Query 014033
Match_columns 432
No_of_seqs 169 out of 265
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 04:17:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014033.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014033hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 100.0 2.1E-48 7.2E-53 368.6 23.4 220 142-370 12-233 (235)
2 2crb_A Nuclear receptor bindin 79.0 8.7 0.0003 30.1 7.6 44 154-198 21-64 (97)
3 2fzt_A Hypothetical protein TM 66.3 37 0.0013 25.2 7.9 55 148-208 4-58 (79)
4 3lpz_A GET4 (YOR164C homolog); 55.8 1.5E+02 0.0051 28.6 21.1 234 148-394 12-283 (336)
5 2wpv_A GET4, UPF0363 protein Y 51.8 1.6E+02 0.0056 27.9 14.1 26 157-182 42-67 (312)
6 2kjg_A Archaeal protein SSO690 51.6 19 0.00064 27.8 4.3 50 46-96 18-70 (99)
7 4a5x_A MITD1, MIT domain-conta 50.2 74 0.0025 24.2 7.8 41 160-201 28-68 (86)
8 2cpt_A SKD1 protein, vacuolar 47.8 75 0.0026 25.7 7.9 54 161-214 31-87 (117)
9 3sjb_C Golgi to ER traffic pro 44.9 39 0.0013 26.4 5.3 69 39-110 10-80 (93)
10 1wfd_A Hypothetical protein 15 42.2 1.1E+02 0.0039 23.4 7.9 49 161-210 28-79 (93)
11 2v6x_A Vacuolar protein sortin 41.1 1.1E+02 0.0038 22.9 7.6 40 161-201 26-65 (85)
12 2hr2_A Hypothetical protein; a 36.5 77 0.0026 27.0 6.6 61 143-207 97-157 (159)
13 3vkg_A Dynein heavy chain, cyt 36.5 7E+02 0.024 31.7 17.0 31 151-181 2010-2040(3245)
14 3zsu_A TLL2057 protein, cyanoq 35.9 1.9E+02 0.0063 23.9 9.0 101 50-180 21-121 (130)
15 1elw_A TPR1-domain of HOP; HOP 35.5 1.1E+02 0.0039 22.0 6.9 87 153-248 9-99 (118)
16 3oak_C Transcription elongatio 35.5 42 0.0014 20.6 3.2 21 279-299 3-23 (31)
17 2nps_B Syntaxin 13, vesicle-as 31.4 59 0.002 23.7 4.3 28 85-112 5-32 (71)
18 2jvw_A Uncharacterized protein 30.0 30 0.001 26.4 2.4 28 290-317 39-71 (88)
19 3ls0_A SLL1638 protein, PSBQ; 29.9 1.7E+02 0.0058 24.3 7.2 100 50-180 23-124 (133)
20 1gl2_B Syntaxin 7; membrane pr 29.8 67 0.0023 22.9 4.3 27 85-111 8-34 (65)
21 2v71_A Nuclear distribution pr 28.2 3.1E+02 0.011 24.1 9.6 64 46-114 6-70 (189)
22 1jth_B Syntaxin 1A; coiled-coi 27.4 73 0.0025 23.5 4.3 28 84-111 8-35 (77)
23 2js5_A Uncharacterized protein 27.1 59 0.002 24.0 3.5 31 85-115 2-32 (71)
24 4dzn_A Coiled-coil peptide CC- 26.9 1.1E+02 0.0036 18.3 4.5 28 87-114 3-30 (33)
25 4gco_A Protein STI-1; structur 26.6 1.5E+02 0.005 23.1 6.4 84 156-248 21-108 (126)
26 1g6u_A Domain swapped dimer; d 26.1 1.2E+02 0.004 19.6 4.3 28 85-112 19-46 (48)
27 3upv_A Heat shock protein STI1 25.7 1.6E+02 0.0055 22.1 6.4 87 156-247 12-98 (126)
28 1n7s_B Syntaxin 1A; neuronal s 25.5 1.5E+02 0.0052 21.1 5.6 29 83-111 9-37 (68)
29 3b5n_B Protein SSO1; snare com 25.5 1.5E+02 0.0052 21.2 5.6 29 83-111 7-35 (69)
30 3swh_A MUNC13-1, protein UNC-1 25.4 46 0.0016 32.3 3.5 62 359-429 6-67 (341)
31 2dc3_A Cytoglobin; myoglobin, 25.1 3.3E+02 0.011 23.4 11.5 40 364-403 146-185 (193)
32 3vlc_E Golgi to ER traffic pro 24.7 38 0.0013 26.5 2.2 70 38-110 16-87 (94)
33 3kpe_A Fusion glycoprotein F0; 23.6 1E+02 0.0034 21.3 3.9 27 90-116 1-27 (51)
34 1sfc_B Protein (syntaxin 1A), 23.6 94 0.0032 23.3 4.3 29 83-111 18-46 (83)
35 2vyi_A SGTA protein; chaperone 22.0 2.3E+02 0.0079 20.5 6.8 90 151-249 15-108 (131)
36 3sz7_A HSC70 cochaperone (SGT) 21.6 2E+02 0.0068 22.9 6.5 27 150-176 13-39 (164)
37 2kck_A TPR repeat; tetratricop 21.1 2.2E+02 0.0075 20.1 6.2 22 155-176 13-34 (112)
38 2w2u_A Hypothetical P60 katani 20.8 2.1E+02 0.007 21.5 5.7 40 161-202 32-72 (83)
39 3abh_A Pacsin2, protein kinase 20.5 4.8E+02 0.016 24.0 9.7 63 50-112 91-162 (312)
40 2v6y_A AAA family ATPase, P60 20.3 2.3E+02 0.0079 21.1 5.9 40 161-202 24-64 (83)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=100.00 E-value=2.1e-48 Score=368.61 Aligned_cols=220 Identities=19% Similarity=0.234 Sum_probs=198.2
Q ss_pred CchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 014033 142 SDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTK-TLDPAMLISLENTIIDRRQKLADQLAEAACQPSTR 220 (432)
Q Consensus 142 ~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~-~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~ 220 (432)
