Query 014036
Match_columns 432
No_of_seqs 287 out of 1692
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 01:13:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1471 Phosphatidylinositol t 100.0 2.4E-39 5.2E-44 318.2 22.5 241 56-318 11-261 (317)
2 KOG1470 Phosphatidylinositol t 100.0 1.6E-38 3.4E-43 300.9 16.5 198 102-315 45-244 (324)
3 PF00650 CRAL_TRIO: CRAL/TRIO 100.0 5.2E-30 1.1E-34 226.2 11.9 153 151-313 3-159 (159)
4 smart00516 SEC14 Domain in hom 99.9 1.3E-26 2.8E-31 204.3 13.3 144 161-315 14-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.9 3.9E-24 8.5E-29 187.1 12.9 143 158-313 12-157 (157)
6 PF13897 GOLD_2: Golgi-dynamic 99.9 1.2E-23 2.6E-28 172.7 11.0 92 332-425 1-134 (136)
7 KOG3878 Protein involved in ma 99.6 1E-15 2.3E-20 142.5 6.4 95 329-425 323-466 (469)
8 PF13716 CRAL_TRIO_2: Divergen 99.4 4.4E-13 9.6E-18 117.0 4.6 137 158-315 5-145 (149)
9 PF03765 CRAL_TRIO_N: CRAL/TRI 98.8 8.4E-09 1.8E-13 74.0 5.6 54 68-130 1-55 (55)
10 KOG4406 CDC42 Rho GTPase-activ 98.1 1.5E-05 3.3E-10 78.0 9.6 123 162-304 89-213 (467)
11 KOG3287 Membrane trafficking p 97.3 0.0032 6.8E-08 56.7 11.0 104 305-426 17-128 (236)
12 KOG1693 emp24/gp25L/p24 family 95.4 0.092 2E-06 46.9 8.3 76 342-427 38-117 (209)
13 KOG1692 Putative cargo transpo 92.7 0.71 1.5E-05 41.1 8.2 73 334-427 39-113 (201)
14 PF09394 Inhibitor_I42: Chagas 85.6 11 0.00025 29.2 9.7 76 330-415 1-77 (92)
15 PF01105 EMP24_GP25L: emp24/gp 83.6 0.34 7.5E-06 42.8 0.0 88 330-427 4-99 (183)
16 PF02845 CUE: CUE domain; Int 80.3 7.3 0.00016 25.7 5.6 27 103-129 14-40 (42)
17 smart00110 C1Q Complement comp 77.4 6.2 0.00013 33.6 5.7 21 390-410 38-58 (135)
18 smart00546 CUE Domain that may 74.5 11 0.00023 25.0 5.1 26 103-128 15-40 (43)
19 PF08938 HBS1_N: HBS1 N-termin 69.0 2.1 4.6E-05 32.8 0.7 52 61-130 18-70 (79)
20 PF14555 UBA_4: UBA-like domai 68.5 7.6 0.00016 25.8 3.3 24 105-128 14-37 (43)
21 PF00386 C1q: C1q domain; Int 64.1 5.9 0.00013 33.0 2.6 23 390-412 32-54 (127)
22 PF06972 DUF1296: Protein of u 54.3 57 0.0012 23.4 5.6 26 104-129 19-44 (60)
23 smart00804 TAP_C C-terminal do 46.9 1.1E+02 0.0024 22.3 6.8 47 60-130 5-51 (63)
24 PF00627 UBA: UBA/TS-N domain; 45.1 39 0.00084 21.4 3.5 23 105-127 15-37 (37)
25 smart00165 UBA Ubiquitin assoc 44.0 37 0.0008 21.3 3.3 24 104-127 13-36 (37)
26 cd00194 UBA Ubiquitin Associat 43.2 39 0.00085 21.3 3.3 25 104-128 13-37 (38)
27 PF03474 DMA: DMRTA motif; In 41.4 50 0.0011 21.6 3.4 25 103-127 14-38 (39)
28 cd05860 Ig4_SCFR Fourth immuno 30.5 2.9E+02 0.0062 22.2 9.2 83 328-426 11-99 (101)
29 PF06394 Pepsin-I3: Pepsin inh 26.3 35 0.00077 25.9 1.1 38 44-81 21-58 (76)
30 PRK10363 cpxP periplasmic repr 25.8 3.2E+02 0.007 24.1 7.1 60 61-136 49-108 (166)
31 PF03641 Lysine_decarbox: Poss 25.7 1.3E+02 0.0029 25.2 4.7 43 256-301 86-133 (133)
32 PF11138 DUF2911: Protein of u 24.5 2.5E+02 0.0055 24.2 6.2 77 328-413 59-140 (145)
33 PF04838 Baculo_LEF5: Baculovi 24.3 54 0.0012 28.2 2.0 48 239-287 17-68 (159)
34 PF14213 DUF4325: Domain of un 24.0 2.2E+02 0.0047 21.1 5.1 47 223-270 20-68 (74)
35 PRK12751 cpxP periplasmic stre 22.8 3.6E+02 0.0078 23.7 6.9 60 61-136 55-114 (162)
36 TIGR03769 P_ac_wall_RPT actino 22.1 96 0.0021 20.5 2.4 18 395-412 5-22 (41)
37 PF11964 SpoIIAA-like: SpoIIAA 21.9 3.2E+02 0.007 21.3 6.2 64 219-288 31-95 (109)
38 PF08536 Whirly: Whirly transc 20.1 1.2E+02 0.0027 25.8 3.2 32 394-426 23-59 (139)
39 KOG1534 Putative transcription 20.0 2.1E+02 0.0047 26.5 5.0 102 200-304 75-192 (273)
No 1
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=318.19 Aligned_cols=241 Identities=30% Similarity=0.486 Sum_probs=200.3
Q ss_pred ccCcCCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 014036 56 DSYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRK 135 (432)
Q Consensus 56 ~~~~l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~ 135 (432)
....++++++.+++.++++| |+.... +++ ....+|.+|+||||||+||+++|.+||.+++.||+
T Consensus 11 ~~~~~~~~~~~~~~~i~~lr-~~~~~~--------------~l~-~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~ 74 (317)
T KOG1471|consen 11 AKEELNEITESEEAVIAQLR-WLLQKP--------------HLP-NKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRK 74 (317)
T ss_pred cccccCCCcHHHHHHHHHHH-HHhhcc--------------CCC-CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 34457889999999999999 555553 343 13789999999999999999999999999999999
Q ss_pred HhCCCCCcccCCChhhhcc-ceeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhh---
Q 014036 136 EFGADGIVEEDLGFKELEG-VVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLL--- 211 (432)
Q Consensus 136 ~~~~d~i~~~~~~~~~l~~-~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~--- 211 (432)
+++++.+....-....+.. ...+.+|.|++|+|+++.+.|..|.++++.++.. .++.++.+..+|+....+
T Consensus 75 ~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~-----~~~~~~~~~~~e~~~~~~~e~ 149 (317)
T KOG1471|consen 75 RNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGS-----LDYLKYHFKEFEKVFKLVLEL 149 (317)
T ss_pred HhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCcccceeeccH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 9999998875111133333 3357899999999999999999999998865432 666777666666555332
Q ss_pred --ccCCCCeeeEEEEEeCCCCCchhHH----HHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceE
Q 014036 212 --HFKPGGVNSIIQVTDLKDMPKRELR----VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKF 285 (432)
Q Consensus 212 --~~~~~~~~~iv~IiDl~g~s~~~~~----~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI 285 (432)
+...++++|+++|+||+|++++++. ..++.++.++|++|||+++++||||+|++|+++|+++||||+++|++||
T Consensus 150 ~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki 229 (317)
T KOG1471|consen 150 ELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKI 229 (317)
T ss_pred HHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhh
Confidence 1124579999999999999998873 5789999999999999999999999999999999999999999999999
Q ss_pred EEecCCccHHHHhcccCCCCCcccCCCCCCCCC
Q 014036 286 VISKEGNVAETLYKFVRPEDIPVQYGGLSRPSD 318 (432)
Q Consensus 286 ~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~d 318 (432)
++++ +++.++|+++|++++||.+|||++.+.+
T Consensus 230 ~~~~-~~~~~~L~k~i~~~~LP~~yGG~~~~~~ 261 (317)
T KOG1471|consen 230 HVLH-SKDKESLLKYIPPEVLPEEYGGTCGDLD 261 (317)
T ss_pred eecC-CCchhhhhhhCCHhhCccccCCCccccc
Confidence 9554 5789999999999999999999999864
No 2
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=300.85 Aligned_cols=198 Identities=30% Similarity=0.563 Sum_probs=173.3
Q ss_pred CCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCC-CcccCCChhhhccceeeeeccCCCCCeEEEEEcCccCch
Q 014036 102 DERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGADG-IVEEDLGFKELEGVVAYMQGYDREGHPVCYNAYGVFRDK 180 (432)
Q Consensus 102 ~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~~~~d~-i~~~~~~~~~l~~~~~~~~g~Dk~GrpV~~~~~g~~d~~ 180 (432)
...+|.+++||||||+||+++|.+||.++|.||+.+++.. +..+++. .+++.+.+|+.|+|++||||+|++.......
