Query 014036
Match_columns 432
No_of_seqs 287 out of 1692
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:20:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014036.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014036hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 2.1E-71 7.2E-76 561.6 37.1 349 57-430 2-387 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 5.6E-48 1.9E-52 377.3 21.3 245 53-320 25-286 (320)
3 1aua_A Phosphatidylinositol tr 100.0 5.7E-47 2E-51 367.4 21.8 245 55-322 18-273 (296)
4 1r5l_A Alpha-TTP, protein (alp 100.0 3.4E-44 1.1E-48 341.8 18.2 227 61-316 2-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 2E-43 7E-48 344.9 17.4 240 58-318 49-296 (316)
6 3pg7_A Neurofibromin; SEC lipi 98.9 6.5E-10 2.2E-14 104.3 5.9 128 158-306 14-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.7 1.5E-08 5.1E-13 96.4 5.1 127 158-305 33-162 (290)
8 1wgl_A TOLL-interacting protei 83.6 2.2 7.5E-05 29.7 5.2 27 103-129 22-48 (59)
9 2dam_A ETEA protein; KIAA0887, 79.1 7.4 0.00025 27.7 6.9 46 61-129 12-57 (67)
10 2cio_B Inhibitor of cysteine p 77.1 26 0.0009 27.9 10.9 97 326-426 11-117 (121)
11 1ufz_A Hypothetical protein BA 76.7 10 0.00035 28.1 7.0 51 62-130 25-75 (83)
12 2dal_A Protein KIAA0794; FAS a 75.3 12 0.00042 26.1 7.0 46 59-128 7-52 (62)
13 2dhy_A CUE domain-containing p 74.1 7 0.00024 27.9 5.5 28 103-130 31-58 (67)
14 3m86_A Amoebiasin-2; cysteine 72.1 32 0.0011 27.0 9.6 92 326-427 14-111 (111)
15 4g9s_B Inhibitor of G-type lys 68.6 18 0.0006 28.4 7.4 86 331-427 21-109 (111)
16 2wnv_A C1Q chain A, complement 67.4 3.4 0.00012 33.8 3.0 23 389-411 32-54 (134)
17 2wnv_C C1Q chain C, complement 67.3 3.2 0.00011 33.9 2.8 21 390-410 37-57 (131)
18 2wnv_B C1Q chain B, complement 67.2 3.2 0.00011 34.1 2.8 22 389-410 35-56 (136)
19 1gr3_A Collagen X; extracellul 66.9 4.4 0.00015 34.3 3.7 22 390-411 62-83 (160)
20 2ka3_A Emilin-1; C1Q-like doma 65.3 3.5 0.00012 35.0 2.7 22 389-410 45-66 (162)
21 2h7w_A Chagasin; beta-strands, 63.1 44 0.0015 27.1 8.9 89 326-426 31-128 (131)
22 1o91_A Collagen alpha 1(VIII) 61.1 5.7 0.00019 34.3 3.3 22 389-410 79-100 (178)
23 2di0_A Activating signal coint 60.4 21 0.00073 25.7 5.6 27 103-129 26-52 (71)
24 1oai_A Nuclear RNA export fact 59.6 38 0.0013 23.3 6.7 45 62-130 2-46 (59)
25 1otr_A Protein CUE2; protein-p 59.5 16 0.00055 24.3 4.5 28 103-130 17-44 (49)
26 1vej_A Riken cDNA 4931431F19; 59.5 34 0.0011 24.8 6.7 25 105-129 43-67 (74)
27 2jp7_A MRNA export factor MEX6 53.7 49 0.0017 22.6 6.4 44 62-129 1-44 (57)
28 1wgn_A UBAP1, ubiquitin associ 53.0 28 0.00097 24.2 5.0 46 60-130 12-57 (63)
29 2c34_A ICP, inhibitor of cyste 49.1 94 0.0032 24.4 9.0 92 325-426 12-113 (116)
30 1z96_A DNA-damage, UBA-domain 48.0 20 0.0007 22.0 3.6 23 105-127 17-39 (40)
31 2knz_A Ubiquilin-4; cytoplasm, 46.7 30 0.001 23.2 4.4 25 105-129 25-49 (53)
32 3lay_A Zinc resistance-associa 45.7 9.9 0.00034 32.7 2.2 66 60-138 65-130 (175)
33 4f3j_A Complement C1Q tumor ne 44.2 13 0.00044 30.7 2.7 21 390-410 35-55 (148)
34 2dah_A Ubiquilin-3; UBA domain 42.6 31 0.001 23.3 3.9 26 105-130 23-48 (54)
35 1v92_A NSFL1 cofactor P47; 3-h 42.5 20 0.00069 22.9 3.0 24 105-128 19-42 (46)
36 1q02_A Sequestosome 1; helical 42.2 20 0.00068 24.0 2.8 26 103-128 23-48 (52)
37 2q3l_A Uncharacterized protein 41.6 75 0.0026 25.2 6.9 94 163-280 16-111 (126)
38 1wr1_B Ubiquitin-like protein 41.4 25 0.00087 24.1 3.4 25 105-129 31-55 (58)
39 2wgn_B Inhibitor of cysteine p 40.9 1.4E+02 0.0048 24.0 8.9 81 326-416 33-116 (132)
40 2bwb_A Ubiquitin-like protein 40.9 25 0.00086 22.8 3.2 24 105-128 21-44 (46)
41 2dna_A Unnamed protein product 40.5 34 0.0012 24.3 4.0 27 104-130 32-58 (67)
42 4dzg_A PLIG; lysozyme inhibito 39.2 42 0.0014 26.4 4.9 88 331-427 23-112 (114)
43 3itf_A Periplasmic adaptor pro 38.6 89 0.003 25.7 7.0 60 61-136 44-103 (145)
44 2lu7_A Obscurin-like protein 1 38.3 43 0.0015 24.2 4.7 29 327-355 3-31 (84)
45 1nqj_A Class 1 collagenase; be 36.6 1.6E+02 0.0054 23.3 9.9 32 392-428 88-119 (119)
46 4dou_A Adiponectin; single-cha 35.2 25 0.00087 34.8 3.7 22 390-411 57-78 (442)
47 1wji_A Tudor domain containing 33.7 51 0.0017 22.9 4.0 26 105-130 22-47 (63)
48 1ify_A HHR23A, UV excision rep 33.6 41 0.0014 22.1 3.3 26 104-129 20-45 (49)
49 3o39_A Periplasmic protein rel 33.3 82 0.0028 24.5 5.6 58 61-134 16-73 (108)
50 1j3a_A 50S ribosomal protein L 32.8 59 0.002 26.7 4.9 32 223-262 2-33 (142)
51 4dou_A Adiponectin; single-cha 32.6 24 0.00081 35.0 2.9 22 391-412 199-220 (442)
52 2qsf_X RAD23, UV excision repa 32.3 80 0.0027 26.8 5.8 44 60-128 123-166 (171)
53 3e21_A HFAF1, FAS-associated f 31.9 32 0.0011 22.3 2.5 20 107-126 22-41 (45)
54 1vq8_J 50S ribosomal protein L 31.6 63 0.0022 26.6 4.9 33 222-262 9-41 (145)
55 2jy5_A Ubiquilin-1; UBA, alter 31.0 43 0.0015 22.3 3.2 24 105-128 26-49 (52)
56 2dzl_A Protein FAM100B; UBA-li 30.8 45 0.0015 23.5 3.4 23 105-127 31-53 (66)
57 2g3q_A Protein YBL047C; endocy 29.6 52 0.0018 20.7 3.3 25 105-129 17-41 (43)
58 3jqw_A COLH protein, collagena 27.3 2.3E+02 0.0078 22.3 9.1 34 392-428 84-117 (121)
59 2dae_A KIAA0733 protein; mitog 27.2 1E+02 0.0035 22.0 4.6 39 68-129 11-49 (75)
60 1veg_A NEDD8 ultimate buster-1 27.2 72 0.0025 23.6 4.1 27 104-130 41-67 (83)
61 2cwb_A Chimera of immunoglobul 26.9 56 0.0019 25.5 3.6 26 104-129 79-104 (108)
62 4b6a_O 60S ribosomal protein L 26.3 93 0.0032 27.1 5.3 33 222-262 6-38 (199)
63 3dct_B Nuclear receptor coacti 25.5 42 0.0014 17.6 1.7 14 104-117 3-16 (21)
64 1vg5_A RSGI RUH-014, rhomboid 25.3 60 0.0021 23.4 3.3 26 104-129 41-66 (73)
65 3oeo_A Spheroplast protein Y; 25.2 1.1E+02 0.0036 24.9 5.2 56 61-132 32-87 (138)
66 3r9z_A WHY2 protein; stwhy2, s 24.1 46 0.0016 28.4 2.8 32 394-426 38-74 (178)
67 4a17_I RPL13A, 60S ribosomal p 23.9 96 0.0033 27.0 4.9 33 222-262 5-37 (198)
68 2dak_A Ubiquitin carboxyl-term 23.1 95 0.0033 21.4 3.9 27 105-131 22-48 (63)
69 4dbg_B Ring finger protein 31; 22.8 99 0.0034 25.8 4.5 30 102-131 113-142 (162)
70 1l3a_A PBF-2, P24: plant trans 22.6 1.2E+02 0.004 26.9 5.1 32 394-426 65-101 (227)
71 2cp8_A NEXT to BRCA1 gene 1 pr 21.3 1.2E+02 0.004 20.5 3.8 27 103-129 21-47 (54)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=2.1e-71 Score=561.56 Aligned_cols=349 Identities=25% Similarity=0.413 Sum_probs=300.0
Q ss_pred cCcCCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014036 57 SYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (432)
Q Consensus 57 ~~~l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~ 136 (432)
++++++|+++|+++|++||+++++... ++ +..+|.+|+||||||+||+++|.+||+++++||++
T Consensus 2 ~g~~~~l~~~q~~~l~~lr~~l~~~~~-------------~l---~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~ 65 (403)
T 1olm_A 2 SGRVGDLSPRQKEALAKFRENVQDVLP-------------AL---PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQ 65 (403)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHHGGGGG-------------GS---SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhcc-------------CC---CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999998742 23 35789999999999999999999999999999999
Q ss_pred hCCCCCcccCCChhhhccc-eeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccC-
Q 014036 137 FGADGIVEEDLGFKELEGV-VAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFK- 214 (432)
Q Consensus 137 ~~~d~i~~~~~~~~~l~~~-~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~- 214 (432)
++++++.....+ +.+..+ ..+++|+|++||||+++++|++|++++++.. +.+++++++++++|.+++.+..+
T Consensus 66 ~~~~~i~~~~~~-~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s 139 (403)
T 1olm_A 66 KDIDNIISWQPP-EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQT 139 (403)
T ss_dssp TTGGGGGGSCCC-HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccCCH-HHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999887763333 444432 2467999999999999999999998876532 24889999999999998876432
Q ss_pred ---CCCeeeEEEEEeCCCCCchhH----HHHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEE
