Query 014032
Match_columns 432
No_of_seqs 381 out of 1382
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1043 Ca2+-binding transmemb 100.0 8.3E-45 1.8E-49 376.8 11.3 214 9-223 248-465 (499)
2 PF07766 LETM1: LETM1-like pro 100.0 7.6E-38 1.6E-42 307.7 10.9 134 17-150 134-268 (268)
3 KOG4263 Putative receptor CCR1 99.6 1.4E-15 3.1E-20 145.8 9.9 133 15-153 149-289 (299)
4 cd05022 S-100A13 S-100A13: S-1 99.1 1.3E-10 2.7E-15 97.2 6.9 66 356-421 8-76 (89)
5 COG5126 FRQ1 Ca2+-binding prot 99.1 3.9E-10 8.6E-15 103.6 9.9 84 337-421 74-157 (160)
6 PF13499 EF-hand_7: EF-hand do 99.1 3.3E-10 7.1E-15 87.5 7.4 62 357-418 1-66 (66)
7 KOG0027 Calmodulin and related 99.1 6E-10 1.3E-14 100.4 9.8 85 336-420 62-149 (151)
8 cd05027 S-100B S-100B: S-100B 99.0 7.5E-10 1.6E-14 92.1 7.8 66 356-421 8-80 (88)
9 cd05025 S-100A1 S-100A1: S-100 98.9 3.3E-09 7.1E-14 88.1 8.3 70 352-421 5-81 (92)
10 KOG0027 Calmodulin and related 98.9 3.5E-09 7.6E-14 95.4 8.5 68 355-422 7-74 (151)
11 cd05031 S-100A10_like S-100A10 98.9 3.5E-09 7.5E-14 88.4 7.7 67 355-421 7-80 (94)
12 cd05029 S-100A6 S-100A6: S-100 98.9 4.4E-09 9.4E-14 87.5 7.0 65 357-421 11-80 (88)
13 cd05026 S-100Z S-100Z: S-100Z 98.9 6.4E-09 1.4E-13 87.1 7.8 66 356-421 10-82 (93)
14 cd00052 EH Eps15 homology doma 98.8 1.7E-08 3.8E-13 77.3 7.2 60 359-420 2-61 (67)
15 KOG0028 Ca2+-binding protein ( 98.8 3.3E-08 7.2E-13 90.4 9.6 84 337-421 88-171 (172)
16 cd00213 S-100 S-100: S-100 dom 98.7 3.5E-08 7.6E-13 80.8 8.0 67 355-421 7-80 (88)
17 smart00027 EH Eps15 homology d 98.7 4.2E-08 9E-13 82.1 8.2 65 356-422 10-74 (96)
18 cd00051 EFh EF-hand, calcium b 98.6 1.5E-07 3.2E-12 68.7 7.4 61 358-418 2-62 (63)
19 PF14658 EF-hand_9: EF-hand do 98.6 8.5E-08 1.8E-12 75.9 6.3 60 361-420 3-64 (66)
20 PF13833 EF-hand_8: EF-hand do 98.6 1.1E-07 2.3E-12 71.0 6.3 51 369-419 1-52 (54)
21 COG5126 FRQ1 Ca2+-binding prot 98.6 1.1E-07 2.3E-12 87.6 7.4 67 355-422 19-85 (160)
22 cd05023 S-100A11 S-100A11: S-1 98.6 2E-07 4.4E-12 77.7 8.0 66 356-421 9-81 (89)
23 KOG0034 Ca2+/calmodulin-depend 98.5 4.3E-07 9.2E-12 85.7 9.9 69 355-423 103-178 (187)
24 PTZ00183 centrin; Provisional 98.5 3.9E-07 8.5E-12 80.6 8.8 67 355-421 89-155 (158)
25 KOG0028 Ca2+-binding protein ( 98.5 1.7E-07 3.8E-12 85.8 6.3 76 354-429 31-107 (172)
26 KOG0030 Myosin essential light 98.5 6.1E-07 1.3E-11 80.6 8.1 85 334-419 64-150 (152)
27 PTZ00184 calmodulin; Provision 98.5 6.5E-07 1.4E-11 77.9 8.3 65 355-419 83-147 (149)
28 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.1E-06 2.5E-11 76.8 7.8 60 355-418 47-106 (116)
29 PTZ00183 centrin; Provisional 98.4 1.7E-06 3.7E-11 76.5 8.5 65 356-420 17-81 (158)
30 cd05030 calgranulins Calgranul 98.3 1.3E-06 2.8E-11 72.5 6.5 65 357-421 9-80 (88)
31 PTZ00184 calmodulin; Provision 98.3 2.3E-06 5.1E-11 74.5 8.2 65 356-420 11-75 (149)
32 KOG0031 Myosin regulatory ligh 98.3 6.8E-06 1.5E-10 75.1 10.0 88 335-423 81-168 (171)
33 KOG0030 Myosin essential light 98.2 2.6E-06 5.7E-11 76.5 5.6 69 356-424 11-81 (152)
34 KOG0037 Ca2+-binding protein, 98.1 2E-05 4.3E-10 75.6 9.4 83 338-420 94-188 (221)
35 KOG0041 Predicted Ca2+-binding 97.9 2.5E-05 5.4E-10 74.2 7.5 64 357-420 100-163 (244)
36 KOG0044 Ca2+ sensor (EF-Hand s 97.9 1.7E-05 3.7E-10 75.3 6.0 68 353-420 97-175 (193)
37 PLN02964 phosphatidylserine de 97.8 3.8E-05 8.3E-10 84.5 7.9 64 358-421 181-244 (644)
38 KOG0031 Myosin regulatory ligh 97.8 9.8E-05 2.1E-09 67.6 8.6 59 356-418 32-90 (171)
39 KOG0044 Ca2+ sensor (EF-Hand s 97.7 6.5E-05 1.4E-09 71.4 6.8 89 332-421 40-129 (193)
40 PLN02964 phosphatidylserine de 97.7 8.7E-05 1.9E-09 81.7 8.3 67 356-426 143-213 (644)
41 PF00036 EF-hand_1: EF hand; 97.7 4.1E-05 8.8E-10 51.1 3.6 27 358-384 2-28 (29)
42 KOG0038 Ca2+-binding kinase in 97.7 0.00013 2.8E-09 66.5 7.5 85 338-423 91-180 (189)
43 KOG0377 Protein serine/threoni 97.7 9.5E-05 2.1E-09 77.2 7.6 69 356-424 547-619 (631)
44 KOG0036 Predicted mitochondria 97.6 0.00021 4.6E-09 74.2 8.2 72 353-424 79-150 (463)
45 PF13405 EF-hand_6: EF-hand do 97.6 9.2E-05 2E-09 49.5 3.6 30 357-386 1-31 (31)
46 PRK12309 transaldolase/EF-hand 97.6 0.00032 7E-09 73.3 9.4 71 336-420 315-385 (391)
47 PF00036 EF-hand_1: EF hand; 97.5 0.0001 2.3E-09 49.1 3.4 29 393-421 1-29 (29)
48 cd05024 S-100A10 S-100A10: A s 97.5 0.00049 1.1E-08 58.0 7.8 64 357-421 9-77 (91)
49 KOG0036 Predicted mitochondria 97.3 0.00077 1.7E-08 70.1 8.1 68 353-420 11-79 (463)
50 PF12763 EF-hand_4: Cytoskelet 97.0 0.0025 5.5E-08 54.9 7.2 64 355-421 9-72 (104)
51 PF02037 SAP: SAP domain; Int 96.8 0.002 4.4E-08 44.8 4.3 34 101-134 2-35 (35)
52 KOG1043 Ca2+-binding transmemb 96.7 0.017 3.8E-07 61.8 12.6 265 131-422 44-328 (499)
53 PF13202 EF-hand_5: EF hand; P 96.7 0.0019 4E-08 41.6 3.1 23 359-381 2-24 (25)
54 PF10591 SPARC_Ca_bdg: Secrete 96.6 0.0019 4E-08 56.3 3.3 60 355-416 53-112 (113)
55 KOG0040 Ca2+-binding actin-bun 96.5 0.011 2.4E-07 69.4 9.7 87 335-421 2223-2325(2399)
56 PF13202 EF-hand_5: EF hand; P 96.5 0.0035 7.5E-08 40.3 3.3 25 394-418 1-25 (25)
57 KOG0037 Ca2+-binding protein, 96.4 0.0097 2.1E-07 57.4 7.4 63 357-419 58-121 (221)
58 KOG0046 Ca2+-binding actin-bun 96.4 0.0071 1.5E-07 64.7 6.9 65 357-422 20-87 (627)
59 smart00513 SAP Putative DNA-bi 96.3 0.008 1.7E-07 41.6 4.3 35 100-134 1-35 (35)
60 KOG4223 Reticulocalbin, calume 95.9 0.012 2.5E-07 59.8 5.2 67 359-425 166-233 (325)
61 PF14788 EF-hand_10: EF hand; 95.8 0.021 4.6E-07 43.2 5.0 49 372-420 1-49 (51)
62 PF13405 EF-hand_6: EF-hand do 95.8 0.012 2.6E-07 39.2 3.3 27 393-419 1-27 (31)
63 KOG4065 Uncharacterized conser 95.7 0.022 4.7E-07 50.3 5.6 57 361-417 72-142 (144)
64 KOG0034 Ca2+/calmodulin-depend 95.2 0.053 1.1E-06 51.5 6.7 64 359-422 69-134 (187)
65 smart00054 EFh EF-hand, calciu 95.2 0.026 5.7E-07 34.4 3.2 27 358-384 2-28 (29)
66 KOG4223 Reticulocalbin, calume 94.7 0.038 8.3E-07 56.1 4.7 67 354-420 75-141 (325)
67 smart00054 EFh EF-hand, calciu 94.2 0.055 1.2E-06 32.8 3.0 27 394-420 2-28 (29)
68 PF13833 EF-hand_8: EF-hand do 94.0 0.14 3E-06 37.8 5.2 44 339-384 9-53 (54)
69 KOG0042 Glycerol-3-phosphate d 93.7 0.093 2E-06 57.1 5.2 71 357-427 594-664 (680)
70 KOG4251 Calcium binding protei 93.6 0.053 1.2E-06 53.5 3.0 66 355-420 100-168 (362)
71 PF13499 EF-hand_7: EF-hand do 93.6 0.19 4.2E-06 38.3 5.5 45 338-382 20-66 (66)
72 PF02037 SAP: SAP domain; Int 92.8 0.2 4.3E-06 34.8 4.1 35 51-85 1-35 (35)
73 smart00513 SAP Putative DNA-bi 91.8 0.31 6.7E-06 33.6 4.0 34 51-84 1-34 (35)
74 PF09279 EF-hand_like: Phospho 91.5 0.49 1.1E-05 38.2 5.6 63 357-420 1-69 (83)
75 KOG1029 Endocytic adaptor prot 89.7 0.33 7.1E-06 54.5 3.9 62 357-420 196-257 (1118)
76 KOG2643 Ca2+ binding protein, 89.3 0.24 5.3E-06 52.4 2.5 67 356-422 233-316 (489)
77 cd05022 S-100A13 S-100A13: S-1 88.9 1.2 2.6E-05 37.3 5.9 47 338-385 29-76 (89)
78 KOG0377 Protein serine/threoni 88.8 1.9 4.2E-05 46.0 8.5 66 355-420 463-575 (631)
79 PF05042 Caleosin: Caleosin re 86.7 2.1 4.6E-05 40.3 6.7 65 358-422 9-126 (174)
80 KOG1955 Ral-GTPase effector RA 86.4 1.4 3.1E-05 47.5 6.0 64 356-421 231-294 (737)
81 KOG2243 Ca2+ release channel ( 85.8 4.9 0.00011 48.1 10.1 59 360-419 4061-4119(5019)
82 KOG4666 Predicted phosphate ac 84.5 1.1 2.3E-05 46.1 3.9 65 356-421 296-360 (412)
83 KOG2562 Protein phosphatase 2 84.1 1.8 3.9E-05 46.3 5.5 64 359-425 281-348 (493)
84 cd05026 S-100Z S-100Z: S-100Z 82.2 2 4.4E-05 35.7 4.1 31 355-385 52-82 (93)
85 KOG2643 Ca2+ binding protein, 81.4 0.97 2.1E-05 48.0 2.3 52 369-420 401-453 (489)
86 KOG0035 Ca2+-binding actin-bun 80.4 4.5 9.7E-05 46.6 7.2 78 343-420 733-816 (890)
87 cd05029 S-100A6 S-100A6: S-100 79.4 2.9 6.2E-05 34.7 4.1 31 355-385 50-80 (88)
88 KOG3866 DNA-binding protein of 79.3 2.5 5.3E-05 43.3 4.3 63 359-421 247-325 (442)
89 PF14788 EF-hand_10: EF hand; 79.3 6 0.00013 30.1 5.3 46 338-385 5-50 (51)
90 cd00252 SPARC_EC SPARC_EC; ext 79.0 3 6.5E-05 36.6 4.3 31 388-418 44-74 (116)
91 cd00051 EFh EF-hand, calcium b 78.5 2.2 4.8E-05 30.1 2.8 29 394-422 2-30 (63)
92 cd05023 S-100A11 S-100A11: S-1 78.3 3 6.5E-05 34.7 3.9 30 356-385 52-81 (89)
93 cd05030 calgranulins Calgranul 77.5 3.4 7.3E-05 34.1 3.9 31 355-385 50-80 (88)
94 KOG3555 Ca2+-binding proteogly 77.1 3 6.6E-05 43.2 4.2 61 356-420 250-310 (434)
95 cd05031 S-100A10_like S-100A10 75.7 3.6 7.7E-05 34.0 3.6 32 355-386 50-81 (94)
96 KOG2562 Protein phosphatase 2 75.4 4 8.6E-05 43.8 4.7 60 357-416 352-420 (493)
97 KOG4251 Calcium binding protei 75.0 5.8 0.00013 39.6 5.4 61 358-418 283-343 (362)
98 cd05025 S-100A1 S-100A1: S-100 74.7 4.6 0.0001 33.1 4.1 31 355-385 51-81 (92)
