Query 014040
Match_columns 432
No_of_seqs 216 out of 2186
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 04:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 1.9E-74 6.4E-79 568.7 41.0 362 41-428 14-376 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 1.2E-70 4E-75 538.9 30.6 356 47-428 5-364 (389)
3 1a12_A RCC1, regulator of chro 100.0 3.5E-68 1.2E-72 525.8 34.5 354 47-429 12-385 (413)
4 3mvd_K Regulator of chromosome 100.0 8.2E-68 2.8E-72 525.0 36.1 357 40-429 21-394 (423)
5 3of7_A Regulator of chromosome 100.0 8.9E-67 3.1E-71 523.7 33.1 368 41-428 8-425 (473)
6 3kci_A Probable E3 ubiquitin-p 100.0 6.6E-66 2.2E-70 505.2 33.5 332 43-397 53-388 (389)
7 4d9s_A UVB-resistance protein 100.0 4.2E-64 1.4E-68 494.9 30.9 342 13-370 13-380 (406)
8 1a12_A RCC1, regulator of chro 100.0 3.4E-63 1.2E-67 490.0 35.7 334 43-399 59-412 (413)
9 3mvd_K Regulator of chromosome 100.0 1.8E-61 6.2E-66 479.4 37.7 356 14-398 22-420 (423)
10 3of7_A Regulator of chromosome 100.0 2.6E-61 8.7E-66 484.1 34.6 330 43-395 67-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 1.7E-51 5.8E-56 384.2 28.8 253 43-400 24-276 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 2.3E-50 7.8E-55 376.5 28.8 251 63-413 3-253 (282)
13 1p22_A F-BOX/WD-repeat protein 97.7 0.04 1.4E-06 53.3 30.2 284 43-409 134-417 (435)
14 2ovr_B FBW7, F-BOX/WD repeat p 97.4 0.11 3.7E-06 50.2 31.1 269 46-406 123-391 (445)
15 1p22_A F-BOX/WD-repeat protein 97.1 0.24 8.1E-06 47.7 28.6 229 96-404 135-363 (435)
16 4aez_A CDC20, WD repeat-contai 96.7 0.42 1.4E-05 45.3 28.9 276 45-408 96-382 (401)
17 4gbf_A Phikz131; 7-bladed beta 96.7 0.0045 1.5E-07 54.1 7.7 87 312-426 310-396 (400)
18 4gbf_A Phikz131; 7-bladed beta 96.6 0.0049 1.7E-07 53.8 7.5 72 259-343 309-380 (400)
19 1k3i_A Galactose oxidase precu 96.4 0.23 7.7E-06 51.1 20.2 56 105-175 245-305 (656)
20 1gxr_A ESG1, transducin-like e 96.3 0.58 2E-05 42.4 30.7 282 51-409 10-299 (337)
21 2ovr_B FBW7, F-BOX/WD repeat p 96.3 0.82 2.8E-05 43.9 32.4 227 44-337 161-389 (445)
22 3k26_A Polycomb protein EED; W 96.2 0.7 2.4E-05 42.4 25.2 211 42-287 18-260 (366)
23 3odt_A Protein DOA1; ubiquitin 95.0 1.8 6.3E-05 38.5 27.7 186 95-338 105-295 (313)
24 1r5m_A SIR4-interacting protei 94.7 2.7 9.4E-05 39.2 26.0 200 159-403 218-422 (425)
25 1sq9_A Antiviral protein SKI8; 94.4 3.1 0.00011 38.6 29.5 209 41-286 15-266 (397)
26 3vl1_A 26S proteasome regulato 93.8 4.4 0.00015 38.0 28.3 143 47-231 63-210 (420)
27 3sfz_A APAF-1, apoptotic pepti 93.5 8.3 0.00029 42.3 22.6 185 104-337 1015-1205(1249)
28 2zwa_A Leucine carboxyl methyl 93.3 6.5 0.00022 40.5 19.9 20 319-338 597-616 (695)
29 3k26_A Polycomb protein EED; W 93.0 5.1 0.00018 36.4 24.5 158 95-286 19-191 (366)
30 3mmy_A MRNA export factor; mRN 93.0 5.1 0.00018 36.4 23.4 193 94-338 39-246 (368)
31 4g56_B MGC81050 protein; prote 92.8 6 0.00021 36.6 26.3 111 150-284 96-210 (357)
32 1k3i_A Galactose oxidase precu 92.7 9.8 0.00033 38.7 21.3 73 268-342 457-534 (656)
33 1gxr_A ESG1, transducin-like e 92.5 5.6 0.00019 35.6 26.3 183 96-335 143-333 (337)
34 1sq9_A Antiviral protein SKI8; 92.2 7.1 0.00024 36.1 21.3 161 95-286 122-321 (397)
35 3odt_A Protein DOA1; ubiquitin 92.1 6 0.0002 35.0 30.7 271 43-406 19-296 (313)
36 3v7d_B Cell division control p 92.0 8.6 0.00029 36.6 32.7 202 96-337 205-419 (464)
37 3zwl_B Eukaryotic translation 91.2 8.3 0.00029 34.9 29.0 202 43-285 33-247 (369)
38 4aez_A CDC20, WD repeat-contai 91.0 10 0.00035 35.4 23.4 148 97-286 96-247 (401)
39 2zwa_A Leucine carboxyl methyl 89.9 11 0.00039 38.6 17.3 17 269-285 657-673 (695)
40 4a11_B DNA excision repair pro 89.3 13 0.00045 34.2 31.0 311 41-410 42-369 (408)
41 2xyi_A Probable histone-bindin 89.0 16 0.00053 34.6 24.3 268 96-406 130-410 (430)
42 1pgu_A Actin interacting prote 88.9 19 0.00064 35.5 27.3 187 96-338 162-365 (615)
43 3no0_A DNA gyrase subunit A; D 88.5 13 0.00045 33.2 21.2 207 52-294 35-253 (276)
44 3mmy_A MRNA export factor; mRN 88.5 14 0.00047 33.4 21.2 152 147-338 38-198 (368)
45 3v7d_B Cell division control p 87.8 19 0.00065 34.1 31.4 238 46-338 126-380 (464)
46 3jrp_A Fusion protein of prote 87.6 16 0.00055 33.1 26.7 199 96-338 13-239 (379)
47 2aq5_A Coronin-1A; WD40 repeat 87.5 18 0.00062 33.6 28.1 154 48-230 40-204 (402)
48 4ery_A WD repeat-containing pr 87.3 15 0.00053 32.6 28.3 191 43-286 24-222 (312)
49 3i2n_A WD repeat-containing pr 83.8 24 0.00082 31.6 24.4 198 43-287 66-291 (357)
50 1k8k_C P40, ARP2/3 complex 41 82.9 27 0.00092 31.6 27.6 208 96-338 54-273 (372)
51 3no0_A DNA gyrase subunit A; D 82.5 26 0.00091 31.2 23.4 220 148-413 23-253 (276)
52 2xyi_A Probable histone-bindin 82.0 34 0.0012 32.2 25.5 262 43-337 129-408 (430)
53 2aq5_A Coronin-1A; WD40 repeat 81.9 32 0.0011 31.8 27.5 155 100-285 40-205 (402)
54 4a11_B DNA excision repair pro 81.7 31 0.0011 31.5 26.3 216 94-339 43-276 (408)
55 1q7f_A NHL, brain tumor CG1071 79.6 31 0.001 30.1 22.2 17 270-286 210-226 (286)
56 3uc1_A DNA gyrase subunit A; D 79.2 38 0.0013 31.0 22.5 222 48-294 49-286 (327)
57 3uc1_A DNA gyrase subunit A; D 78.3 41 0.0014 30.8 23.5 223 154-411 49-284 (327)
58 3mkq_A Coatomer beta'-subunit; 78.0 65 0.0022 32.9 30.5 232 43-338 14-258 (814)
59 3i2n_A WD repeat-containing pr 77.7 39 0.0013 30.2 30.5 301 41-405 17-352 (357)
60 4g56_B MGC81050 protein; prote 77.1 44 0.0015 30.5 31.0 240 96-408 96-345 (357)
61 4asc_A Kelch repeat and BTB do 76.9 16 0.00054 32.9 10.4 17 268-285 140-156 (315)
62 4aow_A Guanine nucleotide-bind 76.8 40 0.0014 29.9 23.1 68 202-285 216-284 (340)
63 1r5m_A SIR4-interacting protei 76.3 47 0.0016 30.4 27.8 65 96-175 110-178 (425)
64 3jro_A Fusion protein of prote 75.8 75 0.0026 32.6 23.7 201 43-287 10-238 (753)
65 4gga_A P55CDC, cell division c 75.4 53 0.0018 30.6 28.3 99 52-174 115-215 (420)
66 3jrp_A Fusion protein of prote 74.8 48 0.0016 29.8 27.6 243 42-338 11-286 (379)
67 1pgu_A Actin interacting prote 73.1 72 0.0025 31.1 27.5 111 258-404 488-612 (615)
68 3gre_A Serine/threonine-protei 72.9 61 0.0021 30.1 21.5 117 95-230 112-242 (437)
69 2vpj_A Kelch-like protein 12; 72.3 28 0.00096 30.8 10.8 17 321-338 246-262 (301)
70 3mkq_A Coatomer beta'-subunit; 72.2 90 0.0031 31.8 25.7 190 96-337 15-215 (814)
71 2pm9_A Protein WEB1, protein t 72.0 60 0.0021 29.7 25.7 249 95-408 68-339 (416)
72 3ii7_A Kelch-like protein 7; p 71.3 25 0.00087 31.2 10.2 17 320-337 192-208 (306)
73 3zwl_B Eukaryotic translation 70.0 60 0.002 28.9 24.5 68 150-230 177-246 (369)
74 4gqb_B Methylosome protein 50; 70.0 65 0.0022 29.3 32.0 234 55-336 35-286 (344)
75 2ymu_A WD-40 repeat protein; u 66.9 95 0.0033 30.0 28.6 224 96-403 305-536 (577)
76 3gre_A Serine/threonine-protei 66.9 81 0.0028 29.2 18.2 58 104-174 182-242 (437)
77 1erj_A Transcriptional repress 66.6 80 0.0027 29.1 28.6 25 150-174 167-193 (393)
78 1wp5_A Topoisomerase IV; broke 66.0 79 0.0027 28.8 22.0 226 99-344 45-282 (323)
79 3vl1_A 26S proteasome regulato 65.3 84 0.0029 28.8 28.6 67 95-175 140-210 (420)
80 3ei3_B DNA damage-binding prot 65.2 81 0.0028 28.6 25.0 194 43-287 74-282 (383)
81 1yfq_A Cell cycle arrest prote 65.1 73 0.0025 28.1 28.1 205 96-339 13-225 (342)
82 3l6v_A GYRA, DNA gyrase subuni 64.7 91 0.0031 29.0 26.3 125 47-183 52-186 (370)
83 2pm9_A Protein WEB1, protein t 62.5 93 0.0032 28.4 18.8 153 96-287 167-337 (416)
84 3no2_A Uncharacterized protein 62.2 81 0.0028 27.6 18.9 23 270-293 245-267 (276)
85 3f3f_A Nucleoporin SEH1; struc 60.0 88 0.003 27.3 29.9 122 43-177 12-143 (351)
86 1erj_A Transcriptional repress 59.9 1.1E+02 0.0036 28.2 21.8 121 149-285 257-387 (393)
87 2woz_A Kelch repeat and BTB do 58.8 93 0.0032 27.6 11.5 17 268-285 150-166 (318)
88 1yfq_A Cell cycle arrest prote 58.5 97 0.0033 27.3 28.4 204 43-287 12-225 (342)
89 4gqb_B Methylosome protein 50; 57.7 1.1E+02 0.0038 27.7 26.8 187 96-337 129-329 (344)
90 2vpj_A Kelch-like protein 12; 56.8 47 0.0016 29.3 9.0 17 268-285 104-120 (301)
91 3jro_A Fusion protein of prote 56.4 1.8E+02 0.0061 29.7 26.1 199 96-338 11-237 (753)
92 1xip_A Nucleoporin NUP159; bet 56.4 23 0.00078 33.4 6.9 106 52-174 39-152 (388)
93 3l6v_A GYRA, DNA gyrase subuni 55.7 1.3E+02 0.0045 27.9 21.8 228 96-345 47-322 (370)
94 1q7f_A NHL, brain tumor CG1071 53.7 1.1E+02 0.0037 26.4 24.5 17 322-338 210-226 (286)
95 3vgz_A Uncharacterized protein 53.6 1.2E+02 0.004 26.8 21.6 229 54-342 92-338 (353)
96 1xip_A Nucleoporin NUP159; bet 53.5 1.5E+02 0.005 27.8 13.1 63 151-230 90-152 (388)
97 1k8k_C P40, ARP2/3 complex 41 53.1 1.2E+02 0.0042 26.9 28.3 209 149-406 53-274 (372)
98 1suu_A DNA gyrase subunit A; t 53.1 1.3E+02 0.0044 27.1 27.0 262 53-339 9-283 (312)
99 1zi0_A DNA gyrase subunit A; b 51.7 1.3E+02 0.0046 26.9 27.9 220 48-292 49-282 (307)
100 3ow8_A WD repeat-containing pr 50.4 1.4E+02 0.0046 26.6 28.5 150 202-403 165-318 (321)
101 3e5z_A Putative gluconolactona 49.8 1.3E+02 0.0044 26.1 14.4 15 270-284 221-235 (296)
102 2ymu_A WD-40 repeat protein; u 49.7 1.8E+02 0.0063 27.9 31.0 144 150-336 387-536 (577)
103 3q7x_A De novo designed beta-t 49.5 90 0.0031 24.2 9.6 102 47-171 10-112 (132)
104 1zgk_A Kelch-like ECH-associat 48.2 59 0.002 28.8 8.2 18 320-338 207-224 (308)
105 4gga_A P55CDC, cell division c 47.0 1.8E+02 0.006 26.9 21.2 102 158-285 115-216 (420)
106 1zvt_A Topoisomerase IV subuni 44.9 1.6E+02 0.0054 25.7 12.8 122 48-183 40-169 (256)
107 2qc5_A Streptogramin B lactona 44.6 1.5E+02 0.0051 25.3 20.6 18 320-337 273-290 (300)
108 3no2_A Uncharacterized protein 42.5 1.7E+02 0.0058 25.4 24.5 169 146-347 85-269 (276)
109 3ii7_A Kelch-like protein 7; p 42.5 1.7E+02 0.0059 25.5 13.1 17 268-285 93-109 (306)
110 3p6j_A De novo designed beta-t 41.7 1.3E+02 0.0043 23.7 11.3 107 200-334 28-138 (142)
111 3p6j_A De novo designed beta-t 41.4 1.3E+02 0.0044 23.7 12.3 68 257-335 28-97 (142)
112 3sfz_A APAF-1, apoptotic pepti 41.1 3.7E+02 0.013 29.0 29.5 107 96-230 659-771 (1249)
113 3bws_A Protein LP49; two-domai 40.2 2.2E+02 0.0075 26.0 18.2 26 204-230 305-331 (433)
114 1wp5_A Topoisomerase IV; broke 39.5 2.2E+02 0.0074 25.8 25.0 224 48-294 46-284 (323)
115 1suu_A DNA gyrase subunit A; t 38.5 2.2E+02 0.0075 25.5 27.3 215 105-342 9-234 (312)
116 1nir_A Nitrite reductase; hemo 38.4 2.9E+02 0.0098 26.9 16.7 28 203-231 281-309 (543)
117 2xn4_A Kelch-like protein 2; s 37.4 47 0.0016 29.3 5.7 17 268-285 100-116 (302)
118 4ggc_A P55CDC, cell division c 35.7 2.1E+02 0.0072 24.5 27.0 140 54-230 37-178 (318)
119 3vu4_A KMHSV2; beta-propeller 35.1 2.5E+02 0.0085 25.2 21.6 157 203-406 102-271 (355)
120 1zvu_A Topoisomerase IV subuni 34.1 3.9E+02 0.013 27.2 13.8 120 51-182 513-638 (716)
121 1l0q_A Surface layer protein; 33.7 2.6E+02 0.0089 25.0 21.5 27 203-230 117-144 (391)
122 2uvk_A YJHT; unknown function, 32.8 1.7E+02 0.0056 26.4 8.8 19 319-338 109-127 (357)
123 1vyh_C Platelet-activating fac 32.8 2.9E+02 0.01 25.3 30.0 105 96-230 152-262 (410)
124 4e54_B DNA damage-binding prot 32.5 3E+02 0.01 25.4 19.6 70 41-121 118-194 (435)
125 1l0q_A Surface layer protein; 32.3 2.7E+02 0.0094 24.8 18.3 12 327-338 263-274 (391)
126 3ei3_B DNA damage-binding prot 32.1 2.8E+02 0.0094 24.8 23.0 194 96-339 75-282 (383)
127 3dwl_C Actin-related protein 2 31.5 2.8E+02 0.0095 24.6 22.9 258 96-402 5-277 (377)
128 4aow_A Guanine nucleotide-bind 31.1 2.6E+02 0.0089 24.2 30.3 75 41-122 37-116 (340)
129 3v9f_A Two-component system se 28.0 4.9E+02 0.017 26.4 22.3 17 322-338 631-647 (781)
130 2qc5_A Streptogramin B lactona 26.8 2.9E+02 0.0099 23.3 22.8 18 52-69 21-38 (300)
131 3vu4_A KMHSV2; beta-propeller 25.6 3.6E+02 0.012 24.0 20.4 72 148-231 195-269 (355)
132 1vyh_C Platelet-activating fac 25.4 3.9E+02 0.013 24.4 22.1 57 160-230 310-366 (410)
133 1rwi_B Serine/threonine-protei 25.3 3E+02 0.01 23.0 16.1 189 106-335 27-218 (270)
134 3f3f_A Nucleoporin SEH1; struc 25.3 3.2E+02 0.011 23.4 23.0 79 42-123 57-143 (351)
135 1zi0_A DNA gyrase subunit A; b 23.1 4E+02 0.014 23.7 24.9 219 154-407 49-278 (307)
136 2ynn_A Coatomer subunit beta'; 23.0 3.6E+02 0.012 23.2 26.7 149 96-285 15-170 (304)
137 3dw8_B Serine/threonine-protei 22.9 4.3E+02 0.015 24.0 15.3 226 54-283 181-442 (447)
138 3fvz_A Peptidyl-glycine alpha- 21.6 4.1E+02 0.014 23.3 24.0 21 103-123 24-44 (329)
139 4a2l_A BT_4663, two-component 21.6 6.5E+02 0.022 25.5 23.2 18 389-406 634-651 (795)
140 3fvz_A Peptidyl-glycine alpha- 21.1 4.2E+02 0.014 23.2 22.7 27 45-71 18-44 (329)
141 4e54_B DNA damage-binding prot 20.9 4.9E+02 0.017 23.9 19.3 26 148-173 119-147 (435)
142 1zvt_A Topoisomerase IV subuni 20.9 4.1E+02 0.014 22.9 16.0 158 55-239 5-169 (256)
143 1got_B GT-beta; complex (GTP-b 20.5 4.4E+02 0.015 23.1 22.7 182 52-283 154-339 (340)
144 3nvq_A Semaphorin-7A; beta-pro 20.4 5E+02 0.017 25.8 9.9 86 201-288 19-104 (590)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=1.9e-74 Score=568.71 Aligned_cols=362 Identities=30% Similarity=0.497 Sum_probs=334.1
Q ss_pred eecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCC-CEEEE
Q 014040 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAG-QVYAF 119 (432)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g-~vy~~ 119 (432)
..++|++|+||..|+++|+++|+||+||+|.+||||.++......|+++..+.+.+|++|+||..|+++|+++| +||+|
T Consensus 14 ~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 14 PPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp -CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred CccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 34689999999999999999999999999999999999998889999999888889999999999999999986 99999
Q ss_pred eCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014040 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (432)
Q Consensus 120 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 199 (432)
|.|.+||||.+. ......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++.. +
T Consensus 94 G~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-~ 170 (406)
T 4d9s_A 94 GWGDFGRLGHGN--SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQA-F 170 (406)
T ss_dssp ECCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGG-G
T ss_pred cCCCCcCCCCCC--CCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecc-c
Confidence 999999999987 4566788888888888999999999999999999999999999999999999888888888876 7
Q ss_pred CCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCC
Q 014040 200 ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGR 279 (432)
Q Consensus 200 ~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~ 279 (432)
.+.+|++|+||..|+++|++ +| +||+||.|.++|||.+.......|..+..+ ...+|++|+||.+|+++|+++|+
T Consensus 171 ~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 171 EGIRIKMVAAGAEHTAAVTE--DG-DLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp TTCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCC
T ss_pred CCCcEEEEecCCCeEEEEeC--CC-CEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCC
Confidence 77889999999999999998 99 999999999999999998888888888654 34689999999999999999999
Q ss_pred EEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCccccc
Q 014040 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANV 359 (432)
Q Consensus 280 vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~ 359 (432)
||+||.|.+||||.++......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ....
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~ 317 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--------NLDQ 317 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------SSCE
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC--------CCCC
Confidence 99999999999999998888999999999998999999999999999999999999999999999988 5667
Q ss_pred ccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCCCceEee
Q 014040 360 LTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 428 (432)
Q Consensus 360 ~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~ 428 (432)
..|.++..+ ...+|++|+| |.+|++||+++|+||+||.|++||||+|.. .+...|+.|+
T Consensus 318 ~~p~~v~~~--~~~~v~~va~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~ 376 (406)
T 4d9s_A 318 CSPVQVRFP--DDQKVVQVSC-----GWRHTLAVTERNNVFAWGRGTNGQLGIGES---VDRNFPKIIE 376 (406)
T ss_dssp EEEEEECCG--GGCCEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---CCEEEEEECG
T ss_pred ccCEEEecc--CCCcEEEEEe-----CCCeEEEEeCCCCEEEecCCCCCccCCCCC---CCCcCCEEee
Confidence 788888766 4578999999 999999999999999999999999999965 3456787775
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.2e-70 Score=538.86 Aligned_cols=356 Identities=29% Similarity=0.500 Sum_probs=311.6
Q ss_pred eEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCC
Q 014040 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGE 126 (432)
Q Consensus 47 ~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gq 126 (432)
++..-..++++++++|+||+||+|.+||||.++......|+++..+.+.+|++|+||..|+++|+++|+||+||.|.+||
T Consensus 5 ~~~~~~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~Gq 84 (389)
T 3kci_A 5 HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGR 84 (389)
T ss_dssp ----------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGT
T ss_pred ccccCcccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCC
Confidence 34455678899999999999999999999998888888899998888889999999999999999999999999999999
Q ss_pred ccCCCCCcccccCCeeecccCCc--cEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCE
Q 014040 127 AEYGVQGTKLVTSPQLVESLKNI--FVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPV 204 (432)
Q Consensus 127 lg~~~~~~~~~~~p~~v~~~~~~--~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i 204 (432)
||.+. ......|.+++.+.+. ++++|+||.+|+++|+++|+||+||.|.+||||.+.......|..+.. +.+.+|
T Consensus 85 LG~g~--~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~-l~~~~i 161 (389)
T 3kci_A 85 LGIGG--TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIES-LRGIEV 161 (389)
T ss_dssp TSSSS--SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTSCE
T ss_pred CCCCC--cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecc-cCCCeE
Confidence 99986 4566788888877765 457899999999999999999999999999999999888888888876 777889
Q ss_pred EEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC--ceEEEEeCCCCEEE
Q 014040 205 VQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCT 282 (432)
Q Consensus 205 ~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~--~h~~~lt~~g~vy~ 282 (432)
++|+||..|+++|++ +| +||+||.|.+||||.+.......|..+..+ ...+|++|+||. .|+++|+++|+||+
T Consensus 162 ~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~ 236 (389)
T 3kci_A 162 VDVAAGGAHSACVTA--AG-DLYTWGKGRYGRLGHSDSEDQLKPKLVEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWS 236 (389)
T ss_dssp EEEEECSSEEEEEET--TS-CEEEEECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEECCSSCEEEEEETTTEEEE
T ss_pred EEEEeCcCeEEEEeC--CC-eEEEeCCCCCCCcCCCCCcccccceEeccc--CCCeEEEEEEcCCCcEEEEEccCCEEEE
Confidence 999999999999998 99 999999999999999999888889888765 456899999995 89999999999999
Q ss_pred EecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccC
Q 014040 283 WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTP 362 (432)
Q Consensus 283 wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p 362 (432)
||.|.+||||.+.......|++++.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ......|
T Consensus 237 wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~P 308 (389)
T 3kci_A 237 WGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--------DDHVRRP 308 (389)
T ss_dssp EECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS--------CCCEEEE
T ss_pred EeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--------CccccCC
Confidence 99999999999998888999999999999999999999999999999999999999999999988 5667789
Q ss_pred eeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCCCceEee
Q 014040 363 QLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 428 (432)
Q Consensus 363 ~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~ 428 (432)
++++.+ ...+|++|+| |.+|+++|+++|+||+||.|++||||+|.. .....|++|+
T Consensus 309 ~~v~~l--~~~~v~~ia~-----G~~h~~al~~~G~v~~wG~n~~GqLG~g~~---~~~~~P~~v~ 364 (389)
T 3kci_A 309 RQVQGL--QGKKVIAIAT-----GSLHCVCCTEDGEVYTWGDNDEGQLGDGTT---NAIQRPRLVA 364 (389)
T ss_dssp EECGGG--TTCCEEEEEE-----CSSEEEEEETTCCEEEEECCTTSTTCSSSC---CCEEEEEECG
T ss_pred eEeccC--CCCCEEEEEe-----ccCeEEEECCCCCEEEeeCCCCCcCCCCCC---CCccCcEEec
Confidence 888877 5578999999 999999999999999999999999999965 3456787775
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.5e-68 Score=525.77 Aligned_cols=354 Identities=25% Similarity=0.383 Sum_probs=304.1
Q ss_pred eEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCC-cccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCC
Q 014040 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFG 125 (432)
Q Consensus 47 ~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~-~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~g 125 (432)
+...+..|+++++++|+||+||.|.+||||.++... ...|+++..+ .+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 12 ~~~~~~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~~G 89 (413)
T 1a12_A 12 SKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEG 89 (413)
T ss_dssp -CCCCCCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred hhhhccccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCCCC
Confidence 445568899999999999999999999999998654 5678888754 4899999999999999999999999999999
Q ss_pred CccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEe--cCCCcCCCCCCCCcc-cccccccccCCC
Q 014040 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPNDV-EPHPLLGTLENI 202 (432)
Q Consensus 126 qlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~-~p~~i~~~~~~~ 202 (432)
|||.+.........|.++.. ..+|++|+||.+|+++|+++|+||+||. |.+||||.+...... .|.++ +...
T Consensus 90 qLG~~~~~~~~~~~P~~v~l--~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v---~~~~ 164 (413)
T 1a12_A 90 ALGRDTSVEGSEMVPGKVEL--QEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV---QLDV 164 (413)
T ss_dssp TTCSCCCSTTGGGSCEECCC--CSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE---CCSS
T ss_pred CCCCCCCCCccccCCeEecC--CCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe---cCCC
Confidence 99998754456678888854 3379999999999999999999999998 899999988654432 36655 4456
Q ss_pred CEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC-----------CCCceeeehhhc---cCCccEEEEcCC
Q 014040 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD-----------EKHPRLIEQFQL---LNLQPVVVAAGA 268 (432)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~-----------~~~p~~~~~~~~---~~~~i~~i~~G~ 268 (432)
+|++|+||..|+++|++ +| +||+||.|.+||||.+.... ...|..+..... ...+|++|+||.
T Consensus 165 ~i~~ia~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~ 241 (413)
T 1a12_A 165 PVVKVASGNDHLVMLTA--DG-DLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA 241 (413)
T ss_dssp CEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET
T ss_pred CEEEEEecCceEEEEcC--CC-CEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC
Confidence 89999999999999998 99 99999999999999875432 135544433211 346799999999
Q ss_pred ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCC--CcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCC
Q 014040 269 WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHN 346 (432)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~ 346 (432)
+|+++|+++|+||+||.|.+||||.+.......|+++..+.+ .+|++|+||.+|+++|+++|+||+||.|.+||||.+
T Consensus 242 ~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g 321 (413)
T 1a12_A 242 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 321 (413)
T ss_dssp TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC
T ss_pred CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCC
Confidence 999999999999999999999999999888899999998877 679999999999999999999999999999999998
Q ss_pred CCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCCCceE
Q 014040 347 AIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERGNPER 426 (432)
Q Consensus 347 ~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~ 426 (432)
. .......|++|+.+ .+|++|+| |.+|+++|+++|+||+||.|.+||||+|.. .+...|++
T Consensus 322 ~-------~~~~~~~P~~v~~l----~~v~~v~~-----G~~hs~alt~~G~v~~wG~n~~gqLG~g~~---~~~~~P~~ 382 (413)
T 1a12_A 322 E-------GAEEKSIPTLISRL----PAVSSVAC-----GASVGYAVTKDGRVFAWGMGTNYQLGTGQD---EDAWSPVE 382 (413)
T ss_dssp T-------TCCCEEEEEECCSS----SSEEEEEE-----CSSEEEEEETTSCEEEEECCTTSTTCSSSC---SCEEEEEE
T ss_pred C-------CCccccCCEEeccc----CceeEEEE-----CcceEEEEeCCCCEEEecCCCCCCCCCCCC---CCcccCeE
Confidence 5 24557788888766 38999999 999999999999999999999999999965 34667887
Q ss_pred eec
Q 014040 427 VDI 429 (432)
Q Consensus 427 v~~ 429 (432)
|+.
T Consensus 383 v~~ 385 (413)
T 1a12_A 383 MMG 385 (413)
T ss_dssp CCS
T ss_pred ccc
Confidence 763
No 4
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=8.2e-68 Score=524.99 Aligned_cols=357 Identities=23% Similarity=0.324 Sum_probs=301.8
Q ss_pred eeecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCC-CCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEE
Q 014040 40 CCRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT-EEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYA 118 (432)
Q Consensus 40 ~~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~-~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~ 118 (432)
....++++|++|..|+++++++|+||+||.|.+||||.++. .....|+++..+. .|++|+||..|+++|+++|+||+
T Consensus 21 ~~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~ 98 (423)
T 3mvd_K 21 PPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYS 98 (423)
T ss_dssp --------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEE
T ss_pred CccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEE
Confidence 34568899999999999999999999999999999999975 4556788888776 58999999999999999999999
Q ss_pred EeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEe--cCCCcCCCCCCCCcccccccc
Q 014040 119 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW--GNDARLGHHTEPNDVEPHPLL 196 (432)
Q Consensus 119 ~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~--n~~gqlg~~~~~~~~~p~~i~ 196 (432)
||.|.+||||.+.........|.++... .+|++|+||.+|+++|+++|+||+||. |.+||||.+.......|.++
T Consensus 99 wG~n~~GqLG~~~~~~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~- 175 (423)
T 3mvd_K 99 FGCNDEGALGRDTSEDGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL- 175 (423)
T ss_dssp EECCSSSTTCSCCCSTTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEES-
T ss_pred eECCCCcCCCCCCcCCccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEe-
Confidence 9999999999998655567888888743 469999999999999999999999998 99999999887776666554
Q ss_pred cccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCC-----------CCCCceeeehhhccCCccEEEE
Q 014040 197 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT-----------DEKHPRLIEQFQLLNLQPVVVA 265 (432)
Q Consensus 197 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~-----------~~~~p~~~~~~~~~~~~i~~i~ 265 (432)
+...+|++|+||..|+++|++ +| +||+||.|.+||||.+... ....|..+... ...+|++|+
T Consensus 176 --~~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~--~~~~v~~i~ 248 (423)
T 3mvd_K 176 --MEGTVCCSIASGADHLVILTT--AG-KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIIT--RAKPFEAIW 248 (423)
T ss_dssp --STTCCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCT--TCCCEEEEE
T ss_pred --cCCCcEEEEecCCCeEEEEec--CC-eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeec--CCccEEEEE
Confidence 556789999999999999998 99 9999999999999997643 34577777643 345799999
Q ss_pred cCCceEEEE-eCCCCEEEEecCCCCcccCCCCC--CccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCC
Q 014040 266 AGAWHAAVV-GQDGRVCTWGWGRYGCLGHGNEE--CESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 342 (432)
Q Consensus 266 ~G~~h~~~l-t~~g~vy~wG~n~~gqlg~~~~~--~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gq 342 (432)
||.+|++++ +++|+||+||.|.+||||.+... ....|.++. ..+|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 249 ~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~Gq 325 (423)
T 3mvd_K 249 ATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGR 325 (423)
T ss_dssp EETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTCCEEEEECCGGGT
T ss_pred ECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCC
Confidence 999999999 69999999999999999996533 334555554 348999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcccCCccccCCccCC
Q 014040 343 LGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGIELVNNQTERG 422 (432)
Q Consensus 343 lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~ 422 (432)
||.+. .......|.+++.+. .+|++|+| |.+|++||+++|+||+||.|.+||||+|.. .+..
