Query 014037
Match_columns 432
No_of_seqs 262 out of 1993
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 04:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014037.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014037hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 15.5 3.4E+02 0.025 23.6 22.1 70 231-302 244-314 (383)
2 d1pv7a_ f.38.1.2 (A:) Lactose 9.9 4.1E+02 0.03 21.3 10.7 16 138-153 24-39 (417)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 6.1 2E+02 0.015 14.5 2.6 19 269-287 3-21 (27)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 6.0 6.6E+02 0.048 20.5 23.6 7 231-237 198-204 (447)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 5.4 6E+02 0.044 19.2 9.2 48 366-413 63-110 (199)
6 d1iwga8 f.35.1.1 (A:513-566,A: 4.2 7.5E+02 0.055 19.0 9.8 28 381-408 96-123 (222)
7 d2apob1 g.41.16.1 (B:403-457) 3.4 2.5E+02 0.018 17.3 1.7 23 28-51 10-36 (55)
8 d1ppjd2 f.23.11.1 (D:196-241) 3.4 4.8E+02 0.035 15.2 3.0 21 397-417 11-31 (46)
9 d1q90a3 f.23.23.1 (A:248-292) 3.1 2.7E+02 0.02 16.2 1.6 26 269-294 6-31 (45)
10 d2ey4e1 g.41.16.1 (E:4-55) Rib 2.7 3E+02 0.022 16.7 1.5 23 28-51 8-34 (52)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=15.54 E-value=3.4e+02 Score=23.61 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHHccCccChhhHHHHhHHhhhhhhhccCCccccHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCchhHHH
Q 014037 231 AASQFVLGHQIPLSLWLSLAPVVIGVSMASLTELSFNWT-GFISAMISNIAFTYRSIYSKKAMTGMDSTNVYA 302 (432)
Q Consensus 231 ils~~~l~e~~~~~~~lsl~~~~~Gv~l~~~~~~~~~~~-G~l~~l~s~l~~Al~~vl~kk~~~~~~~~~~~~ 302 (432)
++...+.++|.+...... -+++|.+-++....-.+++ .++..+++.+..-+...+.|+..+-.|+.....
T Consensus 244 ~~~~~~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~ 314 (383)
T d1u7ga_ 244 IFGEWALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFG 314 (383)
T ss_dssp HHHHHHHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHH
T ss_pred HHHHHHhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEe
Confidence 333335566676544332 2234444333332233433 466665555443333333333334345555444
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=9.93 E-value=4.1e+02 Score=21.33 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhCC
Q 014037 138 NVIFNILNKKVYNYFP 153 (432)
Q Consensus 138 s~~~~~~nK~~l~~f~ 153 (432)
+....++..++.++++
T Consensus 24 ~~~~~~l~~~l~~~~g 39 (417)
T d1pv7a_ 24 GAYFPFFPIWLHDINH 39 (417)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccC
Confidence 3334455555544433
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.07 E-value=2e+02 Score=14.54 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014037 269 TGFISAMISNIAFTYRSIY 287 (432)
Q Consensus 269 ~G~l~~l~s~l~~Al~~vl 287 (432)
.|.+..-++.++||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 4677777777888776543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.01 E-value=6.6e+02 Score=20.49 Aligned_cols=7 Identities=0% Similarity=-0.135 Sum_probs=2.7
Q ss_pred HHHHHHc
Q 014037 231 AASQFVL 237 (432)
Q Consensus 231 ils~~~l 237 (432)
++.+++.
T Consensus 198 ~~~~~~~ 204 (447)
T d1pw4a_ 198 LFAFAMM 204 (447)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 3333443
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.36 E-value=6e+02 Score=19.24 Aligned_cols=48 Identities=19% Similarity=0.041 Sum_probs=30.9
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHhhCcccchhhhHHHHHHHHHHHHHH
Q 014037 366 VAPLTHAVGNVLKRVFVIGFSIVVFGNKISTQTGIGTAVAIAGVAIYS 413 (432)
Q Consensus 366 ~sa~t~sv~~~lk~v~~ills~l~fge~~s~~~~iG~~lii~Gv~ly~ 413 (432)
.-+.........-.+........++|.+++.....+..+.+....-|+
T Consensus 63 ~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 63 FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 333334444444455555666778889999998888888766555443
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.25 E-value=7.5e+02 Score=18.96 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCcccchhhhHHHHHHHHH
Q 014037 381 FVIGFSIVVFGNKISTQTGIGTAVAIAG 408 (432)
Q Consensus 381 ~~ills~l~fge~~s~~~~iG~~lii~G 408 (432)
...+.+..++|.+++....+|.++.+..
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 3445667778889999998888886443
No 7
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.38 E-value=2.5e+02 Score=17.34 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=11.6
Q ss_pred ccccccccccccc----ccccccCCCCC
Q 014037 28 CCAKVLNSTRSLT----SNARRLLDFSP 51 (432)
Q Consensus 28 ~~~~~~~~~~~~~----~~~~~~~~~~~ 51 (432)
++.|+|. ...+. ..+..|..|||
T Consensus 10 C~~YTL~-~~CP~CG~~t~~a~P~rfSP 36 (55)
T d2apob1 10 CGLYTLK-EICPKCGEKTVIPKPPKFSL 36 (55)
T ss_dssp TCCEESS-SBCSSSCSBCBCCCCCCCCT
T ss_pred ccceecc-ccCcCCCCccCccCCCCCCC
Confidence 5567774 44422 23355555555
No 8
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.35 E-value=4.8e+02 Score=15.20 Aligned_cols=21 Identities=0% Similarity=-0.300 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhh
Q 014037 397 QTGIGTAVAIAGVAIYSLIKA 417 (432)
Q Consensus 397 ~~~iG~~lii~Gv~ly~~~k~ 417 (432)
..++.+..++.+...|.....
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666654433
No 9
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.12 E-value=2.7e+02 Score=16.24 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Q 014037 269 TGFISAMISNIAFTYRSIYSKKAMTG 294 (432)
Q Consensus 269 ~G~l~~l~s~l~~Al~~vl~kk~~~~ 294 (432)
.|++.-+++.+..-+..|+-||-.++
T Consensus 6 ~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 6 QGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555666666665544
No 10
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.70 E-value=3e+02 Score=16.69 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=11.6
Q ss_pred ccccccccccccc----ccccccCCCCC
Q 014037 28 CCAKVLNSTRSLT----SNARRLLDFSP 51 (432)
Q Consensus 28 ~~~~~~~~~~~~~----~~~~~~~~~~~ 51 (432)
++.|+|. ...+. ..+..|..|||
T Consensus 8 C~~YTL~-~~CP~CG~~t~~a~ParfSP 34 (52)
T d2ey4e1 8 CGRYTLK-EVCPVCGEKTKVAHPPRFSP 34 (52)
T ss_dssp TCCEESS-SBCTTTCCBCEESSCCCCCT
T ss_pred ccceecc-ccCcCCCCcccccCCCCCCC
Confidence 4567774 44422 23355555555
Done!