BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014033
         (432 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Thermoresistibile
 pdb|3OEC|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Thermoresistibile
 pdb|3OEC|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Thermoresistibile
 pdb|3OEC|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
           Mycobacterium Thermoresistibile
          Length = 317

 Score = 32.0 bits (71), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)

Query: 60  LDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHID 119
           LD  + S EE++++V        R     +D       +R+L S QA +   LAE  HID
Sbjct: 85  LDYAQGSPEELKETVRLVEEQGRRIIARQAD-------VRDLASLQAVVDEALAEFGHID 137

Query: 120 SLKGSESFASKNDLLNLENKEPSDL 144
            L  +   +++ ++++L +++ SD+
Sbjct: 138 ILVSNVGISNQGEVVSLTDQQWSDI 162


>pdb|1K8I|B Chain B, Crystal Structure Of Mouse H2-Dm
          Length = 191

 Score = 32.0 bits (71), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 23/159 (14%)

Query: 40  YVKSKCSLNEKEIRQLCSYLL----DLKRASAEEMRKSVYANYAAFIRTSKEISDLEGEL 95
           +V+S C LN+    Q  +Y +    DL      ++ K V   +    R ++ IS      
Sbjct: 5   HVESTCVLNDAGTPQDFTYCVSFNKDLLACWDPDVGKIVPCEFGVLSRLAEIIS------ 58

Query: 96  SSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLL 155
               N+L+ Q +LIH L  G+  D    ++ F    D+L    + PS     +  F    
Sbjct: 59  ----NILNEQESLIHRLQNGLQ-DCATHTQPFW---DVLTHRTRAPSVRVAQTTPFNTRE 110

Query: 156 DVLLA-----ERRIDEALTALDEGEHLAAEAKQTKTLDP 189
            V+LA         D  +T +  G+ + + + + KT  P
Sbjct: 111 PVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQP 149


>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
 pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
 pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
 pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
 pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
 pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
 pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
 pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
 pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
 pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
 pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
          Length = 1289

 Score = 29.3 bits (64), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 264  TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-TAYTSELVM 305
            +S G  YT  L  L+F+++A++ C+ L +   E T Y  ++++
Sbjct: 1015 SSMGNGYTFELESLIFASLARSVCEILDLDSSEVTVYGDDIIL 1057


>pdb|3MMP|G Chain G, Structure Of The Qb Replicase, An Rna-Dependent Rna
           Polymerase Consisting Of Viral And Host Proteins
 pdb|3MMP|F Chain F, Structure Of The Qb Replicase, An Rna-Dependent Rna
           Polymerase Consisting Of Viral And Host Proteins
          Length = 589

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 264 TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE-TAYTSELVM 305
           +S G  YT  L  L+F+++A++ C+ L +   E T Y  ++++
Sbjct: 321 SSMGNGYTFELESLIFASLARSVCEILDLDSSEVTVYGDDIIL 363


>pdb|2D2S|A Chain A, Crystal Structure Of The Exo84p C-Terminal Domains
          Length = 235

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 5/169 (2%)

Query: 155 LDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID-RRQKLADQLAEA 213
           +D+ LA  R + A+  L + E    +  +  + +  ML++L +  I+ RR+ ++ +L+++
Sbjct: 25  IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQS 84

Query: 214 ACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAA 273
               S     L++    + KLG   +A  L L       Q  +  L+  S      Y   
Sbjct: 85  IL-SSNEIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLI--LQIGSVDNPTNYLTQ 141

Query: 274 LSQLVFSAIAQAACDSLAIFGKETA-YTSELVMWATRQTEAFAHLVKRH 321
           L+ + F  I +   D   IF +  A  +S LV W + + +    L+ + 
Sbjct: 142 LAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLIDKQ 190


>pdb|3P52|A Chain A, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
           Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
 pdb|3P52|B Chain B, Nh3-Dependent Nad Synthetase From Campylobacter Jejuni
           Subsp. Jejuni Nctc 11168 In Complex With The Nitrate Ion
          Length = 249

 Score = 28.9 bits (63), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 51/144 (35%), Positives = 69/144 (47%), Gaps = 25/144 (17%)

Query: 76  ANYAAFIRTS--KEISDLEGEL----SSIRNLLSTQATLIHGLAEGVH-IDSLKGSESFA 128
            N+AA IR S   + S L+  L    S+   LL    T+   LA   + I SL  SE +A
Sbjct: 108 GNFAARIRXSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKSEIYA 167

Query: 129 SKNDLLNL-EN---KEPS-DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQ 183
                LNL EN   K PS DL  W  +  D  D+  +  +IDE L AL+  +      K 
Sbjct: 168 LAK-YLNLHENFIKKAPSADL--WENQ-SDEADLGFSYTKIDEGLKALETNDE-----KL 218

Query: 184 TKTLDPAMLISLENTIIDRRQKLA 207
            +TLDP+++  L+N    R QK A
Sbjct: 219 LRTLDPSLIAXLKN----RXQKNA 238


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,097,865
Number of Sequences: 62578
Number of extensions: 354947
Number of successful extensions: 955
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 15
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)