T Consensus 326 LG~g~-------~~~~~~~p~~v~~l~---~~v~~ia~-----G~~hs~alt~~G~v~~wG~n~~GqLG~g~~---~~~~ 387 (423)
T 3mvd_K 326 LGLGD-------VKDVVEKPTIVKKLT---EKIVSVGC-----GEVCSYAVTIDGKLYSWGSGVNNQLGVGDG---DDEL 387 (423)
T ss_dssp TCSSS-------CCSCEEEEEECTTCC---SCEEEEEE-----ETTEEEEEETTSCEEEEECCTTSCSSSSSS---CCEE
T ss_pred CCCCC-------ccccccCceEeccCC---CCEEEEEc-----CCCeEEEEcCCCCEEEECCCCCCCCCCCCC---CCcc
Confidence 99987 233456788877663 28999999 999999999999999999999999999965 4456
Q ss_pred CceEeec
Q 014040 423 NPERVDI 429 (432)
Q Consensus 423 ~P~~v~~ 429 (432)
.|++|..
T Consensus 388 ~P~~v~~ 394 (423)
T 3mvd_K 388 EPIVVVS 394 (423)
T ss_dssp EEEECCS
T ss_pred cCeEEeC
Confidence 7888863
No 5
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-67 Score=523.70 Aligned_cols=368 Identities=22% Similarity=0.351 Sum_probs=306.8
Q ss_pred eecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCC---CCcccccccCcC--CCCcEEEEEcCCCeEEEEecCCC
Q 014040 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTT---EEEWRPRPIRSL--QGIRIIQAAAGAGRTMLISDAGQ 115 (432)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~---~~~~~p~~i~~~--~~~~i~~v~~g~~~~~~lt~~g~ 115 (432)
..+.|....+...|+++++++|+||+||.|.+||||.++. .....|++++.+ ...+|++|+||..|+++|+++|+
T Consensus 8 ~~~~~~~~~~~~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~ 87 (473)
T 3of7_A 8 HMSHIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESN 87 (473)
T ss_dssp -CTTCCCCGGGGHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCC
T ss_pred hhhhhhhhcccccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCe
Confidence 4567888999999999999999999999999999999984 345667777755 56699999999999999999999
Q ss_pred EEEEeCCCCCCccCCCCCcc---------------------cccCCeeecc--c----CCccEEEEeecCceEEEEeCCC
Q 014040 116 VYAFGKDSFGEAEYGVQGTK---------------------LVTSPQLVES--L----KNIFVVQAAIGNFFTAVLSREG 168 (432)
Q Consensus 116 vy~~G~n~~gqlg~~~~~~~---------------------~~~~p~~v~~--~----~~~~I~~v~~G~~~~~~lt~~G 168 (432)
||+||.|++||||.+..... ....|.+++. + .+.+|++|+||..|+++|+++|
T Consensus 88 v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G 167 (473)
T 3of7_A 88 VWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNG 167 (473)
T ss_dssp EEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTS
T ss_pred EEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCC
Confidence 99999999999999864321 1567888875 4 3678999999999999999999
Q ss_pred CEEEEEe--cCCCcCCCCCCC--CcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC
Q 014040 169 RVYTFSW--GNDARLGHHTEP--NDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (432)
Q Consensus 169 ~vy~~G~--n~~gqlg~~~~~--~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (432)
+||+||. +..||||..... ....|.++.. +.+.+|++|+||..|+++|++ +| +||+||.|.++|||.+....
T Consensus 168 ~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~-l~~~~i~~va~G~~hs~alt~--~G-~v~~wG~n~~GqLG~~~~~~ 243 (473)
T 3of7_A 168 EVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPT-FSKYNIVQLAPGKDHILFLDE--EG-MVFAWGNGQQNQLGRKVMER 243 (473)
T ss_dssp CEEEEECEEETTEEEESBTTTBSCEEEEEECCC-CCSSCEEEEEECSSEEEEEET--TS-CEEEEECCTTSTTSSCCCGG
T ss_pred eEEEeeCCcCCCCccCCCCCCCccccCcEEccc-cCCCCEEEEEecCCeEEEEeC--CC-eEEEEeCCCCCCCCCCcccc
Confidence 9999998 678999985443 4456777665 667789999999999999998 99 99999999999999986543
Q ss_pred ----CCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCC----CccCcEEecccCCCcEEEE
Q 014040 245 ----EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE----CESVPKVVQALNDVKAIHV 316 (432)
Q Consensus 245 ----~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~----~~~~p~~i~~~~~~~i~~i 316 (432)
...|..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|+++..+.+.+|++|
T Consensus 244 ~~~~~~~p~~~~~-----~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~~i~~i 318 (473)
T 3of7_A 244 FRLKTLDPRPFGL-----RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318 (473)
T ss_dssp GTTTTCSCEECSC-----CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTCCEEEE
T ss_pred ccccccCceecCC-----cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCccEEEE
Confidence 345555532 479999999999999999999999999999999998743 4567999998888899999
Q ss_pred ecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCC------CCcccccccCeeeeecccccceEEEEeeeccccccceE
Q 014040 317 ATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQ------GNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHT 390 (432)
Q Consensus 317 ~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~------~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~ 390 (432)
+||.+|++||+++|+||+||.|.+||||.+...... .........|++++.+ .+|++|+| |.+|+
T Consensus 319 a~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~----~~v~~Ia~-----G~~hs 389 (473)
T 3of7_A 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNV----PKFKSVAA-----GSHHS 389 (473)
T ss_dssp EECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSS----CCEEEEEE-----CSSEE
T ss_pred EeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCC----CceEEEEe-----CCCeE
Confidence 999999999999999999999999999987621100 0112233455555533 37999999 99999
Q ss_pred EEEeCCCCEEEecCCCCcccCCccccCCccCCCceEee
Q 014040 391 FALTESGKLYAFGAGDKGQLGIELVNNQTERGNPERVD 428 (432)
Q Consensus 391 ~~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~v~ 428 (432)
+||+++|+||+||.|.+||||+|.. ..+...|++|+
T Consensus 390 ~al~~~G~vy~wG~n~~GqLG~g~~--~~~~~~P~~v~ 425 (473)
T 3of7_A 390 VAVAQNGIAYSWGFGETYAVGLGPF--EDDTEVPTRIK 425 (473)
T ss_dssp EEEETTSCEEEEECCTTCTTCCCSC--CSCEEEEEECC
T ss_pred EEEeCCCcEEEeeCCCCCCCCCCCC--CccccCCeEec
Confidence 9999999999999999999999962 34567788876
No 6
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=6.6e-66 Score=505.18 Aligned_cols=332 Identities=32% Similarity=0.525 Sum_probs=305.7
Q ss_pred cccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCC--cEEEEEcCCCeEEEEecCCCEEEEe
Q 014040 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGI--RIIQAAAGAGRTMLISDAGQVYAFG 120 (432)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~--~i~~v~~g~~~~~~lt~~g~vy~~G 120 (432)
.+|++|+||..|+++|+++|+||+||.|.+||||.++.+....|+++..+.+. ++++|+||..|+++|+++|+||+||
T Consensus 53 ~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 53 LRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp TCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred CceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 47899999999999999999999999999999999998888899999877765 4578899999999999999999999
Q ss_pred CCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccC
Q 014040 121 KDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLE 200 (432)
Q Consensus 121 ~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~ 200 (432)
.|.+||||.+. ......|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|..+.. +.
T Consensus 133 ~n~~GqLG~g~--~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~-~~ 209 (389)
T 3kci_A 133 EAEDGKLGHGN--RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEA-LQ 209 (389)
T ss_dssp CCGGGTTCSSS--CCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GT
T ss_pred CCCCCcCCCCC--CccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecc-cC
Confidence 99999999987 4566789999999888999999999999999999999999999999999999888888888876 77
Q ss_pred CCCEEEEEecc--cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCC
Q 014040 201 NIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 278 (432)
Q Consensus 201 ~~~i~~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g 278 (432)
+.+|++|+||. .|+++|++ +| +||+||.|.+||||.+.......|.++..+ .+.+|++|+||.+|+++|+++|
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~--~G-~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G~~hs~alt~~G 284 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTD--DD-TVWSWGDGDYGKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSG 284 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEET--TT-EEEEEECCGGGTTSSSSCCCEEEEEECGGG--TTSCEEEEEEETTEEEEEETTS
T ss_pred CCeEEEEEEcCCCcEEEEEcc--CC-EEEEEeCCCCCCCCCCCCCCccccEEeccc--CCCcEEEEeCCCCEEEEEeCCC
Confidence 88999999995 89999998 99 999999999999999998888888888765 3557999999999999999999
Q ss_pred CEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccc
Q 014040 279 RVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHAN 358 (432)
Q Consensus 279 ~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~ 358 (432)
+||+||.|.+||||.+.......|+++..+.+.+|++|+||.+|++||+++|+||+||.|.+||||.+. ...
T Consensus 285 ~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~--------~~~ 356 (389)
T 3kci_A 285 AVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGT--------TNA 356 (389)
T ss_dssp CEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSS--------CCC
T ss_pred eEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCC--------CCC
Confidence 999999999999999998888999999999999999999999999999999999999999999999988 667
Q ss_pred cccCeeeeecccccceEEEEeeeccccccceEEEEeCCC
Q 014040 359 VLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESG 397 (432)
Q Consensus 359 ~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G 397 (432)
...|++|+.+ ...+|++|+| |.+|++||++++
T Consensus 357 ~~~P~~v~~~--~~~~v~~va~-----G~~ht~al~~~~ 388 (389)
T 3kci_A 357 IQRPRLVAAL--QGKKVNRVAC-----GSAHTLAWSTSK 388 (389)
T ss_dssp EEEEEECGGG--TTSCCCEEEE-----ETTEEEEECC--
T ss_pred ccCcEEeccc--CCCCEEEEEe-----cCCcEEEEecCC
Confidence 7889998877 5578999999 999999998764
No 7
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.2e-64 Score=494.90 Aligned_cols=342 Identities=27% Similarity=0.506 Sum_probs=306.6
Q ss_pred HHHHHHHHHhccCChhheeee---eee-c---------------------ceeeecccceEecCCCeEEEEecCC-cEEE
Q 014040 13 EAERQDLKQKCGGSWKLVLRF---LLA-G---------------------EACCRRENSQAIAGPGHSIAVTSKG-VVYS 66 (432)
Q Consensus 13 ~~~~~~~~~~~g~~~~~~~~~---~~~-~---------------------~~~~~~~i~~i~~G~~~~~~l~~~g-~v~~ 66 (432)
....++..++||..|+.++.. ++. + ..+...+|++|+||..|+++|+++| +||+
T Consensus 13 ~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 13 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp --CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred CCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 334578889999999988875 110 0 0111237999999999999999986 9999
Q ss_pred EeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeeccc
Q 014040 67 FGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL 146 (432)
Q Consensus 67 ~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~ 146 (432)
||.|.+||||.++......|+++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+. ......|.++..+
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~p~~v~~~ 170 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQKIQAF 170 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--CCCEEEEEECGGG
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCC--CCCcccceEeccc
Confidence 99999999999998888899999988888999999999999999999999999999999999987 5566789999988
Q ss_pred CCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEE
Q 014040 147 KNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAV 226 (432)
Q Consensus 147 ~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~v 226 (432)
.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++.. +...+|++|+||..|+++|++ +| +|
T Consensus 171 ~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~-~~~~~i~~va~G~~ht~~l~~--~G-~v 246 (406)
T 4d9s_A 171 EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS-TGGEKMSMVACGWRHTISVSY--SG-AL 246 (406)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCC-STTCCEEEEEECSSEEEEEET--TC-CE
T ss_pred CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecc-cCCceEEEEEECCCcEEEEcC--CC-CE
Confidence 888999999999999999999999999999999999999888888888876 677789999999999999998 99 99
Q ss_pred EEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEec
Q 014040 227 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQ 306 (432)
Q Consensus 227 y~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~ 306 (432)
|+||.|.++|||.+.......|.++..+. +.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|+++.
T Consensus 247 ~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 324 (406)
T 4d9s_A 247 YTYGWSKYGQLGHGDLEDHLIPHKLEALS--NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVR 324 (406)
T ss_dssp EEEECCTTSTTCSSSCCCEEEEEECGGGT--TSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEEC
T ss_pred EEeeCCCCCCCCCCCCcCccccEEecccC--CCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEe
Confidence 99999999999999988888898887653 5679999999999999999999999999999999999988888999998
Q ss_pred ccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeeccc
Q 014040 307 ALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQ 370 (432)
Q Consensus 307 ~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~ 370 (432)
.+.+.+|++|+||.+|++||+++|+||+||.|.+||||.++ ......|++|+.+..
T Consensus 325 ~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~P~~v~~l~~ 380 (406)
T 4d9s_A 325 FPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGE--------SVDRNFPKIIEALSV 380 (406)
T ss_dssp CGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS--------CCCEEEEEECGGGCS
T ss_pred ccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCC--------CCCCcCCEEeeeecC
Confidence 88888999999999999999999999999999999999998 566778888877643
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=3.4e-63 Score=490.05 Aligned_cols=334 Identities=26% Similarity=0.409 Sum_probs=288.6
Q ss_pred cccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCC--CcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEe
Q 014040 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTE--EEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFG 120 (432)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~--~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G 120 (432)
.+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|+++... .+|++|+||..|+++|+++|+||+||
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG 136 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWG 136 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCC--CcEEEEecCCCeEEEEcCCCcEEEee
Confidence 579999999999999999999999999999999998763 45678887532 38999999999999999999999999
Q ss_pred C--CCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCC----------
Q 014040 121 K--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPN---------- 188 (432)
Q Consensus 121 ~--n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~---------- 188 (432)
. |.+||||.+.. ......|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 137 ~~~n~~GqlG~~~~-~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~ 213 (413)
T 1a12_A 137 SFRDNNGVIGLLEP-MKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLE 213 (413)
T ss_dssp CEEETTEEEESSBB-TBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHH
T ss_pred CCcCCCCccCcCCc-cccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCcccccccccccccc
Confidence 9 99999998863 2233457766 4466799999999999999999999999999999999875422
Q ss_pred -ccccccccccc----CCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEE
Q 014040 189 -DVEPHPLLGTL----ENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV 263 (432)
Q Consensus 189 -~~~p~~i~~~~----~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~ 263 (432)
...|..+.... ...+|++|+||..|+++|++ +| +||+||.|.++|||.+.......|..+..+.....+|++
T Consensus 214 ~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~--~G-~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ 290 (413)
T 1a12_A 214 RLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH--EG-HVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVG 290 (413)
T ss_dssp HHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET--TC-CEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEE
T ss_pred ccccCceEeeccccccCCccEEEEEeCCCEEEEEeC--CC-CEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEE
Confidence 13343333211 45679999999999999998 99 999999999999999998888889998877654467999
Q ss_pred EEcCCceEEEEeCCCCEEEEecCCCCcccCC-CCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCC
Q 014040 264 VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHG-NEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESAS 342 (432)
Q Consensus 264 i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~-~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gq 342 (432)
|+||.+|+++|+++|+||+||.|.+||||.+ .......|++++.+. +|++|+||.+|++||+++|+||+||.|.+||
T Consensus 291 ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gq 368 (413)
T 1a12_A 291 FSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQ 368 (413)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTST
T ss_pred EecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCC
Confidence 9999999999999999999999999999998 466678899998776 8999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCE
Q 014040 343 LGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKL 399 (432)
Q Consensus 343 lg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v 399 (432)
||.+. ......|++|......+.+|++|+| |.+|+++|+++|++
T Consensus 369 LG~g~--------~~~~~~P~~v~~~~~~~~~v~~v~~-----G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 369 LGTGQ--------DEDAWSPVEMMGKQLENRVVLSVSS-----GGQHTVLLVKDKEQ 412 (413)
T ss_dssp TCSSS--------CSCEEEEEECCSTTTTTEEEEEEEE-----CSSEEEEEEEECSC
T ss_pred CCCCC--------CCCcccCeEccccccCCCeEEEEee-----CCCcEEEEEecCCC
Confidence 99988 4667788888764335678999999 99999999998863
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-61 Score=479.45 Aligned_cols=356 Identities=23% Similarity=0.360 Sum_probs=291.9
Q ss_pred HHHHHHHHhccCChhheeee---eee-----------cc----------eeeecccceEecCCCeEEEEecCCcEEEEeC
Q 014040 14 AERQDLKQKCGGSWKLVLRF---LLA-----------GE----------ACCRRENSQAIAGPGHSIAVTSKGVVYSFGS 69 (432)
Q Consensus 14 ~~~~~~~~~~g~~~~~~~~~---~~~-----------~~----------~~~~~~i~~i~~G~~~~~~l~~~g~v~~~G~ 69 (432)
...+..+++||..|+.++.. ++. +. .....+|++|+||..|+++|+++|+||+||.
T Consensus 22 ~~~~~~~ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~ 101 (423)
T 3mvd_K 22 PKAKRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGC 101 (423)
T ss_dssp -------CCCCCCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred ccceeeEEecCCccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeEC
Confidence 34455678899999888765 110 00 0011368999999999999999999999999
Q ss_pred CCCCCcCCCCCCC--cccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeC--CCCCCccCCCCCcccccCCeeecc
Q 014040 70 NSSGQLGHGTTEE--EWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKLVTSPQLVES 145 (432)
Q Consensus 70 n~~gqlG~~~~~~--~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~--n~~gqlg~~~~~~~~~~~p~~v~~ 145 (432)
|.+||||.+.... ...|+++.... +|++|+||..|+++|+++|+||+||. |.+||||.+.. .... .++..
T Consensus 102 n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~--~~~~--~p~~~ 175 (423)
T 3mvd_K 102 NDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTID--GNKR--TPIDL 175 (423)
T ss_dssp CSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTT--BCEE--EEEES
T ss_pred CCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCC--CCCc--eeeEe
Confidence 9999999987654 46677776443 79999999999999999999999999 99999999863 2233 44444
Q ss_pred cCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCC-----------CcccccccccccCCCCEEEEEecccce
Q 014040 146 LKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEP-----------NDVEPHPLLGTLENIPVVQIAAGYCYL 214 (432)
Q Consensus 146 ~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~-----------~~~~p~~i~~~~~~~~i~~i~~g~~~~ 214 (432)
+...+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|..+.. ....+|++|+||..|+
T Consensus 176 ~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~-~~~~~v~~i~~g~~~~ 254 (423)
T 3mvd_K 176 MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLII-TRAKPFEAIWATNYCT 254 (423)
T ss_dssp STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECC-TTCCCEEEEEEETTEE
T ss_pred cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEee-cCCccEEEEEECCcEE
Confidence 667789999999999999999999999999999999997653 2345666654 5566899999999999
Q ss_pred eEEE-eeCCCCEEEEEccCCCCCcCCCCCCCCC--CceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcc
Q 014040 215 LALA-CQPSGMAVYSVGCGLGGKLGHGSRTDEK--HPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCL 291 (432)
Q Consensus 215 ~~l~-~~~~G~~vy~~G~n~~gqlg~~~~~~~~--~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gql 291 (432)
+++. . +| +||+||.|.++|||.+...... .|..+. ..+|++|+||.+|+++|+++|+||+||.|.+|||
T Consensus 255 ~~~~~~--~g-~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-----~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqL 326 (423)
T 3mvd_K 255 FMRESQ--TQ-VIWATGLNNFKQLAHETKGKEFALTPIKTE-----LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRL 326 (423)
T ss_dssp EEEETT--TC-CEEEEEECTTCTTSSCCTTCSEEEEEEEEC-----CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTT
T ss_pred EEEECC--CC-eEEEEeCCCCCcCCCCCCCCceeeeeEEcC-----CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCC
Confidence 9994 5 88 9999999999999996554433 344332 3479999999999999999999999999999999
Q ss_pred cCCCCCC-ccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeeccc
Q 014040 292 GHGNEEC-ESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQ 370 (432)
Q Consensus 292 g~~~~~~-~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~ 370 (432)
|.+.... ...|+++..+.+ +|++|+||.+|++||+++|+||+||.|.+||||.++ ......|++|.....
T Consensus 327 G~g~~~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--------~~~~~~P~~v~~~~~ 397 (423)
T 3mvd_K 327 GLGDVKDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGD--------GDDELEPIVVVSKNT 397 (423)
T ss_dssp CSSSCCSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSS--------SCCEEEEEECCSTTT
T ss_pred CCCCccccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCC--------CCCcccCeEEeCccc
Confidence 9998554 468899988877 899999999999999999999999999999999998 566778999986444
Q ss_pred ccceEEEEeeeccccccceEEEEeCCCC
Q 014040 371 VNERVVQISLTNSIYWNAHTFALTESGK 398 (432)
Q Consensus 371 ~~~~i~~i~~~~~~~G~~~~~~lt~~G~ 398 (432)
...+|++|+| |.+|+++|+++++
T Consensus 398 ~~~~v~~va~-----G~~ht~~l~~~~k 420 (423)
T 3mvd_K 398 QGKHMLLASG-----GGQHAIFLVKADK 420 (423)
T ss_dssp TTCCEEEEEE-----CSSEEEEEEECC-
T ss_pred CCCEEEEEEE-----CCCcEEEEEcccc
Confidence 5678999999 9999999998874
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-61 Score=484.08 Aligned_cols=330 Identities=23% Similarity=0.329 Sum_probs=281.7
Q ss_pred cccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCC-----------------------cccccccCc--C----C
Q 014040 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEE-----------------------EWRPRPIRS--L----Q 93 (432)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~-----------------------~~~p~~i~~--~----~ 93 (432)
.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|++++. + .
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~ 146 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAE 146 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHT
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccC
Confidence 4899999999999999999999999999999999987554 456777764 4 3
Q ss_pred CCcEEEEEcCCCeEEEEecCCCEEEEeC--CCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEE
Q 014040 94 GIRIIQAAAGAGRTMLISDAGQVYAFGK--DSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 171 (432)
Q Consensus 94 ~~~i~~v~~g~~~~~~lt~~g~vy~~G~--n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy 171 (432)
+.+|++|+||..|+++|+++|+||+||. +.+||||...........|.+++.+.+.+|++|+||..|+++|+++|+||
T Consensus 147 ~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~ 226 (473)
T 3of7_A 147 GHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVF 226 (473)
T ss_dssp TCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEE
T ss_pred CCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEE
Confidence 6799999999999999999999999998 68899999765556778899999998889999999999999999999999
Q ss_pred EEEecCCCcCCCCCCCCc----ccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC---
Q 014040 172 TFSWGNDARLGHHTEPND----VEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD--- 244 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~----~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~--- 244 (432)
+||.|.+||||.+..... ..|..+ ...+|++|+||..|+++|++ +| +||+||.|.+||||.+....
T Consensus 227 ~wG~n~~GqLG~~~~~~~~~~~~~p~~~----~~~~v~~Ia~G~~hs~alt~--~G-~v~~wG~n~~GqlG~~~~~~~~~ 299 (473)
T 3of7_A 227 AWGNGQQNQLGRKVMERFRLKTLDPRPF----GLRHVKYIASGENHCFALTK--DN-KLVSWGLNQFGQCGVSEDVEDGA 299 (473)
T ss_dssp EEECCTTSTTSSCCCGGGTTTTCSCEEC----SCCSEEEEEECSSEEEEEET--TS-CEEEEEECTTSTTCCCSCCCTTC
T ss_pred EEeCCCCCCCCCCccccccccccCceec----CCcceEEEecCCCeEEEEec--CC-CEEEeCCCCCCCcCCCCcccCCc
Confidence 999999999998865432 233333 22579999999999999998 99 99999999999999987653
Q ss_pred -CCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCC--------------CccCcEEecccC
Q 014040 245 -EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEE--------------CESVPKVVQALN 309 (432)
Q Consensus 245 -~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~--------------~~~~p~~i~~~~ 309 (432)
...|..+..+ .+.+|++|+||.+|+++|+++|+||+||.|.+||||.+... ....|.++..+.
T Consensus 300 ~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~ 377 (473)
T 3of7_A 300 LVTKPKRLALP--DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP 377 (473)
T ss_dssp EEEEEEECCCC--TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC
T ss_pred eeecccccccc--CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC
Confidence 3456666643 34689999999999999999999999999999999986421 223455555433
Q ss_pred CCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccce
Q 014040 310 DVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAH 389 (432)
Q Consensus 310 ~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~ 389 (432)
+|++|+||.+|++||+++|+||+||.|.+||||.+. .......|++|+.+.....+|++|+| |..|
T Consensus 378 --~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~-------~~~~~~~P~~v~~~~~~~~~v~~v~c-----G~~~ 443 (473)
T 3of7_A 378 --KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP-------FEDDTEVPTRIKNTATQDHNIILVGC-----GGQF 443 (473)
T ss_dssp --CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCS-------CCSCEEEEEECCCTTTTTEEEEEEEE-----CSSE
T ss_pred --ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCC-------CCccccCCeEecccccCCCeEEEEee-----CCCe
Confidence 799999999999999999999999999999999987 35567889999876556788999999 9999
Q ss_pred EEEEeC
Q 014040 390 TFALTE 395 (432)
Q Consensus 390 ~~~lt~ 395 (432)
++++..
T Consensus 444 s~~~~~ 449 (473)
T 3of7_A 444 SVSGGV 449 (473)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999965
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.7e-51 Score=384.17 Aligned_cols=253 Identities=23% Similarity=0.310 Sum_probs=213.7
Q ss_pred cccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCC
Q 014040 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 122 (432)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n 122 (432)
.+|++|+||..|+++|+ +|+||+||.|.+||||. |.+. ..+|++|+||..|+++|+ ||+||+||.|
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~--------p~~~----~~~i~~ia~G~~hs~~l~-~G~v~~wG~n 89 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM--------PAAT----QSGVDAIAAGNYHSLALK-DGEVIAWGGN 89 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC--------CGGG----GSCCCEEEECSSEEEEEE-TTEEEEEECC
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC--------CccC----CCCEEEEEeCCCEEEEEE-CCEEEEeeCC
Confidence 48999999999999998 99999999999999995 2221 237999999999999996 9999999999
Q ss_pred CCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCC
Q 014040 123 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENI 202 (432)
Q Consensus 123 ~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 202 (432)
.+||||.+ .++ ..+|++|+||.+|+++|+ +|+||+||.|.+||||... ....
T Consensus 90 ~~Gqlg~P----------~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~-------------~~~~ 141 (282)
T 3qhy_B 90 EDGQTTVP----------AEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA-------------EAQS 141 (282)
T ss_dssp TTSTTCCC----------GGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG-------------GGGS
T ss_pred CCCCCCCC----------ccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc-------------cCCC
Confidence 99999853 222 236999999999999999 9999999999999998421 1224
Q ss_pred CEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEE
Q 014040 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 282 (432)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~ 282 (432)
+|++|+||..|+++|+ +| +||+||.|.++||+. |..+ ..+|++|+||.+|+++| ++|+||+
T Consensus 142 ~i~~i~~G~~~~~~l~---~G-~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 142 GVTALDGGVYTALAVK---NG-GVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIA 202 (282)
T ss_dssp SEEEEEECSSEEEEEE---TT-EEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEE
T ss_pred CeEEEEcccCEEEEEE---CC-EEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEE
Confidence 5999999999999998 78 999999999999983 2222 34799999999999999 8999999
Q ss_pred EecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccC
Q 014040 283 WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTP 362 (432)
Q Consensus 283 wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p 362 (432)
||.|.+||||.+. +.+ .+|++|+||.+|+++|+ +|+||+||.|.++|++..
T Consensus 203 wG~n~~gqlg~p~----------~~~--~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~---------------- 253 (282)
T 3qhy_B 203 WGDNRYKQTTVPT----------EAL--SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ---------------- 253 (282)
T ss_dssp EECCTTSTTCCCG----------GGG--SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------
T ss_pred EECCCCCCCCCCc----------ccC--CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------
Confidence 9999999999643 112 26899999999999999 999999999998887642
Q ss_pred eeeeecccccceEEEEeeeccccccceEEEEeCCCCEE
Q 014040 363 QLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 400 (432)
Q Consensus 363 ~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~ 400 (432)
..|++|+| |..|++||+++++.+
T Consensus 254 ----------~~v~~iaa-----G~~h~~al~~~~~~~ 276 (282)
T 3qhy_B 254 ----------SGVSSIEA-----GPNAAYALKGGSGSG 276 (282)
T ss_dssp ----------SCEEEEEE-----CSSCEEEEEC-----
T ss_pred ----------CCcEEEEE-----CcCeEEEEecCCCCC
Confidence 26899999 999999999988654
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.3e-50 Score=376.54 Aligned_cols=251 Identities=21% Similarity=0.265 Sum_probs=211.6
Q ss_pred cEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCee
Q 014040 63 VVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQL 142 (432)
Q Consensus 63 ~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~ 142 (432)
+||+||+|...++. +.+++.+. +|++|+||..|+++|+ +|+||+||.|.+||||.+.
T Consensus 3 ~v~~WG~n~~~~~~---------~~p~~~~~--~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~----------- 59 (282)
T 3qhy_B 3 SVVAWGGNNDWGEA---------TVPAEAQS--GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA----------- 59 (282)
T ss_dssp EEEEECSCCTTSTT---------CCCGGGSS--SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCG-----------
T ss_pred EEEEeCCCCCcCcc---------cCCccccC--CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCc-----------
Confidence 69999999755443 22333333 7999999999999998 9999999999999998532
Q ss_pred ecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCC
Q 014040 143 VESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPS 222 (432)
Q Consensus 143 v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~ 222 (432)
....+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||..|+++|+ +
T Consensus 60 ---~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~--------P~~~-----~~~v~~ia~G~~hs~al~---~ 119 (282)
T 3qhy_B 60 ---ATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV--------PAEA-----RSGVDAIAAGAWASYALK---D 119 (282)
T ss_dssp ---GGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC--------CGGG-----SSSEEEEEEETTEEEEEE---T
T ss_pred ---cCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC--------Cccc-----CCCeEEEECcCCEEEEEe---C
Confidence 11236999999999999996 99999999999999995 3333 236999999999999998 8
Q ss_pred CCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCc
Q 014040 223 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVP 302 (432)
Q Consensus 223 G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p 302 (432)
| +||+||.|.++||+.. .. ...+|++|+||.+|+++|+ +|+||+||.|.+||||.+
T Consensus 120 G-~v~~wG~n~~gqlg~~--------~~------~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~p-------- 175 (282)
T 3qhy_B 120 G-KVIAWGDDSDGQTTVP--------AE------AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVP-------- 175 (282)
T ss_dssp T-EEEEEECCTTSTTSCC--------GG------GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCC--------
T ss_pred C-eEEEecCCCCCcCCCC--------cc------CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCCc--------
Confidence 8 9999999999999742 11 2246899999999999999 899999999999999842
Q ss_pred EEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeec
Q 014040 303 KVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 382 (432)
Q Consensus 303 ~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~ 382 (432)
..+ ..+|++|+||.+|+++| ++|+||+||.|.++|||.+. . ...+|++|+|
T Consensus 176 ~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~--------~--------------~~~~v~~i~~-- 226 (282)
T 3qhy_B 176 AEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT--------E--------------ALSGVSAIAS-- 226 (282)
T ss_dssp GGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG--------G--------------GGSSCCEEEE--
T ss_pred eec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc--------c--------------cCCCceEEEc--
Confidence 111 34799999999999999 89999999999999999654 1 1246899999
Q ss_pred cccccceEEEEeCCCCEEEecCCCCcccCCc
Q 014040 383 SIYWNAHTFALTESGKLYAFGAGDKGQLGIE 413 (432)
Q Consensus 383 ~~~G~~~~~~lt~~G~v~~wG~n~~gqLG~g 413 (432)
|.+|+++|+ +|+||+||.|+++|++..