99 cd00052 EH Eps15 homology doma 74.6 5.1 0.00011 29.9 4.0 31 355-385 32-62 (67)
100 smart00027 EH Eps15 homology d 74.0 5.4 0.00012 33.0 4.4 37 356-392 44-85 (96)
101 KOG0038 Ca2+-binding kinase in 71.8 4.3 9.3E-05 37.6 3.4 81 339-422 56-138 (189)
102 cd05027 S-100B S-100B: S-100B 71.2 10 0.00022 31.4 5.4 30 356-385 51-80 (88)
103 KOG3449 60S acidic ribosomal p 71.2 16 0.00036 32.0 6.7 55 358-417 3-57 (112)
104 PF08726 EFhand_Ca_insen: Ca2+ 71.1 2.7 5.8E-05 33.8 1.7 53 356-416 6-65 (69)
105 KOG0169 Phosphoinositide-speci 69.5 9.4 0.0002 43.2 6.1 69 353-421 133-201 (746)
106 cd00213 S-100 S-100: S-100 dom 67.1 8.6 0.00019 31.0 4.0 31 355-385 50-80 (88)
107 TIGR00578 ku70 ATP-dependent D 64.3 10 0.00022 42.0 5.2 40 96-135 544-584 (584)
108 KOG0751 Mitochondrial aspartat 63.8 11 0.00025 40.9 5.1 34 352-385 104-137 (694)
109 KOG4666 Predicted phosphate ac 63.8 13 0.00028 38.6 5.3 64 356-419 259-323 (412)
110 KOG4578 Uncharacterized conser 63.4 4.6 0.0001 41.7 2.1 64 357-420 334-398 (421)
111 KOG0041 Predicted Ca2+-binding 60.1 9.6 0.00021 37.0 3.4 32 393-424 100-131 (244)
112 PF05517 p25-alpha: p25-alpha 57.6 33 0.00072 31.3 6.5 62 360-421 6-70 (154)
113 cd05024 S-100A10 S-100A10: A s 55.8 18 0.00039 30.7 4.0 30 356-385 48-77 (91)
114 PF12763 EF-hand_4: Cytoskelet 54.4 17 0.00036 31.3 3.7 30 356-385 43-72 (104)
115 PF11300 DUF3102: Protein of u 51.7 37 0.00081 30.6 5.6 61 34-115 58-130 (130)
116 PRK12309 transaldolase/EF-hand 48.3 23 0.0005 37.5 4.3 30 386-415 328-357 (391)
117 KOG3555 Ca2+-binding proteogly 47.4 21 0.00045 37.3 3.7 71 348-418 203-276 (434)
118 PF09069 EF-hand_3: EF-hand; 47.1 1.4E+02 0.0031 25.2 8.1 63 355-420 2-75 (90)
119 PF13443 HTH_26: Cro/C1-type H 46.5 13 0.00028 27.9 1.7 29 40-70 26-54 (63)
120 smart00540 LEM in nuclear memb 43.8 20 0.00044 26.4 2.2 21 100-120 3-23 (44)
121 KOG0751 Mitochondrial aspartat 43.7 60 0.0013 35.6 6.5 56 364-421 82-137 (694)
122 PF14658 EF-hand_9: EF-hand do 43.3 38 0.00083 27.1 3.9 30 355-384 34-64 (66)
123 KOG1029 Endocytic adaptor prot 42.7 49 0.0011 38.0 5.9 58 360-420 20-77 (1118)
124 PTZ00373 60S Acidic ribosomal 42.5 1.1E+02 0.0023 27.0 6.9 53 359-416 6-58 (112)
125 PF07498 Rho_N: Rho terminatio 40.9 52 0.0011 23.7 4.0 31 101-131 3-35 (43)
126 KOG2871 Uncharacterized conser 40.3 19 0.00041 37.9 2.2 63 355-417 308-371 (449)
127 PF04437 RINT1_TIP1: RINT-1 / 36.7 31 0.00067 37.1 3.3 90 25-115 397-493 (494)
128 KOG4347 GTPase-activating prot 35.5 38 0.00081 38.0 3.6 56 358-414 557-612 (671)
129 smart00540 LEM in nuclear memb 34.9 77 0.0017 23.4 4.1 20 51-70 3-22 (44)
130 cd05833 Ribosomal_P2 Ribosomal 34.2 1.7E+02 0.0037 25.5 6.8 53 360-417 5-57 (109)
131 KOG0998 Synaptic vesicle prote 34.2 18 0.00039 42.0 1.0 66 356-423 283-348 (847)
132 PF00404 Dockerin_1: Dockerin 33.8 38 0.00083 21.1 2.0 16 402-417 1-16 (21)
133 TIGR00599 rad18 DNA repair pro 32.4 1.4E+02 0.003 31.8 7.1 64 50-138 265-330 (397)
134 cd07313 terB_like_2 tellurium 31.9 59 0.0013 26.9 3.6 50 370-419 13-64 (104)
135 PF02885 Glycos_trans_3N: Glyc 31.8 37 0.00081 26.4 2.2 40 20-64 2-42 (66)
136 TIGR01848 PHA_reg_PhaR polyhyd 30.1 1.1E+02 0.0023 26.9 4.8 59 363-421 10-78 (107)
137 PF12095 DUF3571: Protein of u 29.0 53 0.0012 27.5 2.7 27 121-149 24-50 (83)
138 KOG1707 Predicted Ras related/ 28.2 58 0.0013 36.3 3.6 55 357-417 316-374 (625)
139 KOG4004 Matricellular protein 27.5 23 0.00051 34.4 0.4 56 361-418 192-248 (259)
140 COG2058 RPP1A Ribosomal protei 26.7 2.4E+02 0.0053 24.8 6.4 52 361-418 6-57 (109)
141 PRK00523 hypothetical protein; 26.6 1.2E+02 0.0026 24.7 4.3 34 369-402 36-69 (72)
142 PRK06402 rpl12p 50S ribosomal 26.1 3E+02 0.0066 24.0 6.9 42 372-418 16-57 (106)
143 PF03672 UPF0154: Uncharacteri 26.1 1.3E+02 0.0028 24.0 4.3 34 369-402 28-61 (64)
144 smart00674 CENPB Putative DNA- 26.0 2E+02 0.0043 21.7 5.4 35 15-49 6-41 (66)
145 PF10281 Ish1: Putative stress 25.7 1.8E+02 0.0039 20.2 4.6 31 101-131 2-35 (38)
146 PF01885 PTS_2-RNA: RNA 2'-pho 25.1 94 0.002 29.4 4.0 37 366-402 26-62 (186)
147 cd04411 Ribosomal_P1_P2_L12p R 23.9 3.7E+02 0.008 23.3 7.1 41 373-418 17-57 (105)
148 PF07499 RuvA_C: RuvA, C-termi 23.1 1.7E+02 0.0038 21.2 4.3 40 375-418 3-42 (47)
149 PF03683 UPF0175: Uncharacteri 22.4 1.6E+02 0.0034 23.7 4.3 32 100-131 43-74 (76)
150 KOG3821 Heparin sulfate cell s 22.4 2.4E+02 0.0053 31.3 6.9 155 14-174 135-319 (563)
151 PF08976 DUF1880: Domain of un 22.2 63 0.0014 28.7 2.0 32 388-419 3-34 (118)
152 cd08032 LARP_7 La RNA-binding 22.1 1.8E+02 0.0039 24.1 4.6 43 339-381 1-48 (82)
153 TIGR00444 mazG MazG family pro 22.1 2E+02 0.0044 28.5 5.9 52 58-112 191-244 (248)
154 KOG2391 Vacuolar sorting prote 21.8 5E+02 0.011 27.3 8.6 31 392-422 313-344 (365)
155 PF08461 HTH_12: Ribonuclease 21.7 1.2E+02 0.0025 23.9 3.3 37 369-405 10-46 (66)
156 PF05042 Caleosin: Caleosin re 21.6 3E+02 0.0066 26.1 6.5 63 355-418 95-164 (174)
157 PF11116 DUF2624: Protein of u 21.1 3E+02 0.0064 23.2 5.7 49 371-419 13-61 (85)
158 COG3763 Uncharacterized protei 20.9 1.7E+02 0.0038 23.8 4.1 34 369-402 35-68 (71)
159 PF08667 BetR: BetR domain; I 20.7 1.9E+02 0.0041 26.7 4.9 44 20-70 36-79 (147)
160 PF08349 DUF1722: Protein of u 20.7 4.2E+02 0.0092 22.8 7.0 81 337-420 12-97 (117)
161 PLN00138 large subunit ribosom 20.7 3.8E+02 0.0083 23.5 6.6 51 361-416 6-56 (113)
162 PRK00819 RNA 2'-phosphotransfe 20.6 1.4E+02 0.003 28.3 4.2 37 366-402 27-63 (179)
163 PF09068 EF-hand_2: EF hand; 20.1 1.1E+02 0.0023 27.3 3.2 28 358-385 99-126 (127)
No 1
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=100.00 E-value=8.3e-45 Score=376.78 Aligned_cols=214 Identities=49% Similarity=0.789 Sum_probs=198.7
Q ss_pred cccchhhhHHHHHHHHHHhc-cCCCCCHHHHHHHHhcCCCCCcCCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 014032 9 RGGDIKKTAEDLDEFMNKVR-TGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQE 87 (432)
Q Consensus 9 ~~~~~~~~~~~~~~f~~kvr-~G~~ps~edIl~~a~lF~d~l~Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~rl~~ 87 (432)
+++.++.+. +|..|+.||| .|.++|+++|+.||+||+|+++||||+|+||++||+||+++|||||++|||+||+++++
T Consensus 248 ~~~e~~qs~-~fd~f~~kvr~~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ 326 (499)
T KOG1043|consen 248 SNLETSQSI-EFDRFLGKVRFIGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKE 326 (499)
T ss_pred hhhHHHHHH-HHHHHHHHhcccCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHH
Confidence 344566666 8999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHhc-cCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhhhcCCCCChhHHhhhhhhccCCCCChHHHH
Q 014032 88 IKNDDKMIQAEG-VESLSEAELRQACRDRGLLG-LLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAV 165 (432)
Q Consensus 88 i~~dD~~I~~EG-v~~Ls~~EL~~AC~~RGi~~-~~s~e~lr~~L~~WL~Ls~~~~ip~sLLllsra~~~~~~~~~~~~l 165 (432)
|+.||+.|.+|| |++|+..||+.||++|||++ ++++++|+.+|..|+++|++++||++||+|||+|+|.+.....+.+
T Consensus 327 ik~dD~~I~~eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~~ql~~wldlsl~~~vps~lL~Lsr~~~~~~~~~~~~s~ 406 (499)
T KOG1043|consen 327 IKKDDKHIATEGAVESLSLLELQIACRERGMRALGVSEERLREQLRVWLDLSLDKKVPSVLLLLSRTFSLGQNSKAPSSS 406 (499)
T ss_pred hcccccchhhhhhhhHhhHHHHHHHHHhhhcchhccchhhhhHHHHHHHhhhccccCchHHHHHhhhhhhhhcccCCchh
Confidence 999999999999 99999999999999999998 5899999999999999999999999999999999999888888999
Q ss_pred HHHHcc-CChHHHhhhhhccccCCcchhhhhhhHHHhHHHHHHhHHHHHHHHHHHHHHH
Q 014032 166 QATLSS-LPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKEEEEEEEEEQAKMK 223 (432)
Q Consensus 166 ~~~ls~-lp~~~~~~~~~~~~~~~~~~~~~k~kl~~l~~~ee~i~~e~~~~~~~~~~~~ 223 (432)
..+|+. +|+.+.....+++.+++.+.++++.|++.|+.||+.|.+|.+++.+.....+
T Consensus 407 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~~~~~e~eee~~~~~~~k 465 (499)
T KOG1043|consen 407 SGKLQIAAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEEIISEEEEEEEKQYGRAK 465 (499)
T ss_pred hhHhhhhccccHHHhcccccccccccccchHHHHHhhhccccccchhhhcccccccccc
Confidence 999995 9999999999998888888889999999999999999999996655444433
No 2
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=100.00 E-value=7.6e-38 Score=307.75 Aligned_cols=134 Identities=55% Similarity=0.918 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHhcCCCCCcCCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhHHHH
Q 014032 17 AEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQ 96 (432)
Q Consensus 17 ~~~~~~f~~kvr~G~~ps~edIl~~a~lF~d~l~Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~rl~~i~~dD~~I~ 96 (432)
..+|.+||++|++|.+||++||++|+++|+|+++|++|+|+||++|||+||++||||++++|+||++|+.+|+.||++|.
