0022 31.6 13.9 46 70-115 77-123 (325)
46 PF10566 Glyco_hydro_97: Glyco 72.1 9.6 0.00021 38.1 6.3 76 249-328 71-161 (273)
47 cd01310 TatD_DNAse TatD like p 68.7 10 0.00023 35.8 5.6 58 74-133 1-58 (251)
48 PRK12581 oxaloacetate decarbox 67.3 17 0.00036 39.2 7.3 46 90-135 107-153 (468)
49 COG0800 Eda 2-keto-3-deoxy-6-p 65.8 22 0.00048 34.2 7.1 59 254-313 4-63 (211)
50 COG5016 Pyruvate/oxaloacetate 62.9 27 0.00059 36.9 7.5 49 90-138 100-149 (472)
51 cd01295 AdeC Adenine deaminase 62.3 15 0.00033 38.5 5.8 60 73-134 10-74 (422)
52 PF06375 BLVR: Bovine leukaemi 60.3 2.9 6.2E-05 38.3 0.0 20 9-28 83-102 (154)
53 TIGR00640 acid_CoA_mut_C methy 55.7 24 0.00052 31.3 5.1 49 85-133 37-90 (132)
54 TIGR01501 MthylAspMutase methy 54.4 37 0.0008 30.3 6.1 41 88-128 39-81 (134)
55 TIGR03234 OH-pyruv-isom hydrox 53.5 28 0.00061 33.4 5.7 42 278-319 16-58 (254)
56 PRK09997 hydroxypyruvate isome 52.3 34 0.00073 33.1 6.0 41 278-318 17-58 (258)
57 PRK05718 keto-hydroxyglutarate 52.2 50 0.0011 31.7 7.0 60 253-313 5-65 (212)
58 PRK09358 adenosine deaminase; 52.0 13 0.00027 37.7 3.1 31 71-104 9-39 (340)
59 TIGR01975 isoAsp_dipep isoaspa 51.8 3E+02 0.0066 28.7 14.8 60 72-133 56-127 (389)
60 PRK07228 N-ethylammeline chlor 50.5 47 0.001 34.8 7.2 64 72-137 56-148 (445)
61 PF00962 A_deaminase: Adenosin 50.0 14 0.00031 37.0 3.1 30 71-103 1-30 (331)
62 PRK06552 keto-hydroxyglutarate 49.4 55 0.0012 31.4 6.8 65 255-320 5-74 (213)
63 PTZ00124 adenosine deaminase; 49.4 14 0.00031 38.3 3.0 30 72-104 35-64 (362)
64 COG0159 TrpA Tryptophan syntha 49.2 1.1E+02 0.0024 30.6 9.0 36 279-314 112-148 (265)
65 TIGR01182 eda Entner-Doudoroff 49.1 26 0.00056 33.5 4.5 44 86-134 65-108 (204)
66 TIGR00262 trpA tryptophan synt 47.9 1.1E+02 0.0023 30.2 8.8 69 252-320 103-172 (256)
67 COG0826 Collagenase and relate 47.2 36 0.00078 35.2 5.5 65 251-320 49-120 (347)
68 cd02072 Glm_B12_BD B12 binding 47.0 62 0.0014 28.7 6.3 41 88-128 37-79 (128)
69 cd03309 CmuC_like CmuC_like. P 46.0 69 0.0015 32.7 7.3 66 251-321 198-265 (321)
70 COG0613 Predicted metal-depend 45.3 10 0.00023 37.3 1.2 75 250-326 97-179 (258)
71 PF01301 Glyco_hydro_35: Glyco 44.2 34 0.00073 34.8 4.7 49 270-318 16-81 (319)
72 PRK09989 hypothetical protein; 42.6 50 0.0011 31.9 5.5 40 279-318 18-58 (258)
73 PTZ00170 D-ribulose-5-phosphat 42.5 78 0.0017 30.5 6.8 58 72-139 65-124 (228)
74 cd01312 Met_dep_hydrolase_D Me 42.1 4.1E+02 0.0089 27.4 13.5 64 257-325 220-292 (381)
75 PRK10027 cryptic adenine deami 41.0 40 0.00087 37.4 5.0 62 73-136 85-151 (588)
76 PRK08883 ribulose-phosphate 3- 39.7 1.7E+02 0.0037 28.2 8.5 70 252-321 69-138 (220)
77 PRK09856 fructoselysine 3-epim 39.6 82 0.0018 30.4 6.5 43 278-320 15-67 (275)
78 PRK06552 keto-hydroxyglutarate 39.4 45 0.00098 32.0 4.5 45 86-135 73-117 (213)
79 PRK07114 keto-hydroxyglutarate 38.3 98 0.0021 30.0 6.7 57 252-309 4-61 (222)
80 PF01081 Aldolase: KDPG and KH 37.7 48 0.001 31.5 4.3 44 86-134 65-108 (196)
81 PF13704 Glyco_tranf_2_4: Glyc 37.0 94 0.002 24.9 5.5 33 90-122 7-39 (97)
82 PRK13209 L-xylulose 5-phosphat 37.0 60 0.0013 31.6 5.1 41 278-318 23-75 (283)
83 TIGR03849 arch_ComA phosphosul 36.4 88 0.0019 30.7 6.0 64 253-316 43-116 (237)
84 TIGR01430 aden_deam adenosine 36.2 32 0.00068 34.6 3.1 29 73-104 2-30 (324)
85 COG1902 NemA NADH:flavin oxido 36.0 77 0.0017 33.0 5.9 23 251-273 83-107 (363)
86 cd05017 SIS_PGI_PMI_1 The memb 36.0 81 0.0018 26.7 5.2 38 88-131 57-94 (119)
87 PTZ00170 D-ribulose-5-phosphat 35.9 1.9E+02 0.004 27.9 8.2 59 255-314 54-115 (228)
88 PF01120 Alpha_L_fucos: Alpha- 35.7 56 0.0012 33.5 4.8 54 83-138 86-160 (346)
89 PRK00971 glutaminase; Provisio 34.9 5.1E+02 0.011 26.5 12.3 24 215-238 168-192 (307)
90 PLN03059 beta-galactosidase; P 34.3 69 0.0015 37.0 5.6 48 271-318 52-116 (840)
91 cd01320 ADA Adenosine deaminas 33.7 38 0.00081 33.9 3.1 30 72-104 2-31 (325)
92 PRK13125 trpA tryptophan synth 33.4 2E+02 0.0043 27.8 8.1 69 251-319 88-159 (244)
93 cd04726 KGPDC_HPS 3-Keto-L-gul 33.1 2E+02 0.0043 26.4 7.7 61 255-315 42-105 (202)
94 PRK10657 isoaspartyl dipeptida 32.6 1.2E+02 0.0025 31.0 6.6 60 72-133 56-127 (388)
95 PF13380 CoA_binding_2: CoA bi 32.1 92 0.002 26.7 4.9 41 91-134 69-110 (116)
96 COG3473 Maleate cis-trans isom 32.0 1.9E+02 0.0042 28.1 7.3 74 254-336 88-163 (238)
97 TIGR03128 RuMP_HxlA 3-hexulose 30.6 1.4E+02 0.003 27.7 6.3 42 90-133 64-108 (206)
98 cd02071 MM_CoA_mut_B12_BD meth 30.3 1E+02 0.0022 26.4 4.9 42 85-126 34-77 (122)
99 TIGR01182 eda Entner-Doudoroff 29.8 1.4E+02 0.003 28.6 6.1 58 258-316 3-62 (204)
100 PRK02083 imidazole glycerol ph 29.5 2E+02 0.0044 27.8 7.4 49 85-133 150-203 (253)
101 TIGR02967 guan_deamin guanine 29.5 1.4E+02 0.0031 30.7 6.7 40 95-136 97-138 (401)
102 PRK02261 methylaspartate mutas 29.0 1.8E+02 0.0038 25.8 6.3 47 87-133 40-91 (137)
103 PRK07114 keto-hydroxyglutarate 28.3 87 0.0019 30.4 4.5 44 86-134 76-119 (222)
104 PRK00311 panB 3-methyl-2-oxobu 27.9 2.7E+02 0.0058 27.7 7.9 111 253-371 119-253 (264)
105 COG1603 RPP1 RNase P/RNase MRP 27.8 5.9E+02 0.013 25.0 13.2 71 254-325 87-174 (229)
106 TIGR00262 trpA tryptophan synt 27.3 2.5E+02 0.0054 27.6 7.6 37 279-315 105-142 (256)
107 PF09692 Arb1: Argonaute siRNA 27.2 28 0.0006 36.7 0.9 19 290-308 276-298 (396)
108 COG2185 Sbm Methylmalonyl-CoA 27.2 1.3E+02 0.0029 27.3 5.1 46 86-131 48-95 (143)
109 PRK08203 hydroxydechloroatrazi 26.7 1.6E+02 0.0035 30.9 6.6 63 72-136 59-157 (451)
110 PRK09228 guanine deaminase; Pr 26.5 1.7E+02 0.0036 30.8 6.7 40 96-137 123-164 (433)
111 PF02679 ComA: (2R)-phospho-3- 26.5 93 0.002 30.7 4.3 64 253-316 56-129 (244)
112 PF01726 LexA_DNA_bind: LexA D 26.2 1.2E+02 0.0026 23.5 4.2 41 188-228 17-57 (65)
113 cd06556 ICL_KPHMT Members of t 26.0 2.2E+02 0.0048 27.8 6.9 70 253-325 114-206 (240)
114 PRK13111 trpA tryptophan synth 25.9 1.3E+02 0.0028 29.8 5.3 47 88-135 104-150 (258)
115 TIGR01178 ade adenine deaminas 25.9 85 0.0018 34.5 4.4 61 72-134 50-115 (552)
116 COG1082 IolE Sugar phosphate i 25.8 2E+02 0.0042 27.5 6.5 47 85-131 12-62 (274)
117 TIGR03234 OH-pyruv-isom hydrox 25.4 1.8E+02 0.004 27.7 6.3 44 87-131 13-56 (254)
118 COG1137 YhbG ABC-type (unclass 25.0 50 0.0011 32.1 2.1 23 89-112 177-199 (243)
119 KOG2422 Uncharacterized conser 24.7 34 0.00074 37.7 1.1 17 98-114 239-255 (665)
120 PRK08091 ribulose-phosphate 3- 24.6 4E+02 0.0087 25.9 8.3 70 252-321 79-150 (228)
121 PRK13210 putative L-xylulose 5 24.6 1.3E+02 0.0028 29.1 5.1 39 279-317 19-69 (284)
122 cd00952 CHBPH_aldolase Trans-o 24.4 3.5E+02 0.0076 27.2 8.3 89 251-348 58-161 (309)
123 cd00717 URO-D Uroporphyrinogen 24.4 2.8E+02 0.0061 27.9 7.7 64 251-321 215-281 (335)
124 PF03659 Glyco_hydro_71: Glyco 24.3 1E+02 0.0022 32.3 4.5 46 93-138 22-71 (386)
125 cd00443 ADA_AMPD Adenosine/AMP 24.1 61 0.0013 32.5 2.7 24 73-99 2-25 (305)
126 cd05014 SIS_Kpsf KpsF-like pro 23.9 92 0.002 26.2 3.4 26 87-112 60-85 (128)
127 PRK14042 pyruvate carboxylase 23.7 2.7E+02 0.0059 31.1 7.8 87 90-176 98-193 (596)
128 TIGR01463 mtaA_cmuA methyltran 23.6 2.8E+02 0.0061 27.9 7.5 65 251-322 220-286 (340)
129 cd03174 DRE_TIM_metallolyase D 23.5 3.2E+02 0.007 26.0 7.6 49 91-139 77-140 (265)
130 PF01261 AP_endonuc_2: Xylose 23.4 80 0.0017 28.4 3.2 36 282-317 1-44 (213)
131 PF14871 GHL6: Hypothetical gl 23.4 1.5E+02 0.0033 26.2 4.8 49 89-137 1-67 (132)
132 cd03465 URO-D_like The URO-D _ 23.3 2.3E+02 0.005 28.1 6.7 66 251-323 208-275 (330)
133 PF01208 URO-D: Uroporphyrinog 23.0 1.3E+02 0.0028 30.2 4.9 67 251-323 220-288 (343)
134 PF07894 DUF1669: Protein of u 22.5 1.5E+02 0.0033 29.9 5.1 35 72-107 118-152 (284)
135 PRK08745 ribulose-phosphate 3- 22.4 4.7E+02 0.01 25.2 8.4 70 252-321 73-142 (223)
136 PLN02591 tryptophan synthase 22.2 1.5E+02 0.0032 29.3 4.9 45 88-133 93-137 (250)
137 PRK08309 short chain dehydroge 22.2 53 0.0012 30.3 1.7 26 404-429 146-171 (177)
138 smart00812 Alpha_L_fucos Alpha 22.1 1.8E+02 0.0039 30.5 5.8 51 86-138 79-150 (384)
139 PF10788 DUF2603: Protein of u 22.1 5.9E+02 0.013 23.0 9.2 41 166-206 59-99 (137)
140 PRK09140 2-dehydro-3-deoxy-6-p 21.9 2.3E+02 0.005 26.9 6.0 56 257-313 4-60 (206)
141 TIGR02631 xylA_Arthro xylose i 21.9 1.5E+02 0.0031 31.1 5.0 41 278-318 34-86 (382)
142 CHL00200 trpA tryptophan synth 21.9 1.6E+02 0.0036 29.1 5.2 42 90-132 108-149 (263)
143 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.8 1E+02 0.0022 25.8 3.3 30 83-112 55-84 (126)
144 PF07905 PucR: Purine cataboli 21.7 2.2E+02 0.0047 24.5 5.4 42 89-130 60-102 (123)
145 COG0036 Rpe Pentose-5-phosphat 21.7 7.5E+02 0.016 24.1 9.6 70 252-321 72-141 (220)
146 TIGR00676 fadh2 5,10-methylene 21.7 7.7E+02 0.017 24.2 14.4 64 250-313 109-183 (272)
147 PRK13523 NADPH dehydrogenase N 21.6 2.3E+02 0.005 29.0 6.4 23 252-274 82-106 (337)
148 PRK13813 orotidine 5'-phosphat 21.4 1.6E+02 0.0035 27.6 4.9 60 72-137 55-116 (215)
149 PRK00115 hemE uroporphyrinogen 21.2 3.5E+02 0.0075 27.5 7.6 64 251-321 224-290 (346)
150 PF13594 Amidohydro_5: Amidohy 21.2 69 0.0015 24.4 1.9 32 73-104 35-67 (68)
151 cd04735 OYE_like_4_FMN Old yel 21.0 1.9E+02 0.0042 29.6 5.7 24 251-274 78-103 (353)
152 PF07722 Peptidase_C26: Peptid 21.0 1.9E+02 0.0042 27.5 5.3 45 254-323 27-72 (217)
153 PRK06380 metal-dependent hydro 21.0 2.5E+02 0.0054 29.0 6.6 61 72-136 54-142 (418)
154 PF07643 DUF1598: Protein of u 20.9 1.3E+02 0.0029 24.9 3.5 16 212-227 51-66 (84)
155 TIGR01464 hemE uroporphyrinoge 20.9 3.5E+02 0.0075 27.3 7.5 64 251-321 218-284 (338)
156 PF02310 B12-binding: B12 bind 20.9 1.4E+02 0.003 24.9 3.9 26 85-110 35-60 (121)
157 PRK08005 epimerase; Validated 20.7 5.8E+02 0.013 24.4 8.5 69 252-320 69-137 (210)
158 PRK09997 hydroxypyruvate isome 20.7 2.3E+02 0.005 27.2 5.9 45 86-131 13-57 (258)
159 PRK13210 putative L-xylulose 5 20.6 1.4E+02 0.0031 28.7 4.5 46 86-131 14-69 (284)
160 PRK12677 xylose isomerase; Pro 20.6 2.1E+02 0.0046 29.9 5.9 43 88-130 31-83 (384)
161 cd01301 rDP_like renal dipepti 20.4 2.5E+02 0.0055 28.4 6.3 21 308-328 250-271 (309)
162 cd00003 PNPsynthase Pyridoxine 20.3 3.8E+02 0.0082 26.4 7.1 70 251-324 110-193 (234)
163 cd04733 OYE_like_2_FMN Old yel 20.2 2.4E+02 0.0052 28.7 6.2 18 252-269 83-100 (338)
164 cd02067 B12-binding B12 bindin 20.2 3.4E+02 0.0073 22.7 6.2 43 83-125 32-76 (119)
165 cd06557 KPHMT-like Ketopantoat 20.2 5.2E+02 0.011 25.6 8.3 110 253-370 116-249 (254)
166 PRK00748 1-(5-phosphoribosyl)- 20.1 3.9E+02 0.0084 25.1 7.3 46 88-133 30-80 (233)
167 PRK12356 glutaminase; Reviewed 20.1 9.6E+02 0.021 24.7 12.5 60 178-239 137-197 (319)
168 PF01081 Aldolase: KDPG and KH 20.1 3E+02 0.0065 26.1 6.3 62 257-319 2-65 (196)
No 1
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=100.00 E-value=3.1e-37 Score=301.54 Aligned_cols=246 Identities=37% Similarity=0.522 Sum_probs=222.6
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH-HHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI-ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~-~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
||++||||||++|||.++|.+++++|++.|++++|||||||+.|+.++. .+....|+.+|||+|+++.+. +..
T Consensus 1 ~~~~DLHvHSt~Sdg~~~p~~vv~~A~~~g~~vlAiTDHdt~~g~~~a~~~~~~~l~i~vipG~Ei~t~~~------~~~ 74 (258)
T COG0613 1 WMKADLHVHTTASDGGLTPREVVERAKAKGVDVLAITDHDTVRGLLEARRAAGLRLGITVIPGIEISTTWG------GHI 74 (258)
T ss_pred CcceeeeEecccCCCCCCHHHHHHHHHHcCCCEEEECCcccccccHHHHHHhhcCCCceeeccEEeecccC------CeE
Confidence 6899999999999999999999999999999999999999999999987 444567999999999999986 789
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 014031 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~~~ 230 (432)
+|+++|+.+. ....+.+++.+.+..|.+|++.+.+++...+++..|+.+...++.+ .+.|+|++..+++.+++.+.
T Consensus 75 ih~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~-~~~~~h~~~~~ve~~~~~~~ 150 (258)
T COG0613 75 IHILGLGIDI---TDEPLVEGLARQQLYREERLEEIKERLGKAIIPHPFEGARKLAGLG-AITRAHIARDAVEVGNASTR 150 (258)
T ss_pred EEEEeecccc---cchhhhhhhhhccccHHHHHHHHHHhCCccccCcchHHHHhcCCcc-cchhhhhhhhhhccccccch
Confidence 9999999864 2345888899999999999999999999999999999888877654 46799999999999999999
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCc-HHHHHHHHHcCccEEEEecCC---CcHHHHH
Q 014031 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-AAIIRKLKDVGLHGLEVYRSD---GKLVAYT 306 (432)
Q Consensus 231 ~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~~~-~~li~~L~~~GldGIEv~~~~---~~~~~~~ 306 (432)
.+.|.+|+..++++|+++.+.+.++.|..++.+||+.|+|||.++..+ ..++..+.+.|.+|+|+++.. ++...+.
T Consensus 151 ~~~fn~~~~~~~~~~~~~~~~~~~~~i~~~~ga~g~~v~ahp~r~~~~~~~lv~~~~~~~~~~ie~~~~~~~~~~~~~~~ 230 (258)
T COG0613 151 QGVFNKYLKRGAPKYVPPEWADSEAHVGAIHGAGGTAVLAHPGRYDLSLKRLVEAFADHGGDGIEVIYGAISPNPREVLA 230 (258)
T ss_pred HHHHHHHHhccCcccCcccccCHHHHHHHHhhceeEEEeccccccccchhHHHHHHHhcCCCceEEecccCCcchHHHHH
Confidence 999999999999999999999999999999999999999999988654 678889999999999999876 3567788
Q ss_pred HHHHHcCCeeEeCCCCCCCCC
Q 014031 307 DLADTYGLLKLGGSDYHGRGG 327 (432)
Q Consensus 307 ~lA~~~gLl~tgGSDfHg~~~ 327 (432)
.+++.++++.|+|||||.++.
T Consensus 231 ~~~k~~~~l~s~gs~fh~~~~ 251 (258)
T COG0613 231 LLAKEFGLLASVGSDFHTPGD 251 (258)
T ss_pred HHHHHhhhhhcccccccCCCc
Confidence 899999999999999999864
No 2
>PRK09248 putative hydrolase; Validated
Probab=99.80 E-value=7.9e-19 Score=170.24 Aligned_cols=179 Identities=23% Similarity=0.317 Sum_probs=119.1
Q ss_pred ceeEcceeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCC-CCCH------HHHHHH-HHhCCCeEeeEEEEEEeecC
Q 014031 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDT-MSGI------PEAIET-ARRFGMKIIPGVEISTIFCQ 142 (432)
Q Consensus 72 ~~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt-~~g~------~~~~~~-a~~~gi~vI~GiEis~~~~~ 142 (432)
.|++|+|+||.+| ||..+++++++.|++.|++.|+||||.. ..+. ....+. .+..+|.++.|+|+......
T Consensus 2 ~~~~D~H~HT~~s~~~~~~~~e~v~~A~~~G~~~i~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~i~il~GiE~~~~~~~ 81 (246)
T PRK09248 2 KYPVDTHTHTIASGHAYSTLHENAAEAKQKGLKLFAITDHGPDMPGAPHYWHFGNLRVLPRKVDGVGILRGIEANIKNYD 81 (246)
T ss_pred ccceEeCcCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCcCCCCCHHHHHHHHHHHHhhcCCeEEEEEEeccccCC
Confidence 4689999999999 8999999999999999999999999985 3321 111121 12368999999999875310
Q ss_pred CCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHH
Q 014031 143 RGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMV 222 (432)
Q Consensus 143 ~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv 222 (432)
... +.+..+ +.. +|+ .++..|..
T Consensus 82 ------~~~--------------~~~~~~------------------~~~----~D~-----------vi~svH~~---- 104 (246)
T PRK09248 82 ------GEI--------------DLPGDM------------------LKK----LDI-----------VIAGFHEP---- 104 (246)
T ss_pred ------Ccc--------------cCCHhH------------------hhh----CCE-----------EEEecccC----
Confidence 000 000000 000 000 11111200
Q ss_pred HcCccccHHHHHHHHhhCCCCcccCCC-CCCHHHHHHHHHHcCCEEEEeCCCCCCC---cHHHHHHHHHcCccEEEEecC
Q 014031 223 EAGHVENLKQAFARYLYDGGPAYSTGS-EPLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLHGLEVYRS 298 (432)
Q Consensus 223 ~~G~~~~~~~af~~yl~~~gp~yv~~~-~~~~eeaI~~I~~aGGi~VLAHP~~~~~---~~~li~~L~~~GldGIEv~~~ 298 (432)
.+ .+.. ....+++++.| .+|++.|||||+++.. ...+++.+++.|+ +||++++
T Consensus 105 --~~-------------------~~~~~~~~~~~~i~~l-~~g~~~vLAHP~~~~~~~~~~~~~~~~~~~g~-~lEvN~~ 161 (246)
T PRK09248 105 --VF-------------------APGDKETNTQALINAI-KNGRVDIIGHPGNPKYPIDIEAVVKAAKEHNV-ALEINNS 161 (246)
T ss_pred --cc-------------------CCcCHHHHHHHHHHHH-hcCCCCEEECcCCCCCcccHHHHHHHHHHhCC-EEEEECC
Confidence 00 0000 01346778888 8999999999986542 3566788888897 9999875
Q ss_pred CC---------cHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccc
Q 014031 299 DG---------KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS 335 (432)
Q Consensus 299 ~~---------~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~ 335 (432)
.. ....+.+++.++|++.+.|||+|.+. .+|.
T Consensus 162 ~l~~~~~g~~~~~~~~~~~~~~~g~~~~~gSDAH~~~-----~vg~ 202 (246)
T PRK09248 162 SFGHSRKGSEDNCRAIAALCKKAGVWVALGSDAHIAF-----DIGN 202 (246)
T ss_pred CCccCCCCCcChHHHHHHHHHHcCCeEEEeCCCCChh-----hhcc
Confidence 32 45678899999999999999999974 5774
No 3
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=99.77 E-value=4e-19 Score=205.74 Aligned_cols=205 Identities=26% Similarity=0.355 Sum_probs=149.8
Q ss_pred CceeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCC
Q 014031 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESE 148 (432)
Q Consensus 71 ~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~ 148 (432)
...++|||+||.+| ||.++|++++++|+++|+++||||||+++.+++++.+++++.||++|+|+|+++.+.
T Consensus 331 ~~KrvdLH~HT~~S~~Dg~~~~~elv~~A~~~G~~aIAITDH~~v~~~p~a~~~~k~~gikvI~GvE~~~~~~------- 403 (1437)
T PRK00448 331 EEKRVELHLHTKMSTMDAIPSVSELVKRAAKWGHKAIAITDHGVVQAFPEAYNAAKKAGIKVIYGVEANLVDD------- 403 (1437)
T ss_pred ccceEEecccccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCCcCHHHHHHHHHhcCCceEeeeeEEEecc-------
Confidence 56789999999999 999999999999999999999999999999999999999999999999999999753
Q ss_pred CcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccc
Q 014031 149 EPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (432)
Q Consensus 149 ~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~ 228 (432)
.+|+ +|+.+. ..|. +.+.++-.++.-|++..++++.+++. ++++.|.+.
