Query 014033
Match_columns 432
No_of_seqs 169 out of 265
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 01:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2215 Exocyst complex subuni 100.0 3.4E-32 7.3E-37 285.1 14.9 401 24-429 3-408 (673)
2 KOG2346 Uncharacterized conser 100.0 1.2E-29 2.7E-34 252.0 19.9 307 27-387 25-342 (636)
3 PF04124 Dor1: Dor1-like famil 99.9 6.8E-25 1.5E-29 220.1 30.0 316 46-380 6-337 (338)
4 KOG2069 Golgi transport comple 99.9 4.5E-20 9.8E-25 188.5 30.4 340 31-395 17-376 (581)
5 PF08700 Vps51: Vps51/Vps67; 99.8 1.2E-17 2.7E-22 134.8 12.3 85 30-114 1-86 (87)
6 PF15469 Sec5: Exocyst complex 99.3 3.4E-11 7.3E-16 110.7 14.7 172 68-247 2-181 (182)
7 KOG2215 Exocyst complex subuni 99.2 2.3E-10 4.9E-15 121.4 13.8 234 143-398 282-521 (673)
8 PF04100 Vps53_N: Vps53-like, 98.9 9.5E-06 2.1E-10 83.0 33.7 339 33-392 2-383 (383)
9 PF10475 DUF2450: Protein of u 98.8 5.7E-07 1.2E-11 88.8 21.8 217 30-258 8-234 (291)
10 PF10191 COG7: Golgi complex c 98.6 5.4E-05 1.2E-09 84.1 31.7 305 26-350 1-330 (766)
11 KOG2033 Low density lipoprotei 98.6 4.4E-05 9.6E-10 80.5 28.6 266 42-325 11-311 (863)
12 PF06248 Zw10: Centromere/kine 98.6 0.00037 8.1E-09 75.5 36.0 377 47-429 7-468 (593)
13 KOG2347 Sec5 subunit of exocys 97.9 0.0078 1.7E-07 65.7 27.0 348 30-395 166-606 (934)
14 PF06148 COG2: COG (conserved 97.8 1.6E-05 3.4E-10 69.4 2.6 86 28-115 6-91 (133)
15 KOG2180 Late Golgi protein sor 97.7 0.091 2E-06 56.5 29.1 348 25-394 9-400 (793)
16 PF10392 COG5: Golgi transport 97.5 0.0018 3.8E-08 56.4 11.6 88 29-116 2-95 (132)
17 KOG3691 Exocyst complex subuni 96.8 0.04 8.7E-07 60.3 15.5 156 46-216 42-206 (982)
18 PF04048 Sec8_exocyst: Sec8 ex 96.7 0.0082 1.8E-07 52.9 8.4 121 29-158 15-142 (142)
19 KOG2307 Low density lipoprotei 96.5 1.1 2.3E-05 47.4 23.1 103 5-111 4-107 (705)
20 PF07393 Sec10: Exocyst comple 93.3 17 0.00036 40.6 22.4 222 165-393 75-327 (710)
21 KOG2176 Exocyst complex, subun 88.9 43 0.00093 37.3 27.7 134 40-179 36-171 (800)
22 KOG4182 Uncharacterized conser 88.4 36 0.00078 35.8 24.0 219 26-255 2-238 (828)
23 PF06419 COG6: Conserved oligo 81.7 87 0.0019 34.4 31.2 95 202-296 167-279 (618)
24 PF01031 Dynamin_M: Dynamin ce 72.6 28 0.0006 34.2 9.8 79 314-398 195-278 (295)
25 PF04420 CHD5: CHD5-like prote 72.5 12 0.00026 33.6 6.5 62 50-115 40-102 (161)
26 PF04129 Vps52: Vps52 / Sac2 f 68.6 1.7E+02 0.0037 31.3 26.0 74 37-116 6-79 (508)
27 PF15290 Syntaphilin: Golgi-lo 60.2 45 0.00097 32.6 7.9 48 35-83 54-107 (305)
28 PF04212 MIT: MIT (microtubule 58.9 56 0.0012 24.5 7.0 40 161-201 18-57 (69)
29 PF09730 BicD: Microtubule-ass 56.0 1.8E+02 0.004 32.5 12.8 76 31-107 244-321 (717)
30 smart00762 Cog4 COG4 transport 55.3 93 0.002 31.2 9.8 88 204-292 6-101 (324)
31 cd02681 MIT_calpain7_1 MIT: do 52.5 79 0.0017 24.7 6.9 41 161-201 19-59 (76)
32 PF08318 COG4: COG4 transport 51.3 2.4E+02 0.0053 28.2 12.2 90 205-295 7-108 (331)
33 cd02680 MIT_calpain7_2 MIT: do 51.2 73 0.0016 24.8 6.5 51 161-217 19-73 (75)
34 KOG4572 Predicted DNA-binding 51.0 4.2E+02 0.0091 30.1 20.3 197 72-324 349-545 (1424)
35 smart00745 MIT Microtubule Int 49.9 1.1E+02 0.0024 23.2 7.6 44 161-205 21-64 (77)
36 cd02683 MIT_1 MIT: domain cont 49.6 1.1E+02 0.0024 23.8 7.4 49 161-210 19-70 (77)
37 PF09577 Spore_YpjB: Sporulati 47.1 1.9E+02 0.0042 27.6 10.0 62 146-207 3-65 (232)
38 PF04305 DUF455: Protein of un 47.0 1.3E+02 0.0029 29.1 9.0 127 269-397 69-209 (253)
39 PF04444 Dioxygenase_N: Catech 45.2 42 0.00091 26.1 4.3 50 198-247 3-56 (74)
40 PF04190 DUF410: Protein of un 44.6 3E+02 0.0065 26.6 13.5 78 159-252 1-80 (260)
41 cd02678 MIT_VPS4 MIT: domain c 44.2 1.4E+02 0.0031 22.8 7.5 51 161-213 19-69 (75)
42 PF13176 TPR_7: Tetratricopept 43.3 30 0.00064 22.3 2.8 20 156-175 7-26 (36)
43 cd02682 MIT_AAA_Arch MIT: doma 40.9 1.3E+02 0.0028 23.5 6.4 40 160-201 18-58 (75)
44 cd02684 MIT_2 MIT: domain cont 39.5 1.8E+02 0.0038 22.5 7.4 52 161-214 19-70 (75)
45 cd02656 MIT MIT: domain contai 37.1 1.8E+02 0.004 22.0 7.7 43 161-204 19-61 (75)
46 COG2882 FliJ Flagellar biosynt 36.0 3.1E+02 0.0068 24.3 8.9 30 75-110 66-95 (148)
47 COG2959 HemX Uncharacterized e 35.6 5.1E+02 0.011 26.6 16.3 104 51-183 64-172 (391)
48 PRK04863 mukB cell division pr 35.2 9.4E+02 0.02 29.6 17.6 61 25-85 740-826 (1486)
49 PF08631 SPO22: Meiosis protei 34.8 4.3E+02 0.0093 25.5 11.9 187 158-367 3-191 (278)
50 cd02679 MIT_spastin MIT: domai 33.7 2.4E+02 0.0051 22.2 7.0 50 161-210 21-76 (79)
51 PF10516 SHNi-TPR: SHNi-TPR; 30.7 97 0.0021 20.7 3.7 26 156-181 9-34 (38)
52 COG2231 Uncharacterized protei 30.1 73 0.0016 29.9 4.0 19 27-45 133-151 (215)
53 PF09976 TPR_21: Tetratricopep 30.0 2.5E+02 0.0055 23.9 7.5 21 155-175 55-75 (145)
54 TIGR02878 spore_ypjB sporulati 29.5 5.1E+02 0.011 24.8 9.8 62 146-207 3-66 (233)
55 PF09905 DUF2132: Uncharacteri 29.4 48 0.001 24.9 2.2 25 291-315 34-63 (64)
56 PF02151 UVR: UvrB/uvrC motif; 28.8 92 0.002 20.4 3.4 30 147-176 3-32 (36)
57 cd02677 MIT_SNX15 MIT: domain 28.3 2.8E+02 0.0061 21.4 7.7 53 161-214 19-71 (75)
58 PF13374 TPR_10: Tetratricopep 27.4 93 0.002 19.7 3.3 26 156-181 10-35 (42)
59 PRK11020 hypothetical protein; 27.0 2.4E+02 0.0053 23.8 6.2 49 50-101 5-53 (118)
60 PF14182 YgaB: YgaB-like prote 26.0 3.3E+02 0.0071 21.5 9.1 55 50-107 14-68 (79)
61 COG1730 GIM5 Predicted prefold 26.0 4.1E+02 0.0088 23.5 7.9 30 86-115 20-49 (145)
62 PF10158 LOH1CR12: Tumour supp 25.0 4.5E+02 0.0099 22.7 9.6 40 75-114 76-115 (131)
63 COG1516 FliS Flagellin-specifi 24.9 4.6E+02 0.01 22.8 8.7 87 147-237 30-116 (132)
64 PF10691 DUF2497: Protein of u 24.6 1.2E+02 0.0027 23.5 3.9 35 350-384 29-63 (73)
65 PF13181 TPR_8: Tetratricopept 24.3 1.3E+02 0.0029 18.3 3.5 22 156-177 9-30 (34)
66 PF07719 TPR_2: Tetratricopept 23.2 1.3E+02 0.0029 18.1 3.3 20 157-176 10-29 (34)
67 KOG3067 Translin family protei 23.2 2.7E+02 0.0059 25.8 6.3 35 70-104 3-38 (226)
68 PF00515 TPR_1: Tetratricopept 22.5 1.4E+02 0.003 18.3 3.3 21 156-176 9-29 (34)
69 TIGR00756 PPR pentatricopeptid 22.0 1.4E+02 0.0031 17.8 3.3 22 154-175 6-27 (35)
70 KOG2115 Vacuolar sorting prote 21.4 1.3E+03 0.028 26.7 25.0 150 53-214 242-398 (951)
71 PF14922 FWWh: Protein of unkn 21.3 2.6E+02 0.0056 25.1 5.9 32 204-246 75-106 (161)
72 KOG0543 FKBP-type peptidyl-pro 21.3 6.4E+02 0.014 26.1 9.3 103 143-247 193-317 (397)
73 PF07721 TPR_4: Tetratricopept 21.3 1.1E+02 0.0023 18.1 2.4 17 156-172 9-25 (26)
74 PF05377 FlaC_arch: Flagella a 20.9 2E+02 0.0043 21.1 4.1 26 89-114 3-28 (55)
75 PF13424 TPR_12: Tetratricopep 20.9 1.6E+02 0.0034 21.9 3.9 27 156-182 13-39 (78)
76 PF06875 PRF: Plethodontid rec 20.9 2.8E+02 0.006 26.1 6.1 49 29-86 66-119 (214)
77 PF05082 Rop-like: Rop-like; 20.4 2.3E+02 0.0051 21.5 4.5 30 86-115 2-31 (66)
78 PF13041 PPR_2: PPR repeat fam 20.3 1.4E+02 0.0031 20.3 3.3 22 154-175 9-30 (50)
No 1
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=3.4e-32 Score=285.06 Aligned_cols=401 Identities=32% Similarity=0.408 Sum_probs=343.1
Q ss_pred hhhhcccCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 014033 24 EEGLNLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLS 103 (432)
Q Consensus 24 ~~~~~~~~~~~Fd~e~Yv~~~l~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~ 103 (432)
.++...|..+.|+|+.|+++.....+++|+++|+++..+++++++.|+++||.||.+||++|+||++||.||+++.+.+.
T Consensus 3 ~~~~s~f~~~~~t~~~~i~~~~~~~e~dl~~~~~~~~~l~~as~e~~r~~~~~ny~~fI~~skEi~~le~el~~l~~~l~ 82 (673)
T KOG2215|consen 3 EDDDSSFEDEKITPSSYIPSKSKKKESDLQQLCSELVALNKASAETLRQKVSMNYKAFIRTSKEISDLEMELYQLPKFLI 82 (673)
T ss_pred CCccccCcccccCccccccchhhhhhhhHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhcCcccccccchHHHhHHhhh
Confidence 34556799999999999999986667999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcchhhhh-cccccccccccccCCC-CCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 014033 104 TQATLIHGLAEGVHIDSLKGS-ESFASKNDLLNLENKE-PSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEA 181 (432)
Q Consensus 104 ~~~~~i~~L~~~~~~~~l~~~-~e~~~~~~l~~~~~~~-~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~ 181 (432)
+|.++++++.++++.+..... .++.+++ +...++.. +.....|+.++++.|+.+...+ .+.|...++..+.....-
T Consensus 83 ~Q~~~~~~l~~~~~~d~~~~~s~~s~sn~-~~~~~~~~l~~~~~~~~~~fl~~l~~~~~~~-~dg~l~~~D~~~~~~~q~ 160 (673)
T KOG2215|consen 83 EQNNVIQSLLNGVLQDLSEDESLESLSNT-LLSLEDIHLGDVVKNLVKGFLKNLNTLLFES-VDGALEAFDFEKFLPSQK 160 (673)
T ss_pred hccchHHHhhccccccccccccccccCCc-cccccCCchhHHHHHHHHHHHHhhhhhhhcc-chHHHhhcchhhhccchH
Confidence 999999999999753322211 2222221 11112221 2256789999999999999999 899988876544321110
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccc
Q 014033 182 KQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRP 261 (432)
Q Consensus 182 ~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~ 261 (432)
-.....+.. ....+-.++.+...|++++.+...++++...++..++-.|+++|.++.++...++.+..|+...+...++
T Consensus 161 ~~~~~~~~~-L~~~~~~~~~r~~~l~d~~~~~a~~~~~~~~e~~~a~~~li~l~~~~~~~~i~~~~~~~~~~~~~ea~R~ 239 (673)
T KOG2215|consen 161 TLKTDFSHD-LNSVKITHDKRKESLTDLSLRLAAQINIKDEESWEAQLNLIRLGYSRMYHNILAQRPTLWVNMLIQAKRL 239 (673)
T ss_pred HHHHHHHhh-hhhhhhhhchhhhHHHHHHHHHhhccccchHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHH
Confidence 000011111 4566777899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccchHHHhHHHHHHHHHHHHHHHHHhcCCC--CcchhhhHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHH
Q 014033 262 SSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKE--TAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECV 339 (432)
Q Consensus 262 ~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~--~~~~S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~~~l~~~~ecv 339 (432)
.-..++..|-+.++.+.|..+..+..+-...|+++ +++...-+.|...+++.|-.+|+.+.+..+..+..++..+.|.