T Consensus 45 ~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~-~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn 123 (324)
T KOG1470|consen 45 KWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVA-AELETGKAYILGHDKDGRPVLYLRPRPHRQN 123 (324)
T ss_pred hcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHH-HHhhcCcEEEecccCCCCeEEEEecCCCCCC
Confidence 4568999999999999999999999999999999999988 5555555 5667777899999999999999965543221
Q ss_pred hhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCchhH-HHHHHHHHHHHhhccccccceEEE
Q 014036 181 DMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL-RVASNQILSLFQDNYPEMVARKIF 259 (432)
Q Consensus 181 ~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~~~~-~~~~k~~~~~lq~~YPe~l~~i~i 259 (432)
. .+..++.|+++|+||.++..| +.+++++++++|++|+|++++ ....+.++.+||+||||||+..++
T Consensus 124 ~---------~t~~~~~r~~Vy~mE~Ai~~l---p~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l 191 (324)
T KOG1470|consen 124 T---------KTQKELERLLVYTLENAILFL---PPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALL 191 (324)
T ss_pred C---------CCHHHHHHHHHHHHHHHHHhC---CCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhh
Confidence 1 123789999999999998765 677899999999999999887 578999999999999999999999
Q ss_pred EeCchhHHHHHhhhccCCCccccceEEEecCCccHHHHhcccCCCCCcccCCCCCC
Q 014036 260 INVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSR 315 (432)
Q Consensus 260 INaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~ 315 (432)
+|+||+|..+|+++||||++.|++||.|+.+ ...|.+|||+++||..|||+..
T Consensus 192 ~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~---~~~l~~~~d~~~l~s~~GG~~~ 244 (324)
T KOG1470|consen 192 VNAPWIFQPFWKIIKPFLDPKTASKVKFVEP---KDDLSEYFDESQLPSLFGGKLL 244 (324)
T ss_pred cCChHHHHHHHHHhhhccChhhhceeEEecC---hhHHHhhCCccccchhhCCCcc
Confidence 9999999999999999999999999999963 4459999999999999999543
No 3
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.96 E-value=5.2e-30 Score=226.23 Aligned_cols=153 Identities=31% Similarity=0.640 Sum_probs=124.9
Q ss_pred hhccceeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCC
Q 014036 151 ELEGVVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDM 230 (432)
Q Consensus 151 ~l~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~ 230 (432)
.++.+..+++|+|++||||+|+++|++|.... +.++++++.++.+|.+++.+.. ....+++++|+|++|+
T Consensus 3 ~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~E~~~~~~~~-~~~~~~~~~iiD~~g~ 72 (159)
T PF00650_consen 3 ILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKF---------SPEDVIRFFVYLLERMLKRMPE-GGQVEGIVVIIDLSGF 72 (159)
T ss_dssp HHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS----------HHHHHHHHHHHHHHHHHTHHH-TSHHH-EEEEEE-TT-
T ss_pred HHCCeeEEECCCCCCcCEEEEEEcccCCCCcC---------CHHHHHHHHHHHHHHHHhhhcc-cccceeEEEEEeCCCc
Confidence 34556679999999999999999999887632 2378999999999999876543 3568999999999999
Q ss_pred CchhHH----HHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEecCCccHHHHhcccCCCCC
Q 014036 231 PKRELR----VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDI 306 (432)
Q Consensus 231 s~~~~~----~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~L 306 (432)
+++++. +.++.+++++|++||++++++||||+|++|+++|+++++||+++|++||+++++.++.+.|.++||+++|
T Consensus 73 ~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l 152 (159)
T PF00650_consen 73 SLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL 152 (159)
T ss_dssp -HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred eEeccccchhhhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence 987754 6789999999999999999999999999999999999999999999999999766677899999999999
Q ss_pred cccCCCC
Q 014036 307 PVQYGGL 313 (432)
Q Consensus 307 P~~yGG~ 313 (432)
|++|||+
T Consensus 153 P~~~GG~ 159 (159)
T PF00650_consen 153 PVEYGGT 159 (159)
T ss_dssp BGGGTSS
T ss_pred chhcCCC
Confidence 9999996
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.94 E-value=1.3e-26 Score=204.26 Aligned_cols=144 Identities=33% Similarity=0.656 Sum_probs=128.7
Q ss_pred ccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCchhH-HHHH
Q 014036 161 GYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL-RVAS 239 (432)
Q Consensus 161 g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~~~~-~~~~ 239 (432)
|.|++||||+++++++++.... +.+++++++++.+|.+++. ...+.++.++++|+|++|++++++ .+.+
T Consensus 14 g~D~~GrpV~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~i~D~~~~~~~~~~~~~l 83 (158)
T smart00516 14 GYDKDGRPVLIFRAGRFDLKSV---------TLEELLRYLVYVLEKILQR-EKKTGGIEGFTVIFDLKGLSMSNPDLSVL 83 (158)
T ss_pred CCCCCcCEEEEEeccccccCcC---------CHHHHHHHHHHHHHHHHHH-HhcCCCeeeEEEEEECCCCCcccccHHHH
Confidence 7999999999999999875431 2488999999999998865 224567899999999999998776 4789
Q ss_pred HHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEecCCccHHHHhcccCCCCCcccCCCCCC
Q 014036 240 NQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSR 315 (432)
Q Consensus 240 k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~ 315 (432)
+.++.+++++||++++++||||+|++++++|+++++||++++++||++++ +++.+.|.++||+++||++|||++.