.+.++|+.++||+||||||+|+||+||++++++++.+...+... +.++.....|+.++++|+..|+++|.+++.+ +.+
T Consensus 12 ~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~ 90 (235)
T 2d2s_A 12 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNE 90 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSS
T ss_pred chhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 36789999999999999999999999999999999998876422 1234457889999999999999999999976 778
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccccccchHHHhHHHHHHHHHHHHHHHHHhcCC-CCcc
Q 014033 221 GAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSAIAQAACDSLAIFGK-ETAY 299 (432)
Q Consensus 221 ~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs~I~~t~~~~~~~F~~-~~~~ 299 (432)
+.+++++|++|+|||++++|+++||++|+.+|+++++++..+| |++.||.+||.+||+.|++|+++|.++|++ +|.|
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~g--d~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~ 168 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVD--NPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKI 168 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CC--SHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 8999999999999999999999999999999999999998887 568999999999999999999999999998 6799
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHhhhhhcCCCchHHHHhhchHhHHH
Q 014033 300 TSELVMWATRQTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLIKLFRPSVEQ 370 (432)
Q Consensus 300 ~S~lv~Wa~~ei~~f~~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c~~L~~~GLdl~~~L~~ll~~~ve~ 370 (432)
+|+||.||++|++.|+.+|+||+++ . +++++ +||+++++||++|+++||||+|+|+++|+|++++
T Consensus 169 ~S~lV~Wa~~eve~f~~l~~rqv~~-~---~~l~~--ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~ 233 (235)
T 2d2s_A 169 SSILVDWCSDEVDNHFKLIDKQLLN-D---EMLSP--GSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-------CCH--HHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccC-C---ccHHH--HHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence 9999999999999999999999988 3 56764 9999999999999999999999999999999875
No 2
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=78.98 E-value=8.7 Score=30.06 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=32.3
Q ss_pred hHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHH
Q 014033 154 LLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENT 198 (432)
Q Consensus 154 ~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~ 198 (432)
.=+.++..++||+|+++..++-.++.+.-+... ++.+..+|+.+
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmkltq-s~qa~~SLqLQ 64 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMKLTE-SEQAHLSLELQ 64 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHH
Confidence 346789999999999999999999987654432 44445555433
No 3
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=66.25 E-value=37 Score=25.23 Aligned_cols=55 Identities=13% Similarity=0.123 Sum_probs=40.1
Q ss_pred HhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHH
Q 014033 148 SVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLAD 208 (432)
Q Consensus 148 l~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~ 208 (432)
+.++-..+|.||.+.+|+.-..++.+-++++...+ ....+.|..+=..|...+..
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~------~e~l~~i~EkDk~R~~~Ik~ 58 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLP------KDKLSEILEKDRKRLEIIEK 58 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCc------HHHHHHHHHHHHHHHHHHHH
Confidence 56777889999999999999999999999987542 22355565555555444443
No 4
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.76 E-value=1.5e+02 Score=28.60 Aligned_cols=234 Identities=16% Similarity=0.169 Sum_probs=117.3
Q ss_pred HhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHhcCC--
Q 014033 148 SVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLI--------SLENTIIDRRQKLADQLAEAACQP-- 217 (432)
Q Consensus 148 l~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~--------~l~~~l~~r~~~L~~~L~~~l~~~-- 217 (432)
+....+.|+..|++++|+|-.+.....+-+...+-....-+++ +. .++.+=..-...|+-.|.+.+...
