Query 014037
Match_columns 432
No_of_seqs 262 out of 1993
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:21:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 3.2E-06 1.1E-10 68.6 10.8 71 193-263 34-105 (110)
2 2i68_A Protein EMRE; transmemb 98.3 2.1E-06 7.3E-11 72.3 7.9 70 193-262 34-104 (137)
3 2i68_A Protein EMRE; transmemb 98.2 2.2E-06 7.4E-11 72.2 7.3 56 361-416 49-105 (137)
4 3b5d_A Multidrug transporter E 97.9 0.00016 5.6E-09 58.4 12.8 55 361-415 49-104 (110)
5 3l1l_A Arginine/agmatine antip 40.5 82 0.0028 30.4 8.5 25 397-421 409-433 (445)
6 4dve_A Biotin transporter BIOY 16.5 4.3E+02 0.015 22.7 7.6 88 187-277 15-108 (198)
7 1pw4_A Glycerol-3-phosphate tr 7.6 1.2E+03 0.041 21.2 27.4 20 394-413 412-431 (451)
8 2h3o_A MERF; membrane protein, 6.7 1.5E+02 0.005 20.5 0.8 13 406-418 43-55 (61)
9 4dx5_A Acriflavine resistance 6.6 1.3E+03 0.046 24.9 9.0 85 344-428 873-963 (1057)
10 2knc_B Integrin beta-3; transm 6.5 7.5E+02 0.026 17.7 5.3 46 375-430 9-54 (79)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.36 E-value=3.2e-06 Score=68.56 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHH-hhhhHHHHHHHHHHHccCccChhhHHHHhHHhhhhhhhccCC
Q 014037 193 TPVAFCHALGHVMSNVSFATVAVSFTHTI-KALEPFFNAAASQFVLGHQIPLSLWLSLAPVVIGVSMASLTE 263 (432)
Q Consensus 193 l~~~~~~~~~~~l~~~al~~v~vs~~~ii-~s~~Pvft~ils~~~l~e~~~~~~~lsl~~~~~Gv~l~~~~~ 263 (432)
+...+++.+...+...+++++|++.+..+ ..+.|+++++++++++||++++.+++++.++++|+++....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44456678888899999999999999888 899999999999999999999999999999999999886644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.26 E-value=2.1e-06 Score=72.28 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHH-hhhhHHHHHHHHHHHccCccChhhHHHHhHHhhhhhhhccC
Q 014037 193 TPVAFCHALGHVMSNVSFATVAVSFTHTI-KALEPFFNAAASQFVLGHQIPLSLWLSLAPVVIGVSMASLT 262 (432)
Q Consensus 193 l~~~~~~~~~~~l~~~al~~v~vs~~~ii-~s~~Pvft~ils~~~l~e~~~~~~~lsl~~~~~Gv~l~~~~ 262 (432)
+...+++++...+.+.+++++|++.+..+ ..+.|+++++++++++||++++.+++|++++++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33456678888999999999999999888 89999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.23 E-value=2.2e-06 Score=72.22 Aligned_cols=56 Identities=23% Similarity=0.242 Sum_probs=40.4
Q ss_pred HHhhccChhHHHHH-HHHHHHHHHHHHHHhhCcccchhhhHHHHHHHHHHHHHHHhh
Q 014037 361 NTLERVAPLTHAVG-NVLKRVFVIGFSIVVFGNKISTQTGIGTAVAIAGVAIYSLIK 416 (432)
Q Consensus 361 ~~l~~~sa~t~sv~-~~lk~v~~ills~l~fge~~s~~~~iG~~lii~Gv~ly~~~k 416 (432)
..+++.++.....+ ..+.|++++++++++|||++++.+++|++++++|+++.+..+
T Consensus 49 ~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 78889999888676 899999999999999999999999999999999999988654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.94 E-value=0.00016 Score=58.38 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=48.9
Q ss_pred HHhhccChhHHHHH-HHHHHHHHHHHHHHhhCcccchhhhHHHHHHHHHHHHHHHh
Q 014037 361 NTLERVAPLTHAVG-NVLKRVFVIGFSIVVFGNKISTQTGIGTAVAIAGVAIYSLI 415 (432)
Q Consensus 361 ~~l~~~sa~t~sv~-~~lk~v~~ills~l~fge~~s~~~~iG~~lii~Gv~ly~~~ 415 (432)
..+++.+..+.... ..+.++.+.++++++|||++|+.+++|++++++|+.+.+..