T Consensus 240 ~l~~~~~~~qa~~~~~~~~~~S~A~~e~~~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~~ 319 (673)
T KOG2215|consen 240 SLQTSPMERQATFPKLRFSAISWALTESLISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASACL 319 (673)
T ss_pred HHhhCccccccccchHHHhcCCcccCcccccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccch
Confidence 88777788999999999999999999999999988 8999999999999999999999999988887778899899999
Q ss_pred HHHHHHHhhhhhcCCCchHHHHhhchHhHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCCcccc-cccccccccchhhH
Q 014033 340 QIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQA-SSMALQHRLTTSAH 418 (432)
Q Consensus 340 ~~~~~~c~~L~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i~e~~~~~~~~d~W~~~~~~~~~~~~-~~~~~~~~lt~s~~ 418 (432)
+.+..+|..|..+|+-+..+|..++. ++++++.++++.+.....++.-++|....++.+.+.+ ++.+..++.|++++
T Consensus 320 ~~~~~~~~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~~a~~~~~~~~~~ 397 (673)
T KOG2215|consen 320 QLALTICKPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSRSTKRLLFKHSESLSAYRCRDTDEAS 397 (673)
T ss_pred hhhhhhhhhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcccchHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999999999999999 8999999999999999999999999998888777764 35567789999999
Q ss_pred HHHHHHHHhhc
Q 014033 419 RFNLMVQVKTM 429 (432)
Q Consensus 419 ~f~~~~q~~~~ 429 (432)
+|+.++|||..
T Consensus 398 r~~~~~~d~~~ 408 (673)
T KOG2215|consen 398 RFLQVVQDFSE 408 (673)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 2
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=252.05 Aligned_cols=307 Identities=16% Similarity=0.151 Sum_probs=234.2
Q ss_pred hcccCCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-------HHHHHHHH
Q 014033 27 LNLFKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISD-------LEGELSSI 98 (432)
Q Consensus 27 ~~~~~~~~Fd~e~Yv~~~l-~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~-------lE~Em~~L 98 (432)
...+++++||||.|+.++. ++++.+|.+.+.+|....+++++|||+.||+|||+||.++++|++ ||+||..|
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L 104 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGL 104 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhH
Confidence 3668999999999999999 999999999999999999999999999999999999999999997 56777777
Q ss_pred HHHHHHHHHHHHHhhhhhhcchhhhhcccccc-cccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHH
Q 014033 99 RNLLSTQATLIHGLAEGVHIDSLKGSESFASK-NDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHL 177 (432)
Q Consensus 99 ~~ll~~~~~~i~~L~~~~~~~~l~~~~e~~~~-~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~ 177 (432)
... +..|+++++++ ..+|.++++.+.+ ++.+ .....+++++|+|..|..|+..+.|-+|+...-.+...
T Consensus 105 ~~~----ms~i~~~s~~l-~g~L~ekre~I~kLg~~~-----~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~ 174 (636)
T KOG2346|consen 105 EEV----MSSIQSKSDGL-AGSLFEKRELIKKLGQRP-----PLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGK 174 (636)
T ss_pred HHH----HHHHhhhhccc-cchhHHhHHHHHHhcCCc-----cchhhhHHHhhhHHHHHHhccccccchhhccccccccc
Confidence 776 56677777776 4567787765432 1111 13478999999999999999999999999999999999
Q ss_pred HHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHhc
Q 014033 178 AAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA-HSLLLNAHYQRYQYSM 256 (432)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A-~~lfL~~rs~~l~~~l 256 (432)
++.|++.|+ ++....+.++++.+++++|...+++++...+...+|+.+|..||.+..- +..||.+-...|
T Consensus 175 L~qY~~~ps-----fq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~~~eqsL---- 245 (636)
T KOG2346|consen 175 LRQYDGRPS-----FQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLEKLEQSL---- 245 (636)
T ss_pred hhhcCCCCc-----HHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhccc----
Confidence 999998887 8889999999999999999999999888888999999999999999766 777777665553
Q ss_pred ccccccccccccchHHHhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhhcccccccCchHHH
Q 014033 257 QSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAA 336 (432)
Q Consensus 257 ~~l~~~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~~~~~S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~~~l~~~~ 336 (432)
+++.+..+-+.+||-.+..++.-| ..++.+.....+ ++++++.+.
T Consensus 246 ---------DvL~~~d~~~s~fv~~l~s~a~t~-------------------------~alv~~~~~~e~-~~~d~S~~v 290 (636)
T KOG2346|consen 246 ---------DVLQIKDEEASTFVEDLDSSADTE-------------------------SALVHPAKIHED-AVRDFSEAV 290 (636)
T ss_pred ---------hhheeecccccccccchhhhhhhh-------------------------hhhhhhhhhhhc-cccchHHHH
Confidence 334455555566666666655555 222223232333 335666666
Q ss_pred HHHHHHHHHH-hhhhhcCCCchHHHHhhchHhHHHHHHHHHHHHHHHHHHHH
Q 014033 337 ECVQIALGHC-SLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMA 387 (432)
Q Consensus 337 ecv~~~~~~c-~~L~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i~e~~~~~~ 387 (432)
.+.+..+.-. .-+--.|++|.+++.+++.....+-+..++.+|.+.++...
T Consensus 291 RAldr~fr~s~~r~~~~a~~l~~~~~el~~~v~~~e~~l~l~ri~~~f~~~L 342 (636)
T KOG2346|consen 291 RALDRIFRDSEERLFKLARALTAMLPELLLSVLLRECFLILNRIYQDFRQLL 342 (636)
T ss_pred HHHHHHcccccchHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555421 12223566666766666666666666666666666655443
No 3
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.94 E-value=6.8e-25 Score=220.14 Aligned_cols=316 Identities=18% Similarity=0.194 Sum_probs=257.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhc
Q 014033 46 SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSE 125 (432)
Q Consensus 46 ~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~~~l~~~~ 125 (432)
+.+.++|.+.+..|...+..+..+++...++||..||.+++....+..++..+.+.+......++.|.+.+. .+..+.
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~--~f~~~~ 83 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQ--RFSSKA 83 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 788899999999999999999999999999999999999999999999999999999888888888877641 222221
Q ss_pred cccccccccc---ccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Q 014033 126 SFASKNDLLN---LENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDR 202 (432)
Q Consensus 126 e~~~~~~l~~---~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r 202 (432)
..+..++-.+ .+ -.+.+..+.|+|..+|.||.+++|++|+++..+++++...+++.+. ++.+..++...
T Consensus 84 ~~~~~~r~~~~~~l~---~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~l-----v~~i~~ev~~~ 155 (338)
T PF04124_consen 84 QKISEERKKASLLLE---NHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPL-----VKSIAQEVEAA 155 (338)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchh-----HHHHHHHHHHH
Confidence 1111111000 00 0134678999999999999999999999999999999998887553 88899999998
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchHH--HHHHHHHHHHHHHHhcccccccccccccchHHHhHHHHHH
Q 014033 203 RQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA--HSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFS 280 (432)
Q Consensus 203 ~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A--~~lfL~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs 280 (432)
...+...|...|+.| +..+.+.+.+++|.|++..+.. +..||++|..+++..+..+...+ +..|+..+..+|-.
T Consensus 156 ~~~ml~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~---~~~~lkr~iei~R~ 231 (338)
T PF04124_consen 156 LQQMLSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSD---PYRYLKRYIEIYRE 231 (338)
T ss_pred HHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhh---HHHHHHHHHHHHHH
Confidence 899999999999987 8889999999999999986554 89999999999999988887544 36999999999999
Q ss_pred HHHHHHHHHHHhcCCC-Cc----------chhhhHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHhhh
Q 014033 281 AIAQAACDSLAIFGKE-TA----------YTSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLL 349 (432)
Q Consensus 281 ~I~~t~~~~~~~F~~~-~~----------~~S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c~~L 349 (432)
.+..++..|+++|+++ +. ..+.+..|+.+.+..|...+++++.... ++.+ ...+..+.-.|.+|
T Consensus 232 ~~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~~--~~~~---~sll~q~~y~~~S~ 306 (338)
T PF04124_consen 232 HLFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRVD--ESSR---ESLLTQLMYFASSF 306 (338)
T ss_pred HHHHHHHHHHHHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhccc--cchH---HHHHHHHHHHHHhc
Confidence 9999999999999943 21 2357778999999999999999984432 1122 22333444456899
Q ss_pred hhcCCCchHHHHhhchHhHHHHHHHHHHHHH
Q 014033 350 EARGLALCPVLIKLFRPSVEQALDANLKRIE 380 (432)
Q Consensus 350 ~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i~ 380 (432)
..+|+||++++.++|...+.+.+..++....
T Consensus 307 ~r~g~DF~~ll~~~~~~~~~~~f~~~~~~a~ 337 (338)
T PF04124_consen 307 GRVGADFRPLLAPLFERAVLNLFETSVSTAI 337 (338)
T ss_pred CccCCChHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999988877653
No 4
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.5e-20 Score=188.48 Aligned_cols=340 Identities=16% Similarity=0.193 Sum_probs=260.4
Q ss_pred CCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 31 KSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110 (432)
Q Consensus 31 ~~~~Fd~e~Yv~~~l~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~ 110 (432)
.+++||+ ||.++..++.+++++.+..|...+...+..++...+.||..||++++-+...=.+....++.+.+.--...
T Consensus 17 ~~~~~~~--~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~ 94 (581)
T KOG2069|consen 17 NSPEMDA--YVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLP 94 (581)
T ss_pred cCchhHH--HHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhH
Confidence 6677775 99998888999999999999999999999999999999999999988777655555555555444333333
Q ss_pred Hhhhhhh-----cchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccC
Q 014033 111 GLAEGVH-----IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTK 185 (432)
Q Consensus 111 ~L~~~~~-----~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~ 185 (432)
.|...+. ...+.+...- +++. .+ -...+.-+.++|+.||.||..++|++|.++...+-+.-...+..+
T Consensus 95 ~L~s~~~~f~~~~~~i~e~~~~---~~~~-l~---~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~p 167 (581)
T KOG2069|consen 95 ELTSPCKRFQDFAEEISEHRRL---NSLT-LD---KHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIP 167 (581)
T ss_pred HhhhHHHHHHHHHHHhhHhHHH---HHHH-Hh---hcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccch
Confidence 3433331 0111111100 0111 00 123456799999999999999999999999988887776665543
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchHH--HHHHHHHHHHHHHHhcccccccc
Q 014033 186 TLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA--HSLLLNAHYQRYQYSMQSLRPSS 263 (432)
Q Consensus 186 ~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A--~~lfL~~rs~~l~~~l~~l~~~g 263 (432)
+++.+...+.+.+..+.++|.+.++.| +..+++.+.+.+|.+.+....+ +-.||++|..|+.+.+..+....
T Consensus 168 -----vi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~~~ 241 (581)
T KOG2069|consen 168 -----VIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDISTNN 241 (581)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 388899999999999999999999864 5678999999999999877665 89999999999999888887433
Q ss_pred cccccchHHHhHHHHHHHHHHHHHHHHHhcCCCC------------cchhhhHHHHHHHHHHHHHHHHHHhhcccccccC
Q 014033 264 TSYGGAYTAALSQLVFSAIAQAACDSLAIFGKET------------AYTSELVMWATRQTEAFAHLVKRHALASSAAAGG 331 (432)
Q Consensus 264 ~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~~------------~~~S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~~~ 331 (432)
+..|+.....++-..+..+.-.|+++|+++. .-.+.|..|+..++..|+.++.+-+.-.. ++
T Consensus 242 ---~~~~l~~~i~~~r~~lf~~i~qY~aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~---~~ 315 (581)
T KOG2069|consen 242 ---PYLYLKKTIEIIRVNLFDIITQYLAVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI---ES 315 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh---ch
Confidence 3478888887777777777777999999762 13468899999999999999998774443 23
Q ss_pred ch-HHHHHHHHHHHHHhhhhhcCCCchHHHHhhchHhHHHHHHHHHHHHHHHHHHHHhcCCceec
Q 014033 332 LR-AAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLT 395 (432)
Q Consensus 332 l~-~~~ecv~~~~~~c~~L~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i~e~~~~~~~~d~W~~~ 395 (432)
++ ++..|+-.+ .++..+|+||+.++.++|...+.+.+..|.....+.+.....+-.|...
T Consensus 316 l~~vl~~cmyf~----~SF~rvg~Dfr~~lap~f~~~vl~~F~knvqe~vEkfq~el~~y~~i~~ 376 (581)
T KOG2069|consen 316 LEHVLGQLMYFA----LSFGRVGLDFRGLLAPLLECVVLQRFMKNVEEATEKFELELESYYLIQS 376 (581)
T ss_pred HHHHHHHHHHHH----HhhccccchhcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Confidence 33 222343222 5678899999999999999999999999999999999998877778775
No 5
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.75 E-value=1.2e-17 Score=134.82 Aligned_cols=85 Identities=46% Similarity=0.620 Sum_probs=82.0
Q ss_pred cCCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 014033 30 FKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATL 108 (432)
Q Consensus 30 ~~~~~Fd~e~Yv~~~l-~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~ 108 (432)
|++++|||+.|+++++ ..+.++|++++.+|...++..+++||++||+||..||.||+||+.|+++|.+|+++|+++...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhh
Q 014033 109 IHGLAE 114 (432)
Q Consensus 109 i~~L~~ 114 (432)
++.+++
T Consensus 81 ~~~l~~ 86 (87)
T PF08700_consen 81 IQSLQE 86 (87)
T ss_pred HHHhhc
Confidence 888754
No 6
>PF15469 Sec5: Exocyst complex component Sec5
Probab=99.32 E-value=3.4e-11 Score=110.65 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=127.1
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHhhhhhh--cchhhhhcccccccccccccCC
Q 014033 68 EEMRKSVYANYAAFIRTSKEISDLEGELSSIRNL------LSTQATLIHGLAEGVH--IDSLKGSESFASKNDLLNLENK 139 (432)
Q Consensus 68 ~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~l------l~~~~~~i~~L~~~~~--~~~l~~~~e~~~~~~l~~~~~~ 139 (432)
++||..|++||.+||.+.++|..|-.+|..-... +......+........ +..+.+..+.... +.. ..
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~--l~~-~l- 77 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADK--LRN-AL- 77 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH--HHH-HH-
Confidence 6899999999999999999999999999655432 3333333333222210 2222222211100 000 00
Q ss_pred CCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 014033 140 EPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPST 219 (432)
Q Consensus 140 ~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~ 219 (432)
...+..++++++|..|..||..++|+.||..|.+++.++.++.. ...++..+..+|+.+...+...|...|.+|..
T Consensus 78 ~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~----~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~ 153 (182)
T PF15469_consen 78 EFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQ----QVPVFQKVWSEVEKIIEEFREKLWEKLLSPPS 153 (182)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 01256789999999999999999999999999999999988752 11248889999999999999999999999988
Q ss_pred ChHHHHHHHHHHHhcCCchHHHHHHHHH
Q 014033 220 RGAELRAAISALKKLGDGPRAHSLLLNA 247 (432)
Q Consensus 220 ~~~el~~~v~lL~rLg~~~~A~~lfL~~ 247 (432)
+..+..+.|..|..||..+...-.||.+
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~l~~ 181 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYWLES 181 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHc
Confidence 8999999999999999887777666654
No 7
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.3e-10 Score=121.41 Aligned_cols=234 Identities=17% Similarity=0.166 Sum_probs=180.8
Q ss_pred chhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC-
Q 014033 143 DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPS-TR- 220 (432)
Q Consensus 143 ~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~-~~- 220 (432)
....|..+.++.++.++++++|..+..++-.-.+.. . - .....+...+..+.-.|.+.|...+..+. ..