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eA-idLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~ 90 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAA-VDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQ 90 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 4455566666666666654444444444444444322221111 11 111111112233444444444432
Q ss_pred CCChHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhcccccccccccccchHHHhHHHHHHH--HHHHHHHHHHhcCC
Q 014033 218 STRGAELRAAISALKKLGDGPRAHSLLLNAHYQRYQYSMQSLRPSSTSYGGAYTAALSQLVFSA--IAQAACDSLAIFGK 295 (432)
Q Consensus 218 ~~~~~el~~~v~lL~rLg~~~~A~~lfL~~rs~~l~~~l~~l~~~g~~~~~~Yi~~ls~~~Fs~--I~~t~~~~~~~F~~ 295 (432)
........+.+.++..+...+-.+..|++..=.|=.+. .. .+.|++ ..=.-++..++.. ... ++-+. +.++
T Consensus 91 ~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~-g~-~~~Gdp---~LH~~ig~~~~~e~~~~~-Ae~H~-ilg~ 163 (336)
T 3lpz_A 91 RVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF-GD-YPAGDP---ELHHVVGTLYVEEGEFEA-AEKHL-VLGT 163 (336)
T ss_dssp CCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH-SS-CTTCCH---HHHHHHHHHHHHTTCHHH-HHHHH-TTSC
T ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc-CC-CCCCCH---HHHHHHHHHHHccCCHHH-HHHHH-HhcC
Confidence 23345666777777777655556888888887776651 11 234543 2223344444432 222 22222 4555
Q ss_pred CC---cchhhhHHHHHH----HHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHhhhhhcCC--------------
Q 014033 296 ET---AYTSELVMWATR----QTEAFAHLVKRHALASSAAAGGLRAAAECVQIALGHCSLLEARGL-------------- 354 (432)
Q Consensus 296 ~~---~~~S~lv~Wa~~----ei~~f~~l~~r~v~~~~~~~~~l~~~~ecv~~~~~~c~~L~~~GL-------------- 354 (432)
++ .|+.-++.|... +.+.|+..--=+++.. ++++.+..+++.-..+... ...+|
T Consensus 164 ~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l----~n~~~A~~~~~~f~~~l~~-~~p~L~~q~~~~~~~~~~~ 238 (336)
T 3lpz_A 164 KESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLV----ANVRAANTAYRIFTSALVE-DNKGLTVQNIGSQSAELRI 238 (336)
T ss_dssp TTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHH-HCTTSCCEESCC--CCCEE
T ss_pred CchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHhh-cCCCccccccccCCccccc
Confidence 42 578899999874 6777777655555444 4777777777765555321 11222
Q ss_pred -CchHHH--HhhchHhHHHHHHHHHHHHHHHHHHHHhcCC--cee
Q 014033 355 -ALCPVL--IKLFRPSVEQALDANLKRIEESTAAMAAADD--WVL 394 (432)
Q Consensus 355 -dl~~~L--~~ll~~~ve~~l~~~~~~i~e~~~~~~~~d~--W~~ 394 (432)
+..|+| ..+|-..++.---..+..+++.-+..+..|. |..
T Consensus 239 ~p~~PLLNFl~lLllt~q~~~~~lF~~L~~~Y~~~l~rd~~~~~~ 283 (336)
T 3lpz_A 239 FPSLPLLNFISMLLLSVQKGSPDLFRQLKSKYEANLNELNGIWDT 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHSCCHHHHHHHHHHTHHHHHTTTTTTHH
T ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 123332 2333333333323456667777777666663 654
No 5
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=51.77 E-value=1.6e+02 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=18.3
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHhhh
Q 014033 157 VLLAERRIDEALTALDEGEHLAAEAK 182 (432)
Q Consensus 157 v~Iaer~feeAv~ll~~~~~~l~~~~ 182 (432)
..+++++|++|++++-.+-..+-+.+
T Consensus 42 Ry~~~~~~~eAidlL~~ga~~ll~~~ 67 (312)
T 2wpv_A 42 RYVRSKSYEHAIELISQGALSFLKAK 67 (312)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHCC
Confidence 34556788888888887776665543
No 6
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=51.60 E-value=19 Score=27.77 Aligned_cols=50 Identities=26% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHhHHHHHHHHH
Q 014033 46 SLNEKEIRQLCSYLLDLKRASAEEMRKS---VYANYAAFIRTSKEISDLEGELS 96 (432)
Q Consensus 46 ~~~~~~l~~~~~~L~~~~~~~~~~Lq~~---Vy~NY~~FI~aSkEIs~lE~Em~ 96 (432)
..+.+++++.-+++...-+.. ..++.. ||.||.+|++-.|+.=+|=++..