T Consensus 227 ---G~~h~~al~-~g~v~~wG~n~~gq~~v~ 253 (282)
T 3qhy_B 227 ---GEWYSLALK-NGKVIAWGSSRTAPSSVQ 253 (282)
T ss_dssp ---CSSCEEEEE-TTEEEEESTTCCCCGGGS
T ss_pred ---CCCEEEEEE-CCEEEEecCCCCccccCC
Confidence 999999999 999999999999999975
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.72 E-value=0.04 Score=53.29 Aligned_cols=284 Identities=7% Similarity=-0.006 Sum_probs=156.7
Q ss_pred cccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCC
Q 014040 43 RENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKD 122 (432)
Q Consensus 43 ~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n 122 (432)
..|..++......+.-..||.|..|=.... .....+. .....|..++......+.-..||.|..|-..
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-----------~~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTL-----------ECKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSC-----------CEEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEESS
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCC-----------eEEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEECC
Confidence 456677776677777778888888843211 0111111 1233688888766677777889999999654
Q ss_pred CCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCC
Q 014040 123 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENI 202 (432)
Q Consensus 123 ~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 202 (432)
..-. ...+. .....|..++......+.-..+|.|..|-..... ......... ....
T Consensus 202 ~~~~-------------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~---------~~~~~~~~~-~~~~ 257 (435)
T 1p22_A 202 TGEM-------------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT---------DITLRRVLV-GHRA 257 (435)
T ss_dssp SCCE-------------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSS---------CCEEEEEEC-CCSS
T ss_pred CCcE-------------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCC---------CceeeeEec-CCCC
Confidence 2110 01111 1234588888887777788899999988433211 000101111 2234
Q ss_pred CEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEE
Q 014040 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCT 282 (432)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~ 282 (432)
.|..++......+.... +| .|..|-... ...+..+......|..+.......+.-..||.|..
T Consensus 258 ~v~~~~~~~~~l~s~~~--dg-~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 258 AVNVVDFDDKYIVSASG--DR-TIKVWNTST--------------CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRL 320 (435)
T ss_dssp CEEEEEEETTEEEEEET--TS-EEEEEETTT--------------CCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred cEEEEEeCCCEEEEEeC--CC-eEEEEECCc--------------CcEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence 57777775554444444 78 999984321 11222223334456666666677777788999999
Q ss_pred EecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccC
Q 014040 283 WGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTP 362 (432)
Q Consensus 283 wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p 362 (432)
|-..... ....+. .....|..++....+.+.-..+|.|.+|-....... ......
T Consensus 321 wd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-------------~~~~~~ 375 (435)
T 1p22_A 321 WDIECGA-----------CLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDP-------------RAPAGT 375 (435)
T ss_dssp EETTTCC-----------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTST-------------TSCTTT
T ss_pred EECCCCC-----------EEEEEe-CCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCCc-------------cccccc
Confidence 9653311 011111 123357777776666666688999999964221100 000011
Q ss_pred eeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcc
Q 014040 363 QLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQ 409 (432)
Q Consensus 363 ~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gq 409 (432)
..+..+..-...|..++. .....+.-..||.|..|-..+..+
T Consensus 376 ~~~~~~~~h~~~v~~l~~-----~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 376 LCLRTLVEHSGRVFRLQF-----DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp TEEEEECCCSSCCCCEEE-----CSSCEEECCSSSEEEEEC------
T ss_pred hheeeccCCCCCeEEEEe-----CCCEEEEEeCCCEEEEEECCCCCC
Confidence 133333333456677776 445555667899999998766443
No 14
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.39 E-value=0.11 Score=50.20 Aligned_cols=269 Identities=7% Similarity=-0.039 Sum_probs=148.1
Q ss_pred ceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCC
Q 014040 46 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFG 125 (432)
Q Consensus 46 ~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~g 125 (432)
..++.-....+.-..||.|..|-....- ....+. .....|..++......+.-..||.|..|-.....
T Consensus 123 ~~~~~~g~~l~sg~~dg~i~vwd~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 190 (445)
T 2ovr_B 123 TCLQFCGNRIVSGSDDNTLKVWSAVTGK-----------CLRTLV-GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE 190 (445)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTCC-----------EEEECC-CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCEEEEEECCCcEEEEECCCCc-----------EEEEEc-CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCc
Confidence 3444445555666678888888543210 011111 1223577777667777777889999999643210
Q ss_pred CccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEE
Q 014040 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVV 205 (432)
Q Consensus 126 qlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~ 205 (432)
. ...+. .....|..++......+.-..+|.|..|-..... +.... ......|.
T Consensus 191 ~-------------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~------------~~~~~-~~~~~~v~ 243 (445)
T 2ovr_B 191 C-------------IHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ------------CLHVL-MGHVAAVR 243 (445)
T ss_dssp E-------------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC------------EEEEE-ECCSSCEE
T ss_pred E-------------EEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc------------EEEEE-cCCcccEE
Confidence 0 01111 1234577777777777778899999988433210 11111 12233466
Q ss_pred EEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEec
Q 014040 206 QIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 206 ~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~ 285 (432)
.++......+.-.. +| .|+.|-... ...+..+......|..+.....+.+.-..+|.|..|-.
T Consensus 244 ~~~~~~~~l~~~~~--dg-~i~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~ 306 (445)
T 2ovr_B 244 CVQYDGRRVVSGAY--DF-MVKVWDPET--------------ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306 (445)
T ss_dssp EEEECSSCEEEEET--TS-CEEEEEGGG--------------TEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEET
T ss_pred EEEECCCEEEEEcC--CC-EEEEEECCC--------------CcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEEC
Confidence 77664444444443 77 888884221 12222333334467777776777777788999999965
Q ss_pred CCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeee
Q 014040 286 GRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLV 365 (432)
Q Consensus 286 n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v 365 (432)
..... ...+. .....+..++......+.-..+|.|..|-..... ....+
T Consensus 307 ~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~ 355 (445)
T 2ovr_B 307 ETGNC-----------IHTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ-------------------CLQTL 355 (445)
T ss_dssp TTCCE-----------EEEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------------------EEEEE
T ss_pred CCCCE-----------EEEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc-------------------EEEEE
Confidence 33111 11111 1222455566666666666788999999643210 00111
Q ss_pred eecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCC
Q 014040 366 TSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 406 (432)
Q Consensus 366 ~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~ 406 (432)
.........|..++. .....+.-..+|.|..|-..+
T Consensus 356 ~~~~~~~~~v~~~~~-----~~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 356 QGPNKHQSAVTCLQF-----NKNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp CSTTSCSSCEEEEEE-----CSSEEEEEETTSEEEEEETTT
T ss_pred ccCCCCCCCEEEEEE-----CCCEEEEEeCCCeEEEEECCC
Confidence 111112345677776 555666667788888886554
No 15
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.07 E-value=0.24 Score=47.69 Aligned_cols=229 Identities=10% Similarity=0.002 Sum_probs=131.0
Q ss_pred cEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEe
Q 014040 96 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 175 (432)
Q Consensus 96 ~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~ 175 (432)
.|..++......+.-..||.|..|-.... + ....+. .....|..++......+.-..||.|..|-.
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~-~------------~~~~~~-~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTL-E------------CKRILT-GHTGSVLCLQYDERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSC-C------------EEEEEC-CCSSCEEEEECCSSEEEEEETTSCEEEEES
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCC-e------------EEEEEc-CCCCcEEEEEECCCEEEEEcCCCeEEEEEC
Confidence 57777777777777788899999854321 0 001111 123457888886666677788999998854
Q ss_pred cCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhh
Q 014040 176 GNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQ 255 (432)
Q Consensus 176 n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~ 255 (432)
.... ..... ......|..++......+.-.. +| .|+.|-..... .......+.
T Consensus 201 ~~~~------------~~~~~-~~h~~~v~~l~~~~~~l~s~s~--dg-~i~vwd~~~~~-----------~~~~~~~~~ 253 (435)
T 1p22_A 201 NTGE------------MLNTL-IHHCEAVLHLRFNNGMMVTCSK--DR-SIAVWDMASPT-----------DITLRRVLV 253 (435)
T ss_dssp SSCC------------EEEEE-CCCCSCEEEEECCTTEEEEEET--TS-CEEEEECSSSS-----------CCEEEEEEC
T ss_pred CCCc------------EEEEE-cCCCCcEEEEEEcCCEEEEeeC--CC-cEEEEeCCCCC-----------CceeeeEec
Confidence 3210 00000 1223457777776554444443 78 88888432111 111111222
Q ss_pred ccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEE
Q 014040 256 LLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSF 335 (432)
Q Consensus 256 ~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~ 335 (432)
.....|..++....+.+.-..||.|..|-..... ....+. .....|..++......+.-..+|.|..|
T Consensus 254 ~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~g~~dg~i~iw 321 (435)
T 1p22_A 254 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-----------FVRTLN-GHKRGIACLQYRDRLVVSGSSDNTIRLW 321 (435)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-----------EEEEEc-CCCCcEEEEEeCCCEEEEEeCCCeEEEE
Confidence 2344566777766777777889999999643211 011111 1223566666666666667888999999
Q ss_pred eCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecC
Q 014040 336 GCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGA 404 (432)
Q Consensus 336 G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~ 404 (432)
-.... ..+..+..-...|..++. .....+.-..+|.|..|-.
T Consensus 322 d~~~~----------------------~~~~~~~~h~~~v~~~~~-----~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 322 DIECG----------------------ACLRVLEGHEELVRCIRF-----DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ETTTC----------------------CEEEEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEEH
T ss_pred ECCCC----------------------CEEEEEeCCcCcEEEEEe-----cCCEEEEEeCCCcEEEEEC
Confidence 64321 112222223456777776 5566666678999999953
No 16
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.72 E-value=0.42 Score=45.30 Aligned_cols=276 Identities=12% Similarity=-0.026 Sum_probs=138.7
Q ss_pred cceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC--CCeEEEEecCCCEEEEeCC
Q 014040 45 NSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKD 122 (432)
Q Consensus 45 i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~~G~n 122 (432)
+..++......++...+|.|+.|-....- ....+.......|..|+.. ..+.++-..+|.|..|-..
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 164 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE 164 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence 44466556778888899999999653210 1111111123356666553 3455566678999998643
Q ss_pred CCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCC
Q 014040 123 SFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENI 202 (432)
Q Consensus 123 ~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 202 (432)
.... ...+. .....|..++......+.-..+|.|+.|-..... .+..... ....
T Consensus 165 ~~~~-------------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~~~~~~-~~~~ 218 (401)
T 4aez_A 165 SQTK-------------LRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQIGTLQ-GHSS 218 (401)
T ss_dssp TCCE-------------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEEE-CCSS
T ss_pred CCeE-------------EEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ceeeEEc-CCCC
Confidence 2111 01111 2234578888877777778889999988533211 0111111 2233
Q ss_pred CEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC--ceEEEEe---CC
Q 014040 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAAVVG---QD 277 (432)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~--~h~~~lt---~~ 277 (432)
.|..++...+...+++-..+| .|+.|-... ...+..+......|..++... .+.++.. .+
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~~--------------~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d 283 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDN-VVQIWDARS--------------SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTS-CEEEEETTC--------------SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTT
T ss_pred CeeEEEEcCCCCEEEEEeCCC-eEEEccCCC--------------CCccEEecCCcceEEEEEECCCCCCEEEEecCCCC
Confidence 577777665554455544477 888885332 111111222233444555433 3444433 58
Q ss_pred CCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEe----cCCCEEEEeCCCCCCCCCCCCcCCCC
Q 014040 278 GRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVS----EDGDVYSFGCGESASLGHNAIADGQG 353 (432)
Q Consensus 278 g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt----~~g~vy~~G~n~~gqlg~~~~~~~~~ 353 (432)
|.|+.|-..... ....+. ....|..++...+...++. .+|.|++|-....
T Consensus 284 ~~i~i~d~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~------------- 337 (401)
T 4aez_A 284 KQIHFWNAATGA-----------RVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS------------- 337 (401)
T ss_dssp CEEEEEETTTCC-----------EEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-------------
T ss_pred CEEEEEECCCCC-----------EEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-------------
Confidence 889988643210 011111 1224555554433333322 4788888853210
Q ss_pred CcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCc
Q 014040 354 NRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKG 408 (432)
Q Consensus 354 ~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~g 408 (432)
....+..+..-...|..++... .....+....||.|..|=..+..
T Consensus 338 -------~~~~~~~~~~h~~~v~~~~~s~---dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 338 -------GLTKQVDIPAHDTRVLYSALSP---DGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp -------EEEEEEEEECCSSCCCEEEECT---TSSEEEEECTTSEEEEEECCC--
T ss_pred -------cceeEEEecCCCCCEEEEEECC---CCCEEEEEeCCCcEEEEECCCCc
Confidence 0111111222234566666521 12234445678999999766533
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.70 E-value=0.0045 Score=54.05 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=69.5
Q ss_pred cEEEEecCCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEE
Q 014040 312 KAIHVATGDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTF 391 (432)
Q Consensus 312 ~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~ 391 (432)
.|.+|+....|+.++--+++++.||++++||+-.+. -..+..++.+ |...++
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~-----------------------tagPfla~~A-----G~~fTV 361 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD-----------------------HAGPYIQLAA-----GHNFTV 361 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG-----------------------GGCCEEEEEE-----CSSEEE
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCC-----------------------CcchHHhHhc-----cCCeEE
Confidence 678889999999999999999999999999998877 3457889999 999999
Q ss_pred EEeCCCCEEEecCCCCcccCCccccCCccCCCceE
Q 014040 392 ALTESGKLYAFGAGDKGQLGIELVNNQTERGNPER 426 (432)
Q Consensus 392 ~lt~~G~v~~wG~n~~gqLG~g~~~~~~~~~~P~~ 426 (432)
-+..-..+--||+.-+..|=-.-+..+.+..+|++
T Consensus 362 TVn~~nyv~FWGDSPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 362 TVNTLNQVMFWGDSPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp EEETTCCEEEEECCTTSTTCCTTCCSBCCCCCCCC
T ss_pred EEeceeeEEEecCCCCcceeecCccceeeeccCCC
Confidence 99999999999988777663221224455566654
No 18
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.64 E-value=0.0049 Score=53.78 Aligned_cols=72 Identities=22% Similarity=0.170 Sum_probs=60.4
Q ss_pred CccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCC
Q 014040 259 LQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 259 ~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n 338 (432)
..|..|+.-+.|..++--+++||.+|+++.||+-.+.... +..++++|.++++-+..-+.+-.||..
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag-------------Pfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG-------------PYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC-------------CEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCcc-------------hHHhHhccCCeEEEEeceeeEEEecCC
Confidence 5677899999999999999999999999999997543221 568899999999999999999999987
Q ss_pred CCCCC
Q 014040 339 ESASL 343 (432)
Q Consensus 339 ~~gql 343 (432)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 66554
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.44 E-value=0.23 Score=51.05 Aligned_cols=56 Identities=13% Similarity=0.187 Sum_probs=32.0
Q ss_pred CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCC-----eeecccCCccEEEEeecCceEEEEeCCCCEEEEEe
Q 014040 105 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSP-----QLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 175 (432)
Q Consensus 105 ~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p-----~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~ 175 (432)
.+++++..+|+||++|-..... .....| ..+..+.. .-..|++++..+|+||++|-
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~--------v~~yd~~t~~W~~~~~~~~-------~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKK--------TSLYDSSSDSWIPGPDMQV-------ARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTC--------EEEEEGGGTEEEECCCCSS-------CCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCCc--------eEEecCcCCceeECCCCCc-------cccccceEEecCCeEEEEeC
Confidence 3456777899999999643221 111111 11111111 12357888877999999985
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.34 E-value=0.58 Score=42.42 Aligned_cols=282 Identities=12% Similarity=0.056 Sum_probs=132.5
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC-CeEEEEecCCCEEEEeCCCCCCccC
Q 014040 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA-GRTMLISDAGQVYAFGKDSFGEAEY 129 (432)
Q Consensus 51 G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~-~~~~~lt~~g~vy~~G~n~~gqlg~ 129 (432)
+.-..+.++.||++++++......+...... ...+.... .....|..++... ...++...+|.|..|-.......
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~-- 85 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTL-NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK-- 85 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEE-CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC--
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceec-cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce--
Confidence 3446778889999999887655433321111 11111111 1222455554432 22334444788888865432110
Q ss_pred CCCCcccccCCeeec-ccCCccEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEE
Q 014040 130 GVQGTKLVTSPQLVE-SLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQ 206 (432)
Q Consensus 130 ~~~~~~~~~~p~~v~-~~~~~~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~ 206 (432)
.....+. ......|..++...+ ..+.-..+|.|+.|-.... .... ..........|..
T Consensus 86 --------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~----------~~~~-~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 86 --------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP----------TPRI-KAELTSSAPACYA 146 (337)
T ss_dssp --------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC------------EE-EEEEECSSSCEEE
T ss_pred --------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC----------Ccce-eeecccCCCceEE
Confidence 0001111 012334666666543 3445567888888843221 0001 1111123344777
Q ss_pred EEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcC--CceEEEEeCCCCEEEEe
Q 014040 207 IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWG 284 (432)
Q Consensus 207 i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG 284 (432)
++...+...+++...+| .|+.|-... ...+..+......|..++.. ....+....+|.|+.|-
T Consensus 147 ~~~~~~~~~l~~~~~dg-~v~~~d~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d 211 (337)
T 1gxr_A 147 LAISPDSKVCFSCCSDG-NIAVWDLHN--------------QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211 (337)
T ss_dssp EEECTTSSEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEECCCCCEEEEEeCCC-cEEEEeCCC--------------CceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEE
Confidence 66655444444433477 888884321 11222222233345555553 33555567888999986
Q ss_pred cCCCCcccCCCCCCccCcEEecccCCCcEEEEec--CCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccC
Q 014040 285 WGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT--GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTP 362 (432)
Q Consensus 285 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p 362 (432)
..... ....+. ....+..++. .....++-..+|.|+.|-.....
T Consensus 212 ~~~~~-----------~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~--------------------- 257 (337)
T 1gxr_A 212 LREGR-----------QLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD--------------------- 257 (337)
T ss_dssp TTTTE-----------EEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC---------------------
T ss_pred CCCCc-----------eEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC---------------------
Confidence 43211 011111 1123444443 23344444667888888543210
Q ss_pred eeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCcc
Q 014040 363 QLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQ 409 (432)
Q Consensus 363 ~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gq 409 (432)
.. .+......+..++... .....+....+|.+..|-......
T Consensus 258 -~~-~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 258 -KY-QLHLHESCVLSLKFAY---CGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp -EE-EECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCE
T ss_pred -eE-EEcCCccceeEEEECC---CCCEEEEecCCCcEEEEECCCCeE
Confidence 01 1111234566666521 123444456788888887655433
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.31 E-value=0.82 Score=43.87 Aligned_cols=227 Identities=8% Similarity=-0.084 Sum_probs=124.9
Q ss_pred ccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCC
Q 014040 44 ENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 44 ~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~ 123 (432)
.|..++.-....+.-..||.|..|=.... .....+. .....|..++......+.-..||.|+.|-...
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~ 228 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETG-----------ECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESSS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcC-----------cEEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECCC
Confidence 34444444445555566777777743211 0011111 12336777777777788888899999996442
Q ss_pred CCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCC
Q 014040 124 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (432)
Q Consensus 124 ~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 203 (432)
.. +..........|..++......+.-..+|.|..|-.... .+.... ......
T Consensus 229 ~~--------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~-~~~~~~ 281 (445)
T 2ovr_B 229 GQ--------------CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE------------TCLHTL-QGHTNR 281 (445)
T ss_dssp CC--------------EEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT------------EEEEEE-CCCSSC
T ss_pred Cc--------------EEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC------------cEeEEe-cCCCCc
Confidence 11 001111123457777776677777888999998843221 011110 122335
Q ss_pred EEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEE
Q 014040 204 VVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTW 283 (432)
Q Consensus 204 i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~w 283 (432)
|..++....+.+.-.. +| .|+.|-.... ..+..+......+..+....+..+.-..+|.|..|
T Consensus 282 v~~~~~~~~~l~~~~~--d~-~i~i~d~~~~--------------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 282 VYSLQFDGIHVVSGSL--DT-SIRVWDVETG--------------NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344 (445)
T ss_dssp EEEEEECSSEEEEEET--TS-CEEEEETTTC--------------CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred eEEEEECCCEEEEEeC--CC-eEEEEECCCC--------------CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEE
Confidence 7777774444444343 77 8888843221 11222222333455666666677777889999999
Q ss_pred ecCCCCcccCCCCCCccCcEEecc--cCCCcEEEEecCCCcEEEEecCCCEEEEeC
Q 014040 284 GWGRYGCLGHGNEECESVPKVVQA--LNDVKAIHVATGDYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 284 G~n~~gqlg~~~~~~~~~p~~i~~--~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~ 337 (432)
-..... ....+.. .....|..++....+.+.-..+|.|..|-.
T Consensus 345 d~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 345 DIKTGQ-----------CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ETTTCC-----------EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred ECCCCc-----------EEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEEC
Confidence 653211 1111111 122357777776666666788999999964
No 22
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.24 E-value=0.7 Score=42.43 Aligned_cols=211 Identities=6% Similarity=-0.067 Sum_probs=103.4
Q ss_pred ecccceEecC------CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccC-cCCCCcEEEEEcCCC------eEE
Q 014040 42 RRENSQAIAG------PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIR-SLQGIRIIQAAAGAG------RTM 108 (432)
Q Consensus 42 ~~~i~~i~~G------~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~-~~~~~~i~~v~~g~~------~~~ 108 (432)
..+|..|+.- ....++-..+++|..|=......+ ....... ......|..++.... ..+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------RLLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------EeeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 3466666654 555777777889999854422111 0111111 112235666554333 455
Q ss_pred EEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC---ceEEEEeCCCCEEEEEecCCCcCCCCC
Q 014040 109 LISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHT 185 (432)
Q Consensus 109 ~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~ 185 (432)
.-..||.|..|-.... + . ...+. .....|..++... ...+.-..+|.|+.|-....
T Consensus 90 ~~~~dg~i~v~d~~~~-~---------~---~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------- 148 (366)
T 3k26_A 90 VAGSRGIIRIINPITM-Q---------C---IKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------- 148 (366)
T ss_dssp EEETTCEEEEECTTTC-C---------E---EEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-------
T ss_pred EecCCCEEEEEEchhc-e---------E---eeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-------
Confidence 5667888999854321 0 0 01111 1234577777653 44555678999998843221
Q ss_pred CCCcccccccc--cccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcC-------CCCC--CCCCCce-----
Q 014040 186 EPNDVEPHPLL--GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLG-------HGSR--TDEKHPR----- 249 (432)
Q Consensus 186 ~~~~~~p~~i~--~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg-------~~~~--~~~~~p~----- 249 (432)
.+.... .......|..++...+...+++-..+| .|+.|-......+. .... .....+.
T Consensus 149 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 149 -----TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp -----EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred -----eEEEEecccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 011111 012334577777765544445444477 89988543211100 0000 0000000
Q ss_pred eeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCC
Q 014040 250 LIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 250 ~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~ 287 (432)
...........|..++......+.-..+|.|..|-...
T Consensus 223 ~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp SEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 00001112334555554456677778899999997644
No 23
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.99 E-value=1.8 Score=38.51 Aligned_cols=186 Identities=14% Similarity=0.030 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEee---cCceEEEEeCCCCEE
Q 014040 95 IRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI---GNFFTAVLSREGRVY 171 (432)
Q Consensus 95 ~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~---G~~~~~~lt~~G~vy 171 (432)
..|..++......+.-..+|.|..|-.. + +..........|..++. .....+....+|.|+
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~~---~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~ 168 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKEG---S-------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIK 168 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETT---E-------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcCC---c-------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEE
Confidence 4677887777777888889999999511 0 01111112234555544 455666678889999
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
.|-. ..+...........|..++...+..++ +-..+| .|+.|-.... ..+
T Consensus 169 i~d~--------------~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~dg-~i~i~d~~~~--------------~~~ 218 (313)
T 3odt_A 169 LWQN--------------DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDG-LIKLVDMHTG--------------DVL 218 (313)
T ss_dssp EEET--------------TEEEEEECSSCSSCEEEEEEEETTEEE-EEETTS-EEEEEETTTC--------------CEE
T ss_pred EEec--------------CceEEEEeccCcccEEEEEEcCCCeEE-EccCCC-eEEEEECCch--------------hhh
Confidence 8830 011111111233456666665444433 333477 9999853221 122
Q ss_pred ehhhccCCccEEEEcCCc-eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCC-cEEEEecC
Q 014040 252 EQFQLLNLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSED 329 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~G~~-h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~s~~lt~~ 329 (432)
..+......|..++...+ ..++-..+|.|+.|-.... .+..........|..++...+ ..++-..+
T Consensus 219 ~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 219 RTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLKQVITLPAISIWSVDCMSNGDIIVGSSD 286 (313)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEEEEEECSSSCEEEEEECTTSCEEEEETT
T ss_pred hhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------ceeEEEeccCceEEEEEEccCCCEEEEeCC
Confidence 222223345666655443 4556678899999954221 111111122335666665433 34556778
Q ss_pred CCEEEEeCC
Q 014040 330 GDVYSFGCG 338 (432)
Q Consensus 330 g~vy~~G~n 338 (432)
|.|+.|-..
T Consensus 287 g~i~iw~~~ 295 (313)
T 3odt_A 287 NLVRIFSQE 295 (313)
T ss_dssp SCEEEEESC
T ss_pred CcEEEEeCC
Confidence 999999644
No 24
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=94.73 E-value=2.7 Score=39.21 Aligned_cols=200 Identities=14% Similarity=0.079 Sum_probs=91.0
Q ss_pred ceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcC
Q 014040 159 FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLG 238 (432)
Q Consensus 159 ~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg 238 (432)
...++...+|.|+.|-.... .+..... .....|..++...+...+++...+| .|+.|-....
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~------------~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~---- 279 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEK------------TPTGKLI-GHHGPISVLEFNDTNKLLLSASDDG-TLRIWHGGNG---- 279 (425)
T ss_dssp TEEEEECGGGCEEEEETTCS------------SCSEEEC-CCSSCEEEEEEETTTTEEEEEETTS-CEEEECSSSB----
T ss_pred CEEEEEcCCCeEEEEEcCCC------------ceeeeec-cCCCceEEEEECCCCCEEEEEcCCC-EEEEEECCCC----
Confidence 34555677889988853321 0111111 2233466666654444444444477 8888843211
Q ss_pred CCCCCCCCCceeeehhhccCCccEEEEcCCc-eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEe
Q 014040 239 HGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA 317 (432)
Q Consensus 239 ~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~-h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~ 317 (432)
..+..+......|..+....+ ..++...+|.|+.|-.... .+..........|..++
T Consensus 280 ----------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~------------~~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 280 ----------NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN------------TLLALSIVDGVPIFAGR 337 (425)
T ss_dssp ----------SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT------------EEEEEEECTTCCEEEEE
T ss_pred ----------ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC------------cEeEecccCCccEEEEE
Confidence 011111112334555544333 5556678889999864321 11111111223455555
Q ss_pred cC--CCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccc--eEEEEeeeccccccceEEEE
Q 014040 318 TG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNE--RVVQISLTNSIYWNAHTFAL 393 (432)
Q Consensus 318 ~G--~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~--~i~~i~~~~~~~G~~~~~~l 393 (432)
.. ....++-..+|.|+.|-........... ............+..+..+..... .|..++.... ....++.
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~ 412 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSL--YGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA---GNKISVA 412 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECHHHHC----------------CEECCEEEEECCTTCCCCEEEEEECTT---SSEEEEE
T ss_pred EcCCCCEEEEEECCCeEEEEECCCCccceeee--ecccccccCcccchhhhhhcCcccCCceEEEEccCC---CceEEEE
Confidence 44 3344445678889998753211000000 000000001111223444433322 6777776211 1234455
Q ss_pred eCCCCEEEec
Q 014040 394 TESGKLYAFG 403 (432)
Q Consensus 394 t~~G~v~~wG 403 (432)
..+|.|+.|-
T Consensus 413 ~~dg~i~iw~ 422 (425)
T 1r5m_A 413 YSLQEGSVVA 422 (425)
T ss_dssp ESSSCCEEEE
T ss_pred ecCceEEEEe
Confidence 7888888884
No 25
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=94.44 E-value=3.1 Score=38.62 Aligned_cols=209 Identities=11% Similarity=0.028 Sum_probs=102.0
Q ss_pred eecccceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC------C---CeEEEEe
Q 014040 41 CRRENSQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG------A---GRTMLIS 111 (432)
Q Consensus 41 ~~~~i~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g------~---~~~~~lt 111 (432)
....|..++.-....+.-..||.|+.|-...... .........+. .....|..++.. . ...+...
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~ 88 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS 88 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc
Confidence 3456777777666666667899999996543210 00000111111 122356666543 2 3455556
Q ss_pred cCCCEEEEeCCCCCCccCCCCCcccccCCeeecccC----CccEEEEeec------Cce-EEEEeCCCCEEEEEecC---
Q 014040 112 DAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK----NIFVVQAAIG------NFF-TAVLSREGRVYTFSWGN--- 177 (432)
Q Consensus 112 ~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~----~~~I~~v~~G------~~~-~~~lt~~G~vy~~G~n~--- 177 (432)
.||.|+.|-...... ........+.... ...|..++.. ... .+....+|.|+.|-...
T Consensus 89 ~dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 89 FSGDLLFYRITREDE--------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp TTSCEEEEEEEECTT--------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CCCCEEEEEccCCcc--------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 788888886432110 0000011122221 2457776665 334 45567889999886554
Q ss_pred ---CCcCCCCCCCCccccc-cccc-----ccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCc
Q 014040 178 ---DARLGHHTEPNDVEPH-PLLG-----TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHP 248 (432)
Q Consensus 178 ---~gqlg~~~~~~~~~p~-~i~~-----~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p 248 (432)
...+. ..|. .+.. ......|..++...+. .+++-..+| .|+.|-... .
T Consensus 161 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg-~i~i~d~~~--------------~ 217 (397)
T 1sq9_A 161 ESNSLTLN-------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNG-TVQISELST--------------L 217 (397)
T ss_dssp HHHHTTTC-------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTS-EEEEEETTT--------------T
T ss_pred ccccceee-------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCC-cEEEEECCC--------------C
Confidence 11111 1111 1100 1223446666666555 555544577 999985321 1
Q ss_pred eeeehhhc---c---CCccEEEEcC--CceEEEEeCC---CCEEEEecC
Q 014040 249 RLIEQFQL---L---NLQPVVVAAG--AWHAAVVGQD---GRVCTWGWG 286 (432)
Q Consensus 249 ~~~~~~~~---~---~~~i~~i~~G--~~h~~~lt~~---g~vy~wG~n 286 (432)
..+..+.. . ...|..++.. ..+.++-..+ |.|+.|-..