T Consensus 282 ~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~-------~-~-~~~~~~~~~Lq~~~lfl~~~ll~~~~~~~~le~ 352 (673)
T KOG2215|consen 282 EEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASA-------C-L-QLALTICKPLQMRELFLLNLLLKIFSVERALER 352 (673)
T ss_pred hhhchhhhhhHHHHHHHHhccchhhHHHHHhhhccc-------c-h-hhhhhhhhhhhHhHhhhhhHHHHHhhhhhhhhh
Confidence 457899999999999999999999988864322111 1 0 01234555667777777777777776331 11
Q ss_pred -hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccccccchHHHhHHHHHHHHHHHHHHHHHhcCCCCcc
Q 014033 221 -GAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAY 299 (432)
Q Consensus 221 -~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~~~~ 299 (432)
....++....|+.+|++.+|-..||..|+..+ ...+....+... ....+++.+.+.+.++.. |...+.|
T Consensus 353 ~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~-~a~~~~~~~~~~--------r~~~~~~d~~~~l~~~~~-~e~~s~~ 422 (673)
T KOG2215|consen 353 DFRVAQRRHHQLVELGRWSRSTKRLLFKHSESL-SAYRCRDTDEAS--------RFLQVVQDFSEDLCDILK-FEQGSKC 422 (673)
T ss_pred hHHHHhhhHHHHHHhhhhcccchHHHHHHHHHH-HHHHhhhhhhhH--------HHHHHHHHHHHHHHHHhh-hccchHH
Confidence 23556667888999999999999999999888 554443322221 134466677777777777 8887888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHhhhhhcCCCchHHHHhhchHhHHHH--HHHHHH
Q 014033 300 TSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQA--LDANLK 377 (432)
Q Consensus 300 ~S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c~~L~~~GLdl~~~L~~ll~~~ve~~--l~~~~~ 377 (432)
.....+|+..+++.|...+.+|..... .+.+++++|++.+..+|.+|...|+|+.+....++|..++.. +..+.+
T Consensus 423 ~~~~~q~~~~~ldtl~~~l~~s~~e~~---~~~s~~a~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s~~l~~~~E 499 (673)
T KOG2215|consen 423 LYTSFQVLNKELDTLGRQLPRSYEEQG---PARSMVAEIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESSQLLEGFKE 499 (673)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhcC---chHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHhhhhhcchh
Confidence 888889999888888888888885543 347899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHh-cCCceecCCC
Q 014033 378 RIEESTAAMAA-ADDWVLTYPP 398 (432)
Q Consensus 378 ~i~e~~~~~~~-~d~W~~~~~~ 398 (432)
-|++.+..+.+ ++.|+++...
T Consensus 500 ~~~~ald~r~~~ee~W~~~~L~ 521 (673)
T KOG2215|consen 500 GIADALDNRNREEESWVRYLLQ 521 (673)
T ss_pred hHHHHHHhhhhHHHHHHHHHHh
Confidence 99999999999 9999997554
No 8
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.90 E-value=9.5e-06 Score=82.98 Aligned_cols=339 Identities=15% Similarity=0.185 Sum_probs=212.8
Q ss_pred CCCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHhHHHHHHHHHHHHHHHH
Q 014033 33 DKFDADVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANY-------AAFIRTSKEISDLEGELSSIRNLLS 103 (432)
Q Consensus 33 ~~Fd~e~Yv~~~l--~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY-------~~FI~aSkEIs~lE~Em~~L~~ll~ 103 (432)
|+|||-.|+..++ ..++.+|..+-..+...+..++.++.+.|-+.= ..+-.|-..|..|-..+.+++..=.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999 888899999999999999999999998886532 1234455556666666666666655
Q ss_pred HHHHHHHHhhhhhhcchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhc
Q 014033 104 TQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQ 183 (432)
Q Consensus 104 ~~~~~i~~L~~~~~~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~ 183 (432)
.-...|..+...+ ..|--.....+. .. . ..+.++=+...-+.|..++..|+|.++..++.-...++.....
T Consensus 82 ~sE~~V~~it~dI--k~LD~AKrNLT~--SI--T---~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~ 152 (383)
T PF04100_consen 82 ESEQMVQEITRDI--KQLDNAKRNLTQ--SI--T---TLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKP 152 (383)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHH--HH--H---HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHc
Confidence 5556666665553 122111100000 00 0 1256778889999999999999999999999999988865543
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 014033 184 TKTLDPAMLISLENTIIDRRQKLADQLAEAACQP---------STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQY 254 (432)
Q Consensus 184 ~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~---------~~~~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~ 254 (432)
-.+++ .+..+..++......|.+++..++..- ......+..+...+--||..-+ ..++...-...-.
T Consensus 153 yksi~--~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r--~~li~wf~~~qL~ 228 (383)
T PF04100_consen 153 YKSIP--QIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVR--EELIDWFCNKQLK 228 (383)
T ss_pred ccCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHH--HHHHHHHHHHHHH
Confidence 33221 278888999999999999998875531 1123578888888888897643 3333332222222
Q ss_pred hccccc-ccccccccchHHHhHHH--HHH-HHHHHHHHHHHhcCCCCcch-hhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 014033 255 SMQSLR-PSSTSYGGAYTAALSQL--VFS-AIAQAACDSLAIFGKETAYT-SELVMWATRQTEAFAHLVKRHALASSAAA 329 (432)
Q Consensus 255 ~l~~l~-~~g~~~~~~Yi~~ls~~--~Fs-~I~~t~~~~~~~F~~~~~~~-S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~ 329 (432)
..+.+= ..+. ..-+.++.+. +|. .|..-=..|..+||..=.+. ...+.+|.--=+.+..++.+.- ..
T Consensus 229 eY~~iF~~~~e---~~~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~--~~--- 300 (383)
T PF04100_consen 229 EYRRIFRENDE---AASLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRK--SE--- 300 (383)
T ss_pred HHHHHHccccc---ccchhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcC--CC---
Confidence 222221 2222 2445555544 333 23332333456777541111 1122233222233334443311 11
Q ss_pred cCchHHHHHHHHHHHHHhhhhh-c-C------------------CCchHHHHhhchHhHHHHHHHHHHHHHHHHHHHHhc
Q 014033 330 GGLRAAAECVQIALGHCSLLEA-R-G------------------LALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAA 389 (432)
Q Consensus 330 ~~l~~~~ecv~~~~~~c~~L~~-~-G------------------Ldl~~~L~~ll~~~ve~~l~~~~~~i~e~~~~~~~~ 389 (432)
.+......|++.++..=..|.. . | -.|...+...|.|++--=++.--+.+.+-+...+.+
T Consensus 301 ~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~ 380 (383)
T PF04100_consen 301 LDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISE 380 (383)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 2445667888888776444432 2 1 257788999999999877888788889999999999
Q ss_pred CCc
Q 014033 390 DDW 392 (432)
Q Consensus 390 d~W 392 (432)
++|
T Consensus 381 ~~w 383 (383)
T PF04100_consen 381 EKW 383 (383)
T ss_pred cCC
Confidence 999
No 9
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.84 E-value=5.7e-07 Score=88.79 Aligned_cols=217 Identities=18% Similarity=0.186 Sum_probs=158.8
Q ss_pred cCCCCCCHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 014033 30 FKSDKFDADVYVKSKC--S-LNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQA 106 (432)
Q Consensus 30 ~~~~~Fd~e~Yv~~~l--~-~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~ 106 (432)
|=+++|||..|.=+.+ . .+.+++.+...+|....+.....|-+.|-+||..|..+-+.|..++.++..--..+...+
T Consensus 8 yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R 87 (291)
T PF10475_consen 8 YFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLR 87 (291)
T ss_pred hcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455999999986666 4 678899999999999999999999999999999999999999999999988877777777
Q ss_pred HHHHHhhhhhh-----cchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 014033 107 TLIHGLAEGVH-----IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEA 181 (432)
Q Consensus 107 ~~i~~L~~~~~-----~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~ 181 (432)
..+....+.+. +-.+..+++... .+. +..+.++-+.+.-..++.++++++|..|++++...++.+..+
T Consensus 88 ~~L~~~~~~~~~~~L~Il~~~rkr~~l~--~ll-----~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l 160 (291)
T PF10475_consen 88 RNLKSADENLTKSGLEILRLQRKRQNLK--KLL-----EKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEEL 160 (291)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHH-----HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 77766655431 111222221110 011 023567788888899999999999999999999999999887
Q ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccc
Q 014033 182 KQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQS 258 (432)
Q Consensus 182 ~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~--~~~~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~ 258 (432)
.+..+ +..+..++.+....+.++|-..|..- ...+..-.+....-.-||+...+.+.+..+....|......
T Consensus 161 ~~~~c-----~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~ 234 (291)
T PF10475_consen 161 KGYSC-----VRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFS 234 (291)
T ss_pred ccchH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 67788888888777777777777642 23455555666666667877777766655555444444333
No 10
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.64 E-value=5.4e-05 Score=84.08 Aligned_cols=305 Identities=15% Similarity=0.175 Sum_probs=184.9
Q ss_pred hhcccCCCCCCHHHHHHHhc-CCCH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 014033 26 GLNLFKSDKFDADVYVKSKC-SLNE----KE----IRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELS 96 (432)
Q Consensus 26 ~~~~~~~~~Fd~e~Yv~~~l-~~~~----~~----l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~ 96 (432)
|+..|.+++|||.+||+.-+ ..+. .. +-.+..+|+-..+++...+.+..-+==..==++.+||..|..|..
T Consensus 1 d~s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~ 80 (766)
T PF10191_consen 1 DLSAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAA 80 (766)
T ss_pred ChhhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35789999999999999999 3222 22 444444554444444443333322211222268889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhh--------hcchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHH
Q 014033 97 SIRNLLSTQATLIHGLAEGV--------HIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEAL 168 (432)
Q Consensus 97 ~L~~ll~~~~~~i~~L~~~~--------~~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv 168 (432)
.|++.|.....-+....... .++....+.+.+.. . ..+...|- .+-.++|..++.++++.+.
T Consensus 81 ~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~--~-------L~EA~~w~-~l~~~v~~~~~~~d~~~~a 150 (766)
T PF10191_consen 81 SLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARE--T-------LQEADNWS-TLSAEVDDLFESGDIAKIA 150 (766)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH--H-------HHHHHhHH-HHHHHHHHHHhcCCHHHHH
Confidence 99988777666555432221 12222222221100 0 11334455 4888999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCCChHHHHHHHHHHHhcCCchHHHHHH
Q 014033 169 TALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLA----DQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLL 244 (432)
Q Consensus 169 ~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~----~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A~~lf 244 (432)
+-+...++.+.-.++.|.- ..=+..++.-+++|. -+|...+.+ -....++..+..+.++|+.++....|
T Consensus 151 ~~l~~m~~sL~~l~~~pd~-----~~r~~~le~l~nrLEa~vsp~Lv~al~~--~~~~~~~~~~~if~~i~R~~~l~~~Y 223 (766)
T PF10191_consen 151 DRLAEMQRSLAVLQDVPDY-----EERRQQLEALKNRLEALVSPQLVQALNS--RDVDAAKEYVKIFSSIGREPQLEQYY 223 (766)
T ss_pred HHHHHHHHHHHHHcCCCch-----hHHHHHHHHHHHHHHHHhhHHHHHHHHh--cCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999888777652 222222222223333 344444443 34579999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccc-ccccchHHHhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHHHHHHHHHHHHHhh
Q 014033 245 LNAHYQRYQYSMQSLRPSST-SYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQTEAFAHLVKRHAL 323 (432)
Q Consensus 245 L~~rs~~l~~~l~~l~~~g~-~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~~~~~S~lv~Wa~~ei~~f~~l~~r~v~ 323 (432)
-++|...++..=......+. .....++..+-..+.+.+..=..|...+|+++.. .+..-..+-+...-..|..++-
T Consensus 224 ~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~---~~~~ll~~~L~~L~PS~~~~l~ 300 (766)
T PF10191_consen 224 CKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP---VLPKLLAETLSALQPSFPSRLS 300 (766)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhcCccHHHHHH
Confidence 99999999888665543331 1224566666667777888888899999998622 2333333333332222222221
Q ss_pred ---cccccccCchHHHHHHHHHHHHHhhhh
Q 014033 324 ---ASSAAAGGLRAAAECVQIALGHCSLLE 350 (432)
Q Consensus 324 ---~~~~~~~~l~~~~ecv~~~~~~c~~L~ 350 (432)
........+....++-+++...+..|+
T Consensus 301 ~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~ 330 (766)
T PF10191_consen 301 SALKRAGPETKLETLIELYQATEHFARNLE 330 (766)
T ss_pred HHHhhcCchhhHHHHHHHHHHHHHHHHHHH
Confidence 111000136667777777776664444
No 11
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.64 E-value=4.4e-05 Score=80.49 Aligned_cols=266 Identities=14% Similarity=0.175 Sum_probs=172.0
Q ss_pred HHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcch
Q 014033 42 KSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDS 120 (432)
Q Consensus 42 ~~~l-~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~~~ 120 (432)
..++ ..+..+|+..++.++...+.-.++|++.|=+-|..-|+++++|.+|.+--..|...+.....-..+|..++
T Consensus 11 d~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~s---- 86 (863)
T KOG2033|consen 11 DTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANS---- 86 (863)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----
Confidence 4566 78899999999999999999999999999999999999999999998877777666555444444443221
Q ss_pred hhhhcccccccccccccCCCC--------CchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHH-
Q 014033 121 LKGSESFASKNDLLNLENKEP--------SDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAM- 191 (432)
Q Consensus 121 l~~~~e~~~~~~l~~~~~~~~--------~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~- 191 (432)
-..+|++- +..| .-..+.|.+.|+.+=.|+.+.+|=+|+.+|..++.+-++.-...+.++..
T Consensus 87 -----vA~tp~ra----eqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~ 157 (863)
T KOG2033|consen 87 -----VAKTPGRA----EQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLK 157 (863)
T ss_pred -----ccCCcchh----hcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHh
Confidence 11112210 0001 12467999999999999999999999999999988776443222222110
Q ss_pred -HHHHHHHHHHH---HHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHhcccccccccc
Q 014033 192 -LISLENTIIDR---RQKLADQLAEAACQPSTRGAELRAAISALKKLGD--GPRAHSLLLNAHYQRYQYSMQSLRPSSTS 265 (432)
Q Consensus 192 -~~~l~~~l~~r---~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~--~~~A~~lfL~~rs~~l~~~l~~l~~~g~~ 265 (432)
+..+..+...- +..+..+-...|-.+.+.-.....++..+.-|.+ ++++.++||..|..+|.+.+.. .++..