T Consensus 404 -~~~i-v~~~~~-----~~L~------------~~~~VVfDLETTGL~~~~deIIEIgA------------V~V~~G~ii 452 (1437)
T PRK00448 404 -GVPI-VYNEVD-----RDLK------------DATYVVFDVETTGLSAVYDEIIEIGA------------VKIKNGEII 452 (1437)
T ss_pred -ceeE-EecCCc-----hhhc------------cCcEEEEEhhhcCCCCchhhhheeee------------EEEeCCeEe
Confidence 3455 587642 2222 12234455677788887777766531 233445432
Q ss_pred cHHHHHHHHhhCCCCc-------------ccCCCCCCHHHHHHHHHH-cCCEEEEeCCCCCCCcHHHHHH--------HH
Q 014031 229 NLKQAFARYLYDGGPA-------------YSTGSEPLAEVAVQLIHR-TGGLAVLAHPWALKNPAAIIRK--------LK 286 (432)
Q Consensus 229 ~~~~af~~yl~~~gp~-------------yv~~~~~~~eeaI~~I~~-aGGi~VLAHP~~~~~~~~li~~--------L~ 286 (432)
+.|..|+.++.+. ++. ..++++|+++.+++ +||.+++|||..++.. -+-.. +.
T Consensus 453 ---e~F~~~V~P~~~I~~~~~~LTGIT~e~L~-~aps~~EaL~~f~~figg~vLVAHNa~FD~~-fL~~~l~rlgl~~l~ 527 (1437)
T PRK00448 453 ---DKFEFFIKPGHPLSAFTTELTGITDDMVK-DAPSIEEVLPKFKEFCGDSILVAHNASFDVG-FINTNYEKLGLEKIK 527 (1437)
T ss_pred ---eeEEEEECCCCCCCHHHHHHhCCCHHHHc-CCCCHHHHHHHHHHHhCCCEEEEeCccccHH-HHHHHHHHcCCcccc
Confidence 4566666665532 222 46789999999999 7999999999765321 11112 22
Q ss_pred HcCccEEEEecCC---CcHHHHHHHHHHcCCeeEe
Q 014031 287 DVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLG 318 (432)
Q Consensus 287 ~~GldGIEv~~~~---~~~~~~~~lA~~~gLl~tg 318 (432)
..++|++|+++.. .....+..+|+.+|+...+
T Consensus 528 ~~~IDTLelar~l~p~~k~~kL~~LAk~lGL~~~~ 562 (1437)
T PRK00448 528 NPVIDTLELSRFLYPELKSHRLNTLAKKFGVELEH 562 (1437)
T ss_pred ccceeHHHHHHHHcCccccccHHHHHHHcCCCCCC
Confidence 3467888886543 3456788899999997643
No 4
>TIGR00375 conserved hypothetical protein TIGR00375. The member of this family from Methanococcus jannaschii, MJ0043, is considerably longer and appears to contain an intein N-terminal to the region of homology.
Probab=99.68 E-value=5.4e-16 Score=158.47 Aligned_cols=180 Identities=19% Similarity=0.228 Sum_probs=122.6
Q ss_pred EcceeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHH----HhCCCe------EeeEEEEEEeec
Q 014031 75 FELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETA----RRFGMK------IIPGVEISTIFC 141 (432)
Q Consensus 75 vDLH~HT~~S---DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a----~~~gi~------vI~GiEis~~~~ 141 (432)
+|||+||.+| +..++|+.++++|...|++.||+|||++.. ..+.... .+.|+. +++|.|+.+.
T Consensus 2 aDLHIHs~~S~a~~~~m~~~~i~~~a~~KGldvIg~~D~~~p~--~~~~~~~~~~~~~~Gl~~~~ei~~~~~~ei~~~-- 77 (374)
T TIGR00375 2 ADLHIHIGRTRGAKTLTLDRILVEQSRLKGLELLGIIDCHSPL--EEGISSGKRELDGGGIRYRSELSIYDEACVDES-- 77 (374)
T ss_pred CccceecCcCCCCCccCCHHHHHHHHHhcCCEEEEEecCCCch--HHHHhhcccccCCCCeeeccceeeccccccccC--
Confidence 6999999998 777999999999999999999999999984 2222222 345776 8888887653
Q ss_pred CCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHH
Q 014031 142 QRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 221 (432)
Q Consensus 142 ~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aL 221 (432)
+++|+|+|+++. +...+|-+.+. .+|. .++||
T Consensus 78 -------~~VH~L~~fp~l-----~~a~~f~~~l~-----------~~l~-------------------~~~rp------ 109 (374)
T TIGR00375 78 -------GPIHVLLFMPTL-----ADMKQFSNWLS-----------ARLK-------------------NIGRS------ 109 (374)
T ss_pred -------CCceEEEECCCH-----HHHHHHHHHHH-----------hhCC-------------------CCCCC------
Confidence 689999999652 33332211111 0111 12222
Q ss_pred HHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCc-----HHHHHHHHHcCccEEEEe
Q 014031 222 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNP-----AAIIRKLKDVGLHGLEVY 296 (432)
Q Consensus 222 v~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~~~-----~~li~~L~~~GldGIEv~ 296 (432)
. ...++..+.++.++..||++|.||+|+.... +.+-..+. ...++||+.
T Consensus 110 ----------------------~---q~~~~~~~~~~~v~~~gGi~iPAHiftP~~Sl~g~~~~~~~~~g-~~p~avElg 163 (374)
T TIGR00375 110 ----------------------S---QRIYETGLNLEKVQDYGGLFGPAHIFTPWTSLYKSGDSSSDCYV-FDPDFVELG 163 (374)
T ss_pred ----------------------C---eeeecHHHHHHHhhcCCeEEEeCCCCCCcccccccccchhhhhc-CCCceEEEe
Confidence 0 0114677889999999999999999974321 11111111 123999999
Q ss_pred cCCCcHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCcccc
Q 014031 297 RSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSV 336 (432)
Q Consensus 297 ~~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~ 336 (432)
.+... .+...++...++..+.+||+|.+. +..||+-
T Consensus 164 lS~d~-~ma~~~s~L~~~~~ISnSDAHsl~---p~~IGre 199 (374)
T TIGR00375 164 LSADT-DMADHISELNDYPFLTNSDAHSLG---PHRLGRE 199 (374)
T ss_pred ccCCH-HHHHHhHHhcCCCeEeecCCCCCC---hhHhCCc
Confidence 98864 444588889999999999999974 1257754
No 5
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=99.66 E-value=2.6e-16 Score=122.86 Aligned_cols=64 Identities=44% Similarity=0.704 Sum_probs=61.9
Q ss_pred cceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEe
Q 014031 76 ELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTI 139 (432)
Q Consensus 76 DLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~ 139 (432)
|||+||.|| ||..+|++++++|+++|+++++||||+++.++.++++.+++.||++|||+|+++.
T Consensus 1 dlH~Ht~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~~~~ 66 (67)
T smart00481 1 DLHVHSDYSLLDGALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEANIV 66 (67)
T ss_pred CCccccCCccccccCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEEEec
Confidence 799999999 9999999999999999999999999999999999999999999999999999863
No 6
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=99.66 E-value=1.7e-15 Score=136.90 Aligned_cols=78 Identities=36% Similarity=0.666 Sum_probs=67.9
Q ss_pred EcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCcEE
Q 014031 75 FELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPVH 152 (432)
Q Consensus 75 vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~vH 152 (432)
||||+||.|| ||..+|++++++|++.|++.||||||+++.++..+.+.+++.||.+++|+|+..... ...+|
T Consensus 1 iDlH~HT~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~~~~~~------~~~~~ 74 (175)
T PF02811_consen 1 IDLHVHTKYSILDGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEIESFER------NDPFD 74 (175)
T ss_dssp EEEEB--TTTSSTSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEESHHHH------TTTEE
T ss_pred CCccccccCcchhhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEeeccccc------cchhH
Confidence 7999999999 999999999999999999999999999999999999999999999999999943222 45678
Q ss_pred EEEEec
Q 014031 153 ILAYYS 158 (432)
Q Consensus 153 iLgYg~ 158 (432)
++.+..
T Consensus 75 ~~i~~~ 80 (175)
T PF02811_consen 75 YIIGSV 80 (175)
T ss_dssp EEEEEG
T ss_pred HHHHHh
Confidence 777754
No 7
>PRK07328 histidinol-phosphatase; Provisional
Probab=99.66 E-value=1.4e-15 Score=149.64 Aligned_cols=185 Identities=23% Similarity=0.326 Sum_probs=116.6
Q ss_pred ceeEcceeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------C-------HHH----HHHHHHh-CCCe
Q 014031 72 NVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------G-------IPE----AIETARR-FGMK 129 (432)
Q Consensus 72 ~~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~---------g-------~~~----~~~~a~~-~gi~ 129 (432)
+|++|+|+||.+| ||..++++++++|.+.|++.++||||.... . +.+ +.++.++ .+|.
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~ 80 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLY 80 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCe
Confidence 4678999999999 999999999999999999999999996641 0 111 1122223 3799
Q ss_pred EeeEEEEEEeecCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC
Q 014031 130 IIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKG 209 (432)
Q Consensus 130 vI~GiEis~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~ 209 (432)
|+.|+|+....+ ..+.+.+++ +. .++|+
T Consensus 81 Il~GiE~~~~~~----------------------~~~~~~~~l------------------~~--~~~D~---------- 108 (269)
T PRK07328 81 VRLGIEADYHPG----------------------TEEFLERLL------------------EA--YPFDY---------- 108 (269)
T ss_pred EEEEEEecccCC----------------------cHHHHHHHH------------------Hh--CCCCe----------
Confidence 999999986421 011222221 11 11111
Q ss_pred CCCChHHHHHH-------HHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC-----C
Q 014031 210 VAPGRLHVARA-------MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----N 277 (432)
Q Consensus 210 ~~~gr~hia~a-------Lv~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~-----~ 277 (432)
.+|..|.... ..+.--..+..+++++|+ +.+++++. .|.+-|+|||...+ .
T Consensus 109 -vigSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~---------------~~~~~~~~-~~~~dvlgH~d~i~~~~~~~ 171 (269)
T PRK07328 109 -VIGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYF---------------ALVEQAAR-SGLFDIIGHPDLIKKFGHRP 171 (269)
T ss_pred -EEEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHH---------------HHHHHHHH-cCCCCEeeCccHHHHcCCCC
Confidence 1222222100 000000023345556665 24455554 68999999997432 1
Q ss_pred ---c----HHHHHHHHHcCccEEEEecCC--------CcHHHHHHHHHHcCCeeEeCCCCCCCC
Q 014031 278 ---P----AAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDLADTYGLLKLGGSDYHGRG 326 (432)
Q Consensus 278 ---~----~~li~~L~~~GldGIEv~~~~--------~~~~~~~~lA~~~gLl~tgGSDfHg~~ 326 (432)
. +++++.+++.| -++|+..+. .....+.++|.++|..+|-|||+|.+.
T Consensus 172 ~~~~~~~~~~il~~~~~~g-~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigSDAH~~~ 234 (269)
T PRK07328 172 REDLTELYEEALDVIAAAG-LALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGSDAHRPE 234 (269)
T ss_pred chhHHHHHHHHHHHHHHcC-CEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeCCCCCHH
Confidence 1 35667777778 579998742 134578899999999999999999974
No 8
>PRK08392 hypothetical protein; Provisional
Probab=99.65 E-value=1.4e-15 Score=144.87 Aligned_cols=174 Identities=17% Similarity=0.229 Sum_probs=113.7
Q ss_pred EcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC---CH----HHHHHHHHhCCCeEeeEEEEEEeecCCCCCC
Q 014031 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS---GI----PEAIETARRFGMKIIPGVEISTIFCQRGSES 147 (432)
Q Consensus 75 vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~---g~----~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~ 147 (432)
+|+|+||.+|||..++++++++|.+.|++.|+||||.... .+ .++.++.++.++.++.|+|++...+
T Consensus 1 ~D~H~HT~~sd~~~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~------ 74 (215)
T PRK08392 1 MDLHTHTVYSDGIGSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPN------ 74 (215)
T ss_pred CccccCCCCcCCcCCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCC------
Confidence 5999999999999999999999999999999999998652 22 2233333446899999999987532
Q ss_pred CCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCcc
Q 014031 148 EEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHV 227 (432)
Q Consensus 148 ~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~ 227 (432)
..+...++ +....+ .++..|.. .
T Consensus 75 ----------------~~~~~~~~------------------~~~~D~---------------vI~SvH~~--------~ 97 (215)
T PRK08392 75 ----------------GVDITDDF------------------AKKLDY---------------VIASVHEW--------F 97 (215)
T ss_pred ----------------cchhHHHH------------------HhhCCE---------------EEEEeecC--------c
Confidence 00111111 111111 23344420 0
Q ss_pred ccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC---------CcHHHHHHHHHcCccEEEEecC
Q 014031 228 ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK---------NPAAIIRKLKDVGLHGLEVYRS 298 (432)
Q Consensus 228 ~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~---------~~~~li~~L~~~GldGIEv~~~ 298 (432)
.. ..+..|+ ++.++++ +.+.+-|+|||+... ....+++.+++.| .++|+...
T Consensus 98 ~~--~~~~~Y~---------------~~~~~~~-~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g-~~lEiNt~ 158 (215)
T PRK08392 98 GR--PEHHEYI---------------ELVKLAL-MDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG-KAFEISSR 158 (215)
T ss_pred CC--cHHHHHH---------------HHHHHHH-hcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC-CEEEEeCC
Confidence 00 0122333 3444444 568999999996321 1134566667778 67999864
Q ss_pred C-CcHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccc
Q 014031 299 D-GKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS 335 (432)
Q Consensus 299 ~-~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~ 335 (432)
. .....+.++|.++|..+|-|||+|.+. .+|.
T Consensus 159 ~~~p~~~~l~~~~~~G~~~~igSDAH~~~-----~vg~ 191 (215)
T PRK08392 159 YRVPDLEFIRECIKRGIKLTFASDAHRPE-----DVGN 191 (215)
T ss_pred CCCCCHHHHHHHHHcCCEEEEeCCCCChH-----HCCc
Confidence 3 234567889999999999999999974 5774
No 9
>PRK05672 dnaE2 error-prone DNA polymerase; Validated
Probab=99.55 E-value=1.2e-13 Score=157.37 Aligned_cols=117 Identities=32% Similarity=0.462 Sum_probs=93.0
Q ss_pred eeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
.++|||+||.|| ||.++|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++.+.. .+..
T Consensus 4 ~fv~LHvHT~ySlLdg~~~~~elv~~A~~~G~~avAiTDh~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~----~~~~ 79 (1046)
T PRK05672 4 PYAELHCHSNFSFLDGASHPEELVERAARLGLRALAITDECGLAGVVRAAEAAKELGLRLVIGAELSLGPDP----DPGG 79 (1046)
T ss_pred ceeeccccccCcccccCCCHHHHHHHHHHcCCCEEEEEeCCcchhHHHHHHHHHHCCCEEEEEEEEEEecCC----CCCC
Confidence 479999999999 9999999999999999999999999999999999999999999999999999986421 1346
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q 014031 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIA 206 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~ 206 (432)
+|+++|..+ +.++..|.++.+..+ .++. ..+..++++++.+..
T Consensus 80 ~hllllAkn--~~Gy~nL~kL~S~a~---~~~~--------~~~p~i~~e~L~~~~ 122 (1046)
T PRK05672 80 PHLLVLARD--REGYGRLSRLITRAR---LRAG--------KGEYRLDLDDLAEPA 122 (1046)
T ss_pred ceEEEEEcC--hHHHHHHHHHHHHHH---HhCC--------CCCccccHHHHHhhc
Confidence 899999975 334444544443332 2211 345678999887764
No 10
>PRK08123 histidinol-phosphatase; Reviewed
Probab=99.53 E-value=2.3e-13 Score=134.06 Aligned_cols=68 Identities=24% Similarity=0.317 Sum_probs=52.1
Q ss_pred ceeEcceeeCcCC-CCC-CCHHHHHHHHHHcCCcEEEEecCCCCCC-----------------HH----HHHHHHHh--C
Q 014031 72 NVVFELHSHSNFS-DGY-LSPSKLVERAHCNGVKVLALTDHDTMSG-----------------IP----EAIETARR--F 126 (432)
Q Consensus 72 ~~~vDLH~HT~~S-DG~-~sp~elv~~A~~~Gl~~iaITDHdt~~g-----------------~~----~~~~~a~~--~ 126 (432)
+|++|+|+||.+| ||. .+++++++.|.+.|++.|+||||..... +. ++.++.++ .
T Consensus 1 ~m~~D~H~HT~~s~h~~~~~~e~~v~~Ai~~Gl~~i~~tdH~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~ky~~ 80 (270)
T PRK08123 1 MMKRDGHTHTPFCPHGSKDDLEAYIERAIELGFTEITFTEHAPLPPGFIDPTPRQDSAMAIEQLERYLKELNELKKKYAG 80 (270)
T ss_pred CCccccccCCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeccCCCccccCCcccCcccccCHHHHHHHHHHHHHHHHHccC
Confidence 3578999999999 775 6899999999999999999999965421 11 12222233 2
Q ss_pred CCeEeeEEEEEEe
Q 014031 127 GMKIIPGVEISTI 139 (432)
Q Consensus 127 gi~vI~GiEis~~ 139 (432)
+|.|+.|+|+...
T Consensus 81 ~i~i~~GiE~~~~ 93 (270)
T PRK08123 81 QIDIRIGLEVDYI 93 (270)
T ss_pred CCeEEEEEEeecc
Confidence 6999999999864
No 11
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=99.53 E-value=1.1e-13 Score=135.01 Aligned_cols=181 Identities=26% Similarity=0.316 Sum_probs=112.9
Q ss_pred EcceeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC-----C----------HH----HHHHHHHh--CCCeEee
Q 014031 75 FELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS-----G----------IP----EAIETARR--FGMKIIP 132 (432)
Q Consensus 75 vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~-----g----------~~----~~~~~a~~--~gi~vI~ 132 (432)
+|+|+||.+| ||..++++++++|++.|++.|+||||..+. . ++ ++.++.++ .+|.|+.
T Consensus 1 ~D~H~Ht~~s~d~~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~ 80 (253)
T TIGR01856 1 RDGHSHSPFCAHGTDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILI 80 (253)
T ss_pred CCcccCcCCCCCCCCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 4899999999 999999999999999999999999997631 0 11 12222233 3799999
Q ss_pred EEEEEEeecCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCC
Q 014031 133 GVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAP 212 (432)
Q Consensus 133 GiEis~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~ 212 (432)
|+|+....+ ..+.+.+++ ...+ +|+ .+
T Consensus 81 GiE~~~~~~----------------------~~~~~~~~l------------------~~~~--~D~-----------vi 107 (253)
T TIGR01856 81 GLEVDYIPG----------------------FEDFTKDFL------------------DEYG--LDF-----------VI 107 (253)
T ss_pred EEEeccccc----------------------hHHHHHHHH------------------HHCC--CCe-----------EE
Confidence 999986421 011222111 1111 111 11
Q ss_pred ChHHHHH-------------HHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC---
Q 014031 213 GRLHVAR-------------AMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK--- 276 (432)
Q Consensus 213 gr~hia~-------------aLv~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~--- 276 (432)
|..|... .+...+ .+..+.+.+|+ +.+.+++....-.-|+|||...+
T Consensus 108 gSvH~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~Y~---------------~~~~~~i~~~~~~dvlgH~Dli~~~~ 170 (253)
T TIGR01856 108 GSVHFLGGIPIDFDAEEFNEGLVSFY--GNLEQAQRDYF---------------ESVYDSIQALFKPLVIGHIDLVQKFG 170 (253)
T ss_pred EEEEeecCCCCCCCHHHHHHHHHHcC--CCHHHHHHHHH---------------HHHHHHHHcCCCCCCcccHhHHHHhC
Confidence 2222110 011111 24455566665 34555666643357999996321
Q ss_pred -C--------------cHHHHHHHHHcCccEEEEecCC--------CcHHHHHHHHHHcCCeeEeCCCCCCCC
Q 014031 277 -N--------------PAAIIRKLKDVGLHGLEVYRSD--------GKLVAYTDLADTYGLLKLGGSDYHGRG 326 (432)
Q Consensus 277 -~--------------~~~li~~L~~~GldGIEv~~~~--------~~~~~~~~lA~~~gLl~tgGSDfHg~~ 326 (432)
. .+.+++.+++.| .+||+..+. .....+.++|.++|..+|-|||+|.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~il~~~~~~g-~~lEiNt~g~r~~~~~~yP~~~il~~~~~~g~~itlgSDAH~~~ 242 (253)
T TIGR01856 171 PLFTDVSSFSDEVYELLQRILKLVASQG-KALEFNTSGLRKPLEEAYPSKELLNLAKELGIPLVLGSDAHGPG 242 (253)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHcC-CEEEEEcHhhcCCCCCCCCCHHHHHHHHHcCCCEEecCCCCCHH
Confidence 1 134566677777 579998753 134678899999999999999999974
No 12
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=99.52 E-value=3e-13 Score=151.81 Aligned_cols=97 Identities=31% Similarity=0.406 Sum_probs=78.5
Q ss_pred eeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCC-CCCC
Q 014031 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-ESEE 149 (432)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~-~~~~ 149 (432)
.++|||+||.|| ||..+|++++++|++.|+++|||||||++.|..++.++|++.||++|+|+|+++.++.... ....
T Consensus 2 ~Fv~LH~HS~ySlLdg~~~~~elv~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~ 81 (874)
T PRK09532 2 SFVGLHIHSDYSLLDGASQLPALVDRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRR 81 (874)
T ss_pred CccccccCCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccc
Confidence 478999999999 9999999999999999999999999999999999999999999999999999986432100 0123
Q ss_pred cEEEEEEeccCCCCchHHHHHH
Q 014031 150 PVHILAYYSSCGPSKYEELENF 171 (432)
Q Consensus 150 ~vHiLgYg~d~g~~~~~~L~~~ 171 (432)
..|++.|..+ ..++..|.++
T Consensus 82 ~~~lvLLAkN--~~GY~NL~kL 101 (874)
T PRK09532 82 KYHQVVLAKN--TQGYKNLVKL 101 (874)
T ss_pred cceeEEEecC--HHHHHHHHHH
Confidence 4688888754 2344555443
No 13
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=99.50 E-value=2.9e-13 Score=130.81 Aligned_cols=162 Identities=20% Similarity=0.261 Sum_probs=107.3
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCC-HHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSG-IPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g-~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
+|.+|||+||. +||..+++++++.|.+.|++.||||||..... .....+ .-.+|.++.|+|+....
T Consensus 1 ~m~~DlHvHt~-~d~~~~~~e~i~~A~~~Gl~~i~itdH~~~~~~~~~~~~--~~~~i~Il~GiEi~~~~---------- 67 (237)
T PRK00912 1 MKFYDLNVHAV-PDGYDTVLRLISEASHLGYSGIALSNHSDKYPESKPELE--DLLGFEIFRGVEIVASN---------- 67 (237)
T ss_pred CCceEeccCCC-CCCcchHHHHHHHHHHCCCCEEEEecCcccccchhHHHH--HhcCCcEEeeEEEecCC----------
Confidence 46789999994 79999999999999999999999999987532 111111 11289999999996431
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 014031 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~~~ 230 (432)
...+..++...++ .+
T Consensus 68 --------------~~~~~~~~~~~~~----------------~~----------------------------------- 82 (237)
T PRK00912 68 --------------PSKLRGLVGKFRK----------------KV----------------------------------- 82 (237)
T ss_pred --------------HHHHHHHHHhccC----------------cc-----------------------------------
Confidence 1223222111000 00
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC----CcHHHHHHHHHcCccEEEEecCC-----C-
Q 014031 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK----NPAAIIRKLKDVGLHGLEVYRSD-----G- 300 (432)
Q Consensus 231 ~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~----~~~~li~~L~~~GldGIEv~~~~-----~- 300 (432)
+|+. +. +..+++...+...+++.|++||+..+ ....+++..++.| -++|+..+. .
T Consensus 83 -----d~v~------v~---~~~~~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~g-v~lEIn~s~~~~~~~~ 147 (237)
T PRK00912 83 -----DVLA------VH---GGDEKVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNN-VAIEFNLRDILKSRGG 147 (237)
T ss_pred -----cEEE------Ee---CCCHHHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCC-eEEEEEchHhhhhccc
Confidence 0000 00 12234445677899999999997532 1245666677777 468987753 1
Q ss_pred -------cHHHHHHHHHHcCCeeEeCCCCCCCC
Q 014031 301 -------KLVAYTDLADTYGLLKLGGSDYHGRG 326 (432)
Q Consensus 301 -------~~~~~~~lA~~~gLl~tgGSDfHg~~ 326 (432)
....+.++|+++|+.++.|||+|.+.