T Consensus 218 ~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 218 RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 12222221 2 3345555543 3344455666 788888653
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=93.81 E-value=4.4 Score=37.98 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=71.5
Q ss_pred eEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEE---cCCCeEEEEecCCCEEEEeCCC
Q 014040 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA---AGAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 47 ~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~---~g~~~~~~lt~~g~vy~~G~n~ 123 (432)
.++.-..+.+.-..+|.|+.|-.... .. ...+....+..+. ......+.-..+|.|..|-...
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~------------~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIR------------DG--SKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSE------------ET--TTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred eeeecCCeEEEEEcCCcEEEEEeccc------------ce--eeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 34444555566667788888853221 01 1111112333332 2334555566788888885321
Q ss_pred CCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCC
Q 014040 124 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLEN 201 (432)
Q Consensus 124 ~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~ 201 (432)
. .+..........|..++...+ ..+.-..||.|+.|-..... ....+. ...
T Consensus 129 ~--------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-----------~~~~~~--~h~ 181 (420)
T 3vl1_A 129 N--------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-----------NPRTLI--GHR 181 (420)
T ss_dssp C--------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------CCEEEE--CCS
T ss_pred c--------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-----------CceEEc--CCC
Confidence 1 011111122345777766533 45556678999988433211 011111 223
Q ss_pred CCEEEEEecccceeEEEeeCCCCEEEEEcc
Q 014040 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGC 231 (432)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~ 231 (432)
..|..++...+...+++-..+| .|..|-.
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~ 210 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDG-TIRLWEC 210 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-CEEEEET
T ss_pred CcEEEEEEcCCCCEEEEEcCCC-cEEEeEC
Confidence 3477777665555455544577 8888843
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.51 E-value=8.3 Score=42.28 Aligned_cols=185 Identities=12% Similarity=-0.021 Sum_probs=82.7
Q ss_pred CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc-eEEEEeCCCCEEEEEecCCCcCC
Q 014040 104 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF-FTAVLSREGRVYTFSWGNDARLG 182 (432)
Q Consensus 104 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~-~~~~lt~~G~vy~~G~n~~gqlg 182 (432)
....+.-..||.|..|-...... . ... .....|..++...+ ..+....+|.|+.|-......
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~----------~----~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~-- 1077 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDY----------V----FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI-- 1077 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEE----------E----CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC--
T ss_pred CCEEEEEcCCCEEEEEECCCCce----------E----EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce--
Confidence 33455556788888886432110 0 011 11234565555443 445567788999884322100
Q ss_pred CCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccE
Q 014040 183 HHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPV 262 (432)
Q Consensus 183 ~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~ 262 (432)
...+. .....|..++...+...+++...+| .|+.|-..... .+..+......|.
T Consensus 1078 ---------~~~~~--~~~~~v~~~~~s~d~~~l~s~s~d~-~v~iwd~~~~~--------------~~~~l~~h~~~v~ 1131 (1249)
T 3sfz_A 1078 ---------ERDFT--CHQGTVLSCAISSDATKFSSTSADK-TAKIWSFDLLS--------------PLHELKGHNGCVR 1131 (1249)
T ss_dssp ---------CEEEE--CCSSCCCCEEECSSSSSCEEECCSS-CCCEECSSSSS--------------CSBCCCCCSSCEE
T ss_pred ---------eEEEc--ccCCcEEEEEECCCCCEEEEEcCCC-cEEEEECCCcc--------------eeeeeccCCCcEE
Confidence 00111 1122344444443333333333367 78777432111 1111112223444
Q ss_pred EEEcCCc--eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEe---cccCCCcEEEEecCCCcEEEEecCCCEEEEeC
Q 014040 263 VVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV---QALNDVKAIHVATGDYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 263 ~i~~G~~--h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i---~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~ 337 (432)
.++...+ ..+.-..||.|+.|-......+.. ..|... .......|..++...+...+++.+|.|..|-.
T Consensus 1132 ~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~ 1205 (1249)
T 3sfz_A 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS------CAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNV 1205 (1249)
T ss_dssp EEEECSSSSEEEEEETTSCCCEEESSSSCCCCC------CCCCC-------CCSCCCEEEECTTSSCEEEESSSEEEBCS
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------eccccccccccccCceEEEEEECCCCCEEEECCCeEEEEEC
Confidence 5544333 444456788888886543221111 111100 01112235555555554455555688888854
No 28
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.28 E-value=6.5 Score=40.47 Aligned_cols=20 Identities=5% Similarity=-0.124 Sum_probs=15.7
Q ss_pred CCCcEEEEecCCCEEEEeCC
Q 014040 319 GDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 319 G~~~s~~lt~~g~vy~~G~n 338 (432)
...|++++..+++||++|-.
T Consensus 597 R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CBSCEEEEEETTEEEEECCB
T ss_pred cccceEEEeCCCEEEEECCc
Confidence 35778888777999999953
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.02 E-value=5.1 Score=36.39 Aligned_cols=158 Identities=9% Similarity=-0.049 Sum_probs=82.0
Q ss_pred CcEEEEEcC------CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc------eEE
Q 014040 95 IRIIQAAAG------AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF------FTA 162 (432)
Q Consensus 95 ~~i~~v~~g------~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~------~~~ 162 (432)
..|..|+.. ....++-..++.|..|-......+. .............|..++.... ..+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~ 89 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR---------LLQSYVDADADENFYTCAWTYDSNTSHPLLA 89 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE---------EEEEEECSCTTCCEEEEEEEECTTTCCEEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE---------eeeeccccCCCCcEEEEEeccCCCCCCCEEE
Confidence 367777665 4557777778888888654321110 0000000112334666666544 455
Q ss_pred EEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCCC
Q 014040 163 VLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGS 241 (432)
Q Consensus 163 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~ 241 (432)
.-..+|.|..|-.... .+.... ......|..++... +..++++-..+| .|+.|-....
T Consensus 90 ~~~~dg~i~v~d~~~~------------~~~~~~-~~~~~~i~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~------- 148 (366)
T 3k26_A 90 VAGSRGIIRIINPITM------------QCIKHY-VGHGNAINELKFHPRDPNLLLSVSKDH-ALRLWNIQTD------- 148 (366)
T ss_dssp EEETTCEEEEECTTTC------------CEEEEE-ESCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTTT-------
T ss_pred EecCCCEEEEEEchhc------------eEeeee-cCCCCcEEEEEECCCCCCEEEEEeCCC-eEEEEEeecC-------
Confidence 5678899998832210 011111 12344588877765 444444444478 9999843211
Q ss_pred CCCCCCceeeehhhccCCccEEEEcC--CceEEEEeCCCCEEEEecC
Q 014040 242 RTDEKHPRLIEQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 286 (432)
Q Consensus 242 ~~~~~~p~~~~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n 286 (432)
.....+..+......|..++.. ..+.+.-..+|.|+.|-..
T Consensus 149 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 149 ----TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp ----EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC
T ss_pred ----eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECC
Confidence 0111111112334456666654 3455566789999999754
No 30
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.01 E-value=5.1 Score=36.38 Aligned_cols=193 Identities=10% Similarity=0.004 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCC-----eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeC
Q 014040 94 GIRIIQAAAGAG-----RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSR 166 (432)
Q Consensus 94 ~~~i~~v~~g~~-----~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~ 166 (432)
...|..|+.... ..+.-..||.|..|-....++. ....+. .....|..++...+ ..+....
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------EEEEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------eEEEec-cccCCEEEEEECcCCCEEEEEcC
Confidence 447888877654 3444566899999965432210 001111 12334777666533 4555677
Q ss_pred CCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEe--cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC
Q 014040 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (432)
Q Consensus 167 ~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (432)
+|.|..|-.... ....+ ......|..++. ..+...+++...+| .|+.|-....
T Consensus 107 dg~v~iwd~~~~------------~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~---------- 161 (368)
T 3mmy_A 107 DKTAKMWDLSSN------------QAIQI--AQHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSS---------- 161 (368)
T ss_dssp TSEEEEEETTTT------------EEEEE--EECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCS----------
T ss_pred CCcEEEEEcCCC------------Cceee--ccccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCC----------
Confidence 899998843321 01111 123345777775 54544444444578 9999943211
Q ss_pred CCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEeccc--CCCcEEEEecCCCc
Q 014040 245 EKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGDYT 322 (432)
Q Consensus 245 ~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~G~~~ 322 (432)
.+ +..+. ....+..+..-....++.+.++.++.|-...... ....+... ....+..+......
T Consensus 162 --~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 162 --NP--MMVLQ-LPERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp --SC--SEEEE-CSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTS
T ss_pred --cE--EEEEe-cCCCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCC
Confidence 01 11111 1124455555566777888899999987543211 01111111 11123333333333
Q ss_pred ----EEEEecCCCEEEEeCC
Q 014040 323 ----TFVVSEDGDVYSFGCG 338 (432)
Q Consensus 323 ----s~~lt~~g~vy~~G~n 338 (432)
.++-..+|.|..|-..
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYIN 246 (368)
T ss_dssp CEEEEEEEETTSEEEEEESS
T ss_pred CCCeEEEecCCCcEEEEecC
Confidence 5556778989888654
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=92.79 E-value=6 Score=36.59 Aligned_cols=111 Identities=15% Similarity=0.017 Sum_probs=54.7
Q ss_pred cEEEEeecCc-eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEE
Q 014040 150 FVVQAAIGNF-FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYS 228 (432)
Q Consensus 150 ~I~~v~~G~~-~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~ 228 (432)
.|..++...+ ..++-..+|.|..|-...... .........-....|..++...+...+++-..+| .|..
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~---------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-~v~i 165 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKES---------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-SVKV 165 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC-----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-CEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccce---------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-eEEE
Confidence 3666665433 444556778888773221100 0000111101223577777766555555544577 8888
Q ss_pred EccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC---ceEEEEeCCCCEEEEe
Q 014040 229 VGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWG 284 (432)
Q Consensus 229 ~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~g~vy~wG 284 (432)
|-... ...+..+......|..++... ...+.-..||.|..|=
T Consensus 166 wd~~~--------------~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd 210 (357)
T 4g56_B 166 WDLSQ--------------KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210 (357)
T ss_dssp EETTT--------------TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECC
T ss_pred EECCC--------------CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEE
Confidence 84221 222333333334566665432 2345557789999884
No 32
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.66 E-value=9.8 Score=38.69 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=39.5
Q ss_pred CceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEe----cCCCcEEE-EecCCCEEEEeCCCCCC
Q 014040 268 AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVA----TGDYTTFV-VSEDGDVYSFGCGESAS 342 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~----~G~~~s~~-lt~~g~vy~~G~n~~gq 342 (432)
..|+.++..+|+||+.|-...++. .+.......+....... .+...+. .-..|+++ +..+|+||+.|.+.++.
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t-~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQ-DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGG-TEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCC-CceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 458878888999999996443321 11111222222222111 1222221 23467654 56799999999876553
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.52 E-value=5.6 Score=35.60 Aligned_cols=183 Identities=8% Similarity=-0.070 Sum_probs=89.2
Q ss_pred cEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC--ceEEEEeCCCCEE
Q 014040 96 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~--~~~~~lt~~G~vy 171 (432)
.|..++.. ....+.-..+|.|+.|-...... ...+. .....|..++... ...+....+|.|+
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-------------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-------------VRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-------------EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-------------eeeee-cccCceEEEEECCCCCEEEEEecCCcEE
Confidence 46666543 34556666788898886432100 01111 1233466666643 3455566889999
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
.|-.... .+.... .....+..++...+...+++-..+| .|+.|-..... ...+
T Consensus 209 ~~d~~~~------------~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~-~i~~~~~~~~~------------~~~~ 261 (337)
T 1gxr_A 209 SWDLREG------------RQLQQH--DFTSQIFSLGYCPTGEWLAVGMESS-NVEVLHVNKPD------------KYQL 261 (337)
T ss_dssp EEETTTT------------EEEEEE--ECSSCEEEEEECTTSSEEEEEETTS-CEEEEETTSSC------------EEEE
T ss_pred EEECCCC------------ceEeee--cCCCceEEEEECCCCCEEEEEcCCC-cEEEEECCCCC------------eEEE
Confidence 8843221 011110 1223466666554443333333467 88887432211 1111
Q ss_pred ehhhccCCccEEEEcC--CceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecC--CCcEEEEe
Q 014040 252 EQFQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVS 327 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~s~~lt 327 (432)
......|..++.. ..+.+....+|.|+.|-......+ ... .....|..++.. ..+.++-.
T Consensus 262 ---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~-----------~~~--~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 262 ---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI-----------FQS--KESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-----------EEE--ECSSCEEEEEECTTSCEEEEEE
T ss_pred ---cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE-----------EEe--cCCCcEEEEEECCCCCEEEEec
Confidence 1123345555544 345556677888999865332111 111 122245544443 23344446
Q ss_pred cCCCEEEE
Q 014040 328 EDGDVYSF 335 (432)
Q Consensus 328 ~~g~vy~~ 335 (432)
.+|.|+.|
T Consensus 326 ~dg~i~iw 333 (337)
T 1gxr_A 326 GDKKATVY 333 (337)
T ss_dssp TTSCEEEE
T ss_pred CCCeEEEE
Confidence 67777777
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=92.21 E-value=7.1 Score=36.09 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=76.5
Q ss_pred CcEEEEEcC------CCe-EEEEecCCCEEEEeCCCCCCccCCCCCcccccCCe-eec------ccCCccEEEEeecCc-
Q 014040 95 IRIIQAAAG------AGR-TMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQ-LVE------SLKNIFVVQAAIGNF- 159 (432)
Q Consensus 95 ~~i~~v~~g------~~~-~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~-~v~------~~~~~~I~~v~~G~~- 159 (432)
..|..++.. ... .+....+|.|+.|-....-.-... ......|. .+. ......|..++...+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 198 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS---LTLNWSPTLELQGTVESPMTPSQFATSVDISERG 198 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH---TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccc---ceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence 356666554 444 556678899999965431000000 00011111 111 112334566655544
Q ss_pred eEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc---C---CCCEEEEEecccceeEEEeeCC---CCEEEEEc
Q 014040 160 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL---E---NIPVVQIAAGYCYLLALACQPS---GMAVYSVG 230 (432)
Q Consensus 160 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~---~---~~~i~~i~~g~~~~~~l~~~~~---G~~vy~~G 230 (432)
..+.-..+|.|+.|-.... .+..... . . ...|..++...+..++++-..+ | .|+.|-
T Consensus 199 ~l~~~~~dg~i~i~d~~~~------------~~~~~~~-~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g-~i~i~d 264 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTL------------RPLYNFE-SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFG-CITLYE 264 (397)
T ss_dssp EEEEECTTSEEEEEETTTT------------EEEEEEE-CCC---CCCCCEEEEEECSSTTEEEEEEEETTEE-EEEEEE
T ss_pred eEEEEeCCCcEEEEECCCC------------ceeEEEe-ccccccccCCccceEEECCCCCEEEEEecCCCCc-eEEEEE
Confidence 4444567888888843221 1111111 1 1 4457777765444434333336 7 899885
Q ss_pred cCCCCCcCCCCCCCCCCceeeehhhc-------------cCCccEEEEcC--CceEEEEeCCCCEEEEecC
Q 014040 231 CGLGGKLGHGSRTDEKHPRLIEQFQL-------------LNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 286 (432)
Q Consensus 231 ~n~~gqlg~~~~~~~~~p~~~~~~~~-------------~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n 286 (432)
..... .+..+.. ....|..++.. ....+.-..+|.|+.|-..
T Consensus 265 ~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 265 TEFGE--------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp TTTCC--------------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred CCCCc--------------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 43211 1111111 23345555544 3455556778889998653
No 35
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=92.12 E-value=6 Score=35.01 Aligned_cols=271 Identities=9% Similarity=-0.021 Sum_probs=132.3
Q ss_pred cccceEec-CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEc--CCCeEEEEecCCCEEEE
Q 014040 43 RENSQAIA-GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA--GAGRTMLISDAGQVYAF 119 (432)
Q Consensus 43 ~~i~~i~~-G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~~~~~lt~~g~vy~~ 119 (432)
..|..++. -....+.-..||.|..|-.... .....+.. ....|..++. .....+.-..||.|..|
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 34555543 2233455567888999853211 11111111 1224544433 34455666677877777
Q ss_pred eCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014040 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (432)
Q Consensus 120 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 199 (432)
--..... ..+..........|..++......+.-..+|.|..|- ...+..... .
T Consensus 87 ~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--------------~~~~~~~~~-~ 140 (313)
T 3odt_A 87 PLFATSG-----------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--------------EGSLVYNLQ-A 140 (313)
T ss_dssp ETTCCTT-----------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--------------TTEEEEEEE-C
T ss_pred EeeecCC-----------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--------------CCcEEEecc-c
Confidence 5432110 0111111122345788888777777788999999883 001111111 2
Q ss_pred CCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhc-cCCccEEEEcCCc-eEEEEeC
Q 014040 200 ENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQL-LNLQPVVVAAGAW-HAAVVGQ 276 (432)
Q Consensus 200 ~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~-~~~~i~~i~~G~~-h~~~lt~ 276 (432)
....+..+.... +...+++-..+| .|+.|-.. ..+..+.. ....+..++.... ..++-..
T Consensus 141 ~~~~v~~~~~~~~~~~~l~~~~~d~-~i~i~d~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (313)
T 3odt_A 141 HNASVWDAKVVSFSENKFLTASADK-TIKLWQND----------------KVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203 (313)
T ss_dssp CSSCEEEEEEEETTTTEEEEEETTS-CEEEEETT----------------EEEEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred CCCceeEEEEccCCCCEEEEEECCC-CEEEEecC----------------ceEEEEeccCcccEEEEEEcCCCeEEEccC
Confidence 233465555432 222233333477 88888310 11111111 2223444433222 2555678
Q ss_pred CCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCC-cEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCc
Q 014040 277 DGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSEDGDVYSFGCGESASLGHNAIADGQGNR 355 (432)
Q Consensus 277 ~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~ 355 (432)
+|.|+.|-..... ....+. .....|..++...+ ..++-..+|.|+.|-...
T Consensus 204 dg~i~i~d~~~~~-----------~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~---------------- 255 (313)
T 3odt_A 204 DGLIKLVDMHTGD-----------VLRTYE-GHESFVYCIKLLPNGDIVSCGEDRTVRIWSKEN---------------- 255 (313)
T ss_dssp TSEEEEEETTTCC-----------EEEEEE-CCSSCEEEEEECTTSCEEEEETTSEEEEECTTT----------------
T ss_pred CCeEEEEECCchh-----------hhhhhh-cCCceEEEEEEecCCCEEEEecCCEEEEEECCC----------------
Confidence 8899999653211 011111 12234555655433 444556788888885321
Q ss_pred ccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCC
Q 014040 356 HANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 406 (432)
Q Consensus 356 ~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~ 406 (432)
...+..+......|..++.... | ..++-..+|.|+.|=...
T Consensus 256 ------~~~~~~~~~~~~~i~~~~~~~~--~--~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 256 ------GSLKQVITLPAISIWSVDCMSN--G--DIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ------CCEEEEEECSSSCEEEEEECTT--S--CEEEEETTSCEEEEESCG
T ss_pred ------CceeEEEeccCceEEEEEEccC--C--CEEEEeCCCcEEEEeCCC
Confidence 0122222223346777776322 2 356678999999997654
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.03 E-value=8.6 Score=36.62 Aligned_cols=202 Identities=7% Similarity=-0.070 Sum_probs=105.5
Q ss_pred cEEEEEcC----CCeEEEEecCCCEEEEeCCCCCCccCCCC---Cc----ccccCCeeec--ccCCccEEEEeecCceEE
Q 014040 96 RIIQAAAG----AGRTMLISDAGQVYAFGKDSFGEAEYGVQ---GT----KLVTSPQLVE--SLKNIFVVQAAIGNFFTA 162 (432)
Q Consensus 96 ~i~~v~~g----~~~~~~lt~~g~vy~~G~n~~gqlg~~~~---~~----~~~~~p~~v~--~~~~~~I~~v~~G~~~~~ 162 (432)
.|..++.. ....+.-..||.|..|-............ .. .....|..+. .-....|..++......+
T Consensus 205 ~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 284 (464)
T 3v7d_B 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 284 (464)
T ss_dssp CEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEE
T ss_pred ccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEE
Confidence 45555432 24566677889999997654332211100 00 0001111111 112335777777777778
Q ss_pred EEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCC
Q 014040 163 VLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSR 242 (432)
Q Consensus 163 ~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~ 242 (432)
.-..+|.|..|-.... .+..... .....|..++...+...+++-..+| .|+.|-...
T Consensus 285 ~~~~d~~i~vwd~~~~------------~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~--------- 341 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQM------------KCLYILS-GHTDRIYSTIYDHERKRCISASMDT-TIRIWDLEN--------- 341 (464)
T ss_dssp EEETTSCEEEEETTTT------------EEEEEEC-CCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTT---------
T ss_pred EEeCCCeEEEEECCCC------------cEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCC---------
Confidence 8888999998843211 1111111 2234577777665544444444577 888884321
Q ss_pred CCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCc
Q 014040 243 TDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYT 322 (432)
Q Consensus 243 ~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~ 322 (432)
...+..+......|..++....+.+.-..||.|..|-.....+ ...........+..+.....
T Consensus 342 -----~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~- 404 (464)
T 3v7d_B 342 -----GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSR-----------KFSYHHTNLSAITTFYVSDN- 404 (464)
T ss_dssp -----TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-----------EEEEECTTCCCEEEEEECSS-
T ss_pred -----CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCce-----------eeeecCCCCccEEEEEeCCC-
Confidence 1223333334456777777777888889999999997543211 11111112223444444433
Q ss_pred EEEEecCCCEEEEeC
Q 014040 323 TFVVSEDGDVYSFGC 337 (432)
Q Consensus 323 s~~lt~~g~vy~~G~ 337 (432)
.++...+|.|..|=.
T Consensus 405 ~l~~~~dg~i~iwd~ 419 (464)
T 3v7d_B 405 ILVSGSENQFNIYNL 419 (464)
T ss_dssp EEEEEETTEEEEEET
T ss_pred EEEEecCCeEEEEEC
Confidence 344444788888853
No 37
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=91.24 E-value=8.3 Score=34.91 Aligned_cols=202 Identities=7% Similarity=-0.057 Sum_probs=92.7
Q ss_pred cccceEecCC--CeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC--CCeEEEEecCCCEEE
Q 014040 43 RENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYA 118 (432)
Q Consensus 43 ~~i~~i~~G~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~ 118 (432)
..|..++... ...+.-..+|.|+.|-.... .....+. .....|..++.. ....+....||.|+.
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3555555433 33444456788888843221 0111111 122356666654 445666678899999
Q ss_pred EeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC--ceEEEEeCC-----CCEEEEEecCCCcCCCCCCCCccc
Q 014040 119 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSRE-----GRVYTFSWGNDARLGHHTEPNDVE 191 (432)
Q Consensus 119 ~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~--~~~~~lt~~-----G~vy~~G~n~~gqlg~~~~~~~~~ 191 (432)
|-......+ ..+. ....|..++... ...++...+ |.|+.|-.................
T Consensus 101 wd~~~~~~~-------------~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 101 WDVSNGQCV-------------ATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EETTTCCEE-------------EEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EECCCCcEE-------------EEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 964321100 0111 123355554443 344444555 888888654432211110000000
Q ss_pred ccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcC--Cc
Q 014040 192 PHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--AW 269 (432)
Q Consensus 192 p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~~ 269 (432)
...+........+..++...+...+++-..+| .|+.|-.... ...+..+......|..++.. ..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~ 231 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWSTKGKYIIAGHKDG-KISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLT 231 (369)
T ss_dssp SEEEECCTTCCCEEEEEECGGGCEEEEEETTS-EEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSS
T ss_pred eeeccCCcCccceeEEEEcCCCCEEEEEcCCC-EEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCC
Confidence 01111111112466666555444444444477 9998843221 11222222233345555543 33
Q ss_pred eEEEEeCCCCEEEEec
Q 014040 270 HAAVVGQDGRVCTWGW 285 (432)
Q Consensus 270 h~~~lt~~g~vy~wG~ 285 (432)
..++-..+|.|+.|-.
T Consensus 232 ~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 232 YFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEEETTSEEEEEET
T ss_pred EEEEecCCceEEEEEC
Confidence 4555567888888854
No 38
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=90.97 E-value=10 Score=35.44 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=78.3
Q ss_pred EEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC--ceEEEEeCCCCEEEEE
Q 014040 97 IIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVYTFS 174 (432)
Q Consensus 97 i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~--~~~~~lt~~G~vy~~G 174 (432)
+..++-.....++...+|.|+.|-..... ............|..|+... .+.++-..+|.|..|-
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~-------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS-------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC-------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc-------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 33455556778888899999999754311 01111111234566666543 3455566789999884
Q ss_pred ecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehh
Q 014040 175 WGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF 254 (432)
Q Consensus 175 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~ 254 (432)
..... ....+. .....|..++......+... .+| .|+.|-..... ..+..+
T Consensus 163 ~~~~~-----------~~~~~~--~~~~~v~~~~~~~~~l~~~~--~dg-~i~i~d~~~~~-------------~~~~~~ 213 (401)
T 4aez_A 163 VESQT-----------KLRTMA--GHQARVGCLSWNRHVLSSGS--RSG-AIHHHDVRIAN-------------HQIGTL 213 (401)
T ss_dssp TTTCC-----------EEEEEC--CCSSCEEEEEEETTEEEEEE--TTS-EEEEEETTSSS-------------CEEEEE
T ss_pred CcCCe-----------EEEEec--CCCCceEEEEECCCEEEEEc--CCC-CEEEEecccCc-------------ceeeEE
Confidence 32210 001111 22345777777444333333 377 99999532111 111122
Q ss_pred hccCCccEEEEcC--CceEEEEeCCCCEEEEecC
Q 014040 255 QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWG 286 (432)
Q Consensus 255 ~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n 286 (432)
......|..++.. ..+.+.-..||.|+.|-..
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 2233345555543 3355556778999999653
No 39
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.94 E-value=11 Score=38.64 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=11.6
Q ss_pred ceEEEEeCCCCEEEEec
Q 014040 269 WHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 269 ~h~~~lt~~g~vy~wG~ 285 (432)
.|+.+...+|+||++|-
T Consensus 657 gh~~~~~~~g~i~v~GG 673 (695)
T 2zwa_A 657 GFSLVSTSMGTIHIIGG 673 (695)
T ss_dssp SCEEECC---CEEEECC
T ss_pred eeeEEEeCCCEEEEEeC
Confidence 48888888889999985
No 40
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=89.31 E-value=13 Score=34.17 Aligned_cols=311 Identities=11% Similarity=0.009 Sum_probs=142.7
Q ss_pred eecccceEecCC---CeEEEEecCCcEEEEeCCCCCCcCCCCCCCc-ccccccCcCCCCcEEEEEc---CCCeEEEEecC
Q 014040 41 CRRENSQAIAGP---GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEE-WRPRPIRSLQGIRIIQAAA---GAGRTMLISDA 113 (432)
Q Consensus 41 ~~~~i~~i~~G~---~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~-~~p~~i~~~~~~~i~~v~~---g~~~~~~lt~~ 113 (432)
....|..++.-. ...+.-..||.|..|-.........-..... ..+..........|..++. +....+.-..|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 345676666643 4455556789999996543221110000000 0000000112336777765 33456666779
Q ss_pred CCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC-----ceEEEEeCCCCEEEEEecCCCcCCCCCCCC
Q 014040 114 GQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREGRVYTFSWGNDARLGHHTEPN 188 (432)
Q Consensus 114 g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~-----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~ 188 (432)
|.|..|-...... ...+. ....+..+.... ...++-..+|.|+.|-......
T Consensus 122 ~~i~iwd~~~~~~-------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-------- 178 (408)
T 4a11_B 122 KTLKVWDTNTLQT-------------ADVFN--FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-------- 178 (408)
T ss_dssp SEEEEEETTTTEE-------------EEEEE--CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC--------
T ss_pred CeEEEeeCCCCcc-------------ceecc--CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce--------
Confidence 9999996442110 00111 112244443332 1455567889999885432110
Q ss_pred cccccccccccCCCCEEEEEecccce-eEEEeeCCCCEEEEEccCCCCC-cCCCCC-CCCCCceeeehhhccCCccEEEE
Q 014040 189 DVEPHPLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGK-LGHGSR-TDEKHPRLIEQFQLLNLQPVVVA 265 (432)
Q Consensus 189 ~~~p~~i~~~~~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gq-lg~~~~-~~~~~p~~~~~~~~~~~~i~~i~ 265 (432)
...+. .....|..++...+.. ++++-..+| .|+.|-...... +-.-.. ..................|..++
T Consensus 179 ---~~~~~--~~~~~v~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 179 ---SHILQ--GHRQEILAVSWSPRYDYILATASADS-RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp ---CEEEC--CCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred ---eeeec--CCCCcEEEEEECCCCCcEEEEEcCCC-cEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 00111 2233577777665443 333334477 899886432210 000000 00000000111112233455555
Q ss_pred cCC--ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCCCCCCC
Q 014040 266 AGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCGESASL 343 (432)
Q Consensus 266 ~G~--~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n~~gql 343 (432)
... .+.+....+|.|+.|-......+-.-. ............+..........++...++.|+.|-...
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---- 323 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY-----GKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYS---- 323 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCBCCCCC-----CCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTT----
T ss_pred EcCCCCEEEEecCCCeEEEEECCCCccceecc-----ccccccccccceeEEecCCCceEEEEecCCEEEEEECcC----
Confidence 543 356666789999999765422211100 000001111222232333345556667788999986432
Q ss_pred CCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCCCCccc
Q 014040 344 GHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQL 410 (432)
Q Consensus 344 g~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~~gqL 410 (432)
...+..+..-...|..++.... ....+.-..||.|..|=....-.+
T Consensus 324 ------------------~~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 324 ------------------GEQITMLKGHYKTVDCCVFQSN---FQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp ------------------CCEEEEECCCSSCEEEEEEETT---TTEEEEEETTSCEEEEEECC----
T ss_pred ------------------CcceeeeccCCCeEEEEEEcCC---CCEEEEECCCCeEEEEeCCCCCcc
Confidence 1122223223356777766211 234445568999999977665444
No 41
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=89.00 E-value=16 Score=34.62 Aligned_cols=268 Identities=8% Similarity=-0.003 Sum_probs=121.5
Q ss_pred cEEEEEcCCC---eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc---eEEEEeCCCC
Q 014040 96 RIIQAAAGAG---RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF---FTAVLSREGR 169 (432)
Q Consensus 96 ~i~~v~~g~~---~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~---~~~~lt~~G~ 169 (432)
.|..++.... ..+.-..+|.|+.|-......... ......|..........|..++.... ..+.-..+|.
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE----PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC----TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC----ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 3444544332 344445688899887653211000 00001111111111223444444322 5555667899
Q ss_pred EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCc
Q 014040 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHP 248 (432)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p 248 (432)
|..|-.+...... ....+..... .....|..++... ...++++...+| .|+.|-...... ..+
T Consensus 206 i~vwd~~~~~~~~-----~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg-~i~i~d~~~~~~---------~~~ 269 (430)
T 2xyi_A 206 ICLWDINATPKEH-----RVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNT---------SKP 269 (430)
T ss_dssp EEEEETTSCCBGG-----GEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCSCS---------SSC
T ss_pred EEEEeCCCCCCCC-----ceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCC-eEEEEECCCCCC---------Ccc
Confidence 9988654421100 0001111111 2233577777654 333333333478 999995432210 011
Q ss_pred eeeehhhccCCccEEEEcCCc--e-EEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCc---
Q 014040 249 RLIEQFQLLNLQPVVVAAGAW--H-AAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYT--- 322 (432)
Q Consensus 249 ~~~~~~~~~~~~i~~i~~G~~--h-~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~--- 322 (432)
+..+......|..++.... + .+.-..+|.|..|-....++ ....+. .....|..|+.....