Q 014036 215 ---PGGVNSIIQVTDLKDMPKREL----RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVI 287 (432)
Q Consensus 215 ---~~~~~~iv~IiDl~g~s~~~~----~~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~ 287 (432)
..++.++++|+||+|++++++ ...++.++.++|+||||||+++||||+|++|+++|+++||||+++|++||+|
T Consensus 140 ~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~ 219 (403)
T 1olm_A 140 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMV 219 (403)
T ss_dssp HHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEE
T ss_pred HhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEE
Confidence 225789999999999999876 3578999999999999999999999999999999999999999999999999
Q ss_pred ecCCccHHHHhcccCCCCCcccCCCCCCCCC--CC------CCCCCC------------Cc-ceeeeCCceEEEEEeeeC
Q 014036 288 SKEGNVAETLYKFVRPEDIPVQYGGLSRPSD--LN------HGPPKP------------AS-EFTVKGGEKVNIQIEGIE 346 (432)
Q Consensus 288 ~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~d--~~------~g~~~~------------~~-~~~V~~g~~~~v~i~v~~ 346 (432)
++ +++.+.|.++||+++||++|||++.+.+ |. .|+++| .. .++|+||++++|+|+|.+
T Consensus 220 ~~-~~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~ 298 (403)
T 1olm_A 220 LG-ANWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILF 298 (403)
T ss_dssp CC-TTHHHHHTTTSCGGGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECS
T ss_pred EC-hhHHHHHHhhcChhhCchhhCCCcCCCCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcC
Confidence 97 3778899999999999999999998653 32 344332 33 499999999999999998
Q ss_pred CCcEEEEEEEecCCCeEEEEEEeeCC-----CCceEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEeCCCcc--cccc
Q 014036 347 AGATITWDIVVGGWDLEYSAEFVPNA-----EGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVDNSSSR--RRKV 419 (432)
Q Consensus 347 ~g~~l~W~f~t~~~DI~F~v~~~~~~-----~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fdNs~S~--~kk~ 419 (432)
+|++|.|+|+|+++||+|||+|.++. .++++++++ ..|+.||.++++|+++|++||+|+|+|||+||| +|+|
T Consensus 299 ~g~~l~W~f~~~~~DI~F~v~~~~~~~~~~~~~~~~~v~p-~~r~~~~~~~~~G~~~~~~~G~y~l~fdNs~S~~~~k~l 377 (403)
T 1olm_A 299 PGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLP-NQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKV 377 (403)
T ss_dssp TTCEEEEEEEESSSCEEEEEEEC----CCCCGGGSEEEEE-EEEECTTTSCEEEEEECCSCEEEEEEEECTTCCCCSEEE
T ss_pred CCCEEEEEEEecCCcEEEEEEEecccccccCCCcceEEee-eeeecCccccccCEEEcCCCeEEEEEEeccccceeceEE
Confidence 99999999999999999999998532 245677776 899999999999999999999999999999996 5666
Q ss_pred eEEEEEEecCC
Q 014036 420 AAYRYIVRKSS 430 (432)
Q Consensus 420 ~~Y~~~v~~~~ 430 (432)
.|++.|.+|+
T Consensus 378 -~y~v~v~~~~ 387 (403)
T 1olm_A 378 -NFTVEVLLPD 387 (403)
T ss_dssp -EEEEEEECCC
T ss_pred -EEEEEEeCCc
Confidence 9999999886
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=5.6e-48 Score=377.29 Aligned_cols=245 Identities=27% Similarity=0.387 Sum_probs=207.9
Q ss_pred CccccCcCCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 014036 53 FKEDSYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLA 132 (432)
Q Consensus 53 ~~~~~~~l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~ 132 (432)
.+..++++++|+++|+++|++||++|++.... ...+|.+|+||||||+||+++|.+||+++++
T Consensus 25 ~~~~~g~~~~lt~~q~~~l~~lR~~l~~~~~~-----------------~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~ 87 (320)
T 3q8g_A 25 PNALPGTPGNLTKEQEEALLQFRSILLEKNYK-----------------ERLDDSTLLRFLRARKFDINASVEMFVETER 87 (320)
T ss_dssp TTSCTTSTTCCCHHHHHHHHHHHHHHHHTTCC-----------------SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCC-----------------CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999999988421 5678999999999999999999999999999
Q ss_pred HHHHhCCCCCcccC-CC-------hhhh-ccceeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHH
Q 014036 133 WRKEFGADGIVEED-LG-------FKEL-EGVVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQV 203 (432)
Q Consensus 133 wR~~~~~d~i~~~~-~~-------~~~l-~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (432)
||+++++|++.... .. .+.+ +.+..+++|+|++||||+|+++|++|.+++++.. + .+++++++++.
T Consensus 88 WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~--~---~~~~lr~lv~~ 162 (320)
T 3q8g_A 88 WREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKIT--T---EKQMLRNLVKE 162 (320)
T ss_dssp HHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHC--C---HHHHHHHHHHH
T ss_pred HHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccC--C---HHHHHHHHHHH
Confidence 99999998876421 11 0122 2334688999999999999999999998876532 2 37889999999
Q ss_pred HHHHHHhhc----cC-CCCeeeEEEEEeCCCCCchhHH---HHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhcc
Q 014036 204 LERGINLLH----FK-PGGVNSIIQVTDLKDMPKRELR---VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSP 275 (432)
Q Consensus 204 ~E~~~~~~~----~~-~~~~~~iv~IiDl~g~s~~~~~---~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkp 275 (432)
+|.+++... .. ...++++++|+|++|++++++. ..++.++.++|++||+||+++||||+|++|+++|+++||
T Consensus 163 ~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikp 242 (320)
T 3q8g_A 163 YELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKP 242 (320)
T ss_dssp HHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGG
T ss_pred HHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHH
Confidence 998764311 11 1246889999999999998874 578999999999999999999999999999999999999
Q ss_pred CCCccccceEEEecCCccHHHHhcccCCCCCcccCCCCCCCCCCC
Q 014036 276 FLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLN 320 (432)
Q Consensus 276 fL~~~t~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~d~~ 320 (432)
||+++|++||+|++ +++.++|.++||+++||++|||++++.+++
T Consensus 243 fl~~~t~~KI~~~~-~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~ 286 (320)
T 3q8g_A 243 FLDPVTVSKIFILG-SSYKKELLKQIPIENLPVKYGGTSVLHNPN 286 (320)
T ss_dssp GSCHHHHHTEEECC-TTHHHHHHHHSCGGGSBGGGTSCBCCSSTT
T ss_pred hCCHHHhhhEEEeC-CCcHHHHHhhCChhhCChhhCCCCCCCCCC
Confidence 99999999999997 467899999999999999999999987654
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=5.7e-47 Score=367.41 Aligned_cols=245 Identities=28% Similarity=0.414 Sum_probs=207.2
Q ss_pred cccCcCCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014036 55 EDSYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWR 134 (432)
Q Consensus 55 ~~~~~l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR 134 (432)
..++++++|+++|+++|++||+++++... + ...+|.+|+||||||+||+++|.+||+++++||
T Consensus 18 ~~~~~~~~l~~~q~~~l~~lr~~l~~~~~---------------~--~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR 80 (296)
T 1aua_A 18 ALPGTPGNLDSAQEKALAELRKLLEDAGF---------------I--ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWR 80 (296)
T ss_dssp SCTTSTTTCCTTHHHHHHHHHHHHHHTTC---------------C--SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhcCC---------------C--CCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998742 1 567899999999999999999999999999999
Q ss_pred HHhCCCCCcccC-CC-hhhhccc-eeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhh
Q 014036 135 KEFGADGIVEED-LG-FKELEGV-VAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLL 211 (432)
Q Consensus 135 ~~~~~d~i~~~~-~~-~~~l~~~-~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~ 211 (432)
++++++++.... .. .+.+.++ ..+++|+|++||||+|+++|++|.+++++.. +.+++++++++.+|.+++.+
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~-----~~~~~~~~~~~~~E~~~~~~ 155 (296)
T 1aua_A 81 KDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVT-----SEERMLKNLVWEYESVVQYR 155 (296)
T ss_dssp HHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTC-----CHHHHHHHHHHHHHHHHHTH
T ss_pred HHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccC-----CHHHHHHHHHHHHHHHHHHH
Confidence 999988776432 11 1233333 3478999999999999999999988765321 24789999999999877542
Q ss_pred c----c-CCCCeeeEEEEEeCCCCCchhHH---HHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccc
Q 014036 212 H----F-KPGGVNSIIQVTDLKDMPKRELR---VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKS 283 (432)
Q Consensus 212 ~----~-~~~~~~~iv~IiDl~g~s~~~~~---~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~ 283 (432)
. . ....++++++|+|++|++++++. .+++.++.++|+|||+||+++||||+|++|+++|+++||||+++|++
T Consensus 156 ~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~ 235 (296)
T 1aua_A 156 LPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVS 235 (296)
T ss_dssp HHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHT
T ss_pred HHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcc
Confidence 1 0 12347899999999999998874 57899999999999999999999999999999999999999999999
Q ss_pred eEEEecCCccHHHHhcccCCCCCcccCCCCCCCCCCCCC
Q 014036 284 KFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLNHG 322 (432)
Q Consensus 284 KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~d~~~g 322 (432)
||+|++ +++.+.|.++||+++||++|||++++.+++.|
T Consensus 236 KI~~~~-~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~g 273 (296)
T 1aua_A 236 KIFILG-SSYQKELLKQIPAENLPVKFGGKSEVDESKGG 273 (296)
T ss_dssp TEEECC-SCCHHHHTTTSCSSSSBGGGTSCBCCCGGGCC
T ss_pred eEEEeC-cccHHHHHhhCCHhhCcHHhCCCCCCCCCCCC
Confidence 999998 46789999999999999999999998764433
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.4e-44 Score=341.83 Aligned_cols=227 Identities=23% Similarity=0.353 Sum_probs=185.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-C
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFG-A 139 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~~~-~ 139 (432)
++||+.|+++|++||+++++... ++++ ...+|.+|+||||||+||+++|.+||+++++||++++ +
T Consensus 2 ~~ls~~~~~~l~~lr~~l~~~~~------------~~~~--~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i 67 (262)
T 1r5l_A 2 SHMSPLLQPGLAALRRRAREAGV------------PLAP--LPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI 67 (262)
T ss_dssp -------CTTHHHHHHHHHHHTC------------CCSS--SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCccHHHHHHHHHHHHHHHhCCc------------ccCC--CCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHh
Confidence 47899999999999999998853 2233 5679999999999999999999999999999999975 1
Q ss_pred -CCCcccCCChhhhc-cceeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 014036 140 -DGIVEEDLGFKELE-GVVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGG 217 (432)
Q Consensus 140 -d~i~~~~~~~~~l~-~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 217 (432)
+++...++. ..+. ++..+++|+|++||||+++++|++|++.. +..+++++.++.+|.+++.. ..+
T Consensus 68 ~~~~~~~~~~-~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~---------~~~~~~r~~~~~~E~~~~~~---~~~ 134 (262)
T 1r5l_A 68 SADLHPRSII-GLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF---------TAYDVFRVSLITSELIVQEV---ETQ 134 (262)
T ss_dssp HSCCCGGGTH-HHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTS---------CHHHHHHHHHHHHHHHTTSH---HHH
T ss_pred hhcCChHHHH-HHHHcCCccCCCCcCCCCCEEEEEeccccCcccC---------CHHHHHHHHHHHHHHHHhCh---hhc
Confidence 222222222 2333 34457889999999999999999987653 12678999999999876433 234
Q ss_pred eeeEEEEEeCCCCCchhHH----HHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEecCCcc
Q 014036 218 VNSIIQVTDLKDMPKRELR----VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNV 293 (432)
Q Consensus 218 ~~~iv~IiDl~g~s~~~~~----~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~ 293 (432)
+.|+++|+|++|++++++. ..++.++.++|++||++++++||||+|++|+++|+++||||+++|++||+|++ +++
T Consensus 135 ~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~-~~~ 213 (262)
T 1r5l_A 135 RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG-NNY 213 (262)
T ss_dssp HHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC-SSC
T ss_pred ccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC-CCc
Confidence 6899999999999999873 67899999999999999999999999999999999999999999999999997 467
Q ss_pred HHHHhcccCCCCCcccCCCCCCC
Q 014036 294 AETLYKFVRPEDIPVQYGGLSRP 316 (432)
Q Consensus 294 ~~~L~~~i~~~~LP~~yGG~~~~ 316 (432)
.++|.++|+ ++||++|||++.+
T Consensus 214 ~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 214 KQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp HHHHHHHST-TTSCGGGTCSSCC
T ss_pred HHHHHHHhh-hhCcHhhCCCCCC
Confidence 899999999 9999999999853
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2e-43 Score=344.93 Aligned_cols=240 Identities=18% Similarity=0.391 Sum_probs=189.2
Q ss_pred CcCCCCCHHHHHHHHHHHHHHhhccCCCCCCcccc-cccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014036 58 YFVSQLKSSEKKALQELKNRLADSHNGSGENECSM-WGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (432)
Q Consensus 58 ~~l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~-~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~ 136 (432)
..|++.++.++++|++||+||+++... + ..+ |+++.- ....+|.+|+||||||+||+++|.+||+++++||++
T Consensus 49 ~eL~E~~~~~~~~l~~LR~wi~~~p~l-~---~~l~~~~~~~--~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~ 122 (316)
T 3hx3_A 49 DELNEREETREEAVRELQEMVQAQAAS-G---EELAVAVAER--VQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQ 122 (316)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTT-T---CHHHHHHHHH--TTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHhCCCc-c---cccccccccc--CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 347777888899999999999998531 0 000 000000 035799999999999999999999999999999999
Q ss_pred hCC--CCCcccCCChhhhc-cceeeeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 014036 137 FGA--DGIVEEDLGFKELE-GVVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHF 213 (432)
Q Consensus 137 ~~~--d~i~~~~~~~~~l~-~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~ 213 (432)
++. +++..+++. ..++ ++..+++|+|++||||+++++|++|++.. +.+++++++++++|.++...
T Consensus 123 ~~~~~~~~~~~~i~-~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~---------~~~~~~r~~~~~lE~~l~~~-- 190 (316)
T 3hx3_A 123 YPELFDSLSPEAVR-CTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI---------TFDEILQAYCFILEKLLENE-- 190 (316)
T ss_dssp CGGGTTTCCHHHHH-HHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS---------CHHHHHHHHHHHHHHHTTSH--
T ss_pred CchhhcCCCHHHHH-HHHHcCCccccCCCCCCCCEEEEEecccCCCCCC---------CHHHHHHHHHHHHHHHHhcc--
Confidence 872 233222222 2233 33457789999999999999999987653 23789999999999887432
Q ss_pred CCCCeeeEEEEEeCCCCCchhHH----HHHHHHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCccccceEEEec
Q 014036 214 KPGGVNSIIQVTDLKDMPKRELR----VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISK 289 (432)
Q Consensus 214 ~~~~~~~iv~IiDl~g~s~~~~~----~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~t~~KI~~~~ 289 (432)
..+++|+++|+|++|++++|+. ..++.++.++|++||++++++||||+|++|.++|+++||||+++|++||+|++
T Consensus 191 -~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~ 269 (316)
T 3hx3_A 191 -ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269 (316)
T ss_dssp -HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred -cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC
Confidence 3457899999999999998873 57899999999999999999999999999999999999999999999999996
Q ss_pred CCccHHHHhcccCCCCCcccCCCCCCCCC
Q 014036 290 EGNVAETLYKFVRPEDIPVQYGGLSRPSD 318 (432)
Q Consensus 290 ~~~~~~~L~~~i~~~~LP~~yGG~~~~~d 318 (432)
++ .++|.++||+++||++|||++++.|
T Consensus 270 -~~-~~~L~~~I~~~~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 270 -DD-LSGFYQEIDENILPSDFGGTLPKYD 296 (316)
T ss_dssp -TC-CHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred -CC-HHHHHhhCCHhhCcHhhCCCCCCcC
Confidence 23 5799999999999999999998654
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=98.94 E-value=6.5e-10 Score=104.27 Aligned_cols=128 Identities=13% Similarity=0.131 Sum_probs=99.4
Q ss_pred eeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCchhH--
Q 014036 158 YMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL-- 235 (432)
Q Consensus 158 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~~~~-- 235 (432)
|-.|.|++||||+++..++++...+ +++.++.+.+..++... ...+.+|+|++|++..+.