T Consensus 148 ~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~ 180 (237)
T PRK00912 148 RRARTLSNFRDNLALARKYDFPLVLTSGAMSCY 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccc
Confidence 11357789999999999999999974
No 14
>PRK07945 hypothetical protein; Provisional
Probab=99.49 E-value=3.2e-13 Score=137.11 Aligned_cols=174 Identities=21% Similarity=0.253 Sum_probs=113.5
Q ss_pred CceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC----C--HHH-------HHHHHHh-CCCeEeeEEEE
Q 014031 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS----G--IPE-------AIETARR-FGMKIIPGVEI 136 (432)
Q Consensus 71 ~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~----g--~~~-------~~~~a~~-~gi~vI~GiEi 136 (432)
.++++|+|+||.||||..++++++++|.+.|++.||||||.... + ... +.++.++ .+|.|+.|+|+
T Consensus 94 ~~~~~D~H~HT~~Sdg~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~ 173 (335)
T PRK07945 94 AALRGDLHTHSDWSDGGSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEV 173 (335)
T ss_pred HHHhhhcccccCCCCCCCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEe
Confidence 36899999999999999999999999999999999999996542 1 111 1122222 37999999999
Q ss_pred EEeecCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHH
Q 014031 137 STIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLH 216 (432)
Q Consensus 137 s~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~h 216 (432)
..... +. .+...+++ .. +|+ .++..|
T Consensus 174 d~~~~-------------------g~--~~~~~~~l------------------~~----~D~-----------vIgSvH 199 (335)
T PRK07945 174 DILDD-------------------GS--LDQEPELL------------------DR----LDV-----------VVASVH 199 (335)
T ss_pred cccCC-------------------CC--cchhHHHH------------------Hh----CCE-----------EEEEee
Confidence 87531 00 01111111 11 111 233444
Q ss_pred HHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC-------------CcHHHHH
Q 014031 217 VARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-------------NPAAIIR 283 (432)
Q Consensus 217 ia~aLv~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~-------------~~~~li~ 283 (432)
... ..+.. .| .+.+++.+. .+.+-|++||.... ...++++
T Consensus 200 ~~~-------~~~~~----~~---------------~~~l~~ai~-~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~ 252 (335)
T PRK07945 200 SKL-------RMDAA----AM---------------TRRMLAAVA-NPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFA 252 (335)
T ss_pred cCC-------CCCHH----HH---------------HHHHHHHhc-CCCCeEEecCchhhhccccCCCChhhcCHHHHHH
Confidence 210 00000 01 134455555 67899999995110 1146777
Q ss_pred HHHHcCccEEEEecCC---CcHHHHHHHHHHcCCeeEeCCCCCCCC
Q 014031 284 KLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDYHGRG 326 (432)
Q Consensus 284 ~L~~~GldGIEv~~~~---~~~~~~~~lA~~~gLl~tgGSDfHg~~ 326 (432)
.+++.| .+||+..+. .....+.++|.++|..+|-|||+|.+.
T Consensus 253 a~~e~g-~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSDAH~p~ 297 (335)
T PRK07945 253 ACREHG-TAVEINSRPERRDPPTRLLRLALDAGCLFSIDTDAHAPG 297 (335)
T ss_pred HHHHhC-CEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCCCCChh
Confidence 778888 579998754 356678899999999999999999974
No 15
>PRK06361 hypothetical protein; Provisional
Probab=99.48 E-value=1.1e-12 Score=124.30 Aligned_cols=162 Identities=25% Similarity=0.344 Sum_probs=103.8
Q ss_pred eeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHH--------HHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 79 SHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAI--------ETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 79 ~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~--------~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
+||.||||..+|+++++.|.+.|++.||||||+...+...+. ++.+..+|.+++|+|++....
T Consensus 1 ~Ht~~sdg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~GiE~~~~~~--------- 71 (212)
T PRK06361 1 THTIFSDGELIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEVIPGVELTHVPP--------- 71 (212)
T ss_pred CCccccCCCCCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEEEcccCc---------
Confidence 699999999999999999999999999999999876543322 122235899999999985321
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccH
Q 014031 151 VHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENL 230 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~~~ 230 (432)
..+.. +++.+...++.+- -.| |..
T Consensus 72 ---------------~~~~~---------------~~~~~~~~~~~~~---------------svH--------~~~--- 95 (212)
T PRK06361 72 ---------------KLIPK---------------LAKKARDLGAEIV---------------VVH--------GET--- 95 (212)
T ss_pred ---------------hhhch---------------HHHHHHHCCCEEE---------------EEC--------CCC---
Confidence 00111 1111222222211 001 000
Q ss_pred HHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCC---cHHHHHH
Q 014031 231 KQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG---KLVAYTD 307 (432)
Q Consensus 231 ~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~---~~~~~~~ 307 (432)
.+.+ ......++ +.+.|-+-|+|||.... ..+++.+++.| ..+|+..+.. ....+.+
T Consensus 96 -------------~~~~---~~~~~~~~-a~~~~~~dvlaHpd~~~--~~~~~~~~~~~-~~lEin~~~~~~~~~~~~l~ 155 (212)
T PRK06361 96 -------------IVEP---VEEGTNLA-AIECEDVDILAHPGLIT--EEEAELAAENG-VFLEITARKGHSLTNGHVAR 155 (212)
T ss_pred -------------cchh---hhhhhHHH-HHhCCCCcEecCcchhh--HHHHHHHHHcC-eEEEEECCCCcccchHHHHH
Confidence 0000 00011133 33678899999997543 34666676666 6799986432 3567889
Q ss_pred HHHHcCCeeEeCCCCCCC
Q 014031 308 LADTYGLLKLGGSDYHGR 325 (432)
Q Consensus 308 lA~~~gLl~tgGSDfHg~ 325 (432)
+|+++|+.++.|||+|.+
T Consensus 156 ~a~~~gi~vv~~SDaH~~ 173 (212)
T PRK06361 156 IAREAGAPLVINTDTHAP 173 (212)
T ss_pred HHHHhCCcEEEECCCCCH
Confidence 999999999999999964
No 16
>PRK05588 histidinol-phosphatase; Provisional
Probab=99.47 E-value=4.2e-13 Score=130.89 Aligned_cols=183 Identities=19% Similarity=0.287 Sum_probs=112.3
Q ss_pred eEcceeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCC---------CHHHHHHHHHhC-CCeEeeEEEEEEeecC
Q 014031 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMS---------GIPEAIETARRF-GMKIIPGVEISTIFCQ 142 (432)
Q Consensus 74 ~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~---------g~~~~~~~a~~~-gi~vI~GiEis~~~~~ 142 (432)
++|+|+||.+| ||..++++++++|.++|++.+ ||||-.+. .++...+..++. ++.|+.|+|+....+
T Consensus 1 ~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~~~~- 78 (255)
T PRK05588 1 MFDTHIHTEFSTDSKMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGMEKD- 78 (255)
T ss_pred CeeecccCCCCCCcccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecccCC-
Confidence 47999999999 999999999999999999988 99996331 122323222333 689999999975321
Q ss_pred CCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHH--
Q 014031 143 RGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA-- 220 (432)
Q Consensus 143 ~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~a-- 220 (432)
..+.++++ |... ++|+ .+|..|...-
T Consensus 79 ---------------------~~~~~~~~------------------l~~~--~~D~-----------vigSvH~~~~~~ 106 (255)
T PRK05588 79 ---------------------LIEENKEL------------------INKY--EFDY-----------VIGSIHLVDKLD 106 (255)
T ss_pred ---------------------CHHHHHHH------------------HhhC--CCCe-----------EEEeEEeeCCCc
Confidence 11222222 1221 1221 1233332110
Q ss_pred HHHcCcc--ccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC------C-------c----HHH
Q 014031 221 MVEAGHV--ENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK------N-------P----AAI 281 (432)
Q Consensus 221 Lv~~G~~--~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~------~-------~----~~l 281 (432)
.....+. .+..++++.|+ +.+++++...+.+-|+|||...+ . . .++
T Consensus 107 ~~~~~~~~~~~~~~~~~~Y~---------------~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~~~~~~~~~~i 171 (255)
T PRK05588 107 LYLDEFYKDKSKEEAYHIYF---------------ENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYYDEFKEIIDEI 171 (255)
T ss_pred chHHHHhcCCCHHHHHHHHH---------------HHHHHHHHhcCCCCCccCHhHHHHcCccccccccHHHHHHHHHHH
Confidence 0000000 23445556665 35566666678899999997321 0 1 345
Q ss_pred HHHHHHcCccEEEEecCCC-------cHHHHHHHHHHcCCe-eEeCCCCCCCC
Q 014031 282 IRKLKDVGLHGLEVYRSDG-------KLVAYTDLADTYGLL-KLGGSDYHGRG 326 (432)
Q Consensus 282 i~~L~~~GldGIEv~~~~~-------~~~~~~~lA~~~gLl-~tgGSDfHg~~ 326 (432)
++.+++.| -++|+..+.- ....+...+.+.|.. +|-|||+|.+.
T Consensus 172 l~~~~~~g-~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lgSDAH~~~ 223 (255)
T PRK05588 172 LKVLIEKE-KVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLGSDAHNIE 223 (255)
T ss_pred HHHHHHcC-CEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEECCCCCHH
Confidence 56667777 5699987431 234567778888876 79999999974
No 17
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=99.45 E-value=1.9e-13 Score=154.01 Aligned_cols=89 Identities=26% Similarity=0.416 Sum_probs=79.1
Q ss_pred eEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCcE
Q 014031 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEPV 151 (432)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~v 151 (432)
++|||+||.|| ||.++|++++++|++.|++++||||||++.|+.++.++|++.||++|+|+|+++.+ ..+
T Consensus 3 fv~LHvHS~ySlLDg~~~~~elv~~Ak~~G~~avAITDh~~l~G~~~f~~~a~~~gIkpIiG~Ei~~~~--------~~l 74 (973)
T PRK07135 3 LINLHTNTEYSFLSSTIKLDSLIKYAKENNLKTLVLTDHNNMFGVPKFYKLCKKNNIKPIIGLDLEVEN--------FRF 74 (973)
T ss_pred ccccccCccCcccccCCCHHHHHHHHHHcCCCEEEEecCCcHHhHHHHHHHHHHcCCeEEEeEEEEecC--------cEE
Confidence 68999999999 99999999999999999999999999999999999999999999999999998752 468
Q ss_pred EEEEEeccCCCCchHHHHHHHHH
Q 014031 152 HILAYYSSCGPSKYEELENFLAN 174 (432)
Q Consensus 152 HiLgYg~d~g~~~~~~L~~~l~~ 174 (432)
|+||.+. .++..|.++.+.
T Consensus 75 ~LLAkn~----~GY~nL~kL~S~ 93 (973)
T PRK07135 75 ILLAKNY----SGYKLLNELSSK 93 (973)
T ss_pred EEEECCH----HHHHHHHHHHHH
Confidence 8888753 367777776654
No 18
>PRK08609 hypothetical protein; Provisional
Probab=99.43 E-value=2.5e-12 Score=138.96 Aligned_cols=208 Identities=17% Similarity=0.233 Sum_probs=124.0
Q ss_pred Hhhhhccccc-cceecccccCCCCCCCCccccc-ccccCCCCceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEec
Q 014031 32 EQSLAFNSVT-EWVYLDQSHSSSSSEDDFGVHQ-ILNRAVDNNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD 109 (432)
Q Consensus 32 ~~~~a~~~~~-~W~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITD 109 (432)
++..-|+..+ .|+.|-.+ ....++.+.. +|.=-...-+++|+||||.+|||..+++++++.|++.|++.|+|||
T Consensus 295 ~E~~iy~~Lgl~yipPelR----e~~ge~~~a~~lp~lv~~~d~~~DlH~HT~~sDg~~sleemv~~A~~~Gl~~i~iTd 370 (570)
T PRK08609 295 SEEAFFAHFGLPFIPPEVR----EDGSEFERYKDLSNLITLSDIQGDLHMHTTWSDGAFSIEEMVEACIAKGYEYMAITD 370 (570)
T ss_pred CHHHHHHHcCCCCCCcccc----CCccHHHHHhhchhhhhhHhhcCCccccCCCCCCCCCHHHHHHHHHHCCCCEEEEeC
Confidence 3444554444 78887765 2223332211 1100013347799999999999999999999999999999999999
Q ss_pred CCCCC----C--HHH-------HHHHHHh-CCCeEeeEEEEEEeecCCCCCCCCcEEEEEEeccCCCCchHHH-HHHHHH
Q 014031 110 HDTMS----G--IPE-------AIETARR-FGMKIIPGVEISTIFCQRGSESEEPVHILAYYSSCGPSKYEEL-ENFLAN 174 (432)
Q Consensus 110 Hdt~~----g--~~~-------~~~~a~~-~gi~vI~GiEis~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L-~~~l~~ 174 (432)
|.... + ..+ +.++.++ .+|.++.|+|+...... . .++ ..+
T Consensus 371 H~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~~g-------~---------------~d~~~~~--- 425 (570)
T PRK08609 371 HSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILPDG-------S---------------LDYDDEV--- 425 (570)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecCCc-------c---------------hhhcHHH---
Confidence 97431 1 111 1222222 37999999999975320 0 011 001
Q ss_pred HHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccccHHHHHHHHhhCCCCcccCCCCCCHH
Q 014031 175 IRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAE 254 (432)
Q Consensus 175 ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~e 254 (432)
|+...+ .++..|.. +..+..+ ..
T Consensus 426 ---------------L~~~D~---------------vI~SvH~~-------~~~~~~~--------------------~~ 448 (570)
T PRK08609 426 ---------------LAELDY---------------VIAAIHSS-------FSQSEEE--------------------IM 448 (570)
T ss_pred ---------------HHhhCE---------------EEEEeecC-------CCCCHHH--------------------HH
Confidence 011111 12222210 0000011 11
Q ss_pred HHHHHHHHcCCEEEEeCCCC-----CCC----cHHHHHHHHHcCccEEEEecCC---CcHHHHHHHHHHcCCeeEeCCCC
Q 014031 255 VAVQLIHRTGGLAVLAHPWA-----LKN----PAAIIRKLKDVGLHGLEVYRSD---GKLVAYTDLADTYGLLKLGGSDY 322 (432)
Q Consensus 255 eaI~~I~~aGGi~VLAHP~~-----~~~----~~~li~~L~~~GldGIEv~~~~---~~~~~~~~lA~~~gLl~tgGSDf 322 (432)
+.+..+...|.+.|+|||.. +.. .+.+++.+++.| -.+|+..+. .....+.+.|.++|+.++-|||+
T Consensus 449 ~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSDA 527 (570)
T PRK08609 449 KRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TALELNANPNRLDLSAEHLKKAQEAGVKLAINTDA 527 (570)
T ss_pred HHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEEEEcCCccccCccHHHHHHHHHcCCEEEEECCC
Confidence 22333335789999999983 111 245566667778 569998754 24567888999999999999999
Q ss_pred CCCC
Q 014031 323 HGRG 326 (432)
Q Consensus 323 Hg~~ 326 (432)
|.+.
T Consensus 528 H~~~ 531 (570)
T PRK08609 528 HHTE 531 (570)
T ss_pred CChh
Confidence 9974
No 19
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=99.42 E-value=3.8e-12 Score=123.44 Aligned_cols=180 Identities=26% Similarity=0.396 Sum_probs=117.4
Q ss_pred eeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC---CCH--------HHHHHHHHhCCCeEeeEEEEEEeec
Q 014031 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTM---SGI--------PEAIETARRFGMKIIPGVEISTIFC 141 (432)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~---~g~--------~~~~~~a~~~gi~vI~GiEis~~~~ 141 (432)
+++|+|+||.||||..+|.+++++|.+.|+..++||||-.. ... .++.+..+..+|.|+.|+|++....
T Consensus 1 ~~~D~H~HT~~sdg~~~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~~~~~ 80 (237)
T COG1387 1 MKIDLHTHTVFSDGEATPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVDILPD 80 (237)
T ss_pred CCcccccCcccccCCCCHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEEecCC
Confidence 46899999999999999999999999999999999999766 211 1233344456799999999998643
Q ss_pred CCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHH
Q 014031 142 QRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAM 221 (432)
Q Consensus 142 ~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aL 221 (432)
..+... +.+ +.+.++ .++..|-..
T Consensus 81 -------~~~d~~-----------~~~---------------------~~~lD~---------------vi~svH~~~-- 104 (237)
T COG1387 81 -------GSLDFL-----------DEI---------------------LKELDY---------------VIASVHELN-- 104 (237)
T ss_pred -------CCcccc-----------hhh---------------------HhhcCE---------------EEEEeccCC--
Confidence 110000 000 001111 011111000
Q ss_pred HHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCC-----------CcHHHHHHHHHcCc
Q 014031 222 VEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALK-----------NPAAIIRKLKDVGL 290 (432)
Q Consensus 222 v~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~-----------~~~~li~~L~~~Gl 290 (432)
.-+.......+.+...-..+-+-|+|||+-.. ....+++.+.+.|
T Consensus 105 -----------------------~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g- 160 (237)
T COG1387 105 -----------------------FEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG- 160 (237)
T ss_pred -----------------------ccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-
Confidence 00011123346666677778889999997521 1134555556666
Q ss_pred cEEEEecCCC---cHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccccc
Q 014031 291 HGLEVYRSDG---KLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK 337 (432)
Q Consensus 291 dGIEv~~~~~---~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~ 337 (432)
-++|+..+.+ ....+..+|+++|+.++-|||+|.+. .+|.+.
T Consensus 161 ~aleins~~~~~~~~~~~~~~~~e~G~~~~i~tDaH~~~-----~lg~~~ 205 (237)
T COG1387 161 KALEINSRPGRLDPNSEILRLARELGVKLAIGTDAHRPG-----DLGDMY 205 (237)
T ss_pred cEEeecCCcCccCchHHHHHHHHHhCCeEEeecCcCChh-----hcccch
Confidence 5789988742 45678889999999999999999984 577664
No 20
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.42 E-value=3.4e-12 Score=146.62 Aligned_cols=97 Identities=29% Similarity=0.358 Sum_probs=78.8
Q ss_pred eEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCC-C-CCCCC
Q 014031 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G-SESEE 149 (432)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~-~-~~~~~ 149 (432)
+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++.++.. + ...+.
T Consensus 2 fv~LHvHS~ySlLdg~~~i~elv~~A~e~G~~avAiTDH~~l~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~~~~ 81 (1135)
T PRK05673 2 FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPIIGCEAYVAPEKKDDVSGGGA 81 (1135)
T ss_pred cccceecccCchhhhcCCHHHHHHHHHHcCCCEEEEEcCCccHHHHHHHHHHHHcCCeEEEEEEEEecCCcccccccccC
Confidence 57999999999 99999999999999999999999999999999999999999999999999999975411 0 00122
Q ss_pred cEEEEEEeccCCCCchHHHHHHH
Q 014031 150 PVHILAYYSSCGPSKYEELENFL 172 (432)
Q Consensus 150 ~vHiLgYg~d~g~~~~~~L~~~l 172 (432)
..|++.|..+ ..++..|.++.
T Consensus 82 ~~~l~llAkn--~~Gy~nL~kL~ 102 (1135)
T PRK05673 82 YTHLTLLAKN--ETGYRNLFKLS 102 (1135)
T ss_pred CCceEEEecC--HHHHHHHHHHH
Confidence 4588888754 33455555443
No 21
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.31 E-value=3e-11 Score=138.17 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=78.5
Q ss_pred eeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
.++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|.++|++.||++|.|+|+...... ....
T Consensus 2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~----~~~~ 77 (1107)
T PRK06920 2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE----EEKS 77 (1107)
T ss_pred CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC----CCCc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999985321 0123
Q ss_pred EEEEEEeccCCCCchHHHHHHH
Q 014031 151 VHILAYYSSCGPSKYEELENFL 172 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l 172 (432)
.|++.|..+ ..++..|.++.
T Consensus 78 ~~l~LLAkn--~~Gy~nL~kL~ 97 (1107)
T PRK06920 78 YPLVLLAEN--EIGYQNLLKIS 97 (1107)
T ss_pred ccEEEEeCC--HHHHHHHHHHH
Confidence 588888754 34555555543
No 22
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=99.31 E-value=4.2e-12 Score=146.31 Aligned_cols=73 Identities=34% Similarity=0.457 Sum_probs=68.7
Q ss_pred CCCceeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeec
Q 014031 69 VDNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (432)
Q Consensus 69 ~~~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~ 141 (432)
....+++|||+||.+| ||.++|++++++|+++|+++||||||+++.+++++.+++++.||++|+|+|+++.+.
T Consensus 99 ~~~~krvDLH~HT~~S~~Dg~~~~~elv~~A~~~Gl~aiAITDH~~~~~~~~~~~~~~~~~ikvI~GvE~~~~~d 173 (1213)
T TIGR01405 99 NAKEKRVELHFHTKMSQMDAITSVQEYVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKDGIKIIYGMEANLVDD 173 (1213)
T ss_pred CCccceEEeeeCccCcccccCCCHHHHHHHHHHCCCCEEEEecCCCccCHHHHHHHHHhcCCEEEEEEEEEeecc
Confidence 3557899999999999 999999999999999999999999999999999999999999999999999998654
No 23
>PRK07329 hypothetical protein; Provisional
Probab=99.31 E-value=1.2e-11 Score=120.31 Aligned_cols=180 Identities=19% Similarity=0.195 Sum_probs=106.7
Q ss_pred eEcceeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCC-----------CCHHHH----HHHHHhCCCeEeeEEEEE
Q 014031 74 VFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTM-----------SGIPEA----IETARRFGMKIIPGVEIS 137 (432)
Q Consensus 74 ~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~-----------~g~~~~----~~~a~~~gi~vI~GiEis 137 (432)
+.|+|+||.+| ||..++++++++|. +.|+||||..+ ..+++. .++.++.+..|+.|+|+.
T Consensus 1 ~~D~H~Ht~~s~d~~~~~ee~~~~A~----~~i~~TdH~~~~~~~~~~~~~~~~~~~Y~~ei~~lk~ky~~~I~~GlE~~ 76 (246)
T PRK07329 1 IRDQHLHTHFSFDSDAKFEDYLTHFD----GEIVTTEHLDLSNPYDTGQDDVPDYAKYSAEIAELNEKYGNRIKKGIEIG 76 (246)
T ss_pred CcccccCCCCCCCCcchHHHHHHHhc----cCeEEecccCCCCCcccccccccCHHHHHHHHHHHHHHhhhhceEEEEeC
Confidence 36999999999 99999999999995 79999999543 112222 223344567899999998
Q ss_pred EeecCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHH
Q 014031 138 TIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHV 217 (432)
Q Consensus 138 ~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hi 217 (432)
.... ....+.++ |.. +++|+ .+|..|.
T Consensus 77 ~~~~----------------------~~~~~~~~------------------l~~--~~~Dy-----------vIgSvH~ 103 (246)
T PRK07329 77 YFAP----------------------REDDILDF------------------LAN--KDFDL-----------KLLSVHH 103 (246)
T ss_pred cccc----------------------cHHHHHHH------------------hcc--CCCCe-----------EEEEEEE
Confidence 6421 01122211 111 12221 2333343
Q ss_pred HHH--HHHcC-ccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCC-C-------Cc-------H
Q 014031 218 ARA--MVEAG-HVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL-K-------NP-------A 279 (432)
Q Consensus 218 a~a--Lv~~G-~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~-~-------~~-------~ 279 (432)
..- ..... .-.+..+.++.|+ +++++.+...|-+-|+|||... + .. +
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~Y~---------------~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~~~~~~~~~ 168 (246)
T PRK07329 104 NGVYDYLDDEVADMDKKELLQEYF---------------EKMEEAIGRVHDADVLAHFDYGLRLFDLTVEELKAFEPQLT 168 (246)
T ss_pred cCCCCCccHHHhcCCHHHHHHHHH---------------HHHHHHHHccCCCCEeeeccHHHHhCCCCCcChHHHHHHHH
Confidence 210 00000 0012233444454 3555666655688999999731 1 10 2
Q ss_pred HHHHHHHHcCccEEEEecCCC-------cHHHHHHHHHHcCCe-eEeCCCCCCCC
Q 014031 280 AIIRKLKDVGLHGLEVYRSDG-------KLVAYTDLADTYGLL-KLGGSDYHGRG 326 (432)
Q Consensus 280 ~li~~L~~~GldGIEv~~~~~-------~~~~~~~lA~~~gLl-~tgGSDfHg~~ 326 (432)
.+++.+++.| ..+|+..+.. ....+.++|.++|.. +|-|||+|.+.
T Consensus 169 ~i~~~~~~~~-~~lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~ 222 (246)
T PRK07329 169 RIFAKMIDND-LAFELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLE 222 (246)
T ss_pred HHHHHHHHcC-CeEEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHH
Confidence 4556677777 5699987521 124457889999975 89999999974
No 24
>PRK06826 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.29 E-value=1.1e-11 Score=142.39 Aligned_cols=101 Identities=28% Similarity=0.440 Sum_probs=81.8
Q ss_pred CceeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCC-C-
Q 014031 71 NNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS-E- 146 (432)
Q Consensus 71 ~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~-~- 146 (432)
|++++|||+||.|| ||..+|++++++|++.|+++||||||+++.|+.++.++|++.||++|+|+|+.+....... .
T Consensus 2 mm~fvdLHvHT~yS~ldg~~~~~elv~~A~e~G~~avAITDH~~~~g~~~f~~~a~~~gIkpIiG~Ei~~~~~~~~~~~~ 81 (1151)
T PRK06826 2 KMSFVHLHVHTEYSLLDGSARIKDLIKRAKELGMDSIAITDHGVMYGVVDFYKAAKKQGIKPIIGCEVYVAPRSRFDKEP 81 (1151)
T ss_pred CCcceeccccccCChhhhcCCHHHHHHHHHHCCCCEEEEecCCchHhHHHHHHHHHhCCCEEEEEEEEEecCCccccccc
Confidence 45589999999999 9999999999999999999999999999999999999999999999999999986431100 0
Q ss_pred --CCCcEEEEEEeccCCCCchHHHHHHHH
Q 014031 147 --SEEPVHILAYYSSCGPSKYEELENFLA 173 (432)
Q Consensus 147 --~~~~vHiLgYg~d~g~~~~~~L~~~l~ 173 (432)
.....|++.|..+ ..++..|.++.+
T Consensus 82 ~~~~~~~~l~lLAkn--~~Gy~nL~kL~S 108 (1151)
T PRK06826 82 DIDNETYHLVLLAKN--ETGYKNLMKIVS 108 (1151)
T ss_pred cccCCCceEEEEEcC--cHHHHHHHHHHH
Confidence 0123588888754 446666666544
No 25
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=99.28 E-value=1.2e-11 Score=140.28 Aligned_cols=93 Identities=25% Similarity=0.382 Sum_probs=81.2
Q ss_pred eeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
|++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|.++|++.||++|.|+|+..... +..