T Consensus 134 ~~~~~~~~~kv~~~~~~s~~eil~~~~lF~d~~~Ld~Lsr~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~dD~~i~ 213 (268)
T PF07766_consen 134 RKKLSEFFKKVRSGGHPSNEEILKVAKLFKDELTLDNLSRPHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQDDRLIK 213 (268)
T ss_dssp HHHHHHHHHHHHT-BTB-HHHHHHHHTTS-HHHHHHHS-HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHhcCCCcccccCCHHHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHhhhcCCCCChhHHhhh
Q 014032 97 AEGVESLSEAELRQACRDRGLLG-LLSVEEMRQQLRDWLDLSLNHSVPSSLLILS 150 (432)
Q Consensus 97 ~EGv~~Ls~~EL~~AC~~RGi~~-~~s~e~lr~~L~~WL~Ls~~~~ip~sLLlls 150 (432)
+|||++||.+||+.||++|||++ ++|+++||.||.+||++|++.++|+++||||
T Consensus 214 ~eGv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~L~~WL~ls~~~~~p~~lLlL~ 268 (268)
T PF07766_consen 214 REGVDSLSEEELQDACYERGLRSTGLSEEELREWLKQWLQLSSNKKVPSSLLLLH 268 (268)
T ss_dssp HH-GGGS-HHHHHHHHHHTT---TT--HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred HhccccCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHccCCCCchhhccC
Confidence 99999999999999999999998 6999999999999999999999999999996
No 3
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=99.62 E-value=1.4e-15 Score=145.84 Aligned_cols=133 Identities=23% Similarity=0.359 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHHhccCCCCCHHHHHHHHhcCCCCCcCCCCCHHHHHHHHHH------hCCCCCCCcHHHHHHHHHHHHHH
Q 014032 15 KTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKY------MGISPFGTDAYLRYMLRRRLQEI 88 (432)
Q Consensus 15 ~~~~~~~~f~~kvr~G~~ps~edIl~~a~lF~d~l~Ld~Lsr~qL~alck~------~~l~p~g~~~~lr~rLr~rl~~i 88 (432)
+-..+|.+++-+-|- .|++||++. .++|.+-|.=-+.-|.-||.- |.++.|-+..++|+||..|+..|
T Consensus 149 qQr~ef~~~y~~~rl---~s~~~~~~~---l~~p~~td~~k~~~l~dl~~~~~~gtH~~l~~yp~p~~~rHRl~~h~~~i 222 (299)
T KOG4263|consen 149 QQRREFFQLYVTKRL---ISGEQLLKT---LGNPSSTDENKMKPLDDLDSSEMLGTHMLLTSYPPPPLLRHRLKTHTTVI 222 (299)
T ss_pred HhHhHHHHHHHHHHh---cccHHHHHH---hcCccccCccccccHHHHHhHhhhhhHhhhccCCCChHHHHHHHHHHHHH
Confidence 345567777666552 355777743 445665554333334444432 45667778889999999999999
Q ss_pred HHhhHHHHHhccCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHhhhcCCC-CChhHHhhhhhh
Q 014032 89 KNDDKMIQAEGVESLSEAELRQACRDRGLLGL-LSVEEMRQQLRDWLDLSLNHS-VPSSLLILSRAF 153 (432)
Q Consensus 89 ~~dD~~I~~EGv~~Ls~~EL~~AC~~RGi~~~-~s~e~lr~~L~~WL~Ls~~~~-ip~sLLllsra~ 153 (432)
++.|++|.++||++||..||+.||+.||+++. ++.++||.||++|+++|..-+ ---|||++++.|
T Consensus 223 h~lD~al~~~gi~~lt~~~l~~~CYlRgln~~~~~~~~mr~wLr~wvkiS~Slk~~~~slllh~pvl 289 (299)
T KOG4263|consen 223 HQLDKALAKLGIGQLTAQELKSACYLRGLNSTHIGEDRMRTWLREWVKISCSLKEAELSLLLHNPVL 289 (299)
T ss_pred HHHHHHHHHhccccCCHHHHHHHhhhccCCCCccChHHHHHHHHHHHhhhhcccccchhhhhhhhHH
Confidence 99999999999999999999999999999985 999999999999999999755 445777777766
No 4
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.12 E-value=1.3e-10 Score=97.16 Aligned_cols=66 Identities=20% Similarity=0.278 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 356 AKIGDRWRLLDR-DYDGKVTAEEVASAAMY-LKDTLDK-EGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 356 ekl~~aF~lfD~-DgdG~IS~eEL~~aL~~-LG~~lte-eel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..+..+|+.||+ +++|+|+..||+.+|+. +|..++. +++..++..+|.|+||.|+|+||+.+|..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 357889999999 99999999999999999 9988888 999999999999999999999999998654
No 5
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.10 E-value=3.9e-10 Score=103.58 Aligned_cols=84 Identities=21% Similarity=0.398 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 337 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 337 ~krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
+..+..+++..-+. .+..+++..+|++||.|++|+|+..+|..+++.+|..++++++..++..+|.|+||.|+|++|++
T Consensus 74 f~~Fl~~ms~~~~~-~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 74 FPEFLTVMSVKLKR-GDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred HHHHHHHHHHHhcc-CCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHH
Confidence 34555555555443 23367899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 014032 417 LASQT 421 (432)
Q Consensus 417 lm~~l 421 (432)
++...
T Consensus 153 ~~~~~ 157 (160)
T COG5126 153 LIKDS 157 (160)
T ss_pred HHhcc
Confidence 87543
No 6
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.09 E-value=3.3e-10 Score=87.55 Aligned_cols=62 Identities=21% Similarity=0.487 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHH----HHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEG----IQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteee----l~eLi~elD~D~DG~I~~dEF~klm 418 (432)
++..+|+.||.|++|+|+.+||..++..++..++... +..++..+|.|+||.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4788999999999999999999999999997766654 5556999999999999999999875
No 7
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=6e-10 Score=100.37 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhhhhhh---HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHH
Q 014032 336 LINRVDAMLQKLEKEIDD---VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVE 412 (432)
Q Consensus 336 L~krV~~MI~~ld~~i~~---~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~d 412 (432)
-...+..|+......... ....+.++|+.||.||+|+||.++|+.+|..+|.+.+.+++..++..+|.|+||.|+|+
T Consensus 62 ~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ 141 (151)
T KOG0027|consen 62 DFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFE 141 (151)
T ss_pred cHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHH
Confidence 345555655555443221 24589999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 014032 413 DIVKLASQ 420 (432)
Q Consensus 413 EF~klm~~ 420 (432)
+|+++|..
T Consensus 142 ef~~~m~~ 149 (151)
T KOG0027|consen 142 EFVKMMSG 149 (151)
T ss_pred HHHHHHhc
Confidence 99999864
No 8
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.03 E-value=7.5e-10 Score=92.11 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=60.8
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 356 AKIGDRWRLLD-RDYDG-KVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 356 ekl~~aF~lfD-~DgdG-~IS~eEL~~aL~~-----LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..+..+|+.|| +||+| +|+.++|+.+|+. +|..++++++..+++.+|.|+||.|+|++|+.++..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35789999998 89999 5999999999999 8999999999999999999999999999999998643
No 9
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.94 E-value=3.3e-09 Score=88.10 Aligned_cols=70 Identities=11% Similarity=0.263 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHhc-CCCCCc-ccHHHHHHHHHh-cC----CCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 352 DDVDAKIGDRWRLLD-RDYDGK-VTAEEVASAAMY-LK----DTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 352 ~~~dekl~~aF~lfD-~DgdG~-IS~eEL~~aL~~-LG----~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
+.....+.++|+.|| .||+|+ |+..||+.+|+. +| ..++++++..++..+|.|++|.|+|++|+.++..+
T Consensus 5 e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 344567899999997 999995 999999999985 54 35688999999999999999999999999998654
No 10
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.92 E-value=3.5e-09 Score=95.42 Aligned_cols=68 Identities=25% Similarity=0.455 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
...+..+|+.||.|++|+|+..+|..+++.+|..+++.++..++..+|.|++|.|++++|+.++....
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 35688999999999999999999999999999999999999999999999999999999999997654
No 11
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.92 E-value=3.5e-09 Score=88.38 Aligned_cols=67 Identities=18% Similarity=0.291 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 355 DAKIGDRWRLLDR-DY-DGKVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 355 dekl~~aF~lfD~-Dg-dG~IS~eEL~~aL~~-----LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
-..+..+|..||. || +|+|+.+||+.+|+. +|..++++++..++..+|.|++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4568899999997 97 699999999999986 5778899999999999999999999999999988653
No 12
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.88 E-value=4.4e-09 Score=87.52 Aligned_cols=65 Identities=9% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHHHHHHHhcC-CC-CCcccHHHHHHHHH---hcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 357 KIGDRWRLLDR-DY-DGKVTAEEVASAAM---YLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 357 kl~~aF~lfD~-Dg-dG~IS~eEL~~aL~---~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
.+-..|+.||. || +|+|+.+||+.+|+ .+|.+++++++..+++.+|.|++|.|+|++|+.+|..+
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46678999998 77 89999999999997 37999999999999999999999999999999998654
No 13
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.88 E-value=6.4e-09 Score=87.10 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=57.3
Q ss_pred HHHHHHHHHhc-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 356 AKIGDRWRLLD-RDYDG-KVTAEEVASAAMY-L----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 356 ekl~~aF~lfD-~DgdG-~IS~eEL~~aL~~-L----G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..+..+|+.|| .||+| +||..||+.+|+. + +...++.+|..++..+|.|+||.|+|+||+.+|..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 35778899999 78999 5999999999976 2 345578899999999999999999999999998654
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.79 E-value=1.7e-08 Score=77.30 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 359 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 359 ~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
+.+|..+|.|++|.|+.+++..+++.+|. +.+.+..++..+|.+++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46899999999999999999999999874 8889999999999999999999999998754
No 15
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=3.3e-08 Score=90.40 Aligned_cols=84 Identities=23% Similarity=0.416 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 337 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 337 ~krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
+.-+..++...-..-+ ...++..+|++||-|++|+||..+|+.++..||.+++++++.+||.++|.|+||-|+-++|+.
T Consensus 88 fe~f~~~mt~k~~e~d-t~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~ 166 (172)
T KOG0028|consen 88 FEDFRRVMTVKLGERD-TKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIR 166 (172)
T ss_pred hHHHHHHHHHHHhccC-cHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHH
Confidence 3445555454444333 456899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC
Q 014032 417 LASQT 421 (432)
Q Consensus 417 lm~~l 421 (432)
+|...
T Consensus 167 imk~t 171 (172)
T KOG0028|consen 167 IMKKT 171 (172)
T ss_pred HHhcC
Confidence 98753
No 16
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.75 E-value=3.5e-08 Score=80.84 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhcC--CCCCcccHHHHHHHHHh-cCCCC----CHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 355 DAKIGDRWRLLDR--DYDGKVTAEEVASAAMY-LKDTL----DKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 355 dekl~~aF~lfD~--DgdG~IS~eEL~~aL~~-LG~~l----teeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
...+..+|..||. |++|.|+.++|..+++. +|..+ +.+++..++..+|.+++|.|+|++|+.++..+
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3458889999999 89999999999999986 56544 58999999999999999999999999988654
No 17
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.73 E-value=4.2e-08 Score=82.08 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
..+..+|..||.|++|.|+.++|..+|+.+| ++.+++..++..+|.+++|.|+|++|+.++..+.
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 4688999999999999999999999999875 7889999999999999999999999999886543
No 18
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.62 E-value=1.5e-07 Score=68.73 Aligned_cols=61 Identities=36% Similarity=0.631 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
+..+|..+|.+++|.|+.+++..++..++..++...+..++..+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998765
No 19
>PF14658 EF-hand_9: EF-hand domain
Probab=98.62 E-value=8.5e-08 Score=75.92 Aligned_cols=60 Identities=13% Similarity=0.334 Sum_probs=57.1
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHhHcCCCC-CcccHHHHHHHHhc
Q 014032 361 RWRLLDRDYDGKVTAEEVASAAMYLKD-TLDKEGIQELIANLSKDRE-GKILVEDIVKLASQ 420 (432)
Q Consensus 361 aF~lfD~DgdG~IS~eEL~~aL~~LG~-~lteeel~eLi~elD~D~D-G~I~~dEF~klm~~ 420 (432)
+|.+||.++.|.|.+.+|+..|+.+|. .+++.+++.+.+.+|.++. |.|+|++|+.+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 799999999999999999999999988 9999999999999999987 99999999999863
No 20
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.61 E-value=1.1e-07 Score=70.99 Aligned_cols=51 Identities=27% Similarity=0.435 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 369 YDGKVTAEEVASAAMYLKDT-LDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 369 gdG~IS~eEL~~aL~~LG~~-lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
.+|.|+.++|..+|..+|.. ++++++..++..+|.|++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999888999 9999999999999999999999999999885
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.60 E-value=1.1e-07 Score=87.63 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
-++++++|.+||+|++|.|+.++|..+++.+|..+++..+.+|+..+|. +.|.|+|.+|+.+|....
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999999999999999999 999999999999997643
No 22
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.58 E-value=2e-07 Score=77.74 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHHHHHH-hcCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 356 AKIGDRWRL-LDRDYDG-KVTAEEVASAAMYL-----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 356 ekl~~aF~l-fD~DgdG-~IS~eEL~~aL~~L-----G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..+..+|+. +|.||+| +||.+||+.++... +...++.++..++..+|.|+||.|+|+||+.+|..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 356789999 7888986 99999999999875 445678899999999999999999999999998654
No 23
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.54 E-value=4.3e-07 Score=85.74 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCC--HHH----HHHHHHhHcCCCCCcccHHHHHHHHhcCcc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLD--KEG----IQELIANLSKDREGKILVEDIVKLASQTED 423 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lt--eee----l~eLi~elD~D~DG~I~~dEF~klm~~l~e 423 (432)
+.++.-+|++||.+++|+|+.+||..++..+ |...+ ++. +..++.++|.|+||+|+|+||.+++...+.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~P~ 178 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQPD 178 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCcc
Confidence 4689999999999999999999999999887 44455 544 455788899999999999999999987643
No 24
>PTZ00183 centrin; Provisional
Probab=98.52 E-value=3.9e-07 Score=80.59 Aligned_cols=67 Identities=27% Similarity=0.479 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
...+..+|..||.+++|+|+.+++..++..+|..++..++..++..+|.|++|.|+|++|..++...
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 3568899999999999999999999999999999999999999999999999999999999998653
No 25
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1.7e-07 Score=85.76 Aligned_cols=76 Identities=30% Similarity=0.434 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc-Ccccchhhc
Q 014032 354 VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ-TEDTETAET 429 (432)
Q Consensus 354 ~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~-l~e~~~~ee 429 (432)
..+++..+|..||.+++|+|.+++|.-+++.+|+.++.++|..++..+|.++.|.|+|++|..+|.. +...++.++
T Consensus 31 q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 31 QKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred HHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHH
Confidence 3467999999999999999999999999999999999999999999999999999999999999753 344444443
No 26
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.46 E-value=6.1e-07 Score=80.56 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=72.3
Q ss_pred hHH-HHHHHHHHHHHhhhhhhH-HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccH
Q 014032 334 SAL-INRVDAMLQKLEKEIDDV-DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILV 411 (432)
Q Consensus 334 ~rL-~krV~~MI~~ld~~i~~~-dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~ 411 (432)
+|+ +..|..|++++-+.-+.. -+.+-+.++.||++|+|+|...+|+.+|..+|..++++++..++... .|++|.|+|
T Consensus 64 ~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~Y 142 (152)
T KOG0030|consen 64 KRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINY 142 (152)
T ss_pred hhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcH
Confidence 444 488899999987753322 23577799999999999999999999999999999999999999986 588999999
Q ss_pred HHHHHHHh
Q 014032 412 EDIVKLAS 419 (432)
Q Consensus 412 dEF~klm~ 419 (432)
++|++.+.