T Consensus 14 y~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~---------~~~y~lV~d~T~~~~~n~p~ 75 (256)
T 3pg7_A 14 YQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSNRFK 75 (256)
T ss_dssp EEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGGCCC
T ss_pred EEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEECCCCCcccCCc
Confidence 5568999999999999999876432 23555555555554332 256899999999997543
Q ss_pred HHHHHHHHHHHhhccccccceEEEEeCchhHHHHHhh-hccCCCccccceEEEecCCccHHHHhcccCCCCC
Q 014036 236 RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSM-FSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDI 306 (432)
Q Consensus 236 ~~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~l-vkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~L 306 (432)
.+.++.+..++-..|...++++||+|++++|...++. .++|.+.+..+|+++++ ..++|.++|+.++|
T Consensus 76 ~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~---sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 76 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID---CPGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES---STTGGGGTSCGGGC
T ss_pred HHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC---CHHHHHhhcCHHHc
Confidence 5678999999999999999999999999999976655 46666668888999995 57889999976554
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.66 E-value=1.5e-08 Score=96.42 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=90.2
Q ss_pred eeeccCCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCeeeEEEEEeCCCCCchhH--
Q 014036 158 YMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL-- 235 (432)
Q Consensus 158 ~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~iv~IiDl~g~s~~~~-- 235 (432)
+-.|.|++|+||+++..++++...+ +++.++.+++..++..+ ...+.+|+|+++++..+-
T Consensus 33 ~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~---------~~~y~lV~D~T~~~~~n~p~ 94 (290)
T 3peg_A 33 YQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSNRFK 94 (290)
T ss_dssp EEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGGCCC
T ss_pred EEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEEcCCCCccCCCh
Confidence 4558899999999999999875432 12444444444443222 257899999999997543
Q ss_pred HHHHHHHHHHHhhccccccceEEEEeCchhHHHHH-hhhccCCCccccceEEEecCCccHHHHhcccCCCC
Q 014036 236 RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLY-SMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPED 305 (432)
Q Consensus 236 ~~~~k~~~~~lq~~YPe~l~~i~iINaP~~f~~~~-~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~ 305 (432)
.+.++.+..++...|...++++||+|++++|...+ ...+++.+.+..+|+.++.. ...|..++++++
T Consensus 95 ~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~ 162 (290)
T 3peg_A 95 TDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQ 162 (290)
T ss_dssp HHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC---------
T ss_pred HHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHH
Confidence 57889999999999999999999999999998754 57788888888999999852 344888887764
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=83.63 E-value=2.2 Score=29.75 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
..+...+..-|+++++|++.|+.+|.+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 557889999999999999999999864
No 9
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.14 E-value=7.4 Score=27.71 Aligned_cols=46 Identities=7% Similarity=0.045 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
..|+..+.++|.+|...-. ..+......||..++||++.|+..+-+
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg-----------------------~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG-----------------------IESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC-----------------------CSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhC-----------------------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4789999999888887553 123567889999999999999987643
No 10
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=77.09 E-value=26 Score=27.94 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=59.1
Q ss_pred CCcceeeeCCceEEEEEeeeCCCcEEEEEEEecC------CCeEEEEEEeeCCCCc-eEEEeeCceeeCCCCcccccEEE
Q 014036 326 PASEFTVKGGEKVNIQIEGIEAGATITWDIVVGG------WDLEYSAEFVPNAEGS-YTIAVEKPRKISPSEEAIRNSFT 398 (432)
Q Consensus 326 ~~~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~------~DI~F~v~~~~~~~~~-~~~~v~~~~r~~~~~~~~~g~~~ 398 (432)
.-+.++++.|+...|.++ ..|+.-..|.+.... +=+..+-.|.+...++ ... ++...+.+ --...-.|+
T Consensus 11 n~~ti~l~~Ge~~~I~L~-~NPtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~--~~~~~vG~-gG~~~~~fk 86 (121)
T 2cio_B 11 NNKTIRMVIGETFTIELE-SNPTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKN--HRRLLVGA-GGTMVLEVK 86 (121)
T ss_pred CCcEEEEcCCCEEEEEeC-CCCCCCeEEEEecCccccCCCccEEEeeeEEcCCCCccccc--ccccEeCC-CceEEEEEE
Confidence 345689999999998887 445677899998732 1144434454432211 000 01112222 123467899
Q ss_pred eCcCcEEEEEEeCCCccccc---ceEEEEEE
Q 014036 399 SKEAGKLVLSVDNSSSRRRK---VAAYRYIV 426 (432)
Q Consensus 399 ~~~~G~y~l~fdNs~S~~kk---~~~Y~~~v 426 (432)
+.++|++.|.|....+|.+. .-.|.+.|
T Consensus 87 a~~~G~~~i~~~Y~RpWe~~~~~~~~f~~~V 117 (121)
T 2cio_B 87 ALKAGKHTLSLAYGRPWVGFNAAAKRYNIHV 117 (121)
T ss_pred EecCceEEEEEEEECccCCCCCcceEEEEEE
Confidence 99999999999999998422 12465555
No 11
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=76.72 E-value=10 Score=28.11 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 62 QLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 62 ~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
+|++.+++.|..=-+.|.+... +...|..|.+-....+||+++|...+-+-
T Consensus 25 ~Ls~~d~arL~SCLd~iR~VlG------------------dsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 25 QLSEIDQARLYSCLDHMREVLG------------------DAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTT------------------TTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHc------------------ccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 5888888776666566655532 45678889999999999999999987653
No 12
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.32 E-value=12 Score=26.07 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=36.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 59 FVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 59 ~l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
.+..|++.+.+.+.+|...-. .++.....||.+.+||++.|+..+-
T Consensus 7 ~~~~~s~~~~e~i~qF~~iTg------------------------~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 7 GGSAASSALKGLIQQFTTITG------------------------ASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CCCSSCHHHHHHHHHHHHHTC------------------------CCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred chhhcCccHHHHHHHHHHHhC------------------------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356788899888888875321 2367789999999999999998763
No 13
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.14 E-value=7 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.064 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
..+...+..-|+++++|++.|++.|.+.
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4567889999999999999999988654
No 14
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=72.12 E-value=32 Score=26.96 Aligned_cols=92 Identities=10% Similarity=0.204 Sum_probs=56.8
Q ss_pred CCcceeeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEE-EeeCCCCceEEEeeCceeeCCCCcccccEEEeCcCcE
Q 014036 326 PASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAE-FVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGK 404 (432)
Q Consensus 326 ~~~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~-~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~ 404 (432)
.-+.++++.|+...|.++- .+.+=..|.+...+.-+...-. |.... .....+.+ --...-.|++.++|+
T Consensus 14 ~g~~I~v~~Ge~~~I~L~~-NptTGY~W~~~~~~~~~~l~~~~~~~~p--------~~~~~vG~-gG~~~~~f~a~~~G~ 83 (111)
T 3m86_A 14 DHATLHISFNDLIKIQLRT-NPSTGYAWNIEYPTDTFSLSQDTIKAEP--------HPSGMVGF-PSIREIQLKPLKVGT 83 (111)
T ss_dssp TTCEEEECTTCEEEEEEEE-CGGGTCEEEEECCTTTEEEEEEEEEECC--------CSTTTSSC-SEEEEEEEEESSCEE
T ss_pred CCcEEEEcCCCEEEEEECC-CCCCCeEEEEecCCCcEEEcccceEeCC--------CCCCCCCC-CeeEEEEEEEeCCeE
Confidence 3467999999999999974 4566689999876432322111 11100 00112222 112356799999999
Q ss_pred EEEEEeCCCcccc-----cceEEEEEEe
Q 014036 405 LVLSVDNSSSRRR-----KVAAYRYIVR 427 (432)
Q Consensus 405 y~l~fdNs~S~~k-----k~~~Y~~~v~ 427 (432)
..|.|....+|-+ +.+.|.|.|+
T Consensus 84 ~~i~~~Y~RpWe~~~~~~~tf~~~V~V~ 111 (111)
T 3m86_A 84 TTIKLGYSRPWEKGKEPLRSLTYSVVIR 111 (111)
T ss_dssp EEEEEEEECTTCCSCCCSEEEEEEEEEC
T ss_pred EEEEEEEECccCCCCCcccEEEEEEEEC
Confidence 9999999999842 2236666653
No 15
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=68.56 E-value=18 Score=28.36 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=47.3
Q ss_pred eeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEe
Q 014036 331 TVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 331 ~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fd 410 (432)
+|.++......+... +|.+|.-.+.. .+..|-++ .|........ . .. .+...-.++.+.|+.|+|.|..-
T Consensus 21 ~I~g~~~~~Y~~~a~-aGQ~l~v~l~s--~~~~~~i~-~pg~~~~~~~--~---~~-~~~~~~~~~~~LP~sG~Y~I~V~ 90 (111)
T 4g9s_B 21 EIKGYDYDTYTFYAK-KGQKVHVSISN--EGADTYLF-GPGIDDSVDL--S---RY-SPELDSHGQYSLPASGKYELRVL 90 (111)
T ss_dssp EEETTCCEEEEEEEC-TTCEEEEEESC--TTCEEEEE-CTTCSSCEEC--S---TT-CTTCCTTSCEECSSSEEEEEEEE
T ss_pred EEeCCCceEEEEEec-CCCEEEEEEec--CCccEEEE-CCCCcccccc--c---cc-cccCCceEEEEecCCccEEEEEE
Confidence 466666666666654 47776555543 34555542 2222211100 0 00 11112256788999999999875
Q ss_pred ---CCCcccccceEEEEEEe
Q 014036 411 ---NSSSRRRKVAAYRYIVR 427 (432)
Q Consensus 411 ---Ns~S~~kk~~~Y~~~v~ 427 (432)
|.+.+.++. .|++.|.