T Consensus 158 nfP~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~-~p~~~- 235 (863)
T KOG2033|consen 158 NFPALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND-GPSEP- 235 (863)
T ss_pred hcHHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc-CCCcc-
Confidence 11122222211 1333444444455555555555555555444554 4678999999999999999987 33332
Q ss_pred cccchHHHhHHHHHHHHHHHHHHHHHhcCCC-------------------CcchhhhHHHHHHHHHHHHHHHHHHhhcc
Q 014033 266 YGGAYTAALSQLVFSAIAQAACDSLAIFGKE-------------------TAYTSELVMWATRQTEAFAHLVKRHALAS 325 (432)
Q Consensus 266 ~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~-------------------~~~~S~lv~Wa~~ei~~f~~l~~r~v~~~ 325 (432)
..-...++. ..+.|+.|+..--++|-.. +.+-+.+-.|.....+.-+..+-|+..++
T Consensus 236 --~~vka~il~-~v~vl~~Tl~qv~elfl~~~Llfstle~c~gq~~~~~i~emE~~l~~sf~~lpesim~f~pr~lv~k 311 (863)
T KOG2033|consen 236 --RRVKATILN-IVDVLKKTLAQVEELFLHGELLFSTLEVCNGQYKCELIREMEADLAYSFEKLPESIMDFVPRHLVEK 311 (863)
T ss_pred --chhHHHHHH-HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccCCCCchHHHHHHHHHHHhhHHHHhhccchhcccc
Confidence 233333332 2344444555444444321 23447778899988888888888877554
No 12
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.60 E-value=0.00037 Score=75.54 Aligned_cols=377 Identities=16% Similarity=0.128 Sum_probs=222.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcchhhhhc
Q 014033 47 LNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHG-LAEGVHIDSLKGSE 125 (432)
Q Consensus 47 ~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~-L~~~~~~~~l~~~~ 125 (432)
.+.+++...-.+|....+++..+.+..+-+||..|+.-.....++-.+...|..-+. .+++. ..+.+ ...+....
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~---d~l~~~~~~~i-~~~l~~a~ 82 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREIN---DLLQSEIENEI-QPQLRDAA 82 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhccchh-HHHHHHHH
Confidence 345788888899999999999999999999999999877666665444333333321 11111 11111 01111110
Q ss_pred c---cccccccc-cccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q 014033 126 S---FASKNDLL-NLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (432)
Q Consensus 126 e---~~~~~~l~-~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 201 (432)
+ ....+ +. +..-....+.++.+.+..+.++..+.+++|..|.+.+++++..+...+..+.....++..|+.+...
T Consensus 83 ~e~~~L~~e-L~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~ 161 (593)
T PF06248_consen 83 EELQELKRE-LEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSE 161 (593)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHH
Confidence 0 00000 00 0000002356778888999999999999999999999999999987644333345578999999999
Q ss_pred HHHHHHHHHHHHhcC------C-C-----------------CChH--HHHHHHHHHHhcCCchHHHHHHHHHHH-HHHHH
Q 014033 202 RRQKLADQLAEAACQ------P-S-----------------TRGA--ELRAAISALKKLGDGPRAHSLLLNAHY-QRYQY 254 (432)
Q Consensus 202 r~~~L~~~L~~~l~~------~-~-----------------~~~~--el~~~v~lL~rLg~~~~A~~lfL~~rs-~~l~~ 254 (432)
.+..|...|...... + . .... .+...+..|-.||..+..-..|-+.-- ..|+-
T Consensus 162 lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~P 241 (593)
T PF06248_consen 162 LRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKP 241 (593)
T ss_pred HHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 999999999876652 1 1 0111 388999999999988654433332211 22233
Q ss_pred hccccc----cc--cc-c--cccchHHHh-------HHHHHHHHHHHHHHHHHhcCCCCcch-hhhHHHHHHHHHHHHHH
Q 014033 255 SMQSLR----PS--ST-S--YGGAYTAAL-------SQLVFSAIAQAACDSLAIFGKETAYT-SELVMWATRQTEAFAHL 317 (432)
Q Consensus 255 ~l~~l~----~~--g~-~--~~~~Yi~~l-------s~~~Fs~I~~t~~~~~~~F~~~~~~~-S~lv~Wa~~ei~~f~~l 317 (432)
.+..-. .. +. . ..+.|.... -.-+|+.|..+..-....+...+.-. +-+..+...-.......
T Consensus 242 lI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~ 321 (593)
T PF06248_consen 242 LISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSEL 321 (593)
T ss_pred HhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHH
Confidence 222100 00 00 0 012232221 13467777776665555553322111 35566777777778777
Q ss_pred HHHHhhccc--ccccCchHHHHHHHHHHHHHhhhhhcCCCc--hHHHHhhchHhHHHH-HHHHHHHHHHHHHHHHhcCCc
Q 014033 318 VKRHALASS--AAAGGLRAAAECVQIALGHCSLLEARGLAL--CPVLIKLFRPSVEQA-LDANLKRIEESTAAMAAADDW 392 (432)
Q Consensus 318 ~~r~v~~~~--~~~~~l~~~~ecv~~~~~~c~~L~~~GLdl--~~~L~~ll~~~ve~~-l~~~~~~i~e~~~~~~~~d~W 392 (432)
+-.+.+.+. .....+..+..-++.+...+..|.+.|+=- ...|.... .++... ...-...+.+..+..+..|.+
T Consensus 322 lI~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~-~~i~~~f~~kr~~~iL~~AR~lm~~~~~ 400 (593)
T PF06248_consen 322 LISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDNTELSEFV-DNIETHFANKRCQDILDKARDLMLRDLH 400 (593)
T ss_pred HHHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCchHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777765543 112345666777888889999999999822 12332322 222332 334444567777777777777
Q ss_pred eecC--CC------C----Ccc------------c-c------cccccccccchhhHHHHHHHHHhhc
Q 014033 393 VLTY--PP------M----GTR------------Q-A------SSMALQHRLTTSAHRFNLMVQVKTM 429 (432)
Q Consensus 393 ~~~~--~~------~----~~~------------~-~------~~~~~~~~lt~s~~~f~~~~q~~~~ 429 (432)
..+- +. . +.+ . . .-.-+.|+.|.|++.|+.++.+.|.
T Consensus 401 ~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ 468 (593)
T PF06248_consen 401 DTVKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLK 468 (593)
T ss_pred cceEecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHH
Confidence 6651 11 0 000 0 0 0112778999999999999988774
No 13
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.0078 Score=65.66 Aligned_cols=348 Identities=13% Similarity=0.173 Sum_probs=202.2
Q ss_pred cCCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH-----HH
Q 014033 30 FKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNL-----LS 103 (432)
Q Consensus 30 ~~~~~Fd~e~Yv~~~l-~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~l-----l~ 103 (432)
|.+++|+|.=|+.+.= ..+-++++.--..|......-.+.=+..|-.|+..||..=+++..++..+.+-.+- +.
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 7999999999988866 56666665554444444433444455668899999999999999998888771110 00
Q ss_pred HHHHHHHHhhhhhh--cchhhhhcccccccccccccCCC----CCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHH
Q 014033 104 TQATLIHGLAEGVH--IDSLKGSESFASKNDLLNLENKE----PSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHL 177 (432)
Q Consensus 104 ~~~~~i~~L~~~~~--~~~l~~~~e~~~~~~l~~~~~~~----~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~ 177 (432)
-.-+.|.++....+ ...+.++.+.. +.+. .....++|+.+|..++.-+.-|+|+-+|.-|++++..
T Consensus 246 ~l~n~i~~~~s~ad~iF~~vl~Rk~~A--------DstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl 317 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLIFEDVLERKDKA--------DSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSL 317 (934)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccccc--------ccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHh
Confidence 01222222222110 11122111110 1100 0135679999999999999999999999999999988
Q ss_pred HHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchHH-----------HHHHHH
Q 014033 178 AAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRA-----------HSLLLN 246 (432)
Q Consensus 178 l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A-----------~~lfL~ 246 (432)
..+. +.+ .++.+-+.++.+...+...|.+.+-.+...-.+..+.|.+|.-|.-...- ..-++.
T Consensus 318 ~~~t-~v~-----~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~wq~I~~q~k~i~~L~~ 391 (934)
T KOG2347|consen 318 FGKT-EVN-----LFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPVWQCIGVQNKRILGLLE 391 (934)
T ss_pred hccc-ccH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCchhhhccccchHHHhhhh
Confidence 7542 112 37888888999999999999999998888888888888888855422111 011111
Q ss_pred HHHHHHHHhccccc---------cc--------------------------ccccccchHHHhHHHHHHHHHHHHHHHHH
Q 014033 247 AHYQRYQYSMQSLR---------PS--------------------------STSYGGAYTAALSQLVFSAIAQAACDSLA 291 (432)
Q Consensus 247 ~rs~~l~~~l~~l~---------~~--------------------------g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~ 291 (432)
.+.......+..++ .. .++...+||..|+.+..+.+-.-=+--..
T Consensus 392 s~~~~~~~~l~~~~~~~~~~q~s~~g~~~S~t~s~~~~~~~q~~~~~~~~~k~~~r~~fiekL~~l~~s~lP~fWKl~~s 471 (934)
T KOG2347|consen 392 SCWDDHVARLEGLRLSDKWTQPSQNGVHLSDTASSMENSQNQVINEWKIREKTPERVNFIEKLTDLLLSQLPIFWKLAIS 471 (934)
T ss_pred hcchhHHHHhhcccccccccchhhcccccCchHHHHhhhhhhhccchhhhhhchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 11111111111111 00 12234689999998877665432222223
Q ss_pred -----hcCCCCcch-hhh-----HHHHHHHHHHHHHHHHHHhhc---c----cc---------cc-cCchHHHHHHHHHH
Q 014033 292 -----IFGKETAYT-SEL-----VMWATRQTEAFAHLVKRHALA---S----SA---------AA-GGLRAAAECVQIAL 343 (432)
Q Consensus 292 -----~F~~~~~~~-S~l-----v~Wa~~ei~~f~~l~~r~v~~---~----~~---------~~-~~l~~~~ecv~~~~ 343 (432)
.|...+-+. +.+ ...++.--+.|..++..-... . .. .. ..+.-++.|++.++
T Consensus 472 y~~G~~~~~~sq~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr 551 (934)
T KOG2347|consen 472 YFNGDLFSPSSQVQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRSLLPWMPLAIKTVR 551 (934)
T ss_pred HhcccccCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccccCccchhHHHHhH
Confidence 343221010 111 111222223333333332211 0 00 00 11234578999999
Q ss_pred HHHhhhhhcCCCchHHHHhhchHhHHHHHH-------HHHHHHHHHHHHHHhcCCceec
Q 014033 344 GHCSLLEARGLALCPVLIKLFRPSVEQALD-------ANLKRIEESTAAMAAADDWVLT 395 (432)
Q Consensus 344 ~~c~~L~~~GLdl~~~L~~ll~~~ve~~l~-------~~~~~i~e~~~~~~~~d~W~~~ 395 (432)
.-|..|..-- ++....++|-.+-..+ ..+++-.|.++.++..+.|.+.
T Consensus 552 ~~~~sL~ale----~~P~~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~ 606 (934)
T KOG2347|consen 552 KACQSLEALE----SLPHDALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPD 606 (934)
T ss_pred HHHHHHHHhh----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999888643 2222444554443333 4555668889999999999997
No 14
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.75 E-value=1.6e-05 Score=69.35 Aligned_cols=86 Identities=17% Similarity=0.322 Sum_probs=13.2
Q ss_pred cccCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014033 28 NLFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQAT 107 (432)
Q Consensus 28 ~~~~~~~Fd~e~Yv~~~l~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~ 107 (432)
..|..|+|||+.||.+. .....|..++.+|....+.+.++|-..|=+||..||.-|..+..++..+..++.-|...+.
T Consensus 6 ~~F~~~~Fd~d~Fl~~~--~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~ 83 (133)
T PF06148_consen 6 EEFTKPDFDVDEFLSSN--RRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFRE 83 (133)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 56899999999999993 3344566677888888889999999999999999999999999999999999988888777
Q ss_pred HHHHhhhh
Q 014033 108 LIHGLAEG 115 (432)
Q Consensus 108 ~i~~L~~~ 115 (432)
.|.+..+.
T Consensus 84 ~v~~~~~~ 91 (133)
T PF06148_consen 84 EVESVRDE 91 (133)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 77765553
No 15
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.091 Score=56.53 Aligned_cols=348 Identities=14% Similarity=0.149 Sum_probs=201.6
Q ss_pred hhhcccCCCCCCHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014033 25 EGLNLFKSDKFDADVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLL 102 (432)
Q Consensus 25 ~~~~~~~~~~Fd~e~Yv~~~l--~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll 102 (432)
+-.+.|.+|+|+.=.|+..++ ..+..+|..+-.++....+..+.+++.+|-.+=|.=-+.-+-..+.+.-|.+|.+.+
T Consensus 9 ~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i 88 (793)
T KOG2180|consen 9 DINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKI 88 (793)
T ss_pred HHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 445778889999999999999 789999999999999999999999999998776665555455555555666666655
Q ss_pred HHHHHH-------HHHhhhhhhcchhhhhcccccccccccccCCC-CCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHH
Q 014033 103 STQATL-------IHGLAEGVHIDSLKGSESFASKNDLLNLENKE-PSDLEKWSVEFPDLLDVLLAERRIDEALTALDEG 174 (432)
Q Consensus 103 ~~~~~~-------i~~L~~~~~~~~l~~~~e~~~~~~l~~~~~~~-~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~ 174 (432)
.+.+.. |..+...+ ..|- +++-.+ ...- ..+.+.-|..--+.|.+++..|.|-+|+..+...