T Consensus 143 E~fVk~i~ 150 (152)
T KOG0030|consen 143 EAFVKHIM 150 (152)
T ss_pred HHHHHHHh
Confidence 99998764
No 27
>PTZ00184 calmodulin; Provisional
Probab=98.46 E-value=6.5e-07 Score=77.94 Aligned_cols=65 Identities=28% Similarity=0.503 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
...+..+|..||.+++|+|+.+++..++..+|..++.+.+..++..+|.+++|.|+|++|+.++.
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 35678899999999999999999999999999999999999999999999999999999998874
No 28
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.38 E-value=1.1e-06 Score=76.85 Aligned_cols=60 Identities=22% Similarity=0.369 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
...+..+|..||.|+||+||.+||..++ ..+.+..+..++..+|.|+||.|+++||...+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4578999999999999999999999876 23567889999999999999999999999988
No 29
>PTZ00183 centrin; Provisional
Probab=98.35 E-value=1.7e-06 Score=76.51 Aligned_cols=65 Identities=29% Similarity=0.459 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
..+..+|..||.+++|.|+..+|..+++.+|..++...+..++..+|.+++|.|+|.+|+.++..
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 35677788888888888888888888887777777777888888888888888888888776543
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.32 E-value=1.3e-06 Score=72.46 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 357 KIGDRWRLLDRD--YDGKVTAEEVASAAM-YLKDTLD----KEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 357 kl~~aF~lfD~D--gdG~IS~eEL~~aL~-~LG~~lt----eeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
.+...|+.|+.. ++|+|+.+||+.+|. .+|..++ +.++..++..+|.|++|.|+|++|+.++..+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 466788899865 479999999999996 5676676 8999999999999999999999999998654
No 31
>PTZ00184 calmodulin; Provisional
Probab=98.31 E-value=2.3e-06 Score=74.45 Aligned_cols=65 Identities=23% Similarity=0.449 Sum_probs=55.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
..+...|..+|.+++|.|+..++..++..+|..++.+.+..++..+|.+++|.|+|++|+.++..
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 45778888999999999999999988888888888888888999999999999999999887754
No 32
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.26 E-value=6.8e-06 Score=75.09 Aligned_cols=88 Identities=14% Similarity=0.218 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHH
Q 014032 335 ALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDI 414 (432)
Q Consensus 335 rL~krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF 414 (432)
..+..+..|++.--.- .+-++.|..||..||.+++|+|..+.|+.+|..+|.++++++|..++..+-.|..|.|+|..|
T Consensus 81 INft~FLTmfGekL~g-tdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~ 159 (171)
T KOG0031|consen 81 INFTVFLTMFGEKLNG-TDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAF 159 (171)
T ss_pred eeHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHH
Confidence 4556777777764443 344678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcc
Q 014032 415 VKLASQTED 423 (432)
Q Consensus 415 ~klm~~l~e 423 (432)
+.++.....
T Consensus 160 ~~~ithG~~ 168 (171)
T KOG0031|consen 160 TYIITHGEK 168 (171)
T ss_pred HHHHHcccc
Confidence 999985543
No 33
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.18 E-value=2.6e-06 Score=76.55 Aligned_cols=69 Identities=14% Similarity=0.289 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCC--CCCcccHHHHHHHHhcCccc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKD--REGKILVEDIVKLASQTEDT 424 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D--~DG~I~~dEF~klm~~l~e~ 424 (432)
.+++.+|.+||..|||+|+...+..+|+.+|.+|++.++.+.+..++.+ +--.|+|++|+.+++.+.+.
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999877 45689999999998876543
No 34
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.06 E-value=2e-05 Score=75.62 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhhhh------h------HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCC
Q 014032 338 NRVDAMLQKLEKEID------D------VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDR 405 (432)
Q Consensus 338 krV~~MI~~ld~~i~------~------~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~ 405 (432)
..+.-||.-++.... + .-...+.+|+.||+|++|.|+..||..+|..+|..++++-++-|++.+|.-+
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~ 173 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFG 173 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcccc
Confidence 456667777766421 1 1234678899999999999999999999999999999999999999999888
Q ss_pred CCcccHHHHHHHHhc
Q 014032 406 EGKILVEDIVKLASQ 420 (432)
Q Consensus 406 DG~I~~dEF~klm~~ 420 (432)
+|.|.||+|+..+..
T Consensus 174 ~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 174 GGRIDFDDFIQCCVV 188 (221)
T ss_pred CCceeHHHHHHHHHH
Confidence 999999999987643
No 35
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.94 E-value=2.5e-05 Score=74.22 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
.+..+|..||.|.||+|+..||+.+|..+|.+-|.=-+..||.++|.|.||+|+|-+|+-+...
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 4567999999999999999999999999998888888999999999999999999999887754
No 36
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.92 E-value=1.7e-05 Score=75.32 Aligned_cols=68 Identities=22% Similarity=0.427 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc----CC-------CCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 353 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL----KD-------TLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 353 ~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L----G~-------~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
.+++++..+|++||.||+|+|+.+|+..+++.+ |. .-+++.+..+++.+|.|+||.|+++||+..+..
T Consensus 97 t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 97 TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred cHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 446788899999999999999999998887654 32 124466889999999999999999999887643
No 37
>PLN02964 phosphatidylserine decarboxylase
Probab=97.84 E-value=3.8e-05 Score=84.45 Aligned_cols=64 Identities=14% Similarity=0.255 Sum_probs=54.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
+..+|..+|.|++|.|+.+|+..+|..+|...+++++..++..+|.|++|.|+++||..++...
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 6788888888888888888888888888877888888888888888888888888888888664
No 38
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.80 E-value=9.8e-05 Score=67.64 Aligned_cols=59 Identities=15% Similarity=0.313 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
+++++||.++|.|+||+|..+||+..+..+|...++++|..|+.+. .|.|+|--|+.++
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmf 90 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMF 90 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHH
Confidence 4788999999999999999999999999999999999998877764 3455555555554
No 39
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.74 E-value=6.5e-05 Score=71.38 Aligned_cols=89 Identities=17% Similarity=0.164 Sum_probs=70.6
Q ss_pred hhhHHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCccc
Q 014032 332 VSSALI-NRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKIL 410 (432)
Q Consensus 332 as~rL~-krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~ 410 (432)
++..+. ..+..+...+-. ..+...-...+|+.||.|++|.|+..|+..++..+-..-.++.+...++-+|.|+||.|+
T Consensus 40 P~G~~~~~~F~~i~~~~fp-~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 40 PSGRLTLEEFREIYASFFP-DGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCCccCHHHHHHHHHHHCC-CCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEc
Confidence 334433 447777777654 233344566799999999999999999999998876667888899999999999999999
Q ss_pred HHHHHHHHhcC
Q 014032 411 VEDIVKLASQT 421 (432)
Q Consensus 411 ~dEF~klm~~l 421 (432)
++++++++..+
T Consensus 119 ~~Eml~iv~~i 129 (193)
T KOG0044|consen 119 KEEMLKIVQAI 129 (193)
T ss_pred HHHHHHHHHHH
Confidence 99999998653
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=97.72 E-value=8.7e-05 Score=81.71 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-CCCCHHH---HHHHHHhHcCCCCCcccHHHHHHHHhcCcccch
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLK-DTLDKEG---IQELIANLSKDREGKILVEDIVKLASQTEDTET 426 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG-~~lteee---l~eLi~elD~D~DG~I~~dEF~klm~~l~e~~~ 426 (432)
.++.++|..||+|++|+| |..+++.+| ..+++++ +..++..+|.|+||.|+|+||+.+|..+.....
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~s 213 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVA 213 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCC
Confidence 567888999999999987 888888899 5888887 789999999999999999999988876654333
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.72 E-value=4.1e-05 Score=51.12 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMY 384 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~ 384 (432)
+..+|+.||+||||+|+.+|+..+|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456666777777777777777666654
No 42
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.69 E-value=0.00013 Score=66.48 Aligned_cols=85 Identities=18% Similarity=0.306 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHH----HHHHHhHcCCCCCcccHH
Q 014032 338 NRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGI----QELIANLSKDREGKILVE 412 (432)
Q Consensus 338 krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lteeel----~eLi~elD~D~DG~I~~d 412 (432)
.-+..|.+-+.. ....+-++.-+|++||-|+|++|-..+|...+..+ ...++++++ ..+|.+.|.||||+++|.
T Consensus 91 ddFlDmfSV~sE-~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~ 169 (189)
T KOG0038|consen 91 DDFLDMFSVFSE-MAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFA 169 (189)
T ss_pred HHHHHHHHHHHh-hChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHH
Confidence 444445444332 23446677889999999999999999999999888 456888775 457888999999999999
Q ss_pred HHHHHHhcCcc
Q 014032 413 DIVKLASQTED 423 (432)
Q Consensus 413 EF~klm~~l~e 423 (432)
+|-+++...++
T Consensus 170 eFe~~i~raPD 180 (189)
T KOG0038|consen 170 EFEHVILRAPD 180 (189)
T ss_pred HHHHHHHhCcc
Confidence 99999977654
No 43
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.69 E-value=9.5e-05 Score=77.20 Aligned_cols=69 Identities=17% Similarity=0.386 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCccc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDT 424 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L----G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~e~ 424 (432)
..+.-+|+.+|.|++|.||.+|++.+..-+ ...++++++.++...+|.|+||.|+++||+.....+...
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr~ 619 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDRR 619 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcch
Confidence 346779999999999999999999998755 457899999999999999999999999999988766543
No 44
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00021 Score=74.15 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCccc
Q 014032 353 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDT 424 (432)
Q Consensus 353 ~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~e~ 424 (432)
.-+.++...|+.+|.++||.|.++|+...++.+|.+++++++..++..+|.++++.|++++|...+...+..
T Consensus 79 ~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s 150 (463)
T KOG0036|consen 79 NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPES 150 (463)
T ss_pred HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChh
Confidence 346678999999999999999999999999999999999999999999999999999999999888766643
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.56 E-value=9.2e-05 Score=49.53 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHH-hcC
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAM-YLK 386 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~-~LG 386 (432)
++..+|+.||.|++|+|+.+||..+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999998 575
No 46
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.55 E-value=0.00032 Score=73.29 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHH
Q 014032 336 LINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIV 415 (432)
Q Consensus 336 L~krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~ 415 (432)
|-+.+...++.+.+. .-....+..+|+.||.||+|+|+.+|+.. +..+|..+|.|+||.|+++||.
T Consensus 315 L~~~i~~~~~~~~~~-~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~ 380 (391)
T PRK12309 315 LEKLLAHRLARLEGG-EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMR 380 (391)
T ss_pred HHHHHHHHHHHhhcc-ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHH
Confidence 333333343434332 23356788999999999999999999841 5789999999999999999999
Q ss_pred HHHhc
Q 014032 416 KLASQ 420 (432)
Q Consensus 416 klm~~ 420 (432)
..+..
T Consensus 381 ~~~~~ 385 (391)
T PRK12309 381 AGLGA 385 (391)
T ss_pred HHHHH
Confidence 98754
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.52 E-value=0.0001 Score=49.14 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.2
Q ss_pred HHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 393 GIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 393 el~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
++..+++.+|.|+||.|+++||..+|..+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999998653
No 48
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.49 E-value=0.00049 Score=58.03 Aligned_cols=64 Identities=14% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~-----LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
.+...|..|- .+.|.++..||+..|.. ++..-++.-+..++..+|.|+||.|+|.||+.+|..+
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4566888887 34579999999999853 3444567889999999999999999999999998654
No 49
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.29 E-value=0.00077 Score=70.12 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 353 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDT-LDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 353 ~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~-lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
+.+.+++..|..||.+++|.|+..+|.+.+..++.. ++..-...+++.+|.|.||.++|.+|.+.+..
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 446789999999999999999999999999999765 77777889999999999999999999998754
No 50
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.99 E-value=0.0025 Score=54.85 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..++...|..+|. ++|+|+.+....++... .++.+.+..|..-.|.|+||.++++||+-.|..+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3568889999985 68999999999999876 5888999999999999999999999998776544
No 51
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=96.83 E-value=0.002 Score=44.78 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 014032 101 ESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 134 (432)
Q Consensus 101 ~~Ls~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL 134 (432)
++|+..||+..|..||+++.++..+|.+.|.+|+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 5799999999999999999999999999999996
No 52
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=96.75 E-value=0.017 Score=61.80 Aligned_cols=265 Identities=17% Similarity=0.115 Sum_probs=151.6
Q ss_pred HHHHhhhcCCCCChhHHhhhhhhccCCCCChHHHHHHHHccCChHHHhhhhhccccCCcchhhhhhhHHHhHHHHHHhHH
Q 014032 131 RDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKE 210 (432)
Q Consensus 131 ~~WL~Ls~~~~ip~sLLllsra~~~~~~~~~~~~l~~~ls~lp~~~~~~~~~~~~~~~~~~~~~k~kl~~l~~~ee~i~~ 210 (432)
.+|+....+..+|.++..+.++.+.......+..+..+...++.-+-.++.+.....+...+.+..+.+ ....+
T Consensus 44 ~d~~~~~~~~s~~~s~~~~~~~~~~~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~lss~~a~~~~------~~~a~ 117 (499)
T KOG1043|consen 44 VDKLAWVKTESYKASLYSLLQAVNLISARGNASDLDSSVKVLRELVQQAAPLALKIKELLSSKHAKKTE------AFWAK 117 (499)
T ss_pred HHHHHHHhhhccchhhhhhhhhccccccccchhhhhhhHHHhHHHhhhccchhhhchhhccccchhhcc------ccccc
Confidence 789999999999999999999998876655666677666666665444443222111110000000110 00000
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-hhhcccC-CCChHHHHHHHhhhhhhhHHHHHHHHHHHH---HHhh-cccchHHHHHHH
Q 014032 211 EEEEEEEEQAKMKEAVRSRKD-VALEEMT-DPTAKEAQEQAKAKTLEKHEQLCELSRALA---VLAS-ASSVSHEREEFL 284 (432)
Q Consensus 211 e~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~ls~al~---~l~~-~ss~~~Er~e~~ 284 (432)
+..- -..++.+...-.-+ ..+-..+ .-+++..-..+.+..++ ..+...|.++|+ .|-- +..+.++-.| +
T Consensus 118 ~k~s---~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~lt-rrE~~qL~rt~~d~frLvPfs~flivPf~E-l 192 (499)
T KOG1043|consen 118 EKPS---LKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELT-RRERGQLKRTCSDIFRLVPFSKFLIVPFME-L 192 (499)
T ss_pred cCcc---HHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeee-HHHhhhHHhhccchheeccceeeeeeehHH-H
Confidence 0000 00001100000000 0000000 11233344555555554 577889999999 5543 5688999999 4
Q ss_pred HH---HHHHHHHHHHHHhhcCccchHHHHHHHHHhhhhcccccCccchhhhhhHHHHHHHHHHHHHhh----hhhhHHHH
Q 014032 285 RL---VNKEIELYNSMVEKDGKVGEEEAKKAYRAAREETDQDAGEDVDEKVSSALINRVDAMLQKLEK----EIDDVDAK 357 (432)
Q Consensus 285 ~l---~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kas~rL~krV~~MI~~ld~----~i~~~dek 357 (432)
.| +|....++-+..+...+.... ... ..++..++++.|.+++.+||.++.. .+.+.- .