T Consensus 91 ~~r~~ar~~~~~-~Y~L~v~ 109 (111)
T 4g9s_B 91 QTRNDARKNKTK-KYNVDIQ 109 (111)
T ss_dssp CCHHHHHTTCEE-EEEEEEE
T ss_pred eccchhccCCCc-CEEEEEE
Confidence 433355666 8988874
No 16
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=67.43 E-value=3.4 Score=33.79 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=19.6
Q ss_pred CCcccccEEEeCcCcEEEEEEeC
Q 014036 389 SEEAIRNSFTSKEAGKLVLSVDN 411 (432)
Q Consensus 389 ~~~~~~g~~~~~~~G~y~l~fdN 411 (432)
+-.+..|.|+|+.||+|.+.|-=
T Consensus 32 ~yn~~TG~Ftap~~G~Y~Fs~~~ 54 (134)
T 2wnv_A 32 PYQNHSGRFVCTVPGYYYFTFQV 54 (134)
T ss_dssp CEETTTTEEECCSCEEEEEEEEE
T ss_pred CccCCCCEEECeeCCEEEEEEEE
Confidence 34577999999999999999953
No 17
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=67.28 E-value=3.2 Score=33.85 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.8
Q ss_pred CcccccEEEeCcCcEEEEEEe
Q 014036 390 EEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 390 ~~~~~g~~~~~~~G~y~l~fd 410 (432)
-.+..|.|+|+.+|+|.+.|.
T Consensus 37 yn~~TG~Ftap~~G~Y~Fs~~ 57 (131)
T 2wnv_C 37 YDTSTGKFTCKVPGLYYFVYH 57 (131)
T ss_dssp EETTTTEEECSSCEEEEEEEE
T ss_pred ccCCCCEEEcccCCEEEEEEE
Confidence 447799999999999999996
No 18
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=67.25 E-value=3.2 Score=34.12 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.2
Q ss_pred CCcccccEEEeCcCcEEEEEEe
Q 014036 389 SEEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 389 ~~~~~~g~~~~~~~G~y~l~fd 410 (432)
+-.+..|.|+|+.+|+|.+.|.
T Consensus 35 ~yn~~TG~Ftap~~G~Y~Fs~~ 56 (136)
T 2wnv_B 35 NYEPRSGKFTCKVPGLYYFTYH 56 (136)
T ss_dssp CEETTTTEEECSSCEEEEEEEE
T ss_pred cccCCCCEEECCcCeEEEEEEE
Confidence 3457799999999999999996
No 19
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=66.94 E-value=4.4 Score=34.35 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.2
Q ss_pred CcccccEEEeCcCcEEEEEEeC
Q 014036 390 EEAIRNSFTSKEAGKLVLSVDN 411 (432)
Q Consensus 390 ~~~~~g~~~~~~~G~y~l~fdN 411 (432)
-.+..|.|+|+.+|+|.+.|.=
T Consensus 62 yn~~TG~FtaPv~GvY~Fsft~ 83 (160)
T 1gr3_A 62 YDPRTGIFTCQIPGIYYFSYHV 83 (160)
T ss_dssp EETTTTEEECSSCEEEEEEEEE
T ss_pred eeCCCCEEEcccCCEEEEEEEE
Confidence 4467999999999999999973
No 20
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=65.29 E-value=3.5 Score=35.02 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=18.9
Q ss_pred CCcccccEEEeCcCcEEEEEEe
Q 014036 389 SEEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 389 ~~~~~~g~~~~~~~G~y~l~fd 410 (432)
+-.+..|.|+|+.+|+|.+.|.
T Consensus 45 ~yn~~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 45 YYDPETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp CEETTTTEEECCCCEEEEEEEC
T ss_pred ceECCCCEEECCCCeEEEEEEE
Confidence 3457799999999999999993
No 21
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=63.05 E-value=44 Score=27.05 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=56.2
Q ss_pred CCcceeeeCCceEEEEEeeeCCCcEEEEEEEecCCC------eEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEEEe
Q 014036 326 PASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWD------LEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTS 399 (432)
Q Consensus 326 ~~~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~D------I~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~ 399 (432)
..+.+.++.|+...|.++- .|.+=..|.+...++. +..+-.|.|.+.+ .+.+ --...-.|++
T Consensus 31 n~~~I~v~~Ge~~~I~L~~-NPTTGY~W~~~~~~~~~L~~~~~~v~~~y~p~~~~----------~vGa-gG~~~w~f~A 98 (131)
T 2h7w_A 31 NGATLTVAVGELVEIQLPS-NPTTGFAWYFEGGTKESPNESMFTVENKYFPPDSK----------LLGA-GGTEHFHVTV 98 (131)
T ss_dssp TTCEEEECTTCEEEEEEEE-CGGGSCEEEBTTTBSSCSCTTTEEEEEEEECCTTC----------CTTC-CEEEEEEEEE
T ss_pred CCCEEEEeCCCEEEEEeCC-CCCCCeEEEEecCCCccccccceeecceeeeCCCC----------CcCC-CcEEEEEEEE
Confidence 4468999999999999973 4556688999765431 1222223322111 1112 1123678999
Q ss_pred CcCcEEEEEEeCCCccccc---ceEEEEEE
Q 014036 400 KEAGKLVLSVDNSSSRRRK---VAAYRYIV 426 (432)
Q Consensus 400 ~~~G~y~l~fdNs~S~~kk---~~~Y~~~v 426 (432)
.++|+..|.|....+|-+. .-.|.+.|
T Consensus 99 ~~~G~~~i~~~Y~RpWE~~~~~~~~f~l~V 128 (131)
T 2h7w_A 99 KAAGTHAVNLTYMRPWTGPSHDSERFIVYL 128 (131)
T ss_dssp CSSEEEEEEEEEECTTTCCCTTCEEEEEEE
T ss_pred ccCceEEEEEEEECccCCCCCccEEEEEEE
Confidence 9999999999999998422 12566655
No 22
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=61.07 E-value=5.7 Score=34.28 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.2
Q ss_pred CCcccccEEEeCcCcEEEEEEe
Q 014036 389 SEEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 389 ~~~~~~g~~~~~~~G~y~l~fd 410 (432)
+-.+..|.|+|+.+|+|.+.|.
T Consensus 79 ~Yn~~TG~FTaPv~GvY~Fsft 100 (178)
T 1o91_A 79 NYNPQTGIFTCEVPGVYYFAYH 100 (178)
T ss_dssp CEETTTTEEECCSCEEEEEEEE
T ss_pred ceeCCCCEEEcccCeEEEEEEE
Confidence 3446799999999999999997
No 23
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=60.40 E-value=21 Score=25.65 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=24.4
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
+..+.++.+.|..++.|++.++..|-+
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 578999999999999999999998754
No 24
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=59.58 E-value=38 Score=23.32 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 62 QLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 62 ~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
-|++.+++.+.+|.+.- ..+-.+-.++|...+||.++|.+.+.+.
T Consensus 2 ~ls~~q~~mv~~~s~~T------------------------gmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 2 TLSPEQQEMLQAFSTQS------------------------GMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCCHHHHHHHHHHHHHH------------------------CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 37788887777776532 3456789999999999999999987654
No 25
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=59.55 E-value=16 Score=24.26 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=23.2
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
..+-..+-+-|+++++|+++|..+|.+.
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3456778889999999999999998653
No 26
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=59.48 E-value=34 Score=24.82 Aligned_cols=25 Identities=24% Similarity=0.103 Sum_probs=21.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
++...++-|++.++|+++|++.|..
T Consensus 43 dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 43 NRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566789999999999999998754
No 27
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=53.73 E-value=49 Score=22.59 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 62 QLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 62 ~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
.|++.|++.+.+|...- ..+-.+-.++|...+||.++|...+.+
T Consensus 1 ~l~~~q~~mv~~~s~~T------------------------~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 1 RLNPVQLELLNKLHLET------------------------KLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp CCCHHHHHHHHHHHHHH------------------------CSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------------------------CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 37788887777776532 345678899999999999999999877
No 28
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.98 E-value=28 Score=24.20 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 60 l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
|..|++.|.++|+.|-.. -+++....|=|++.+.|+++|++=|-.+
T Consensus 12 l~~ls~se~e~V~~LvsM-------------------------GFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNM-------------------------GYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHTCCHHHHHHHHHHHHH-------------------------HCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHhhCcchHHHHHHHHHc-------------------------CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 567889999988877541 2467889999999999999999876554
No 29
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=49.10 E-value=94 Score=24.36 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=55.3
Q ss_pred CCCcceeeeCCceEEEEEeeeCCCcEEEEEEEe-------cCCCeEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEE
Q 014036 325 KPASEFTVKGGEKVNIQIEGIEAGATITWDIVV-------GGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSF 397 (432)
Q Consensus 325 ~~~~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t-------~~~DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~ 397 (432)
+..+.++++.|+...|.++ ..|.+=..|.+.. .+.-+...-.|.++..+ ...+.+ --...-.|
T Consensus 12 d~~~~i~~~~Ge~~~I~L~-~NPtTGY~W~~~~~~~~~~l~~~gl~~~s~y~~~~~~--------~~~vG~-gG~~~~~f 81 (116)
T 2c34_A 12 DNDKWVDTHVGKTTEIHLK-GNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSS--------TPMVGV-GGIYVVLV 81 (116)
T ss_dssp CCCCCEEECSSCCEEEEEE-CCTTSSCEEEETTCTTSSCCCCSSEEEEEEEECCCCS--------SSSSCC-CCEEEEEE
T ss_pred cCCcEEEEcCCCEEEEEeC-CCCCCCcEEEEecCCCcccccccccEEEEeEEeCCCC--------CCCcCC-CceEEEEE
Confidence 3446799999999999987 3456668899974 11222222123321110 011111 11235789
Q ss_pred EeCcCcEEEEEEeCCCcccc---cceEEEEEE
Q 014036 398 TSKEAGKLVLSVDNSSSRRR---KVAAYRYIV 426 (432)
Q Consensus 398 ~~~~~G~y~l~fdNs~S~~k---k~~~Y~~~v 426 (432)
++.++|+..|.|....+|-+ ..-.|.++|
T Consensus 82 ~a~~~G~~~i~~~Y~R~We~~~~~~~~f~~~V 113 (116)
T 2c34_A 82 KPRKRGHHTLELVYTRPFEGIKPENERYTLHL 113 (116)
T ss_dssp EECSSSSEEEEEEEEBTTTBCCTTSCEEEEEE
T ss_pred EEeCCceEEEEEEEECccCCCCCccEEEEEEE
Confidence 99999999999999999843 212455554
No 30
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=48.03 E-value=20 Score=22.03 Aligned_cols=23 Identities=13% Similarity=-0.037 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNML 127 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l 127 (432)
+.....+-|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 34566889999999999998765
No 31
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=46.71 E-value=30 Score=23.17 Aligned_cols=25 Identities=16% Similarity=-0.044 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
+....++-|+++++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677889999999999999998864
No 32
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.66 E-value=9.9 Score=32.67 Aligned_cols=66 Identities=8% Similarity=0.009 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 014036 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFG 138 (432)
Q Consensus 60 l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~~~ 138 (432)
.-+||++|+++++++++...+.... ...++ ......|-.-+.+-++|.+++.+..++.-..|.+..