T Consensus 270 --~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~~-~h~~~v~~i~~sp~~~~~ 336 (430)
T 2xyi_A 270 --SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSFE-SHKDEIFQVQWSPHNETI 336 (430)
T ss_dssp --SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEEE-CCSSCEEEEEECSSCTTE
T ss_pred --eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEee-cCCCCEEEEEECCCCCCE
Confidence 1111122334555554332 3 33446788888887543211 111111 122356666554322
Q ss_pred EEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEe
Q 014040 323 TFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAF 402 (432)
Q Consensus 323 s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~w 402 (432)
.+.-..+|.|.+|-....+..-... ......|..+.....-...|..++.... +....+....+|.|..|
T Consensus 337 l~s~~~d~~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 337 LASSGTDRRLHVWDLSKIGEEQSTE--------DAEDGPPELLFIHGGHTAKISDFSWNPN--EPWIICSVSEDNIMQVW 406 (430)
T ss_dssp EEEEETTSCCEEEEGGGTTCCCCHH--------HHHHCCTTEEEECCCCSSCEEEEEECSS--STTEEEEEETTSEEEEE
T ss_pred EEEEeCCCcEEEEeCCCCccccCcc--------ccccCCcceEEEcCCCCCCceEEEECCC--CCCEEEEEECCCCEEEe
Confidence 3334568889998754322111000 1111223444444333456777776322 32345556788999999
Q ss_pred cCCC
Q 014040 403 GAGD 406 (432)
Q Consensus 403 G~n~ 406 (432)
=.+.
T Consensus 407 ~~~~ 410 (430)
T 2xyi_A 407 QMAE 410 (430)
T ss_dssp EECH
T ss_pred Eccc
Confidence 6553
No 42
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=88.94 E-value=19 Score=35.45 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=95.4
Q ss_pred cEEEEEcCCC---eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCc---cEEEEeecCc---eEEEEeC
Q 014040 96 RIIQAAAGAG---RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNI---FVVQAAIGNF---FTAVLSR 166 (432)
Q Consensus 96 ~i~~v~~g~~---~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~---~I~~v~~G~~---~~~~lt~ 166 (432)
.|..++.... ..+.-..||.|..|-...... ...+.. ... .|..++...+ ..+....
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~-------------~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~ 227 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-------------SASDRT-HHKQGSFVRDVEFSPDSGEFVITVGS 227 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE-------------EEEECS-SSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcce-------------eeeecc-cCCCCceEEEEEECCCCCCEEEEEeC
Confidence 5666655433 455566778888885322100 001111 122 4777776644 4455678
Q ss_pred CCCEEEEEecCCCcCCCCCCCCcccccccccc---cCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCC
Q 014040 167 EGRVYTFSWGNDARLGHHTEPNDVEPHPLLGT---LENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRT 243 (432)
Q Consensus 167 ~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~---~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~ 243 (432)
+|.|+.|-..... +...... .....|..++.. +...+++...+| .|..|-....
T Consensus 228 dg~i~vwd~~~~~------------~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~--------- 284 (615)
T 1pgu_A 228 DRKISCFDGKSGE------------FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA-TIRVWDVTTS--------- 284 (615)
T ss_dssp TCCEEEEETTTCC------------EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS-EEEEEETTTT---------
T ss_pred CCeEEEEECCCCC------------EeEEecccccccCCceEEEEEc-CCCEEEEEcCCC-cEEEEECCCC---------
Confidence 8999988432210 0010000 223357777765 444444444577 9999853211
Q ss_pred CCCCceeeehhhcc----CCccEEEEc-CCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEec
Q 014040 244 DEKHPRLIEQFQLL----NLQPVVVAA-GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT 318 (432)
Q Consensus 244 ~~~~p~~~~~~~~~----~~~i~~i~~-G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~ 318 (432)
..+..+... ...+..+.. ...+.++-..+|.|+.|-... ..+..........|..++.
T Consensus 285 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~------------~~~~~~~~~~~~~v~~~~~ 347 (615)
T 1pgu_A 285 -----KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH------------DEVLKTISGHNKGITALTV 347 (615)
T ss_dssp -----EEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE------------EEEEEEECCCSSCEEEEET
T ss_pred -----cEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC------------CcEEEEEeCCCCCEEEEEe
Confidence 111111111 112222222 455667778899999996432 1111111123346777887
Q ss_pred CCCcEEEEecCCCEEEEeCC
Q 014040 319 GDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 319 G~~~s~~lt~~g~vy~~G~n 338 (432)
.. .+.-..+|.|..|-..
T Consensus 348 -~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 348 -NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp -TT-TEEEETTSCEEETTTT
T ss_pred -cC-cEEECCCCeEEEEEch
Confidence 65 5556778999988543
No 43
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=88.52 E-value=13 Score=33.20 Aligned_cols=207 Identities=14% Similarity=0.068 Sum_probs=112.4
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEc---CCCeEEEEecCCCEEEEeCCCCCCcc
Q 014040 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA---GAGRTMLISDAGQVYAFGKDSFGEAE 128 (432)
Q Consensus 52 ~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~---g~~~~~~lt~~g~vy~~G~n~~gqlg 128 (432)
..+.+++|++|++|.---.+. - . . ...-+ ...+.+|+.+.+ .....+++|++|.+.-.-..++-+-
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~l---p--~---~-~~~~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~- 103 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQA---L--Q---G-SKVSL-KSREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYK- 103 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHH---H--T---S-EECCC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTC-
T ss_pred CCEEEEEcCCCeEEEEEhhhC---c--c---C-ccccc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhh-
Confidence 345889999999998642211 0 0 0 00013 335678888876 2347889999999887765544210
Q ss_pred CCCCCcccccCCee-ecccCCccEEEEee--cCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEE
Q 014040 129 YGVQGTKLVTSPQL-VESLKNIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVV 205 (432)
Q Consensus 129 ~~~~~~~~~~~p~~-v~~~~~~~I~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~ 205 (432)
..... +..-++..++.+.. +.++.+++|++|++|.+-.......|....... .+.. ..+.+|+
T Consensus 104 ---------~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~----~i~L-~~~d~vv 169 (276)
T 3no0_A 104 ---------AQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ----GIKL-EKNDETS 169 (276)
T ss_dssp ---------STTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE----CCCC-CTTCCEE
T ss_pred ---------cCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE----EEcc-CCCCEEE
Confidence 00111 11112345555433 455689999999999887666544443322211 1111 3456677
Q ss_pred EEEecc--cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEE--EcCCceEEEEeCCCCEE
Q 014040 206 QIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV--AAGAWHAAVVGQDGRVC 281 (432)
Q Consensus 206 ~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i--~~G~~h~~~lt~~g~vy 281 (432)
.+.... ...+++|+ +| .+.-.--.++...+++.... ..+ ..+.+++.+ ..+....+++|++|++.
T Consensus 170 ~~~~~~~~~~ll~~T~--~G-~~kr~~~~e~~~~~R~gkGv-------~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 170 GLRIWNGEPYLLVITA--KG-RVKKISHEEIPKTNRGVKGT-------EVS-GTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp EEEEESSCSEEEEEET--TS-CEEEEEGGGSCCCCTTCCCE-------ECC-CSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EEEEeCCCCEEEEEeC--CC-cEEEeEHHHcccCCCCCcce-------EEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 665443 34555665 77 66555433332222211110 001 112234433 34566889999999998
Q ss_pred E--EecCCCCcccCC
Q 014040 282 T--WGWGRYGCLGHG 294 (432)
Q Consensus 282 ~--wG~n~~gqlg~~ 294 (432)
. +-.++.-.+|..
T Consensus 239 r~~~~~~~i~~~~R~ 253 (276)
T 3no0_A 239 YDKINQKDIPLSTKK 253 (276)
T ss_dssp EEEEEGGGSCBCCTT
T ss_pred EeeeCHHHCCCcCCC
Confidence 8 776665555543
No 44
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=88.47 E-value=14 Score=33.36 Aligned_cols=152 Identities=8% Similarity=-0.042 Sum_probs=83.0
Q ss_pred CCccEEEEeecCc-----eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeC
Q 014040 147 KNIFVVQAAIGNF-----FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQP 221 (432)
Q Consensus 147 ~~~~I~~v~~G~~-----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~ 221 (432)
....|..|+...+ ..+.-..+|.|..|-....++ .....+. .....|..++...+...+++-..
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------TIPKAQQ--MHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------EEEEEEE--ECSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------eeEEEec--cccCCEEEEEECcCCCEEEEEcC
Confidence 3456888888765 344456789999885443111 0001111 23345777777655544445445
Q ss_pred CCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEc--CCc--eEEEEeCCCCEEEEecCCCCcccCCCCC
Q 014040 222 SGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEE 297 (432)
Q Consensus 222 ~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~--h~~~lt~~g~vy~wG~n~~gqlg~~~~~ 297 (432)
+| .|..|-.... ..... ......|..+.. ..+ +.+.-..+|.|+.|-....
T Consensus 107 dg-~v~iwd~~~~------------~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--------- 161 (368)
T 3mmy_A 107 DK-TAKMWDLSSN------------QAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS--------- 161 (368)
T ss_dssp TS-EEEEEETTTT------------EEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS---------
T ss_pred CC-cEEEEEcCCC------------Cceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC---------
Confidence 88 9999953211 11111 123345666654 333 3444567899999954321
Q ss_pred CccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCC
Q 014040 298 CESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 298 ~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n 338 (432)
.....+.. ...+..+..-....++.+.++.+..|-..
T Consensus 162 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 162 --NPMMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp --SCSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred --cEEEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 01112221 12455555556677778889999998753
No 45
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=87.75 E-value=19 Score=34.12 Aligned_cols=238 Identities=9% Similarity=-0.031 Sum_probs=118.6
Q ss_pred ceEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCC-eEEEEecCCCEEEEeCCCC
Q 014040 46 SQAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG-RTMLISDAGQVYAFGKDSF 124 (432)
Q Consensus 46 ~~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~-~~~~lt~~g~vy~~G~n~~ 124 (432)
..++......+.-..||.|..|-.... .....+. .....|..++.... ..+.-..||.|..|-....
T Consensus 126 ~~~~~~~~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~-~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~ 193 (464)
T 3v7d_B 126 TCLQFEDNYVITGADDKMIRVYDSINK-----------KFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKG 193 (464)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTTT-----------EEEEEEC-CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTT
T ss_pred EEEEECCCEEEEEcCCCcEEEEECCCC-----------cEEEEEe-CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCC
Confidence 345555566666678889999853221 0011111 12236777765433 5566678899999964321
Q ss_pred CCccCCCCCcccccCCeeecccCCccEEEEeec----CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcc-----cc---
Q 014040 125 GEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDV-----EP--- 192 (432)
Q Consensus 125 gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~-----~p--- 192 (432)
.. ...+. .....|..++.. ....+.-..+|.|..|-................ .|
T Consensus 194 ~~-------------~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (464)
T 3v7d_B 194 CC-------------THVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259 (464)
T ss_dssp EE-------------EEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGC
T ss_pred cE-------------EEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCC
Confidence 10 01111 122345555543 244555678999998865543222111100000 00
Q ss_pred -ccccc-ccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcC--C
Q 014040 193 -HPLLG-TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG--A 268 (432)
Q Consensus 193 -~~i~~-~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G--~ 268 (432)
..+.. ......+..++......+.-.. +| .|+.|-... ...+..+......|..++.. .
T Consensus 260 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~--d~-~i~vwd~~~--------------~~~~~~~~~~~~~v~~~~~~~~~ 322 (464)
T 3v7d_B 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSY--DN-TLIVWDVAQ--------------MKCLYILSGHTDRIYSTIYDHER 322 (464)
T ss_dssp TTEEEEECCCSSCEEEEEEETTEEEEEET--TS-CEEEEETTT--------------TEEEEEECCCSSCEEEEEEETTT
T ss_pred eEEEEEccCccceEEEEcCCCCEEEEEeC--CC-eEEEEECCC--------------CcEEEEecCCCCCEEEEEEcCCC
Confidence 00000 0122346666554444444444 77 888884321 12222222233345554443 3
Q ss_pred ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEecCCCEEEEeCC
Q 014040 269 WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 269 ~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~~g~vy~~G~n 338 (432)
...+.-..||.|+.|-.... + ....+. .....|..++....+.+.-..||.|.+|-..
T Consensus 323 ~~l~sg~~dg~i~vwd~~~~-~----------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 323 KRCISASMDTTIRIWDLENG-E----------LMYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp TEEEEEETTSCEEEEETTTT-E----------EEEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETT
T ss_pred CEEEEEeCCCcEEEEECCCC-c----------EEEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECC
Confidence 35666678889999864221 0 011111 1233567777777777777889999999644
No 46
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=87.55 E-value=16 Score=33.10 Aligned_cols=199 Identities=15% Similarity=0.035 Sum_probs=96.4
Q ss_pred cEEEEEcCCC--eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec----CceEEEEeCCCC
Q 014040 96 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREGR 169 (432)
Q Consensus 96 ~i~~v~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G----~~~~~~lt~~G~ 169 (432)
.|..++.... ..+.-..||.|+.|-.... .......+. .....|..++.. ....+.-..||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-----------~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------THKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT-----------EEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC-----------cceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 5666665433 3444446888888854310 000001111 123457777764 445566678899
Q ss_pred EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEeccc--ceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCC
Q 014040 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 247 (432)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 247 (432)
|..|-.... ...+... .......|..++...+ ...+++-..+| .|..|-...... ..
T Consensus 81 v~iwd~~~~----------~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~---------~~ 139 (379)
T 3jrp_A 81 VLIWKEENG----------RWSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGT---------TS 139 (379)
T ss_dssp EEEEEEETT----------EEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCTTSC---------CC
T ss_pred EEEEEcCCC----------ceeEeee-ecCCCcceEEEEeCCCCCCCEEEEecCCC-cEEEEecCCCCc---------ee
Confidence 998854331 0001111 1123345777777654 33333333477 999885332110 11
Q ss_pred ceeeehhhccCCccEEEEcC---------------CceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCc
Q 014040 248 PRLIEQFQLLNLQPVVVAAG---------------AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK 312 (432)
Q Consensus 248 p~~~~~~~~~~~~i~~i~~G---------------~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 312 (432)
+..+ ......|..++.. ....++-..+|.|+.|-..... ....+..........
T Consensus 140 ~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~h~~~ 208 (379)
T 3jrp_A 140 PIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDW 208 (379)
T ss_dssp EEEE---ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSC
T ss_pred eEEe---cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC--------cceeeEEEEecccCc
Confidence 1111 1123344555443 3455566789999999542210 000111111112235
Q ss_pred EEEEecCCC-----cEEEEecCCCEEEEeCC
Q 014040 313 AIHVATGDY-----TTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 313 i~~i~~G~~-----~s~~lt~~g~vy~~G~n 338 (432)
|..++.... ..+....+|.|..|-..
T Consensus 209 v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp EEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred EeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 666665543 34444678999999643
No 47
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=87.47 E-value=18 Score=33.59 Aligned_cols=154 Identities=9% Similarity=0.009 Sum_probs=80.0
Q ss_pred EecCCCeEEEE---ecCCcEEEEeCCCCCCcCCCCCCCcccccccCcC--CCCcEEEEEcC---CCeEEEEecCCCEEEE
Q 014040 48 AIAGPGHSIAV---TSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL--QGIRIIQAAAG---AGRTMLISDAGQVYAF 119 (432)
Q Consensus 48 i~~G~~~~~~l---~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~--~~~~i~~v~~g---~~~~~~lt~~g~vy~~ 119 (432)
+++......++ ..+|.|++|=....+.+ +..+..+ ....|..++.. ....+.-..||.|..|
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~----------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRV----------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEEC----------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCC----------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 44555555544 34788888865544332 1112111 22367777764 3455556678999999
Q ss_pred eCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc---eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccc
Q 014040 120 GKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF---FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 196 (432)
Q Consensus 120 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~---~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~ 196 (432)
-....... .....|..........|..|+...+ ..+.-..||.|+.|-.... .....+.
T Consensus 110 ~~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~ 171 (402)
T 2aq5_A 110 EIPDGGLV-------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-----------AAVLTLG 171 (402)
T ss_dssp ECCTTCCS-------SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-----------EEEEEEC
T ss_pred EccCCCCc-------cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-----------CccEEEe
Confidence 75543211 0111222211122345777776654 3444567899998843221 0011110
Q ss_pred cccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014040 197 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 197 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
.......|..++...+...+++...+| .|+.|-
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd 204 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDK-RVRVIE 204 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTS-EEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCC-cEEEEe
Confidence 012334577777765544444444588 999995
No 48
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=87.31 E-value=15 Score=32.57 Aligned_cols=191 Identities=10% Similarity=0.000 Sum_probs=90.1
Q ss_pred cccceEecC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC--CeEEEEecCCCEEE
Q 014040 43 RENSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYA 118 (432)
Q Consensus 43 ~~i~~i~~G--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~vy~ 118 (432)
..|..++.. ....+.-..||.|..|...... ....+. .....|..++... ...+.-..||.|..
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-----------FEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-----------cchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 345554433 3444455678888888643211 011111 1223566665443 34445557888888
Q ss_pred EeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccc
Q 014040 119 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 196 (432)
Q Consensus 119 ~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~ 196 (432)
|-...... ...+. .....|..++.... ..+.-..+|.|..|-.... .....
T Consensus 92 wd~~~~~~-------------~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~- 144 (312)
T 4ery_A 92 WDVSSGKC-------------LKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------------KCLKT- 144 (312)
T ss_dssp EETTTCCE-------------EEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------------CEEEE-
T ss_pred EECCCCcE-------------EEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------------EEEEE-
Confidence 85432110 00111 11223555544433 3444567888888842211 01111
Q ss_pred cccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEE--cCCceEEEE
Q 014040 197 GTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVA--AGAWHAAVV 274 (432)
Q Consensus 197 ~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~--~G~~h~~~l 274 (432)
.......|..++...+...+++-..+| .|..|-...... ...+. ......+..++ ....+.++-
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYDG-LCRIWDTASGQC-----------LKTLI--DDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTS-CEEEEETTTCCE-----------EEEEC--CSSCCCEEEEEECTTSSEEEEE
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCce-----------eeEEe--ccCCCceEEEEECCCCCEEEEE
Confidence 012233477776665544555544577 888884321110 01110 11112233333 334456666
Q ss_pred eCCCCEEEEecC
Q 014040 275 GQDGRVCTWGWG 286 (432)
Q Consensus 275 t~~g~vy~wG~n 286 (432)
..+|.|..|-..
T Consensus 211 ~~d~~i~iwd~~ 222 (312)
T 4ery_A 211 TLDNTLKLWDYS 222 (312)
T ss_dssp ETTTEEEEEETT
T ss_pred cCCCeEEEEECC
Confidence 788899988643
No 49
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=83.76 E-value=24 Score=31.62 Aligned_cols=198 Identities=11% Similarity=-0.043 Sum_probs=94.3
Q ss_pred cccceEecCCC-----eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEE--------cCCCeEEE
Q 014040 43 RENSQAIAGPG-----HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA--------AGAGRTML 109 (432)
Q Consensus 43 ~~i~~i~~G~~-----~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~--------~g~~~~~~ 109 (432)
..|..++.... ..+.-..+|.|..|-..... .+..........|..+. ......+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE-----------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS-----------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC-----------ccEEEEEecccceEEEeeccccccCCCccEEEE
Confidence 45666666543 34444567888888443211 01111111223566653 23345666
Q ss_pred EecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccC---CccEEEEe------ecCceEEEEeCCCCEEEEEecCCCc
Q 014040 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK---NIFVVQAA------IGNFFTAVLSREGRVYTFSWGNDAR 180 (432)
Q Consensus 110 lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~---~~~I~~v~------~G~~~~~~lt~~G~vy~~G~n~~gq 180 (432)
-..||.|..|-...... ....+.... ...|..++ ......+.-.++|.|+.|-....
T Consensus 135 ~~~d~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 200 (357)
T 3i2n_A 135 GSRDGTVKVWDPRQKDD------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-- 200 (357)
T ss_dssp EETTSCEEEECTTSCSS------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--
T ss_pred EeCCCeEEEEeCCCCCC------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--
Confidence 67789999996543210 011111111 22466665 33445555667899998843221
Q ss_pred CCCCCCCCcccccccccccCCCCEEEEEecc---cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhcc
Q 014040 181 LGHHTEPNDVEPHPLLGTLENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLL 257 (432)
Q Consensus 181 lg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~---~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 257 (432)
.. +........|..++... +...+++-..+| .|+.|-...... . .......+...
T Consensus 201 ----------~~--~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~--------~-~~~~~~~~~~~ 258 (357)
T 3i2n_A 201 ----------AL--RWETNIKNGVCSLEFDRKDISMNKLVATSLEG-KFHVFDMRTQHP--------T-KGFASVSEKAH 258 (357)
T ss_dssp ----------EE--EEEEECSSCEEEEEESCSSSSCCEEEEEESTT-EEEEEEEEEEET--------T-TEEEEEEEECC
T ss_pred ----------ce--eeecCCCCceEEEEcCCCCCCCCEEEEECCCC-eEEEEeCcCCCc--------c-cceeeeccCCC
Confidence 01 11112233577777664 333333333477 998885321100 0 00000011123
Q ss_pred CCccEEEEcCCc---eEEEEeCCCCEEEEecCC
Q 014040 258 NLQPVVVAAGAW---HAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 258 ~~~i~~i~~G~~---h~~~lt~~g~vy~wG~n~ 287 (432)
...|..++...+ ..+.-..+|.|+.|-...
T Consensus 259 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 259 KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence 345666655444 344457889999997543
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=82.90 E-value=27 Score=31.56 Aligned_cols=208 Identities=11% Similarity=-0.062 Sum_probs=94.6
Q ss_pred cEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC--ceEEEEeCCCCEE
Q 014040 96 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FFTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~--~~~~~lt~~G~vy 171 (432)
.|..++.. ....+.-..||.|+.|-.... + ..+..........|..++... ...+.-..+|.|+
T Consensus 54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR-T-----------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 121 (372)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEETT-E-----------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEE
T ss_pred cccEEEEeCCCCEEEEEcCCCeEEEEECCCC-e-----------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEE
Confidence 56555543 445555667888888854211 0 011111111233466666543 3455566788888
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCC-----CCCC
Q 014040 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSR-----TDEK 246 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~-----~~~~ 246 (432)
.|-...... ......+.. .....|..++...+...+++-..+| .|+.|-..... +..... ....
T Consensus 122 i~d~~~~~~--------~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg-~i~~~d~~~~~-~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 122 ICYFEQEND--------WWVCKHIKK-PIRSTVLSLDWHPNSVLLAAGSCDF-KCRIFSAYIKE-VEERPAPTPWGSKMP 190 (372)
T ss_dssp EEEEETTTT--------EEEEEEECT-TCCSCEEEEEECTTSSEEEEEETTS-CEEEEECCCTT-TSCCCCCBTTBSCCC
T ss_pred EEEecCCCc--------ceeeeeeec-ccCCCeeEEEEcCCCCEEEEEcCCC-CEEEEEccccc-ccccccccccccccc
Confidence 875443210 000011111 1234577777665544444444477 88888532110 000000 0011
Q ss_pred CceeeehhhccCCccEEEEcCC--ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecC-CCcE
Q 014040 247 HPRLIEQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTT 323 (432)
Q Consensus 247 ~p~~~~~~~~~~~~i~~i~~G~--~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G-~~~s 323 (432)
....+..+......|..+.... .+.+....+|.|+.|-...... ...+. .....|..++.. ....
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-----------VATLA-SETLPLLAVTFITESSL 258 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-----------EEEEE-CSSCCEEEEEEEETTEE
T ss_pred hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-----------eEEEc-cCCCCeEEEEEecCCCE
Confidence 1222222322333455555533 3555567788888886432110 11111 112234444433 2234
Q ss_pred EEEecCCCEEEEeCC
Q 014040 324 FVVSEDGDVYSFGCG 338 (432)
Q Consensus 324 ~~lt~~g~vy~~G~n 338 (432)
++...+|.|+.|-..
T Consensus 259 l~~~~d~~i~i~~~~ 273 (372)
T 1k8k_C 259 VAAGHDCFPVLFTYD 273 (372)
T ss_dssp EEEETTSSCEEEEEE
T ss_pred EEEEeCCeEEEEEcc
Confidence 444567777777643
No 51
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.48 E-value=26 Score=31.19 Aligned_cols=220 Identities=14% Similarity=0.045 Sum_probs=116.9
Q ss_pred CccEEEEee--cCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEec---ccceeEEEeeCC
Q 014040 148 NIFVVQAAI--GNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAG---YCYLLALACQPS 222 (432)
Q Consensus 148 ~~~I~~v~~--G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g---~~~~~~l~~~~~ 222 (432)
+..+..+.. ..++.+++|++|++|.--....... . ...+ ...+++|+.+-+- ..+.+++|. +
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~---~~~l--l~~~e~i~~v~~~~~~~~~~v~~T~--~ 89 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------S---KVSL--KSREEKIVGAFIREKFGNRLLLATK--K 89 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------E---ECCC--SSTTCCEEEEEEGGGSCSEEEEEET--T
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------c---cccc--CCCCCEEEEEECCcCCCCEEEEEeC--C
Confidence 444555443 3445889999999995422111000 0 0002 2457788888762 235666776 8
Q ss_pred CCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEc--CCceEEEEeCCCCEEEEecCCCCcccCCCCCCcc
Q 014040 223 GMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECES 300 (432)
Q Consensus 223 G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~ 300 (432)
| .+.-.--.++.+- ........++ .+..++.+.. +..+.+++|++|++|.+-..+.-.+|.......
T Consensus 90 G-~iKr~~l~~~~~~--------~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~- 158 (276)
T 3no0_A 90 G-YVKKIPLAEFEYK--------AQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQ- 158 (276)
T ss_dssp S-EEEEEEGGGTTTC--------STTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEE-
T ss_pred C-EEEEEEHHHhhhh--------cCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEE-
Confidence 8 8777643333210 0111111122 1234444333 455789999999999998766655554322111
Q ss_pred CcEEecccCCCcEEEEecC--CCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEE
Q 014040 301 VPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQI 378 (432)
Q Consensus 301 ~p~~i~~~~~~~i~~i~~G--~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i 378 (432)
.+...++.+|+.+..- ..+.+++|++|.+.-.-...+-..+.+. .. +..+ ..+..++.+
T Consensus 159 ---~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~g--------kG-------v~~i-~~~~~lv~~ 219 (276)
T 3no0_A 159 ---GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGV--------KG-------TEVS-GTKDTLVDL 219 (276)
T ss_dssp ---CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTC--------CC-------EECC-CSSSCEEEE
T ss_pred ---EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCC--------cc-------eEEE-cCCCcEEEE
Confidence 1233345567665543 3466778999988887655443322221 00 0000 122334443
Q ss_pred eeeccccccceEEEEeCCCCEEE--ecCCCCcccCCc
Q 014040 379 SLTNSIYWNAHTFALTESGKLYA--FGAGDKGQLGIE 413 (432)
Q Consensus 379 ~~~~~~~G~~~~~~lt~~G~v~~--wG~n~~gqLG~g 413 (432)
... -+.+..+++|++|++.. +-.++--.+|..
T Consensus 220 ~~~---~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R~ 253 (276)
T 3no0_A 220 IPI---KEEVELLITTKNGKAFYDKINQKDIPLSTKK 253 (276)
T ss_dssp EEE---SSEEEEEEEETTSCEEEEEEEGGGSCBCCTT
T ss_pred EEe---CCCCEEEEEcCCCeEEEeeeCHHHCCCcCCC
Confidence 321 05678888999999998 755555444433
No 52
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=82.01 E-value=34 Score=32.16 Aligned_cols=262 Identities=12% Similarity=0.042 Sum_probs=118.6
Q ss_pred cccceEecCCC---eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC---CCeEEEEecCCCE
Q 014040 43 RENSQAIAGPG---HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG---AGRTMLISDAGQV 116 (432)
Q Consensus 43 ~~i~~i~~G~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g---~~~~~~lt~~g~v 116 (432)
..|.+++.-.. ..+.-..+|.|++|-........ .......|...-......|..++.. ....+.-..+|.|
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC--CTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCE
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc--CccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeE
Confidence 45666666553 23333567889999754321100 0000011111101112234444332 2255556678899
Q ss_pred EEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC---ceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccc
Q 014040 117 YAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH 193 (432)
Q Consensus 117 y~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~---~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~ 193 (432)
..|-.+..... .....+..........|..|+... ...+....+|.|+.|-...... ..+.
T Consensus 207 ~vwd~~~~~~~-------~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---------~~~~ 270 (430)
T 2xyi_A 207 CLWDINATPKE-------HRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---------SKPS 270 (430)
T ss_dssp EEEETTSCCBG-------GGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---------SSCS
T ss_pred EEEeCCCCCCC-------CceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---------Ccce
Confidence 99976542110 111111111112234577777643 3444556889999885443210 0111
Q ss_pred ccccccCCCCEEEEEecccce-eEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCc---
Q 014040 194 PLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--- 269 (432)
Q Consensus 194 ~i~~~~~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--- 269 (432)
.... .....|..++...... ++++-..+| .|..|-.....+ + +..+......|..+.....
T Consensus 271 ~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~~~~-----------~--~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 271 HTVD-AHTAEVNCLSFNPYSEFILATGSADK-TVALWDLRNLKL-----------K--LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp EEEE-CCSSCEEEEEECSSCTTEEEEEETTS-EEEEEETTCTTS-----------C--SEEEECCSSCEEEEEECSSCTT
T ss_pred eEee-cCCCCeEEEEeCCCCCCEEEEEeCCC-eEEEEeCCCCCC-----------C--eEEeecCCCCEEEEEECCCCCC
Confidence 1111 2233477777665432 333333477 999996432211 1 1112222335666655443
Q ss_pred eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccC--CCcEEEEecCCC---cEEEEecCCCEEEEeC
Q 014040 270 HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALN--DVKAIHVATGDY---TTFVVSEDGDVYSFGC 337 (432)
Q Consensus 270 h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~--~~~i~~i~~G~~---~s~~lt~~g~vy~~G~ 337 (432)
..+.-..+|.|..|-....+..-.........|..+.... ...|..++.... ..+....+|.|.+|-.
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence 2444567888999875442211000000001122222222 224666655433 3344566788888864
No 53
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=81.87 E-value=32 Score=31.79 Aligned_cols=155 Identities=16% Similarity=0.007 Sum_probs=78.2
Q ss_pred EEcCCCeEEEE---ecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC---ceEEEEeCCCCEEEE
Q 014040 100 AAAGAGRTMLI---SDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSREGRVYTF 173 (432)
Q Consensus 100 v~~g~~~~~~l---t~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~---~~~~~lt~~G~vy~~ 173 (432)
+++......++ ..+|.|+.|-.+..+.+.. ..+ .+. -....|..++... ...+.-..||.|..|
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~~~-~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw 109 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDK--------NVP-LVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------TCC-CBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------CCc-eEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEE
Confidence 45555555444 4578999997655433210 001 111 1233577777643 444555678999988
Q ss_pred EecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccc-eeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeee
Q 014040 174 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIE 252 (432)
Q Consensus 174 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~ 252 (432)
-....+.... ...+..... .....|..++...+. .++++...+| .|+.|-... ...+.
T Consensus 110 ~~~~~~~~~~-----~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~~--------------~~~~~ 168 (402)
T 2aq5_A 110 EIPDGGLVLP-----LREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVGT--------------GAAVL 168 (402)
T ss_dssp ECCTTCCSSC-----BCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTS-CEEEEETTT--------------TEEEE
T ss_pred EccCCCCccc-----cCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECCC--------------CCccE
Confidence 6544221110 001111111 233457777776654 3444444577 899984321 11122
Q ss_pred hh--hccCCccEEEEcC--CceEEEEeCCCCEEEEec
Q 014040 253 QF--QLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 253 ~~--~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~ 285 (432)
.+ ......|..++.. ....+.-..||.|+.|-.