T Consensus 84 k~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~-~~~~~~L~~~i~~~~lP~~~GG~~~ 158 (158)
T smart00516 84 RKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVG-NDSKEELLEYIDPEQLPEELGGTLD 158 (158)
T ss_pred HHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeC-CCCHHHHHhhCCHhhCcHhhCCCCC
Confidence 99999999999999999999999999999999999999999999999997 3568999999999999999999973
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.91 E-value=3.9e-24 Score=187.09 Aligned_cols=143 Identities=32% Similarity=0.600 Sum_probs=123.7
Q ss_pred eeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCchhH--
Q 014036 158 YMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL-- 235 (432)
Q Consensus 158 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~~~~-- 235 (432)
+..|.|++||||++.++++.+...... .++++++.++.+|..++... ....++++|+|++|++++++
T Consensus 12 ~~~~~D~~gr~V~~~~~~~~~~~~~~~--------~~~~~~~~~~~~e~~~~~~~---~~~~~~~~i~D~~~~~~~~~~~ 80 (157)
T cd00170 12 YLGGRDKEGRPVLIIRAGNKDLSKSLD--------SEELLRYLVYTLEKLLQEDD---EQVEGFVVIIDLKGLSLSHLLP 80 (157)
T ss_pred ccCCCCCCcCEEEEEecCCcchhhcCC--------HHHHHHHHHHHHHHHHhhhh---hcccceEEEEECCCCChhccch
Confidence 455679999999999999755543321 26789999999999887643 22379999999999998764
Q ss_pred -HHHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEecCCccHHHHhcccCCCCCcccCCCC
Q 014036 236 -RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGL 313 (432)
Q Consensus 236 -~~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~ 313 (432)
.+.++.++.+++++||++++++||||+|++|+.+|+++++|+++++++||+++++ + .+.|.++|++++||.+|||+
T Consensus 81 ~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~-~-~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 81 DPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGS-D-KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred hHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecC-C-HHHHHhhCChhhCcHhhCCC
Confidence 3678999999999999999999999999999999999999999999999999963 2 89999999999999999996
No 6
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=99.90 E-value=1.2e-23 Score=172.72 Aligned_cols=92 Identities=24% Similarity=0.351 Sum_probs=79.7
Q ss_pred eeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEEEeeC---------------CC-----------------------
Q 014036 332 VKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPN---------------AE----------------------- 373 (432)
Q Consensus 332 V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~~~~~---------------~~----------------------- 373 (432)
|++|+..+|.++....|..|.|+|.|+++||+||++|.=. ++
T Consensus 1 v~~Ge~~tvrVpt~~~G~~l~WeFaTd~yDIgFG~~few~~~~s~~vsv~vses~de~~~~~~~~~~~~~~~ve~gs~~~ 80 (136)
T PF13897_consen 1 VGRGETVTVRVPTHPEGKCLFWEFATDSYDIGFGVYFEWTPPTSNQVSVHVSESSDEEDEEEEEEEDSESGDVEKGSERS 80 (136)
T ss_pred CCcCcEEEEEcccCCCCCEEEEEEeeCCCCceEEEEEEecCCCCCceeEecccCccccccccccccccCccchhcccccc
Confidence 6789999999999999999999999999999999999710 00
Q ss_pred --CceEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEeCCCcc--cccceEEEEE
Q 014036 374 --GSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSSR--RRKVAAYRYI 425 (432)
Q Consensus 374 --~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fdNs~S~--~kk~~~Y~~~ 425 (432)
+.+.++|| ..|++||++++.|++.|+.+|+|+|+||||||| +||| .|+|-
T Consensus 81 ~~~~~~eviP-v~R~dsH~~~~~Gs~~c~~~GvYvLkFDNSYS~~rsK~l-~Y~V~ 134 (136)
T PF13897_consen 81 SRPEMDEVIP-VYRRDSHLEVEAGSHTCPGPGVYVLKFDNSYSWFRSKKL-YYRVY 134 (136)
T ss_pred CCCCeeEEeE-eeeeecCcceeceEEECCCCeEEEEEeeCcceeEEeeEE-EEEEE
Confidence 01356666 899999999999999999999999999999994 7888 99984
No 7
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1e-15 Score=142.45 Aligned_cols=95 Identities=23% Similarity=0.369 Sum_probs=79.9
Q ss_pred ceeeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEEEe-------------eC-CCCc-------------------
Q 014036 329 EFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFV-------------PN-AEGS------------------- 375 (432)
Q Consensus 329 ~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~~~-------------~~-~~~~------------------- 375 (432)
-++|..|.+.+|.++..+.|+.|.|+|.|+++||+|||+|. ++ ++++
T Consensus 323 vItvGhGetVTVRVPThenGsclFWEFATD~YDIGFGvYFEWt~~~~n~VsVHVSeSddded~~~~~e~E~~e~G~~~~E 402 (469)
T KOG3878|consen 323 VITVGHGETVTVRVPTHENGSCLFWEFATDSYDIGFGVYFEWTKPVTNEVSVHVSESDDDEDCVYLSETEDLESGSLSQE 402 (469)
T ss_pred eEEecCCceEEEeccccCCCceEEEEeccccccccceEEEEeecCCCceeEEEecccccchhhhhhhhhhhhhcCCchhh
Confidence 58999999999999999999999999999999999999997 01 1110
Q ss_pred --------------eEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEeCCCc-c-cccceEEEEE
Q 014036 376 --------------YTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSS-R-RRKVAAYRYI 425 (432)
Q Consensus 376 --------------~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fdNs~S-~-~kk~~~Y~~~ 425 (432)
..+||| .-|+.||++.-.||...|.-|+|.|+|||||| | +|.+ .||+-
T Consensus 403 ~gA~~n~~~anKp~~deIvP-vYRRdCheEVYaGSH~YPGrGvYLLKFDNSYSlWRsKtl-YYRVY 466 (469)
T KOG3878|consen 403 RGAVNNPTAANKPPIDEIVP-VYRRDCHEEVYAGSHSYPGRGVYLLKFDNSYSLWRSKTL-YYRVY 466 (469)
T ss_pred hhhhcCCCCCCCCCcccccc-hhhhhhhHHhhcccccCCCCceEEEEecchhhhhcccce-EEEEE
Confidence 134555 77889999989999999999999999999999 7 6666 89874
No 8
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=99.36 E-value=4.4e-13 Score=117.02 Aligned_cols=137 Identities=20% Similarity=0.375 Sum_probs=92.7
Q ss_pred eeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCchh--H
Q 014036 158 YMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKRE--L 235 (432)
Q Consensus 158 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~~~--~ 235 (432)
+..|+|++||||+++...++ ... ...+.++.+++..++.. -...++++|+|+++++..+ -
T Consensus 5 ~~gG~d~~g~pV~~~~~~~~-~~~---------~~~~~ll~yl~~~l~~~--------~~~~~f~vVid~~~~~~~~~~~ 66 (149)
T PF13716_consen 5 YPGGRDREGRPVVVFIASRL-PSS---------DDLERLLLYLLSTLSEE--------VVDKPFSVVIDHTGFSRSSEPS 66 (149)
T ss_dssp EEEEEBTTS-EEEEEEGGG--C-T---------THHHHHHHHHHHHH-TT--------TTTS-EEEEEE-TT--GGG---
T ss_pred EecccCCCcCEEEEEECCcC-cch---------hhHHHHHHHHHHhhhHH--------hcCCCEEEEEEcCCCccccCCc
Confidence 56689999999999987665 211 12355555544444111 1134699999999998644 3
Q ss_pred HHHHHHHHHHHhhccccccceEEEEeCchhHHHHH-hhhccCCCccc-cceEEEecCCccHHHHhcccCCCCCcccCCCC
Q 014036 236 RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLY-SMFSPFLTQRT-KSKFVISKEGNVAETLYKFVRPEDIPVQYGGL 313 (432)
Q Consensus 236 ~~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~-~lvkpfL~~~t-~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~ 313 (432)
+..++++..++...|+..|+++||||+.++++.+. .+.+++.+.+. ..||+++. ..++|.++||+++||..+||+
T Consensus 67 ~~~l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~---sl~~L~~~i~~~qL~~~lp~~ 143 (149)
T PF13716_consen 67 LSWLKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVS---SLSELSKHIDPSQLPESLPGV 143 (149)
T ss_dssp HHHHHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEES---STCGGGGTSGGGG------HH
T ss_pred hHHHHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEEC---CHHHHHhhCCHHHhcccCCCE
Confidence 67889999999999999999999999999999999 66678888888 99999985 588999999999999999987
Q ss_pred CC
Q 014036 314 SR 315 (432)
Q Consensus 314 ~~ 315 (432)
..