T Consensus 65 ~LnLT~EQq~ql~~I~~e~r~~~~~---Lr~ql----------~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 65 GSPLTTEQQATAQKIYDDYYTQTSA---LRQQL----------ISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999998877766421 00000 112244555667889999999999998888887644
No 33
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=44.21 E-value=13 Score=30.75 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.1
Q ss_pred CcccccEEEeCcCcEEEEEEe
Q 014036 390 EEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 390 ~~~~~g~~~~~~~G~y~l~fd 410 (432)
-.+..|.|+||.+|+|.+.|.
T Consensus 35 yn~sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 35 YDAVTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp EETTTTEEECCSCEEEEEEEE
T ss_pred ccCCCCeEECCcceEEEEEEE
Confidence 346689999999999999885
No 34
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.57 E-value=31 Score=23.29 Aligned_cols=26 Identities=19% Similarity=0.016 Sum_probs=21.5
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
++...++-|++.++|+++|++.|..+
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44556899999999999999988654
No 35
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=42.46 E-value=20 Score=22.91 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.7
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
+......||.+++||++.|+..+-
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467889999999999999998763
No 36
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=42.16 E-value=20 Score=23.99 Aligned_cols=26 Identities=8% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
...-.+|-|.|.+.++|+.+|...|.
T Consensus 23 ~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 23 SDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred CccccHHHHHHHHccCCHHHHHHHhh
Confidence 34557999999999999999998875
No 37
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=41.61 E-value=75 Score=25.19 Aligned_cols=94 Identities=12% Similarity=0.121 Sum_probs=58.1
Q ss_pred CCCCCeEEEEEcCccCchhhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCC--eeeEEEEEeCCCCCchhHHHHHH
Q 014036 163 DREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGG--VNSIIQVTDLKDMPKRELRVASN 240 (432)
Q Consensus 163 Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~--~~~iv~IiDl~g~s~~~~~~~~k 240 (432)
+..+..+.+.-.|.++. ++|-. +.-.+|..+. ..+. +.-++.+-|+.|+++..++.-++
T Consensus 16 ~~~~~vl~v~~~G~lt~--------------~d~~~-l~~~l~~~l~----~~~~~~i~ll~~~~~f~G~~~~a~~~d~k 76 (126)
T 2q3l_A 16 SQDDFYLAFKAVGKLTH--------------EDYEQ-MTPLLESALA----GIKTPEIVALIDITELDGLSLHAAWDDLK 76 (126)
T ss_dssp ETTEEEEEEEEEEEECH--------------HHHHH-HHHHHHHHTT----TCCSSCEEEEEEEEEEEEECHHHHHHHHH
T ss_pred cCCCCEEEEEEEeeECH--------------HHHHH-HHHHHHHHHH----hCCCceEEEEEEecCCCCCCHHHHHHHHH
Confidence 34445556655666542 34433 3445555442 1233 55555556677777666655444
Q ss_pred HHHHHHhhccccccceEEEEeCchhHHHHHhhhccCCCcc
Q 014036 241 QILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQR 280 (432)
Q Consensus 241 ~~~~~lq~~YPe~l~~i~iINaP~~f~~~~~lvkpfL~~~ 280 (432)
..+ .|. ..+.|+=||-.+.|...+-++.++|++-.
T Consensus 77 ~~~----~h~-~~~~RiAvV~d~~W~~~~~~~~~~~~~~e 111 (126)
T 2q3l_A 77 LGL----KHG-KEFKRVAIIGQGELQEWATRVANWFTPGE 111 (126)
T ss_dssp HHH----HHG-GGEEEEEEECCSHHHHHHHHHHHHHCSSE
T ss_pred hhh----hHH-hcCCEEEEEcChHHHHHHHHHHhhccCCc
Confidence 222 333 66889999999999999999999997653
No 38
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=41.35 E-value=25 Score=24.12 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=21.4
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
++...++-|++.++|+++|++.|..
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556789999999999999998865
No 39
>2wgn_B Inhibitor of cysteine peptidase compnd 3; hydrolase inhibitor, dynamics, peptidase inhibitor, cathepsi hydrolase inhibitor; NMR {Pseudomonas aeruginosa}
Probab=40.94 E-value=1.4e+02 Score=24.01 Aligned_cols=81 Identities=9% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCcceeeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEEEeeCCCCceEEEeeC---ceeeCCCCcccccEEEeCcC
Q 014036 326 PASEFTVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEK---PRKISPSEEAIRNSFTSKEA 402 (432)
Q Consensus 326 ~~~~~~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~~~~~~~~~~~~~v~~---~~r~~~~~~~~~g~~~~~~~ 402 (432)
..+.++++.|+...|.++ ..|.+=..|.+...+..+- ... .++.+ .++ ...+.+ --...-.|++.++
T Consensus 33 ~g~tI~v~~Ge~~~I~L~-~NPTTGY~W~~~~~~~~vl---~~l--~~~~y---~~~~~~~~~vGa-gG~~~w~f~A~~~ 102 (132)
T 2wgn_B 33 DCSPLKLTQGQELVLTLP-SNPTTGFRWELRNPAASVL---KRL--GPEVY---SNSEEDSGLVGS-GGESTWRFRVAAS 102 (132)
T ss_dssp CCSCEEECTTCEEEEEEC-CCTTTSCEEEEEECCTTTE---EEC--CSCCS---CSSCSSCCCSSS-SCCEEEEEEECSC
T ss_pred CCcEEEEcCCCEEEEEeC-CCCCCCeEEEEecCCCceE---Eec--cccee---cCCCCccCCcCC-CceEEEEEEEcCC
Confidence 345799999999999987 3456668999987643321 000 01100 111 112222 1233678999999
Q ss_pred cEEEEEEeCCCccc
Q 014036 403 GKLVLSVDNSSSRR 416 (432)
Q Consensus 403 G~y~l~fdNs~S~~ 416 (432)
|++.|.|....+|.
T Consensus 103 G~~~i~~~Y~RpWE 116 (132)
T 2wgn_B 103 GDDRLELVYRRPWE 116 (132)
T ss_dssp EEEEEEEEEECTTS
T ss_pred ceEEEEEEEECccC
Confidence 99999999999984
No 40
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=40.90 E-value=25 Score=22.83 Aligned_cols=24 Identities=17% Similarity=-0.058 Sum_probs=20.3
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
++...++-|++.++|+++|++.|.
T Consensus 21 d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 21 DFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455678999999999999998874
No 41
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=40.49 E-value=34 Score=24.27 Aligned_cols=27 Identities=19% Similarity=-0.041 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
.++...+|-|++.++|+++|++.|..+
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345566999999999999999988653
No 42
>4dzg_A PLIG; lysozyme inhibitor, G-type lysozyme binding, hydrolase inhib; HET: MLY; 2.02A {Aeromonas hydrophila subsp}
Probab=39.23 E-value=42 Score=26.39 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=47.9
Q ss_pred eeeCCceEEEEEeeeCCCcEEEEEEEecCCCeEEEEEEeeCCCCceEEEeeCceeeCCCCcccccEEEeCcCcEEEEEEe
Q 014036 331 TVKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYTIAVEKPRKISPSEEAIRNSFTSKEAGKLVLSVD 410 (432)
Q Consensus 331 ~V~~g~~~~v~i~v~~~g~~l~W~f~t~~~DI~F~v~~~~~~~~~~~~~v~~~~r~~~~~~~~~g~~~~~~~G~y~l~fd 410 (432)
+|.++......+... +|..|.=.+ ..+.+.-|.|+ .|..+.. +.+. . .+....-..+-..|..|.|.|..-
T Consensus 23 ~I~g~~~~~Y~~~a~-aGQ~l~V~l-s~~~~~~f~I~-~P~~~~~--~~l~-~---g~~~~~~~~~g~LP~sG~Y~i~V~ 93 (114)
T 4dzg_A 23 SFTGYDTIHYTLVAX-AGQTMTVXI-GGSSNANFNVF-APGAQPG--QAEA-I---GRNDGDGQWQGALPASGXYLIQVY 93 (114)
T ss_dssp CCBTTCCEEEECCC--CCCEEEC-C-EESTTCEEEEE-CTTCCTT--TSCC-S---EECCTTSCCEEECSSCC-CEEEEE
T ss_pred EecCCCceEEEEEec-CCCEEEEEe-CCCCcEEEEEE-CCCCCcc--ccee-c---cccCCcceEEEEecCCCcEEEEEE
Confidence 356666666666654 478777777 55677888875 4433321 0001 1 010000123447899999999877
Q ss_pred CCCc--ccccceEEEEEEe
Q 014036 411 NSSS--RRRKVAAYRYIVR 427 (432)
Q Consensus 411 Ns~S--~~kk~~~Y~~~v~ 427 (432)
-... |..+.+.|.+.|.