T Consensus 18 kvd~~~v~~IL~eiE~~~rks-nni~tS~If~Yanh~~~V~knk~fy~li~~Il 70 (99)
T 2kjg_A 18 KVNFNLVMQILDEIELDLRGS-DNIKTSIIYVYSSHLDEIRKNKEFYDMIAEIL 70 (99)
T ss_dssp CSCHHHHHHHHHHHHHHHHHS-SCHHHHHHHHHHHTHHHHHHTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677788888877776555332 233443 89999999999998877655443
No 7
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=50.15 E-value=74 Score=24.19 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=26.9
Q ss_pred HccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q 014033 160 AERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (432)
Q Consensus 160 aer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 201 (432)
..++|++|+.+|..|=..+...-.... ++.....|+.++.+
T Consensus 28 ~~g~y~eAl~lY~~Aie~ll~alk~e~-d~~~k~~lr~K~~e 68 (86)
T 4a5x_A 28 SESRYPQALVCYQEGIDLLLQVLKGTK-DNTKRCNLREKISK 68 (86)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHH
Confidence 489999999999998877765433221 33334456656554
No 8
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=47.85 E-value=75 Score=25.68 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=33.2
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID---RRQKLADQLAEAA 214 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---r~~~L~~~L~~~l 214 (432)
.++|++|+.+|..+=.++...-.....++.....|+.++.+ |...|...|...-
T Consensus 31 ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 58999999999998888765533221133323445555554 5555665555444
No 9
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=44.93 E-value=39 Score=26.35 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=45.5
Q ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 39 VYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110 (432)
Q Consensus 39 ~Yv~~~l--~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~ 110 (432)
.++..++ +....+.+++..++.++++.... .+.-.+|.++-+.-+-+.+|..|+..+.+.|...++...
T Consensus 10 ~wi~~l~~~s~~a~~~~~lk~E~~~lk~E~~s---tSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 10 KWISKFAPGNELSKKYLAKVKERHELKEFNNS---ISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHTT---SCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCcHhHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 34456667777777655533221 346789999999999999999999999999888776554
No 10
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=42.22 E-value=1.1e+02 Score=23.38 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=29.5
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH---HHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID---RRQKLADQL 210 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---r~~~L~~~L 210 (432)
.++|++|+.++..+=..+...-.... ++..-..|+.++.+ |...|...|
T Consensus 28 ~g~y~eAl~~Y~~Aie~l~~alk~e~-~~~~k~~l~~K~~eYl~RAE~LK~~l 79 (93)
T 1wfd_A 28 ESRYQQALVCYQEGIDMLLQVLKGTK-ESSKRCVLRTKISGYMDRAENIKKYL 79 (93)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999998888765532221 23323445555554 444444443
No 11
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=41.10 E-value=1.1e+02 Score=22.85 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID 201 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~ 201 (432)
.++|++|+.+|..+=..+...-.... ++..-..|+.++.+
T Consensus 26 ~g~y~eAl~~Y~~aie~l~~a~k~e~-~~~~k~~l~~k~~e 65 (85)
T 2v6x_A 26 ATQYEEAYTAYYNGLDYLMLALKYEK-NPKSKDLIRAKFTE 65 (85)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 59999999999998887755432221 23323445555554
No 12
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=36.51 E-value=77 Score=27.04 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=43.1
Q ss_pred chhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHH
Q 014033 143 DLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLA 207 (432)
Q Consensus 143 ~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~ 207 (432)
....|+.-+-..=..+...++|++|+..+.++-.+-......-. .+..++.++.+++.+|.
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~----~~~~~~~~~~~~~~k~~ 157 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP----GKERMMEVAIDRIAQLG 157 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT----THHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHHHHHHHhc
Confidence 34445544455567788899999999999998887765433221 26778888888877764
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=36.50 E-value=7e+02 Score=31.67 Aligned_cols=31 Identities=19% Similarity=-0.062 Sum_probs=18.2
Q ss_pred hhhhHHHHHHccCHHHHHHHHHHHHHHHHhh
Q 014033 151 FPDLLDVLLAERRIDEALTALDEGEHLAAEA 181 (432)
Q Consensus 151 lpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~ 181 (432)
.|-+-...-++.+.++|-+-+.+++..++..
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~l 2040 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITAL 2040 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666667766666666666543
No 14
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=35.86 E-value=1.9e+02 Score=23.94 Aligned_cols=101 Identities=14% Similarity=0.039 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhccccc
Q 014033 50 KEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESFAS 129 (432)
Q Consensus 50 ~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~~~l~~~~e~~~ 129 (432)
..|+..-..+...++++ .+|+..|-+.+=.|++. .+-+-|.+|+..|.. |+.. |.