T Consensus 144 ~~ 145 (149)
T PF13716_consen 144 LQ 145 (149)
T ss_dssp H-
T ss_pred Ee
Confidence 64
No 9
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=98.81 E-value=8.4e-09 Score=73.96 Aligned_cols=54 Identities=35% Similarity=0.551 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccccc-cCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 68 KKALQELKNRLADSHNGSGENECSMWGIP-LLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 68 ~~~l~elr~~l~~~~~~~~~~~~~~~g~p-~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
+++|++|++.|.+.... . ++.+ .. ....+|.+|+||||||+||+++|.+||.++
T Consensus 1 k~~l~~l~~~l~~~~~~----~---~~~~~~~--~~~~~d~~llRFLRARkf~v~~A~~mL~~t 55 (55)
T PF03765_consen 1 KQKLKQLREHLSELDEK----A---PGLWDDE--KEDHDDNFLLRFLRARKFDVEKAFKMLKKT 55 (55)
T ss_dssp HHHHHHHHHHHHH--GG----G---THHHTTH--TSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccc----h---hcccccc--cCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence 46899999999986321 0 1111 11 256799999999999999999999999875
No 10
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=1.5e-05 Score=77.95 Aligned_cols=123 Identities=10% Similarity=0.260 Sum_probs=94.4
Q ss_pred cCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCc--hhHHHHH
Q 014036 162 YDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPK--RELRVAS 239 (432)
Q Consensus 162 ~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~--~~~~~~~ 239 (432)
.|+.||.|+++...++....-+. + ..++++.++.++..++. -++.+.=-.|+.. ++-++.+
T Consensus 89 ~D~~gr~iivv~a~rlp~~~eld----~----~~li~~~v~~id~~Ve~---------DYt~vYfh~gl~s~nkp~l~~l 151 (467)
T KOG4406|consen 89 KDKQGRKIIVVYACRLPSSSELD----D----IRLISYLVYTIDKYVEN---------DYTLVYFHHGLPSDNKPYLQLL 151 (467)
T ss_pred ccccCCeeEEEEEecCCchhhhh----h----HHHHHHHHHHHHHHHhc---------cceeeehhcCCcccccchHHHH
Confidence 69999999999888875443221 1 33888889999988742 2555555556653 3345666
Q ss_pred HHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEecCCccHHHHhcccCCC
Q 014036 240 NQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPE 304 (432)
Q Consensus 240 k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~ 304 (432)
.....-+..+|=--++.+|+|.+-||.+++|+++|||++.+..+||+.+. ..++|.++|.-+
T Consensus 152 ~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n---~lseL~~~l~l~ 213 (467)
T KOG4406|consen 152 FDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN---SLSELFEALKLN 213 (467)
T ss_pred HHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee---hHHHHHHhhhhh
Confidence 66666677778889999999999999999999999999999999999994 688888877533
No 11
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0032 Score=56.66 Aligned_cols=104 Identities=23% Similarity=0.299 Sum_probs=60.4
Q ss_pred CCcccCCCCCCCCCCCCCCCC-CCcceeeeCCceEEEEEeeeCCCcEEEEEEEec----CCCeEEEEEEeeCCCCceEEE
Q 014036 305 DIPVQYGGLSRPSDLNHGPPK-PASEFTVKGGEKVNIQIEGIEAGATITWDIVVG----GWDLEYSAEFVPNAEGSYTIA 379 (432)
Q Consensus 305 ~LP~~yGG~~~~~d~~~g~~~-~~~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~----~~DI~F~v~~~~~~~~~~~~~ 379 (432)
.+|.+.+|-..+. +.. ..-++.|.||++.=.-=.+. .|.++.-+|.+- +.||+|.+.- ..|. .+
T Consensus 17 ~~~~~l~ga~g~~-----pa~d~dftv~ipAGk~eCf~Q~v~-~~~tle~eyQVi~G~GDl~i~Ftl~~---P~G~--~l 85 (236)
T KOG3287|consen 17 SPPVELLGAAGDQ-----PADDYDFTVMIPAGKTECFYQPVP-QGATLEVEYQVIDGAGDLDIDFTLLN---PAGE--VL 85 (236)
T ss_pred ccceecccccCCC-----cccccceEEEecCCCceeeeeecc-CCeEEEEEEEEEecCCccceeeEEeC---CCcc--EE
Confidence 3566666644322 111 12256677776544333343 366777777664 2488888862 2332 22
Q ss_pred eeCceeeCCCCcccccEEE--eCcCcEEEEEEeCCCc-ccccceEEEEEE
Q 014036 380 VEKPRKISPSEEAIRNSFT--SKEAGKLVLSVDNSSS-RRRKVAAYRYIV 426 (432)
Q Consensus 380 v~~~~r~~~~~~~~~g~~~--~~~~G~y~l~fdNs~S-~~kk~~~Y~~~v 426 (432)
++..++ ..|.++ ..++|-|.+-|||++| .+.|+|.+.+.+
T Consensus 86 v~~q~k-------~dg~ht~e~~e~GdY~~CfDNsFS~fs~K~Vffeli~ 128 (236)
T KOG3287|consen 86 VSDQRK-------VDGVHTVEVTETGDYQVCFDNSFSTFSRKLVFFELIL 128 (236)
T ss_pred eecccc-------cCceeEeeccCCcceEEEEcCccccccceEEEEEEEe
Confidence 332222 135444 4589999999999999 588876777743
No 12
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=0.092 Score=46.89 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=48.3
Q ss_pred EeeeCCCcEEEEEEEec---CCCeEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEeCCCc-ccc
Q 014036 342 IEGIEAGATITWDIVVG---GWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSS-RRR 417 (432)
Q Consensus 342 i~v~~~g~~l~W~f~t~---~~DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fdNs~S-~~k 417 (432)
..+.+.++++..+|.+. +.||+|-|+ +.+|.. +....+|... +-.|++...|+|.+-|+|.+| .++
T Consensus 38 ~d~~~~~~~~~~~fqV~tGG~fDVD~~I~---aPdgkv--I~~~~kk~~~-----~~~f~ae~~G~Y~fCFsN~fstf~~ 107 (209)
T KOG1693|consen 38 EDLKKDDDTTSFEFQVQTGGHFDVDYDIE---APDGKV--IYSEKKKRYD-----SFLFKAEGKGEYTFCFSNEFSTFSH 107 (209)
T ss_pred eecccCCceEEEEEEEEeCCceeeEEEEE---CCCCCE--Eeeccccccc-----cEEEEEecceEEEEEecCccccccc
Confidence 33444456566677664 448888886 233432 2221222222 467999999999999999999 688
Q ss_pred cceEEEEEEe
Q 014036 418 KVAAYRYIVR 427 (432)
Q Consensus 418 k~~~Y~~~v~ 427 (432)
|++....++.