T Consensus 94 ~~r~~ar~~~~~~Y~L~i~ 112 (114)
T 4dzg_A 94 QMRASARRGEQVPHSLAVS 112 (114)
T ss_dssp CCHHHHHTTCBCCEECEEE
T ss_pred eccchhccCCCCCeEEEEE
Confidence 6543 4333338988764
No 43
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=38.64 E-value=89 Score=25.72 Aligned_cols=60 Identities=10% Similarity=0.110 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR~~ 136 (432)
-+||++|++.|..|++........ . ......-+...+.+-+||-.++.+.+.+...-+.+
T Consensus 44 L~LTdeQkqqir~L~~~~r~~~~~-------------~---~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e 103 (145)
T 3itf_A 44 ISLTEHQRQQMRDLMQQARHEQPP-------------V---NVSELETMHRLVTAENFDENAVRAQAEKMANEQIA 103 (145)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSCC-------------C---CHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhh-------------c---cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 378999999999999988876432 0 11122346667778899998888888776655543
No 44
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=38.33 E-value=43 Score=24.16 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=23.5
Q ss_pred CcceeeeCCceEEEEEeeeCCCcEEEEEE
Q 014036 327 ASEFTVKGGEKVNIQIEGIEAGATITWDI 355 (432)
Q Consensus 327 ~~~~~V~~g~~~~v~i~v~~~g~~l~W~f 355 (432)
.+.+.+..|+...+...+..|.-.+.|..
T Consensus 3 lt~v~~~~G~~v~l~C~vs~p~p~v~W~k 31 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSGPGGPVRWYK 31 (84)
T ss_dssp CCCEEECTTSCEEEECCCSCCSTTCEEEE
T ss_pred CeEEEEecCCCEEEEEEECCCCcEEEEEE
Confidence 45788999999999998866666789965
No 45
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=36.57 E-value=1.6e+02 Score=23.30 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=24.2
Q ss_pred ccccEEEeCcCcEEEEEEeCCCcccccceEEEEEEec
Q 014036 392 AIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVRK 428 (432)
Q Consensus 392 ~~~g~~~~~~~G~y~l~fdNs~S~~kk~~~Y~~~v~~ 428 (432)
.+.|++.+. ||+|.|..... ...- .|.+.|++
T Consensus 88 ~~~~~~~~~-pGkYYl~Vy~y---~~~g-~Y~l~v~~ 119 (119)
T 1nqj_A 88 KVSNKVKLR-PGKYYLLVYKY---SGSG-NYELRVNK 119 (119)
T ss_dssp EEEEEEEEC-SEEEEEEEEEE---ESCE-EEEEEEEC
T ss_pred cEEEEEEcC-CcEEEEEEEEe---CCCc-eEEEEEeC
Confidence 457899887 99999988763 3455 88888764
No 46
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=35.22 E-value=25 Score=34.79 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=19.2
Q ss_pred CcccccEEEeCcCcEEEEEEeC
Q 014036 390 EEAIRNSFTSKEAGKLVLSVDN 411 (432)
Q Consensus 390 ~~~~~g~~~~~~~G~y~l~fdN 411 (432)
-.+..|.|+|+.||+|.+.|.=
T Consensus 57 yn~~TG~Ftapv~GvY~Fsf~~ 78 (442)
T 4dou_A 57 YDGSTGKFHCNIPGLYYFAYHI 78 (442)
T ss_dssp EETTTTEEECCSCEEEEEEEEE
T ss_pred cCCCCCEEeCCCCEEEEEEEEE
Confidence 4477999999999999999963
No 47
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.73 E-value=51 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=20.8
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
+.....+=|+++++|+++|++.|..+
T Consensus 22 ~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 22 SKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 44567888999999999999877654
No 48
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.56 E-value=41 Score=22.05 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=21.7
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
++.....+=|+++++|+++|.+.|..
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35677888999999999999988754
No 49
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=33.31 E-value=82 Score=24.52 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWR 134 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~wR 134 (432)
-+||+.|++.|..|++........ + ......-+...+.+-+||-.+|...+.....-.
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~-----------~-----~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~ 73 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKR-----------P-----PLEERRAMHDIIASDTFDKAKAEAQIAKMEEQR 73 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCC-----------C-----CHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhccc-----------c-----cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 489999999999999987766431 0 111223466677788999888887776554443
No 50
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=32.76 E-value=59 Score=26.74 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=22.2
Q ss_pred EEEeCCCCCchhHHHHHHHHHHHHhhccccccceEEEEeC
Q 014036 223 QVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINV 262 (432)
Q Consensus 223 ~IiDl~g~s~~~~~~~~k~~~~~lq~~YPe~l~~i~iINa 262 (432)
+|+|.+|-.+..+.+.+-..+. .=..|+||||
T Consensus 2 ~viDA~g~~LGRLAs~vAk~L~--------~Gd~VVViNa 33 (142)
T 1j3a_A 2 RIINADGLILGRLASRVAKMLL--------EGEEVVIVNA 33 (142)
T ss_dssp EEEECTTBBHHHHHHHHHHHHH--------TTCCEEEECG
T ss_pred EEEeCCCCchHHHHHHHHHHHh--------cCCEEEEEeC
Confidence 5899999998766543333222 4567999998
No 51
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=32.57 E-value=24 Score=35.01 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=19.4
Q ss_pred cccccEEEeCcCcEEEEEEeCC
Q 014036 391 EAIRNSFTSKEAGKLVLSVDNS 412 (432)
Q Consensus 391 ~~~~g~~~~~~~G~y~l~fdNs 412 (432)
.+..|.|+|+.||+|.+.|.=+
T Consensus 199 n~~TG~Ftcpv~GvY~Fs~~~~ 220 (442)
T 4dou_A 199 DGSTGKFHCNIPGLYYFAYHIT 220 (442)
T ss_dssp ETTTTEEECCSCEEEEEEEEEE
T ss_pred cCCCCeEeCccceEEEEEEEEE
Confidence 3779999999999999999843
No 52
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=32.31 E-value=80 Score=26.80 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 60 l~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
...+|++++++|+.|.. . -++....++-|.+|++|.+.|...|-
T Consensus 123 ~i~~tpee~eaI~rL~~----m---------------------GF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 123 QVDYTPEDDQAISRLCE----L---------------------GFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCCHHHHHHHHHHHT----T---------------------TCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHH----c---------------------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45889999999876653 1 24556778889999999999998774
No 53
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=31.93 E-value=32 Score=22.30 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCHHHHHHH
Q 014036 107 VILLKFLRARDFRVLDSFNM 126 (432)
Q Consensus 107 ~~LlRfLra~~~dv~~A~~~ 126 (432)
.....||.+++||++.|+..
T Consensus 22 ~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 22 DEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHcCCcHHHHHHH
Confidence 67888999999999999754
No 54
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=31.55 E-value=63 Score=26.64 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=22.8
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHhhccccccceEEEEeC
Q 014036 222 IQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINV 262 (432)
Q Consensus 222 v~IiDl~g~s~~~~~~~~k~~~~~lq~~YPe~l~~i~iINa 262 (432)
-+|+|.+|..+..+.+.+-..+. .=..|+||||
T Consensus 9 w~viDA~g~~LGRLAs~vAk~L~--------~Gd~VVViNa 41 (145)
T 1vq8_J 9 DVIVDARDCIMGRVASQVAEQAL--------DGETVAVVNA 41 (145)
T ss_dssp SEEEECTTBBHHHHHHHHHHHHH--------TTCCEEEECG
T ss_pred EEEEeCCCCchHHHHHHHHHHHh--------cCCEEEEEeC
Confidence 35999999998766543333222 4568999998
No 55
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=31.04 E-value=43 Score=22.25 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=20.6
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLE 128 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~ 128 (432)
+....++-|++.++|+++|++.|.
T Consensus 26 ~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 26 NREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 566778999999999999998874
No 56
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.80 E-value=45 Score=23.48 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.2
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNML 127 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l 127 (432)
++.....||.+.+||++.|+..+
T Consensus 31 ~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 31 AADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55678999999999999998876
No 57
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.63 E-value=52 Score=20.65 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=20.1
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
+.....+=|+++++|++.|.+.|..
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 17 TEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 4466788899999999999987743
No 58
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=27.31 E-value=2.3e+02 Score=22.33 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=25.7
Q ss_pred ccccEEEeCcCcEEEEEEeCCCcccccceEEEEEEec
Q 014036 392 AIRNSFTSKEAGKLVLSVDNSSSRRRKVAAYRYIVRK 428 (432)
Q Consensus 392 ~~~g~~~~~~~G~y~l~fdNs~S~~kk~~~Y~~~v~~ 428 (432)
.+.|++.+.+||+|-|..-+ || ..+. .|.+.|+.