T Consensus 21 ~~iq~y~~~i~~~r~Rl-~eL~~lI~~~~W~~~Rn-----~IhGPlg~lr~~m~~-------l~~~-----Ll------- 75 (130)
T 3zsu_A 21 TRIQDYLRDIEKNAERF-ADLEVSVAKGDWQEARN-----IMRGPLGEMLMDMRA-------LNRN-----LL------- 75 (130)
T ss_dssp HHHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHH-----HHHTHHHHHHHHHHH-------HHHT-----SC-------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHH-----HHhchHHHHHHHHHH-------HHHh-----cC-------
Confidence 34555556666666666 57888888887777763 244555555544222 2221 10
Q ss_pred ccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHh
Q 014033 130 KNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE 180 (432)
Q Consensus 130 ~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~ 180 (432)
| -+..+..+.-+-+++-.++||..-.+++...|...|.++-.-+..
T Consensus 76 p-----~dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfda 121 (130)
T 3zsu_A 76 A-----KDQPTPTALTRALTDDFLKIDQGADLDSVTVAQEGFREAEADFKA 121 (130)
T ss_dssp G-----GGSHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred H-----hhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 0 011112244567888899999999999999999998876655543
No 15
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=35.55 E-value=1.1e+02 Score=21.97 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=43.3
Q ss_pred hhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhc-CCCCChHHHHHHH
Q 014033 153 DLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID---RRQKLADQLAEAAC-QPSTRGAELRAAI 228 (432)
Q Consensus 153 d~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---r~~~L~~~L~~~l~-~~~~~~~el~~~v 228 (432)
..-..+...++|++|+..+.++-... +. ++.....+ ..+.. ....-...+...+. .|. .........
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~~-a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 79 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD---PH----NHVLYSNR-SAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC---CC----cHHHHHHH-HHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34456778999999999998764432 11 11111111 11111 11111112222222 222 233444445
Q ss_pred HHHHhcCCchHHHHHHHHHH
Q 014033 229 SALKKLGDGPRAHSLLLNAH 248 (432)
Q Consensus 229 ~lL~rLg~~~~A~~lfL~~r 248 (432)
..+.++|+.++|...|.++.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 66778999998887776543
No 16
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=35.46 E-value=42 Score=20.60 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhcCCCCcc
Q 014033 279 FSAIAQAACDSLAIFGKETAY 299 (432)
Q Consensus 279 Fs~I~~t~~~~~~~F~~~~~~ 299 (432)
|+.+..+..+..++||+...|
T Consensus 3 ~~~~~~aledm~eiFGdG~dY 23 (31)
T 3oak_C 3 FTHMSDKIDEMYDIFGDGHDY 23 (31)
T ss_dssp HHHHHHHHHHHHHHHCCSCTT
T ss_pred chhHHHHHHHHHHHhCCCchh
Confidence 788999999999999997544
No 17
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=31.45 E-value=59 Score=23.67 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=22.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014033 85 SKEISDLEGELSSIRNLLSTQATLIHGL 112 (432)
Q Consensus 85 SkEIs~lE~Em~~L~~ll~~~~~~i~~L 112 (432)
.++|..+|..|.+|..++.+...+|..=
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQ 32 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQ 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788999999999999888877776643
No 18
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=29.95 E-value=30 Score=26.44 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=23.1
Q ss_pred HHhcCCCCcchhhhH-----HHHHHHHHHHHHH
Q 014033 290 LAIFGKETAYTSELV-----MWATRQTEAFAHL 317 (432)
Q Consensus 290 ~~~F~~~~~~~S~lv-----~Wa~~ei~~f~~l 317 (432)
..||..+|+..|.+- .||++.+|.|---
T Consensus 39 I~CF~~~PSikSSLKFLRKTpWAR~KVE~lYL~ 71 (88)
T 2jvw_A 39 INCFKKDPSIKSSLKFLRKTDWARERVENIYLK 71 (88)
T ss_dssp SSSTTSSCCHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred cccCCCCCchHHHHHHHhcCHhHHHHHHHHHHH
Confidence 378999998888876 8999999987543
No 19
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=29.88 E-value=1.7e+02 Score=24.28 Aligned_cols=100 Identities=10% Similarity=0.073 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhccc
Q 014033 50 KEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRT--SKEISDLEGELSSIRNLLSTQATLIHGLAEGVHIDSLKGSESF 127 (432)
Q Consensus 50 ~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~a--SkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~~~~~~l~~~~e~ 127 (432)
..|+..-..+...++++.+.|+..|-+.+=.|++. -.=+..|..+|..|...| ...
T Consensus 23 ~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~L----------lp~------------ 80 (133)
T 3ls0_A 23 AQLQVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSL----------LPK------------ 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHS----------CHH------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhc----------Chh------------
Confidence 34555556667777777444888888877777763 222223444444433321 000
Q ss_pred ccccccccccCCCCCchhhHHhhhhhhHHHHHHccCHHHHHHHHHHHHHHHHh
Q 014033 128 ASKNDLLNLENKEPSDLEKWSVEFPDLLDVLLAERRIDEALTALDEGEHLAAE 180 (432)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~~wl~elpd~Ldv~Iaer~feeAv~ll~~~~~~l~~ 180 (432)
+..+..+.-+-+++-.++||..-.+++...|...|.++-.-+..