T Consensus 108 Kiv~~~~q~~ 117 (209)
T KOG1693|consen 108 KIVYMDFQVG 117 (209)
T ss_pred eEeeehhhhc
Confidence 8844455554
No 13
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=0.71 Score=41.14 Aligned_cols=73 Identities=22% Similarity=0.406 Sum_probs=45.5
Q ss_pred CCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEeCCC
Q 014036 334 GGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSS 413 (432)
Q Consensus 334 ~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fdNs~ 413 (432)
.|.+..+.++|.+ | +.-||+|.|+- |+++ ++.+..|-.+. .=+|+++.+|+|.+-|+|.+
T Consensus 39 ~gd~~~vsF~v~~-g---------g~~~vd~~I~g-P~~~-----~i~~~~~~ssg----k~tF~a~~~G~Y~fCF~N~~ 98 (201)
T KOG1692|consen 39 EGDKLSVSFEVID-G---------GFLGVDVEITG-PDGK-----IIHKGKRESSG----KYTFTAPKKGTYTFCFSNKM 98 (201)
T ss_pred cCCEEEEEEEEec-C---------CccceeEEEEC-CCCc-----hhhhcccccCc----eEEEEecCCceEEEEecCCC
Confidence 5556666666554 1 12367777762 3221 12333332221 34688999999999999999
Q ss_pred c--ccccceEEEEEEe
Q 014036 414 S--RRRKVAAYRYIVR 427 (432)
Q Consensus 414 S--~~kk~~~Y~~~v~ 427 (432)
| -.|-+ .+.|++-
T Consensus 99 s~mtpk~V-~F~ihvg 113 (201)
T KOG1692|consen 99 STMTPKTV-MFTIHVG 113 (201)
T ss_pred CCCCceEE-EEEEEEe
Confidence 9 35555 9988884
No 14
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=85.59 E-value=11 Score=29.21 Aligned_cols=76 Identities=17% Similarity=0.334 Sum_probs=49.9
Q ss_pred eeeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEE-EEEEeeCCCCceEEEeeCceeeCCCCcccccEEEeCcCcEEEEE
Q 014036 330 FTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEY-SAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLS 408 (432)
Q Consensus 330 ~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F-~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~ 408 (432)
++++.|+...|.++- .+++-..|.+..+..-+.+ +-.|.+...+.. .+.. .....-.|++.++|+..|.
T Consensus 1 I~v~~g~~~~I~L~~-npstGY~W~~~~~~~~l~l~~~~~~~~~~~~~--------~vG~-~g~~~f~f~a~~~G~~~i~ 70 (92)
T PF09394_consen 1 ITVKVGDTFEIELPE-NPSTGYSWSLSSDSDGLQLVSEEYIPDNSPSG--------LVGA-PGTRTFTFKALKPGTTTIK 70 (92)
T ss_dssp -EEETTSEEEEEEEE-BCCGTBEEEECTSTTTEEEEEEEEEESSTSST--------SSTS-SEEEEEEEEESSSEEEEEE
T ss_pred CeecCCCEEEEEECC-CCCCCeEEEEecCCCeEEEcCCcEEeCCCCcC--------CCCC-CcEEEEEEEEecCeeEEEE
Confidence 478999999999975 3456688999874455555 333333211110 1111 1233577999999999999
Q ss_pred EeCCCcc
Q 014036 409 VDNSSSR 415 (432)
Q Consensus 409 fdNs~S~ 415 (432)
|....+|
T Consensus 71 ~~y~r~w 77 (92)
T PF09394_consen 71 FEYRRPW 77 (92)
T ss_dssp EEEEBTT
T ss_pred EEEECcC
Confidence 9999887
No 15
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=83.58 E-value=0.34 Score=42.83 Aligned_cols=88 Identities=30% Similarity=0.402 Sum_probs=0.0
Q ss_pred eeeeCCceEEEEEeeeCCCcEEEEEEEecCC----CeEEEEEEeeCCCCceEEEeeCceeeCCCCccc-ccEEEeCcCcE
Q 014036 330 FTVKGGEKVNIQIEGIEAGATITWDIVVGGW----DLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAI-RNSFTSKEAGK 404 (432)
Q Consensus 330 ~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~----DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~-~g~~~~~~~G~ 404 (432)
+.|.+|+..=+...+.. |..+...|.+.++ +|.|.|. .|+..+ ..++... . ...+ .=+|.+.++|.
T Consensus 4 f~l~~g~~~Cf~e~v~~-~~~i~~~y~v~~~~~~~~v~~~i~-~~~~~~--~~i~~~~-~----~~~~~~f~f~~~~~G~ 74 (183)
T PF01105_consen 4 FELEPGETECFYEEVPK-GTTIRGSYRVTDGGGAYDVDFTIR-DPDPNG--EVIYSKS-D----KESEGSFSFTAKESGE 74 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEECCCCcEEEEEEcCC-CcEEEEEEEEeeccccceEEEEEE-ecccCC--ceeeeec-c----cccCCcEEEEeccCCC
Confidence 34556655555555554 6677777766543 4666665 122111 2222210 1 1122 45688889999
Q ss_pred EEEEEeCCCc-cc--ccceEEEEEEe
Q 014036 405 LVLSVDNSSS-RR--RKVAAYRYIVR 427 (432)
Q Consensus 405 y~l~fdNs~S-~~--kk~~~Y~~~v~ 427 (432)
|.+.|+|+.+ +. +++ .+.+.+.