T Consensus 193 ~Lp~~lKlfp~~lpstfq~~kk~~~k-------------~~k-~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~ 257 (499)
T KOG1043|consen 193 LLPIFLKLFPNDLPSTFQESKKEEEK-------------LSK-KYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-E 257 (499)
T ss_pred HhHHHHhhccccchhhHHHHHHHHHH-------------hhh-hHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-H
Confidence 55 777777777777644321110 000 2246678999999999999999876 222211 3
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcC-----CCCCHHHHHHHHHhHcCCCCCc--ccHHHHHHHHhcCc
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLK-----DTLDKEGIQELIANLSKDREGK--ILVEDIVKLASQTE 422 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG-----~~lteeel~eLi~elD~D~DG~--I~~dEF~klm~~l~ 422 (432)
+..-|..+-. ..+..|.+++..+.+.+. ++++...+..+...++.+..|. +....+...|..+.
T Consensus 258 fd~f~~kvr~-~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik 328 (499)
T KOG1043|consen 258 FDRFLGKVRF-IGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIK 328 (499)
T ss_pred HHHHHHHhcc-cCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHHhc
Confidence 3444444543 466778999998876543 4788889999999999999885 55555555555543
No 53
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.70 E-value=0.0019 Score=41.62 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHH
Q 014032 359 GDRWRLLDRDYDGKVTAEEVASA 381 (432)
Q Consensus 359 ~~aF~lfD~DgdG~IS~eEL~~a 381 (432)
..+|+.+|.|+||.||.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666553
No 54
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.58 E-value=0.0019 Score=56.34 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
...+.--|..+|.|+||+++..||..+...+ .+.+.-+..++...|.|+||.|++.|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3457778999999999999999999875544 56677799999999999999999999864
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.51 E-value=0.011 Score=69.40 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhhhhhH---------HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCC-------HHHHHHHH
Q 014032 335 ALINRVDAMLQKLEKEIDDV---------DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLD-------KEGIQELI 398 (432)
Q Consensus 335 rL~krV~~MI~~ld~~i~~~---------dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lt-------eeel~eLi 398 (432)
.|..-..+|.+.++.+|... =.++.-+|..||++.+|.++..+++.+|+.+|..+| +.++..++
T Consensus 2223 Ql~qL~~rMqhnlEQqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~l 2302 (2399)
T KOG0040|consen 2223 QLDQLMMRMQHNLEQQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEIL 2302 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHH
Confidence 34455566888888776433 135677999999999999999999999999998763 23799999
Q ss_pred HhHcCCCCCcccHHHHHHHHhcC
Q 014032 399 ANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 399 ~elD~D~DG~I~~dEF~klm~~l 421 (432)
..+|++.+|.|+..||+..|-.-
T Consensus 2303 d~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2303 DLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HhcCCCCcCcccHHHHHHHHHhc
Confidence 99999999999999999988543
No 56
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.48 E-value=0.0035 Score=40.35 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.4
Q ss_pred HHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 394 IQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 394 l~eLi~elD~D~DG~I~~dEF~klm 418 (432)
++.++..+|.|+||.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999865
No 57
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.42 E-value=0.0097 Score=57.43 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
.+...|...|+|+.|.|+.+||..+|... ..+++.+-+.-||..+|.+.+|+|++.||..+-.
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~ 121 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWK 121 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Confidence 56667777888888888888888887744 3466777788888888888888888888877654
No 58
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.40 E-value=0.0071 Score=64.70 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDT---LDKEGIQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~---lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
.+.+.|..+| |++|+|+..++..++...+.. ...+++..++...+.|.+|.|+|++|+.++..+.
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 5888999999 999999999999999987643 3578999999999999999999999999875543
No 59
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=96.25 E-value=0.008 Score=41.57 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=32.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 014032 100 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 134 (432)
Q Consensus 100 v~~Ls~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL 134 (432)
+.+|+..+|+..|..+|+++.++..+|...|.+|+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999888999999999985
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=0.012 Score=59.83 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCcccc
Q 014032 359 GDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDTE 425 (432)
Q Consensus 359 ~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~e~~ 425 (432)
...|+.-|.||+|.++.+||...|.== ..++.+--|.+.+..+|.|+||+|+++||+.=|.....+.
T Consensus 166 e~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~ 233 (325)
T KOG4223|consen 166 EERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNE 233 (325)
T ss_pred HHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCC
Confidence 357889999999999999999875311 1233344577889999999999999999998776655433
No 61
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.79 E-value=0.021 Score=43.22 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 372 KVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 372 ~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
++|..|+...|+.+...+++.-+..++...|.+++|.++.+||......
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999887654
No 62
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=95.78 E-value=0.012 Score=39.17 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.0
Q ss_pred HHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 393 GIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 393 el~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
++..++..+|.|+||.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 63
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.022 Score=50.27 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhc------CC----CCCHHHHHHHHH----hHcCCCCCcccHHHHHHH
Q 014032 361 RWRLLDRDYDGKVTAEEVASAAMYL------KD----TLDKEGIQELIA----NLSKDREGKILVEDIVKL 417 (432)
Q Consensus 361 aF~lfD~DgdG~IS~eEL~~aL~~L------G~----~lteeel~eLi~----elD~D~DG~I~~dEF~kl 417 (432)
.|++.|-|++|++..=||..++... |. -+++.++..||. ..|.|+||.|+|.||.+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 6888999999999999999998754 32 135566666554 458899999999999874
No 64
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=95.18 E-value=0.053 Score=51.45 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCCCc-ccHHHHHHHHHhcCCCCCHH-HHHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 359 GDRWRLLDRDYDGK-VTAEEVASAAMYLKDTLDKE-GIQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 359 ~~aF~lfD~DgdG~-IS~eEL~~aL~~LG~~ltee-el~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
..+|+.||.+++|. |+..++..++......-+.+ +++-.++-+|.+++|.|+.+++..++..+-
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMV 134 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence 35677888888888 99999999998775544444 889999999999999999999999987653
No 65
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.16 E-value=0.026 Score=34.36 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMY 384 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~ 384 (432)
+..+|..+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 345666666666666666666666543
No 66
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=0.038 Score=56.13 Aligned_cols=67 Identities=21% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 354 VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 354 ~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
...+++..|..+|.+++|+|+..+|...++..-.+.-.++...-+..+|.|+||.|+|+++...+..
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 4567889999999999999999999999887655556677778889999999999999999988764
No 67
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.23 E-value=0.055 Score=32.85 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.2
Q ss_pred HHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 394 IQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 394 l~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
+..++..+|.+++|.|++++|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 677899999999999999999998864
No 68
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.00 E-value=0.14 Score=37.79 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhh-hhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 014032 339 RVDAMLQKLEKE-IDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMY 384 (432)
Q Consensus 339 rV~~MI~~ld~~-i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~ 384 (432)
.+..++..+... +. +..+...|..+|.|++|+|+.+|+..++..
T Consensus 9 ~~~~~l~~~g~~~~s--~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 9 EFRRALSKLGIKDLS--EEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHTTSSSSC--HHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 344555443322 33 345889999999999999999999998864
No 69
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.69 E-value=0.093 Score=57.05 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCcccchh
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDTETA 427 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~e~~~~ 427 (432)
.....|..+|.|..|+++++++..+|+..+...+++.+++++.+.|.+.+|.+.+.+|..++.....+..+
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~ 664 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTE 664 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChH
Confidence 45567999999999999999999999999889999999999999999999999999999999877665544
No 70
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=93.61 E-value=0.053 Score=53.51 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCCCCCH--HHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMY-LKDTLDK--EGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~-LG~~lte--eel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
..++..+|...|.|.||+||..|+++-++. +..++.+ ++-.-.|...|.|+||.|++++|.--+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 456888999999999999999999988763 2222211 22334678889999999999999655433
No 71
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.59 E-value=0.19 Score=38.26 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhh--hhHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 014032 338 NRVDAMLQKLEKEI--DDVDAKIGDRWRLLDRDYDGKVTAEEVASAA 382 (432)
Q Consensus 338 krV~~MI~~ld~~i--~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL 382 (432)
..+..++..+.... ...+..+..+|+.+|.|++|.|+.+|+..++
T Consensus 20 ~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 20 EELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 34555555554322 2345567888999999999999999998764
No 72
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=92.84 E-value=0.2 Score=34.76 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 014032 51 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRL 85 (432)
Q Consensus 51 Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~rl 85 (432)
+..|+.++|+.+|+-+||++-|+..-|.-||..++
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 46899999999999999999999999998888764
No 73
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=91.78 E-value=0.31 Score=33.59 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 014032 51 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRR 84 (432)
Q Consensus 51 Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~r 84 (432)
+..|+.++|++.|+-+|+++.|+..-|..||..+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999999999888765
No 74
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=91.52 E-value=0.49 Score=38.19 Aligned_cols=63 Identities=22% Similarity=0.297 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhc-CC-CCCHHHHHHHHHhHcCC----CCCcccHHHHHHHHhc
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KD-TLDKEGIQELIANLSKD----REGKILVEDIVKLASQ 420 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~-~lteeel~eLi~elD~D----~DG~I~~dEF~klm~~ 420 (432)
+|..+|..+-. +.+.+|.++|...|+.- |. ..+.+.+..+|..+..+ ..|.++++.|...+..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 36788999954 78999999999999754 55 57899999999998654 4789999999998854
No 75
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.70 E-value=0.33 Score=54.47 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
++.+.|+.+|+...|++|...-+.+|..- .++...+-.|..--|.|+||+++.+||+-.|..
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 67889999999999999999999998865 478888888888889999999999999876644
No 76
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=89.28 E-value=0.24 Score=52.37 Aligned_cols=67 Identities=15% Similarity=0.319 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc------CC----CCCH-----HHHHH--HHHhHcCCCCCcccHHHHHHHH
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL------KD----TLDK-----EGIQE--LIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L------G~----~lte-----eel~e--Li~elD~D~DG~I~~dEF~klm 418 (432)
..+.=+|.+||.||||-|+.+|+..++.-+ |. +++. -++.. +..-+..+++|++++++|.+.+
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 456678999999999999999998886321 11 1111 11222 2333567889999999999888
Q ss_pred hcCc
Q 014032 419 SQTE 422 (432)
Q Consensus 419 ~~l~ 422 (432)
..+.
T Consensus 313 e~Lq 316 (489)
T KOG2643|consen 313 ENLQ 316 (489)
T ss_pred HHHH
Confidence 6643
No 77
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=88.93 E-value=1.2 Score=37.25 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=34.5
Q ss_pred HHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 338 NRVDAMLQK-LEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 338 krV~~MI~~-ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
..+..++.+ +...+.+. ..+...|+.+|.|+||.|+.+|+..++..+
T Consensus 29 ~ELk~ll~~elg~~ls~~-~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 29 SEFQELLTQQLPHLLKDV-EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhhhhccCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 445555555 54433332 468889999999999999999999888765
No 78
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=88.76 E-value=1.9 Score=46.00 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCC--------------------------------H----------
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLD--------------------------------K---------- 391 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lt--------------------------------e---------- 391 (432)
..++.+.|+.+|.+..|+|++..-..+|..+ |.++| .
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 3467889999999999999998887776542 22211 0
Q ss_pred ----HHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 392 ----EGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 392 ----eel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
..+..+++.+|.|+.|.|+++||..+...
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l 575 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKL 575 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHH
Confidence 01344788899999999999999887654
No 79
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=86.67 E-value=2.1 Score=40.28 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCC-------------------------------------------------
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDT------------------------------------------------- 388 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~------------------------------------------------- 388 (432)
+++-..-||+|+||.|.+-|--..++++|..
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 4445567999999999999988888887766
Q ss_pred ----CCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 389 ----LDKEGIQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 389 ----lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
..++..++|++.++..+.+.+++.|+..|+....
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 4456678899999888778899999999887644
No 80
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.42 E-value=1.4 Score=47.46 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
+-+-.-|+.+-.|-+|+|+..--+..+.+- +++-.++..|..-.|.|+||-++++||+..+..+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 346678999999999999998888877754 6788899999999999999999999999987653
No 81
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=85.82 E-value=4.9 Score=48.12 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=52.6
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 360 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 360 ~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
+.|.-||+||.|.||..++..+|..- .+.+..++.-+++-...|.+...+|.+|+.-..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 47899999999999999999998754 468999999999999999999999999988653
No 82
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=84.52 E-value=1.1 Score=46.14 Aligned_cols=65 Identities=12% Similarity=0.139 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
.-|+-+|..|+.+.||++...+|-.+++.. ..+.+=.+-.++..++...+|+|++.+|.+++...