T Consensus 81 ---------dqk~A~~lak~l~~~L~~LD~AA~~~n~~~a~k~Y~~a~adfda 124 (133)
T 3ls0_A 81 ---------DQDKAKTLAKEVFGHLERLDAAAKDRNGSQAKIQYQEALADFDS 124 (133)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 00001234456788889999999999999999888876555443
No 20
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=29.84 E-value=67 Score=22.95 Aligned_cols=27 Identities=22% Similarity=0.474 Sum_probs=20.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 85 SKEISDLEGELSSIRNLLSTQATLIHG 111 (432)
Q Consensus 85 SkEIs~lE~Em~~L~~ll~~~~~~i~~ 111 (432)
.++|.++|..+.+|..++.+...+|..
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~e 34 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHE 34 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888888777766654
No 21
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.18 E-value=3.1e+02 Score=24.10 Aligned_cols=64 Identities=16% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 014033 46 SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISD-LEGELSSIRNLLSTQATLIHGLAE 114 (432)
Q Consensus 46 ~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~-lE~Em~~L~~ll~~~~~~i~~L~~ 114 (432)
....+++..++......+ ..-..+-..|+.|..-|+|+.. ||.++.++.+-.......+..|..
T Consensus 6 ~s~~ee~~ywk~~~~~~~-----q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 6 SSLKEETAYWKELSMKYK-----QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp SSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 22
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=27.44 E-value=73 Score=23.50 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 84 TSKEISDLEGELSSIRNLLSTQATLIHG 111 (432)
Q Consensus 84 aSkEIs~lE~Em~~L~~ll~~~~~~i~~ 111 (432)
-.+||.++|..|.+|..++.+...+|..
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~e 35 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVES 35 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999998888888777666654
No 23
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=27.09 E-value=59 Score=24.00 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014033 85 SKEISDLEGELSSIRNLLSTQATLIHGLAEG 115 (432)
Q Consensus 85 SkEIs~lE~Em~~L~~ll~~~~~~i~~L~~~ 115 (432)
|.+|..|+.++..|+..-++.+.-+++|+++
T Consensus 2 tedi~eLkkevkKL~~~A~q~kmdLHDLaEd 32 (71)
T 2js5_A 2 SEGAEELKAKLKKLNAQATALKMDLHDLAED 32 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 4688899999999999999999999999886
No 24
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.87 E-value=1.1e+02 Score=18.34 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 014033 87 EISDLEGELSSIRNLLSTQATLIHGLAE 114 (432)
Q Consensus 87 EIs~lE~Em~~L~~ll~~~~~~i~~L~~ 114 (432)
||..+..|+..|++-+...+-.|..|.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5556666666666655555555555544
No 25
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=26.63 E-value=1.5e+02 Score=23.07 Aligned_cols=84 Identities=7% Similarity=0.042 Sum_probs=41.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHhc-CCCCChHHHHHHHHHH
Q 014033 156 DVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKL---ADQLAEAAC-QPSTRGAELRAAISAL 231 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L---~~~L~~~l~-~~~~~~~el~~~v~lL 231 (432)
..+...++|++|++.+.++=+.- |. ++..+..+ ..+-...... ...+...+. +|. .......--..+
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~------p~-~~~~~~~~-~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD------PE-NAILYSNR-AACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC------TT-CHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CC-CHHHHHHH-hhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 46788999999999998754321 11 11111111 1111111111 111112222 232 233334444567
Q ss_pred HhcCCchHHHHHHHHHH
Q 014033 232 KKLGDGPRAHSLLLNAH 248 (432)
Q Consensus 232 ~rLg~~~~A~~lfL~~r 248 (432)
.++|+.++|...|-++-
T Consensus 92 ~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 92 VAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78999999988776643
No 26
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.12 E-value=1.2e+02 Score=19.63 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=20.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014033 85 SKEISDLEGELSSIRNLLSTQATLIHGL 112 (432)
Q Consensus 85 SkEIs~lE~Em~~L~~ll~~~~~~i~~L 112 (432)
-+|...+|+|+..|..-|...+..++.|
T Consensus 19 peelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577778888888888877776666654
No 27
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.69 E-value=1.6e+02 Score=22.14 Aligned_cols=87 Identities=11% Similarity=-0.061 Sum_probs=0.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcC
Q 014033 156 DVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIIDRRQKLADQLAEAACQPSTRGAELRAAISALKKLG 235 (432)
Q Consensus 156 dv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~r~~~L~~~L~~~l~~~~~~~~el~~~v~lL~rLg 235 (432)
..+...++|++|+..+.++-..-......-. .....-.-..+...=...+...+............--..+.++|
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-----NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-----HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Q ss_pred CchHHHHHHHHH
Q 014033 236 DGPRAHSLLLNA 247 (432)
Q Consensus 236 ~~~~A~~lfL~~ 247 (432)
+.++|...|-++
T Consensus 87 ~~~~A~~~~~~a 98 (126)
T 3upv_A 87 EYASALETLDAA 98 (126)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
No 28
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=25.49 E-value=1.5e+02 Score=21.15 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=22.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 83 RTSKEISDLEGELSSIRNLLSTQATLIHG 111 (432)
Q Consensus 83 ~aSkEIs~lE~Em~~L~~ll~~~~~~i~~ 111 (432)
.-.++|..+|..|.+|..++.+...+|..