T Consensus 75 y~iCf~n~~~~~~~~~~v-~~~~~~~ 99 (183)
T PF01105_consen 75 YQICFDNSSSSFSPSKRV-SFDIDVG 99 (183)
T ss_dssp --------------------------
T ss_pred EEEEEEcCCCCccccEEE-EEEEEEe
Confidence 9999999998 33 555 6666653
No 16
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=80.34 E-value=7.3 Score=25.71 Aligned_cols=27 Identities=15% Similarity=0.150 Sum_probs=22.8
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
..+...+.+-|+++++|++.|..+|-.
T Consensus 14 ~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 14 DLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 557789999999999999999998754
No 17
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=77.38 E-value=6.2 Score=33.59 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=18.8
Q ss_pred CcccccEEEeCcCcEEEEEEe
Q 014036 390 EEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 390 ~~~~~g~~~~~~~G~y~l~fd 410 (432)
-.+..|.|+|+.||+|.+.|.
T Consensus 38 yd~~TG~Ftcpv~GvY~F~f~ 58 (135)
T smart00110 38 YDPRTGKFTCPVPGVYYFSYH 58 (135)
T ss_pred ccCCCCEEECeeceEEEEEEE
Confidence 446799999999999999997
No 18
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=74.55 E-value=11 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
..++..+.+-|+++++|++.|...|.
T Consensus 15 ~l~~~~I~~~L~~~~g~ve~~i~~LL 40 (43)
T smart00546 15 NLDEEVIKAVLEANNGNVEATINNLL 40 (43)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 55778899999999999999998875
No 19
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=69.05 E-value=2.1 Score=32.80 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCC-cHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDER-ADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~-~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
..|++++++.|.+-...+++.+. ... ++..|..=|..++|||++|+..|.+.
T Consensus 18 ~~Ls~ed~~~L~~~l~~vr~~Lg------------------~~~~~e~~i~eal~~~~fDvekAl~~Ll~~ 70 (79)
T PF08938_consen 18 DELSPEDQAQLYSCLPQVREVLG------------------DYVPPEEQIKEALWHYYFDVEKALDYLLSK 70 (79)
T ss_dssp HH-TCHHHHHHCHHCCCHHHHCC------------------CCC--CCHHHHHHHHTTT-CCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHc------------------ccCCCHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 46788888888777777776654 233 77788889999999999999988653
No 20
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=68.53 E-value=7.6 Score=25.82 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
++.....||.+++||++.|+..+-
T Consensus 14 ~~~~A~~~L~~~~wdle~Av~~y~ 37 (43)
T PF14555_consen 14 DEDVAIQYLEANNWDLEAAVNAYF 37 (43)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 557899999999999999998764
No 21
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=64.07 E-value=5.9 Score=32.97 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=17.2
Q ss_pred CcccccEEEeCcCcEEEEEEeCC
Q 014036 390 EEAIRNSFTSKEAGKLVLSVDNS 412 (432)
Q Consensus 390 ~~~~~g~~~~~~~G~y~l~fdNs 412 (432)
-.+..|.|+||.+|+|.+.|.=.
T Consensus 32 yn~~tG~Ftap~~G~Y~F~~~~~ 54 (127)
T PF00386_consen 32 YNPSTGIFTAPVPGVYFFSFTIM 54 (127)
T ss_dssp EETTTTEEE-SS-EEEEEEEEEE
T ss_pred cEeecCEEecCCCCEEEEEEEEe
Confidence 33679999999999999998633
No 22
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=54.33 E-value=57 Score=23.43 Aligned_cols=26 Identities=8% Similarity=0.146 Sum_probs=23.8
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
++|.-++.-|+-|+.|++.|.++|..
T Consensus 19 hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 68889999999999999999999865
No 23
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=46.89 E-value=1.1e+02 Score=22.27 Aligned_cols=47 Identities=6% Similarity=0.080 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 60 l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
...+++.|++.+.+|-..- ..+-.+-.++|...+||.++|.+.+.+.
T Consensus 5 ~~~~~~~q~~~v~~~~~~T------------------------gmn~~~s~~cLe~~~Wd~~~Al~~F~~l 51 (63)
T smart00804 5 KPTLSPEQQEMVQAFSAQT------------------------GMNAEYSQMCLEDNNWDYERALKNFTEL 51 (63)
T ss_pred CCCCCHHHHHHHHHHHHHH------------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567788887777776532 3456788999999999999999988664
No 24
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=45.06 E-value=39 Score=21.43 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=18.7
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNML 127 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l 127 (432)
+.....+-|+++++|+++|...|
T Consensus 15 ~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 15 SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp -HHHHHHHHHHTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHhC
Confidence 34578899999999999998764
No 25
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=44.01 E-value=37 Score=21.32 Aligned_cols=24 Identities=29% Similarity=0.117 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNML 127 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l 127 (432)
.+.....+-|+.+++|+++|...|
T Consensus 13 f~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 13 FSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHH
Confidence 345689999999999999998754
No 26
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=43.24 E-value=39 Score=21.33 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=20.9
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
.+.....+-|+++++|+++|...|.
T Consensus 13 f~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 13 FSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 3467889999999999999987763
No 27
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=41.36 E-value=50 Score=21.64 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNML 127 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l 127 (432)
......|..-|++|++|+-+|++.+
T Consensus 14 ~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 14 HQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred CCChHHHHHHHHHcCCcHHHHHHHh
Confidence 4455778889999999999999875
No 28
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=30.52 E-value=2.9e+02 Score=22.22 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=48.5
Q ss_pred cceeeeCCceEEEEEee-eCCCcE-EEEEEEec----CCCeEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEEEeCc
Q 014036 328 SEFTVKGGEKVNIQIEG-IEAGAT-ITWDIVVG----GWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKE 401 (432)
Q Consensus 328 ~~~~V~~g~~~~v~i~v-~~~g~~-l~W~f~t~----~~DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~ 401 (432)
..+.|..|+...+.+.+ .-|.-. +.|.+... ..|-.+ ......+..+...+- ..|+ +..+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~--~~~~~~~~rY~S~L~-L~Rl-----------k~~E 76 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYV--KSRNESNNRYVSELH-LTRL-----------KGTE 76 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCcccccee--EEeccCceEEEEEEE-Eeec-----------Chhh
Confidence 35678999988888777 345543 88997633 223112 111112333555444 5553 3567
Q ss_pred CcEEEEEEeCCCcccccceEEEEEE
Q 014036 402 AGKLVLSVDNSSSRRRKVAAYRYIV 426 (432)
Q Consensus 402 ~G~y~l~fdNs~S~~kk~~~Y~~~v 426 (432)
.|.|.+...|+.- +..+ .+.++|
T Consensus 77 ~G~YTf~a~N~~~-~~s~-tF~l~v 99 (101)
T cd05860 77 GGTYTFLVSNSDA-SASV-TFNVYV 99 (101)
T ss_pred CcEEEEEEECCCC-eEEE-EEEEEE
Confidence 8999999999863 2333 555554
No 29
>PF06394 Pepsin-I3: Pepsin inhibitor-3-like repeated domain; InterPro: IPR010480 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The members of this group of proteins belong to MEROPS inhibitor family I33, clan IR; the nematode aspartyl protease inhibitors or Aspins. They are restricted to parasitic nematode species. Structural features common to the nematode Aspins include the presence of a signal peptide sequence and the conservation of all four cysteine residues in the mature protein. The Y[V.A]RDLT sequence motif has been suggested as being of crucial functional importance in several filarial nematode inhibitors [], this sequence is not conserved in Tco-API-1 from Trichostrongylus colubriformis (Black scour worm) and it has been demonstrated that Tco-API-1, is not an Aspin as it does not inhibit porcine pepsin []. Related inhibitors from Onchocerca volvulus, Ov33 [] and Ascaris suum (Pig roundworm), PI-3 [] inhibit the in vitro activity of aspartyl proteases such as pepsin and cathepsin E (MEROPS peptidase family A1). Aspin may facilitate the safe passage of the eggs of Ascaris through the host stomach without digestion by pepsin [, ]. The other parasitic nematodes known to express homologous proteins do not pass through the stomach of their hosts []. Several proteins in the family are potent allergens in mammals. The three-dimensional structures of pepsin inhibitor-3 (PI-3) from A. suum and of the complex between PI-3 and porcine pepsin at 1. 75 A and 2.45 A resolution, respectively, have revealed the mechanism of aspartic protease inhibition. PI-3 has a new fold consisting of two identical domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the 'active site flap' (residues 70-82) of pepsin, thus forming an eight-stranded beta-sheet that spans the two proteins. PI-3 has a novel mode of inhibition, using its N-terminal residues to occupy and therefore block the first three binding pockets in pepsin for substrate residues C-terminal to the scissile bond (S1'-S3') [].; PDB: 1F32_A 1F34_B.