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHhC
Confidence 357789999999999999999998888754 23444457788999999999999999999987543
No 83
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=84.14 E-value=1.8 Score=46.31 Aligned_cols=64 Identities=22% Similarity=0.344 Sum_probs=48.5
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHh----HcCCCCCcccHHHHHHHHhcCcccc
Q 014032 359 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIAN----LSKDREGKILVEDIVKLASQTEDTE 425 (432)
Q Consensus 359 ~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~e----lD~D~DG~I~~dEF~klm~~l~e~~ 425 (432)
..-|--+|.|+||.|+.++|..... ..++.--+..|++. .-.-.+|+++|++|+..+-.+++.+
T Consensus 281 y~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 281 YCKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred HHHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 3447778999999999999987643 34566667888883 3345789999999999987776654
No 84
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=82.21 E-value=2 Score=35.75 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
+..+...++.+|.|++|.|+.+|+..++..+
T Consensus 52 ~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 52 PMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3468889999999999999999999998766
No 85
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=81.37 E-value=0.97 Score=48.02 Aligned_cols=52 Identities=8% Similarity=0.197 Sum_probs=46.3
Q ss_pred CCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 369 YDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 369 gdG~IS~eEL~~aL~~L-G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
..+.|+..+++++.... |..+++.-+.-++.-+|.|+||.++.+||+.+|..
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 56899999999998765 88999888888899999999999999999999853
No 86
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=80.43 E-value=4.5 Score=46.64 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=61.8
Q ss_pred HHHHHhhhhh-hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 343 MLQKLEKEID-DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDK-----EGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 343 MI~~ld~~i~-~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lte-----eel~eLi~elD~D~DG~I~~dEF~k 416 (432)
++.+.-+.++ ++..+++..|+.||....|..+++++..+++.+|.+..+ .++..++...|.+..|.++|.+|..
T Consensus 733 il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~d 812 (890)
T KOG0035|consen 733 ILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFED 812 (890)
T ss_pred HHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHh
Confidence 3333333333 346789999999999999999999999999999988765 3456677888888889999999999
Q ss_pred HHhc
Q 014032 417 LASQ 420 (432)
Q Consensus 417 lm~~ 420 (432)
.|..
T Consensus 813 dl~R 816 (890)
T KOG0035|consen 813 DLER 816 (890)
T ss_pred Hhhh
Confidence 8854
No 87
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=79.44 E-value=2.9 Score=34.68 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
+..+...|+.+|.|++|.|+.+|+...+..+
T Consensus 50 ~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 50 DAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3468889999999999999999999888765
No 88
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=79.31 E-value=2.5 Score=43.34 Aligned_cols=63 Identities=10% Similarity=0.250 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHh----c-CCCCCHHHHH-----------HHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 359 GDRWRLLDRDYDGKVTAEEVASAAMY----L-KDTLDKEGIQ-----------ELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 359 ~~aF~lfD~DgdG~IS~eEL~~aL~~----L-G~~lteeel~-----------eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
...|.+.|.|+||+..-.+|...+.. + ...-.++++. .++..+|+|.|..|++++|++--..-
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 35688999999999999999988753 2 2223333332 26888999999999999999876443
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=79.31 E-value=6 Score=30.10 Aligned_cols=46 Identities=22% Similarity=0.337 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 338 NRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 338 krV~~MI~~ld~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
+.|..++..+.-++++ .-....|+..|++++|.+..+|+...++.+
T Consensus 5 ~Evk~lLk~~NI~~~~--~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 5 KEVKKLLKMMNIEMDD--EYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHTT----H--HHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcCH--HHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 4555566655544433 346679999999999999999999887754
No 90
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=79.04 E-value=3 Score=36.59 Aligned_cols=31 Identities=13% Similarity=0.309 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 388 TLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 388 ~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
..-...+...|..+|.|+||.|+.+|+..+.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 3455678999999999999999999999875
No 91
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=78.52 E-value=2.2 Score=30.14 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.0
Q ss_pred HHHHHHhHcCCCCCcccHHHHHHHHhcCc
Q 014032 394 IQELIANLSKDREGKILVEDIVKLASQTE 422 (432)
Q Consensus 394 l~eLi~elD~D~DG~I~~dEF~klm~~l~ 422 (432)
+..++..+|.+++|.|++.+|..++..+.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 56788899999999999999999987653
No 92
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=78.31 E-value=3 Score=34.67 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
..+...|+.+|.|+||.|+.+|+...+..+
T Consensus 52 ~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 52 GVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 467778999999999999999999888765
No 93
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=77.51 E-value=3.4 Score=34.05 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
+..+...|+.+|.|++|.|+.+++..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4568889999999999999999999988765
No 94
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.13 E-value=3 Score=43.22 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
..++-.|+.+|.|.||.++..||..+- + .-.+.-|..+|...|..+||.|+-+|+..-+..
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~--l--dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIE--L--DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhh--c--cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 468899999999999999999998763 2 234567899999999999999999999876543
No 95
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=75.66 E-value=3.6 Score=34.02 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLK 386 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG 386 (432)
+..+...|+.+|.+++|.|+.+++..++..++
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 34688899999999999999999999887664
No 96
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=75.43 E-value=4 Score=43.80 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHh-------cCC-CCC-HHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMY-------LKD-TLD-KEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~-------LG~-~lt-eeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
-+.-.|+++|.+|+|.++..||...... +|. .++ ++-+.+|+..+.....|+|++.||..
T Consensus 352 SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 352 SLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred chhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 3677899999999999999999887543 232 222 34456677777767788999999976
No 97
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=74.98 E-value=5.8 Score=39.58 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=50.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
.++--..+|.|+||.+|.+||...+.-+.....-.++..++..-|.++|.++++++++..-
T Consensus 283 kkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~ 343 (362)
T KOG4251|consen 283 KKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERD 343 (362)
T ss_pred HHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHH
Confidence 3433457899999999999999997666666777889999999999999999999987653
No 98
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=74.67 E-value=4.6 Score=33.15 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
...+...|+.+|.|++|.|+.+++..++..+
T Consensus 51 ~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 51 ADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4568889999999999999999999988765
No 99
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=74.56 E-value=5.1 Score=29.91 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
...+...|..+|.+++|.|+.+++..++..+
T Consensus 32 ~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 32 RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 3457888999999999999999999887654
No 100
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=74.00 E-value=5.4 Score=32.99 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc-----CCCCCHH
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL-----KDTLDKE 392 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L-----G~~ltee 392 (432)
..+...|..+|.+++|.|+.+++..++..+ |.+++.+
T Consensus 44 ~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~ 85 (96)
T smart00027 44 TLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPAS 85 (96)
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCcc
Confidence 457788999999999999999999887543 6665543
No 101
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=71.76 E-value=4.3 Score=37.56 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhh-hhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCC-CHHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 339 RVDAMLQKLEKEI-DDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTL-DKEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 339 rV~~MI~~ld~~i-~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~l-teeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
.-...|.++.... .....+|.+ .|-.||.|.+|.+++..++.-+...- -+=++...++.+|-|+|+.|--+++.+
T Consensus 56 vp~e~i~kMPELkenpfk~ri~e---~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~ 132 (189)
T KOG0038|consen 56 VPFELIEKMPELKENPFKRRICE---VFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEK 132 (189)
T ss_pred ecHHHHhhChhhhcChHHHHHHH---HhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHH
Confidence 3344445443322 223445554 45679999999999999987775433 334566778889999999999999988
Q ss_pred HHhcCc
Q 014032 417 LASQTE 422 (432)
Q Consensus 417 lm~~l~ 422 (432)
.+..+.
T Consensus 133 ~l~~lT 138 (189)
T KOG0038|consen 133 TLTSLT 138 (189)
T ss_pred HHHHHh
Confidence 886653
No 102
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=71.23 E-value=10 Score=31.36 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
..+...|+.+|.|++|.|+.+++..++..+
T Consensus 51 ~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 51 EVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 458888999999999999999998887654
No 103
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=71.21 E-value=16 Score=31.97 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHH
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 417 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~kl 417 (432)
+.-+|-+++.-|+-..+..+++.+|...|..++.+.+..+|+.+. |+ +++|++.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 445677888888889999999999999999999999999999995 54 78888653
No 104
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=71.06 E-value=2.7 Score=33.80 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCC-------CCcccHHHHHH
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDR-------EGKILVEDIVK 416 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~-------DG~I~~dEF~k 416 (432)
+.+.++|+.+ .++.++||..||++.|. .+++.-++..+..-. -|..+|..|+.
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4688999999 78899999999998742 233455666554322 26688888864
No 105
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=69.52 E-value=9.4 Score=43.23 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 353 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 353 ~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..+..+...|+..|++.+|.++..+...++..+...+....+..++.+.+..++|++.+.+|...-...
T Consensus 133 ~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred hHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 446678889999999999999999999999988888888889999999988889999998888876543
No 106
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=67.12 E-value=8.6 Score=31.00 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
...+...|..+|.+++|.|+.+++..++..+
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3467788999999999999999999988765
No 107
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=64.27 E-value=10 Score=41.97 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=35.3
Q ss_pred HHhc-cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 014032 96 QAEG-VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 135 (432)
Q Consensus 96 ~~EG-v~~Ls~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL~ 135 (432)
.+.| +.+||+.+|+..|...|+++..-.++|.+.+..|+.
T Consensus 544 ~~~~~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~~~ 584 (584)
T TIGR00578 544 AKKGTLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKHFK 584 (584)
T ss_pred HHcCChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHHhC
Confidence 3345 999999999999999999987778999999999984
No 108
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=63.80 E-value=11 Score=40.88 Aligned_cols=34 Identities=29% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 352 DDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 352 ~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
..-|.....+|+.||+.++|.+|.+++..++...
T Consensus 104 C~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 104 CAPDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred cCchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 3346678889999999999999999999998754
No 109
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=63.76 E-value=13 Score=38.58 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
..+...|.+||.+++|.++.-+-...+.-+ |...+.+-|+--++.++.+-||.+.-.+|.-+++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq 323 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQ 323 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 356788999999999999998877777665 5667888899999999999999998877766554
No 110
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=63.42 E-value=4.6 Score=41.69 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~L-G~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
-+.-.|..+|+|++|.|...|.+-.=+.+ ...-+..-...++.-.|.|+|-+|+++|++.-+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 35667999999999999998855443222 12334556788999999999999999999987654
No 111
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=60.06 E-value=9.6 Score=37.03 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHHHHhHcCCCCCcccHHHHHHHHhcCccc
Q 014032 393 GIQELIANLSKDREGKILVEDIVKLASQTEDT 424 (432)
Q Consensus 393 el~eLi~elD~D~DG~I~~dEF~klm~~l~e~ 424 (432)
....++..+|.|.||.|++.|+..||..++..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap 131 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAP 131 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCc
Confidence 45678999999999999999999999887653
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=57.59 E-value=33 Score=31.34 Aligned_cols=62 Identities=8% Similarity=0.164 Sum_probs=46.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 360 DRWRLLDRDYDGKVTAEEVASAAMYLK---DTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 360 ~aF~lfD~DgdG~IS~eEL~~aL~~LG---~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
..|..|...+...++...+..+|+..| ..++...+.-++..+-..+...|+|++|...+..+
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 345555555667899999999998764 46899999999999877777789999999988654
No 113
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=55.78 E-value=18 Score=30.66 Aligned_cols=30 Identities=27% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
..+..+|+.+|.|+||.|+..|+...+..+
T Consensus 48 ~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 48 MAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 357788999999999999999998887654
No 114
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=54.37 E-value=17 Score=31.34 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=25.5
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
..+..+|.+-|.|++|+++.+|+.-+|.-+
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 468899999999999999999999987643
No 115
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=51.73 E-value=37 Score=30.60 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=38.3
Q ss_pred CHHHHHHHHhcCCCC------------CcCCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHhccC
Q 014032 34 SNDEILAFAKLFNDE------------LTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVE 101 (432)
Q Consensus 34 s~edIl~~a~lF~d~------------l~Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~rl~~i~~dD~~I~~EGv~ 101 (432)
+..-.++++.=|..+ -.|.||+..|...|. |++-= .|-.+|..+| |+
T Consensus 58 tA~~~M~va~~yg~~~~~~~~~~~~~~~~l~~L~~tqal~Ll---~lpee-----------eR~~fi~~~d-------v~ 116 (130)
T PF11300_consen 58 TAQRFMQVAEEYGSNQSSSSDSDSSNSSALPNLSYTQALILL---GLPEE-----------EREEFIEEND-------VE 116 (130)
T ss_pred HHHHHHHHHHHhCcccccCcccccccchHHHhhhHHHHHHHH---cCCch-----------HHHHHHHHhh-------hc
Confidence 455566666666532 235567777766654 55432 2334444444 88
Q ss_pred CCCHHHHHHHHHhc
Q 014032 102 SLSEAELRQACRDR 115 (432)
Q Consensus 102 ~Ls~~EL~~AC~~R 115 (432)
+||.-||+.|.++|
T Consensus 117 ~Mt~REL~~avke~ 130 (130)
T PF11300_consen 117 RMTVRELQQAVKER 130 (130)
T ss_pred cccHHHHHHHHhcC
Confidence 99999999998876
No 116
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=48.30 E-value=23 Score=37.46 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHhHcCCCCCcccHHHHH
Q 014032 386 KDTLDKEGIQELIANLSKDREGKILVEDIV 415 (432)
Q Consensus 386 G~~lteeel~eLi~elD~D~DG~I~~dEF~ 415 (432)
|...-...+..+|..+|.|+||.|+++||+
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 566777889999999999999999999997
No 117
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=47.38 E-value=21 Score=37.31 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=56.2
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 348 EKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLK---DTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 348 d~~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG---~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
++++..+..++.+.|..+-.++++......+-.+-..+. .++-.+.+..||..+|.|.||.++..|+..+-
T Consensus 203 ~qeL~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 203 DQELRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 334556677899999999999988888887777754432 24567899999999999999999998887664
No 118
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=47.06 E-value=1.4e+02 Score=25.21 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH-------hcCCC----CCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAM-------YLKDT----LDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~-------~LG~~----lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
.++++..|+.+ .|++|.++..-|...|+ .+|+. ..+.-+...+... ...-.|+.++|+..|..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 45888999999 78999999877776654 34432 2455666677665 34567999999998854
No 119
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=46.51 E-value=13 Score=27.94 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=17.7
Q ss_pred HHHhcCCCCCcCCCCCHHHHHHHHHHhCCCC
Q 014032 40 AFAKLFNDELTLDNISRPRLVNMCKYMGISP 70 (432)
Q Consensus 40 ~~a~lF~d~l~Ld~Lsr~qL~alck~~~l~p 70 (432)
.+.++|++. ..+++..+|..+|+++|++|
T Consensus 26 tl~~~~~~~--~~~~~~~~l~~ia~~l~~~~ 54 (63)
T PF13443_consen 26 TLSRILNGK--PSNPSLDTLEKIAKALNCSP 54 (63)
T ss_dssp HHHHHHTTT-------HHHHHHHHHHHT--H
T ss_pred HHHHHHhcc--cccccHHHHHHHHHHcCCCH
Confidence 356777766 46888899999999999887
No 120
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=43.75 E-value=20 Score=26.35 Aligned_cols=21 Identities=43% Similarity=0.507 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCC
Q 014032 100 VESLSEAELRQACRDRGLLGL 120 (432)
Q Consensus 100 v~~Ls~~EL~~AC~~RGi~~~ 120 (432)
++.||..||+.-|..-|+..+
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~g 23 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPG 23 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCC
Confidence 678999999999999999864
No 121
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=43.67 E-value=60 Score=35.60 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=40.4
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 364 LLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 364 lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
+-|.-.||-||.+|+... ..+-. .++..-...+.-+|..++|.+++++|..++...