T Consensus 9 eR~~ei~~Ie~~i~eL~~iF~dla~lV~e 37 (68)
T 1n7s_B 9 TRHSEIIKLENSIRELHDMFMDMAMLVES 37 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888887777666654
No 29
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=25.46 E-value=1.5e+02 Score=21.25 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 83 RTSKEISDLEGELSSIRNLLSTQATLIHG 111 (432)
Q Consensus 83 ~aSkEIs~lE~Em~~L~~ll~~~~~~i~~ 111 (432)
.-.++|..+|..|.+|..++.+...+|..
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~e 35 (69)
T 3b5n_B 7 ARHQELLKLEKSMAELTQLFNDMEELVIE 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888777666654
No 30
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=25.36 E-value=46 Score=32.28 Aligned_cols=62 Identities=15% Similarity=-0.062 Sum_probs=45.8
Q ss_pred HHHhhchHhHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCCcccccccccccccchhhHHHHHHHHHhhc
Q 014033 359 VLIKLFRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQASSMALQHRLTTSAHRFNLMVQVKTM 429 (432)
Q Consensus 359 ~L~~ll~~~ve~~l~~~~~~i~e~~~~~~~~d~W~~~~~~~~~~~~~~~~~~~~lt~s~~~f~~~~q~~~~ 429 (432)
-+...|.|.|.+=++....++.+-|...+..|+|.|..+.+ ...+=++|.--..++++++.+
T Consensus 6 ~~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~---------~~~~hSsSvvDif~~~~Q~~~ 67 (341)
T 3swh_A 6 EYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTS---------EHALFSCSVVDVFSQLNQSFE 67 (341)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS---------SSCCSCTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc---------cCccccchHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999986521 223556666666666665543
No 31
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=25.10 E-value=3.3e+02 Score=23.43 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=32.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHhcCCceecCCCCCccc
Q 014033 364 FRPSVEQALDANLKRIEESTAAMAAADDWVLTYPPMGTRQ 403 (432)
Q Consensus 364 l~~~ve~~l~~~~~~i~e~~~~~~~~d~W~~~~~~~~~~~ 403 (432)
+-|.++.|-......+.+.+.....+..|...++.+.-|.
T Consensus 146 ~t~e~~~AW~k~~~~va~~l~~~y~~~~~~~~~~~~~~~~ 185 (193)
T 2dc3_A 146 FPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNATTPP 185 (193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccCCC
Confidence 5567888888888899999999999999999766555444
No 32
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=24.67 E-value=38 Score=26.48 Aligned_cols=70 Identities=13% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 38 DVYVKSKC--SLNEKEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRTSKEISDLEGELSSIRNLLSTQATLIH 110 (432)
Q Consensus 38 e~Yv~~~l--~~~~~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~aSkEIs~lE~Em~~L~~ll~~~~~~i~ 110 (432)
+.|+.++. +....+.+++..++.+++++... .+...+|.++-..-+-+.+|..|+..+.+.|...++.+.
T Consensus 16 ~~~~~~v~p~s~~~~~~~~lk~E~~~lk~E~~s---tSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd 87 (94)
T 3vlc_E 16 EKWISKFAPGNELSKKYLAKVKERHELKEFNNS---ISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 87 (94)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHHHHTT---SCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHT
T ss_pred HHHHHHhCcccHhHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555 55667778888888766643322 346789999999999999999999999888776665443
No 33
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.61 E-value=1e+02 Score=21.25 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014033 90 DLEGELSSIRNLLSTQATLIHGLAEGV 116 (432)
Q Consensus 90 ~lE~Em~~L~~ll~~~~~~i~~L~~~~ 116 (432)
.||+++..|++-+.+.-..+.+|+++.