T Consensus 89 ~eiks~ae~Te~~V~eiTrdI--KqLD-----~AKkNL---TtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai 158 (793)
T KOG2180|consen 89 QEIKSVAESTEAMVQEITRDI--KQLD-----FAKKNL---TTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAI 158 (793)
T ss_pred HHHHHHHHhHHHHHHHHHHHH--Hhhh-----HHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHH
Confidence 554432 22222221 1110 000000 0000 1134567788888999999999999999999888
Q ss_pred HHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CC-C----hHHHHHHHHHHHhcCCchHHHHHHH
Q 014033 175 EHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP----ST-R----GAELRAAISALKKLGDGPRAHSLLL 245 (432)
Q Consensus 175 ~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~----~~-~----~~el~~~v~lL~rLg~~~~A~~lfL 245 (432)
-.+++....-.+++ .|..+...++..+..|..++.+.+... .+ . ...+..+...+--|.-. -++.++
T Consensus 159 ~~ll~~F~~Yk~v~--~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~leps--vreelI 234 (793)
T KOG2180|consen 159 LQLLNHFIAYKSVD--EIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPS--VREELI 234 (793)
T ss_pred HHHHHHHHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCc--cHHHHH
Confidence 87776443222211 288999999999999999999888742 11 0 11222232222222221 122222
Q ss_pred HHHHHHHHHhcccccccccccccchHHHhHHHHHHHHHHHHHHHHH----hcCCCCcchhhh-HHHHHHHHHHHHHHHHH
Q 014033 246 NAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLA----IFGKETAYTSEL-VMWATRQTEAFAHLVKR 320 (432)
Q Consensus 246 ~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~----~F~~~~~~~S~l-v~Wa~~ei~~f~~l~~r 320 (432)
+..=...-....++=.++. . .....++.+.+= -++.-..+|.. +||-+=.+.-+| +.+|..-=+....++++
T Consensus 235 kwf~~qqL~ey~~IF~en~-E-~a~LDkidrRY~-wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~ 311 (793)
T KOG2180|consen 235 KWFCSQQLEEYEQIFRENE-E-AASLDKLDRRYA-WFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKR 311 (793)
T ss_pred HHHHHHHHHHHHHHHhccH-h-hhhhhhHHHHHH-HHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111111111111111 1 244445554421 12222333443 443321122222 23443333444444444
Q ss_pred HhhcccccccCchHHHHHHHHHHHHHhhhhh-cC-------------------CCchHHHHhhchHhHHHHHHHHHHHHH
Q 014033 321 HALASSAAAGGLRAAAECVQIALGHCSLLEA-RG-------------------LALCPVLIKLFRPSVEQALDANLKRIE 380 (432)
Q Consensus 321 ~v~~~~~~~~~l~~~~ecv~~~~~~c~~L~~-~G-------------------Ldl~~~L~~ll~~~ve~~l~~~~~~i~ 380 (432)
.--. .+.....-+++.++..=..|.- .| ..|.+.+...|.||+.--++..-..+.
T Consensus 312 ~~~~-----~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ 386 (793)
T KOG2180|consen 312 RKKE-----PDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELS 386 (793)
T ss_pred hhhC-----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHH
Confidence 3311 2345555666666665444432 22 377889999999998888888888888
Q ss_pred HHHHHHHhcCCcee
Q 014033 381 ESTAAMAAADDWVL 394 (432)
Q Consensus 381 e~~~~~~~~d~W~~ 394 (432)
+-+...+.+.+|..
T Consensus 387 ellek~v~e~~~~~ 400 (793)
T KOG2180|consen 387 ELLEKFVSEEKWDG 400 (793)
T ss_pred HHHHHHHhhhccCC
Confidence 88888999999974
No 16
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.48 E-value=0.0018 Score=56.43 Aligned_cols=88 Identities=20% Similarity=0.217 Sum_probs=73.3
Q ss_pred ccCCCCCCHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014033 29 LFKSDKFDADVYVKSKC------SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLL 102 (432)
Q Consensus 29 ~~~~~~Fd~e~Yv~~~l------~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll 102 (432)
.|-+|+|||..|..+++ +.+.-++-.--.+|..-.+.+++.|++.|..||...+.-+..|..+++.+..++..+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 58899999999999999 233466777777888888899999999999999999999999999999999998887
Q ss_pred HHHHHHHHHhhhhh
Q 014033 103 STQATLIHGLAEGV 116 (432)
Q Consensus 103 ~~~~~~i~~L~~~~ 116 (432)
......+.-|...+
T Consensus 82 ~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 82 ESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666555554443
No 17
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.04 Score=60.35 Aligned_cols=156 Identities=15% Similarity=0.158 Sum_probs=114.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 014033 46 SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIR-------TSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHI 118 (432)
Q Consensus 46 ~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~-------aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~ 118 (432)
+.+.+++....+.|.+-=+.....|++.|.++|..|-+ ++..|.+-......+++.|.+.+.++++=.+. +
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rde--L 119 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDE--L 119 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH--H
Confidence 55555556666666666677799999999999988865 78888888899999999999999888654333 3
Q ss_pred chhhhh-cccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHh-hhccCCCCHHHHHHHH
Q 014033 119 DSLKGS-ESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE-AKQTKTLDPAMLISLE 196 (432)
Q Consensus 119 ~~l~~~-~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~-~~~~~~~~~~~~~~l~ 196 (432)
..+|.. .+-.- +. + -.+.++.+..+|+.+..||+-+.|-+|-+++..+-..+.. ...... ++.+.
T Consensus 120 qklw~~~~q~K~---Vi--~---vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEg-----Ls~l~ 186 (982)
T KOG3691|consen 120 QKLWAENSQYKK---VI--E---VLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEG-----LSDLR 186 (982)
T ss_pred HHHHHhhhhHHH---HH--H---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhh-----hhHHH
Confidence 444432 11000 00 0 1245678999999999999999999999999998888742 233332 67788
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 014033 197 NTIIDRRQKLADQLAEAACQ 216 (432)
Q Consensus 197 ~~l~~r~~~L~~~L~~~l~~ 216 (432)
.++.-++..|.+.|.++|.+
T Consensus 187 ~ele~~~~~L~~~L~eELv~ 206 (982)
T KOG3691|consen 187 SELEGLLSHLEDILIEELVS 206 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88898889999988888873
No 18
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.71 E-value=0.0082 Score=52.92 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=80.5
Q ss_pred ccCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHhHHHHHHHHHHHHHH
Q 014033 29 LFKSDKFDADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRT-------SKEISDLEGELSSIRNL 101 (432)
Q Consensus 29 ~~~~~~Fd~e~Yv~~~l~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~a-------SkEIs~lE~Em~~L~~l 101 (432)
.+-.++|+|=..+-.++..+.-++.+...++.++++.++..|+..|-+||..|=.+ ...|+.-...+.++++.
T Consensus 15 ~~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~ 94 (142)
T PF04048_consen 15 FMLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKES 94 (142)
T ss_pred HHhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999988444457888899999999999999999999999999774 44555555666666666
Q ss_pred HHHHHHHHHHhhhhhhcchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHH
Q 014033 102 LSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVL 158 (432)
Q Consensus 102 l~~~~~~i~~L~~~~~~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~ 158 (432)
|.+.+..+.+-.+. +..||..... |. +-.+..+.++.+..+|+.+|.|
T Consensus 95 L~~ak~~L~~~~~e--L~~L~~~s~~------~~-~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 95 LQEAKSLLGCRREE--LKELWQRSQE------YK-EMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHhcCCHH--HHHHHHHHHH------HH-HHHHHHHHHHHHHHhHHHHhcC
Confidence 66666655443322 3334332210 00 0000235567788888887753
No 19
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.1 Score=47.38 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=67.3
Q ss_pred hhhhhhhhccccccCCcchhhhhcccCCCCCCHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014033 5 AKTARSRAAAAAENGGAKIEEGLNLFKSDKFDADVYVKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIR 83 (432)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fd~e~Yv~~~l-~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~ 83 (432)
.|++...|.|..-|.- +|==+-..|..+|||.|.|+.... ..+.++||+ +|.---+.+...|-..+-+.|..|+-
T Consensus 4 ~k~sa~~~~g~~~d~~-kLcFdk~eFmkedFdve~f~s~~R~~v~letLrd---dLrlylksl~~aMieLIN~DYADFVn 79 (705)
T KOG2307|consen 4 EKTSAALPNGFYIDES-KLCFDKTEFMKEDFDVERFMSLARQKVDLETLRD---DLRLYLKSLQNAMIELINDDYADFVN 79 (705)
T ss_pred ccccccCCCCCCCCcc-ccccChhhhccccCCHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 5666667776554332 233344669999999999999877 666666663 34333346667888999999999998
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 84 TSKEISDLEGELSSIRNLLSTQATLIHG 111 (432)
Q Consensus 84 aSkEIs~lE~Em~~L~~ll~~~~~~i~~ 111 (432)
-|--...|..-+.+++.-|...+.-|.+
T Consensus 80 LStnLVgld~aln~i~qpL~qlreei~s 107 (705)
T KOG2307|consen 80 LSTNLVGLDDALNKIEQPLNQLREEIKS 107 (705)
T ss_pred hhhhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 7765555554444444444444444444
No 20
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=93.25 E-value=17 Score=40.60 Aligned_cols=222 Identities=13% Similarity=0.062 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCchHHHH
Q 014033 165 DEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHS 242 (432)
Q Consensus 165 eeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~--~~~~~el~~~v~lL~rLg~~~~A~~ 242 (432)
.+|..++.+-..+.+.....+. +...+.+|......+.+.|.+++... .-.....++++..|..++.+..+.+
T Consensus 75 ~~~A~il~~L~~ls~~~~~~~~-----~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~ 149 (710)
T PF07393_consen 75 EEAAKILRNLLRLSKELSDIPG-----FEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCID 149 (710)
T ss_pred HHHHHHHHHHHHHHHhcCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 6777777776666666533332 66778888888888999999888853 2235799999999999999999999
Q ss_pred HHHHHHHHHHH-Hhcccc---c--------ccccccccchHHHhHHHHHHHHHHHHH----HHHHhcCCCCcchhhhHHH
Q 014033 243 LLLNAHYQRYQ-YSMQSL---R--------PSSTSYGGAYTAALSQLVFSAIAQAAC----DSLAIFGKETAYTSELVMW 306 (432)
Q Consensus 243 lfL~~rs~~l~-~~l~~l---~--------~~g~~~~~~Yi~~ls~~~Fs~I~~t~~----~~~~~F~~~~~~~S~lv~W 306 (432)
.|...|.--+. ..+... . ...+..+...... -..+|..|..++. .-..+|++.......|+.-
T Consensus 150 ~fi~k~~~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~-l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fier 228 (710)
T PF07393_consen 150 FFINKHEFFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEES-LDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIER 228 (710)
T ss_pred HHHHhChhhhhhhhhccccccchhHHHHhccCcccccccchHH-HHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 99998866552 122110 0 0011111122222 2335555555554 4668998764455555544
Q ss_pred HHHH-HHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHhhhhhcCCC--------chHHHHhhchHhHHHHH--HHH
Q 014033 307 ATRQ-TEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLA--------LCPVLIKLFRPSVEQAL--DAN 375 (432)
Q Consensus 307 a~~e-i~~f~~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c~~L~~~GLd--------l~~~L~~ll~~~ve~~l--~~~ 375 (432)
+-++ |..|+..+=......+.. .=+++...+...+..-+..|.+.+.. +...|..++....+.-+ +.|
T Consensus 229 vf~~~I~~~i~~lL~~a~~~s~~-~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~~l~~~~Y 307 (710)
T PF07393_consen 229 VFEQVIQEYIESLLEEASSISTL-AYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEPYLEDDEY 307 (710)
T ss_pred HHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHcCcchH
Confidence 4443 444444433333111100 01334444444555556777776322 44444443333333333 555
Q ss_pred HHHHHHHHHHHHhc--CCce
Q 014033 376 LKRIEESTAAMAAA--DDWV 393 (432)
Q Consensus 376 ~~~i~e~~~~~~~~--d~W~ 393 (432)
++.-.+.++..... .+|.
T Consensus 308 l~~E~~~l~~~~~~~l~~f~ 327 (710)
T PF07393_consen 308 LEEEKRSLKELLESILSRFN 327 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555554444332 3455
No 21
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.90 E-value=43 Score=37.28 Aligned_cols=134 Identities=18% Similarity=0.214 Sum_probs=87.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--h
Q 014033 40 YVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGV--H 117 (432)
Q Consensus 40 Yv~~~l~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~--~ 117 (432)
.+++.++.+ +..+.-.+|....+.-+.++++.-=.||+.||.+-+|+.++.++..+|++.+++.-.-++...... .
T Consensus 36 ~lRs~~d~~--~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~ 113 (800)
T KOG2176|consen 36 TLRSVYDGN--QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVK 113 (800)
T ss_pred HHHHHHccC--CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 445444222 444555667777777888888999999999999999999999999999999888665555443321 1
Q ss_pred cchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHH
Q 014033 118 IDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAA 179 (432)
Q Consensus 118 ~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~ 179 (432)
.+.|...+-.. .+ +. .--+..+.---+.|+-..+...+.+++|=.|+..++..++..-
T Consensus 114 ~e~lv~~r~~~-rn-it--~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~yL 171 (800)
T KOG2176|consen 114 KEDLVRCRTQS-RN-IT--EAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVYL 171 (800)
T ss_pred HHHHHHHHHHH-hh-HH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 12222111000 00 00 0000112223577788888899999999999999999887763
No 22
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=36 Score=35.76 Aligned_cols=219 Identities=14% Similarity=0.124 Sum_probs=116.3
Q ss_pred hhcccCCCCCCHHHHHHHhc-----CCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH
Q 014033 26 GLNLFKSDKFDADVYVKSKC-----SLN-------EKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEG 93 (432)
Q Consensus 26 ~~~~~~~~~Fd~e~Yv~~~l-----~~~-------~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~ 93 (432)
++..|++..|||..||...+ ..+ ++-|+.++.+|+-........+...--.-...-=+++|+...|..
T Consensus 2 Dlg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~ 81 (828)
T KOG4182|consen 2 DLGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQA 81 (828)
T ss_pred CCccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHH
Confidence 34679999999999999988 122 244666666666555554444444333333445578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhcchhhhhcccccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHH
Q 014033 94 ELSSIRNLLSTQATLIHGLAE--GVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTAL 171 (432)
Q Consensus 94 Em~~L~~ll~~~~~~i~~L~~--~~~~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll 171 (432)
+...|+.-+....-.+..... +.|+..|. +.+... .++..-. +....-.-+..+..+|..-.+.++..-|-+-+
T Consensus 82 Da~~Lq~kma~il~el~~aegesadCiAaLa-Rldn~k-QkleaA~--esLQdaaGl~nL~a~lED~Fa~gDL~~aadkL 157 (828)
T KOG4182|consen 82 DAHRLQEKMAAILLELAAAEGESADCIAALA-RLDNKK-QKLEAAK--ESLQDAAGLGNLLAELEDGFARGDLKGAADKL 157 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHH-HhccHH-HHHHHHH--HHHHhhccHHHHHHHHHHHhhcCCchhHHHHH
Confidence 999999887654333332211 11233221 111000 0000000 00011123455666777777888888887777
Q ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHHH---HHHHHHHH-HHHHHhcCCCCChHHHHHHHHHHHhcCCchHHHHHHHHH
Q 014033 172 DEGEHLAAEAKQTKTLDPAMLISLENTII---DRRQKLAD-QLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLNA 247 (432)
Q Consensus 172 ~~~~~~l~~~~~~~~~~~~~~~~l~~~l~---~r~~~L~~-~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A~~lfL~~ 247 (432)
..-++.+......+. +...+.+++ .|...|++ .|.+.+.... ......-+..++|+|+..+....|=+.