T Consensus 84 ~~~~~~~~~~pGkYYl~Vy~-y~-~~~g-~Y~l~i~g 117 (121)
T 3jqw_A 84 NLSGKFKADKPGRYYIHLYM-FN-GSYM-PYRINIEG 117 (121)
T ss_dssp EEEEEEEECSCEEEEEEEEE-EE-CSCE-EEEEEEEE
T ss_pred EEEEEEEeCCCeeEEEEEEE-ec-CCCc-cEEEEEEe
Confidence 56899999899999998875 32 2244 88888864
No 59
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.19 E-value=1e+02 Score=22.04 Aligned_cols=39 Identities=10% Similarity=0.303 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 68 KKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 68 ~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
-+.+.+||+++.+. -|..+-.+++..+.|.+.+.++|.+
T Consensus 11 ~qvfheLkQrFPEv-----------------------Pd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 11 FQVLHDLRQKFPEV-----------------------PEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp HHHHHHHHHHSSSS-----------------------CHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhcccC-----------------------cHHHHHHHHHHhccCHHHHHHHHHH
Confidence 36788888877544 4678999999999999999999865
No 60
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.19 E-value=72 Score=23.59 Aligned_cols=27 Identities=19% Similarity=-0.033 Sum_probs=22.7
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~~~ 130 (432)
++.....+-|++.++|+++|++.|..+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 356778889999999999999988765
No 61
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=26.88 E-value=56 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
.++...++-|++.++|+++|++.|.+
T Consensus 79 ~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 79 QDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35568899999999999999998864
No 62
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=26.34 E-value=93 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=23.0
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHhhccccccceEEEEeC
Q 014036 222 IQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINV 262 (432)
Q Consensus 222 v~IiDl~g~s~~~~~~~~k~~~~~lq~~YPe~l~~i~iINa 262 (432)
++|||.+|..+..+.+.+-..+ . .=..|+||||
T Consensus 6 ~vVIDA~g~vLGRLAS~VAk~L---~-----~Gd~VVVVNa 38 (199)
T 4b6a_O 6 VVVIDAKDHLLGRLASTIAKQL---L-----NGQKIVVVRA 38 (199)
T ss_dssp EEEEECTTBBHHHHHHHHHHHH---H-----TTCEEEEECG
T ss_pred EEEEECCCCchHHHHHHHHHHh---c-----CCCEEEEEEc
Confidence 6899999999877754432222 2 1467999998
No 63
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=25.48 E-value=42 Score=17.60 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=10.9
Q ss_pred CcHHHHHHHHHhcC
Q 014036 104 RADVILLKFLRARD 117 (432)
Q Consensus 104 ~~D~~LlRfLra~~ 117 (432)
..|..|||||-..+
T Consensus 3 ~kdhqllrylldkd 16 (21)
T 3dct_B 3 SKDHQLLRYLLDKD 16 (26)
T ss_pred hhHHHHHHHHHccc
Confidence 45889999998654
No 64
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.29 E-value=60 Score=23.38 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=21.6
Q ss_pred CcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 104 ~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
++.....+=|+++++|+++|++.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45677888999999999999988754
No 65
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=25.24 E-value=1.1e+02 Score=24.93 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCCCCCCcHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 014036 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLA 132 (432)
Q Consensus 61 ~~L~~~q~~~l~elr~~l~~~~~~~~~~~~~~~g~p~l~~~~~~~D~~LlRfLra~~~dv~~A~~~l~~~l~ 132 (432)
-+||++|++.|..|++........ + .......|...+.+-+||-.++...+.....
T Consensus 32 L~LT~eQ~~qir~i~~~~r~~~~~-----------~-----~~~~r~~l~~Li~a~~fDeaav~al~~~~~~ 87 (138)
T 3oeo_A 32 LNLTDAQKQQIREIMKGQRDQMKR-----------P-----PLEERRAMHDIITSDTFDKVKAEAQIAKMEE 87 (138)
T ss_dssp SCCCTTHHHHHHHHHHHHSSSSCC-----------C-----CTTHHHHHHHHHTCSSCCHHHHHHHHGGGSH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-----------H-----HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 479999999999999888766431 0 1223345666677788998887776655443
No 66
>3r9z_A WHY2 protein; stwhy2, single-stranded DNA binding protein, plant, potato, mitochondria, DNA binding protein; 1.75A {Solanum tuberosum} SCOP: d.18.1.0 PDB: 3r9y_A 3ra0_A* 3n1h_A 3n1i_A* 3n1j_A* 3n1k_A* 3n1l_A*
Probab=24.07 E-value=46 Score=28.37 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=26.4
Q ss_pred ccEEEeCcCcEEEEEEeCCCc-----ccccceEEEEEE
Q 014036 394 RNSFTSKEAGKLVLSVDNSSS-----RRRKVAAYRYIV 426 (432)
Q Consensus 394 ~g~~~~~~~G~y~l~fdNs~S-----~~kk~~~Y~~~v 426 (432)
.|.++..+.|...|+|-..-+ |.||. .|.+.+
T Consensus 38 sg~~~v~R~G~ilLefapa~g~rqYDW~kK~-~FsLS~ 74 (178)
T 3r9z_A 38 SGGVKLNRRGVIMLTFWPSVGERKYDWEKRQ-LFALSA 74 (178)
T ss_dssp TSSEEECSCCEEEEEEEEEEETTEECGGGCE-EEEECH
T ss_pred CCCEEEeeCCEEEEEEeecccccccccccCe-EEEeCH
Confidence 689999999999999987754 78888 776543
No 67
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=23.94 E-value=96 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=22.6
Q ss_pred EEEEeCCCCCchhHHHHHHHHHHHHhhccccccceEEEEeC
Q 014036 222 IQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINV 262 (432)
Q Consensus 222 v~IiDl~g~s~~~~~~~~k~~~~~lq~~YPe~l~~i~iINa 262 (432)
.+|+|.+|-.+..+.+.+-..+. .=..|+||||
T Consensus 5 w~VIDA~g~~LGRLAs~VAk~L~--------~GD~VVVINA 37 (198)
T 4a17_I 5 LVVIDAKGHLLGRLASYVAKELL--------SGQRIVVVRT 37 (198)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH--------TTCCEEEECG
T ss_pred EEEEeCCCCchHHHHHHHHHHHh--------CCCEEEEEcC
Confidence 36999999998766544333222 3457999998
No 68
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.10 E-value=95 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=21.4
Q ss_pred cHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 014036 105 ADVILLKFLRARDFRVLDSFNMLEKCL 131 (432)
Q Consensus 105 ~D~~LlRfLra~~~dv~~A~~~l~~~l 131 (432)
+.....+=|++.++|+++|++-|..+.
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 346677889999999999998887653
No 69
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=22.76 E-value=99 Score=25.82 Aligned_cols=30 Identities=13% Similarity=-0.052 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 014036 102 DERADVILLKFLRARDFRVLDSFNMLEKCL 131 (432)
Q Consensus 102 ~~~~D~~LlRfLra~~~dv~~A~~~l~~~l 131 (432)
...+..-+++-|+.+.+|++.|...|.+.+
T Consensus 113 G~~~~~~~~~aL~~~~Gdv~~Al~eLqr~l 142 (162)
T 4dbg_B 113 GFGPEEGSLQALFQHGGDVSRALTELQRQR 142 (162)
T ss_dssp TCCGGGTHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 356677789999999999999999987653
No 70
>1l3a_A PBF-2, P24: plant transcriptional regulator PBF-2; single strand DNA binding protein, whirly, transcriptionnal activator, cyclic C4 symmetry; 2.30A {Solanum tuberosum} SCOP: d.18.1.2
Probab=22.55 E-value=1.2e+02 Score=26.92 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=26.9
Q ss_pred ccEEEeCcCcEEEEEEeCCCc-----ccccceEEEEEE
Q 014036 394 RNSFTSKEAGKLVLSVDNSSS-----RRRKVAAYRYIV 426 (432)
Q Consensus 394 ~g~~~~~~~G~y~l~fdNs~S-----~~kk~~~Y~~~v 426 (432)
.|.++..+.|...|+|-..-. |.||+ .+.+.+
T Consensus 65 sG~~kv~R~G~ILLEFAPa~g~RqYDW~kKq-~FsLS~ 101 (227)
T 1l3a_A 65 SGAFKLSREGMVMLQFAPAAGVRQYDWSRKQ-VFSLSV 101 (227)
T ss_dssp TTEEEEEECCEEEEEEEEBCSTTCBCGGGCE-EEEECH
T ss_pred CCcEEEeeCCEEEEEEeeccCccccccccce-EEEeCH
Confidence 699999999999999998876 88998 666543
No 71
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.29 E-value=1.2e+02 Score=20.48 Aligned_cols=27 Identities=15% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCcHHHHHHHHHhcCCCHHHHHHHHHH
Q 014036 103 ERADVILLKFLRARDFRVLDSFNMLEK 129 (432)
Q Consensus 103 ~~~D~~LlRfLra~~~dv~~A~~~l~~ 129 (432)
..+...=.+-|+..++|+++|+..|.+
T Consensus 21 F~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 21 FCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456677789999999999999887754
Done!