T Consensus 1 mfvhLh~hS~YSlldg~~~i~~lv~~A~~~g~~alAlTD~~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~------~~~ 74 (1034)
T PRK07279 1 MFAQLDTKTVYSFMDSLIDLEKYVERAKELGYQTIGIMDKDNLYGAYHFIEGAQKNGLQPILGLELNIFVE------EQE 74 (1034)
T ss_pred CeeeeecCCCCccccccCCHHHHHHHHHHCCCCEEEEEcCCccccHHHHHHHHHHcCCcEEEEEEEEEecC------CCc
Confidence 678999999999 999999999999999999999999999999999999999999999999999998643 234
Q ss_pred EEEEEEeccCCCCchHHHHHHHH
Q 014031 151 VHILAYYSSCGPSKYEELENFLA 173 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l~ 173 (432)
.|++.|..+ ..++..|.++.+
T Consensus 75 ~~lvlLAkN--~~GY~nL~kL~s 95 (1034)
T PRK07279 75 VTLRLIAKN--TQGYKNLLKIST 95 (1034)
T ss_pred ceEEEEECC--HHHHHHHHHHHH
Confidence 688888764 345666766654
No 26
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=99.27 E-value=1.5e-11 Score=138.25 Aligned_cols=94 Identities=23% Similarity=0.288 Sum_probs=82.0
Q ss_pred eeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCCc
Q 014031 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEEP 150 (432)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~~ 150 (432)
|++.||+||.|| ||..+|++++++|++.|++++|||||+++.|..+|.++|++.||++|.|+|+.... ..
T Consensus 1 mfvhLh~hS~YSlLdg~~~~~~lv~~A~e~g~~alALTD~~nl~GaveF~~~ak~~gIkPIiG~e~~v~~--------~~ 72 (971)
T PRK05898 1 MFINLNTHSHYSLLSSTLSIDDIIKFALDNNQPYVCLTDLNNLYGCIEFYDKAKAHNLIPIIGLEIEYQS--------TN 72 (971)
T ss_pred CeeeeecCCccccccccCCHHHHHHHHHHCCCCEEEEEeCCccccHHHHHHHHHHcCCCEEEEEEEEEcC--------CC
Confidence 678999999999 99999999999999999999999999999999999999999999999999998852 24
Q ss_pred EEEEEEeccCCCCchHHHHHHHHHHH
Q 014031 151 VHILAYYSSCGPSKYEELENFLANIR 176 (432)
Q Consensus 151 vHiLgYg~d~g~~~~~~L~~~l~~ir 176 (432)
.|++.|..+ ..++..|.++.+...
T Consensus 73 ~~lvLLAkn--~~GY~nL~kLsS~~~ 96 (971)
T PRK05898 73 ATLVLYAKN--YNGYLNLIKISSFIM 96 (971)
T ss_pred ceEEEEeCC--HHHHHHHHHHHHHHH
Confidence 688888754 456777777765443
No 27
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=99.27 E-value=4e-11 Score=118.47 Aligned_cols=200 Identities=22% Similarity=0.223 Sum_probs=131.4
Q ss_pred ceeEcceeeCcCC---CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhC--C------CeEeeEEEEEEee
Q 014031 72 NVVFELHSHSNFS---DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF--G------MKIIPGVEISTIF 140 (432)
Q Consensus 72 ~~~vDLH~HT~~S---DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~--g------i~vI~GiEis~~~ 140 (432)
.+..|||+||.|| -..+..+.+++.|+..|++.|+.-|.-.-....++.+..... | +.+|+-.|+..
T Consensus 2 ~~~aDLHiHs~ys~a~S~~m~~~~Ia~~A~~KGl~lvGtgD~~hP~w~e~ik~~~e~~e~g~~e~~~~~fi~t~evEd-- 79 (403)
T COG1379 2 QVNADLHIHSHYSGATSKLMVLPNIAEYAKLKGLDLVGTGDCLHPEWLEEIKKSIESDEDGTFEVKGVRFILTAEVED-- 79 (403)
T ss_pred ccccceeeeeccccccccccchHHHHhhhhhcccceecccccCChHHHHHHHHHhhhccccccccceeEEEEEEeecc--
Confidence 4678999999999 677899999999999999999999987766666665554431 2 33455444433
Q ss_pred cCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHH
Q 014031 141 CQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARA 220 (432)
Q Consensus 141 ~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~a 220 (432)
...||+|.+.+.. +...+|. +.|....=.| ...||||+
T Consensus 80 -------~~rVHhLlilPSl--~~~~El~------------------~~l~~~skni------------~~~grprv--- 117 (403)
T COG1379 80 -------SRRVHHLLILPSL--SAAEELS------------------EWLSKYSKNI------------ETEGRPRV--- 117 (403)
T ss_pred -------CCceeEEEEcCcH--HHHHHHH------------------HHHHHhhcCc------------cccCCcee---
Confidence 4689999998542 1112222 2222211111 13456654
Q ss_pred HHHcCccccHHHHHHHHhhCCCCcccCCCCCCHHHHHHHHHHcCCEEEEeCCCCC-----CCcHHHHHHHHHcCccEEEE
Q 014031 221 MVEAGHVENLKQAFARYLYDGGPAYSTGSEPLAEVAVQLIHRTGGLAVLAHPWAL-----KNPAAIIRKLKDVGLHGLEV 295 (432)
Q Consensus 221 Lv~~G~~~~~~~af~~yl~~~gp~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~-----~~~~~li~~L~~~GldGIEv 295 (432)
.++..+..+.++..||+...||-|.. +..+++-+.+-.+-+|.||.
T Consensus 118 -----------------------------~~tg~el~e~v~dlggL~gPaHaFtPwtslYk~~dSl~e~yg~a~iDfvEL 168 (403)
T COG1379 118 -----------------------------YLTGAELAEIVKDLGGLIGPAHAFTPWTSLYKKYDSLKECYGDAMIDFVEL 168 (403)
T ss_pred -----------------------------eccHHHHHHHHHHcccceecccccCccHHhhhhhchHHHHhCccchhHHHh
Confidence 35778999999999999999997643 22333333333334677777
Q ss_pred ecCCCcHHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccc----cccChhhHHHhhh
Q 014031 296 YRSDGKLVAYTDLADTYGLLKLGGSDYHGRGGHGESELGS----VKLPVLVLNDFLK 348 (432)
Q Consensus 296 ~~~~~~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~----~~~p~~~~~~~~~ 348 (432)
--|. +..+...+.+-+.|.....||+|.|. +.+||+ +.+++..++.|.+
T Consensus 169 GLSA-DtdmAD~I~el~~~pFLtNSDAHSp~---phrLgREfn~f~v~~~sF~~~r~ 221 (403)
T COG1379 169 GLSA-DTDMADMIEELHRLPFLTNSDAHSPY---PHRLGREFNQFEVEEISFEELRK 221 (403)
T ss_pred cccc-CchHHHHHHHhccCCcccccccCCCc---hhhhhhhhheeecccCCHHHHHH
Confidence 6554 34455556667889999999999974 235774 4566666666654
No 28
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.26 E-value=1.5e-11 Score=140.45 Aligned_cols=99 Identities=31% Similarity=0.430 Sum_probs=80.4
Q ss_pred eEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCC-C----CC
Q 014031 74 VFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQR-G----SE 146 (432)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~-~----~~ 146 (432)
+++||+||.|| ||..+|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++..+.. + ..
T Consensus 1 fv~LHvHS~yS~Ldg~~~~~elv~~A~~~G~~alAiTDH~~l~g~~~f~~~~~~~gIkpI~G~Ei~~~~~~~~~~~~~~~ 80 (1022)
T TIGR00594 1 FVHLHVHSDYSLLDGAAKIKPLVKKAKELGMPALALTDHGNMFGAVEFYKACKKAGIKPIIGCEAYVAPGSRFDKKRISK 80 (1022)
T ss_pred CeeeeecccCccccccCCHHHHHHHHHHCCCCEEEEecCCCchhHHHHHHHHHHcCCeEEEEEEEEeeCCCccccccccc
Confidence 47999999999 99999999999999999999999999999999999999999999999999999875321 0 00
Q ss_pred CCCcEEEEEEeccCCCCchHHHHHHHHH
Q 014031 147 SEEPVHILAYYSSCGPSKYEELENFLAN 174 (432)
Q Consensus 147 ~~~~vHiLgYg~d~g~~~~~~L~~~l~~ 174 (432)
.+...|++.|-.+ ..++..|.++.+.
T Consensus 81 ~~~~~~l~llAkn--~~Gy~nL~kL~S~ 106 (1022)
T TIGR00594 81 GKEAYHLILLAKN--NTGYRNLMKLSSL 106 (1022)
T ss_pred cCCCccEEEEeCC--HHHHHHHHHHHHH
Confidence 1123588888754 3456666666543
No 29
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=99.26 E-value=1.7e-11 Score=141.01 Aligned_cols=99 Identities=31% Similarity=0.451 Sum_probs=80.7
Q ss_pred eeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCC---CC
Q 014031 73 VVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS---ES 147 (432)
Q Consensus 73 ~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~---~~ 147 (432)
.++|||+||.|| ||..+|++++++|++.|++++|||||+++.|+.++.++|++.||++|+|+|+++..+.... ..
T Consensus 2 ~fv~LHvHS~ySlLdg~~~i~elv~~A~~~G~~alAiTDh~~l~G~~~f~~~~~~~gIkpIiG~E~~v~~~~~~~~~~~~ 81 (1170)
T PRK07374 2 AFVPLHNHSDYSLLDGASQLPKMVERAKELGMPAIALTDHGVMYGAIELLKLCKGKGIKPIIGNEMYVINGSIDDPQPKK 81 (1170)
T ss_pred CcccccccCcCchhhccCCHHHHHHHHHHCCCCEEEEecCCchHHHHHHHHHHHHcCCeEEEEeEEEecCcccccccccc
Confidence 378999999999 9999999999999999999999999999999999999999999999999999986421000 01
Q ss_pred CCcEEEEEEeccCCCCchHHHHHHHH
Q 014031 148 EEPVHILAYYSSCGPSKYEELENFLA 173 (432)
Q Consensus 148 ~~~vHiLgYg~d~g~~~~~~L~~~l~ 173 (432)
....|++.|..+ ..++..|.++.+
T Consensus 82 ~~~~~l~LLAkN--~~Gy~nL~kL~S 105 (1170)
T PRK07374 82 EKRYHLVVLAKN--ATGYKNLVKLTT 105 (1170)
T ss_pred cccceEEEEEeC--cHHHHHHHHHHH
Confidence 123588888754 456667766654
No 30
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=3e-11 Score=137.67 Aligned_cols=101 Identities=30% Similarity=0.371 Sum_probs=84.8
Q ss_pred ceeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCCCCCC
Q 014031 72 NVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFCQRGSESEE 149 (432)
Q Consensus 72 ~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~~~~~ 149 (432)
+.++.||+||.|| ||..+++++++.|++.|+.+||||||+++.|..+|..+|++.||++|.|+|++....... ....
T Consensus 2 ~~fv~Lh~hS~YS~Ldga~~i~~Lv~~A~~~g~~AlaiTD~~nl~Gav~Fy~~ak~~gikpIiG~e~~v~~~~~~-~~~~ 80 (1139)
T COG0587 2 MSFVHLHVHSEYSLLDGASKIEELVKKAKELGMPALALTDHNNLYGAVEFYKAAKKAGIKPIIGCEAYVANGDGF-RGRE 80 (1139)
T ss_pred CceeecccccccchhccccCHHHHHHHHHHcCCCeEEEecCCcceeHHHHHHHHHHcCCeEEeeeEEEEeccccc-cccC
Confidence 5689999999999 999999999999999999999999999999999999999999999999999888753211 1124
Q ss_pred cEEEEEEeccCCCCchHHHHHHHHHH
Q 014031 150 PVHILAYYSSCGPSKYEELENFLANI 175 (432)
Q Consensus 150 ~vHiLgYg~d~g~~~~~~L~~~l~~i 175 (432)
..|++.|-.+ +.++..|..+.+..
T Consensus 81 ~~~l~llAkn--~~GY~nL~~LsS~a 104 (1139)
T COG0587 81 RPHLLLLAKN--NEGYKNLVKLSSIA 104 (1139)
T ss_pred CccEEEEeCC--HHHHHHHHHHHHHH
Confidence 6899999865 45677777665443
No 31
>PRK06740 histidinol-phosphatase; Validated
Probab=99.16 E-value=3e-10 Score=115.31 Aligned_cols=74 Identities=19% Similarity=0.128 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCEEEEeCCCCCC-------------CcHHHHHHHHHcCccEEEEecCC---------CcHHHHHHHHHHc
Q 014031 255 VAVQLIHRTGGLAVLAHPWALK-------------NPAAIIRKLKDVGLHGLEVYRSD---------GKLVAYTDLADTY 312 (432)
Q Consensus 255 eaI~~I~~aGGi~VLAHP~~~~-------------~~~~li~~L~~~GldGIEv~~~~---------~~~~~~~~lA~~~ 312 (432)
.++++| ..|-+-|++||...+ ..+.+++.+++.| -++|+..+. .....+.++|.++
T Consensus 206 ~~~~~i-~~~~fdvIgHpDlik~f~~~~~~~~~~~~~~~I~~a~~~~g-~~lEINt~~~~r~~~~e~yP~~~il~~~~e~ 283 (331)
T PRK06740 206 TVECAI-RSELFDIIAHLDNIKVFNYRLDENEQLSYYKEIARALVETN-TATEINAGLYYRYPVREMCPSPLFLQVLAKH 283 (331)
T ss_pred HHHHHH-HcCCCCEeeCccHHHhcCCCcchhhhHHHHHHHHHHHHHcC-CEEEEECccccCCCCCCCCcCHHHHHHHHHC
Confidence 444555 588999999997321 1134556666677 569998752 1345678899999
Q ss_pred CCeeEeCCCCCCCCCCCCCCccc
Q 014031 313 GLLKLGGSDYHGRGGHGESELGS 335 (432)
Q Consensus 313 gLl~tgGSDfHg~~~~~~~~lG~ 335 (432)
|..+|-|||+|.+. .+|.
T Consensus 284 Gv~~tlgSDAH~p~-----~VG~ 301 (331)
T PRK06740 284 EVPITLSSDAHYPN-----DLGK 301 (331)
T ss_pred CCeEEEeeCCCCHH-----HHHh
Confidence 99999999999974 5664
No 32
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=98.99 E-value=5.8e-10 Score=124.73 Aligned_cols=72 Identities=35% Similarity=0.515 Sum_probs=68.6
Q ss_pred CCceeEcceeeCcCC--CCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEEEeec
Q 014031 70 DNNVVFELHSHSNFS--DGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEISTIFC 141 (432)
Q Consensus 70 ~~~~~vDLH~HT~~S--DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis~~~~ 141 (432)
....+++||.||.+| ||..+++++++.|+++|.++||||||+.+..++++.+++++.|+++|.|+|....+.
T Consensus 332 ~~eKRVELh~HTkMS~mDai~sv~~~vk~A~kwghkaIAITDh~~VqafP~~y~~akK~giK~IyG~EanlvdD 405 (1444)
T COG2176 332 AKEKRVELHFHTKMSQMDAITSVEELVKQAKKWGHKAIAITDHGVVQAFPEAYKAAKKYGIKAIYGLEANLVDD 405 (1444)
T ss_pred CccceEEEEeccchhhhcccCCHHHHHHHHHHcCCceEEEecCcchhhchHHHHhhhhcCceEEEeeeeeeccC
Confidence 447899999999999 999999999999999999999999999999999999999999999999999998654
No 33
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=7.2e-09 Score=97.82 Aligned_cols=174 Identities=24% Similarity=0.292 Sum_probs=107.9
Q ss_pred eEcceeeCcCC--CCCCCHHH---HHHHHHHcCCcEEEEecCCCCCCH---HH--------HHHHHH--hCCCeEeeEEE
Q 014031 74 VFELHSHSNFS--DGYLSPSK---LVERAHCNGVKVLALTDHDTMSGI---PE--------AIETAR--RFGMKIIPGVE 135 (432)
Q Consensus 74 ~vDLH~HT~~S--DG~~sp~e---lv~~A~~~Gl~~iaITDHdt~~g~---~~--------~~~~a~--~~gi~vI~GiE 135 (432)
++|.|||-... ||..+.++ +++.|.++|+..|..|-|..-.-+ .+ +.+..+ ..++.++||-|
T Consensus 1 MIDIH~HIlp~iDDGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~pGQE 80 (254)
T COG4464 1 MIDIHSHILPDIDDGPKSLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVLPGQE 80 (254)
T ss_pred CccccccccCCCCCCCCcHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHHHHHHHHHhhcCCceeccCce
Confidence 58999999987 99999987 677889999999999999653221 11 111222 25899999999
Q ss_pred EEEeecCCCCCCCCcEEEEEEeccCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChH
Q 014031 136 ISTIFCQRGSESEEPVHILAYYSSCGPSKYEELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRL 215 (432)
Q Consensus 136 is~~~~~~~~~~~~~vHiLgYg~d~g~~~~~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~ 215 (432)
|..+.. .+..+ ..++ +.-++..
T Consensus 81 IrIt~~-------------------------vl~~l----~~g~-------I~tinds---------------------- 102 (254)
T COG4464 81 IRITGD-------------------------VLDDL----DKGI-------ILTINDS---------------------- 102 (254)
T ss_pred EEEchH-------------------------HHHHH----hcCc-------ccccccc----------------------
Confidence 988631 11110 0000 0000000
Q ss_pred HHHHHHHHcCccccHHHHHHHHhhCCCC-cccCCCCCCHHHHHHHHHHcCCEEEEeCCCCCCC---cHHHHHHHHHcCcc
Q 014031 216 HVARAMVEAGHVENLKQAFARYLYDGGP-AYSTGSEPLAEVAVQLIHRTGGLAVLAHPWALKN---PAAIIRKLKDVGLH 291 (432)
Q Consensus 216 hia~aLv~~G~~~~~~~af~~yl~~~gp-~yv~~~~~~~eeaI~~I~~aGGi~VLAHP~~~~~---~~~li~~L~~~Gld 291 (432)
+|+--+=| ..+ .-...++.-.+...|-+||+|||.|++. ...++.+|.+.|.-
T Consensus 103 --------------------kYlLIEF~~~~v---~~ya~~lf~elq~kGi~PIIAHPERn~~i~kn~~~lyeLid~ga~ 159 (254)
T COG4464 103 --------------------KYLLIEFPMNHV---PRYADQLFFELQSKGIIPIIAHPERNRAIQKNPYLLYELIDKGAY 159 (254)
T ss_pred --------------------ceEEEEccCCcc---hhhHHHHHHHHHHCCceeeeechhhHHHHHhChHHHHHHHhcccc
Confidence 11100000 000 0134677788899999999999998752 24578888888853
Q ss_pred EEEEecCC-----C-cHHHHHHHHHHcCCeeEeCCCCCCCCCCC
Q 014031 292 GLEVYRSD-----G-KLVAYTDLADTYGLLKLGGSDYHGRGGHG 329 (432)
Q Consensus 292 GIEv~~~~-----~-~~~~~~~lA~~~gLl~tgGSDfHg~~~~~ 329 (432)
-.|..+. + ..+++....-+.+|...-+||+|..+.++
T Consensus 160 -sQvts~Sl~GlfGK~ikK~a~~~iE~~L~hFiASDAHn~~~R~ 202 (254)
T COG4464 160 -SQVTSSSLAGLFGKKIKKFALQLIEANLVHFIASDAHNVDKRP 202 (254)
T ss_pred -eeechHhHHhhhhHHHHHHHHHHHHcccceeeeccccccCCCC
Confidence 2444433 1 34444444457799999999999987665
No 34
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=96.73 E-value=0.00074 Score=51.09 Aligned_cols=42 Identities=33% Similarity=0.405 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCeeEeCCCCCCCCCCCCCCccccc----cChhhHHHhhh
Q 014031 302 LVAYTDLADTYGLLKLGGSDYHGRGGHGESELGSVK----LPVLVLNDFLK 348 (432)
Q Consensus 302 ~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~~lG~~~----~p~~~~~~~~~ 348 (432)
+.+..++|+++++++++|||+|.+ ..+|... .+....++|++
T Consensus 4 N~~A~~~A~~~~lp~~~gSDAH~~-----~~vG~~~t~~~~~~~s~~~l~~ 49 (56)
T PF13263_consen 4 NRRAAELAEKYGLPFTGGSDAHFL-----EEVGRGYTEFEGPIRSPEELLE 49 (56)
T ss_dssp --HHHHHHHHTT--EEEE--BSSG-----GGTTTTHHHH------------
T ss_pred HHHHHHHHHHcCCCeEeEEcccCh-----hhcCCEeeeccccccccccccc
Confidence 456788999999999999999986 3688763 23344455554
No 35
>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria. Proteins in this family are typically between 621 and 693 amino acids in length.
Probab=90.55 E-value=0.23 Score=54.19 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=38.4
Q ss_pred CceeEcceeeCcCC-C-----CCCCHHHHHHHHH--------------HcCCcEEEEecCCCCCCHHH
Q 014031 71 NNVVFELHSHSNFS-D-----GYLSPSKLVERAH--------------CNGVKVLALTDHDTMSGIPE 118 (432)
Q Consensus 71 ~~~~vDLH~HT~~S-D-----G~~sp~elv~~A~--------------~~Gl~~iaITDHdt~~g~~~ 118 (432)
..+..|||+||.+| | -..+|++--+-|+ .+=||+++||||-...|...
T Consensus 5 ~~yfGDlHlHT~~S~DA~~~G~~~~P~dAYRfAkGe~v~~~~G~~vqL~rPLDF~aVTDHaE~lG~~~ 72 (592)
T PF12228_consen 5 QPYFGDLHLHTSYSFDAYAFGNRLTPDDAYRFAKGEPVTHPSGQPVQLDRPLDFLAVTDHAEFLGEVR 72 (592)
T ss_pred cccccccccccccccchhhccCCCCHHHHHHHhcCCcccCCCCCEeeeCCCcceeEEcccHhhhhhHH
Confidence 46889999999999 5 3478998877775 34589999999988777654
No 36
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=87.96 E-value=13 Score=34.75 Aligned_cols=69 Identities=26% Similarity=0.274 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCC--------cHHHHHHHHHHcCCeeEeCCCCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--------KLVAYTDLADTYGLLKLGGSDYH 323 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~--------~~~~~~~lA~~~gLl~tgGSDfH 323 (432)
.++++++.... |+..++.|.... .+..++.+++.|+- +++....+ ....+.+ +.+.|..++-|||..
T Consensus 162 ~~~~~~~~~~~-~~~~~~~H~~~~--~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~lgTD~~ 236 (275)
T cd01292 162 ALEDLVALLRL-GGRVVIGHVSHL--DPELLELLKEAGVS-LEVCPLSNYLLGRDGEGAEALRR-LLELGIRVTLGTDGP 236 (275)
T ss_pred CHHHHHHHHhc-CCCEEEECCccC--CHHHHHHHHHcCCe-EEECCcccccccCCcCCcccHHH-HHHCCCcEEEecCCC
Confidence 35666665554 788999999765 34567777777753 55544321 1122333 346678999999976
Q ss_pred CC
Q 014031 324 GR 325 (432)
Q Consensus 324 g~ 325 (432)
..
T Consensus 237 ~~ 238 (275)
T cd01292 237 PH 238 (275)
T ss_pred CC
Confidence 54
No 37
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=87.00 E-value=1.1 Score=42.52 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=42.2
Q ss_pred eEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEE
Q 014031 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEI 136 (432)
Q Consensus 74 ~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEi 136 (432)
.+|-|||...+.-..+++++++.+.+.|++.+.+.-.+ ..++..+.+.+++.+ .+++++=+
T Consensus 1 ~iD~H~Hl~~~~~~~~~~~~~~~~~~~Gv~~~v~~~~~-~~~~~~~~~~~~~~~-~i~~~~Gi 61 (252)
T TIGR00010 1 LIDAHCHLDFLDFEEDVEEVIERAKAAGVTAVVAVGTD-LEDFLRALELAEKYP-NVYAAVGV 61 (252)
T ss_pred CEEeccCCCChhhccCHHHHHHHHHHcCCCEEEEecCC-HHHHHHHHHHHHHCC-CEEEEEEe
Confidence 37999997644322379999999999999998854333 234566667777777 66665443
No 38
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=82.63 E-value=2.9 Score=41.39 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=42.5
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (432)
++.+|-|||-.+..=..+.++++++|++.|+..+.++== +......+.++++++.