T Consensus 82 iaD~tKDglisf~eF~af-e~~lC-~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 82 IADQTKDGLISFQEFRAF-ESVLC-APDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred hhhhcccccccHHHHHHH-Hhhcc-CchHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 346677888888888753 43322 345556667888888888889999988888654
No 122
>PF14658 EF-hand_9: EF-hand domain
Probab=43.34 E-value=38 Score=27.06 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCC-CcccHHHHHHHHHh
Q 014032 355 DAKIGDRWRLLDRDYD-GKVTAEEVASAAMY 384 (432)
Q Consensus 355 dekl~~aF~lfD~Dgd-G~IS~eEL~~aL~~ 384 (432)
+.++....+.+|++|. |.|+.+++..+|+.
T Consensus 34 e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 34 ESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5578888899999998 99999999999875
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.73 E-value=49 Score=38.03 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=46.3
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhc
Q 014032 360 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 420 (432)
Q Consensus 360 ~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~ 420 (432)
.-|..+- -+.|+|+.+.-+.++..-| ++..-+-.|..-.|.|+||++++.||--.|..
T Consensus 20 ~qF~~Lk-p~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 20 AQFGQLK-PGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHhccC-CCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 3455553 4789999999999987765 66778888888899999999999999666544
No 124
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=42.50 E-value=1.1e+02 Score=27.04 Aligned_cols=53 Identities=8% Similarity=0.114 Sum_probs=43.9
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 359 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 359 ~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
--+|-++-.-|+..||.++|..++...|..+....+..+++.+.. .++++++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 345556666778889999999999999999999999999999952 57888875
No 125
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=40.91 E-value=52 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHhcCCCC--CCCHHHHHHHHH
Q 014032 101 ESLSEAELRQACRDRGLLG--LLSVEEMRQQLR 131 (432)
Q Consensus 101 ~~Ls~~EL~~AC~~RGi~~--~~s~e~lr~~L~ 131 (432)
.++|..||+..|...||.+ .+..++|...+-
T Consensus 3 ~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il 35 (43)
T PF07498_consen 3 KSMTLSELREIAKELGIEGYSKMRKQELIFAIL 35 (43)
T ss_dssp HCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHH
Confidence 4789999999999999975 388888877653
No 126
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.33 E-value=19 Score=37.91 Aligned_cols=63 Identities=14% Similarity=0.233 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH-HhHcCCCCCcccHHHHHHH
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELI-ANLSKDREGKILVEDIVKL 417 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi-~elD~D~DG~I~~dEF~kl 417 (432)
...++++|+.+|+.++|+||..-+..+|..+...+++.....++ ..+|..+-|-|-..+|+.-
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 56789999999999999999999999998886455554444443 3456666666666666443
No 127
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=36.69 E-value=31 Score=37.14 Aligned_cols=90 Identities=20% Similarity=0.311 Sum_probs=52.0
Q ss_pred HHhccCCCCCHH-------HHHHHHhcCCCCCcCCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHH
Q 014032 25 NKVRTGAGVSND-------EILAFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQA 97 (432)
Q Consensus 25 ~kvr~G~~ps~e-------dIl~~a~lF~d~l~Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~rl~~i~~dD~~I~~ 97 (432)
+.|-.....|.. |+-.+..+|......-+-.-+.|.-.|++|++++ |+...++--++.-...-..-...+..
T Consensus 397 ~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p~~~f~~l~E~~~LL~L~~-~~~~~~~~~l~~~~~~~~~~~~~l~~ 475 (494)
T PF04437_consen 397 ESILMSNKFSRAGAAQLQFDMRALFSVFSQYTPRPEAFFKRLREACKLLNLPY-GSAKLLKEFLSKSYIKNENARKLLEE 475 (494)
T ss_dssp HTTTTTS-B-HHHHHHHHHHHHHHHTTS--TTSGG-HHHHHHHHHHHHHGGGG--CGG--TTTTSHHHHHHT--SHHHHH
T ss_pred HHhhhcCeeChhHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHcCCCC-cchhhhHHHHhhhhccchHHHHHHHH
Confidence 335544466643 5556777777755555666788999999999876 65554433333332223344566666
Q ss_pred hccCCCCHHHHHHHHHhc
Q 014032 98 EGVESLSEAELRQACRDR 115 (432)
Q Consensus 98 EGv~~Ls~~EL~~AC~~R 115 (432)
-||..||..|.+.+++.|
T Consensus 476 lgI~~Ls~~ea~~vL~rR 493 (494)
T PF04437_consen 476 LGISHLSPSEARDVLYRR 493 (494)
T ss_dssp TT-SSS-HHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHcc
Confidence 799999999999998876
No 128
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=35.50 E-value=38 Score=38.02 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHH
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDI 414 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF 414 (432)
+...|+.+|.+++|.++..+|...+..+....--+.+.-++.-+|.+++ ..+.++.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 5678999999999999999999999888655555677788888888888 7666665
No 129
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=34.86 E-value=77 Score=23.35 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 014032 51 LDNISRPRLVNMCKYMGISP 70 (432)
Q Consensus 51 Ld~Lsr~qL~alck~~~l~p 70 (432)
++.||..+|.+.|+-+|++|
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPP 22 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCC
Confidence 57899999999999999998
No 130
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.20 E-value=1.7e+02 Score=25.52 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=43.9
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHH
Q 014032 360 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 417 (432)
Q Consensus 360 ~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~kl 417 (432)
-+|-++-..|+..||.+++..++...|..+....+.-+++.+.. .++++++.-
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~ 57 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAA 57 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 35556666788899999999999999999999999999999852 577888764
No 131
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.19 E-value=18 Score=41.96 Aligned_cols=66 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcCcc
Q 014032 356 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTED 423 (432)
Q Consensus 356 ekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l~e 423 (432)
..+.++|...|.+.+|+|+..+....++. ..++...+..+....|..+.|.+++++|.-.|..+..
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~ 348 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQ 348 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhhhh
Confidence 35666899999999999999999999887 4578888999999999999999999999877755443
No 132
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=33.78 E-value=38 Score=21.13 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.4
Q ss_pred cCCCCCcccHHHHHHH
Q 014032 402 SKDREGKILVEDIVKL 417 (432)
Q Consensus 402 D~D~DG~I~~dEF~kl 417 (432)
|.|+||.|+--||.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677777777776544
No 133
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.45 E-value=1.4e+02 Score=31.84 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=47.2
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHhccCCCCHHHHHHHHHhcCCCC--CCCHHHHH
Q 014032 50 TLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLG--LLSVEEMR 127 (432)
Q Consensus 50 ~Ld~Lsr~qL~alck~~~l~p~g~~~~lr~rLr~rl~~i~~dD~~I~~EGv~~Ls~~EL~~AC~~RGi~~--~~s~e~lr 127 (432)
...-|+..+|+.+.+=+||+++|+...|..|-+..+. |..|. +.+ -.+..+|+
T Consensus 265 ~y~~l~~~~lr~kL~~lglpt~G~r~~l~~Rh~e~~~---------------------l~Nan----~Ds~~p~s~~~L~ 319 (397)
T TIGR00599 265 NYSLLTDSQIRKKLSELGLSTNGTRQLLQKRHNEWET---------------------LWNSN----CDSLEPVDKRELL 319 (397)
T ss_pred chhhcCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------------------HHHhc----cccCCCCCHHHHH
Confidence 4445788999999999999999999888877665543 22232 222 27788999
Q ss_pred HHHHHHHhhhc
Q 014032 128 QQLRDWLDLSL 138 (432)
Q Consensus 128 ~~L~~WL~Ls~ 138 (432)
.+|.+|=.-+.
T Consensus 320 ~~l~~wE~t~~ 330 (397)
T TIGR00599 320 RQLDSWERTQG 330 (397)
T ss_pred HHHHHHHHHhc
Confidence 99999986655
No 134
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=31.92 E-value=59 Score=26.86 Aligned_cols=50 Identities=28% Similarity=0.242 Sum_probs=24.4
Q ss_pred CCcccHHHHHHHHHhcC--CCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 370 DGKVTAEEVASAAMYLK--DTLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 370 dG~IS~eEL~~aL~~LG--~~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
||.|+..|...+-..+. ..+++++...++..+....+...++.+|.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45566555444432221 134555555555555544444455555555543
No 135
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=31.81 E-value=37 Score=26.38 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=24.5
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHhcC-CCCCcCCCCCHHHHHHHHH
Q 014032 20 LDEFMNKVRTGAGVSNDEILAFAKLF-NDELTLDNISRPRLVNMCK 64 (432)
Q Consensus 20 ~~~f~~kvr~G~~ps~edIl~~a~lF-~d~l~Ld~Lsr~qL~alck 64 (432)
|.+++++++.|.++|.+++-.+-..+ .+. +|..|+-++.=
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~-----~s~~qiaAfL~ 42 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAILDGE-----VSDAQIAAFLM 42 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHHHTTS-----S-HHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHHH
Confidence 67889999999999999998765554 443 34666665543
No 136
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=30.06 E-value=1.1e+02 Score=26.85 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=44.6
Q ss_pred HHhcCCCCCcccHHHHHHHHHh----------cCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHhcC
Q 014032 363 RLLDRDYDGKVTAEEVASAAMY----------LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 421 (432)
Q Consensus 363 ~lfD~DgdG~IS~eEL~~aL~~----------LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~~l 421 (432)
++||...+-+||.+++...++. -|..+|..-+-.||-+....+...++.+=+..++.-.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~y 78 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFY 78 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 4789999999999999998764 2667777778888888777777777766556666543
No 137
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=29.02 E-value=53 Score=27.46 Aligned_cols=27 Identities=30% Similarity=0.677 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCChhHHhh
Q 014032 121 LSVEEMRQQLRDWLDLSLNHSVPSSLLIL 149 (432)
Q Consensus 121 ~s~e~lr~~L~~WL~Ls~~~~ip~sLLll 149 (432)
+|++++..||+.||.- ...+|.-|--+
T Consensus 24 lt~~Ell~~Lk~~L~~--~~~LP~dL~~~ 50 (83)
T PF12095_consen 24 LTPEELLEKLKEWLQN--QDDLPPDLAKF 50 (83)
T ss_dssp E-HHHHHHHHHHHHHH--TTTS-HHHHH-
T ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHHhC
Confidence 7899999999999998 77788877543
No 138
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=28.20 E-value=58 Score=36.31 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCC----CHHHHHHHHHhHcCCCCCcccHHHHHHH
Q 014032 357 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTL----DKEGIQELIANLSKDREGKILVEDIVKL 417 (432)
Q Consensus 357 kl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~l----teeel~eLi~elD~D~DG~I~~dEF~kl 417 (432)
.+...|..||.|+||-.+..||..++...+..+ +..+.. -.+..|.++|+-|+..
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQ 374 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHH
Confidence 567889999999999999999999998775433 111111 1125688888888653
No 139
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=27.51 E-value=23 Score=34.37 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=42.0
Q ss_pred HHHHhcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 361 RWRLLDRD-YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 361 aF~lfD~D-gdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
.|..+|.. .||++|-.||.-+-.- .-+-+.-+..++...|.|+||.|.+++|..-+
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeccccCCCccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 36666764 4999999998864221 12345667889999999999999999997654
No 140
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=26.73 E-value=2.4e+02 Score=24.78 Aligned_cols=52 Identities=19% Similarity=0.315 Sum_probs=42.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 361 RWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 361 aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
++-+|+.-|. .||-+.|..++...|..+.+..+.-++..++ | +++++.+.-.
T Consensus 6 a~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe----g-~~idE~i~~~ 57 (109)
T COG2058 6 AYLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE----G-VDIDEVIKNA 57 (109)
T ss_pred HHHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc----C-CCHHHHHHHh
Confidence 3445554343 9999999999999999999999999999996 3 5888887644
No 141
>PRK00523 hypothetical protein; Provisional
Probab=26.62 E-value=1.2e+02 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHc
Q 014032 369 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 402 (432)
Q Consensus 369 gdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD 402 (432)
.+-.|+.+-++..+..+|.++++.+++.+++.+.
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999999999998773
No 142
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=26.10 E-value=3e+02 Score=24.00 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=36.6
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 372 KVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 372 ~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
.||.+++..+|...|..+.+..+..+++.+. .+++++++.-+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~-----GkdIeElI~~a 57 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE-----DVNIEEAIKKA 57 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc-----CCCHHHHHHhc
Confidence 8999999999999999999999999999984 26888887543
No 143
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=26.07 E-value=1.3e+02 Score=23.98 Aligned_cols=34 Identities=6% Similarity=0.215 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHc
Q 014032 369 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 402 (432)
Q Consensus 369 gdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD 402 (432)
.+-.|+.+-++..+..+|.++++.+++.++..+.