Probab=26.28 E-value=35 Score=25.90 Aligned_cols=38 Identities=11% Similarity=0.313 Sum_probs=26.4
Q ss_pred hhhhcCCCCCccccCcCCCCCHHHHHHHHHHHHHHhhc
Q 014036 44 EAATLRSPSFKEDSYFVSQLKSSEKKALQELKNRLADS 81 (432)
Q Consensus 44 ~~~~~~~~s~~~~~~~l~~L~~~q~~~l~elr~~l~~~ 81 (432)
.+|+++...+=-...++.+||++|.+.|+++.+.+...
T Consensus 21 ~GC~V~~nklyvng~~~R~Lt~~E~~eL~~y~~~v~~y 58 (76)
T PF06394_consen 21 DGCVVQNNKLYVNGKYARDLTPDEQQELKTYQKKVAAY 58 (76)
T ss_dssp TTEEEETTEEEETTCEEEE--HHHHHHHHHHHHHHHHH
T ss_pred eeeEEECCEEEECCEeeccCCHHHHHHHHHHHHHHHHH
Confidence 35555554444446778999999999999999988765
No 30
>PRK10363 cpxP periplasmic repressor CpxP; Reviewed
Probab=25.75 E-value=3.2e+02 Score=24.09 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~ 136 (432)
-+||+.|++.+.+|++.-...... . ....-.-+...+.+-+||-.++...+.+..+-+.+
T Consensus 49 LdLTdaQRqQmRdLm~~~r~~~~~-------------~---~~~er~amh~LI~ad~FDEaavra~a~kma~~~~e 108 (166)
T PRK10363 49 ISLTEHQRQQMRDLMQQARHEQPP-------------V---NVSEMETMHRLVTAENFDENAVRAQAEKMAQEQVA 108 (166)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccc-------------c---CHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999766544221 1 11223446678889999998888887776666554
No 31
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=25.72 E-value=1.3e+02 Score=25.17 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=34.5
Q ss_pred eEEEEeCchhHHHHHhhh-----ccCCCccccceEEEecCCccHHHHhccc
Q 014036 256 RKIFINVPWYFSMLYSMF-----SPFLTQRTKSKFVISKEGNVAETLYKFV 301 (432)
Q Consensus 256 ~i~iINaP~~f~~~~~lv-----kpfL~~~t~~KI~~~~~~~~~~~L~~~i 301 (432)
.++++|..-++.-++.++ ..|+++...+.+.++. +.+++.++|
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d---~~~e~~~~i 133 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVD---DPEEALEYI 133 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEES---SHHHHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeC---CHHHHHhhC
Confidence 699999988888888876 5799999999999984 466666543
No 32
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=24.53 E-value=2.5e+02 Score=24.17 Aligned_cols=77 Identities=17% Similarity=0.312 Sum_probs=43.3
Q ss_pred cceeeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEE-EEeeCCCCceEEEeeCceeeCCCCcccccEEEeCc--C--
Q 014036 328 SEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSA-EFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKE--A-- 402 (432)
Q Consensus 328 ~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v-~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~--~-- 402 (432)
....|+||+.--..|+-.+ .|.+.....-=..|. .|. .+++-...-++ ..+..... |.=++...+ +
T Consensus 59 gGk~l~AG~Ysl~tiP~~~-----~WtvI~n~~~~~wG~~~Y~-~~~Dv~rv~v~-~~~~~~~~--E~fti~f~~~~~~~ 129 (145)
T PF11138_consen 59 GGKKLKAGTYSLFTIPGED-----EWTVIFNKDTDQWGAYNYD-PSKDVLRVTVP-PQKLPEPV--ETFTISFEDITNNS 129 (145)
T ss_pred CCEEcCCeeEEEEEecCCC-----eEEEEEECCCCccCccccC-chheEEEEEee-eecCCCce--EEEEEEEEeCCCCe
Confidence 3467899988877776332 288877643335776 342 23333344344 44433332 333333333 2
Q ss_pred cEEEEEEeCCC
Q 014036 403 GKLVLSVDNSS 413 (432)
Q Consensus 403 G~y~l~fdNs~ 413 (432)
|.+.|.|||..
T Consensus 130 ~~l~l~We~t~ 140 (145)
T PF11138_consen 130 ANLTLSWENTK 140 (145)
T ss_pred EEEEEEECCEE
Confidence 78999999964
No 33
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=24.34 E-value=54 Score=28.21 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=41.6
Q ss_pred HHHHHHHHhhccccccc--eEEEEeCchhHHHHHhhhccCCCc--cccceEEE
Q 014036 239 SNQILSLFQDNYPEMVA--RKIFINVPWYFSMLYSMFSPFLTQ--RTKSKFVI 287 (432)
Q Consensus 239 ~k~~~~~lq~~YPe~l~--~i~iINaP~~f~~~~~lvkpfL~~--~t~~KI~~ 287 (432)
.+.++..|..+||.-++ ..-++|..-.|..+|.-+ |-++. +-|+.|++
T Consensus 17 y~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYv-P~~s~~~kERKQIRL 68 (159)
T PF04838_consen 17 YKELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYV-PSVSNVEKERKQIRL 68 (159)
T ss_pred HHHHHHHHHhhcccccccCeeecCCCchhhhhhhhcc-CCCchHhHHHHHhhh
Confidence 57889999999999998 889999999999999988 77777 66666766
No 34
>PF14213 DUF4325: Domain of unknown function (DUF4325)
Probab=24.02 E-value=2.2e+02 Score=21.13 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred EEEeCCCCCchhHHHHHHHHHHHHhhccc--cccceEEEEeCchhHHHHH
Q 014036 223 QVTDLKDMPKRELRVASNQILSLFQDNYP--EMVARKIFINVPWYFSMLY 270 (432)
Q Consensus 223 ~IiDl~g~s~~~~~~~~k~~~~~lq~~YP--e~l~~i~iINaP~~f~~~~ 270 (432)
+++|++|+..- -.+++..++..+...|+ +.-.++.++|+......+.