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEET
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeC
Confidence 22 2233345555543 334555567888888864
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=81.65 E-value=31 Score=31.48 Aligned_cols=216 Identities=10% Similarity=-0.020 Sum_probs=98.9
Q ss_pred CCcEEEEEcCC---CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC---ceEEEEeCC
Q 014040 94 GIRIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN---FFTAVLSRE 167 (432)
Q Consensus 94 ~~~i~~v~~g~---~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~---~~~~~lt~~ 167 (432)
...|..++... ...+.-..||.|..|-............ ......+..........|..++... ...+.-..+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC-KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE-CEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec-cccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 34677776643 4455566799999997554321110000 0000000000011234577777643 455666778
Q ss_pred CCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc---cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCC
Q 014040 168 GRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY---CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTD 244 (432)
Q Consensus 168 G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~---~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~ 244 (432)
|.|..|-.... .+.... .....+..+.... +..++++-..+| .|+.|-.....
T Consensus 122 ~~i~iwd~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~~--------- 177 (408)
T 4a11_B 122 KTLKVWDTNTL------------QTADVF--NFEETVYSHHMSPVSTKHCLVAVGTRGP-KVQLCDLKSGS--------- 177 (408)
T ss_dssp SEEEEEETTTT------------EEEEEE--ECSSCEEEEEECSSCSSCCEEEEEESSS-SEEEEESSSSC---------
T ss_pred CeEEEeeCCCC------------ccceec--cCCCceeeeEeecCCCCCcEEEEEcCCC-eEEEEeCCCcc---------
Confidence 99998843221 011111 1122344444443 222333333477 88888432111
Q ss_pred CCCceeeehhhccCCccEEEEcCCc--e-EEEEeCCCCEEEEecCCCCcc-cC---CCCCCccCcEEecccCCCcEEEEe
Q 014040 245 EKHPRLIEQFQLLNLQPVVVAAGAW--H-AAVVGQDGRVCTWGWGRYGCL-GH---GNEECESVPKVVQALNDVKAIHVA 317 (432)
Q Consensus 245 ~~~p~~~~~~~~~~~~i~~i~~G~~--h-~~~lt~~g~vy~wG~n~~gql-g~---~~~~~~~~p~~i~~~~~~~i~~i~ 317 (432)
.+..+......|..++.... + .+.-..+|.|+.|-....... -. ........+..........|..++
T Consensus 178 -----~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 252 (408)
T 4a11_B 178 -----CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLC 252 (408)
T ss_dssp -----CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEE
T ss_pred -----eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEE
Confidence 11112223334555554433 2 445678899999975432110 00 000000000000011223456565
Q ss_pred cCC--CcEEEEecCCCEEEEeCCC
Q 014040 318 TGD--YTTFVVSEDGDVYSFGCGE 339 (432)
Q Consensus 318 ~G~--~~s~~lt~~g~vy~~G~n~ 339 (432)
... .+.+....+|.|..|-...
T Consensus 253 ~~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 253 FTSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTT
T ss_pred EcCCCCEEEEecCCCeEEEEECCC
Confidence 543 3455557789999998654
No 55
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=79.59 E-value=31 Score=30.08 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=12.0
Q ss_pred eEEEEeCCCCEEEEecC
Q 014040 270 HAAVVGQDGRVCTWGWG 286 (432)
Q Consensus 270 h~~~lt~~g~vy~wG~n 286 (432)
..++++.+|++|+....
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45777788888876643
No 56
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.23 E-value=38 Score=31.00 Aligned_cols=222 Identities=14% Similarity=0.038 Sum_probs=118.6
Q ss_pred EecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEcCC-----CeEEEEecCCCEEEEe
Q 014040 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAGA-----GRTMLISDAGQVYAFG 120 (432)
Q Consensus 48 i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~g~-----~~~~~lt~~g~vy~~G 120 (432)
.+....+.+++|+.|++|..--.+--..+. ...-.| ..++..++.+|+.+.... ...+++|++|.+.-.-
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r---~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~ 125 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASR---TARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSK 125 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCS---SSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCc---cCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeE
Confidence 345667788899999999986443221111 111222 234444677888886653 4688999999888776
Q ss_pred CCCCCCccCCCCCcccccCCee-ecccCCccEEE--EeecCceEEEEeCCCCEEEEEec--CCCcCCCCCCCCccccccc
Q 014040 121 KDSFGEAEYGVQGTKLVTSPQL-VESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWG--NDARLGHHTEPNDVEPHPL 195 (432)
Q Consensus 121 ~n~~gqlg~~~~~~~~~~~p~~-v~~~~~~~I~~--v~~G~~~~~~lt~~G~vy~~G~n--~~gqlg~~~~~~~~~p~~i 195 (432)
..++-... ..... +..-++..++. ++.+.++.+++|++|++|.+-.. .-...|...... +.
T Consensus 126 l~~~~~~~---------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv-----~~ 191 (327)
T 3uc1_A 126 LTDFDSNR---------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGV-----QG 191 (327)
T ss_dssp GGGGCCCC---------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCE-----ES
T ss_pred HHHhhccc---------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCe-----ee
Confidence 54432100 01111 11112334444 34466788999999999988766 433333222111 11
Q ss_pred ccccCCCCEEEEEecc--cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEE--EEcCCceE
Q 014040 196 LGTLENIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHA 271 (432)
Q Consensus 196 ~~~~~~~~i~~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~--i~~G~~h~ 271 (432)
.....+.+|+.+..-. .+.+++|+ +| .+.-.--..+...+++.. ....-.+...+.+++. +..+....
T Consensus 192 i~L~~~d~Vv~~~~~~~~~~ll~~T~--~G-~~Krt~l~e~~~~~R~~~-----G~~~~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 192 MRFNIDDRLLSLNVVREGTYLLVATS--GG-YAKRTAIEEYPVQGRGGK-----GVLTVMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp SCCCTTCCEEEEEECCTTCEEEEEET--TS-EEEEEEGGGSCBCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEE
T ss_pred ecCCCCCEEEEEEEECCCCEEEEEeC--CC-cEEEEEHHHccccCcCCC-----cEEEEEecCCCCeEEEEEEeCCCccE
Confidence 1113566787776653 34555665 77 665543222221111111 0011011111123333 33466789
Q ss_pred EEEeCCCCEEEEecCCCCcccCC
Q 014040 272 AVVGQDGRVCTWGWGRYGCLGHG 294 (432)
Q Consensus 272 ~~lt~~g~vy~wG~n~~gqlg~~ 294 (432)
+++|++|++.-+-..+-..+|..
T Consensus 264 ~l~T~~G~~ir~~~~~i~~~gR~ 286 (327)
T 3uc1_A 264 YAVTSGGGVIRTAARQVRKAGRQ 286 (327)
T ss_dssp EEEEGGGCEEEEEGGGSCBCCTT
T ss_pred EEEcCCCeEEEEehhhccccCCC
Confidence 99999999988876655555543
No 57
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.35 E-value=41 Score=30.82 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=114.1
Q ss_pred EeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccc--ccccccCCCCEEEEEecc-----cceeEEEeeCCCCEE
Q 014040 154 AAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH--PLLGTLENIPVVQIAAGY-----CYLLALACQPSGMAV 226 (432)
Q Consensus 154 v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~--~i~~~~~~~~i~~i~~g~-----~~~~~l~~~~~G~~v 226 (432)
.+...++.+++|+.|++|..-...-...+... .=.|. .+. ...+++|+.+.+.. .+.+++|. +| .+
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~---~G~~i~~~l~-l~~~e~i~~~~~~~~~~~e~~~v~~T~--~G-~i 121 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTA---RGQHVANLLA-FQPEERIAQVIQIRGYTDAPYLVLATR--NG-LV 121 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSS---CCEEHHHHTT-CCTTCCEEEEEEESSTTSSSEEEEEET--TS-EE
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccC---CCEEHHHccC-CCCCCEEEEEEEeccCCCCCEEEEEcC--CC-EE
Confidence 34566678889999999977544332221111 11111 111 13567888877664 34566665 88 77
Q ss_pred EEEccCCCCCcCCCCCCCCCCceeeehhhccCCccE--EEEcCCceEEEEeCCCCEEEEecC--CCCcccCCCCCCccCc
Q 014040 227 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPV--VVAAGAWHAAVVGQDGRVCTWGWG--RYGCLGHGNEECESVP 302 (432)
Q Consensus 227 y~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~--~i~~G~~h~~~lt~~g~vy~wG~n--~~gqlg~~~~~~~~~p 302 (432)
.-.--..+... .. .......+.. +..++ .+..+..+.+++|++|++|.+--. +--.+|..... -
T Consensus 122 Kr~~l~~~~~~------~r-~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G----v 189 (327)
T 3uc1_A 122 KKSKLTDFDSN------RS-GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG----V 189 (327)
T ss_dssp EEEEGGGGCCC------CS-SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC----E
T ss_pred EEeEHHHhhcc------cc-CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC----e
Confidence 76543222110 00 1111111221 22333 344566789999999999999876 44444433211 1
Q ss_pred EEecccCCCcEEEEecCC--CcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEee
Q 014040 303 KVVQALNDVKAIHVATGD--YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISL 380 (432)
Q Consensus 303 ~~i~~~~~~~i~~i~~G~--~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~ 380 (432)
..+...++.+|+.+..-. .+.+++|++|.+.-.-...+-..+.+. .-...-.+...+..++.+..
T Consensus 190 ~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~-------------~G~~~~~l~~~~d~lv~~~~ 256 (327)
T 3uc1_A 190 QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGG-------------KGVLTVMYDRRRGRLVGALI 256 (327)
T ss_dssp ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTS-------------CCEESSCCCTTTCSEEEEEE
T ss_pred eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCC-------------CcEEEEEecCCCCeEEEEEE
Confidence 123333566777766543 356777888876665433322111111 00111111111223443332
Q ss_pred eccccccceEEEEeCCCCEEEecCCCCcccC
Q 014040 381 TNSIYWNAHTFALTESGKLYAFGAGDKGQLG 411 (432)
Q Consensus 381 ~~~~~G~~~~~~lt~~G~v~~wG~n~~gqLG 411 (432)
.. +....+++|++|++..+-.++--.+|
T Consensus 257 ~~---~~~~i~l~T~~G~~ir~~~~~i~~~g 284 (327)
T 3uc1_A 257 VD---DDSELYAVTSGGGVIRTAARQVRKAG 284 (327)
T ss_dssp EC---TTCEEEEEEGGGCEEEEEGGGSCBCC
T ss_pred eC---CCccEEEEcCCCeEEEEehhhccccC
Confidence 10 56788899999999888444433333
No 58
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.96 E-value=65 Score=32.94 Aligned_cols=232 Identities=11% Similarity=-0.000 Sum_probs=109.4
Q ss_pred cccceEecC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEE--cCCCeEEEEecCCCEEE
Q 014040 43 RENSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA--AGAGRTMLISDAGQVYA 118 (432)
Q Consensus 43 ~~i~~i~~G--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~--~g~~~~~~lt~~g~vy~ 118 (432)
.+|..++.- ....+.-..+|.|..|-..... ....+. .....|..++ ......+.-..+|.|+.
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------EVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 345444443 3334444567888888432210 111111 1122454443 34455666778899999
Q ss_pred EeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccc
Q 014040 119 FGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLL 196 (432)
Q Consensus 119 ~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~ 196 (432)
|-...... ...+. .....|..++...+ ..+.-..+|.|..|-..... ......
T Consensus 82 w~~~~~~~-------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~ 136 (814)
T 3mkq_A 82 FNYNTGEK-------------VVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----------ALEQTF 136 (814)
T ss_dssp EETTTCCE-------------EEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----------EEEEEE
T ss_pred EECCCCcE-------------EEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----------eEEEEE
Confidence 86543211 01111 12234666665544 34456678888888543210 011111
Q ss_pred cccCCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEc----CCceE
Q 014040 197 GTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA----GAWHA 271 (432)
Q Consensus 197 ~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~----G~~h~ 271 (432)
. .....|..++... +...+++...+| .|+.|-.... .....+... ....+..++. .....
T Consensus 137 ~-~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~~~~-----------~~~~~~~~~--~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 137 E-GHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSLGQS-----------TPNFTLTTG--QERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp E-CCSSCEEEEEEETTEEEEEEEEETTS-EEEEEETTCS-----------SCSEEEECC--CTTCCCEEEECCSTTCCEE
T ss_pred c-CCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEECCCC-----------cceeEEecC--CCCCEEEEEEEECCCCCEE
Confidence 1 2234477776654 333333333478 9999953211 011111111 1122333333 33455
Q ss_pred EEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCC--cEEEEecCCCEEEEeCC
Q 014040 272 AVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY--TTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 272 ~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~--~s~~lt~~g~vy~~G~n 338 (432)
++-..+|.|+.|-.... .....+.. ....|..++.... ..+.-..+|.|+.|-..
T Consensus 202 ~~~~~dg~i~~~d~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 202 ITASDDLTIKIWDYQTK-----------SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp EEECTTSEEEEEETTTT-----------EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred EEEeCCCEEEEEECCCC-----------cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 56678899999954221 11111221 1224555554433 34445668999999644
No 59
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=77.67 E-value=39 Score=30.17 Aligned_cols=301 Identities=8% Similarity=-0.041 Sum_probs=134.6
Q ss_pred eecccceEecCCCe-EEEEec-----CCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC-----CeEEE
Q 014040 41 CRRENSQAIAGPGH-SIAVTS-----KGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA-----GRTML 109 (432)
Q Consensus 41 ~~~~i~~i~~G~~~-~~~l~~-----~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----~~~~~ 109 (432)
....|.+++.-... .++.+. ||.|..|-..... ..+... ......|..++... ...+.
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 85 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLRE-IEKAKPIKCGTFGATSLQQRYLAT 85 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEE-EEESSCEEEEECTTCCTTTCCEEE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceee-ecccCcEEEEEEcCCCCCCceEEE
Confidence 34466666655432 233332 7888888433210 011110 01223677776654 44555
Q ss_pred EecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEee--------cCceEEEEeCCCCEEEEEecCCCcC
Q 014040 110 ISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--------GNFFTAVLSREGRVYTFSWGNDARL 181 (432)
Q Consensus 110 lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~--------G~~~~~~lt~~G~vy~~G~n~~gql 181 (432)
-..||.|..|-..... .+..........|..+.. .....+.-..+|.|..|-.....
T Consensus 86 ~~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-- 150 (357)
T 3i2n_A 86 GDFGGNLHIWNLEAPE-------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-- 150 (357)
T ss_dssp EETTSCEEEECTTSCS-------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS--
T ss_pred ecCCCeEEEEeCCCCC-------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC--
Confidence 6678999999654321 011111112334665532 23355556788999988332211
Q ss_pred CCCCCCCcccccccc-c--ccCCCCEEEEEe----cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehh
Q 014040 182 GHHTEPNDVEPHPLL-G--TLENIPVVQIAA----GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQF 254 (432)
Q Consensus 182 g~~~~~~~~~p~~i~-~--~~~~~~i~~i~~----g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~ 254 (432)
.+.... . ......+..++. ..+...+++-..+| .|+.|-.... .+...
T Consensus 151 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~------------~~~~~--- 205 (357)
T 3i2n_A 151 ---------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG-DIKLFDLRNM------------ALRWE--- 205 (357)
T ss_dssp ---------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS-EEEEEETTTT------------EEEEE---
T ss_pred ---------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC-eEEEEECccC------------ceeee---
Confidence 011111 0 011224666652 22222333333377 9999853221 01111
Q ss_pred hccCCccEEEEcC-----CceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCc---EEEE
Q 014040 255 QLLNLQPVVVAAG-----AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYT---TFVV 326 (432)
Q Consensus 255 ~~~~~~i~~i~~G-----~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~---s~~l 326 (432)
......|..+... ....++-..+|.|+.|-...... .......... .....|..++..... .+.-
T Consensus 206 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~ 278 (357)
T 3i2n_A 206 TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP------TKGFASVSEK-AHKSTVWQVRHLPQNRELFLTA 278 (357)
T ss_dssp EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET------TTEEEEEEEE-CCSSCEEEEEEETTEEEEEEEE
T ss_pred cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc------ccceeeeccC-CCcCCEEEEEECCCCCcEEEEE
Confidence 1123345555554 34555667889999886432100 0000000111 123356666655443 3334
Q ss_pred ecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEE-EEeCCCCEEEecCC
Q 014040 327 SEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTF-ALTESGKLYAFGAG 405 (432)
Q Consensus 327 t~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~-~lt~~G~v~~wG~n 405 (432)
..+|.|+.|-.......-... ..............+..+..-...|..++.... |. ..+ .-..||.|..|-..
T Consensus 279 ~~dg~i~iwd~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~-~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 279 GGAGGLHLWKYEYPIQRSKKD---SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD--KR-GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp ETTSEEEEEEEECCSCC--CC---TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS--ST-TEEEEEETTSEEEEEEEC
T ss_pred eCCCcEEEeecCCCccccccc---CCCCccccccccceeeccccCCCCeeEEEEcCC--CC-eEEEEecCCCcEEEEECC
Confidence 678899999754322111000 000000000111234444334456777776221 21 222 34678888888543
No 60
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=77.11 E-value=44 Score=30.52 Aligned_cols=240 Identities=12% Similarity=0.022 Sum_probs=108.0
Q ss_pred cEEEEEcC-CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCEEE
Q 014040 96 RIIQAAAG-AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYT 172 (432)
Q Consensus 96 ~i~~v~~g-~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~vy~ 172 (432)
.|..|+-. ....++-..+|.|..|--..... .........-....|..|+...+ ..+.-..+|.|..
T Consensus 96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~----------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 96 GVTDVAWVSEKGILVASDSGAVELWEILEKES----------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp CEEEEEEETTTEEEEEETTSCEEEC------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CEEEEEEcCCCCEEEEECCCEEEEeeccccce----------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 46666533 33455556678888874322110 00111111111334777666544 3444567888888
Q ss_pred EEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccc-eeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 173 FSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 173 ~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
|-.... .+.... ......|..++..... .++++...+| .|..|-.... .+...
T Consensus 166 wd~~~~------------~~~~~~-~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~------------~~~~~ 219 (357)
T 4g56_B 166 WDLSQK------------AVLKSY-NAHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKP------------KPATR 219 (357)
T ss_dssp EETTTT------------EEEEEE-CCCSSCEEEEEECTTCSSCEEEEETTS-CEEECCTTSS------------SCBCB
T ss_pred EECCCC------------cEEEEE-cCCCCCEEEEEEccCCCceeeeeccCC-ceEEEECCCC------------ceeee
Confidence 842211 011110 1223357777664332 2333333477 8988832211 11111
Q ss_pred ehhhccCCccEEEEcCC--ceEEE-EeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCC---CcEEE
Q 014040 252 EQFQLLNLQPVVVAAGA--WHAAV-VGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD---YTTFV 325 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~G~--~h~~~-lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~~s~~ 325 (432)
..+......+..++... .+.++ -..++.|+.|-.... .....+. .....|..++... ...+.
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-----------~~~~~~~-~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-----------DSAQTSA-VHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-----------GGCEEEC-CCSSCEEEEEECSSSSCCEEE
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCC-----------cEeEEEe-ccceeEEEEEEcCCCCCEEEE
Confidence 11111223455555432 23333 367888998854221 1111222 1223566666432 23333
Q ss_pred EecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEecCC
Q 014040 326 VSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFGAG 405 (432)
Q Consensus 326 lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n 405 (432)
-..||.|++|=... ...+..+. -...|..|+.+-. .....+.-..||+|..|=..
T Consensus 288 gs~D~~i~iwd~~~----------------------~~~~~~~~-H~~~V~~vafsP~--d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 288 ISEDCTVAVLDADF----------------------SEVFRDLS-HRDFVTGVAWSPL--DHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp EETTSCEEEECTTS----------------------CEEEEECC-CSSCEEEEEECSS--STTEEEEEETTSCEEEEECC
T ss_pred EeCCCEEEEEECCC----------------------CcEeEECC-CCCCEEEEEEeCC--CCCEEEEEcCCCeEEEEECC
Confidence 46789999993211 01122221 2345777775100 11233334689999999765
Q ss_pred CCc
Q 014040 406 DKG 408 (432)
Q Consensus 406 ~~g 408 (432)
..+
T Consensus 343 ~~~ 345 (357)
T 4g56_B 343 SEG 345 (357)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 61
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=76.86 E-value=16 Score=32.89 Aligned_cols=17 Identities=18% Similarity=0.024 Sum_probs=12.5
Q ss_pred CceEEEEeCCCCEEEEec
Q 014040 268 AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (432)
..|+++. .+++||++|-
T Consensus 140 ~~~~~~~-~~~~iyv~GG 156 (315)
T 4asc_A 140 YGHTVLS-HMDLVYVIGG 156 (315)
T ss_dssp BSCEEEE-ETTEEEEECC
T ss_pred cceeEEE-ECCEEEEEeC
Confidence 4566665 5778999985
No 62
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=76.83 E-value=40 Score=29.88 Aligned_cols=68 Identities=6% Similarity=-0.080 Sum_probs=36.5
Q ss_pred CCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC-ceEEEEeCCCCE
Q 014040 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-WHAAVVGQDGRV 280 (432)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~-~h~~~lt~~g~v 280 (432)
..|..++...+..++++-..|| .|..|-.... ..+..+.. ...+..+.... .+.++...++.|
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg-~i~iwd~~~~--------------~~~~~~~~-~~~v~~~~~~~~~~~~~~~~d~~i 279 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDG-QAMLWDLNEG--------------KHLYTLDG-GDIINALCFSPNRYWLCAATGPSI 279 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTC-EEEEEETTTT--------------EEEEEEEC-SSCEEEEEECSSSSEEEEEETTEE
T ss_pred CcEEEEEECCCCCEEEEEeCCC-eEEEEEeccC--------------ceeeeecC-CceEEeeecCCCCceeeccCCCEE
Confidence 3577777665555555555588 9998843321 11211111 12333443332 345566678888
Q ss_pred EEEec
Q 014040 281 CTWGW 285 (432)
Q Consensus 281 y~wG~ 285 (432)
+.|-.
T Consensus 280 ~iwd~ 284 (340)
T 4aow_A 280 KIWDL 284 (340)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88854
No 63
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=76.28 E-value=47 Score=30.42 Aligned_cols=65 Identities=9% Similarity=0.091 Sum_probs=36.1
Q ss_pred cEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec--CceEEEEeCCCCEE
Q 014040 96 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G--~~~~~~lt~~G~vy 171 (432)
.|..++... ...+.-..+|.|+.|-. .++ . ...+. .....|..++.. ....+....+|.|+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~--------~----~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK--TGA--------L----LNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TSC--------E----EEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCC--------e----eeecc-CCCccEEEEEECCCCCEEEEEecCCeEE
Confidence 576666543 34555667888999851 111 0 01111 123346666654 33455567789999
Q ss_pred EEEe
Q 014040 172 TFSW 175 (432)
Q Consensus 172 ~~G~ 175 (432)
.|-.
T Consensus 175 iwd~ 178 (425)
T 1r5m_A 175 LWNV 178 (425)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8854
No 64
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=75.79 E-value=75 Score=32.58 Aligned_cols=201 Identities=13% Similarity=-0.001 Sum_probs=99.0
Q ss_pred cccceEecC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC----CCeEEEEecCCCE
Q 014040 43 RENSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQV 116 (432)
Q Consensus 43 ~~i~~i~~G--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~g~v 116 (432)
..|..++.. ....+.-..||.|.+|=... ....+..........|..++.. ....+.-..||.|
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~----------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I 79 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEET----------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCC----------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence 345555543 23344445788898884321 0011111111122367777754 4456667788999
Q ss_pred EEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC----ceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccc
Q 014040 117 YAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN----FFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEP 192 (432)
Q Consensus 117 y~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~----~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p 192 (432)
+.|-..... ..+..........|..++... ...+..+.+|.|..|-...... ...
T Consensus 80 ~vwd~~~~~------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~---------~~~ 138 (753)
T 3jro_A 80 LIWKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------TSP 138 (753)
T ss_dssp EEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC---------CCC
T ss_pred EEEECCCCc------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC---------cce
Confidence 999643210 001111112234577776654 3556677889999885433211 001
Q ss_pred cccccccCCCCEEEEEecc-------------cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCC
Q 014040 193 HPLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNL 259 (432)
Q Consensus 193 ~~i~~~~~~~~i~~i~~g~-------------~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~ 259 (432)
..+ ......|..++... +...+++-..+| .|+.|-.... ......+..+.....
T Consensus 139 ~~~--~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg-~I~iwd~~~~----------~~~~~~~~~~~~h~~ 205 (753)
T 3jro_A 139 III--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSD----------AQTYVLESTLEGHSD 205 (753)
T ss_dssp EEE--ECCSSCEEEEEECCCC---------CGGGCCEEEEETTS-CEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred eEe--ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC-eEEEEeccCC----------cccceeeeeecCCCC
Confidence 111 12223466666544 123333333477 8888843211 111122222223344
Q ss_pred ccEEEEcCCc-----eEEEEeCCCCEEEEecCC
Q 014040 260 QPVVVAAGAW-----HAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 260 ~i~~i~~G~~-----h~~~lt~~g~vy~wG~n~ 287 (432)
.|..++.... ..+.-..+|.|+.|-...
T Consensus 206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp CEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5666665533 455557899999996543
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=75.40 E-value=53 Score=30.61 Aligned_cols=99 Identities=15% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccC
Q 014040 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEY 129 (432)
Q Consensus 52 ~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~ 129 (432)
....+++--|++||.|=... |+ ......+. -....|..|+... .+.+.-..||.|..|-......+
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g~--------~~~~~~~~-~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~-- 182 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-GD--------ILQLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL-- 182 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-CC--------EEEEEECC-STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE--
T ss_pred CCCEEEEEeCCEEEEEECCC-CC--------EEEEEEec-CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE--
Confidence 34577777789999994322 11 11111111 1122577776543 34445567888888864321110
Q ss_pred CCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEE
Q 014040 130 GVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFS 174 (432)
Q Consensus 130 ~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G 174 (432)
..+ ......+..++......+.-..++.++.|-
T Consensus 183 -----------~~~-~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 183 -----------RNM-TSHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp -----------EEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred -----------EEE-eCCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 011 112335666766666666667778887763
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=74.83 E-value=48 Score=29.81 Aligned_cols=243 Identities=12% Similarity=-0.021 Sum_probs=116.3
Q ss_pred ecccceEecCC--CeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc-cccCcCCCCcEEEEEcC----CCeEEEEecCC
Q 014040 42 RRENSQAIAGP--GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP-RPIRSLQGIRIIQAAAG----AGRTMLISDAG 114 (432)
Q Consensus 42 ~~~i~~i~~G~--~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p-~~i~~~~~~~i~~v~~g----~~~~~~lt~~g 114 (432)
...|..++.-. ...+.-..||.|..|=... ....+ ..+. .....|..++.. ....+.-..||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEG----------ETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEET----------TEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCC----------CcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 34455555433 3333334678888884321 01111 1111 122367777754 45666677889
Q ss_pred CEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc----eEEEEeCCCCEEEEEecCCCcCCCCCCCCcc
Q 014040 115 QVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF----FTAVLSREGRVYTFSWGNDARLGHHTEPNDV 190 (432)
Q Consensus 115 ~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~----~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~ 190 (432)
.|..|-..... ..+..........|..++.... ..+....+|.|..|-...... .
T Consensus 80 ~v~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~---------~ 138 (379)
T 3jrp_A 80 KVLIWKEENGR------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT---------T 138 (379)
T ss_dssp CEEEEEEETTE------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC---------C
T ss_pred EEEEEEcCCCc------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc---------e
Confidence 99999643210 0011111112345777766543 456667889999885433210 0
Q ss_pred cccccccccCCCCEEEEEecc-------------cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhcc
Q 014040 191 EPHPLLGTLENIPVVQIAAGY-------------CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLL 257 (432)
Q Consensus 191 ~p~~i~~~~~~~~i~~i~~g~-------------~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 257 (432)
.+..+ ......|..++... +...+++-..+| .|+.|-.... ......+..+...
T Consensus 139 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~----------~~~~~~~~~~~~h 205 (379)
T 3jrp_A 139 SPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-LVKIWKYNSD----------AQTYVLESTLEGH 205 (379)
T ss_dssp CEEEE--ECCTTCEEEEEECCCC----------CTTCEEEEEETTS-CEEEEEEETT----------TTEEEEEEEECCC
T ss_pred eeEEe--cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC-eEEEEEecCC----------CcceeeEEEEecc
Confidence 01111 12233466666554 233333333477 8888843211 1111122222223
Q ss_pred CCccEEEEcCC-----ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEeccc--CCCcEEEEecCC--CcEEEEec
Q 014040 258 NLQPVVVAAGA-----WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVATGD--YTTFVVSE 328 (432)
Q Consensus 258 ~~~i~~i~~G~-----~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~G~--~~s~~lt~ 328 (432)
...|..++... ...+....+|.|..|-...... .....+... ....|..++... .+.++-..
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~ 276 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---------PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 276 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---------CCEEEESSSSCCSSCEEEEEECSSSCCEEEEES
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---------cceeeeeccccCCCcEEEEEEcCCCCEEEEecC
Confidence 34566666553 3455567899999996543110 001111111 122455554433 34444567
Q ss_pred CCCEEEEeCC
Q 014040 329 DGDVYSFGCG 338 (432)
Q Consensus 329 ~g~vy~~G~n 338 (432)
+|.|+.|=.+
T Consensus 277 dg~i~iw~~~ 286 (379)
T 3jrp_A 277 DNKVTLWKEN 286 (379)
T ss_dssp SSSEEEEEEE
T ss_pred CCcEEEEeCC
Confidence 8999998654
No 67
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=73.08 E-value=72 Score=31.08 Aligned_cols=111 Identities=8% Similarity=0.068 Sum_probs=57.9
Q ss_pred CCccEEEEc--CCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecC------------CCcE
Q 014040 258 NLQPVVVAA--GAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG------------DYTT 323 (432)
Q Consensus 258 ~~~i~~i~~--G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G------------~~~s 323 (432)
...|..++. ...+.+.-..+|.|+.|-......+. .+.......|..++.. ....
T Consensus 488 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-----------~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l 556 (615)
T 1pgu_A 488 RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKT-----------SRWAFRTSKINAISWKPAEKGANEEEIEEDLV 556 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------CCSCCCSSCEEEEEECCCC------CCSCCEE
T ss_pred cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCccee-----------EeecCCCCceeEEEEcCccccccccccCCCEE
Confidence 334555555 33455666788999999754321111 1111022345555553 3344
Q ss_pred EEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEec
Q 014040 324 FVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFG 403 (432)
Q Consensus 324 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG 403 (432)
+.-..||.|+.|-..... ..+..+..-...|..++.... | .-+....||.|..|=
T Consensus 557 ~~~~~dg~i~iw~~~~~~---------------------~~~~~~~~h~~~v~~l~~s~~--~--~l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 557 ATGSLDTNIFIYSVKRPM---------------------KIIKALNAHKDGVNNLLWETP--S--TLVSSGADACIKRWN 611 (615)
T ss_dssp EEEETTSCEEEEESSCTT---------------------CCEEETTSSTTCEEEEEEEET--T--EEEEEETTSCEEEEE
T ss_pred EEEcCCCcEEEEECCCCc---------------------eechhhhcCccceEEEEEcCC--C--CeEEecCCceEEEEe
Confidence 445678999999653211 112222223346666666321 2 233446789999985
Q ss_pred C
Q 014040 404 A 404 (432)
Q Consensus 404 ~ 404 (432)
.