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999999999988763
No 144
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=26.04 E-value=2e+02 Score=21.71 Aligned_cols=35 Identities=20% Similarity=0.186 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhc-cCCCCCHHHHHHHHhcCCCCC
Q 014032 15 KTAEDLDEFMNKVR-TGAGVSNDEILAFAKLFNDEL 49 (432)
Q Consensus 15 ~~~~~~~~f~~kvr-~G~~ps~edIl~~a~lF~d~l 49 (432)
..-+.+..++...+ .|.+||...|...|..|-..+
T Consensus 6 ~~E~~L~~wi~~~~~~g~~it~~~i~~~A~~i~~~~ 41 (66)
T smart00674 6 LLEKALYEWILRQEALGIPISGEQIREKALEILQRL 41 (66)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHc
Confidence 34456777777776 699999999999988764433
No 145
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.66 E-value=1.8e+02 Score=20.18 Aligned_cols=31 Identities=13% Similarity=0.282 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHHHhcCCCC--CC-CHHHHHHHHH
Q 014032 101 ESLSEAELRQACRDRGLLG--LL-SVEEMRQQLR 131 (432)
Q Consensus 101 ~~Ls~~EL~~AC~~RGi~~--~~-s~e~lr~~L~ 131 (432)
++-|.++|+.-+...||.. .. ++++|...++
T Consensus 2 dtWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSHGIPVPKSAKTRDELLKLAK 35 (38)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 5678999999999999985 34 7888887665
No 146
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=25.14 E-value=94 Score=29.43 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=24.9
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHc
Q 014032 366 DRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 402 (432)
Q Consensus 366 D~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD 402 (432)
..|.+|++++++|...+..-+..++.++|..++..-|
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 4578899999999999887777889999999988754
No 147
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=23.92 E-value=3.7e+02 Score=23.26 Aligned_cols=41 Identities=10% Similarity=0.302 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 373 VTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 373 IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
||.+++..+|...|..++.+.+..+++.+. | +++++++.-.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa----G-k~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN----G-KNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc----C-CCHHHHHHHH
Confidence 999999999999999999999999999984 2 5788887654
No 148
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=23.05 E-value=1.7e+02 Score=21.21 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 375 AEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 375 ~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
.+|+..+|..+| ++..++...+..+.. ...++.++.++..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 367888899888 567889999888875 3446788877653
No 149
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=22.41 E-value=1.6e+02 Score=23.67 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.5
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 014032 100 VESLSEAELRQACRDRGLLGLLSVEEMRQQLR 131 (432)
Q Consensus 100 v~~Ls~~EL~~AC~~RGi~~~~s~e~lr~~L~ 131 (432)
+-+||..+....|..|||....+.+++...|.
T Consensus 43 lag~s~~eF~~~L~~~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 43 LAGMSRWEFLELLKERGIPINYDEEELEEDLE 74 (76)
T ss_pred HhCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 45789999999999999995589999988775
No 150
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=22.35 E-value=2.4e+02 Score=31.30 Aligned_cols=155 Identities=21% Similarity=0.272 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHhcc---CCCCCHHHHHH--HHhcCCC----CCcCCCCCHHHHHHHHHHh-CCCCCCCc-HHHHHHHH
Q 014032 14 KKTAEDLDEFMNKVRT---GAGVSNDEILA--FAKLFND----ELTLDNISRPRLVNMCKYM-GISPFGTD-AYLRYMLR 82 (432)
Q Consensus 14 ~~~~~~~~~f~~kvr~---G~~ps~edIl~--~a~lF~d----~l~Ld~Lsr~qL~alck~~-~l~p~g~~-~~lr~rLr 82 (432)
.+.++-|.+||..|+. |..++.+|.+. |+.||.- -..+-.++..++..|.++- .|.|||.- .-++.|+.
T Consensus 135 ~qn~~~~~dlFtel~~y~~~~~~nlee~l~eff~~Lf~~~f~~l~~~~~~~~Dy~eCl~~~~~~l~pFGdiPq~l~~Q~t 214 (563)
T KOG3821|consen 135 PQNAELFNDLFTELKLYYVGSNVNLEETLNEFFARLFEVMFSQLNPQYDFTLDYLECLSKARRELKPFGDIPQKLMLQVT 214 (563)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHhcCCcccchHHHHHHHh
Confidence 4567889999999994 88899999985 7788864 2256678888999999876 69999922 23444444
Q ss_pred HHHHH----HHHhhHHHH-HhccCCCCHHH--------HHHHHHhcCCCCC-----CCHHHHHHHHHHHHhhhcC-CCCC
Q 014032 83 RRLQE----IKNDDKMIQ-AEGVESLSEAE--------LRQACRDRGLLGL-----LSVEEMRQQLRDWLDLSLN-HSVP 143 (432)
Q Consensus 83 ~rl~~----i~~dD~~I~-~EGv~~Ls~~E--------L~~AC~~RGi~~~-----~s~e~lr~~L~~WL~Ls~~-~~ip 143 (432)
+-+.- +...-..+- -.+++.++..+ +..--+-||+.+. .=..-||-=|.+-.+|-.. ...=
T Consensus 215 rsl~~ar~Flq~L~~g~eVv~~~~~v~~s~~C~raLlkM~yCp~CqGl~~~kPC~gYC~NVmrGClA~~adLd~~W~~~i 294 (563)
T KOG3821|consen 215 RSLVAARTFLQGLEVGIEVVSEVDKVPFSEECSRALLKMIYCPHCQGLPSVKPCYGYCLNVMRGCLANQADLDPEWRNYI 294 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHhcchhccCCCccCCcHHHHHHHHHHHhhhhcccchHHHHHH
Confidence 43322 222222221 12455555222 1222345777531 1223455555555553332 3455
Q ss_pred hhHHhhhhhhccCCCCChHHHHHHHHccCCh
Q 014032 144 SSLLILSRAFSVSGKVRPEEAVQATLSSLPD 174 (432)
Q Consensus 144 ~sLLllsra~~~~~~~~~~~~l~~~ls~lp~ 174 (432)
.||+.|+..+.-+ ++ +..||-+|+=
T Consensus 295 dSl~~L~~~l~g~-----~~-iesvl~~i~v 319 (563)
T KOG3821|consen 295 DSLLELADKLEGP-----FN-IESVLLPIHV 319 (563)
T ss_pred HHHHHHHHhhcCc-----ch-HHHHHhhhhh
Confidence 6777787777553 22 6666666654
No 151
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=22.19 E-value=63 Score=28.73 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 388 TLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 388 ~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
.+++++.+.+-.++-.|..|.+.|-||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 47899999999999999999999999998764
No 152
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=22.12 E-value=1.8e+02 Score=24.14 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhhhhH--HHHH---HHHHHHhcCCCCCcccHHHHHHH
Q 014032 339 RVDAMLQKLEKEIDDV--DAKI---GDRWRLLDRDYDGKVTAEEVASA 381 (432)
Q Consensus 339 rV~~MI~~ld~~i~~~--dekl---~~aF~lfD~DgdG~IS~eEL~~a 381 (432)
||.+++..|-++++.+ +..+ ....+.++.+.+|+|+.+-+...
T Consensus 1 ~~~~l~~~I~~QvEfYFSd~NL~~D~fL~~~~~~~~dG~Vpl~~i~~F 48 (82)
T cd08032 1 RVKQLLADIAKQVDFWFGDVNLHKDRFLREQIEKSRDGYIDISLLVSF 48 (82)
T ss_pred CHHHHHHHHHHHHHhhcchhhcccCHHHHHHhcCCCCCCEeHHHHhcc
Confidence 3556666676666655 2221 22345688889999999876654
No 153
>TIGR00444 mazG MazG family protein. This family of prokaryotic proteins has no known function. It includes the uncharacterized protein MazG in E. coli.
Probab=22.07 E-value=2e+02 Score=28.55 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHhc--cCCCCHHHHHHHH
Q 014032 58 RLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEG--VESLSEAELRQAC 112 (432)
Q Consensus 58 qL~alck~~~l~p~g~~~~lr~rLr~rl~~i~~dD~~I~~EG--v~~Ls~~EL~~AC 112 (432)
-|+++|+++|+.|= .-||+..++-.+.....-..+...| +..+|.+||....
T Consensus 191 alvnlAr~~giDpE---~ALr~a~~KF~~Rf~~~E~~~~~~g~~~~~~slee~~~lW 244 (248)
T TIGR00444 191 ATVNLARHLKTDAE---IALQKANEKFERRFREVERIVAARGLELTGVDLEEMEELW 244 (248)
T ss_pred HHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHH
Confidence 47899999999984 4677777766666777778888888 6788888887654
No 154
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.84 E-value=5e+02 Score=27.33 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=22.4
Q ss_pred HHHHHHHHhHcCC-CCCcccHHHHHHHHhcCc
Q 014032 392 EGIQELIANLSKD-REGKILVEDIVKLASQTE 422 (432)
Q Consensus 392 eel~eLi~elD~D-~DG~I~~dEF~klm~~l~ 422 (432)
.-+++.|-.++.. .+|.|+|+.|++-++.+.
T Consensus 313 ~aieD~i~~L~~~~r~G~i~l~~yLr~VR~ls 344 (365)
T KOG2391|consen 313 LAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLS 344 (365)
T ss_pred hHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHH
Confidence 3455556666543 689999999999887664
No 155
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=21.69 E-value=1.2e+02 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=33.3
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCC
Q 014032 369 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDR 405 (432)
Q Consensus 369 gdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~ 405 (432)
.++.++...|...|..-|..++++.|...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 5678999999999998899999999999999998765
No 156
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=21.55 E-value=3e+02 Score=26.11 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCH-------HHHHHHHHhHcCCCCCcccHHHHHHHH
Q 014032 355 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDK-------EGIQELIANLSKDREGKILVEDIVKLA 418 (432)
Q Consensus 355 dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lte-------eel~eLi~elD~D~DG~I~~dEF~klm 418 (432)
.+++.++|..+++.+.+.+|..|+..+++.-....+. -++.-+.. +-.|.||.+.-++...+.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHHhhhc
Confidence 4678999999999999999999999998864322211 12222222 235789999988877664
No 157
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=21.07 E-value=3e+02 Score=23.18 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=34.9
Q ss_pred CcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHHHHh
Q 014032 371 GKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 419 (432)
Q Consensus 371 G~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~klm~ 419 (432)
..||++||....+..|..++..+...++.-+-.+.=.-.+-++-..++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 4688899999888888899998888888887655433344444444443
No 158
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.90 E-value=1.7e+02 Score=23.77 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHc
Q 014032 369 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 402 (432)
Q Consensus 369 gdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD 402 (432)
.+-.|+.+-++..+..+|.++++.+++++++.+.
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4468999999999999999999999999988764
No 159
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=20.68 E-value=1.9e+02 Score=26.69 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=31.6
Q ss_pred HHHHHHHhccCCCCCHHHHHHHHhcCCCCCcCCCCCHHHHHHHHHHhCCCC
Q 014032 20 LDEFMNKVRTGAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCKYMGISP 70 (432)
Q Consensus 20 ~~~f~~kvr~G~~ps~edIl~~a~lF~d~l~Ld~Lsr~qL~alck~~~l~p 70 (432)
+..+.+|++...++|.+||.++++.|.- |..+|.-+....|..|
T Consensus 36 ~ssa~RKL~G~~~ftl~EI~~Ia~~fgv-------S~d~l~g~~~~~~~~p 79 (147)
T PF08667_consen 36 YSSAYRKLNGKSPFTLEEIKKIAKHFGV-------SPDELFGHSDNSGQNP 79 (147)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhCc-------CHHHHHhhhhcccCCc
Confidence 4577888887888999999999999964 3344554445555555
No 160
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.67 E-value=4.2e+02 Score=22.82 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhh-----hhhhHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccH
Q 014032 337 INRVDAMLQKLEK-----EIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILV 411 (432)
Q Consensus 337 ~krV~~MI~~ld~-----~i~~~dekl~~aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~ 411 (432)
.+.+.+++.+... ....+...+..+|.. ..+-.=.++=+..++..++..++.++=..++..++.=.+|.|++
T Consensus 12 y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~---~~~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l 88 (117)
T PF08349_consen 12 YRELGRLVANAGKRPLEEVFEEYEELLMEALSK---PPTRGSHINVLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPL 88 (117)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhc---CCCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccH
Confidence 3445555555322 233344444444442 22222234556666777778899988888888888788899999
Q ss_pred HHHHHHHhc
Q 014032 412 EDIVKLASQ 420 (432)
Q Consensus 412 dEF~klm~~ 420 (432)
...+.++..
T Consensus 89 ~~~l~~L~~ 97 (117)
T PF08349_consen 89 SVPLTLLKH 97 (117)
T ss_pred HHHHHHHHH
Confidence 888877654
No 161
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=20.66 E-value=3.8e+02 Score=23.53 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=41.2
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHcCCCCCcccHHHHHH
Q 014032 361 RWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 416 (432)
Q Consensus 361 aF~lfD~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD~D~DG~I~~dEF~k 416 (432)
+|-+.-..|+..||.++|..++...|..+....+..+++.+.. .++++++.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 4444444577789999999999999999999999999999942 57888874
No 162
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=20.57 E-value=1.4e+02 Score=28.25 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=30.8
Q ss_pred cCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHhHc
Q 014032 366 DRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 402 (432)
Q Consensus 366 D~DgdG~IS~eEL~~aL~~LG~~lteeel~eLi~elD 402 (432)
-.|.+|++.+++|...++.-+..++.+.+.+++..-|
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 3578899999999999876566789999999887754
No 163
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=20.11 E-value=1.1e+02 Score=27.26 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 014032 358 IGDRWRLLDRDYDGKVTAEEVASAAMYL 385 (432)
Q Consensus 358 l~~aF~lfD~DgdG~IS~eEL~~aL~~L 385 (432)
+...+.+||++++|.|++-.++.++-.+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 5667889999999999999999887543
Done!