T Consensus 1 ~~liDtH~HL~~~~~~~d~~~vi~~a~~~gv~~~~~~g~-~~~~~~~~~~la~~y~ 55 (256)
T COG0084 1 MMLIDTHCHLDFEEFDEDRDEVIARAREAGVKKMVVVGT-DLEDFKRALELAEKYP 55 (256)
T ss_pred CccEEeeeCCCchhhcCCHHHHHHHHHHcCCcEEEEeec-CHHHHHHHHHHHHhCC
Confidence 478999999998755567899999999999888877542 3334556778888776
No 39
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=77.49 E-value=3.8 Score=39.90 Aligned_cols=62 Identities=19% Similarity=0.312 Sum_probs=42.1
Q ss_pred EcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEEEE
Q 014031 75 FELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVEIS 137 (432)
Q Consensus 75 vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiEis 137 (432)
+|.|||....+-..+..++++.|.+.|+..++++-.+.. .+....+.+++.+..+++++=+-
T Consensus 1 iD~H~Hl~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~-~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 1 IDAHCHLDSPRFEEDRPEVLERAREAGVSAIIIVSTDPE-DWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp EEEEE-TTSGGGTTTHHHHHHHHHHTTEEEEEEEESSHH-HHHHHHHHHHHTTTEEEEEE---
T ss_pred CcCccCCCChhhCcCHHHHHHHHHHcCCCEEEEcCCCHH-HhHHHHHHHhcCCCeEEEEecCC
Confidence 689999987433445888889999999999977655543 44556666777777676654443
No 40
>PRK10812 putative DNAse; Provisional
Probab=76.60 E-value=5.2 Score=39.56 Aligned_cols=54 Identities=11% Similarity=0.162 Sum_probs=37.1
Q ss_pred eeEcceeeCc---CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 014031 73 VVFELHSHSN---FSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (432)
Q Consensus 73 ~~vDLH~HT~---~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (432)
+.+|-|||-. +++=...+++++++|.+.|+..+.++=-+ ...+..+.+.++.+.
T Consensus 2 ~~iDtH~Hl~~~~~~~~~~d~~~vl~~a~~~gv~~~~~~~~~-~~~~~~~~~l~~~~~ 58 (265)
T PRK10812 2 FLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATT-LPGYRHMRDLVGERD 58 (265)
T ss_pred ceEEeccCCCCccchhhhcCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHhhCC
Confidence 4689999986 33223478999999999999877654322 334556667776653
No 41
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=76.37 E-value=11 Score=38.56 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCCEE-EEeCCCCC
Q 014031 253 AEVAVQLIHRTGGLA-VLAHPWAL 275 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~-VLAHP~~~ 275 (432)
.++.+++|.+.||++ |-++|...
T Consensus 204 ~D~qlkaI~~~gGvIgv~~~~~fl 227 (313)
T COG2355 204 SDEQLKAIAETGGVIGVNFIPAFL 227 (313)
T ss_pred CHHHHHHHHhcCCEEEEEeehhhc
Confidence 467888888888886 66777543
No 42
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.18 E-value=6.5 Score=38.23 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=47.0
Q ss_pred cceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEec--CCCCCCHHHHHHHHHhCCCeEeeEEEEEE
Q 014031 76 ELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTD--HDTMSGIPEAIETARRFGMKIIPGVEIST 138 (432)
Q Consensus 76 DLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITD--Hdt~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (432)
-+|+++.+|+-...|+++++.+++.|.+.+.|=| .++..-..++.+.+++.|+.+ |++++.
T Consensus 76 Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~--~~~v~p 138 (244)
T PRK13125 76 PIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKP--VFFTSP 138 (244)
T ss_pred CEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 3588899998777999999999999999999954 222334566778888999987 455554
No 43
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=74.54 E-value=6.1 Score=38.86 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=37.3
Q ss_pred eeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhC
Q 014031 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRF 126 (432)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~ 126 (432)
-.+|-|||-.++.=..+.++++++|++.|+..+.++=- +...+..+.+.++.+
T Consensus 4 ~~iD~HcHl~~~~~~~~~~~~l~~a~~~gv~~~~~~~~-~~~~~~~~~~l~~~~ 56 (258)
T PRK11449 4 RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPAT-EAENFARVLALAERY 56 (258)
T ss_pred eEEEeccCCCChhhccCHHHHHHHHHHCCCCEEEEeeC-CHHHHHHHHHHHHhC
Confidence 46899999876532336889999999999988876432 233456666777655
No 44
>PRK10425 DNase TatD; Provisional
Probab=74.26 E-value=6.1 Score=38.92 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=37.2
Q ss_pred eEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCC
Q 014031 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFG 127 (432)
Q Consensus 74 ~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~g 127 (432)
.+|-|||-.+..-.-..++++++|++.|+..+.++--+ ...+.++.+.++.+.
T Consensus 1 ~iDtH~HL~~~~~~~d~~~vl~~a~~~gv~~~i~~~~~-~~~~~~~~~l~~~~~ 53 (258)
T PRK10425 1 MFDIGVNLTSSQFAKDRDDVVARAFAAGVNGMLITGTN-LRESQQAQKLARQYP 53 (258)
T ss_pred CEEeeeCcCChhhhccHHHHHHHHHHCCCCEEEEeCCC-HHHHHHHHHHHHhCC
Confidence 37999997644333478899999999998777665443 344566777776653
No 45
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=72.23 E-value=1e+02 Score=31.57 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=35.9
Q ss_pred CCceeEcceeeCcCC-CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC
Q 014031 70 DNNVVFELHSHSNFS-DGYLSPSKLVERAHCNGVKVLALTDHDTMSG 115 (432)
Q Consensus 70 ~~~~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g 115 (432)
....++|.++|-.|- ...-..+.+.+....-.++.|++.||-.-.+
T Consensus 77 ~~~~~~d~~~hlR~E~~~~~~~~~~~~~~~~~~v~lvs~~dH~pg~~ 123 (325)
T cd01306 77 RGVLRADHRLHLRCELADPAVLPELESLMADPRVHLVSLMDHTPGQR 123 (325)
T ss_pred CCcchhhcceEEEEeecCccHHHHHHHHhcCCCcCEEEEeCCCCccc
Confidence 357789999998876 4445677777777788899999999977654
No 46
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=72.14 E-value=9.6 Score=38.13 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHcC-CEEEEeCCCC------CC-CcHHHHHHHHHcCccEEEEe--cCCCc--H---HHHHHHHHHcC
Q 014031 249 SEPLAEVAVQLIHRTG-GLAVLAHPWA------LK-NPAAIIRKLKDVGLHGLEVY--RSDGK--L---VAYTDLADTYG 313 (432)
Q Consensus 249 ~~~~~eeaI~~I~~aG-Gi~VLAHP~~------~~-~~~~li~~L~~~GldGIEv~--~~~~~--~---~~~~~lA~~~g 313 (432)
....++|+++..++-| ||.++.|=.. +. ..++.+..+.+.|+.||=+= .++.+ . +.+.+-|.+|+
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEYK 150 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHTT
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHcC
Confidence 3578999999999999 7888888644 22 23678888999999999993 34433 2 34556788999
Q ss_pred CeeEeCCCCCCCCCC
Q 014031 314 LLKLGGSDYHGRGGH 328 (432)
Q Consensus 314 Ll~tgGSDfHg~~~~ 328 (432)
|++ ||||..+|
T Consensus 151 Lmv----nfHg~~kP 161 (273)
T PF10566_consen 151 LMV----NFHGATKP 161 (273)
T ss_dssp -EE----EETTS---
T ss_pred cEE----EecCCcCC
Confidence 987 89997654
No 47
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=68.67 E-value=10 Score=35.76 Aligned_cols=58 Identities=19% Similarity=0.354 Sum_probs=38.1
Q ss_pred eEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeE
Q 014031 74 VFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (432)
Q Consensus 74 ~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~G 133 (432)
.+|.|||........+++++++.+.+.|+..+.+.--+ ......+.+.+++. ..++++
T Consensus 1 ~~D~H~H~~~~~~~~~~~~~l~~~~~~gv~~~v~~~~~-~~~~~~~~~la~~~-~~i~~~ 58 (251)
T cd01310 1 LIDTHCHLDFPQFDADRDDVLARAREAGVIKIIVVGTD-LKSSKRALELAKKY-DNVYAA 58 (251)
T ss_pred CEEeeeCCCchhhccCHHHHHHHHHHcCCCEEEEeCCC-HHHHHHHHHHHHhC-CCeEEE
Confidence 37999998644334688999999999999888876322 11234455555555 344444
No 48
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=67.28 E-value=17 Score=39.18 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCC-CCCHHHHHHHHHhCCCeEeeEEE
Q 014031 90 PSKLVERAHCNGVKVLALTDHDT-MSGIPEAIETARRFGMKIIPGVE 135 (432)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt-~~g~~~~~~~a~~~gi~vI~GiE 135 (432)
++..+++|+++|++.+=|.||-+ +.....+.+.+++.|..+...+-
T Consensus 107 v~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 107 VDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 45579999999999999999954 45667778888889987764333
No 49
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=65.76 E-value=22 Score=34.23 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-CcHHHHHHHHHHcC
Q 014031 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 313 (432)
Q Consensus 254 eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA~~~g 313 (432)
.++.......+=++|+.++.. ..-..+.+.|.+.|++.||+-.+. .-.+....+++++.
T Consensus 4 ~~~~~~l~~~~vI~Vlr~~~~-e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p 63 (211)
T COG0800 4 MKILSKLKAQPVVPVIRGDDV-EEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFP 63 (211)
T ss_pred hHHHHHHHHCCeeEEEEeCCH-HHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCc
Confidence 466778888899999988731 112346777899999999996544 44555666666665
No 50
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=62.92 E-value=27 Score=36.94 Aligned_cols=49 Identities=27% Similarity=0.469 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCcEEEEecC-CCCCCHHHHHHHHHhCCCeEeeEEEEEE
Q 014031 90 PSKLVERAHCNGVKVLALTDH-DTMSGIPEAIETARRFGMKIIPGVEIST 138 (432)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDH-dt~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (432)
++..|++|.++|++.+=|=|- |...++..+.+++++.|..+.--+-.++
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~ 149 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTT 149 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEecc
Confidence 677899999999999999887 5567788888888999886654444443
No 51
>cd01295 AdeC Adenine deaminase (AdeC) directly deaminates adenine to form hypoxanthine. This reaction is part of one of the adenine salvage pathways, as well as the degradation pathway. It is important for adenine utilization as a purine, as well as a nitrogen source in bacteria and archea.
Probab=62.29 E-value=15 Score=38.52 Aligned_cols=60 Identities=22% Similarity=0.290 Sum_probs=43.9
Q ss_pred eeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC--C---CHHHHHHHHHhCCCeEeeEE
Q 014031 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTM--S---GIPEAIETARRFGMKIIPGV 134 (432)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~--~---g~~~~~~~a~~~gi~vI~Gi 134 (432)
-.+|.|+|...|- .+|+++.+.|...|+..+..-.|... . ++..+.+.+++..+.++..+
T Consensus 10 G~ID~H~Hi~~~~--~~~~~~~~~a~~~GvTtvv~~p~~~~~v~g~~~~~~~~~~a~~~p~~~~~~~ 74 (422)
T cd01295 10 GFIDAHLHIESSM--LTPSEFAKAVLPHGTTTVIADPHEIANVAGVDGIEFMLEDAKKTPLDIFWML 74 (422)
T ss_pred CEEEccCCcCCCC--CChHHHHHHHHCCCcEEEEeCCCCCCcCCCHHHHHHHHHHHhCCCceEEEeC
Confidence 4689999987652 57889999999999999988666532 2 34555666666677666665
No 52
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=60.33 E-value=2.9 Score=38.33 Aligned_cols=20 Identities=50% Similarity=0.684 Sum_probs=0.0
Q ss_pred cccchhhhhhhccCCCCCCC
Q 014031 9 KRSKDKKKKKKQKRGGGKKK 28 (432)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (432)
|.++|+|+|||++.+++|++
T Consensus 83 k~kKK~KKkkKkkKk~~k~~ 102 (154)
T PF06375_consen 83 KKKKKKKKKKKKKKKSKKRH 102 (154)
T ss_dssp --------------------
T ss_pred hhhhhccchhcccccCCCCC
Confidence 33344444444344444433
No 53
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=55.67 E-value=24 Score=31.26 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCC---CeEeeE
Q 014031 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFG---MKIIPG 133 (432)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~g---i~vI~G 133 (432)
....||+++++.|++.+.+.|+|+-.++.. ..+++.++.++.+ ++++.|
T Consensus 37 g~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 37 PLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 345689999999999999999999887532 3455555555543 444444
No 54
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.39 E-value=37 Score=30.33 Aligned_cols=41 Identities=5% Similarity=0.033 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCC
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGM 128 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi 128 (432)
.+|+++++.|++.+.++|+++-..+..- ..++.+..++.|+
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 4799999999999999999999887553 5666677777665
No 55
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=53.53 E-value=28 Score=33.37 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=33.4
Q ss_pred cHHHHHHHHHcCccEEEEecCCC-cHHHHHHHHHHcCCeeEeC
Q 014031 278 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLGG 319 (432)
Q Consensus 278 ~~~li~~L~~~GldGIEv~~~~~-~~~~~~~lA~~~gLl~tgG 319 (432)
..+.++.++++|++|||++.+.. ..+.+.++++++||-+++-
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEE
Confidence 45678888899999999987543 4667888999999987764
No 56
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=52.34 E-value=34 Score=33.08 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=33.9
Q ss_pred cHHHHHHHHHcCccEEEEecCCC-cHHHHHHHHHHcCCeeEe
Q 014031 278 PAAIIRKLKDVGLHGLEVYRSDG-KLVAYTDLADTYGLLKLG 318 (432)
Q Consensus 278 ~~~li~~L~~~GldGIEv~~~~~-~~~~~~~lA~~~gLl~tg 318 (432)
.++.++.++++|++|||+..+.. +.+.+.++++++||-+++
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 45678889999999999977543 677888999999998875
No 57
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=52.23 E-value=50 Score=31.69 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-CcHHHHHHHHHHcC
Q 014031 253 AEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 313 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA~~~g 313 (432)
..++++.+...+=++|+-++.. ..-..+.+.|.+.|++.||+-... +-.+.+..+.+++.
T Consensus 5 ~~~~~~~l~~~~~iaV~r~~~~-~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p 65 (212)
T PRK05718 5 KTSIEEILRAGPVVPVIVINKL-EDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVP 65 (212)
T ss_pred HHHHHHHHHHCCEEEEEEcCCH-HHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCC
Confidence 3467788889999999987632 122356777888999999997544 33455566666654
No 58
>PRK09358 adenosine deaminase; Provisional
Probab=51.98 E-value=13 Score=37.71 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=27.0
Q ss_pred CceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 014031 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (432)
Q Consensus 71 ~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (432)
...++|||+|- ||+++|+.+.+.|+++|++.
T Consensus 9 ~lpK~eLH~Hl---~Gs~~~~~l~~l~~~~~~~~ 39 (340)
T PRK09358 9 SLPKAELHLHL---DGSLRPETILELARRNGIAL 39 (340)
T ss_pred cCCceeEEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 35689999998 68999999999999999763
No 59
>TIGR01975 isoAsp_dipep isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases.
Probab=51.79 E-value=3e+02 Score=28.72 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=37.7
Q ss_pred ceeEcceeeCcCC---CCC--CCHHHHHHHHHHcCCcEEEEecCC-----CCC--CHHHHHHHHHhCCCeEeeE
Q 014031 72 NVVFELHSHSNFS---DGY--LSPSKLVERAHCNGVKVLALTDHD-----TMS--GIPEAIETARRFGMKIIPG 133 (432)
Q Consensus 72 ~~~vDLH~HT~~S---DG~--~sp~elv~~A~~~Gl~~iaITDHd-----t~~--g~~~~~~~a~~~gi~vI~G 133 (432)
+=.+|.|+|.... ++. .+|+..+..+.+.|+..+. |.- +.. ......++....||.-+.+
T Consensus 56 PGlID~HvH~~~gg~~~~~~~~~~e~~~~e~l~~GvTTv~--d~~g~~~~~~~~~~~~a~~~al~~~Gir~~~~ 127 (389)
T TIGR01975 56 PGFIDQHVHIIGGGGEGGPTTRTPELTLSDITKGGVTTVV--GLLGTDGITRHMESLLAKARALEEEGISCYML 127 (389)
T ss_pred cCEeehhhccccccccCCCccCCHHHHHHHHHhCCcEEEe--cCcccCccccChhhHHHHHHHHHHhCCEEEEE
Confidence 4579999998753 444 5788778888999999886 432 211 1222334445567765544
No 60
>PRK07228 N-ethylammeline chlorohydrolase; Provisional
Probab=50.52 E-value=47 Score=34.80 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=43.0
Q ss_pred ceeEcceeeCcCCC--C--------------------CCCHHHHHHHHH-------HcCCcEEEEecCCCCCCHHHHHHH
Q 014031 72 NVVFELHSHSNFSD--G--------------------YLSPSKLVERAH-------CNGVKVLALTDHDTMSGIPEAIET 122 (432)
Q Consensus 72 ~~~vDLH~HT~~SD--G--------------------~~sp~elv~~A~-------~~Gl~~iaITDHdt~~g~~~~~~~ 122 (432)
+=.+|.|+|...+. | .++|+++...|. ..|+..+. ||.+........++
T Consensus 56 PGlId~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~e~L~~GvTtv~--d~~~~~~~~~~~~a 133 (445)
T PRK07228 56 PGLIQGHIHLCQTLFRGIADDLELLDWLKDRIWPLEAAHDAESMYYSALLGIGELIESGTTTIV--DMESVHHTDSAFEA 133 (445)
T ss_pred cCEEecccCCccccceeccCCCCHHHHHHhhhhhhhhhCCHHHHHHHHHHHHHHHHhcCceEEE--ccccccChHHHHHH
Confidence 44799999987541 1 134555555554 78876665 87765555666677
Q ss_pred HHhCCCeEeeEEEEE
Q 014031 123 ARRFGMKIIPGVEIS 137 (432)
Q Consensus 123 a~~~gi~vI~GiEis 137 (432)
+.+.|++.+.|.++.
T Consensus 134 ~~~~g~r~~~~~~~~ 148 (445)
T PRK07228 134 AGESGIRAVLGKVMM 148 (445)
T ss_pred HHHcCCeEEEeccee
Confidence 778899888877664
No 61
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=50.01 E-value=14 Score=36.99 Aligned_cols=30 Identities=40% Similarity=0.433 Sum_probs=25.1
Q ss_pred CceeEcceeeCcCCCCCCCHHHHHHHHHHcCCc
Q 014031 71 NNVVFELHSHSNFSDGYLSPSKLVERAHCNGVK 103 (432)
Q Consensus 71 ~~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~ 103 (432)
|..++|||+|- +|+++++.+++.|++.++.
T Consensus 1 m~pK~eLH~HL---~Gsi~~~~l~ela~~~~~~ 30 (331)
T PF00962_consen 1 MLPKAELHIHL---DGSISPETLLELAKKNNIC 30 (331)
T ss_dssp TS-EEEEEEEG---GGSS-HHHHHHHHHHCTCC
T ss_pred CCCEEEeeeCC---ccCCCHHHHHHHHHhCCCC
Confidence 45689999998 5999999999999999976
No 62
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.41 E-value=55 Score=31.40 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-CcHHHHHHHHHHc----CCeeEeCC
Q 014031 255 VAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTY----GLLKLGGS 320 (432)
Q Consensus 255 eaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA~~~----gLl~tgGS 320 (432)
++++.+...+=++|+..... ..-..+.+.|.+.|+..+|+.... +-.+.+..+++++ ++++-+|+
T Consensus 5 ~~~~~l~~~~vi~vir~~~~-~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT 74 (213)
T PRK06552 5 EILTKLKANGVVAVVRGESK-EEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT 74 (213)
T ss_pred HHHHHHHHCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee
Confidence 56788889999999977621 122457778899999999997654 4456677788777 36554443
No 63
>PTZ00124 adenosine deaminase; Provisional
Probab=49.36 E-value=14 Score=38.34 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.6
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (432)
..+++||+|- ||+++|+.+.+.|+++|++.
T Consensus 35 lPKvELH~HL---dGsi~~~tl~~La~~~~~~~ 64 (362)
T PTZ00124 35 IPKCELHCHL---DLCFSVDFFLSCIRKYNLQP 64 (362)
T ss_pred CCceeEeecc---cCCCCHHHHHHHHHHcCCCC
Confidence 5689999998 69999999999999999754
No 64
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=49.25 E-value=1.1e+02 Score=30.56 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCccEEEEec-CCCcHHHHHHHHHHcCC
Q 014031 279 AAIIRKLKDVGLHGLEVYR-SDGKLVAYTDLADTYGL 314 (432)
Q Consensus 279 ~~li~~L~~~GldGIEv~~-~~~~~~~~~~lA~~~gL 314 (432)
+..++.+++.|+||+=+-. |......+.+.|+++|+
T Consensus 112 e~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi 148 (265)
T COG0159 112 EKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGI 148 (265)
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCC
Confidence 5678888899999987755 33455678888888876
No 65
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.15 E-value=26 Score=33.55 Aligned_cols=44 Identities=30% Similarity=0.475 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEE
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (432)
|+..-.+-++.|.+.|.++| +|.|-+ ++..+.|++.|+.++||+
T Consensus 65 GTVl~~~~a~~a~~aGA~Fi-vsP~~~----~~v~~~~~~~~i~~iPG~ 108 (204)
T TIGR01182 65 GTVLNPEQLRQAVDAGAQFI-VSPGLT----PELAKHAQDHGIPIIPGV 108 (204)
T ss_pred EeCCCHHHHHHHHHcCCCEE-ECCCCC----HHHHHHHHHcCCcEECCC
Confidence 44444556899999999999 777653 578888999999999996
No 66
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=47.90 E-value=1.1e+02 Score=30.19 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC-CeeEeCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG-LLKLGGS 320 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g-Ll~tgGS 320 (432)
..++-++...++|.--++.|........++++.+++.|++-+=+.+|....+++..+++.-. ++...++
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEEC
Confidence 45888999999998888888754434456777778889998888888776677776666543 5555444
No 67
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=47.18 E-value=36 Score=35.22 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHcCCEEEE-----eCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCC
Q 014031 251 PLAEVAVQLIHRTGGLAVL-----AHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGS 320 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VL-----AHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGS 320 (432)
..++++|+..|++|--..+ .|+.........++.|.+.|+|+|++..+. +..++++.+ |.+..+.
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~Dpg-----~i~l~~e~~p~l~ih~S~ 120 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGVDAVIVADPG-----LIMLARERGPDLPIHVST 120 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCCCEEEEcCHH-----HHHHHHHhCCCCcEEEee
Confidence 3578999999999993332 334332223467888999999999998765 566777665 6655544
No 68
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=46.99 E-value=62 Score=28.69 Aligned_cols=41 Identities=7% Similarity=0.078 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCC
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGM 128 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi 128 (432)
.+|+++++.|.+.+.+.|+++-..+.. ...+..+..++.|+
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 579999999999999999999987654 35566666666554
No 69
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=45.97 E-value=69 Score=32.66 Aligned_cols=66 Identities=14% Similarity=0.326 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCCC
Q 014031 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 321 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGSD 321 (432)
|...++++.+++.||.+++-|+.-. ...+++.+.++|++++-+-....+.. +..+.++ +.+.|+=|
T Consensus 198 P~~krIi~~ik~~~g~piilH~cG~--~~~~l~~~~e~g~dvl~~d~~~~dl~---eak~~~g~k~~l~GNlD 265 (321)
T cd03309 198 PRMQRIFDFLRSNTSALIVHHSCGA--AASLVPSMAEMGVDSWNVVMTANNTA---ELRRLLGDKVVLAGAID 265 (321)
T ss_pred HHHHHHHHHHHhccCCceEEEeCCC--cHHHHHHHHHcCCCEEEecCCCCCHH---HHHHHhCCCeEEEcCCC
Confidence 5678999999999888888899643 23578889999999988865443333 3333433 55666655
No 70
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=45.32 E-value=10 Score=37.33 Aligned_cols=75 Identities=20% Similarity=0.150 Sum_probs=53.2
Q ss_pred CCCHHHHHHHHHHcCCEEEEeCCCCCC---CcH-HHHHHHHHcCccEEEEecCCCc----HHHHHHHHHHcCCeeEeCCC
Q 014031 250 EPLAEVAVQLIHRTGGLAVLAHPWALK---NPA-AIIRKLKDVGLHGLEVYRSDGK----LVAYTDLADTYGLLKLGGSD 321 (432)
Q Consensus 250 ~~~~eeaI~~I~~aGGi~VLAHP~~~~---~~~-~li~~L~~~GldGIEv~~~~~~----~~~~~~lA~~~gLl~tgGSD 321 (432)
....++.++.|+..++.+++.||+... .+. ...+.+. -.+.+|.+|+... +.++.+.+..|+....++||
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~h~--~~~~ve~~~~~~~~~~fn~~~~~~~~~~~~~~~~~~~ 174 (258)
T COG0613 97 QLYREERLEEIKERLGKAIIPHPFEGARKLAGLGAITRAHI--ARDAVEVGNASTRQGVFNKYLKRGAPKYVPPEWADSE 174 (258)
T ss_pred cccHHHHHHHHHHhCCccccCcchHHHHhcCCcccchhhhh--hhhhhccccccchHHHHHHHHhccCcccCcccccCHH
Confidence 357889999999999999999997421 111 1122221 2477999998753 44566677788899999999
Q ss_pred CCCCC
Q 014031 322 YHGRG 326 (432)
Q Consensus 322 fHg~~ 326 (432)
.|-..