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~ 27 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGV 27 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999998885
No 34
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=23.58 E-value=94 Score=23.32 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=21.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014033 83 RTSKEISDLEGELSSIRNLLSTQATLIHG 111 (432)
Q Consensus 83 ~aSkEIs~lE~Em~~L~~ll~~~~~~i~~ 111 (432)
.-.++|.++|..|.+|..++.+...+|..
T Consensus 18 eR~~ei~~ie~~i~eL~~iF~dla~lV~e 46 (83)
T 1sfc_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVES 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888887776666654
No 35
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=21.96 E-value=2.3e+02 Score=20.53 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=44.7
Q ss_pred hhhhHHHHHHccCHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhc-CCCCChHHHHH
Q 014033 151 FPDLLDVLLAERRIDEALTALDEGEHLAAEAKQTKTLDPAMLISLENTIID---RRQKLADQLAEAAC-QPSTRGAELRA 226 (432)
Q Consensus 151 lpd~Ldv~Iaer~feeAv~ll~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~---r~~~L~~~L~~~l~-~~~~~~~el~~ 226 (432)
.-..-..+...++|++|+..+.++-... +. ++.....+ ..+-. +...-...+...+. .|. .......
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~~-a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 85 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN---PA----NAVYFCNR-AAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TT----CHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC---CC----CHHHHHHH-HHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHH
Confidence 3344567778999999999988765431 11 11111111 11110 01111111222222 222 2334444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 014033 227 AISALKKLGDGPRAHSLLLNAHY 249 (432)
Q Consensus 227 ~v~lL~rLg~~~~A~~lfL~~rs 249 (432)
....+.++|+.++|...|-++..
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 45567789999988887766543
No 36
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=21.57 E-value=2e+02 Score=22.93 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHccCHHHHHHHHHHHHH
Q 014033 150 EFPDLLDVLLAERRIDEALTALDEGEH 176 (432)
Q Consensus 150 elpd~Ldv~Iaer~feeAv~ll~~~~~ 176 (432)
.+-..=..+...++|++|++.+.++-.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~ 39 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALS 39 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334455678889999999999987643
No 37
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=21.13 E-value=2.2e+02 Score=20.06 Aligned_cols=22 Identities=5% Similarity=0.039 Sum_probs=17.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHH
Q 014033 155 LDVLLAERRIDEALTALDEGEH 176 (432)
Q Consensus 155 Ldv~Iaer~feeAv~ll~~~~~ 176 (432)
-..+...++|++|+..+.++-.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~ 34 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQ 34 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3456778999999999987654
No 38
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=20.81 E-value=2.1e+02 Score=21.47 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.0
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhc-cCCCCHHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQ-TKTLDPAMLISLENTIIDR 202 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~-~~~~~~~~~~~l~~~l~~r 202 (432)
.++|++|+.+|..|=..+..+-. .++ +..-..|+.++.+-
T Consensus 32 ~g~y~eAl~lY~~aie~l~~alk~e~d--~~~k~~ir~K~~eY 72 (83)
T 2w2u_A 32 EGNAEEAITNYKKAIEVLAQLVSLYRD--GSTAAIYEQMINEY 72 (83)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSTT--SSTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHH
Confidence 89999999999998888765421 121 11144566666654
No 39
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=20.45 E-value=4.8e+02 Score=23.96 Aligned_cols=63 Identities=6% Similarity=0.087 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014033 50 KEIRQLCSYLLDLKRASAEEMRKSVYANYAAFIRT---------SKEISDLEGELSSIRNLLSTQATLIHGL 112 (432)
Q Consensus 50 ~~l~~~~~~L~~~~~~~~~~Lq~~Vy~NY~~FI~a---------SkEIs~lE~Em~~L~~ll~~~~~~i~~L 112 (432)
..++..-..+...+...++.|+..|.+....|+.- -+|-.+++.+|..+.+.+..+...+...
T Consensus 91 ~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k~~~~~~~k~~k~~~~~~~~l~Ka 162 (312)
T 3abh_A 91 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAA 162 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556677777888889999999999988875 5666778888888877766655544433
No 40
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.26 E-value=2.3e+02 Score=21.09 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=26.0
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhc-cCCCCHHHHHHHHHHHHHH
Q 014033 161 ERRIDEALTALDEGEHLAAEAKQ-TKTLDPAMLISLENTIIDR 202 (432)
Q Consensus 161 er~feeAv~ll~~~~~~l~~~~~-~~~~~~~~~~~l~~~l~~r 202 (432)
.++|++|+.+|..+=..+..+-. .++ +..-..|+.++.+-
T Consensus 24 ~g~y~eAl~lY~~aie~l~~~lk~e~d--~~~k~~ir~K~~eY 64 (83)
T 2v6y_A 24 EGKVEDAITYYKKAIEVLSQIIVLYPE--SVARTAYEQMINEY 64 (83)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHH
Confidence 78999999999998888765421 121 11244566666654
Done!