T Consensus 158 aalqkcL~A~~elae-----fAe~qkQlE~~edRLEAlaqPrltda~a~~k--td~AQd~r~I~irIgRfkqLelqY~~V 230 (828)
T KOG4182|consen 158 AALQKCLHAQEELAE-----FAERQKQLEDFEDRLEALAQPRLTDAFAEGK--TDQAQDFRQIFIRIGRFKQLELQYRAV 230 (828)
T ss_pred HHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHcCchHHHHHHccC--hHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 766666643332221 222333332 22222221 2222222111 124455567889999998877666666
Q ss_pred HHHHHHHh
Q 014033 248 HYQRYQYS 255 (432)
Q Consensus 248 rs~~l~~~ 255 (432)
+.+-++..
T Consensus 231 q~k~ikQl 238 (828)
T KOG4182|consen 231 QKKFIKQL 238 (828)
T ss_pred HHHHHHHH
Confidence 66655543
No 23
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=81.73 E-value=87 Score=34.38 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHh-ccccccccc-----------
Q 014033 202 RRQKLADQLAEAACQPS----TRGAELRAAISALKK-LGDGPRAHSLLLNAHYQRYQYS-MQSLRPSST----------- 264 (432)
Q Consensus 202 r~~~L~~~L~~~l~~~~----~~~~el~~~v~lL~r-Lg~~~~A~~lfL~~rs~~l~~~-l~~l~~~g~----------- 264 (432)
--++|..-+..++++.. -..+.+++|+..|.. ..-.....+.|-.+|++.+-.. +.++...|.
T Consensus 167 a~erl~~w~q~e~~~l~~~~~~~~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~ 246 (618)
T PF06419_consen 167 AYERLYRWVQRECRSLNLDNPEVSPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELH 246 (618)
T ss_pred HHHHHHHHHHHHHhhhhhcCcccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhh
Confidence 33444444454554331 134688899988864 3334557899999999988777 444542222
Q ss_pred -ccccchHHHhHHHHHHHHHHHHHHHHHhcCCC
Q 014033 265 -SYGGAYTAALSQLVFSAIAQAACDSLAIFGKE 296 (432)
Q Consensus 265 -~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~ 296 (432)
.||..||+.+=--+.+.+..=.+-...+|+..
T Consensus 247 AhDP~RYvGDmLAwvHq~~a~E~E~l~~Lf~~~ 279 (618)
T PF06419_consen 247 AHDPLRYVGDMLAWVHQAIASEREFLESLFKFD 279 (618)
T ss_pred ccChHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 27889999998889999988888888999754
No 24
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=72.64 E-value=28 Score=34.23 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcccccccCchHHHHHHHHHHHHH----hhhhhcCCCchHHHHhhchHhHHHHHHHHHHHHHHHHHHHHhc
Q 014033 314 FAHLVKRHALASSAAAGGLRAAAECVQIALGHC----SLLEARGLALCPVLIKLFRPSVEQALDANLKRIEESTAAMAAA 389 (432)
Q Consensus 314 f~~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c----~~L~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i~e~~~~~~~~ 389 (432)
|-.++++++-.-. .-+.+|++.+.... ..+....+.=-|.|...+...+.+.++.......+.|..++.-
T Consensus 195 fe~Li~~~i~~l~------~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~ 268 (295)
T PF01031_consen 195 FESLIRKQIEKLE------EPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDM 268 (295)
T ss_dssp HHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777772221 11234555444443 3322233332356788888888999999999999999998888
Q ss_pred CC-ceecCCC
Q 014033 390 DD-WVLTYPP 398 (432)
Q Consensus 390 d~-W~~~~~~ 398 (432)
|. +.-+..|
T Consensus 269 E~~~i~T~~~ 278 (295)
T PF01031_consen 269 ELSYINTQHP 278 (295)
T ss_dssp HTTS--TTST
T ss_pred hcccCCCCCH
Confidence 77 6554443
No 25
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=72.47 E-value=12 Score=33.63 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014033 50 KEIRQLCSYLLDLKRASAEEMRK-SVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEG 115 (432)
Q Consensus 50 ~~l~~~~~~L~~~~~~~~~~Lq~-~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~ 115 (432)
++.+++..|+. ++.++|.. +.-++|.+..+.-+.+.+++.|+.++.+.++..+..+......
T Consensus 40 ~~~~~l~~Ei~----~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 40 KEQRQLRKEIL----QLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHH----HHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 44455554 6778999999999999999999999999998887777655443
No 26
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=68.63 E-value=1.7e+02 Score=31.29 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014033 37 ADVYVKSKCSLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGV 116 (432)
Q Consensus 37 ~e~Yv~~~l~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~ 116 (432)
.+.|+++ .+++.++..++.... ..=+.|......-.+.-=.+|.||..|...=.+|...|...+.+...|..-+
T Consensus 6 i~dy~~e-----~~~~~~Lh~~i~~cd-~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i 79 (508)
T PF04129_consen 6 IQDYLKE-----SENFADLHNQIQECD-SILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFI 79 (508)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567765 456777777776544 4445677777666677777888999888888888888888777777666653
No 27
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.19 E-value=45 Score=32.56 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHH
Q 014033 35 FDADVYVKSKCSLNEKEIRQLCSYLLDLKRAS------AEEMRKSVYANYAAFIR 83 (432)
Q Consensus 35 Fd~e~Yv~~~l~~~~~~l~~~~~~L~~~~~~~------~~~Lq~~Vy~NY~~FI~ 83 (432)
=+||.|+..+= .-+--||+++.+|.+-.+++ ..+||...|.=--.+|.
T Consensus 54 P~PEQYLTPLQ-QKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 54 PNPEQYLTPLQ-QKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred CCHHHhcChHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 48999998764 22455677776665443333 33566666665555554
No 28
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.86 E-value=56 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=26.4
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 201 (432)
.++|++|++++..|=..+...-..+. ++.....++.++.+
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~~~~-~~~~~~~l~~k~~~ 57 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALKSES-NPERRQALRQKMKE 57 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHST-THHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 89999999999999888865543332 23323445555554
No 29
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=55.96 E-value=1.8e+02 Score=32.47 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=62.5
Q ss_pred CCCCCCHHHH-HHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014033 31 KSDKFDADVY-VKSKC-SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQAT 107 (432)
Q Consensus 31 ~~~~Fd~e~Y-v~~~l-~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~ 107 (432)
.++.|.|.-- |.+++ ..+..+|++++..|.... .=...|..++-+.=.++=.+..+.+.+...+..|..++...+.
T Consensus 244 ~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve-~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 244 KSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVE-REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred CCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567877554 78888 999999999999998874 6667788888888889999999999998888888888666444
No 30
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=55.32 E-value=93 Score=31.18 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhccccccccc------ccccchHHHhH
Q 014033 204 QKLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSST------SYGGAYTAALS 275 (432)
Q Consensus 204 ~~L~~~L~~~l~~~--~~~~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~~g~------~~~~~Yi~~ls 275 (432)
+.|...+.+.+... .-...++.+...++.-||..+++.+.|.+.-...|....|.+..+.. ..+..|...++
T Consensus 6 ~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~~~~~~~~~~~~a~~lt 85 (324)
T smart00762 6 ETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAGASDDTRAAVFYADTLT 85 (324)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHHH
Confidence 33444444444431 23467999999999999999999988887766666555444432211 13567888777
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014033 276 QLVFSAIAQAACDSLAI 292 (432)
Q Consensus 276 ~~~Fs~I~~t~~~~~~~ 292 (432)
.+ |..|+.+++++..+
T Consensus 86 ~L-fe~ia~ii~~h~~~ 101 (324)
T smart00762 86 HL-FENVATIIEQHQPV 101 (324)
T ss_pred HH-HHHHHHHHHhccHH
Confidence 76 88888888877644
No 31
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=52.48 E-value=79 Score=24.66 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=25.8
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 201 (432)
.++|++|+.++.++=..+...-..+.-++.....+..++.+
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~e 59 (76)
T cd02681 19 EGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNE 59 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 79999999999998888865311111122224456666655
No 32
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=51.32 E-value=2.4e+02 Score=28.19 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccc------cccccchHHHhHH
Q 014033 205 KLADQLAEAACQP--STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSS------TSYGGAYTAALSQ 276 (432)
Q Consensus 205 ~L~~~L~~~l~~~--~~~~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~~g------~~~~~~Yi~~ls~ 276 (432)
.|...+.+.+... .-...++.+...+..-||..+.+.+.|-+.=...|....+..-... +..++.|...|+.
T Consensus 7 ~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~~~~~~~~~~~lt~ 86 (331)
T PF08318_consen 7 SLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSDSRSPVFYADALTK 86 (331)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHH
Confidence 3444444444432 2356799999999999999999988887776565555444332111 2245677777665
Q ss_pred HHHHHHHHHHHH----HHHhcCC
Q 014033 277 LVFSAIAQAACD----SLAIFGK 295 (432)
Q Consensus 277 ~~Fs~I~~t~~~----~~~~F~~ 295 (432)
.|..|+.++++ -...||.
T Consensus 87 -LFe~ia~ii~~h~~lI~~~yG~ 108 (331)
T PF08318_consen 87 -LFEHIATIIEQHQPLIEKYYGP 108 (331)
T ss_pred -HHHHHHHHHHHccHHHHHHcCC
Confidence 56778888887 4456664
No 33
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.17 E-value=73 Score=24.83 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=30.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHhcCC
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTII----DRRQKLADQLAEAACQP 217 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~----~r~~~L~~~L~~~l~~~ 217 (432)
.++|++|+++|..+=..+..-+ ++..-..++.++. +-..+ +++|...+..|
T Consensus 19 ~gny~eA~~lY~~ale~~~~ek-----n~~~k~~i~~K~~~~a~~yl~R-AE~Lk~~l~~~ 73 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTS-----NETMDQALQTKLKQLARQALDR-AEALKESMSKA 73 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc-----ChhhHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 6899999999998766665422 2222455666664 22222 55555555544
No 34
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=51.04 E-value=4.2e+02 Score=30.11 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=112.4
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhcccccccccccccCCCCCchhhHHhhh
Q 014033 72 KSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASKNDLLNLENKEPSDLEKWSVEF 151 (432)
Q Consensus 72 ~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~~~l~~~~e~~~~~~l~~~~~~~~~~~~~wl~el 151 (432)
++=-+||.+|-.+-+-.+.|+--+.+-..++++|+.+.+.+.... . ..+. +.+. .-+
T Consensus 349 kldNQemkafKGiedRf~aLd~miaSC~rlvnEqKeLahgflAn~-k-----eaek--------ikDa---------n~L 405 (1424)
T KOG4572|consen 349 KLDNQEMKAFKGIEDRFSALDFMIASCERLVNEQKELAHGFLANI-K-----EAEK--------IKDA---------NKL 405 (1424)
T ss_pred hhcchhhHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----hccc--------cccc---------ccC
Confidence 334579999999999999999999999999999999988876653 0 1110 1111 112
Q ss_pred hhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 014033 152 PDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISAL 231 (432)
Q Consensus 152 pd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL 231 (432)
| |.|. +.|-.++.-. ..... +..++.++++-++.++.-|.-.+.--+. ..|
T Consensus 406 P---dic~-----eHan~lliif----eN~re--------fldikqkcdqaKQEiakNLhtRlk~ccf---------qml 456 (1424)
T KOG4572|consen 406 P---DICE-----EHANCLLIIF----ENFRE--------FLDIKQKCDQAKQEIAKNLHTRLKGCCF---------QML 456 (1424)
T ss_pred C---hHHH-----HHHHHHHHHH----HHHHH--------HHHHHHHHhHHHHHHHHHHHhhhhhhhe---------eeh
Confidence 2 2333 2222222211 11111 5668889999999999988887764322 222
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHhcccccccccccccchHHHhHHHHHHHHHHHHHHHHHhcCCCCcchhhhHHHHHHHH
Q 014033 232 KKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYTSELVMWATRQT 311 (432)
Q Consensus 232 ~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~~~~~S~lv~Wa~~ei 311 (432)
.++..+.. -...|......++.++.-+..-.+ -|..|.-.++.++-.-+.. ..|..--++-......|..=-..--
T Consensus 457 ~adqdgek-~~allel~ieale~hmdiieaird-aP~lYclaVsEiVRRklfi--ke~eEWaga~skd~aqf~eaEekkR 532 (1424)
T KOG4572|consen 457 DADQDGEK-DIALLELKIEALEIHMDIIEAIRD-APILYCLAVSEIVRRKLFI--KELEEWAGAHSKDCAQFSEAEEKKR 532 (1424)
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 22222221 123344445555555444332222 3578988888776544322 1222222221122345555555567
Q ss_pred HHHHHHHHHHhhc
Q 014033 312 EAFAHLVKRHALA 324 (432)
Q Consensus 312 ~~f~~l~~r~v~~ 324 (432)
++|...|++|.+.
T Consensus 533 EqfGk~fkKhFLh 545 (1424)
T KOG4572|consen 533 EQFGKKFKKHFLH 545 (1424)
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998764
No 35
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=49.90 E-value=1.1e+02 Score=23.20 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=30.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQK 205 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~ 205 (432)
.++|++|+.++..|-..+...-..+. ++.....+..++.+-..+
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~~~~~~~-~~~~~~~~~~k~~eyl~r 64 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLEGIKVES-DSKRREAVKAKAAEYLDR 64 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHH
Confidence 68999999999999888876544332 344355566666654444
No 36
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=49.59 E-value=1.1e+02 Score=23.83 Aligned_cols=49 Identities=29% Similarity=0.387 Sum_probs=30.7
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH---HHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID---RRQKLADQL 210 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---r~~~L~~~L 210 (432)
.++|++|+.+|..+=..+..+-.... ++..-..++.++.+ |...|.+.|
T Consensus 19 ~g~y~eAl~~Y~~aie~l~~~lk~e~-d~~~k~~~r~ki~eY~~RAE~Lk~~l 70 (77)
T cd02683 19 EGRFQEALVCYQEGIDLLMQVLKGTK-DEAKKKNLRQKISEYMDRAEAIKKRL 70 (77)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998888766432221 33334556666654 444444443
No 37
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=47.13 E-value=1.9e+02 Score=27.61 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=42.3
Q ss_pred hHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCC-CCHHHHHHHHHHHHHHHHHHH
Q 014033 146 KWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKT-LDPAMLISLENTIIDRRQKLA 207 (432)
Q Consensus 146 ~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~-~~~~~~~~l~~~l~~r~~~L~ 207 (432)
+-|.++-|++--++.+++||+|..++.+..+.+......+. .+...+..|...+.+-+..++
T Consensus 3 ~eLd~~sd~~lqlvk~~~yeeA~q~l~~fs~~f~~~~~~~~~~t~e~iralT~t~~~a~~al~ 65 (232)
T PF09577_consen 3 KELDQLSDEALQLVKQGKYEEAKQLLEYFSEQFTSVDFKGRPLTMEEIRALTETIEEAKKALT 65 (232)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999998777754432221 333335555555555544444
No 38
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=46.98 E-value=1.3e+02 Score=29.09 Aligned_cols=127 Identities=28% Similarity=0.367 Sum_probs=78.0
Q ss_pred chHHHhHHHHHHHHHHHHHHHHHhc-CCC-CcchhhhHHHHHHHHHHHHHHHHHHh-hccc----ccccCchHHHHHH--
Q 014033 269 AYTAALSQLVFSAIAQAACDSLAIF-GKE-TAYTSELVMWATRQTEAFAHLVKRHA-LASS----AAAGGLRAAAECV-- 339 (432)
Q Consensus 269 ~Yi~~ls~~~Fs~I~~t~~~~~~~F-~~~-~~~~S~lv~Wa~~ei~~f~~l~~r~v-~~~~----~~~~~l~~~~ecv-- 339 (432)
..+-.++.+=|+.|-.+.. -..-| ++- ..+...++..|.+|...|.-+.++-- ++.. ++-.+|.-.++-.