T Consensus 612 ~ 612 (615)
T 1pgu_A 612 V 612 (615)
T ss_dssp E
T ss_pred e
Confidence 3
No 68
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=72.85 E-value=61 Score=30.15 Aligned_cols=117 Identities=12% Similarity=0.049 Sum_probs=57.6
Q ss_pred CcEEEEEcCC--CeEEEEecCCCEEEEeCC--CCCCccCCCCCcccccCCeeeccc------CCccEEEEeec----Cce
Q 014040 95 IRIIQAAAGA--GRTMLISDAGQVYAFGKD--SFGEAEYGVQGTKLVTSPQLVESL------KNIFVVQAAIG----NFF 160 (432)
Q Consensus 95 ~~i~~v~~g~--~~~~~lt~~g~vy~~G~n--~~gqlg~~~~~~~~~~~p~~v~~~------~~~~I~~v~~G----~~~ 160 (432)
..|..|+... ...+.-..||.|..|-.. ..+++ ........+..+ ....+..+..- ...
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE-------VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSL 184 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE-------EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce-------eeccccceeEEEEccCcccccCceEEEEEEcCCCCE
Confidence 3577776543 455566778888888542 11111 000000011100 23345555422 345
Q ss_pred EEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014040 161 TAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 161 ~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
.+.-+.+|.|+.|-.... .....+........|..++...+...+++-..+| .|..|-
T Consensus 185 l~~~~~d~~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-~i~iwd 242 (437)
T 3gre_A 185 LVALTNLSRVIIFDIRTL-----------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-IIDIWD 242 (437)
T ss_dssp EEEEETTSEEEEEETTTC-----------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-CEEEEE
T ss_pred EEEEeCCCeEEEEeCCCC-----------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-eEEEEE
Confidence 555678888988843221 0011111101234588887766555555554577 888884
No 69
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=72.32 E-value=28 Score=30.80 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=12.2
Q ss_pred CcEEEEecCCCEEEEeCC
Q 014040 321 YTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 321 ~~s~~lt~~g~vy~~G~n 338 (432)
.|++++. +++||++|-.
T Consensus 246 ~~~~~~~-~~~i~v~GG~ 262 (301)
T 2vpj_A 246 YVGATVL-RGRLYAIAGY 262 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEcCc
Confidence 5666555 7899999953
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.18 E-value=90 Score=31.84 Aligned_cols=190 Identities=13% Similarity=0.024 Sum_probs=92.4
Q ss_pred cEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec--CceEEEEeCCCCEE
Q 014040 96 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G--~~~~~~lt~~G~vy 171 (432)
.|..|+... ...++-..+|.|..|-...... ...+. .....|..++.. ....++...+|.|.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-------------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-------------VRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-------------EEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 455555443 3344455678888885332110 01111 122345555443 34455667889999
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
.|-..... ....+. .....|..++...+...+++...+| .|..|-.... ....
T Consensus 81 vw~~~~~~-----------~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~-------------~~~~ 133 (814)
T 3mkq_A 81 VFNYNTGE-----------KVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENN-------------WALE 133 (814)
T ss_dssp EEETTTCC-----------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGT-------------SEEE
T ss_pred EEECCCCc-----------EEEEEe--cCCCCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCC-------------ceEE
Confidence 88543211 011111 2233577777766655555555578 8888843211 0111
Q ss_pred ehhhccCCccEEEEcCC---ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEeccc--CCCcEEEEec--CCCcEE
Q 014040 252 EQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQAL--NDVKAIHVAT--GDYTTF 324 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~G~---~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~--~~~~i~~i~~--G~~~s~ 324 (432)
..+......|..++... ...+.-..+|.|+.|-.... .....+... .......... .....+
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 11222233455555433 34555678899999964321 111122111 2223333333 334444
Q ss_pred EEecCCCEEEEeC
Q 014040 325 VVSEDGDVYSFGC 337 (432)
Q Consensus 325 ~lt~~g~vy~~G~ 337 (432)
+-..+|.|..|-.
T Consensus 203 ~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 203 TASDDLTIKIWDY 215 (814)
T ss_dssp EECTTSEEEEEET
T ss_pred EEeCCCEEEEEEC
Confidence 4567788888853
No 71
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=71.96 E-value=60 Score=29.71 Aligned_cols=249 Identities=8% Similarity=-0.012 Sum_probs=111.5
Q ss_pred CcEEEEEcCCC--eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec---CceEEEEeCCCC
Q 014040 95 IRIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG---NFFTAVLSREGR 169 (432)
Q Consensus 95 ~~i~~v~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G---~~~~~~lt~~G~ 169 (432)
..|..++.... ..+.-..||.|..|-...... + ..+..........|..++.. ....+.-..+|.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~---~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~ 137 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN---A-------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE 137 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS---C-------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc---c-------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe
Confidence 35777765433 444455788999886443100 0 00111111122345556554 344555667889
Q ss_pred EEEEEecCCCcCCCCCCCCccccccccc-ccCCCCEEEEEeccc-ceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCC
Q 014040 170 VYTFSWGNDARLGHHTEPNDVEPHPLLG-TLENIPVVQIAAGYC-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 247 (432)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~i~~-~~~~~~i~~i~~g~~-~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 247 (432)
|+.|-........ ....+..+.. ......|..++...+ ..++++...+| .|+.|-...
T Consensus 138 v~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~v~iwd~~~-------------- 197 (416)
T 2pm9_A 138 IFIWDMNKCTESP-----SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN-FASIWDLKA-------------- 197 (416)
T ss_dssp EEBCBTTTTSSCT-----TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS-CEEEEETTT--------------
T ss_pred EEEEECCCCcccc-----ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC-CEEEEECCC--------------
Confidence 9877433211000 0001111100 012234666666554 33344433477 888884321
Q ss_pred ceeeehhhcc------CCccEEEEcCCc---eEEEEeCCC---CEEEEecCCCCcccCCCCCCccCcEEecc-cCCCcEE
Q 014040 248 PRLIEQFQLL------NLQPVVVAAGAW---HAAVVGQDG---RVCTWGWGRYGCLGHGNEECESVPKVVQA-LNDVKAI 314 (432)
Q Consensus 248 p~~~~~~~~~------~~~i~~i~~G~~---h~~~lt~~g---~vy~wG~n~~gqlg~~~~~~~~~p~~i~~-~~~~~i~ 314 (432)
...+..+... ...|..++...+ ..+.-..++ .|+.|-..... .+..... .....|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~v~ 266 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----------TPLQTLNQGHQKGIL 266 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----------SCSBCCCSCCSSCEE
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----------CCcEEeecCccCcee
Confidence 1111111111 234555554432 333445555 77777543211 1111110 1122455
Q ss_pred EEec---CCCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEE
Q 014040 315 HVAT---GDYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTF 391 (432)
Q Consensus 315 ~i~~---G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~ 391 (432)
.++. .....+.-..+|.|+.|-... ...+..+......|..++.... |....+
T Consensus 267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~----------------------~~~~~~~~~~~~~v~~~~~s~~--~~~~l~ 322 (416)
T 2pm9_A 267 SLDWCHQDEHLLLSSGRDNTVLLWNPES----------------------AEQLSQFPARGNWCFKTKFAPE--APDLFA 322 (416)
T ss_dssp EEEECSSCSSCEEEEESSSEEEEECSSS----------------------CCEEEEEECSSSCCCCEEECTT--CTTEEE
T ss_pred EEEeCCCCCCeEEEEeCCCCEEEeeCCC----------------------CccceeecCCCCceEEEEECCC--CCCEEE
Confidence 5554 344555557788899985321 0112222222334555555211 223334
Q ss_pred EEeCCCCEEEecCCCCc
Q 014040 392 ALTESGKLYAFGAGDKG 408 (432)
Q Consensus 392 ~lt~~G~v~~wG~n~~g 408 (432)
.-..+|.|..|-.....
T Consensus 323 s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 323 CASFDNKIEVQTLQNLT 339 (416)
T ss_dssp ECCSSSEEEEEESCCCC
T ss_pred EEecCCcEEEEEccCCC
Confidence 44578889999766543
No 72
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=71.33 E-value=25 Score=31.23 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=12.6
Q ss_pred CCcEEEEecCCCEEEEeC
Q 014040 320 DYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 320 ~~~s~~lt~~g~vy~~G~ 337 (432)
..|++++. +++||++|-
T Consensus 192 ~~~~~~~~-~~~i~v~GG 208 (306)
T 3ii7_A 192 KNHGLVFV-KDKIFAVGG 208 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred hcceEEEE-CCEEEEEeC
Confidence 35666665 789999995
No 73
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=70.04 E-value=60 Score=28.91 Aligned_cols=68 Identities=9% Similarity=0.108 Sum_probs=37.1
Q ss_pred cEEEEeec--CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEE
Q 014040 150 FVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227 (432)
Q Consensus 150 ~I~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 227 (432)
.+..++.. ....++.+.+|.|+.|-.... ..+..... .....|..++...+...+++...+| .|+
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~-~i~ 243 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNN-----------YEYVDSID-LHEKSISDMQFSPDLTYFITSSRDT-NSF 243 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETTTT-----------TEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTS-EEE
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-----------cEeEEEEe-cCCCceeEEEECCCCCEEEEecCCc-eEE
Confidence 35555443 334555678888988843221 11111111 2334577777765555555554578 999
Q ss_pred EEc
Q 014040 228 SVG 230 (432)
Q Consensus 228 ~~G 230 (432)
.|-
T Consensus 244 v~d 246 (369)
T 3zwl_B 244 LVD 246 (369)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 74
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=69.96 E-value=65 Score=29.28 Aligned_cols=234 Identities=12% Similarity=0.011 Sum_probs=106.8
Q ss_pred EEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccC--------cCCCCcEEEEEc-CCCeEEEEecCCCEEEEeCCCCC
Q 014040 55 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIR--------SLQGIRIIQAAA-GAGRTMLISDAGQVYAFGKDSFG 125 (432)
Q Consensus 55 ~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~--------~~~~~~i~~v~~-g~~~~~~lt~~g~vy~~G~n~~g 125 (432)
++....||++.+-+++...++-.+.......+...+ ......|.+|+. .....+.-..||.|..|-.....
T Consensus 35 ~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~ 114 (344)
T 4gqb_B 35 AARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENE 114 (344)
T ss_dssp EEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTS
T ss_pred EEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCC
Confidence 456678888888777654444322111001111110 001224666664 34455556678889888543211
Q ss_pred CccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCC
Q 014040 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIP 203 (432)
Q Consensus 126 qlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~ 203 (432)
.+ ........-....|..|+...+ +.+.-..||.|..|-.... .+..... -....
T Consensus 115 ~~----------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~------------~~~~~~~-~h~~~ 171 (344)
T 4gqb_B 115 TL----------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ------------VVLSSYR-AHAAQ 171 (344)
T ss_dssp SC----------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT------------EEEEEEC-CCSSC
T ss_pred ce----------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC------------cEEEEEc-CcCCc
Confidence 10 0111111112334777665443 4444567888888842211 0111100 12345
Q ss_pred EEEEEecccc-eeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC--ceEE-EEeCCCC
Q 014040 204 VVQIAAGYCY-LLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--WHAA-VVGQDGR 279 (432)
Q Consensus 204 i~~i~~g~~~-~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~--~h~~-~lt~~g~ 279 (432)
|..++...+. .++++-..|| .|..|-.... .+............+..++... .+.+ .-..||.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~-~v~iwd~~~~------------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~ 238 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDN-RILLWDTRCP------------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT 238 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTS-CEEEEETTSS------------SCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred eEEEEecCCCCCceeeecccc-cccccccccc------------ceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence 7777765433 3444444477 8888832211 1111111111222344444332 2333 3467888
Q ss_pred EEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCC---CcEEEEecCCCEEEEe
Q 014040 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD---YTTFVVSEDGDVYSFG 336 (432)
Q Consensus 280 vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~~s~~lt~~g~vy~~G 336 (432)
|..|=.... + ....+.. ....|..|+... .+.+.-..||.|.+|-
T Consensus 239 v~~wd~~~~-~----------~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 239 VSLVDTKST-S----------CVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp EEEEESCC-------------CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred EEEEECCCC-c----------EEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 888843211 0 1112221 223566666543 2333356789999994
No 75
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=66.87 E-value=95 Score=30.02 Aligned_cols=224 Identities=14% Similarity=0.075 Sum_probs=103.8
Q ss_pred cEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec--CceEEEEeCCCCEE
Q 014040 96 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G--~~~~~~lt~~G~vy 171 (432)
.|..++... ...+....||.|..|-.+.. . ...+.. ....|..++.. ..+.+.-.++|.+.
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------~----~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------H----LQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC----------E----EEEECC-CSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------e----eEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 565555433 34444556788888753311 0 011111 12345555544 33445556778887
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
.|-.+ ++ . ...+. .....|..++...+-..+++-..++ .|+.|-.+ + ..+
T Consensus 370 ~~~~~--~~--------~--~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~-~v~~~~~~--~-------------~~~ 419 (577)
T 2ymu_A 370 LWNRN--GQ--------L--LQTLT--GHSSSVRGVAFSPDGQTIASASDDK-TVKLWNRN--G-------------QLL 419 (577)
T ss_dssp EEETT--CC--------E--EEEEE--CCSSCEEEEEECTTSSCEEEEETTS-EEEEECTT--C-------------CEE
T ss_pred EEcCC--CC--------E--EEEec--CCCCCeEEEEECCCCCEEEEEeCCC-EEEEEeCC--C-------------CEE
Confidence 77311 11 0 01111 1233477776655444444433477 89988321 1 112
Q ss_pred ehhhccCCccEEEEcCC--ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEE--Ee
Q 014040 252 EQFQLLNLQPVVVAAGA--WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFV--VS 327 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~G~--~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~--lt 327 (432)
..+......|..++... ...+.-..|+.|..|-.+ +++ ...+.. ....|..++...+..++ -.
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--~~~----------~~~~~~-~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--SCE----------EEEEEC-CSSCEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--CCE----------EEEEcC-CCCCEEEEEEcCCCCEEEEEe
Confidence 22222333455554433 344445678888888531 110 111111 12245555544333222 35
Q ss_pred cCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEec
Q 014040 328 EDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFG 403 (432)
Q Consensus 328 ~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG 403 (432)
.++.|..|-.. ++ .+..+..-...|..|+.... | ..-+.-..||.|..|=
T Consensus 487 ~d~~i~iw~~~--~~---------------------~~~~~~~h~~~v~~l~~s~d--g-~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 487 DDKTVKLWNRN--GQ---------------------LLQTLTGHSSSVRGVAFSPD--G-QTIASASDDKTVKLWN 536 (577)
T ss_dssp TTSEEEEEETT--SC---------------------EEEEEECCSSCEEEEEECTT--S-SCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCC--CC---------------------EEEEEeCCCCCEEEEEEcCC--C-CEEEEEECcCEEEEEe
Confidence 67788888521 11 11222222345777766221 1 2333446788888884
No 76
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=66.86 E-value=81 Score=29.23 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=32.1
Q ss_pred CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeeccc-CCccEEEEeecCc--eEEEEeCCCCEEEEE
Q 014040 104 AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQAAIGNF--FTAVLSREGRVYTFS 174 (432)
Q Consensus 104 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~I~~v~~G~~--~~~~lt~~G~vy~~G 174 (432)
....+.-..||.|+.|-...... ...+... ....|..++...+ ..+.-..+|.|..|-
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~-------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLER-------------LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWD 242 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCE-------------EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCee-------------eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 44556667788888886432110 0111111 2235777766433 444467889999884
No 77
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=66.57 E-value=80 Score=29.05 Aligned_cols=25 Identities=8% Similarity=-0.226 Sum_probs=15.5
Q ss_pred cEEEEeecC--ceEEEEeCCCCEEEEE
Q 014040 150 FVVQAAIGN--FFTAVLSREGRVYTFS 174 (432)
Q Consensus 150 ~I~~v~~G~--~~~~~lt~~G~vy~~G 174 (432)
.|..++... ...+.-..||.|..|-
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd 193 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWD 193 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEE
Confidence 466666543 3444456788888883
No 78
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=66.01 E-value=79 Score=28.78 Aligned_cols=226 Identities=11% Similarity=0.021 Sum_probs=113.8
Q ss_pred EEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC-----ceEEEEeCCCCEEEE
Q 014040 99 QAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN-----FFTAVLSREGRVYTF 173 (432)
Q Consensus 99 ~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~-----~~~~~lt~~G~vy~~ 173 (432)
.++....+.+++|+.|++|..-..+--..+.. ..-.+....+...++.+|+.+..-. ...+++|++|.+.-.
T Consensus 45 ~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~---a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt 121 (323)
T 1wp5_A 45 LEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK---DLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKT 121 (323)
T ss_dssp EEEETTSEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEE
T ss_pred EEECCCCEEEEEECCCEEEEEEHHHCcCCCCC---CCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEe
Confidence 34667888999999999999876542222111 1111112222323456677764433 357889999988866
Q ss_pred EecCCCcCCCCCCCCcccccccccccCCCCEEEE--EecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 174 SWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI--AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 174 G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i--~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
-...+-..... .-. ..+.. ..+..++.+ ..+.+..++++. +| .++.+-.+.-..+|+... ....
T Consensus 122 ~l~e~~~~~r~---~G~--~ai~l-~e~d~lv~~~~~~~~~~i~l~T~--~G-~~irf~~~ev~~~gR~a~-----GV~~ 187 (323)
T 1wp5_A 122 ELKHYKAQRYS---KPL--TGINL-KNDDQVVDVHLTDGMNELFLVTH--NG-YALWFDESEVSIVGVRAA-----GVKG 187 (323)
T ss_dssp EGGGGCCSCCS---SCE--ECSCC-CTTCCEEEEEEECSCSEEEEEET--TS-EEEEEEGGGSCBCCSSCC-----CEEC
T ss_pred EHHHhhhcccc---Cce--EEEEe-CCCCEEEEEEEeCCCCEEEEEeC--CC-cEEEEEHHHCcccCCCCc-----CEEE
Confidence 54443211100 000 00111 122344433 335667777786 88 998887655444443211 1122
Q ss_pred ehhhccCCccEEEEc--CCc-eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEE--EecCCCcEEEE
Q 014040 252 EQFQLLNLQPVVVAA--GAW-HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIH--VATGDYTTFVV 326 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~--G~~-h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~--i~~G~~~s~~l 326 (432)
..+. .+.+|+.+.. ... ..+++|++|...-.-..+|-..+.+... ...+...+ -.+..++. +..+....+++
T Consensus 188 i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kG-v~~~~~~~-~~~~~l~~~~~v~~~~~i~~i 264 (323)
T 1wp5_A 188 MNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRG-VVILRELK-ANPHRISGFVVAQDSDTIYLQ 264 (323)
T ss_dssp CCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCC-EECSCCCS-SSCCCEEEEEEECTTCEEEEE
T ss_pred EEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCC-EECeeecC-CCCceEEEEEEeCCCCeEEEE
Confidence 1121 2334554432 122 5777788877655554554333332211 11111111 11223332 23456778889
Q ss_pred ecCCCEEEEeCCCCCCCC
Q 014040 327 SEDGDVYSFGCGESASLG 344 (432)
Q Consensus 327 t~~g~vy~~G~n~~gqlg 344 (432)
|++|.+..+-.+.-...+
T Consensus 265 t~~g~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 265 TEKSFIETIKVGDIRFSD 282 (323)
T ss_dssp ETTSCEEEEEGGGSCBCC
T ss_pred eCCCeEEEEEhhhcCccC
Confidence 999999887655543333
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=65.28 E-value=84 Score=28.82 Aligned_cols=67 Identities=13% Similarity=0.033 Sum_probs=37.4
Q ss_pred CcEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc--eEEEEeCCCCE
Q 014040 95 IRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF--FTAVLSREGRV 170 (432)
Q Consensus 95 ~~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~--~~~~lt~~G~v 170 (432)
..|..++.. ....+.-..||.|+.|-...... ...+.. ....|..++...+ ..+.-..||.|
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-------------~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-------------PRTLIG-HRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-------------CEEEEC-CSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-------------ceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 367777654 33555566788999996542211 111211 2334666665433 44555678888
Q ss_pred EEEEe
Q 014040 171 YTFSW 175 (432)
Q Consensus 171 y~~G~ 175 (432)
..|-.
T Consensus 206 ~iwd~ 210 (420)
T 3vl1_A 206 RLWEC 210 (420)
T ss_dssp EEEET
T ss_pred EEeEC
Confidence 88853
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=65.19 E-value=81 Score=28.60 Aligned_cols=194 Identities=9% Similarity=-0.048 Sum_probs=96.7
Q ss_pred cccceEecCCC---eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCc-CCCCcEEEEEcCC---CeEEEEecCCC
Q 014040 43 RENSQAIAGPG---HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRS-LQGIRIIQAAAGA---GRTMLISDAGQ 115 (432)
Q Consensus 43 ~~i~~i~~G~~---~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~-~~~~~i~~v~~g~---~~~~~lt~~g~ 115 (432)
..|..++.-.. ..+.-..||.|..|=.... .....+.. -....|..++... ...+.-..||.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-----------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-----------TCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-----------ccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 45555554443 3444456788888843321 01111111 1233677776644 44555667899
Q ss_pred EEEEeCCCCCCccCCCCCcccccCCeeeccc--CCccEEEEeec--CceEEEEeCCCCEEEEEecCCCcCCCCCCCCccc
Q 014040 116 VYAFGKDSFGEAEYGVQGTKLVTSPQLVESL--KNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVE 191 (432)
Q Consensus 116 vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~--~~~~I~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~ 191 (432)
|..|-.... . ...+... ....|..++.. ....+.-..+|.|+.|-.. + .
T Consensus 143 i~iwd~~~~-~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~-----------~ 195 (383)
T 3ei3_B 143 TTLRDFSGS-V-------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--G-----------H 195 (383)
T ss_dssp EEEEETTSC-E-------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--S-----------C
T ss_pred EEEEECCCC-c-------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--C-----------C
Confidence 999965420 0 0011111 11235555443 3445556778888888431 1 0
Q ss_pred ccccccccCCCCEEEEEecccce-eEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC--
Q 014040 192 PHPLLGTLENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA-- 268 (432)
Q Consensus 192 p~~i~~~~~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~-- 268 (432)
+..... .....|..++...+.. ++++...+| .|+.|-..... .....+..+ .....|..++...
T Consensus 196 ~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~-~i~iwd~~~~~----------~~~~~~~~~-~~~~~v~~~~~s~~~ 262 (383)
T 3ei3_B 196 EIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDA-TVKLWDLRNIK----------DKNSYIAEM-PHEKPVNAAYFNPTD 262 (383)
T ss_dssp EEEEEE-CSSSCEEEEEECSSCTTEEEEEETTS-EEEEEEGGGCC----------STTCEEEEE-ECSSCEEEEEECTTT
T ss_pred EEEEec-cCCCcEEEEEECCCCCCEEEEEeCCC-EEEEEeCCCCC----------cccceEEEe-cCCCceEEEEEcCCC
Confidence 111111 2234577777766554 445544577 99998532210 001111111 1233566666544
Q ss_pred -ceEEEEeCCCCEEEEecCC
Q 014040 269 -WHAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 269 -~h~~~lt~~g~vy~wG~n~ 287 (432)
...+.-..+|.|+.|-...
T Consensus 263 ~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 263 STKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp SCEEEEEESSSEEEEEETTB
T ss_pred CCEEEEEcCCCcEEEEECCC
Confidence 4555667789999997543
No 81
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=65.13 E-value=73 Score=28.09 Aligned_cols=205 Identities=10% Similarity=-0.091 Sum_probs=99.8
Q ss_pred cEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec--Cc-eEEEEeCCCCE
Q 014040 96 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG--NF-FTAVLSREGRV 170 (432)
Q Consensus 96 ~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G--~~-~~~~lt~~G~v 170 (432)
.|..++.. ....+.-..||.|+.|-..... ....+.... .....|..++.. .. ..+.-..+|.|
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~----------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA----------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT----------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC----------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeE
Confidence 56666543 3345555678888888643221 000011111 123346666554 33 55666788999
Q ss_pred EEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCcee
Q 014040 171 YTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRL 250 (432)
Q Consensus 171 y~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~ 250 (432)
+.|-....++ ...+........|..++... ...+++...+| .|+.|-...... .. .......
T Consensus 82 ~~wd~~~~~~-----------~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~-~i~iwd~~~~~~---~~--~~~~~~~ 143 (342)
T 1yfq_A 82 LKVDLIGSPS-----------FQALTNNEANLGICRICKYG-DDKLIAASWDG-LIEVIDPRNYGD---GV--IAVKNLN 143 (342)
T ss_dssp EEECSSSSSS-----------EEECBSCCCCSCEEEEEEET-TTEEEEEETTS-EEEEECHHHHTT---BC--EEEEESC
T ss_pred EEEEeccCCc-----------eEeccccCCCCceEEEEeCC-CCEEEEEcCCC-eEEEEccccccc---cc--ccccCCe
Confidence 9884311111 11111100334577766654 33344444478 999994321000 00 0000001
Q ss_pred eehhhccCCccEEEEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCC---CcEEEEe
Q 014040 251 IEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD---YTTFVVS 327 (432)
Q Consensus 251 ~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~~s~~lt 327 (432)
+..+. ....|..++...+..++-+.+|.|+.|-....+. .............|..|+... ...++-.
T Consensus 144 ~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 144 SNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESGLKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred eeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence 11111 2345667777777766778899999997543111 111122222223455555542 4444557
Q ss_pred cCCCEEEEeCCC
Q 014040 328 EDGDVYSFGCGE 339 (432)
Q Consensus 328 ~~g~vy~~G~n~ 339 (432)
.+|.+..|=...
T Consensus 214 ~dg~i~i~~~~~ 225 (342)
T 1yfq_A 214 IDGRVAVEFFDD 225 (342)
T ss_dssp TTSEEEEEECCT
T ss_pred cCCcEEEEEEcC
Confidence 788888886544
No 82
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=64.72 E-value=91 Score=29.03 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=72.3
Q ss_pred eEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEcC-----CCeEEEEecCCCEEEE
Q 014040 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAF 119 (432)
Q Consensus 47 ~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~vy~~ 119 (432)
.++.+..+.+++|+.|++|-+-...--..|. ...-.| ..++...+.+|+.+..- ..+.+++|++|.+--.
T Consensus 52 ~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r---~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt 128 (370)
T 3l6v_A 52 WLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS---NARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKT 128 (370)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEE
T ss_pred EEecCCCEEEEEeCCCeEEEEEHHHCcCCCc---ccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEe
Confidence 3455667789999999999986543222221 111122 22333456788887653 3478899999988877
Q ss_pred eCCCCCCccCCCCCcccccCCeeeccc-CCccEEE--EeecCceEEEEeCCCCEEEEEecCCCcCCC
Q 014040 120 GKDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARLGH 183 (432)
Q Consensus 120 G~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~I~~--v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (432)
-..++-... . .....-.+ ++.+++. +..+.++.+++|++|++..+-...--..|.
T Consensus 129 ~l~e~~~~~--~-------~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR 186 (370)
T 3l6v_A 129 PLSEFAFRL--A-------RGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGR 186 (370)
T ss_dssp EGGGGCSCC--T-------TCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EHHHhhccc--C-------CceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCC
Confidence 655443211 0 01111111 1233443 334667899999999999886655444443
No 83
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=62.55 E-value=93 Score=28.37 Aligned_cols=153 Identities=9% Similarity=-0.066 Sum_probs=72.8
Q ss_pred cEEEEEcCC---CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccC-----CccEEEEeecCc---eEEEE
Q 014040 96 RIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLK-----NIFVVQAAIGNF---FTAVL 164 (432)
Q Consensus 96 ~i~~v~~g~---~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~-----~~~I~~v~~G~~---~~~~l 164 (432)
.|..++... ...+.-..+|.|..|-...... ...+.... ...|..++...+ ..+.-
T Consensus 167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 233 (416)
T 2pm9_A 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE-------------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA 233 (416)
T ss_dssp CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE-------------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE
T ss_pred CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc-------------ceEEeccccccccCCceEEEEECCCCCCEEEEE
Confidence 455555543 3444446788898886443110 01111110 344666666543 34444
Q ss_pred eCCC---CEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCC
Q 014040 165 SREG---RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHG 240 (432)
Q Consensus 165 t~~G---~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~ 240 (432)
..+| .|+.|-..... .+...........|..++... +..++++-..+| .|+.|-....
T Consensus 234 ~~d~~~~~i~~~d~~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg-~v~~wd~~~~------ 295 (416)
T 2pm9_A 234 TGSDNDPSILIWDLRNAN-----------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN-TVLLWNPESA------ 295 (416)
T ss_dssp ECCSSSCCCCEEETTSTT-----------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS-EEEEECSSSC------
T ss_pred ECCCCCceEEEEeCCCCC-----------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC-CEEEeeCCCC------
Confidence 5566 77777433211 111111001223477777654 333344433488 9999943211
Q ss_pred CCCCCCCceeeehhhccCCccEEEEcCC---ceEEEEeCCCCEEEEecCC
Q 014040 241 SRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGWGR 287 (432)
Q Consensus 241 ~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~g~vy~wG~n~ 287 (432)
..+..+......|..++... ...+.-..||.|..|-...
T Consensus 296 --------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 296 --------EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp --------CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred --------ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 12222222233444454443 3344446788888887543
No 84
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=62.19 E-value=81 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=15.5
Q ss_pred eEEEEeCCCCEEEEecCCCCcccC
Q 014040 270 HAAVVGQDGRVCTWGWGRYGCLGH 293 (432)
Q Consensus 270 h~~~lt~~g~vy~wG~n~~gqlg~ 293 (432)
+.+.++.+|++ .|-.+....+|.
T Consensus 245 ~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 245 QLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp SEEEECTTSBE-EEEECCTTTSCC
T ss_pred eEEEECCCCCE-EEEecCcccccc
Confidence 57778888886 566666555553
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=60.01 E-value=88 Score=27.28 Aligned_cols=122 Identities=11% Similarity=-0.014 Sum_probs=62.4
Q ss_pred cccceEec--CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC----CCeEEEEecCCCE
Q 014040 43 RENSQAIA--GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDAGQV 116 (432)
Q Consensus 43 ~~i~~i~~--G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~g~v 116 (432)
..|.+++. .....+.-..||.|..|=..... ....+..........|..++.. ....+.-..||.|
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT--------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSS--------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC--------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 34555553 33344555678889888543211 0011111111123367777764 3456666789999
Q ss_pred EEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCc----eEEEEeCCCCEEEEEecC
Q 014040 117 YAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNF----FTAVLSREGRVYTFSWGN 177 (432)
Q Consensus 117 y~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~----~~~~lt~~G~vy~~G~n~ 177 (432)
..|-........... ...+..........|..++.... ..+....+|.|+.|-...
T Consensus 84 ~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 84 KLWEEDPDQEECSGR-----RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE 143 (351)
T ss_dssp EEEEECTTSCTTSSC-----SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred EEEecCCCccccccc-----CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence 999765422110000 00111111122345777777643 456667899999885443
No 86
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=59.86 E-value=1.1e+02 Score=28.18 Aligned_cols=121 Identities=14% Similarity=-0.015 Sum_probs=56.1
Q ss_pred ccEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEE
Q 014040 149 IFVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAV 226 (432)
Q Consensus 149 ~~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~v 226 (432)
..|..++...+ ..+.-..||.|..|-................ ............|..++...+...+++-..+| .|
T Consensus 257 ~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-~v 334 (393)
T 1erj_A 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG-TCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-GV 334 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-EE
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCC-cceEEEecccCcEEEEEECCCCCEEEEEeCCC-eE
Confidence 34677766543 3444567888888854332111100000000 00001111223477777766655555555588 99
Q ss_pred EEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC--------ceEEEEeCCCCEEEEec
Q 014040 227 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA--------WHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 227 y~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~--------~h~~~lt~~g~vy~wG~ 285 (432)
+.|-.... ..+..+......|..++... ...+.-..||.|..|-.