T Consensus 49 ~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 57778888777555 88999999999999999999999999999999999998754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=40.54 E-value=82 Score=30.35 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhHH
Q 014037 397 QTGIGTAVAIAGVAIYSLIKANMEE 421 (432)
Q Consensus 397 ~~~iG~~lii~Gv~ly~~~k~~~~~ 421 (432)
..+.|.++++.|..+|...+++.++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3456888888999999877655443
No 6
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=16.46 E-value=4.3e+02 Score=22.71 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHhhhhHHHHHHHHHHHccCccC-hhhHHHHhHHhhhhhhhccCCcc
Q 014037 187 ELLVILTPVAFCHALGHVMSNVSFATVAVSFTHTIKALEPFFNAAASQFVLGHQIP-LSLWLSLAPVVIGVSMASLTELS 265 (432)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~l~~~al~~v~vs~~~ii~s~~Pvft~ils~~~l~e~~~-~~~~lsl~~~~~Gv~l~~~~~~~ 265 (432)
+..+.+...+++-++...+...+ .+|+++.-+=-.++.+++++.+ .++|.|.. ....+=++++.+|+=+.+.+..+
T Consensus 15 ~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG-~~LG~r~G~lsv~lYlllG~~GlPVFagg~gG 91 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAG-GLLGPKYGTISVGAFLALALIGLPVLTGGNGG 91 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCBTTTBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHH-HHHChhHHHHHHHHHHHHHHHcCccccCCCCc
Confidence 35566665555554433333221 2344433222346777776655 46665555 44555566677776555544322
Q ss_pred c-----cHHHHHHHHHH
Q 014037 266 F-----NWTGFISAMIS 277 (432)
Q Consensus 266 ~-----~~~G~l~~l~s 277 (432)
. ...|+++++.-
T Consensus 92 ~~~l~gPTgGYLiGF~~ 108 (198)
T 4dve_A 92 AASFLGPSGGYRIAWLF 108 (198)
T ss_dssp SGGGGSTTHHHHHHHHH
T ss_pred hhHHhcchhHHHHHHHH
Confidence 2 23577776554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.58 E-value=1.2e+03 Score=21.20 Aligned_cols=20 Identities=10% Similarity=-0.079 Sum_probs=8.6
Q ss_pred cchhhhHHHHHHHHHHHHHH
Q 014037 394 ISTQTGIGTAVAIAGVAIYS 413 (432)
Q Consensus 394 ~s~~~~iG~~lii~Gv~ly~ 413 (432)
.....++..++.+.+.++..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 8
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=6.71 E-value=1.5e+02 Score=20.54 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhh
Q 014037 406 IAGVAIYSLIKAN 418 (432)
Q Consensus 406 i~Gv~ly~~~k~~ 418 (432)
+.|..+|...|++
T Consensus 43 figl~~Y~~~r~~ 55 (61)
T 2h3o_A 43 FIGLTIYAIQRKR 55 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3488888876644
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=6.57 E-value=1.3e+03 Score=24.88 Aligned_cols=85 Identities=13% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhCcccchhhhHHHHHHHH-----HHHHHHHhhhh
Q 014037 344 DLFWIGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAVAIA-----GVAIYSLIKAN 418 (432)
Q Consensus 344 ~l~~~g~~~~~~~~~~~~~l~~~sa~t~sv~~~lk~v~~ills~l~fge~~s~~~~iG~~lii~-----Gv~ly~~~k~~ 418 (432)
......+...+.........+........+....--++..+.+..++|.+++...++|+++.+. ++++..+.++.
T Consensus 873 ~~~~~~~a~~~i~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~ 952 (1057)
T 4dx5_A 873 APSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDL 952 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHH
Q ss_pred -hHHhHHhhhh
Q 014037 419 -MEEGKRKAAL 428 (432)
Q Consensus 419 -~~~~~~~~~~ 428 (432)
.++....+.+
T Consensus 953 ~~~~g~~~~~A 963 (1057)
T 4dx5_A 953 MDKEGKGLIEA 963 (1057)
T ss_dssp HHSSCCCHHHH
T ss_pred HHHcCCCHHHH
No 10
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.48 E-value=7.5e+02 Score=17.72 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhCcccchhhhHHHHHHHHHHHHHHHhhhhhHHhHHhhhhhh
Q 014037 375 NVLKRVFVIGFSIVVFGNKISTQTGIGTAVAIAGVAIYSLIKANMEEGKRKAALAA 430 (432)
Q Consensus 375 ~~lk~v~~ills~l~fge~~s~~~~iG~~lii~Gv~ly~~~k~~~~~~~~~~~~~~ 430 (432)
+....+..++.+++ ++|.++.++=-++.....++..++-+++.+.+
T Consensus 9 n~~~Iv~gvi~gil----------liGllllliwk~~~~i~DrrE~~kFEkE~~~~ 54 (79)
T 2knc_B 9 DILVVLLSVMGAIL----------LIGLAALLIWKLLITIHDRKEFAKFEEERARA 54 (79)
T ss_dssp CSHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!