T Consensus 69 ~llHaiAhIE~~AIdLa~D-a~~RF~~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~t~~ 147 (253)
T PF04305_consen 69 ALLHAIAHIELNAIDLALD-AIYRFHPNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQTAH 147 (253)
T ss_pred HHHHHhcchHHHHHHHHHH-HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHhcc
Confidence 4444555555666555332 22334 332 35678888999999988877766621 1221 1112332222111
Q ss_pred ----HHHHHHHhhhhhcCCCchHHHHhhchHhHHHHHHHHHHHH-HHHHHHHHhcCCceecCC
Q 014033 340 ----QIALGHCSLLEARGLALCPVLIKLFRPSVEQALDANLKRI-EESTAAMAAADDWVLTYP 397 (432)
Q Consensus 340 ----~~~~~~c~~L~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i-~e~~~~~~~~d~W~~~~~ 397 (432)
..++-+ -.|+..|||..+-+..-|+..--.....-++.| .|.|.|...-.+|-..-+
T Consensus 148 dl~~R~A~vp-~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c 209 (253)
T PF04305_consen 148 DLLARMALVP-RVLEARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIGHVAIGNRWFRYLC 209 (253)
T ss_pred CHHHHHHHHH-HHHHhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 112222 358899999999999999876555555666666 899999999999987643
No 39
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=45.24 E-value=42 Score=26.08 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchH---HHHHH-HHH
Q 014033 198 TIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDGPR---AHSLL-LNA 247 (432)
Q Consensus 198 ~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~---A~~lf-L~~ 247 (432)
++.+....|+.-|..-++...++..|...++.+|.++|+..+ .++.| |..
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~~~E~~Ll~DvlGle~ 56 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQRNEFILLSDVLGLEH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHTTHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccch
Confidence 345556666777777777778889999999999999987544 36666 655
No 40
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.65 E-value=3e+02 Score=26.56 Aligned_cols=78 Identities=15% Similarity=0.150 Sum_probs=41.2
Q ss_pred HHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCC
Q 014033 159 LAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQP--STRGAELRAAISALKKLGD 236 (432)
Q Consensus 159 Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~--~~~~~el~~~v~lL~rLg~ 236 (432)
+++++|++|++++-.+-..+-+.+...+ . ..|+-.+.+.+... ........+.+.++..++.
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~s--g--------------~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~ 64 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGS--G--------------ADLALLLIEVYEKSEDPVDEESIARLIELISLFPP 64 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHH--H--------------HHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-T
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcch--H--------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 4689999999999998888866543221 0 11122222222211 1233445566666666665
Q ss_pred chHHHHHHHHHHHHHH
Q 014033 237 GPRAHSLLLNAHYQRY 252 (432)
Q Consensus 237 ~~~A~~lfL~~rs~~l 252 (432)
.+-.+..|++..-+|=
T Consensus 65 ~~p~r~~fi~~ai~WS 80 (260)
T PF04190_consen 65 EEPERKKFIKAAIKWS 80 (260)
T ss_dssp T-TTHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHH
Confidence 5545777777666665
No 41
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.24 E-value=1.4e+02 Score=22.78 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=31.5
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEA 213 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~ 213 (432)
.++|++|+.++..+=..+..+-.... ++.....++.++.+-..+ ++.|...
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~R-aE~LK~~ 69 (75)
T cd02678 19 AGNYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDR-AEKLKEY 69 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 78999999999998888766543222 344345566666654333 3333333
No 42
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=43.35 E-value=30 Score=22.32 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=15.8
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q 014033 156 DVLLAERRIDEALTALDEGE 175 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~ 175 (432)
+++...++|++|+++++++=
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999998743
No 43
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=40.88 E-value=1.3e+02 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=26.2
Q ss_pred HccCHHHHHHHHHHHHHHHHhhhc-cCCCCHHHHHHHHHHHHH
Q 014033 160 AERRIDEALTALDEGEHLAAEAKQ-TKTLDPAMLISLENTIID 201 (432)
Q Consensus 160 aer~feeAv~ll~~~~~~l~~~~~-~~~~~~~~~~~l~~~l~~ 201 (432)
.+++|++|+.++.++=..|.+.-. .|+ ++. ...++.++.+
T Consensus 18 ~~gr~~eAi~~Y~~aIe~L~q~~~~~pD-~~~-k~~yr~ki~e 58 (75)
T cd02682 18 KEGNAEDAITNYKKAIEVLSQIVKNYPD-SPT-RLIYEQMINE 58 (75)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhCCC-hHH-HHHHHHHHHH
Confidence 389999999999999888866533 222 221 3445555554
No 44
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.48 E-value=1.8e+02 Score=22.48 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l 214 (432)
.++|++|+.+|..|=..+..+-... .++.....|+.++.+-..+ ++.|...+
T Consensus 19 ~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~R-AE~LK~~l 70 (75)
T cd02684 19 RGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSR-AEELKALI 70 (75)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7899999999999877776553322 2444445666666654444 34444333
No 45
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=37.13 E-value=1.8e+02 Score=21.97 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=28.5
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQ 204 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~ 204 (432)
.++|++|+.++..|=..+..+-.... ++.....+..++.+-..
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~~~~~~~~-~~~~k~~l~~k~~~yl~ 61 (75)
T cd02656 19 DGNYEEALELYKEALDYLLQALKAEK-EPKLRKLLRKKVKEYLD 61 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHH
Confidence 48999999999998888876543322 34434556666665433
No 46
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=36.03 E-value=3.1e+02 Score=24.31 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 75 YANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110 (432)
Q Consensus 75 y~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~ 110 (432)
+.||..||.. ||..+.+.++.++.+...+.
T Consensus 66 ~~nyq~fI~~------Le~~I~q~~~~~~~~~~~ve 95 (148)
T COG2882 66 WQNYQQFISQ------LEVAIDQQQSQLSKLRKQVE 95 (148)
T ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3699999875 55556666555555544443
No 47
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=35.58 E-value=5.1e+02 Score=26.62 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhcccccc
Q 014033 51 EIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFASK 130 (432)
Q Consensus 51 ~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~~~l~~~~e~~~~ 130 (432)
++..+..++. ......++|+..-+|-..|-....|+..+|.++....+.++++...+..++.+
T Consensus 64 ~l~a~~~q~~--~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is~~--------------- 126 (391)
T COG2959 64 ELQALQQQLK--ALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISGS--------------- 126 (391)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccC---------------
Confidence 3333444433 23566788888899999999999999999999999999988866655554421
Q ss_pred cccccccCCCCCchhhHHhhhhhh-----HHHHHHccCHHHHHHHHHHHHHHHHhhhc
Q 014033 131 NDLLNLENKEPSDLEKWSVEFPDL-----LDVLLAERRIDEALTALDEGEHLAAEAKQ 183 (432)
Q Consensus 131 ~~l~~~~~~~~~~~~~wl~elpd~-----Ldv~Iaer~feeAv~ll~~~~~~l~~~~~ 183 (432)
+.-+|+..--|- ...+...++.+.|+.++..+...|....+
T Consensus 127 ------------~~~dWllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~Nd 172 (391)
T COG2959 127 ------------DRKDWLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAMND 172 (391)
T ss_pred ------------ChhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccC
Confidence 112354433332 24566789999999999999999987644
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=35.22 E-value=9.4e+02 Score=29.61 Aligned_cols=61 Identities=13% Similarity=0.232 Sum_probs=38.6
Q ss_pred hhhcccCCCCCCHHHHHHHhc-CCCH-----------------------HHHHHHHHHHHHHHHHHHHHHHH--HHHHhH
Q 014033 25 EGLNLFKSDKFDADVYVKSKC-SLNE-----------------------KEIRQLCSYLLDLKRASAEEMRK--SVYANY 78 (432)
Q Consensus 25 ~~~~~~~~~~Fd~e~Yv~~~l-~~~~-----------------------~~l~~~~~~L~~~~~~~~~~Lq~--~Vy~NY 78 (432)
.+...|++..|+++..-+.++ ..+. ..|+....++.......+-+-|+ ..|+.+
T Consensus 740 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~r~s~~p~~p~~gr~are~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 819 (1486)
T PRK04863 740 GDPDSFDDSVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRIEQLRAEREELAERYATLSFDVQKLQRLHQAF 819 (1486)
T ss_pred CChhHHhccCccHHHhcCCeeeeecchhhhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345779999999998888877 5442 22333333344444444444443 388999
Q ss_pred HHHHHHH
Q 014033 79 AAFIRTS 85 (432)
Q Consensus 79 ~~FI~aS 85 (432)
++||...
T Consensus 820 ~~~~~~~ 826 (1486)
T PRK04863 820 SRFIGSH 826 (1486)
T ss_pred HHHHhhC
Confidence 9999866
No 49
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=34.78 E-value=4.3e+02 Score=25.52 Aligned_cols=187 Identities=13% Similarity=0.090 Sum_probs=90.1
Q ss_pred HHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCc
Q 014033 158 LLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLGDG 237 (432)
Q Consensus 158 ~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~ 237 (432)
..++++++-|..++.|++..+.. .+|.....+...+-..-..+.++ =.+......=+.++..++-+.++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~------~~~~~~~~La~~~yn~G~~l~~~----~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNS------LDPDMAEELARVCYNIGKSLLSK----KDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhc------CCcHHHHHHHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHHHhhhhc
Confidence 46799999999999999988751 12222223332222222221111 001111123466777776554443
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccccccchHHHhHHHHHHHHHHHHHHHHHhcCCCCcch-hhhHHHHH-HHHHHHH
Q 014033 238 PRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGKETAYT-SELVMWAT-RQTEAFA 315 (432)
Q Consensus 238 ~~A~~lfL~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~~~~~~-S~lv~Wa~-~ei~~f~ 315 (432)
.....-+..-|-..++-..+..-..++. .|..+ ...+++.-..-||+.|... =.+-.|.+ .-.+.+.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~---~~~~k--------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTY---ESVEK--------ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCCh---HHHHH--------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 3333333333333333333333222321 33333 1222223356677654332 33344444 2244455
Q ss_pred HHHHHHhhcccccccCchHHHHHHHHHHHHHhhhhhcCCCchHHHHhhchHh
Q 014033 316 HLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPS 367 (432)
Q Consensus 316 ~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c~~L~~~GLdl~~~L~~ll~~~ 367 (432)
+.+.+=+.+......++..+..|+.....++..+ .+-.+..+|...+.|.
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~--a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL--AAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH--HHHHHHHHHHHHhCCC
Confidence 5555555443322257888888888888887643 4444445555555544
No 50
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.68 E-value=2.4e+02 Score=22.21 Aligned_cols=50 Identities=12% Similarity=0.063 Sum_probs=32.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCC----CHH--HHHHHHHHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTL----DPA--MLISLENTIIDRRQKLADQL 210 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~----~~~--~~~~l~~~l~~r~~~L~~~L 210 (432)
.+..++|+.+|.+|.+.+.+-...|.- .+. -...++.|+......+.+.|
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 377899999999999999766554431 111 13456666666666555554
No 51
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.70 E-value=97 Score=20.74 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=20.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHhh
Q 014033 156 DVLLAERRIDEALTALDEGEHLAAEA 181 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~~l~~~ 181 (432)
|+.+...+|++|++-+.++=++..++
T Consensus 9 eisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 9 EISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 57788999999999998876665543
No 52
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=30.06 E-value=73 Score=29.86 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.8
Q ss_pred hcccCCCCCCHHHHHHHhc
Q 014033 27 LNLFKSDKFDADVYVKSKC 45 (432)
Q Consensus 27 ~~~~~~~~Fd~e~Yv~~~l 45 (432)
+=.|+.|.|-||+|-+.++
T Consensus 133 lYa~~rp~FVvD~Yt~R~l 151 (215)
T COG2231 133 LYALDRPVFVVDKYTRRLL 151 (215)
T ss_pred HHHhcCcccchhHHHHHHH
Confidence 4458999999999999988
No 53
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.00 E-value=2.5e+02 Score=23.87 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.9
Q ss_pred HHHHHHccCHHHHHHHHHHHH
Q 014033 155 LDVLLAERRIDEALTALDEGE 175 (432)
Q Consensus 155 Ldv~Iaer~feeAv~ll~~~~ 175 (432)
=+.++..++|++|...+..+-
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 366778999999999997644
No 54
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=29.45 E-value=5.1e+02 Score=24.76 Aligned_cols=62 Identities=19% Similarity=0.083 Sum_probs=40.2
Q ss_pred hHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhh--ccCCCCHHHHHHHHHHHHHHHHHHH
Q 014033 146 KWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAK--QTKTLDPAMLISLENTIIDRRQKLA 207 (432)
Q Consensus 146 ~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~--~~~~~~~~~~~~l~~~l~~r~~~L~ 207 (432)
+.|.++.|+.=-+..+++||+|.+++....+-+.... +.+-.+.+.+..|....++-.+.|+
T Consensus 3 ~eL~~lsD~~LQl~K~~~yeeAkqvL~yFs~~F~~~~~~~~~~~t~~elR~iT~~~e~a~~al~ 66 (233)
T TIGR02878 3 EELNDLSDQVLQLTKQARYEEAKQVLEYFSKQFVSAGKEKDPMLTMDQLRTITLTYERAVQALT 66 (233)
T ss_pred hhHhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHhcccccCcccCHHHHHHHHHHHHHHHHHHh
Confidence 3466777777788899999999999998877765443 2221244445555555544444443
No 55
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=29.44 E-value=48 Score=24.93 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=19.5
Q ss_pred HhcCCCCcchhhhH-----HHHHHHHHHHH
Q 014033 291 AIFGKETAYTSELV-----MWATRQTEAFA 315 (432)
Q Consensus 291 ~~F~~~~~~~S~lv-----~Wa~~ei~~f~ 315 (432)
.||..+|+..|.+- -||++.+|.|-
T Consensus 34 ~CF~~~PsikSSLkFLRkTpWAR~KVE~lY 63 (64)
T PF09905_consen 34 NCFKNNPSIKSSLKFLRKTPWAREKVENLY 63 (64)
T ss_dssp SSTTSS--HHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCCCCchHHHHHHHhcCHhHHHHHHHhc
Confidence 68998888888876 89999999873
No 56
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=28.80 E-value=92 Score=20.37 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=23.4
Q ss_pred HHhhhhhhHHHHHHccCHHHHHHHHHHHHH
Q 014033 147 WSVEFPDLLDVLLAERRIDEALTALDEGEH 176 (432)
Q Consensus 147 wl~elpd~Ldv~Iaer~feeAv~ll~~~~~ 176 (432)
-|.++-..+..++...+|++|..+=+....