T Consensus 175 ~~i~~ 179 (258)
T COG0613 175 AHVGA 179 (258)
T ss_pred HHHHH
Confidence 99653
No 71
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=44.21 E-value=34 Score=34.83 Aligned_cols=49 Identities=24% Similarity=0.309 Sum_probs=32.3
Q ss_pred eCCCCCCC--cHHHHHHHHHcCccEEEEecCC---------------CcHHHHHHHHHHcCCeeEe
Q 014031 270 AHPWALKN--PAAIIRKLKDVGLHGLEVYRSD---------------GKLVAYTDLADTYGLLKLG 318 (432)
Q Consensus 270 AHP~~~~~--~~~li~~L~~~GldGIEv~~~~---------------~~~~~~~~lA~~~gLl~tg 318 (432)
-|++|... ....++.++++|+..|++|-+= .+...+.++|++.||.++.
T Consensus 16 ~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vil 81 (319)
T PF01301_consen 16 FHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVIL 81 (319)
T ss_dssp E-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEE
T ss_pred eccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEe
Confidence 37776541 2567888999999999998641 1467899999999997653
No 72
>PRK09989 hypothetical protein; Provisional
Probab=42.60 E-value=50 Score=31.86 Aligned_cols=40 Identities=8% Similarity=-0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHHcCccEEEEecCC-CcHHHHHHHHHHcCCeeEe
Q 014031 279 AAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYGLLKLG 318 (432)
Q Consensus 279 ~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA~~~gLl~tg 318 (432)
.+.++.++++|++|||+..+. ...+.+.++.+++||-+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 457778888999999986543 3566788889999998775
No 73
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=42.52 E-value=78 Score=30.49 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=42.7
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC-C-HHHHHHHHHhCCCeEeeEEEEEEe
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTMS-G-IPEAIETARRFGMKIIPGVEISTI 139 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~-g-~~~~~~~a~~~gi~vI~GiEis~~ 139 (432)
...+|+|.|+ .+|+..++.+.+.|.+.+.| |-... . ..++.+.+++.|++ .|+.+.+.
T Consensus 65 ~~~lDvHLm~------~~p~~~i~~~~~~Gad~itv--H~ea~~~~~~~~l~~ik~~G~~--~gval~p~ 124 (228)
T PTZ00170 65 NTFLDCHLMV------SNPEKWVDDFAKAGASQFTF--HIEATEDDPKAVARKIREAGMK--VGVAIKPK 124 (228)
T ss_pred CCCEEEEECC------CCHHHHHHHHHHcCCCEEEE--eccCCchHHHHHHHHHHHCCCe--EEEEECCC
Confidence 5668999995 47999999999999998877 64432 2 45667777788864 47666543
No 74
>cd01312 Met_dep_hydrolase_D Metallo-dependent hydrolases, subgroup D is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=42.14 E-value=4.1e+02 Score=27.44 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=38.8
Q ss_pred HHHHHHc---CCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCc------HHHHHHHHHHcCCeeEeCCCCCCC
Q 014031 257 VQLIHRT---GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK------LVAYTDLADTYGLLKLGGSDYHGR 325 (432)
Q Consensus 257 I~~I~~a---GGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~------~~~~~~lA~~~gLl~tgGSDfHg~ 325 (432)
++...+. |+-.+++|-.... ++.++.|++.|+.. +..|..+ ...+ .-..+.|+.++-|||.+.+
T Consensus 220 v~~l~~~g~L~~~~~~~H~~~l~--~~~~~~l~~~g~~v--~~~P~sn~~lg~g~~p~-~~~~~~Gv~v~lGtD~~~~ 292 (381)
T cd01312 220 IDFLDMLGGLGTRVSFVHCVYAN--LEEAEILASRGASI--ALCPRSNRLLNGGKLDV-SELKKAGIPVSLGTDGLSS 292 (381)
T ss_pred HHHHHHcCCCCCCcEEEECCcCC--HHHHHHHHHcCCeE--EECcchhhhhcCCCcCH-HHHHHCCCcEEEeCCCCcc
Confidence 3444444 4568999986553 45678888888653 2233211 1112 2345779999999997653
No 75
>PRK10027 cryptic adenine deaminase; Provisional
Probab=41.01 E-value=40 Score=37.35 Aligned_cols=62 Identities=15% Similarity=0.127 Sum_probs=43.7
Q ss_pred eeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CC---CHHHHHHHHHhCCCeEeeEEEE
Q 014031 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MS---GIPEAIETARRFGMKIIPGVEI 136 (432)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt--~~---g~~~~~~~a~~~gi~vI~GiEi 136 (432)
=.+|.|+|...| + .+|+++...|...|+..+..-.|.. +. ++..+.+.++..++.+.|.+--
T Consensus 85 GlIDaHvHiess-~-~~p~~~a~aal~~G~TtVv~dPhei~nv~g~~gi~~~l~~a~~~p~~~~~~~ps 151 (588)
T PRK10027 85 GFIDAHLHIESS-M-MTPVTFETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSS 151 (588)
T ss_pred CeEeccccCCcc-c-CCHhHHHHHHHhCceEEEEcCCCCcccCCCHHHHHHHHHHhhhCCCeeEEeecc
Confidence 478999997654 2 4899999999999999998866642 22 4455556666667666655543
No 76
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=39.66 E-value=1.7e+02 Score=28.16 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeCCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 321 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgGSD 321 (432)
+++..++....+|.-.|.-|......+...+..+++.|+..-=+.+|..+.+.+..+....+++...+.+
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~ 138 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVN 138 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEec
Confidence 5788888899999999999998665566788888889988777778877788888888888888777776
No 77
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.58 E-value=82 Score=30.44 Aligned_cols=43 Identities=23% Similarity=0.459 Sum_probs=32.0
Q ss_pred cHHHHHHHHHcCccEEEEecCC----------CcHHHHHHHHHHcCCeeEeCC
Q 014031 278 PAAIIRKLKDVGLHGLEVYRSD----------GKLVAYTDLADTYGLLKLGGS 320 (432)
Q Consensus 278 ~~~li~~L~~~GldGIEv~~~~----------~~~~~~~~lA~~~gLl~tgGS 320 (432)
..+.++.++++|+++||++... ...+.+.++++++||-+++..
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~ 67 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYT 67 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEec
Confidence 4678888899999999996321 135667888999999776643
No 78
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.37 E-value=45 Score=31.97 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEE
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiE 135 (432)
|+..-.+-++.|.+.|.+++. |.+- .+++.+.|++.|+.++||+.
T Consensus 73 GTV~~~~~~~~a~~aGA~Fiv-sP~~----~~~v~~~~~~~~i~~iPG~~ 117 (213)
T PRK06552 73 GTVLDAVTARLAILAGAQFIV-SPSF----NRETAKICNLYQIPYLPGCM 117 (213)
T ss_pred eeCCCHHHHHHHHHcCCCEEE-CCCC----CHHHHHHHHHcCCCEECCcC
Confidence 444445567999999999986 4433 37788999999999999975
No 79
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.31 E-value=98 Score=29.99 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-CcHHHHHHHH
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLA 309 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA 309 (432)
+..+.++.+...+=++|+-.... ..-..+.+.|.+.|+..+|+.... +..+.+.++.
T Consensus 4 ~~~~~~~~l~~~~vi~Vvr~~~~-~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~ 61 (222)
T PRK07114 4 DRIAVLTAMKATGMVPVFYHADV-EVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELV 61 (222)
T ss_pred cHHHHHHHHHhCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHH
Confidence 44578889999999999875521 112357778899999999997654 3344444443
No 80
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=37.66 E-value=48 Score=31.54 Aligned_cols=44 Identities=34% Similarity=0.531 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEE
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (432)
|+..-.+.++.|.+.|.+++. |.|- .++..+.|++.++.++||+
T Consensus 65 GTV~~~e~a~~a~~aGA~Fiv-SP~~----~~~v~~~~~~~~i~~iPG~ 108 (196)
T PF01081_consen 65 GTVLTAEQAEAAIAAGAQFIV-SPGF----DPEVIEYAREYGIPYIPGV 108 (196)
T ss_dssp ES--SHHHHHHHHHHT-SEEE-ESS------HHHHHHHHHHTSEEEEEE
T ss_pred EeccCHHHHHHHHHcCCCEEE-CCCC----CHHHHHHHHHcCCcccCCc
Confidence 555555689999999999875 4443 3778899999999999996
No 81
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=37.04 E-value=94 Score=24.93 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHH
Q 014031 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIET 122 (432)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~ 122 (432)
+.+.+....+.|++.+-|-||++..+..++.+.
T Consensus 7 L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~ 39 (97)
T PF13704_consen 7 LPEWLAHHLALGVDHIYIYDDGSTDGTREILRA 39 (97)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCccHHHHHHh
Confidence 567788899999999999999999998877643
No 82
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=37.01 E-value=60 Score=31.60 Aligned_cols=41 Identities=12% Similarity=0.032 Sum_probs=28.4
Q ss_pred cHHHHHHHHHcCccEEEEecCC------------CcHHHHHHHHHHcCCeeEe
Q 014031 278 PAAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKLG 318 (432)
Q Consensus 278 ~~~li~~L~~~GldGIEv~~~~------------~~~~~~~~lA~~~gLl~tg 318 (432)
.++.++.++++|++|||+.... .....+.+.++++||-+++
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 4567777788888999886432 1245667788899986543
No 83
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.44 E-value=88 Score=30.73 Aligned_cols=64 Identities=8% Similarity=0.110 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCEEEEeCCCC-----CCCcHHHHHHHHHcCccEEEEecCCC-----cHHHHHHHHHHcCCee
Q 014031 253 AEVAVQLIHRTGGLAVLAHPWA-----LKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 316 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~VLAHP~~-----~~~~~~li~~L~~~GldGIEv~~~~~-----~~~~~~~lA~~~gLl~ 316 (432)
+.|.|++.|+.|=.+..-..+. ....+..++..++.|++.||+....- +..++.+.++++||.+
T Consensus 43 l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 6788888888875554443211 01235567788899999999998752 3456778888888754
No 84
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=36.25 E-value=32 Score=34.57 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.9
Q ss_pred eeEcceeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 014031 73 VVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (432)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (432)
.++|||+|- ||+++++.+.+.+.+.|++.
T Consensus 2 pK~eLH~Hl---~Gsi~~~~l~~l~~~~~~~~ 30 (324)
T TIGR01430 2 PKAELHLHL---EGSIRPETLLELAQKNGIPL 30 (324)
T ss_pred CceeeEecc---cCCCCHHHHHHHHHHcCCCC
Confidence 478999997 68899999999999999875
No 85
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=36.04 E-value=77 Score=33.01 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCC
Q 014031 251 PLAEVAVQLIHRTGGLAV--LAHPW 273 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~V--LAHP~ 273 (432)
+....+.+.||+.|+.++ |+|++
T Consensus 83 ~~~~~vt~avH~~G~~i~iQL~H~G 107 (363)
T COG1902 83 PGLKRLTEAVHAHGAKIFIQLWHAG 107 (363)
T ss_pred HHHHHHHHHHHhcCCeEEEEeccCc
Confidence 456789999999999876 57887
No 86
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=36.01 E-value=81 Score=26.71 Aligned_cols=38 Identities=32% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEe
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI 131 (432)
...-+.++.|+++|...|+||+.. ++.+.+.+.++.++
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~------~l~~~~~~~~~~~~ 94 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG------KLLEMAREHGVPVI 94 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc------hHHHHHHHcCCcEE
Confidence 345678999999999999999632 25556666666554
No 87
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=35.88 E-value=1.9e+02 Score=27.87 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=31.4
Q ss_pred HHHHHHHHcC-CEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCc--HHHHHHHHHHcCC
Q 014031 255 VAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK--LVAYTDLADTYGL 314 (432)
Q Consensus 255 eaI~~I~~aG-Gi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~--~~~~~~lA~~~gL 314 (432)
+.++.|++.+ -+++-+|-. ..++...++.+.++|.|-|-+...... .....+.++++|+
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm-~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~ 115 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLM-VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGM 115 (228)
T ss_pred HHHHHHHhcCCCCCEEEEEC-CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCC
Confidence 5566666655 555666654 234555566666666666655443321 2344455555553
No 88
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=35.65 E-value=56 Score=33.50 Aligned_cols=54 Identities=24% Similarity=0.414 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEe---------------cCCCCC------CHHHHHHHHHhCCCeEeeEEEEEE
Q 014031 83 FSDGYLSPSKLVERAHCNGVKVLALT---------------DHDTMS------GIPEAIETARRFGMKIIPGVEIST 138 (432)
Q Consensus 83 ~SDG~~sp~elv~~A~~~Gl~~iaIT---------------DHdt~~------g~~~~~~~a~~~gi~vI~GiEis~ 138 (432)
|.-..+.|++.++.|++.|.+.+.+| |++.+. =+.++.++|++.||++ |+=++.
T Consensus 86 F~p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~--G~Y~S~ 160 (346)
T PF01120_consen 86 FNPTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKF--GLYYSP 160 (346)
T ss_dssp ---TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EE--EEEEES
T ss_pred CCcccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeE--EEEecc
Confidence 34567899999999999999999886 222221 1467889999999988 665554
No 89
>PRK00971 glutaminase; Provisional
Probab=34.87 E-value=5.1e+02 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCccc-cHHHHHHHHh
Q 014031 215 LHVARAMVEAGHVE-NLKQAFARYL 238 (432)
Q Consensus 215 ~hia~aLv~~G~~~-~~~~af~~yl 238 (432)
.-||.+|...|+++ +..++-+-|+
T Consensus 168 ~Ala~~lks~g~i~~d~~~~Ld~Yf 192 (307)
T PRK00971 168 AAIAYLMKSFGNIENDVETVLDTYF 192 (307)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 45777888999887 5666555554
No 90
>PLN03059 beta-galactosidase; Provisional
Probab=34.28 E-value=69 Score=37.01 Aligned_cols=48 Identities=25% Similarity=0.178 Sum_probs=35.6
Q ss_pred CCCCCC--CcHHHHHHHHHcCccEEEEecCC---------------CcHHHHHHHHHHcCCeeEe
Q 014031 271 HPWALK--NPAAIIRKLKDVGLHGLEVYRSD---------------GKLVAYTDLADTYGLLKLG 318 (432)
Q Consensus 271 HP~~~~--~~~~li~~L~~~GldGIEv~~~~---------------~~~~~~~~lA~~~gLl~tg 318 (432)
|++|.. ...+.+..++++|++.||.|-+- .+..++.++|++.||.++.
T Consensus 52 HY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvil 116 (840)
T PLN03059 52 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHL 116 (840)
T ss_pred ccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEe
Confidence 666642 12467888899999999987641 1467899999999998654
No 91
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=33.66 E-value=38 Score=33.90 Aligned_cols=30 Identities=40% Similarity=0.548 Sum_probs=25.9
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcE
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKV 104 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~ 104 (432)
..++|||+|- +|+++++.+.+.+++.|++.
T Consensus 2 lpK~elH~Hl---~Gs~~~~~l~~~~~~~~~~~ 31 (325)
T cd01320 2 LPKAELHLHL---DGSLRPETILELAKKNGITL 31 (325)
T ss_pred CCceEEeecc---cCCCCHHHHHHHHHHhCCCC
Confidence 3589999998 58899999999999998664
No 92
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.42 E-value=2e+02 Score=27.85 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHcCCEEEEeC--CC-CCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeC
Q 014031 251 PLAEVAVQLIHRTGGLAVLAH--PW-ALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGG 319 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VLAH--P~-~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgG 319 (432)
..+++.++....+|.-.|+-| |. .......+++.+.+.|++.+=+.+|..+.+++..++..-..+...|
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~ms 159 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYG 159 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEE
Confidence 477888999999999888888 32 2223456777888999999888888777777777776665444333
No 93
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.05 E-value=2e+02 Score=26.42 Aligned_cols=61 Identities=15% Similarity=0.067 Sum_probs=27.6
Q ss_pred HHHHHHHHc-CCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCC--cHHHHHHHHHHcCCe
Q 014031 255 VAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLL 315 (432)
Q Consensus 255 eaI~~I~~a-GGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~--~~~~~~~lA~~~gLl 315 (432)
+.|+.+++. .++++.+|-.........++.+.++|.++|-+..... ....+.+.++++|+.
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~ 105 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKE 105 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCe
Confidence 444444443 3555555543221112234455555666555544322 233444555555543
No 94
>PRK10657 isoaspartyl dipeptidase; Provisional
Probab=32.59 E-value=1.2e+02 Score=31.04 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.7
Q ss_pred ceeEcceeeCcCC---C--CCCCHHHHHHHHHHcCCcEEEEecCCCCCCH-------HHHHHHHHhCCCeEeeE
Q 014031 72 NVVFELHSHSNFS---D--GYLSPSKLVERAHCNGVKVLALTDHDTMSGI-------PEAIETARRFGMKIIPG 133 (432)
Q Consensus 72 ~~~vDLH~HT~~S---D--G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~-------~~~~~~a~~~gi~vI~G 133 (432)
+=.+|.|+|.... + ...+|+.....|...|...+. |+-...++ .+..+.+.+.|+..+.+
T Consensus 56 PG~id~H~H~~~~~~~~~~~~~t~~~~~~~~~~~GvTTvv--d~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~ 127 (388)
T PRK10657 56 PGFIDQHVHIIGGGGEGGFSTRTPEVQLSDLTEAGITTVV--GLLGTDGITRSMESLLAKARALEEEGISAYMY 127 (388)
T ss_pred ccceeeeeCcccCCCCcccccCCHHHHHHHHHhCCceEEE--CCCCCCCCCCCHHHHHHHHHHHHhhCCEEEEE
Confidence 3479999998632 2 336888899999999998887 55422222 22334445678888844
No 95
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.08 E-value=92 Score=26.67 Aligned_cols=41 Identities=34% Similarity=0.522 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEe-eEE
Q 014031 91 SKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII-PGV 134 (432)
Q Consensus 91 ~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI-~Gi 134 (432)
.++++.+.+.|.+.+.+.-. .--+++.+.+++.|+.++ |++
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS-
T ss_pred HHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCCc
Confidence 46899999999999999776 345778888999999998 543
No 96
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.97 E-value=1.9e+02 Score=28.12 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCC--cHHHHHHHHHHcCCeeEeCCCCCCCCCCCCC
Q 014031 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDG--KLVAYTDLADTYGLLKLGGSDYHGRGGHGES 331 (432)
Q Consensus 254 eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~--~~~~~~~lA~~~gLl~tgGSDfHg~~~~~~~ 331 (432)
.|+.+.|.+++|++|..-+ ...++.|...|..-|-+-.|+- -+++..++-..+|+-+. ||-+.+-.+..
T Consensus 88 ~ei~~~ie~~~~v~vvTts------~Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv---~~~~Lgi~dn~ 158 (238)
T COG3473 88 KEIAQRIEEAKGVPVVTTS------TAVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIV---DFKGLGITDNL 158 (238)
T ss_pred HHHHHHHHhccCCceeech------HHHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEE---EeeccCCcccc
Confidence 5788889999999998755 3578889889999999988873 35677788888887553 56666655566
Q ss_pred Ccccc
Q 014031 332 ELGSV 336 (432)
Q Consensus 332 ~lG~~ 336 (432)
++|+.
T Consensus 159 eigr~ 163 (238)
T COG3473 159 EIGRQ 163 (238)
T ss_pred hhccc
Confidence 78876
No 97
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.56 E-value=1.4e+02 Score=27.68 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=29.7
Q ss_pred HHHH-HHHHHHcCCcEEEEecCCCCCC--HHHHHHHHHhCCCeEeeE
Q 014031 90 PSKL-VERAHCNGVKVLALTDHDTMSG--IPEAIETARRFGMKIIPG 133 (432)
Q Consensus 90 p~el-v~~A~~~Gl~~iaITDHdt~~g--~~~~~~~a~~~gi~vI~G 133 (432)
|... ++.+.+.|.++|.+ |-.... ..++.+.+++.|++++++
T Consensus 64 ~~~~~~~~~~~~Gad~i~v--h~~~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 64 AGEYEAEQAFAAGADIVTV--LGVADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred chHHHHHHHHHcCCCEEEE--eccCCHHHHHHHHHHHHHcCCEEEEE
Confidence 4444 89999999998874 322222 367788888999888663
No 98
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.25 E-value=1e+02 Score=26.41 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCC--CCCCHHHHHHHHHhC
Q 014031 85 DGYLSPSKLVERAHCNGVKVLALTDHD--TMSGIPEAIETARRF 126 (432)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHd--t~~g~~~~~~~a~~~ 126 (432)
-...+++++++.|.+.+-++|+|+==+ +.....++.+..++.
T Consensus 34 G~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 34 GLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 345789999999999999999996432 222344445555544
No 99
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=29.83 E-value=1.4e+02 Score=28.61 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=36.6
Q ss_pred HHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-CcHHHHHHHHHHcC-Cee
Q 014031 258 QLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG-LLK 316 (432)
Q Consensus 258 ~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA~~~g-Ll~ 316 (432)
+.+...+=++|+-.... ..-..+.+.|.+.|+..+|+-... +..+.+.++.+++. +++
T Consensus 3 ~~l~~~~liaVlr~~~~-e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~v 62 (204)
T TIGR01182 3 ELLREAKIVPVIRIDDV-DDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALI 62 (204)
T ss_pred hHHhhCCEEEEEecCCH-HHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEE
Confidence 45666777788865521 112356777888999999996544 44455566666653 443
No 100
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.54 E-value=2e+02 Score=27.76 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCC---CCCH--HHHHHHHHhCCCeEeeE
Q 014031 85 DGYLSPSKLVERAHCNGVKVLALTDHDT---MSGI--PEAIETARRFGMKIIPG 133 (432)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt---~~g~--~~~~~~a~~~gi~vI~G 133 (432)
....++.++++.+.+.|++.+.+||++. ..|+ .-+.+.++..++++|.+
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~ 203 (253)
T PRK02083 150 PTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIAS 203 (253)
T ss_pred ecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEE
Confidence 3456889999999999999999999874 3343 22334444445555443
No 101
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=29.49 E-value=1.4e+02 Score=30.68 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=28.2
Q ss_pred HHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCCeEeeEEEE
Q 014031 95 ERAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEI 136 (432)
Q Consensus 95 ~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vI~GiEi 136 (432)
..+.+.|+..+. ||.+.. ....+.+++.+.|++++.|...
T Consensus 97 ~e~l~~GvTtv~--d~~~~~~~~~~~~~~a~~~~G~R~~~~~~~ 138 (401)
T TIGR02967 97 DELLRNGTTTAL--VFATVHPESVDALFEAALKRGMRMIAGKVL 138 (401)
T ss_pred HHHHhCCCcEEE--eccccCHHHHHHHHHHHHHCCCeEEEeeee
Confidence 567889998876 665443 2345667778889998887754
No 102
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.97 E-value=1.8e+02 Score=25.83 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHhC---CCeEeeE
Q 014031 87 YLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARRF---GMKIIPG 133 (432)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~---gi~vI~G 133 (432)
..+++++++.|.+.+.++|+|+=-.+.. ...++.+..++. +++++.|
T Consensus 40 ~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 40 MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 3579999999999999999998766632 234444555544 4444444
No 103
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.28 E-value=87 Score=30.37 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEE
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGV 134 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~Gi 134 (432)
|+..-.+.++.|.+.|.++|. |.+- .+++.+.|++.++.++||+
T Consensus 76 GTVl~~e~a~~a~~aGA~FiV-sP~~----~~~v~~~~~~~~i~~iPG~ 119 (222)
T PRK07114 76 GSIVDAATAALYIQLGANFIV-TPLF----NPDIAKVCNRRKVPYSPGC 119 (222)
T ss_pred EeCcCHHHHHHHHHcCCCEEE-CCCC----CHHHHHHHHHcCCCEeCCC
Confidence 444444567999999999874 4443 3678889999999999996
No 104
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=27.86 E-value=2.7e+02 Score=27.74 Aligned_cols=111 Identities=14% Similarity=0.272 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCC-------------Cc----HHHHH---HHHHcCccEEEEecCCCcHHHHHHHHHHc
Q 014031 253 AEVAVQLIHRTGGLAVLAHPWALK-------------NP----AAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTY 312 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~VLAHP~~~~-------------~~----~~li~---~L~~~GldGIEv~~~~~~~~~~~~lA~~~ 312 (432)
..+.|+.+.++ |++|.+|-+..- .. +++++ .+.++|.++|.+-... .+....++++.
T Consensus 119 ~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~--~~~~~~i~~~l 195 (264)
T PRK00311 119 VAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVP--AELAKEITEAL 195 (264)
T ss_pred HHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HHHHHHHHHhC
Confidence 34667777655 899999976321 01 13333 3567899998876653 25667788888
Q ss_pred CCeeE---eCCCCCCCCCCCCCCccccc-cChhhHHHhhhcccccchhHHHHHHhhhcCCCCC
Q 014031 313 GLLKL---GGSDYHGRGGHGESELGSVK-LPVLVLNDFLKVARPIWCGAIKEILESYADEPSD 371 (432)
Q Consensus 313 gLl~t---gGSDfHg~~~~~~~~lG~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (432)
.++.+ +|.|+.|.----.+-||-.. .++.-+..|.+. ...+.+.+..|+++...
T Consensus 196 ~iP~igiGaG~~~dgqvlv~~D~lG~~~~~~pkf~k~~~~~-----~~~~~~a~~~y~~~V~~ 253 (264)
T PRK00311 196 SIPTIGIGAGPDCDGQVLVWHDMLGLFSGFKPKFVKRYADL-----AGSIREAVKAYVAEVKS 253 (264)
T ss_pred CCCEEEeccCCCCCceeeeHHhhcCCCCCCCCCchHhHhhh-----HHHHHHHHHHHHHHHhC
Confidence 88765 57777773211112355432 233333333322 24678888888877543
No 105
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=27.78 E-value=5.9e+02 Score=24.96 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCc---H-HHHHHHHHcCccEEEEecCC-----C-c-------HHHHHHHHHHcCCee
Q 014031 254 EVAVQLIHRTGGLAVLAHPWALKNP---A-AIIRKLKDVGLHGLEVYRSD-----G-K-------LVAYTDLADTYGLLK 316 (432)
Q Consensus 254 eeaI~~I~~aGGi~VLAHP~~~~~~---~-~li~~L~~~GldGIEv~~~~-----~-~-------~~~~~~lA~~~gLl~ 316 (432)
..+..+....+=+-+|-||+.-..+ + .+++..++-| -+||+..+. + . ......++++|+...