T Consensus 20 V~lDF~gv~~~-~ssFl~eafg~l~~~~~~~~~~~~l~~~~~~~~~~~~I 68 (74)
T PF14213_consen 20 VVLDFEGVESI-TSSFLNEAFGQLVREFGEEEIKKRLKFKNANESIKEMI 68 (74)
T ss_pred EEEECCCcccc-cHHHHHHHHHHHHHHcCHHHHhheeEEecCCHHHHHHH
Confidence 78999999631 12455555555555566 4556788888876555443
No 35
>PRK12751 cpxP periplasmic stress adaptor protein CpxP; Reviewed
Probab=22.76 E-value=3.6e+02 Score=23.71 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~ 136 (432)
-+||++|++.+..+.+.=...... . ....-.-+..-|++-+||..++...+.+...-+.+
T Consensus 55 l~LTd~QR~qmr~im~~~r~~~~~-------------~---~~~~~~~m~~Li~Ad~FDeaAvra~~~kma~~~~e 114 (162)
T PRK12751 55 INLTEQQRQQMRDLMRQSHQSQPR-------------L---DLEDREAMHKLITADKFDEAAVRAQAEKMSQNQIE 114 (162)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccc-------------h---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 589999999888877655443210 0 11233457889999999999998888776665554
No 36
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=22.08 E-value=96 Score=20.46 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=13.7
Q ss_pred cEEEeCcCcEEEEEEeCC
Q 014036 395 NSFTSKEAGKLVLSVDNS 412 (432)
Q Consensus 395 g~~~~~~~G~y~l~fdNs 412 (432)
....-.+||+|.|.|.=+
T Consensus 5 ~nW~FT~PG~Y~l~~~a~ 22 (41)
T TIGR03769 5 ANWVFTKPGTYTLTVQAT 22 (41)
T ss_pred cceeeCCCeEEEEEEEEE
Confidence 345667899999999643
No 37
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=21.91 E-value=3.2e+02 Score=21.29 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=40.1
Q ss_pred eeEEEEEeCC-CCCchhHHHHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEe
Q 014036 219 NSIIQVTDLK-DMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVIS 288 (432)
Q Consensus 219 ~~iv~IiDl~-g~s~~~~~~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~ 288 (432)
..+-+++|++ ++.--.. .......++... +...++++=+|-.+.+...+.+++..| ...-+.+.
T Consensus 31 ~~~~ll~d~~~~~~~~~~-~a~~~~~~~~~~-~~~~~~r~AvV~~~~~~~~~~~~~~~~----~~~~~~~F 95 (109)
T PF11964_consen 31 GKIRLLVDLRRDFEGWSP-EARWEDAKFGLK-HLKHFRRIAVVGDSEWIRMIANFFAAF----PPIEVRYF 95 (109)
T ss_dssp SSEEEEEEEC-CEEEEHH-HHHHHHHHHHCC-CCGGEEEEEEE-SSCCCHHHHHHHHHH-----SSEEEEE
T ss_pred CceEEEEEecCccCCCCH-HHHHHHHHhchh-hhcccCEEEEEECcHHHHHHHHHHHhc----CCCceEEE
Confidence 4577788887 6642112 222333333344 777888999999999999999998886 33345555
No 38
>PF08536 Whirly: Whirly transcription factor; InterPro: IPR013742 This is a family of plant transcription factors. ; PDB: 3R9Y_A 3N1I_A 3N1K_A 3RA0_A 3N1H_A 3N1J_A 3N1L_A 3R9Z_A 1L3A_D.
Probab=20.06 E-value=1.2e+02 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=23.1
Q ss_pred ccEEEeCcCcEEEEEEeCCCc-----ccccceEEEEEE
Q 014036 394 RNSFTSKEAGKLVLSVDNSSS-----RRRKVAAYRYIV 426 (432)
Q Consensus 394 ~g~~~~~~~G~y~l~fdNs~S-----~~kk~~~Y~~~v 426 (432)
.|.++..++|...|.|-+.-. |.||. .|.+.+
T Consensus 23 sg~~kv~R~G~vlLefapa~g~r~YDW~kKq-~FsLS~ 59 (139)
T PF08536_consen 23 SGYFKVSREGSVLLEFAPAVGPRQYDWSKKQ-TFSLSP 59 (139)
T ss_dssp TSCEEEEC--EEEEEEEEBCSTTEB-GGG-E-EEEE-H
T ss_pred CCcEEEeeccEEEEEEccccCCcccccccce-EEEEcH
Confidence 699999999999999997755 78887 666554
No 39
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=20.05 E-value=2.1e+02 Score=26.54 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhc---cCCCCeeeEEEEEeCCCCC--chhHHHHHHHHHHHHhhccccccceEEEEeCc------hhHHH
Q 014036 200 RVQVLERGINLLH---FKPGGVNSIIQVTDLKDMP--KRELRVASNQILSLFQDNYPEMVARKIFINVP------WYFSM 268 (432)
Q Consensus 200 ~~~~~E~~~~~~~---~~~~~~~~iv~IiDl~g~s--~~~~~~~~k~~~~~lq~~YPe~l~~i~iINaP------~~f~~ 268 (432)
++|+||+.+..++ ...+..+.-.+|+|+-|-= +.|+ .++++++.-++. .=.++..+|++..+ .||+.
T Consensus 75 Lv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIELytH~-pVm~~iv~hl~~-~~F~~c~Vylldsqf~vD~~KfiSG 152 (273)
T KOG1534|consen 75 LVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIELYTHL-PVMPQIVEHLKQ-WNFNVCVVYLLDSQFLVDSTKFISG 152 (273)
T ss_pred chhHHHHHHHHHHHHHhhccCccCCEEEEeCCCeeEEeecC-hhHHHHHHHHhc-ccCceeEEEEeccchhhhHHHHHHH
Confidence 3556666554432 2335567778899998744 2332 356666666666 22345556665554 55555
Q ss_pred HHhhhccCCCc-----cccceEEEecCCccHHHHhcccCCC
Q 014036 269 LYSMFSPFLTQ-----RTKSKFVISKEGNVAETLYKFVRPE 304 (432)
Q Consensus 269 ~~~lvkpfL~~-----~t~~KI~~~~~~~~~~~L~~~i~~~ 304 (432)
.++.++.++.= ...+|.-+++ +..++.|.++.+++
T Consensus 153 ~lsAlsAMi~lE~P~INvlsKMDLlk-~~~k~~l~~Fl~~d 192 (273)
T KOG1534|consen 153 CLSALSAMISLEVPHINVLSKMDLLK-DKNKKELERFLNPD 192 (273)
T ss_pred HHHHHHHHHHhcCcchhhhhHHHHhh-hhhHHHHHHhcCCc
Confidence 55555444332 2344555554 34567777777655
Done!