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~ 32 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKA 32 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 466788899999999999999888665443
No 57
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=28.28 E-value=2.8e+02 Score=21.41 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAA 214 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l 214 (432)
.++|++|+.++..+=..+...-..+ .++..-..++.++.+-..+-.+.+...|
T Consensus 19 ~~~y~eA~~~Y~~~i~~~~~~~k~e-~~~~~k~~ir~K~~eYl~RAE~i~~~~l 71 (75)
T cd02677 19 EGDYEAAFEFYRAGVDLLLKGVQGD-SSPERREAVKRKIAEYLKRAEEILRLHL 71 (75)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999877776543222 2344355666666665444443333333
No 58
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=27.40 E-value=93 Score=19.74 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHhh
Q 014033 156 DVLLAERRIDEALTALDEGEHLAAEA 181 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~~l~~~ 181 (432)
.++...++|++|..+++++-.+....
T Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 10 NAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 35677999999999999887766544
No 59
>PRK11020 hypothetical protein; Provisional
Probab=27.05 E-value=2.4e+02 Score=23.79 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 014033 50 KEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNL 101 (432)
Q Consensus 50 ~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~l 101 (432)
.+|+++-..|-.+.+..+.-.++.=-+-|.+| .+||.+|+.++..|++.
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf---~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQF---EKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 46777777777777777776666655666666 58999999999999885
No 60
>PF14182 YgaB: YgaB-like protein
Probab=26.05 E-value=3.3e+02 Score=21.46 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 014033 50 KEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQAT 107 (432)
Q Consensus 50 ~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~ 107 (432)
++|..+.++|.+.. ....+|+..=-+ ..-..+-.||+.|+.++..+......|..
T Consensus 14 D~LL~LQsElERCq-eIE~eL~~l~~e--a~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTe 68 (79)
T PF14182_consen 14 DKLLFLQSELERCQ-EIEKELKELERE--AELHSIQEEISQMKKELKEIQRVFEKQTE 68 (79)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766 455555555433 45556678999999999999999988865
No 61
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=4.1e+02 Score=23.49 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=22.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014033 86 KEISDLEGELSSIRNLLSTQATLIHGLAEG 115 (432)
Q Consensus 86 kEIs~lE~Em~~L~~ll~~~~~~i~~L~~~ 115 (432)
.+|..|..+|..|...+++..+.+.+|...
T Consensus 20 ~qie~L~~~i~~l~~~~~e~~~~~~tl~~l 49 (145)
T COG1730 20 SQIESLQAQIAALNAAISELQTAIETLENL 49 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356668888888888888888877777664
No 62
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.99 E-value=4.5e+02 Score=22.71 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=28.4
Q ss_pred HHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014033 75 YANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAE 114 (432)
Q Consensus 75 y~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~ 114 (432)
.++|.+|...-..|..|...+..++.+|.+.-..+..|.+
T Consensus 76 qk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~ 115 (131)
T PF10158_consen 76 QKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778888887777777777777777777666655555544
No 63
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.88 E-value=4.6e+02 Score=22.78 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=55.0
Q ss_pred HHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHH
Q 014033 147 WSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRA 226 (432)
Q Consensus 147 wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~ 226 (432)
-..++...-+.++.+++|+++.+.+.++.+++..+..+=+ ...=..+...+...-.-+.++|.+.-- ......+.+
T Consensus 30 g~l~~l~~A~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld--~E~Ggeia~nL~~LY~y~~~rL~~ANl--~nd~~~i~e 105 (132)
T COG1516 30 GALKFLKRAKEAIEQEDIEEKNESIDKAIDIITELRASLD--YEKGGEIAQNLDALYDYMVRRLVQANL--KNDASKIDE 105 (132)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC--HhhcchHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHH
Confidence 4556677788899999999999999999999987654211 110123444555555555555554332 124466777
Q ss_pred HHHHHHhcCCc
Q 014033 227 AISALKKLGDG 237 (432)
Q Consensus 227 ~v~lL~rLg~~ 237 (432)
.+.+|..|-+.
T Consensus 106 V~~ll~~l~ea 116 (132)
T COG1516 106 VIGLLRELREA 116 (132)
T ss_pred HHHHHHHHHHH
Confidence 77766655444
No 64
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=24.60 E-value=1.2e+02 Score=23.46 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=29.9
Q ss_pred hhcCCCchHHHHhhchHhHHHHHHHHHHHHHHHHH
Q 014033 350 EARGLALCPVLIKLFRPSVEQALDANLKRIEESTA 384 (432)
Q Consensus 350 ~~~GLdl~~~L~~ll~~~ve~~l~~~~~~i~e~~~ 384 (432)
...|..+-.+...+|||-+.+=|+.|+-.++|.+.
T Consensus 29 ~~~~~TlE~lvremLRPmLkeWLD~nLP~lVErlV 63 (73)
T PF10691_consen 29 PSSGRTLEDLVREMLRPMLKEWLDENLPGLVERLV 63 (73)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34688999999999999999999999988876654
No 65
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=24.32 E-value=1.3e+02 Score=18.29 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=17.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHH
Q 014033 156 DVLLAERRIDEALTALDEGEHL 177 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~~ 177 (432)
++....+++++|...+.++-++
T Consensus 9 ~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 9 KIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 3566789999999999887654
No 66
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.24 E-value=1.3e+02 Score=18.11 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=15.0
Q ss_pred HHHHccCHHHHHHHHHHHHH
Q 014033 157 VLLAERRIDEALTALDEGEH 176 (432)
Q Consensus 157 v~Iaer~feeAv~ll~~~~~ 176 (432)
++...++|++|++.+.++-.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 10 AYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 46678999999999987543
No 67
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=23.24 E-value=2.7e+02 Score=25.78 Aligned_cols=35 Identities=20% Similarity=0.432 Sum_probs=27.9
Q ss_pred HHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHH
Q 014033 70 MRKSVYANYAAFIRTSKEISD-LEGELSSIRNLLST 104 (432)
Q Consensus 70 Lq~~Vy~NY~~FI~aSkEIs~-lE~Em~~L~~ll~~ 104 (432)
+-+.+|.||..||....+|+. +...+.++.+.+-+
T Consensus 3 vn~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~ 38 (226)
T KOG3067|consen 3 VNKSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLRE 38 (226)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999984 77777777776444
No 68
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.55 E-value=1.4e+02 Score=18.26 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=15.5
Q ss_pred HHHHHccCHHHHHHHHHHHHH
Q 014033 156 DVLLAERRIDEALTALDEGEH 176 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~ 176 (432)
..+...++|++|+..+.++-+
T Consensus 9 ~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 9 NAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHH
Confidence 356778999999999987643
No 69
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.02 E-value=1.4e+02 Score=17.75 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=18.2
Q ss_pred hHHHHHHccCHHHHHHHHHHHH
Q 014033 154 LLDVLLAERRIDEALTALDEGE 175 (432)
Q Consensus 154 ~Ldv~Iaer~feeAv~ll~~~~ 175 (432)
.+..+...+++++|++++.+-+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4677889999999999987644
No 70
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.37 E-value=1.3e+03 Score=26.65 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----cchhhhhccc
Q 014033 53 RQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVH-----IDSLKGSESF 127 (432)
Q Consensus 53 ~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~-----~~~l~~~~e~ 127 (432)
..++++|...-+-.+-.|=+-+-.-=.+|-.|-.+...|..+|.+=..-+-+.+..|..+-..++ +..+..++..
T Consensus 242 ~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n 321 (951)
T KOG2115|consen 242 SALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKN 321 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555665555555556666666666777777666665544433222222122222222222211 1222222222
Q ss_pred ccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHh--hhccCCCCHHHHHHHHHHHHHHHHH
Q 014033 128 ASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE--AKQTKTLDPAMLISLENTIIDRRQK 205 (432)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~--~~~~~~~~~~~~~~l~~~l~~r~~~ 205 (432)
..+ +++ ....+.-+..--..+..++++++|..|++++.-.+.+|+. ..+.++ +.-+...+.+....
T Consensus 322 ~~k--L~~-----kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~s-----frhL~~ql~el~~t 389 (951)
T KOG2115|consen 322 VEK--LLQ-----KLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKGSELLGLHS-----FRHLRSQLLELYKT 389 (951)
T ss_pred HHH--HHH-----HHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhcCchh-----HHhhHHHHHHHHHH
Confidence 111 110 1123445555667788999999999999999999999973 233333 44444444443333
Q ss_pred HHHHHHHHh
Q 014033 206 LADQLAEAA 214 (432)
Q Consensus 206 L~~~L~~~l 214 (432)
+-..+..++
T Consensus 390 I~~m~t~eF 398 (951)
T KOG2115|consen 390 IDKMLTREF 398 (951)
T ss_pred HHHHHHHHH
Confidence 333333333
No 71
>PF14922 FWWh: Protein of unknown function
Probab=21.34 E-value=2.6e+02 Score=25.09 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCchHHHHHHHH
Q 014033 204 QKLADQLAEAACQPSTRGAELRAAISALKKLGDGPRAHSLLLN 246 (432)
Q Consensus 204 ~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg~~~~A~~lfL~ 246 (432)
..+.+.|-+++. ..-|.++.+++ +..++.|++
T Consensus 75 ~~~q~~lf~Ria---------~~yv~l~~~~~--~~~kD~~~~ 106 (161)
T PF14922_consen 75 REIQDKLFNRIA---------DNYVKLFLNLP--SHYKDAFFK 106 (161)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhcC--chhHHHHHH
Confidence 345555555443 34677777776 556666666
No 72
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.34 E-value=6.4e+02 Score=26.12 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=58.9
Q ss_pred chhhHHhhhhhhHH----------HHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH-----------H
Q 014033 143 DLEKWSVEFPDLLD----------VLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTII-----------D 201 (432)
Q Consensus 143 ~~~~wl~elpd~Ld----------v~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~-----------~ 201 (432)
....|....++.|+ ++..+++|..|...|+++-+.+..-...+.........++..+. .
T Consensus 193 ~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 193 EDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE 272 (397)
T ss_pred cccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 34567777776665 67789999999999999988886322211111111222333322 2
Q ss_pred HHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHhcCCchHHHHHHHHH
Q 014033 202 RRQKLADQLAEAAC-QPSTRGAELRAAISALKKLGDGPRAHSLLLNA 247 (432)
Q Consensus 202 r~~~L~~~L~~~l~-~~~~~~~el~~~v~lL~rLg~~~~A~~lfL~~ 247 (432)
-...+..... .|. +|. ....|=|--..+.-+|+.+.|+..|.++
T Consensus 273 ~~~Ai~~c~k-vLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 273 YKEAIESCNK-VLELDPN-NVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHHHH-HHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 2222222211 122 222 2335555556777899999999999774
No 73
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=21.31 E-value=1.1e+02 Score=18.13 Aligned_cols=17 Identities=41% Similarity=0.358 Sum_probs=14.3
Q ss_pred HHHHHccCHHHHHHHHH
Q 014033 156 DVLLAERRIDEALTALD 172 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~ 172 (432)
++++..+++++|...++
T Consensus 9 ~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 9 RALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 57888999999998875
No 74
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.94 E-value=2e+02 Score=21.08 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014033 89 SDLEGELSSIRNLLSTQATLIHGLAE 114 (432)
Q Consensus 89 s~lE~Em~~L~~ll~~~~~~i~~L~~ 114 (432)
..+|++|..+..-+++.+.....+++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 75
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=20.93 E-value=1.6e+02 Score=21.88 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHhhh
Q 014033 156 DVLLAERRIDEALTALDEGEHLAAEAK 182 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~~l~~~~ 182 (432)
.++...++|++|++.++++-.+....+
T Consensus 13 ~~~~~~~~~~~A~~~~~~al~~~~~~~ 39 (78)
T PF13424_consen 13 RVYRELGRYDEALDYYEKALDIEEQLG 39 (78)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHC
Confidence 356679999999999999888855443
No 76
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=20.91 E-value=2.8e+02 Score=26.12 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=28.7
Q ss_pred ccCCCCCCHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHH
Q 014033 29 LFKSDKFDADVYVKSKC---SLNEKEIRQLCSYLLDLKRASAEEMRKS--VYANYAAFIRTSK 86 (432)
Q Consensus 29 ~~~~~~Fd~e~Yv~~~l---~~~~~~l~~~~~~L~~~~~~~~~~Lq~~--Vy~NY~~FI~aSk 86 (432)
-|++|+|+|=.+=-+-+ .++-+..+.+...+ -|+.| .|.++..|.+...
T Consensus 66 PFs~PdFs~P~l~~~~LPsa~~~~~~w~~l~D~~---------RL~~n~~AySal~~~L~~v~ 119 (214)
T PF06875_consen 66 PFSDPDFSPPRLQLSGLPSAAMDFDTWLSLSDEE---------RLKNNYYAYSALLEFLQLVM 119 (214)
T ss_pred CCCCCCCCCCcCCcCCCCCCcCChHHhccCChHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 48899999755333333 34434334333322 24444 7888889988774
No 77
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=20.38 E-value=2.3e+02 Score=21.53 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014033 86 KEISDLEGELSSIRNLLSTQATLIHGLAEG 115 (432)
Q Consensus 86 kEIs~lE~Em~~L~~ll~~~~~~i~~L~~~ 115 (432)
.+|..|+.++..|+..-++.+.-+++|++.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd 31 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED 31 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467889999999999999999999998886
No 78
>PF13041 PPR_2: PPR repeat family
Probab=20.30 E-value=1.4e+02 Score=20.31 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.7
Q ss_pred hHHHHHHccCHHHHHHHHHHHH
Q 014033 154 LLDVLLAERRIDEALTALDEGE 175 (432)
Q Consensus 154 ~Ldv~Iaer~feeAv~ll~~~~ 175 (432)
.++.+...+++++|.+++.+-+
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHH
Confidence 5788899999999999997644
Done!