T Consensus 87 lkv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~-valeisl~~ll~~~g~~Ra~~l~~lr~~lrl~rk~~v~i 165 (229)
T COG1603 87 LKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKG-VALEISLRPLLRSSGYRRARLLSFLRSLLRLARKYDVPI 165 (229)
T ss_pred HHHHHHHHhccCccEEEcccccCCCccccHHHHHHHHhcC-ceEEEehHHhhccchhHHHHHHHHHHHHHHHHHhcCCCE
Confidence 4555666666667899999754322 2 2444444454 579997653 1 1 123456899999999
Q ss_pred EeCCCCCCC
Q 014031 317 LGGSDYHGR 325 (432)
Q Consensus 317 tgGSDfHg~ 325 (432)
+-+||+-.+
T Consensus 166 vvtS~A~s~ 174 (229)
T COG1603 166 VVTSDAESP 174 (229)
T ss_pred EEeCCCCCh
Confidence 999997665
No 106
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.31 E-value=2.5e+02 Score=27.61 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=25.5
Q ss_pred HHHHHHHHHcCccEEEEecC-CCcHHHHHHHHHHcCCe
Q 014031 279 AAIIRKLKDVGLHGLEVYRS-DGKLVAYTDLADTYGLL 315 (432)
Q Consensus 279 ~~li~~L~~~GldGIEv~~~-~~~~~~~~~lA~~~gLl 315 (432)
+..++.++++|++|+=+..- ..+...+.+.|+++|+-
T Consensus 105 e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVK 142 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCc
Confidence 56777888888888766542 23455677778888753
No 107
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=27.20 E-value=28 Score=36.74 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=9.3
Q ss_pred ccEEEEe---cCCC-cHHHHHHH
Q 014031 290 LHGLEVY---RSDG-KLVAYTDL 308 (432)
Q Consensus 290 ldGIEv~---~~~~-~~~~~~~l 308 (432)
.+++||. .|.. ..+++.++
T Consensus 276 ~~~~EV~~i~~P~~e~~~~y~~~ 298 (396)
T PF09692_consen 276 ICGFEVTSIHLPSEEVRQFYKSV 298 (396)
T ss_pred cceeEEEeeeCCCHHHHHHHHhc
Confidence 3556663 3443 24555555
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=27.20 E-value=1.3e+02 Score=27.26 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCC--CCHHHHHHHHHhCCCeEe
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDTM--SGIPEAIETARRFGMKII 131 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~--~g~~~~~~~a~~~gi~vI 131 (432)
...||+|++++|.+...++|+|+=.+-- .-++.+.+++++.|+.-|
T Consensus 48 ~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i 95 (143)
T COG2185 48 LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDI 95 (143)
T ss_pred CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcce
Confidence 3458999999999999999999865432 224566777887765443
No 109
>PRK08203 hydroxydechloroatrazine ethylaminohydrolase; Reviewed
Probab=26.70 E-value=1.6e+02 Score=30.92 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=39.8
Q ss_pred ceeEcceeeCcCC--CCC---------------------CCHHHH-------HHHHHHcCCcEEEEecCCCC------CC
Q 014031 72 NVVFELHSHSNFS--DGY---------------------LSPSKL-------VERAHCNGVKVLALTDHDTM------SG 115 (432)
Q Consensus 72 ~~~vDLH~HT~~S--DG~---------------------~sp~el-------v~~A~~~Gl~~iaITDHdt~------~g 115 (432)
+-.+|.|+|..++ -|. ++++++ +..+.+.|+..+. ||... ..
T Consensus 59 PGlVn~H~H~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~e~l~~G~Ttv~--d~~~~~~~~~~~~ 136 (451)
T PRK08203 59 PGLVNTHHHFYQTLTRALPAAQDAELFPWLTTLYPVWARLTPEMVRVATQTALAELLLSGCTTSS--DHHYLFPNGLRDA 136 (451)
T ss_pred cceEeccccccchhcccccccCCCcHHHHHHHHhHHHHhCCHHHHHHHHHHHHHHHHhcCcCEEE--cceeeccccccch
Confidence 4479999999765 222 233332 3345677888776 55322 22
Q ss_pred HHHHHHHHHhCCCeEeeEEEE
Q 014031 116 IPEAIETARRFGMKIIPGVEI 136 (432)
Q Consensus 116 ~~~~~~~a~~~gi~vI~GiEi 136 (432)
+..+.+++.+.|++++.+...
T Consensus 137 ~~~~~~a~~~~G~R~~~~~~~ 157 (451)
T PRK08203 137 LDDQIEAAREIGMRFHATRGS 157 (451)
T ss_pred HHHHHHHHHHcCCeEEEecce
Confidence 566677788899999877544
No 110
>PRK09228 guanine deaminase; Provisional
Probab=26.51 E-value=1.7e+02 Score=30.82 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=27.7
Q ss_pred HHHHcCCcEEEEecCCCCC--CHHHHHHHHHhCCCeEeeEEEEE
Q 014031 96 RAHCNGVKVLALTDHDTMS--GIPEAIETARRFGMKIIPGVEIS 137 (432)
Q Consensus 96 ~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~~gi~vI~GiEis 137 (432)
.+.+.|...++ ||.+.. ..+.+.+++++.|++++.|.++.
T Consensus 123 e~l~~G~Ttv~--d~~~~~~~~~~~~~~a~~~~GiR~~~~~~~~ 164 (433)
T PRK09228 123 ELLRNGTTTAL--VFGTVHPQSVDALFEAAEARNMRMIAGKVLM 164 (433)
T ss_pred HHHhCCceEEE--eccccCHHHHHHHHHHHHHcCCeEEeeeeee
Confidence 35777887765 775543 34556667778899998887764
No 111
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.46 E-value=93 Score=30.71 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCEEEEeCCC-----CCCCcHHHHHHHHHcCccEEEEecCCC-----cHHHHHHHHHHcCCee
Q 014031 253 AEVAVQLIHRTGGLAVLAHPW-----ALKNPAAIIRKLKDVGLHGLEVYRSDG-----KLVAYTDLADTYGLLK 316 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~VLAHP~-----~~~~~~~li~~L~~~GldGIEv~~~~~-----~~~~~~~lA~~~gLl~ 316 (432)
+.+-|++.|++|=.+..-.-. .....++.++..++.|++.|||....- +...+.+.+++.||.+
T Consensus 56 l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v 129 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKV 129 (244)
T ss_dssp HHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEE
T ss_pred HHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEE
Confidence 788899999888555443221 011236778888999999999998753 2446677788888754
No 112
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=26.22 E-value=1.2e+02 Score=23.48 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=24.1
Q ss_pred HHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCccc
Q 014031 188 LKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHVE 228 (432)
Q Consensus 188 ~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~~ 228 (432)
+.+.+.|++-+..|+.+..|-.-+.+-.+.+++|.++||+.
T Consensus 17 ~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 17 EYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp HHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 44556789888888888876431122234556777888875
No 113
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=25.97 E-value=2.2e+02 Score=27.81 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCC--------------C---cHHHHH---HHHHcCccEEEEecCCCcHHHHHHHHHHc
Q 014031 253 AEVAVQLIHRTGGLAVLAHPWALK--------------N---PAAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTY 312 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~VLAHP~~~~--------------~---~~~li~---~L~~~GldGIEv~~~~~~~~~~~~lA~~~ 312 (432)
..+.|+.+++++ ++|.||-+... . .++.++ .+.++|.|+|-+-.. +.+...+++++.
T Consensus 114 ~~~~i~ai~~a~-i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~i~~~~ 190 (240)
T cd06556 114 HIETLQMLTAAA-VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQITEAL 190 (240)
T ss_pred HHHHHHHHHHcC-CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHhC
Confidence 346688888887 89999986521 0 123443 356789999887654 666677788887
Q ss_pred CCeeE---eCCCCCCC
Q 014031 313 GLLKL---GGSDYHGR 325 (432)
Q Consensus 313 gLl~t---gGSDfHg~ 325 (432)
.++.. +|+++.|.
T Consensus 191 ~~P~~~~gag~~~dgq 206 (240)
T cd06556 191 AIPLAGIGAGSGTDGQ 206 (240)
T ss_pred CCCEEEEecCcCCCce
Confidence 76654 46777663
No 114
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.88 E-value=1.3e+02 Score=29.78 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeEEE
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPGVE 135 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~GiE 135 (432)
+.++.+++.|++.|++.+-|-|= ...-..++.+.+++.|+.+|+-+-
T Consensus 104 ~G~e~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeC
Confidence 46889999999999999999874 223344567788889998876543
No 115
>TIGR01178 ade adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected.
Probab=25.86 E-value=85 Score=34.49 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=40.5
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCC--CCC---HHHHHHHHHhCCCeEeeEE
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDT--MSG---IPEAIETARRFGMKIIPGV 134 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt--~~g---~~~~~~~a~~~gi~vI~Gi 134 (432)
+=.+|.|+|...|- .+|+++.+.+...|...+..-.|.. +.+ +..+.+.+++..+.+..++
T Consensus 50 PG~ID~H~Hi~~~~--~~~~~~~~~al~~GvTtvv~~P~~~~~v~g~~~~~~~~~~a~~~~~d~~~~~ 115 (552)
T TIGR01178 50 PGFIDAHIHIESSM--LTPSEFAKLVLPHGVTTVVSDPHEIANVNGEDGINFMLNNAKKTPLNFYFML 115 (552)
T ss_pred eCeEecccccCCCC--CChhHHHHHHHCCCEEEEEcCCCCCCCCCCHHHHHHHHHHhhcCCcEEEEEC
Confidence 34799999986542 3688888999999998888766652 233 4444555555556654443
No 116
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=25.77 E-value=2e+02 Score=27.49 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecCCCCCC----HHHHHHHHHhCCCeEe
Q 014031 85 DGYLSPSKLVERAHCNGVKVLALTDHDTMSG----IPEAIETARRFGMKII 131 (432)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDHdt~~g----~~~~~~~a~~~gi~vI 131 (432)
++..+++++++.+++.|++.+-|..+..... ..++.+..+..|+.+.
T Consensus 12 ~~~~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 12 FGELPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCCCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEE
Confidence 3678999999999999999999998544433 5667777777877663
No 117
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=25.41 E-value=1.8e+02 Score=27.69 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEe
Q 014031 87 YLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (432)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI 131 (432)
.++.++.++.+++.|++.|-+.. ..-....++.+.+++.||.+.
T Consensus 13 ~~~l~e~~~~~~e~G~~~vEl~~-~~~~~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 13 ELPFLERFAAAAQAGFTGVEYLF-PYDWDAEALKARLAAAGLEQV 56 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEecC-CccCCHHHHHHHHHHcCCeEE
Confidence 36899999999999999999953 112346777888888999864
No 118
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=25.04 E-value=50 Score=32.12 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCC
Q 014031 89 SPSKLVERAHCNGVKVLALTDHDT 112 (432)
Q Consensus 89 sp~elv~~A~~~Gl~~iaITDHdt 112 (432)
.+..++..-+..|+ .|-|||||.
T Consensus 177 dIq~iI~~L~~rgi-GvLITDHNV 199 (243)
T COG1137 177 DIQRIIKHLKDRGI-GVLITDHNV 199 (243)
T ss_pred HHHHHHHHHHhCCc-eEEEccccH
Confidence 36789999999999 567999985
No 119
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=34 Score=37.68 Aligned_cols=17 Identities=6% Similarity=0.305 Sum_probs=11.5
Q ss_pred HHcCCcEEEEecCCCCC
Q 014031 98 HCNGVKVLALTDHDTMS 114 (432)
Q Consensus 98 ~~~Gl~~iaITDHdt~~ 114 (432)
.+.|+.++.+|--+...
T Consensus 239 sq~~isfF~~~hs~sYe 255 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYE 255 (665)
T ss_pred ccCceeEEEeecchHHH
Confidence 66777888877555544
No 120
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=24.64 E-value=4e+02 Score=25.94 Aligned_cols=70 Identities=11% Similarity=-0.079 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCc--cEEEEecCCCcHHHHHHHHHHcCCeeEeCCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGL--HGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 321 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~Gl--dGIEv~~~~~~~~~~~~lA~~~gLl~tgGSD 321 (432)
.+++.|+....+|.-.|.-|......+...++.+++.|+ ..==+.+|..+.+.+..+....+++.....+
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLD 150 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 578889999999999999999865556678888888886 5444566666777777777777776665554
No 121
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.56 E-value=1.3e+02 Score=29.08 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCccEEEEecCC------------CcHHHHHHHHHHcCCeeE
Q 014031 279 AAIIRKLKDVGLHGLEVYRSD------------GKLVAYTDLADTYGLLKL 317 (432)
Q Consensus 279 ~~li~~L~~~GldGIEv~~~~------------~~~~~~~~lA~~~gLl~t 317 (432)
++.++.+.++|+++||+.-.. ...+.+.+.++++||-++
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 455666667777777775321 124556777888888654
No 122
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=24.44 E-value=3.5e+02 Score=27.18 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCHHHHHHHHH-----HcCCEEEEeCCCCCCC--cHHHHHHHHHcCccEEEEecCCC----c---HHHHHHHHHHc-CCe
Q 014031 251 PLAEVAVQLIH-----RTGGLAVLAHPWALKN--PAAIIRKLKDVGLHGLEVYRSDG----K---LVAYTDLADTY-GLL 315 (432)
Q Consensus 251 ~~~eeaI~~I~-----~aGGi~VLAHP~~~~~--~~~li~~L~~~GldGIEv~~~~~----~---~~~~~~lA~~~-gLl 315 (432)
++.+|-.++++ ..|.++|++|-..... .-++.+...+.|.||+=+..|.. + .+++.++|+.- +++
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lP 137 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMA 137 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 45555444433 2355999999975432 22345556778999999987641 1 45678888876 576
Q ss_pred eEeCCCCCCCCCCCCCCccccccChhhHHHhhh
Q 014031 316 KLGGSDYHGRGGHGESELGSVKLPVLVLNDFLK 348 (432)
Q Consensus 316 ~tgGSDfHg~~~~~~~~lG~~~~p~~~~~~~~~ 348 (432)
+.- ||-|. ..| +.++.+.+..+.+
T Consensus 138 v~i---Yn~P~-----~tg-~~l~~~~l~~L~~ 161 (309)
T cd00952 138 IAI---YANPE-----AFK-FDFPRAAWAELAQ 161 (309)
T ss_pred EEE---EcCch-----hcC-CCCCHHHHHHHhc
Confidence 655 55542 222 4566666776653
No 123
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=24.43 E-value=2.8e+02 Score=27.86 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCCC
Q 014031 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 321 (432)
Q Consensus 251 ~~~eeaI~~I~~aG-Gi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGSD 321 (432)
|...++++.|+..| |++++=|.+. ...+++.+.+.|++++.+-+.. +. .+..+.++ +.+.|+-|
T Consensus 215 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~~-dl---~e~k~~~g~~~~i~Gni~ 281 (335)
T cd00717 215 PYLKRIIEEVKKRLPGVPVILFAKG---AGGLLEDLAQLGADVVGLDWRV-DL---DEARKRLGPKVALQGNLD 281 (335)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---CHHHHHHHHhcCCCEEEeCCCC-CH---HHHHHHhCCCeEEEeCCC
Confidence 55689999999987 7777766653 2368899999999998776543 22 23344444 45555444
No 124
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=24.29 E-value=1e+02 Score=32.30 Aligned_cols=46 Identities=20% Similarity=0.334 Sum_probs=35.2
Q ss_pred HHHHHHHcCCcEEEE----ecCCCCCCHHHHHHHHHhCCCeEeeEEEEEE
Q 014031 93 LVERAHCNGVKVLAL----TDHDTMSGIPEAIETARRFGMKIIPGVEIST 138 (432)
Q Consensus 93 lv~~A~~~Gl~~iaI----TDHdt~~g~~~~~~~a~~~gi~vI~GiEis~ 138 (432)
=++.|++.|+|++|+ +|..+...+..++++|+..|++++.-..+..
T Consensus 22 di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~SfD~~~ 71 (386)
T PF03659_consen 22 DIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSFDMNS 71 (386)
T ss_pred HHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEecccC
Confidence 388999999999998 3433334567788888888999988777654
No 125
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=24.14 E-value=61 Score=32.49 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=21.5
Q ss_pred eeEcceeeCcCCCCCCCHHHHHHHHHH
Q 014031 73 VVFELHSHSNFSDGYLSPSKLVERAHC 99 (432)
Q Consensus 73 ~~vDLH~HT~~SDG~~sp~elv~~A~~ 99 (432)
.++|||+|- +|+++|+.+.+.|++
T Consensus 2 PK~eLH~Hl---~Gsi~~~~l~~l~~~ 25 (305)
T cd00443 2 PKVELHAHL---SGSISPETLLELIKK 25 (305)
T ss_pred CceeEEecC---cCCCCHHHHHHHHHH
Confidence 378999998 688999999999988
No 126
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.93 E-value=92 Score=26.25 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHcCCcEEEEecCCC
Q 014031 87 YLSPSKLVERAHCNGVKVLALTDHDT 112 (432)
Q Consensus 87 ~~sp~elv~~A~~~Gl~~iaITDHdt 112 (432)
+-..-+.++.|+++|...|+||+...
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34456789999999999999999654
No 127
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.72 E-value=2.7e+02 Score=31.06 Aligned_cols=87 Identities=16% Similarity=0.093 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCC-CCCCHHHHHHHHHhCCCeEeeEEEEEEeecCCCC--------CCCCcEEEEEEeccC
Q 014031 90 PSKLVERAHCNGVKVLALTDHD-TMSGIPEAIETARRFGMKIIPGVEISTIFCQRGS--------ESEEPVHILAYYSSC 160 (432)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHd-t~~g~~~~~~~a~~~gi~vI~GiEis~~~~~~~~--------~~~~~vHiLgYg~d~ 160 (432)
++..+++|+++|++.+=|-||- .+.+.....+++++.|..+...+-++.....+.. -....+|.|++-..-
T Consensus 98 v~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDta 177 (596)
T PRK14042 98 VRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMA 177 (596)
T ss_pred HHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 4558999999999999999994 4567777888889999988777666654321100 011236777765444
Q ss_pred CCCchHHHHHHHHHHH
Q 014031 161 GPSKYEELENFLANIR 176 (432)
Q Consensus 161 g~~~~~~L~~~l~~ir 176 (432)
|-.....+.+++..++
T Consensus 178 G~l~P~~v~~lv~alk 193 (596)
T PRK14042 178 GLLTPTVTVELYAGLK 193 (596)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 4334445555554444
No 128
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=23.64 E-value=2.8e+02 Score=27.90 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCCCC
Q 014031 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSDY 322 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGSDf 322 (432)
|...++++.|++.|+.+++ |-.. +...+++.+.+.|++++.+-... +.... .+.++ +...||=|-
T Consensus 220 p~~k~i~~~i~~~g~~~il-H~CG--~~~~~~~~l~~~g~d~ls~d~~~-~l~~~---~~~~g~~~~i~Gnidp 286 (340)
T TIGR01463 220 PYQKRLFAYIKEIGGITVL-HICG--FTQPILRDIANNGCFGFSVDMKP-GMDHA---KRVIGGQASLVGNLSP 286 (340)
T ss_pred HHHHHHHHHHHhcCCceEE-EECC--CchhhHHHHHHhCCCEEeecCCC-CHHHH---HHHcCCceEEEecCCh
Confidence 4457889999999888777 6543 23457888889999987754433 22222 22333 555677653
No 129
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.53 E-value=3.2e+02 Score=26.00 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCcEEEEecCCC---------------CCCHHHHHHHHHhCCCeEeeEEEEEEe
Q 014031 91 SKLVERAHCNGVKVLALTDHDT---------------MSGIPEAIETARRFGMKIIPGVEISTI 139 (432)
Q Consensus 91 ~elv~~A~~~Gl~~iaITDHdt---------------~~g~~~~~~~a~~~gi~vI~GiEis~~ 139 (432)
.+.++.|++.|++.|.|.+.-+ +....++.+.+++.|+.+...+|-.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 140 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG 140 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 7789999999999999999755 223344566778889999888876554
No 130
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=23.40 E-value=80 Score=28.44 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=27.4
Q ss_pred HHHHHHcCccEEEEecCCC--------cHHHHHHHHHHcCCeeE
Q 014031 282 IRKLKDVGLHGLEVYRSDG--------KLVAYTDLADTYGLLKL 317 (432)
Q Consensus 282 i~~L~~~GldGIEv~~~~~--------~~~~~~~lA~~~gLl~t 317 (432)
++.++++|+++||+..... ..+.+.++++++|+-++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~ 44 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIA 44 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEE
Confidence 3567889999999987542 24578889999999743
No 131
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=23.36 E-value=1.5e+02 Score=26.22 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHcCCcEEEE--ecCCCCC----------------CHHHHHHHHHhCCCeEeeEEEEE
Q 014031 89 SPSKLVERAHCNGVKVLAL--TDHDTMS----------------GIPEAIETARRFGMKIIPGVEIS 137 (432)
Q Consensus 89 sp~elv~~A~~~Gl~~iaI--TDHdt~~----------------g~~~~~~~a~~~gi~vI~GiEis 137 (432)
.|+++++..++.+++.|.| -+|.-++ -+.++.++|.+.||+++.=+-++
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 4789999999999999999 4554321 23567889999999998776666
No 132
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=23.35 E-value=2.3e+02 Score=28.11 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCCCCC
Q 014031 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSDYH 323 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGSDfH 323 (432)
|...++++.|+..|+ .+.-|.... ...+++.+.+.|++.+-+-+.. +. .+..+.++ ....||=|-+
T Consensus 208 p~~k~i~~~i~~~g~-~~~lH~cG~--~~~~~~~l~~~~~d~~~~d~~~-dl---~~~~~~~g~~~~i~G~id~~ 275 (330)
T cd03465 208 PYLKKVFDAIKALGG-PVIHHNCGD--TAPILELMADLGADVFSIDVTV-DL---AEAKKKVGDKACLMGNLDPI 275 (330)
T ss_pred HHHHHHHHHHHHcCC-ceEEEECCC--chhHHHHHHHhCCCeEeecccC-CH---HHHHHHhCCceEEEeCcChH
Confidence 556899999998855 555588643 3357889999999887764432 22 23444454 7788888765
No 133
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=22.99 E-value=1.3e+02 Score=30.23 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHc--CCeeEeCCCCC
Q 014031 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTY--GLLKLGGSDYH 323 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~--gLl~tgGSDfH 323 (432)
|...++++.|+..|+-.++-|.... ...+++.+.+.|+|++.+-...+ . .+.++++ +..+.||=|-.
T Consensus 220 P~~k~i~~~i~~~g~~~~~lH~cG~--~~~~~~~l~~~g~d~~~~~~~~~-~---~~~~~~~~~~~~l~Gni~~~ 288 (343)
T PF01208_consen 220 PYLKKIIDAIKEAGKDPVILHICGN--TTPILDDLADLGADVLSVDEKVD-L---AEAKRKLGDKIVLMGNIDPV 288 (343)
T ss_dssp HHHHHHHHHHHHHETE-EEEEETTH--G-GGHHHHHTSS-SEEEE-TTS--H---HHHHHHHTTSSEEEEEB-G-
T ss_pred HHHHHHHHHHHHhCCCceEEEECCc--hHHHHHHHHhcCCCEEEEcCCCC-H---HHHHHHhCCCeEEECCCCcc
Confidence 4568999999999984566677532 23478889999999999855442 2 2333343 77788887753
No 134
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=22.49 E-value=1.5e+02 Score=29.90 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=27.8
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEE
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLAL 107 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaI 107 (432)
.-++.+|+|... |+.-++.|+|++..+.=-++|||
T Consensus 118 ~Tr~~vy~qPp~-~~~p~IKE~vR~~I~~A~kVIAI 152 (284)
T PF07894_consen 118 VTRATVYFQPPK-DGQPHIKEVVRRMIQQAQKVIAI 152 (284)
T ss_pred CceEEEEeCCCC-CCCCCHHHHHHHHHHHhcceeEE
Confidence 457899999976 89999998877777777777765
No 135
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=22.44 E-value=4.7e+02 Score=25.23 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeCCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 321 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgGSD 321 (432)
+++..|+....+|.-.|.-|......+...++.+++.|+.+==+.+|..+.+.+..+....+++.....+
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~ 142 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVN 142 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEEC
Confidence 4677788888888888888887655556677778888877555667666666677777777765555554
No 136
>PLN02591 tryptophan synthase
Probab=22.23 E-value=1.5e+02 Score=29.30 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEeeE
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIPG 133 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~G 133 (432)
+..+++++.|++.|++.+-|-|= .+.-..++.+.|++.||.+|+=
T Consensus 93 ~G~~~F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEE
Confidence 45789999999999999999984 2233455677888899888763
No 137
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.19 E-value=53 Score=30.34 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.1
Q ss_pred hhccChHhhhhhhHHHHhhhccceec
Q 014031 404 SLWLTNEERQSAEFEAIKLKLSHVSI 429 (432)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (432)
|.|||++|.-+-=+++|+.+.+...+
T Consensus 146 ~rwlt~~ei~~gv~~~~~~~~~~~~~ 171 (177)
T PRK08309 146 SRWLTHEEISDGVIKAIESDADEHVV 171 (177)
T ss_pred cccCchHHHHHHHHHHHhcCCCeEEE
Confidence 67999999999999999999887654
No 138
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=22.14 E-value=1.8e+02 Score=30.47 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEec--CCC-------------CC------CHHHHHHHHHhCCCeEeeEEEEEE
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTD--HDT-------------MS------GIPEAIETARRFGMKIIPGVEIST 138 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITD--Hdt-------------~~------g~~~~~~~a~~~gi~vI~GiEis~ 138 (432)
-.+.|++.++.|++.|++.+.+|= ||- +. =+.++.++|++.||++ |+-.|.
T Consensus 79 ~~fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~--G~Y~S~ 150 (384)
T smart00812 79 EKFDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKF--GLYHSL 150 (384)
T ss_pred hhCCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeE--EEEcCH
Confidence 458899999999999999998863 332 21 2467888999999888 666665
No 139
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=22.08 E-value=5.9e+02 Score=22.98 Aligned_cols=41 Identities=17% Similarity=0.281 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q 014031 166 EELENFLANIRDGRFLRAKDMILKLNKLKLPLKWEHVAKIA 206 (432)
Q Consensus 166 ~~L~~~l~~ir~~R~~r~~~mv~kL~~~g~~i~~eev~~~~ 206 (432)
..|..+++.++....++..--+++=--.-+|||++||..++
T Consensus 59 ~~l~~Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~VA 99 (137)
T PF10788_consen 59 KSLQNLIESLKNAQKENFELKLEKDILQQMPIDFEDVWAVA 99 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 57888888888877777665555533346899999998765
No 140
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=21.90 E-value=2.3e+02 Score=26.89 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-CcHHHHHHHHHHcC
Q 014031 257 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-GKLVAYTDLADTYG 313 (432)
Q Consensus 257 I~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-~~~~~~~~lA~~~g 313 (432)
...+...+=++|+-... ......+++.+.+.|+..+|+-... +..+.+..++++|+
T Consensus 4 ~~~l~~~~~~~v~r~~~-~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~ 60 (206)
T PRK09140 4 MQPFTKLPLIAILRGIT-PDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALG 60 (206)
T ss_pred hhHHHhCCEEEEEeCCC-HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcC
Confidence 34566667777776552 1122356777888999999997654 34456777777775
No 141
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.89 E-value=1.5e+02 Score=31.10 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.4
Q ss_pred cHHHHHHHHHcCccEEEEec----CCC-c-------HHHHHHHHHHcCCeeEe
Q 014031 278 PAAIIRKLKDVGLHGLEVYR----SDG-K-------LVAYTDLADTYGLLKLG 318 (432)
Q Consensus 278 ~~~li~~L~~~GldGIEv~~----~~~-~-------~~~~~~lA~~~gLl~tg 318 (432)
+.+.+..++++|++|||++. +.. . ...+.+.++++||-+++
T Consensus 34 ~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 34 PVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEE
Confidence 45678888999999999973 221 1 24677889999997543
No 142
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=21.86 E-value=1.6e+02 Score=29.12 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEee
Q 014031 90 PSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKIIP 132 (432)
Q Consensus 90 p~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI~ 132 (432)
.+.+++.|++.|++.+.|-|= ...-..++.+.+++.|+.+|+
T Consensus 108 ~e~F~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 108 INKFIKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNIELIL 149 (263)
T ss_pred HHHHHHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEE
No 143
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.82 E-value=1e+02 Score=25.84 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=22.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCCC
Q 014031 83 FSDGYLSPSKLVERAHCNGVKVLALTDHDT 112 (432)
Q Consensus 83 ~SDG~~sp~elv~~A~~~Gl~~iaITDHdt 112 (432)
+|-.+-..-+.++.|+++|...|+||+...
T Consensus 55 ~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 55 QSGETADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCcCCHHHHHHHHHHHHcCCeEEEEECCCC
Confidence 343334466789999999999999999743
No 144
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=21.74 E-value=2.2e+02 Score=24.50 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCcEEEEecCCCCCCH-HHHHHHHHhCCCeE
Q 014031 89 SPSKLVERAHCNGVKVLALTDHDTMSGI-PEAIETARRFGMKI 130 (432)
Q Consensus 89 sp~elv~~A~~~Gl~~iaITDHdt~~g~-~~~~~~a~~~gi~v 130 (432)
...++++...+.|..+++|--......+ +++.++|++.++++
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPl 102 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPL 102 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCE
Confidence 4678999999999999999444333333 66788999999988
No 145
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=21.68 E-value=7.5e+02 Score=24.06 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeCCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGSD 321 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgGSD 321 (432)
+++..++..-.+|.-.|--|+........+++.+++.|+.+==+.+|.-+...+..+..+.+++.....+
T Consensus 72 ~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVn 141 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVN 141 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeEC
Confidence 4566777777777777777776444556677777777777666677776777777777777765555443
No 146
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.68 E-value=7.7e+02 Score=24.20 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHcCC---EEEEeCCCCC---CCcHHHHHHHH---HcCccEEEE--ecCCCcHHHHHHHHHHcC
Q 014031 250 EPLAEVAVQLIHRTGG---LAVLAHPWAL---KNPAAIIRKLK---DVGLHGLEV--YRSDGKLVAYTDLADTYG 313 (432)
Q Consensus 250 ~~~~eeaI~~I~~aGG---i~VLAHP~~~---~~~~~li~~L~---~~GldGIEv--~~~~~~~~~~~~lA~~~g 313 (432)
+.+..+.|+.|++..+ +.+.+||... .+.+..++.|+ ++|.+.+=. ++.......+.+.|++.|
T Consensus 109 f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g 183 (272)
T TIGR00676 109 FNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAG 183 (272)
T ss_pred CCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcC
Confidence 3467788888888644 3467767531 12233444443 467763221 111123345666666664
No 147
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=21.61 E-value=2.3e+02 Score=29.00 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHcCCEEEE--eCCCC
Q 014031 252 LAEVAVQLIHRTGGLAVL--AHPWA 274 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VL--AHP~~ 274 (432)
...++++.||+.|+.+++ .|+++
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~ 106 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGR 106 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCC
Confidence 456778888888887653 57654
No 148
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=21.36 E-value=1.6e+02 Score=27.58 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=39.7
Q ss_pred ceeEcceeeCcCCCCCCCHHHHHHHHHHcCCcEEEEecCCCC--CCHHHHHHHHHhCCCeEeeEEEEE
Q 014031 72 NVVFELHSHSNFSDGYLSPSKLVERAHCNGVKVLALTDHDTM--SGIPEAIETARRFGMKIIPGVEIS 137 (432)
Q Consensus 72 ~~~vDLH~HT~~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~--~g~~~~~~~a~~~gi~vI~GiEis 137 (432)
.+.+|+|+|-. ..++..+++.+.+.|.+.+.+ |-.. .....+.+.+++.|+++..-++.+
T Consensus 55 ~i~~D~k~~di----~~~~~~~~~~~~~~gad~vtv--h~e~g~~~l~~~i~~~~~~g~~~~v~~~~~ 116 (215)
T PRK13813 55 PVIADLKVADI----PNTNRLICEAVFEAGAWGIIV--HGFTGRDSLKAVVEAAAESGGKVFVVVEMS 116 (215)
T ss_pred CEEEEeecccc----HHHHHHHHHHHHhCCCCEEEE--cCcCCHHHHHHHHHHHHhcCCeEEEEEeCC
Confidence 57789999832 134666778899999997666 4332 113456677788888775555443
No 149
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=21.19 E-value=3.5e+02 Score=27.51 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHcC-CEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCCC
Q 014031 251 PLAEVAVQLIHRTG-GLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 321 (432)
Q Consensus 251 ~~~eeaI~~I~~aG-Gi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGSD 321 (432)
|...++++.|+..| +++|+-|.+. ...+++.+.+.|++++.+-+.. +.. +..+..+ ..+.||=|
T Consensus 224 P~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~is~d~~~-dl~---~~k~~~g~~~~i~Gni~ 290 (346)
T PRK00115 224 PYMKRIVAELKREHPDVPVILFGKG---AGELLEAMAETGADVVGLDWTV-DLA---EARRRVGDKKALQGNLD 290 (346)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC---cHHHHHHHHhcCCCEEeeCCCC-CHH---HHHHHcCCCeEEEeCCC
Confidence 55689999999998 7778855552 3456788899999998876643 222 2333333 66777765
No 150
>PF13594 Amidohydro_5: Amidohydrolase; PDB: 4F0R_A 4F0S_A 1NFG_C 2FVM_A 2FVK_A 2FTY_D 1YBQ_B 1POJ_B 1ONW_A 2AQO_B ....
Probab=21.16 E-value=69 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=17.3
Q ss_pred eeEcceeeCcCC-CCCCCHHHHHHHHHHcCCcE
Q 014031 73 VVFELHSHSNFS-DGYLSPSKLVERAHCNGVKV 104 (432)
Q Consensus 73 ~~vDLH~HT~~S-DG~~sp~elv~~A~~~Gl~~ 104 (432)
=++|+|+|-.+. .....+......+.+.|+..
T Consensus 35 G~ID~H~H~~~~~~~~~~~~~~~~~~l~~GvTT 67 (68)
T PF13594_consen 35 GFIDMHTHLGEPGWQSLDPETEAAAALAGGVTT 67 (68)
T ss_dssp -EEEEEE-TTTTCEGGCTCHHHHHHHHHTTEEE
T ss_pred CeEeeeeccccccccccchhhHHHHHHCcceee
Confidence 379999997643 22233344455555777654
No 151
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.00 E-value=1.9e+02 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHcCCEEE--EeCCCC
Q 014031 251 PLAEVAVQLIHRTGGLAV--LAHPWA 274 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~V--LAHP~~ 274 (432)
+...++++.||+.|+.++ |.|+++
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~ 103 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGR 103 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 456788899999998865 456553
No 152
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=20.99 E-value=1.9e+02 Score=27.48 Aligned_cols=45 Identities=31% Similarity=0.346 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeCC-CCC
Q 014031 254 EVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGS-DYH 323 (432)
Q Consensus 254 eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgGS-DfH 323 (432)
..-++.|.++||++|+-.+.. ..+.++.+.+ -+| ||+.+||. |.|
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~---~~~~~~~~l~-~id---------------------Glll~GG~~Di~ 72 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDA---DDEELDELLD-RID---------------------GLLLPGGGSDID 72 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS-----HHHHHHHHH-CSS---------------------EEEE---SS-T-
T ss_pred HHHHHHHHHcCCEEEEEccCC---CHHHHHHHHh-hcC---------------------EEEEcCCccchh
Confidence 467899999999999875532 2334444332 244 58899999 986
No 153
>PRK06380 metal-dependent hydrolase; Provisional
Probab=20.97 E-value=2.5e+02 Score=29.05 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=38.8
Q ss_pred ceeEcceeeCcCC--CC-------------------CCCHHHH-------HHHHHHcCCcEEEEecCCCCCCHHHHHHHH
Q 014031 72 NVVFELHSHSNFS--DG-------------------YLSPSKL-------VERAHCNGVKVLALTDHDTMSGIPEAIETA 123 (432)
Q Consensus 72 ~~~vDLH~HT~~S--DG-------------------~~sp~el-------v~~A~~~Gl~~iaITDHdt~~g~~~~~~~a 123 (432)
+=.+|.|+|...+ .| .++++++ +..+.+.|...+ .|+.. ....+.+++
T Consensus 54 PG~Vd~H~Hl~~~~~rg~~~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~l~~G~Tt~--~d~~~--~~~~~~~a~ 129 (418)
T PRK06380 54 PGLINTHAHVGMTASKGLFDDVDLEEFLMKTFKYDSKRTREGIYNSAKLGMYEMINSGITAF--VDLYY--SEDIIAKAA 129 (418)
T ss_pred cCEEeeccCCCccccCCcccCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHhcCCeEE--Ecccc--ChHHHHHHH
Confidence 4479999998765 22 1355543 345577888865 46532 234455667
Q ss_pred HhCCCeEeeEEEE
Q 014031 124 RRFGMKIIPGVEI 136 (432)
Q Consensus 124 ~~~gi~vI~GiEi 136 (432)
++.|++.+.|...
T Consensus 130 ~~~G~r~~~~~~~ 142 (418)
T PRK06380 130 EELGIRAFLSWAV 142 (418)
T ss_pred HHhCCeEEEeccc
Confidence 7889988887654
No 154
>PF07643 DUF1598: Protein of unknown function (DUF1598); InterPro: IPR011487 This is a family of Rhodopirellula baltica hypothetical proteins of about 500 amino acids in length.
Probab=20.94 E-value=1.3e+02 Score=24.85 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=12.6
Q ss_pred CChHHHHHHHHHcCcc
Q 014031 212 PGRLHVARAMVEAGHV 227 (432)
Q Consensus 212 ~gr~hia~aLv~~G~~ 227 (432)
+...|+|+.||++.|-
T Consensus 51 p~~sh~ArvLVeADyr 66 (84)
T PF07643_consen 51 PADSHFARVLVEADYR 66 (84)
T ss_pred CCccHHHHHHHHhhhH
Confidence 4567999999997653
No 155
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=20.93 E-value=3.5e+02 Score=27.28 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHc-CCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcC--CeeEeCCC
Q 014031 251 PLAEVAVQLIHRT-GGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYG--LLKLGGSD 321 (432)
Q Consensus 251 ~~~eeaI~~I~~a-GGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~g--Ll~tgGSD 321 (432)
|...++++.|++. |+++|+=|.+. ...+++.+.+.|++++.+-+.. +. .+..+.++ +.+.||=|
T Consensus 218 p~~k~i~~~i~~~~~~~~ilh~cg~---~~~~~~~~~~~~~~~~s~d~~~-dl---~e~~~~~~~~~~i~Gni~ 284 (338)
T TIGR01464 218 PYLKKIIEEVKARLPNVPVILFAKG---AGHLLEELAETGADVVGLDWTV-DL---KEARKRVGPGVAIQGNLD 284 (338)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCC---cHHHHHHHHhcCCCEEEeCCCC-CH---HHHHHHhCCCeeEEeCCC
Confidence 5568899999987 78777766542 3457888999999998776543 22 23333333 56777765
No 156
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.93 E-value=1.4e+02 Score=24.87 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEecC
Q 014031 85 DGYLSPSKLVERAHCNGVKVLALTDH 110 (432)
Q Consensus 85 DG~~sp~elv~~A~~~Gl~~iaITDH 110 (432)
|...+++++++.+.+...+.|+||=+
T Consensus 35 d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 35 DANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp ESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred CCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 45556799999999999999999764
No 157
>PRK08005 epimerase; Validated
Probab=20.70 E-value=5.8e+02 Score=24.45 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCcHHHHHHHHHHcCCeeEeCC
Q 014031 252 LAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGKLVAYTDLADTYGLLKLGGS 320 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~~~~~~~lA~~~gLl~tgGS 320 (432)
.++..|+.+..+|.-.|.-|......+...++.+++.|+..==+.+|..+...+..+....+++.....
T Consensus 69 ~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV 137 (210)
T PRK08005 69 SPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTS 137 (210)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEe
Confidence 467778888888888888888755455667777888887655556666566666666666666555554
No 158
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.66 E-value=2.3e+02 Score=27.22 Aligned_cols=45 Identities=13% Similarity=-0.018 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHhCCCeEe
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDTMSGIPEAIETARRFGMKII 131 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt~~g~~~~~~~a~~~gi~vI 131 (432)
...+.++.++.+++.|++.|-|... ......++.+.+++.||.+.
T Consensus 13 ~~~~l~~~l~~~a~~Gf~~VEl~~~-~~~~~~~~~~~l~~~gl~~~ 57 (258)
T PRK09997 13 GEYDFLARFEKAAQCGFRGVEFMFP-YDYDIEELKQVLASNKLEHT 57 (258)
T ss_pred cCCCHHHHHHHHHHhCCCEEEEcCC-CCCCHHHHHHHHHHcCCcEE
Confidence 4457999999999999999998642 22356778888888999873
No 159
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.64 E-value=1.4e+02 Score=28.75 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEecCCC--------C--CCHHHHHHHHHhCCCeEe
Q 014031 86 GYLSPSKLVERAHCNGVKVLALTDHDT--------M--SGIPEAIETARRFGMKII 131 (432)
Q Consensus 86 G~~sp~elv~~A~~~Gl~~iaITDHdt--------~--~g~~~~~~~a~~~gi~vI 131 (432)
..++.++.++.|++.|++.|=++=++. . ....++.+.+++.||.+-
T Consensus 14 ~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 14 KHLSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred CCCCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 347899999999999999998863221 1 124556777788898764
No 160
>PRK12677 xylose isomerase; Provisional
Probab=20.59 E-value=2.1e+02 Score=29.93 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC-----CC-----HHHHHHHHHhCCCeE
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTM-----SG-----IPEAIETARRFGMKI 130 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~-----~g-----~~~~~~~a~~~gi~v 130 (432)
+++++.++.+++.|+++|-+.+-+.. .. ..++.+++++.||.+
T Consensus 31 ~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v 83 (384)
T PRK12677 31 LDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVV 83 (384)
T ss_pred CCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCee
Confidence 57999999999999999999653322 11 455667777888874
No 161
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=20.37 E-value=2.5e+02 Score=28.39 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=12.6
Q ss_pred HHHHcCCe-eEeCCCCCCCCCC
Q 014031 308 LADTYGLL-KLGGSDYHGRGGH 328 (432)
Q Consensus 308 lA~~~gLl-~tgGSDfHg~~~~ 328 (432)
+++..|.- +.-||||-|...+
T Consensus 250 i~~l~G~dhVgiGsDfdg~~~~ 271 (309)
T cd01301 250 IVDLIGIDHVGLGSDFDGIGGT 271 (309)
T ss_pred HHHhcCCCeEEECcccCCCCCC
Confidence 34444442 5569999886543
No 162
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.32 E-value=3.8e+02 Score=26.37 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCC-----Cc------H---HHHHHHHHHcCCee
Q 014031 251 PLAEVAVQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSD-----GK------L---VAYTDLADTYGLLK 316 (432)
Q Consensus 251 ~~~eeaI~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~-----~~------~---~~~~~lA~~~gLl~ 316 (432)
-.+.++|+.++.+|-.+.|- .....+.++.-++.|.|.||.|... .. . ....++|.+.||-+
T Consensus 110 ~~l~~~i~~l~~~gI~VSLF----iDPd~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~V 185 (234)
T cd00003 110 EKLKPIIERLKDAGIRVSLF----IDPDPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAKLARELGLGV 185 (234)
T ss_pred HHHHHHHHHHHHCCCEEEEE----eCCCHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence 35678999999999876551 2222456777888999999998853 11 1 12346789999999
Q ss_pred EeCCCCCC
Q 014031 317 LGGSDYHG 324 (432)
Q Consensus 317 tgGSDfHg 324 (432)
-+|-|-..
T Consensus 186 nAGHgLny 193 (234)
T cd00003 186 NAGHGLNY 193 (234)
T ss_pred ecCCCCCH
Confidence 99977654
No 163
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.25 E-value=2.4e+02 Score=28.66 Aligned_cols=18 Identities=11% Similarity=-0.066 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHcCCEEEE
Q 014031 252 LAEVAVQLIHRTGGLAVL 269 (432)
Q Consensus 252 ~~eeaI~~I~~aGGi~VL 269 (432)
.+..+++.||+.|+.+++
T Consensus 83 ~~~~l~~~vh~~G~~~~~ 100 (338)
T cd04733 83 AFREWAAAAKANGALIWA 100 (338)
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 345667777777776654
No 164
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.21 E-value=3.4e+02 Score=22.68 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEecCCCCC--CHHHHHHHHHh
Q 014031 83 FSDGYLSPSKLVERAHCNGVKVLALTDHDTMS--GIPEAIETARR 125 (432)
Q Consensus 83 ~SDG~~sp~elv~~A~~~Gl~~iaITDHdt~~--g~~~~~~~a~~ 125 (432)
+.....+++++++.+.+...+.|+||=.++.. ...++.+..++
T Consensus 32 ~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~ 76 (119)
T cd02067 32 DLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKE 76 (119)
T ss_pred ECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHH
Confidence 33566889999999999999999998654332 23344444444
No 165
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=20.18 E-value=5.2e+02 Score=25.55 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=65.7
Q ss_pred HHHHHHHHHHcCCEEEEeCCCCCC-------------Cc----HHHHH---HHHHcCccEEEEecCCCcHHHHHHHHHHc
Q 014031 253 AEVAVQLIHRTGGLAVLAHPWALK-------------NP----AAIIR---KLKDVGLHGLEVYRSDGKLVAYTDLADTY 312 (432)
Q Consensus 253 ~eeaI~~I~~aGGi~VLAHP~~~~-------------~~----~~li~---~L~~~GldGIEv~~~~~~~~~~~~lA~~~ 312 (432)
..+.|+.+.++| ++|.+|-+..- .. +++++ .+.++|.++|.+-... .+...+++++.
T Consensus 116 ~~~~I~al~~ag-ipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~--~~~~~~i~~~v 192 (254)
T cd06557 116 VAETIRALVDAG-IPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVP--AELAKEITEAL 192 (254)
T ss_pred HHHHHHHHHHcC-CCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC--HHHHHHHHHhC
Confidence 345666666554 89999976321 11 22333 3567899998886653 35777888998
Q ss_pred CCeeE---eCCCCCCCCCCCCCCccccc-cChhhHHHhhhcccccchhHHHHHHhhhcCCCC
Q 014031 313 GLLKL---GGSDYHGRGGHGESELGSVK-LPVLVLNDFLKVARPIWCGAIKEILESYADEPS 370 (432)
Q Consensus 313 gLl~t---gGSDfHg~~~~~~~~lG~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (432)
.++.+ +|+++.|.----.+-||-.. .++.-+..|.+. ...+.+.+..|+++..
T Consensus 193 ~iP~igiGaG~~~dgqvlv~~D~lG~~~~~~p~f~k~~~~~-----~~~~~~a~~~y~~~v~ 249 (254)
T cd06557 193 SIPTIGIGAGPDCDGQVLVWHDMLGLSPGFKPKFVKRYADL-----GELIREAVKAYVEEVK 249 (254)
T ss_pred CCCEEEeccCCCCCceeehHHhhcCCCCCCCCCcHHHHhhh-----HHHHHHHHHHHHHHHh
Confidence 88877 78888874211122355443 233334444432 2367777888877653
No 166
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=20.09 E-value=3.9e+02 Score=25.12 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHcCCcEEEEecCCCC-CC----HHHHHHHHHhCCCeEeeE
Q 014031 88 LSPSKLVERAHCNGVKVLALTDHDTM-SG----IPEAIETARRFGMKIIPG 133 (432)
Q Consensus 88 ~sp~elv~~A~~~Gl~~iaITDHdt~-~g----~~~~~~~a~~~gi~vI~G 133 (432)
.+|.++++...+.|++.+-|+|=|.. .+ +..+.+.++..+++++.|
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~ 80 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVG 80 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEc
Confidence 48999999999999999999998765 23 333444445556666554
No 167
>PRK12356 glutaminase; Reviewed
Probab=20.08 E-value=9.6e+02 Score=24.67 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHcCcc-ccHHHHHHHHhh
Q 014031 178 GRFLRAKDMILKLNKLKLPLKWEHVAKIAGKGVAPGRLHVARAMVEAGHV-ENLKQAFARYLY 239 (432)
Q Consensus 178 ~R~~r~~~mv~kL~~~g~~i~~eev~~~~g~~~~~gr~hia~aLv~~G~~-~~~~~af~~yl~ 239 (432)
.|.++...++.++....+.++ +..........--..-||.+|...|++ .+..++-+-|+.
T Consensus 137 ~~~~~il~~~~~~ag~~l~~d--e~v~~SE~~t~~RNrAlA~~lks~g~i~~d~~~~Ld~Yf~ 197 (319)
T PRK12356 137 ERWQRILDGQQRFAGRELALS--DEVYQSEQTTNFHNRAIAWLLYSYGRLYCDPMEACDVYTR 197 (319)
T ss_pred HHHHHHHHHHHHHhCCCCccC--HHHHHHHHhhhHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 344555555555554334444 322111111011134577788899988 456666665553
No 168
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=20.07 E-value=3e+02 Score=26.15 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=37.3
Q ss_pred HHHHHHcCCEEEEeCCCCCCCcHHHHHHHHHcCccEEEEecCCCc-HHHHHHHHHHc-CCeeEeC
Q 014031 257 VQLIHRTGGLAVLAHPWALKNPAAIIRKLKDVGLHGLEVYRSDGK-LVAYTDLADTY-GLLKLGG 319 (432)
Q Consensus 257 I~~I~~aGGi~VLAHP~~~~~~~~li~~L~~~GldGIEv~~~~~~-~~~~~~lA~~~-gLl~tgG 319 (432)
.+.+.+.+=++|+-... ...-..+.+.|.+.|+..||+..+... .+.+..+.+++ ++++-+|
T Consensus 2 ~~~l~~~~iiaVir~~~-~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAG 65 (196)
T PF01081_consen 2 EERLKENKIIAVIRGDD-PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAG 65 (196)
T ss_dssp HHHHHHHSEEEEETTSS-GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHhhCCEEEEEEcCC-HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEE
Confidence 45677888888886553 222356788899999999999776533 34444455444 3443333
Done!