T Consensus 335 ~iwd~~~~--------------~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 335 LFWDKKSG--------------NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEEETTTC--------------CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEEECCCC--------------eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 99943211 11222222334555665432 22333457888888853
No 87
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=58.75 E-value=93 Score=27.60 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=12.6
Q ss_pred CceEEEEeCCCCEEEEec
Q 014040 268 AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (432)
..|+++. .+++||++|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566665 6889999984
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=58.46 E-value=97 Score=27.27 Aligned_cols=204 Identities=11% Similarity=-0.059 Sum_probs=96.9
Q ss_pred cccceEecC--CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEc--CCC-eEEEEecCCCEE
Q 014040 43 RENSQAIAG--PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAA--GAG-RTMLISDAGQVY 117 (432)
Q Consensus 43 ~~i~~i~~G--~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~--g~~-~~~~lt~~g~vy 117 (432)
..|..++.. ....+.-..+|.|+.|-..... ....+..+. .....|..++. ... ..+.-..+|.|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSL-RYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEE-ECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeee-ecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 344444433 3344455578888888543210 000111111 12235555544 344 566667789999
Q ss_pred EEeCCCCCCccCCCCCcccccCCeeecc-cCCccEEEEeec-CceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccc
Q 014040 118 AFGKDSFGEAEYGVQGTKLVTSPQLVES-LKNIFVVQAAIG-NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPL 195 (432)
Q Consensus 118 ~~G~n~~gqlg~~~~~~~~~~~p~~v~~-~~~~~I~~v~~G-~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i 195 (432)
.|-.+..+++ ..+.. .....|..++.. ....+....+|.|+.|-...... .. .......+
T Consensus 83 ~wd~~~~~~~-------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~--~~~~~~~~ 144 (342)
T 1yfq_A 83 KVDLIGSPSF-------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV--IAVKNLNS 144 (342)
T ss_dssp EECSSSSSSE-------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC--EEEEESCS
T ss_pred EEEeccCCce-------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc--ccccCCee
Confidence 9854111111 11111 023346666554 45566677889999884321000 00 00000111
Q ss_pred ccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCC---ceEE
Q 014040 196 LGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGA---WHAA 272 (432)
Q Consensus 196 ~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~---~h~~ 272 (432)
........|..++...+..++... +| .|+.|-....+. ........ .....+..++... ...+
T Consensus 145 ~~~~~~~~v~~~~~~~~~l~~~~~--d~-~i~i~d~~~~~~---------~~~~~~~~--~~~~~i~~i~~~~~~~~~l~ 210 (342)
T 1yfq_A 145 NNTKVKNKIFTMDTNSSRLIVGMN--NS-QVQWFRLPLCED---------DNGTIEES--GLKYQIRDVALLPKEQEGYA 210 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEES--TT-EEEEEESSCCTT---------CCCEEEEC--SCSSCEEEEEECSGGGCEEE
T ss_pred eEEeeCCceEEEEecCCcEEEEeC--CC-eEEEEECCcccc---------ccceeeec--CCCCceeEEEECCCCCCEEE
Confidence 111123457777777766444443 77 999996432110 00111111 1223455555543 4555
Q ss_pred EEeCCCCEEEEecCC
Q 014040 273 VVGQDGRVCTWGWGR 287 (432)
Q Consensus 273 ~lt~~g~vy~wG~n~ 287 (432)
+-..+|.+..|-...
T Consensus 211 ~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 211 CSSIDGRVAVEFFDD 225 (342)
T ss_dssp EEETTSEEEEEECCT
T ss_pred EEecCCcEEEEEEcC
Confidence 667888998887644
No 89
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=57.73 E-value=1.1e+02 Score=27.69 Aligned_cols=187 Identities=9% Similarity=-0.075 Sum_probs=88.0
Q ss_pred cEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeeccc--CCccEEEEeecCce---EEEEeCCC
Q 014040 96 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL--KNIFVVQAAIGNFF---TAVLSREG 168 (432)
Q Consensus 96 ~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~--~~~~I~~v~~G~~~---~~~lt~~G 168 (432)
.|..|+... .+.+.-..||.|..|--... ..+..+ ....|..++..... .+.-..||
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~----------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~ 192 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ----------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDN 192 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT----------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTS
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCC----------------cEEEEEcCcCCceEEEEecCCCCCceeeecccc
Confidence 566665433 34444556788888853321 111112 13357777664432 23356789
Q ss_pred CEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCC
Q 014040 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 247 (432)
Q Consensus 169 ~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 247 (432)
.|..|=..... ....+........+..++... ...++++-..|| .|+.|-...
T Consensus 193 ~v~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-~v~~wd~~~-------------- 246 (344)
T 4gqb_B 193 RILLWDTRCPK-----------PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-TVSLVDTKS-------------- 246 (344)
T ss_dssp CEEEEETTSSS-----------CEEECC----CCCEEEEEECSSCTTEEEEEETTS-EEEEEESCC--------------
T ss_pred ccccccccccc-----------eeeeeecceeeccceeeeecCCCCcceEEeccCC-cEEEEECCC--------------
Confidence 99988322110 001111112233455565543 222223323377 999884221
Q ss_pred ceeeehhhccCCccEEEEcCC---ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCC-CcE
Q 014040 248 PRLIEQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD-YTT 323 (432)
Q Consensus 248 p~~~~~~~~~~~~i~~i~~G~---~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~-~~s 323 (432)
...+..+......|..++... ...+.-..||.|+.|-... +++ ..... ....|..|+... ...
T Consensus 247 ~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~-~~~-----------~~~~~-H~~~V~~v~~sp~~~~ 313 (344)
T 4gqb_B 247 TSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL-SEL-----------FRSQA-HRDFVRDATWSPLNHS 313 (344)
T ss_dssp --CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC-CEE-----------EEECC-CSSCEEEEEECSSSTT
T ss_pred CcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC-CcE-----------EEEcC-CCCCEEEEEEeCCCCe
Confidence 111222223344566666543 3344457899999994321 111 11111 123566776542 223
Q ss_pred EEE--ecCCCEEEEeC
Q 014040 324 FVV--SEDGDVYSFGC 337 (432)
Q Consensus 324 ~~l--t~~g~vy~~G~ 337 (432)
++. ..||.|..|=.
T Consensus 314 llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEEEETTSCEEEEEC
T ss_pred EEEEEcCCCeEEEEEC
Confidence 333 46899999853
No 90
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=56.84 E-value=47 Score=29.28 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=12.5
Q ss_pred CceEEEEeCCCCEEEEec
Q 014040 268 AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (432)
..|+++.. +++||++|-
T Consensus 104 ~~~~~~~~-~~~lyv~GG 120 (301)
T 2vpj_A 104 GLAGATTL-GDMIYVSGG 120 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEEcc
Confidence 45666655 789999984
No 91
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=56.43 E-value=1.8e+02 Score=29.71 Aligned_cols=199 Identities=15% Similarity=0.040 Sum_probs=97.1
Q ss_pred cEEEEEcCC--CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec----CceEEEEeCCCC
Q 014040 96 RIIQAAAGA--GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG----NFFTAVLSREGR 169 (432)
Q Consensus 96 ~i~~v~~g~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G----~~~~~~lt~~G~ 169 (432)
.|..++... ...+.-..||.|..|-.... .......+. -....|..++.. ....+.-..||.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~-----------~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-----------THKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT-----------EEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC-----------CCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 455555432 33444557888888853210 000001111 123457777764 345566778999
Q ss_pred EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEeccc--ceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCC
Q 014040 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYC--YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 247 (432)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~--~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 247 (432)
|+.|-.... ...+... .......|..++...+ ...+++-..+| .|+.|-...... ..
T Consensus 79 I~vwd~~~~----------~~~~~~~-~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~~~~~---------~~ 137 (753)
T 3jro_A 79 VLIWKEENG----------RWSQIAV-HAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFKENGT---------TS 137 (753)
T ss_dssp EEEEEEETT----------EEEEEEE-ECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECCSSSC---------CC
T ss_pred EEEEECCCC----------ccccccc-ccCCCCCeEEEEECCCCCCCEEEEEeCCC-cEEEEEeecCCC---------cc
Confidence 999954331 0001111 1123345777777654 33444444478 999995432111 01
Q ss_pred ceeeehhhccCCccEEEEcC---------------CceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCc
Q 014040 248 PRLIEQFQLLNLQPVVVAAG---------------AWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVK 312 (432)
Q Consensus 248 p~~~~~~~~~~~~i~~i~~G---------------~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 312 (432)
...+ ......|..+... ....+.-..+|.|+.|-..... ....+..........
T Consensus 138 ~~~~---~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--------~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 138 PIII---DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--------QTYVLESTLEGHSDW 206 (753)
T ss_dssp CEEE---ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT--------TEEEEEEEECCCSSC
T ss_pred eeEe---ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc--------ccceeeeeecCCCCc
Confidence 1111 1122344454443 2345556788999999543210 000111111112335
Q ss_pred EEEEecCCC-----cEEEEecCCCEEEEeCC
Q 014040 313 AIHVATGDY-----TTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 313 i~~i~~G~~-----~s~~lt~~g~vy~~G~n 338 (432)
|..++.... ..+.-..+|.|..|-..
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence 666666543 34444678999999644
No 92
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=56.36 E-value=23 Score=33.44 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=61.4
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcCCCC--------CCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCC
Q 014040 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGT--------TEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 52 ~~~~~~l~~~g~v~~~G~n~~gqlG~~~--------~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~ 123 (432)
.-..+++++...+++.|.++.-.+..-+ ......|.....+.. |.+|+. ....+++.+++.|..|--..
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v~~~~~l~v~dv~s 115 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLVSTRNALYSLDLEE 115 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEEEESSEEEEEESSS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEEEcCCcEEEEEchh
Confidence 3567777777777777766533322100 000033432223443 889988 76777777889999886544
Q ss_pred CCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEE
Q 014040 124 FGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFS 174 (432)
Q Consensus 124 ~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G 174 (432)
..+. ...... ...+.++.+-....++++++|.|+.|-
T Consensus 116 l~~~-------------~~~~~~-~~~v~~i~~~~p~~av~~~dG~L~v~d 152 (388)
T 1xip_A 116 LSEF-------------RTVTSF-EKPVFQLKNVNNTLVILNSVNDLSALD 152 (388)
T ss_dssp TTCE-------------EEEEEC-SSCEEEEEECSSEEEEEETTSEEEEEE
T ss_pred hhcc-------------Ccccee-ecceeeEEecCCCEEEEECCCCEEEEE
Confidence 3221 011111 123556666655677789999999884
No 93
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=55.67 E-value=1.3e+02 Score=27.94 Aligned_cols=228 Identities=13% Similarity=0.065 Sum_probs=113.4
Q ss_pred cEEEE--EcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeec-----CceEEEEeCCC
Q 014040 96 RIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLSREG 168 (432)
Q Consensus 96 ~i~~v--~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G-----~~~~~~lt~~G 168 (432)
.++.+ +.+..+.+++|+.|++|..--.+--..+.. ..-......+..-.+.+|+.+..- ..+.+++|++|
T Consensus 47 ~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~---a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G 123 (370)
T 3l6v_A 47 FIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN---ARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNG 123 (370)
T ss_dssp CEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT---SCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTS
T ss_pred EEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc---cCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCC
Confidence 44443 556667899999999998865432221111 111111122222346678887654 33678899999
Q ss_pred CEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEE--EecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCC
Q 014040 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI--AAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEK 246 (432)
Q Consensus 169 ~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i--~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~ 246 (432)
.+.-.-...+-... ..-.. .+.. ..+..++.+ ..+....++++. +| .+..+-...-..+|+...-..
T Consensus 124 ~vKrt~l~e~~~~~----~~G~~--ai~L-~~~d~lv~v~~~~~~~~i~l~T~--~G-~~irf~~~~v~~~gR~a~GV~- 192 (370)
T 3l6v_A 124 TVKKTPLSEFAFRL----ARGKI--AINL-DEGDALVGVALTDGDRDVLLFAS--NG-KTVRFGESTVRSMGRTATGVR- 192 (370)
T ss_dssp EEEEEEGGGGCSCC----TTCEE--SSCC-CTTCCEEEEEEECSCCEEEEEET--TS-EEEEEEGGGSCBCCTTCCCEE-
T ss_pred eEEEeEHHHhhccc----CCceE--EEEe-CCCCEEEEEEEeCCCceEEEEeC--CC-eEEEEEccccCccCCCCCCee-
Confidence 88866544442211 00000 1111 123344433 345566777776 88 888775544444443321110
Q ss_pred CceeeehhhccCCccEEEEc-------------------------------------CCceEEEEeCCCCEEEEecCCCC
Q 014040 247 HPRLIEQFQLLNLQPVVVAA-------------------------------------GAWHAAVVGQDGRVCTWGWGRYG 289 (432)
Q Consensus 247 ~p~~~~~~~~~~~~i~~i~~-------------------------------------G~~h~~~lt~~g~vy~wG~n~~g 289 (432)
.-.+. .+.+|+.+.. .....+.+|++|-.--.=..+|-
T Consensus 193 ----~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 193 ----GIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp ----CCCCC-TTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSC
T ss_pred ----eEEeC-CCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 00000 0111221111 23467888898876666666666
Q ss_pred cccCCCCCCccCcEEecccCCCcEEEE--ecCCCcEEEEecCCCEEEEeCCCCCCCCC
Q 014040 290 CLGHGNEECESVPKVVQALNDVKAIHV--ATGDYTTFVVSEDGDVYSFGCGESASLGH 345 (432)
Q Consensus 290 qlg~~~~~~~~~p~~i~~~~~~~i~~i--~~G~~~s~~lt~~g~vy~~G~n~~gqlg~ 345 (432)
..+.+....... ++.. .+-+++.+ .......+++|+.|.+.-+-.......|.
T Consensus 268 ~~~Rg~kGv~~~--k~~~-~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~i~~~gR 322 (370)
T 3l6v_A 268 RKGRGTQGVIGI--QTTE-RNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSEISRVGR 322 (370)
T ss_dssp CBCTTSCCEESS--CCCT-TTCSEEEEEEECTTCEEEEEETTCCEEEEEGGGSCBCCS
T ss_pred ccccCCcceEEE--EecC-CCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhhCCccCC
Confidence 555543211111 0110 01123322 23456788889999998887555444433
No 94
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=53.69 E-value=1.1e+02 Score=26.36 Aligned_cols=17 Identities=6% Similarity=0.134 Sum_probs=11.8
Q ss_pred cEEEEecCCCEEEEeCC
Q 014040 322 TTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 322 ~s~~lt~~g~vy~~G~n 338 (432)
..++++.+|++|+....
T Consensus 210 ~~i~~d~~G~l~v~~~~ 226 (286)
T 1q7f_A 210 IGVGINSNGEILIADNH 226 (286)
T ss_dssp EEEEECTTCCEEEEECS
T ss_pred cEEEECCCCCEEEEeCC
Confidence 45677778888887643
No 95
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=53.59 E-value=1.2e+02 Score=26.81 Aligned_cols=229 Identities=13% Similarity=0.004 Sum_probs=0.0
Q ss_pred eEEEEecCCc-EEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCC-----------CeEEEEecCCC-EEEEe
Q 014040 54 HSIAVTSKGV-VYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGA-----------GRTMLISDAGQ-VYAFG 120 (432)
Q Consensus 54 ~~~~l~~~g~-v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~-----------~~~~~lt~~g~-vy~~G 120 (432)
+.+.+..+|+ +|+....+. .-..+..-.+..+..+..+. -+.++++.+|+ +|+.+
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~------------~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 159 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNS------------AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG 159 (353)
T ss_dssp CSEEEETTTTEEEEEETTTT------------EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE
T ss_pred ceEEECCCCCEEEEEecCCC------------EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe
Q ss_pred CCCCCCccCCCCCcccccCCeeec-ccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014040 121 KDSFGEAEYGVQGTKLVTSPQLVE-SLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (432)
Q Consensus 121 ~n~~gqlg~~~~~~~~~~~p~~v~-~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 199 (432)
....+.+-.-+ .........++ .-....-..++......++.+.+++|+.| ................-
T Consensus 160 ~~~~~~i~~~d--~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~---------d~~~~~~~~~~~~~~~~ 228 (353)
T 3vgz_A 160 IGKESVIWVVD--GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITI---------DTADNKILSRKKLLDDG 228 (353)
T ss_dssp ESSSCEEEEEE--TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEE---------ETTTTEEEEEEECCCSS
T ss_pred cCCCceEEEEc--CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEE---------ECCCCeEEEEEEcCCCC
Q ss_pred CCCCEEEEEecccce-eEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCC
Q 014040 200 ENIPVVQIAAGYCYL-LALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDG 278 (432)
Q Consensus 200 ~~~~i~~i~~g~~~~-~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g 278 (432)
....+..++...+.. ++++...++ .|+.| -......+..+..+....++++.+|
T Consensus 229 ~~~~~~~~~~s~dg~~l~~~~~~~~-~v~~~------------------------d~~~~~~~~~~~~~~~~~~~~s~dg 283 (353)
T 3vgz_A 229 KEHFFINISLDTARQRAFITDSKAA-EVLVV------------------------DTRNGNILAKVAAPESLAVLFNPAR 283 (353)
T ss_dssp SCCCEEEEEEETTTTEEEEEESSSS-EEEEE------------------------ETTTCCEEEEEECSSCCCEEEETTT
T ss_pred CCcccceEEECCCCCEEEEEeCCCC-EEEEE------------------------ECCCCcEEEEEEcCCCceEEECCCC
Q ss_pred C-EEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCC-cEEEEecCCC-EEEEeCCCCCC
Q 014040 279 R-VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDY-TTFVVSEDGD-VYSFGCGESAS 342 (432)
Q Consensus 279 ~-vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~-~s~~lt~~g~-vy~~G~n~~gq 342 (432)
+ +|+..... ..-..+.......+..+..+.. +.++++.+|+ +|+-.......
T Consensus 284 ~~l~v~~~~~------------~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~~ 338 (353)
T 3vgz_A 284 NEAYVTHRQA------------GKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQKSTK 338 (353)
T ss_dssp TEEEEEETTT------------TEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEECCCBT
T ss_pred CEEEEEECCC------------CeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcccccc
No 96
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=53.55 E-value=1.5e+02 Score=27.82 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=38.1
Q ss_pred EEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014040 151 VVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 151 I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
|.+|++ ++..+++.++|.|..|--....+.. .+. .....+.++.+-....++++. +| .|+.|-
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-----------~~~--~~~~~v~~i~~~~p~~av~~~--dG-~L~v~d 152 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-----------TVT--SFEKPVFQLKNVNNTLVILNS--VN-DLSALD 152 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-----------EEE--ECSSCEEEEEECSSEEEEEET--TS-EEEEEE
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-----------ccc--eeecceeeEEecCCCEEEEEC--CC-CEEEEE
Confidence 899999 7778888888988888533322100 010 111235565555544555555 88 999993
No 97
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=53.14 E-value=1.2e+02 Score=26.89 Aligned_cols=209 Identities=8% Similarity=-0.109 Sum_probs=94.2
Q ss_pred ccEEEEeec--CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEE
Q 014040 149 IFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAV 226 (432)
Q Consensus 149 ~~I~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~v 226 (432)
..|..++.. ....+....+|.|..|-.... ...+. .........|..++...+...+++-..+| .|
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v 120 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR----------TWKPT-LVILRINRAARCVRWAPNEKKFAVGSGSR-VI 120 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEETT----------EEEEE-EECCCCSSCEEEEEECTTSSEEEEEETTS-SE
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECCCC----------eeeee-EEeecCCCceeEEEECCCCCEEEEEeCCC-EE
Confidence 346666654 334455667888888854221 00011 11112233476776654444444433467 77
Q ss_pred EEEccCCCCCcCCCCCCCCCCceeeeh-hhccCCccEEEEcC--CceEEEEeCCCCEEEEecCCCCcccCCC----CCCc
Q 014040 227 YSVGCGLGGKLGHGSRTDEKHPRLIEQ-FQLLNLQPVVVAAG--AWHAAVVGQDGRVCTWGWGRYGCLGHGN----EECE 299 (432)
Q Consensus 227 y~~G~n~~gqlg~~~~~~~~~p~~~~~-~~~~~~~i~~i~~G--~~h~~~lt~~g~vy~wG~n~~gqlg~~~----~~~~ 299 (432)
+.|-..... ....... .......|..++.. ....+.-..+|.|+.|-......-.... ....
T Consensus 121 ~i~d~~~~~-----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~ 189 (372)
T 1k8k_C 121 SICYFEQEN-----------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 189 (372)
T ss_dssp EEEEEETTT-----------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCC
T ss_pred EEEEecCCC-----------cceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccccccccccc
Confidence 777322111 0000111 11123345555543 3345555789999999743211000000 0000
Q ss_pred cCcEEeccc--CCCcEEEEecCC--CcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceE
Q 014040 300 SVPKVVQAL--NDVKAIHVATGD--YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERV 375 (432)
Q Consensus 300 ~~p~~i~~~--~~~~i~~i~~G~--~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i 375 (432)
.....+..+ ....|..++... .+.+.-..+|.|..|-... ...+..+......|
T Consensus 190 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------------------~~~~~~~~~~~~~v 247 (372)
T 1k8k_C 190 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----------------------KMAVATLASETLPL 247 (372)
T ss_dssp CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----------------------TTEEEEEECSSCCE
T ss_pred chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC----------------------CceeEEEccCCCCe
Confidence 011122212 122455555433 3444446677777775321 11222222223456
Q ss_pred EEEeeeccccccceEEEEeCCCCEEEecCCC
Q 014040 376 VQISLTNSIYWNAHTFALTESGKLYAFGAGD 406 (432)
Q Consensus 376 ~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~ 406 (432)
..++.. -+...++...+|.++.|-...
T Consensus 248 ~~~~~~----~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 248 LAVTFI----TESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEE----ETTEEEEEETTSSCEEEEEET
T ss_pred EEEEEe----cCCCEEEEEeCCeEEEEEccC
Confidence 666652 123455566888888886544
No 98
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=53.12 E-value=1.3e+02 Score=27.11 Aligned_cols=262 Identities=12% Similarity=0.089 Sum_probs=130.1
Q ss_pred CeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEE--EEcCCCeEEEEecCCCEEEEeCCCCCCccCC
Q 014040 53 GHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQ--AAAGAGRTMLISDAGQVYAFGKDSFGEAEYG 130 (432)
Q Consensus 53 ~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~--v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~ 130 (432)
...+++|.+|.+--.=...+.....+. .-...+..-.+..++. ++.+..+.+++|+.|++|..--.+--..+..
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~----~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGG----KGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSC----CCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCC----CCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 457788999987655322221111000 0011122123334444 4557778999999999998865432111111
Q ss_pred CCCcccccCCeeecccCCccEEEEeec-----CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEE
Q 014040 131 VQGTKLVTSPQLVESLKNIFVVQAAIG-----NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVV 205 (432)
Q Consensus 131 ~~~~~~~~~p~~v~~~~~~~I~~v~~G-----~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~ 205 (432)
..-......+....+.+|+.+... ..+.+++|++|.++-.-...+-... . ..........+..++
T Consensus 85 ---~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-~------~G~~~i~L~~~d~lv 154 (312)
T 1suu_A 85 ---SKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-S------RGVIVIKLNDKDFVT 154 (312)
T ss_dssp ------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----------CEECBCCCTTCCEE
T ss_pred ---CCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-C------CcEEEEecCCCCEEE
Confidence 111112223333346677777654 3468889999999977655431110 0 000111112344565
Q ss_pred EEEe--cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEc--CCceEEEEeCCCCEE
Q 014040 206 QIAA--GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAVVGQDGRVC 281 (432)
Q Consensus 206 ~i~~--g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~lt~~g~vy 281 (432)
.+.. +....+++++ +| .+..+-..+...+|+...- ...-.+. .+.+++.+.. ...+.++++++|.+.
T Consensus 155 ~~~~~~~~~~i~l~T~--~G-~~~r~~~~ev~~~gR~~~G-----v~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 155 SAEIVFKDEKVICLSK--KG-SAFIFNSRDVRLTNRGTQG-----VCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp EEEEECTTCEEEEEET--TS-EEEEEEGGGSCBCCTTBCC-----EECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred EEEEeCCCCEEEEEeC--CC-cEEEEEHHHccccCCCCCC-----eEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceE
Confidence 5444 3455667776 88 8887765544333332111 1111111 1334554432 345688899999988
Q ss_pred EEecCCCCcccCCCCCCccCcEEecccCCCcEEE--EecCCCcEEEEecCCCEEEEeCCC
Q 014040 282 TWGWGRYGCLGHGNEECESVPKVVQALNDVKAIH--VATGDYTTFVVSEDGDVYSFGCGE 339 (432)
Q Consensus 282 ~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~--i~~G~~~s~~lt~~g~vy~~G~n~ 339 (432)
..-.+++-..+.+...... .. +....+..++. ........+++|++|.+.-.-.+.
T Consensus 226 r~~~~e~~~~~R~~kGv~~-~~-~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 226 RLNMSKISELKRGATGYTS-YK-KSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp EEEGGGSCBCCTTCCCEEC-SC-TTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred EEEHHHhcccCCCCCCEEe-eE-ccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 8887777666654321110 00 00011123332 223555667778888776654433
No 99
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=51.71 E-value=1.3e+02 Score=26.91 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=115.5
Q ss_pred EecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEc-----CCCeEEEEecCCCEEEEe
Q 014040 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAA-----GAGRTMLISDAGQVYAFG 120 (432)
Q Consensus 48 i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~-----g~~~~~~lt~~g~vy~~G 120 (432)
++....+.+++|+.|++|-+-..+--..+. ...-.| ..++..++.+|+.+.. ...+.+++|++|.+--.-
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~---~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~ 125 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATR---GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTV 125 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCS---SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCC---CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEE
Confidence 556778899999999999997654322222 122223 3334445667887754 233578889999888765
Q ss_pred CCCCCCccCCCCCcccccCCeeeccc-CCccEEEE--eecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccc
Q 014040 121 KDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (432)
Q Consensus 121 ~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~I~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~ 197 (432)
..++-... ......-.+ ++..++.+ ..+.++.+++|++|+++.+-...--..|...... ..+..
T Consensus 126 l~e~~~~~---------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv----~~i~L 192 (307)
T 1zi0_A 126 LTEFNRLR---------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGV----RGIRL 192 (307)
T ss_dssp GGGGTTCC---------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCE----ECCCC
T ss_pred HHHhhccc---------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCe----EeEEe
Confidence 44332110 011111111 23344443 3466788999999999988666544444322211 11111
Q ss_pred ccCCCCEEEEEecc--cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEc--CCceEEE
Q 014040 198 TLENIPVVQIAAGY--CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAA--GAWHAAV 273 (432)
Q Consensus 198 ~~~~~~i~~i~~g~--~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~--G~~h~~~ 273 (432)
..+..|+.+..-. ...+.+++ +| .+--.--..+-.-+++.. -.....+.....+++.+.. .....++
T Consensus 193 -~~~d~Vv~~~~~~~~~~ll~~T~--~G-~~Kr~~~~e~~~~~Rg~k-----G~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 193 -GEGDKVVSLIVPRGDGAILTATQ--NG-YGKRTAVAEYPTKSRATK-----GVISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp -CTTCCEEEEECCCSSCEEEEEET--TS-EEEEECGGGSCCCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred -CCCCEEEEEEEecCCCEEEEEEc--CC-ceEEEEHHHhccCCCCCC-----CEEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 3456677765432 23455554 66 544432222221111111 1111111112224444333 5567889
Q ss_pred EeCCCCEEEEecCCCCccc
Q 014040 274 VGQDGRVCTWGWGRYGCLG 292 (432)
Q Consensus 274 lt~~g~vy~wG~n~~gqlg 292 (432)
+|++|.+.-+-.++....|
T Consensus 264 ~t~~g~~ir~~~~~i~~~~ 282 (307)
T 1zi0_A 264 ITDAGTLVRTRVSEISIVG 282 (307)
T ss_dssp EESSCCEEEEEGGGSCBCC
T ss_pred EcCCCcEEEEecccccccC
Confidence 9999999887765554444
No 100
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=50.45 E-value=1.4e+02 Score=26.56 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=72.8
Q ss_pred CCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCc--eEEEEeCCCC
Q 014040 202 IPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGR 279 (432)
Q Consensus 202 ~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~ 279 (432)
..|..++...+...+++-..+| .|+.|-... ...+..+......|..++...+ ..+.-..||.
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg-~i~iwd~~~--------------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~ 229 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDG-IINIFDIAT--------------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-CEEEEETTT--------------TEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC
T ss_pred ceEEEEEECCCCCEEEEEcCCC-eEEEEECCC--------------CcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe
Confidence 3466666655544444444477 888884221 1222222223334555554433 3444467888
Q ss_pred EEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecC--CCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCccc
Q 014040 280 VCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHA 357 (432)
Q Consensus 280 vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G--~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~ 357 (432)
|..|-...... ...+.. ....|..++.. ..+.+.-..||.|..|-...
T Consensus 230 i~iwd~~~~~~-----------~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~------------------ 279 (321)
T 3ow8_A 230 IKIYDVQHANL-----------AGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT------------------ 279 (321)
T ss_dssp EEEEETTTCCE-----------EEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTT------------------
T ss_pred EEEEECCCcce-----------eEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC------------------
Confidence 88885432110 111111 12235555543 23344446678888885321
Q ss_pred ccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEEEec
Q 014040 358 NVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLYAFG 403 (432)
Q Consensus 358 ~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG 403 (432)
...+..+..-...|..|+... .....+....||.|..|-
T Consensus 280 ----~~~~~~~~~h~~~v~~v~~s~---~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 280 ----RTCVHTFFDHQDQVWGVKYNG---NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ----TEEEEEECCCSSCEEEEEECT---TSSEEEEEETTCCEEEEE
T ss_pred ----CEEEEEEcCCCCcEEEEEECC---CCCEEEEEeCCCeEEEEe
Confidence 122333322344666776621 112344456788888884
No 101
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=49.76 E-value=1.3e+02 Score=26.08 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=11.2
Q ss_pred eEEEEeCCCCEEEEe
Q 014040 270 HAAVVGQDGRVCTWG 284 (432)
Q Consensus 270 h~~~lt~~g~vy~wG 284 (432)
..++++.+|+||+..
T Consensus 221 ~~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA 235 (296)
T ss_dssp CSEEEBTTSCEEEEE
T ss_pred CeEEECCCCCEEEEc
Confidence 356778888888766
No 102
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=49.67 E-value=1.8e+02 Score=27.88 Aligned_cols=144 Identities=17% Similarity=0.059 Sum_probs=69.9
Q ss_pred cEEEEeecCc--eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEE
Q 014040 150 FVVQAAIGNF--FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVY 227 (432)
Q Consensus 150 ~I~~v~~G~~--~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy 227 (432)
.|..++...+ ..+.-..++.|..|- ..++ . ...+. .....|..++...+...+++...++ .|+
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~--~~~~--------~--~~~~~--~~~~~v~~~~~s~d~~~l~~~~~d~-~v~ 451 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWN--RNGQ--------L--LQTLT--GHSSSVWGVAFSPDDQTIASASDDK-TVK 451 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEEC--TTCC--------E--EEEEE--CCSSCEEEEEECTTSSEEEEEETTS-EEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEe--CCCC--------E--EEEec--CCCCCeEEEEECCCCCEEEEEcCCC-EEE
Confidence 4666655433 344456788888772 1111 0 01111 2233477776655544444444577 888
Q ss_pred EEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCc--eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEe
Q 014040 228 SVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVV 305 (432)
Q Consensus 228 ~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i 305 (432)
.|-.+ + ..+..+......|..++...+ ..+.-..|+.|+.|-.+ +++ ...+
T Consensus 452 ~w~~~--~-------------~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~--~~~----------~~~~ 504 (577)
T 2ymu_A 452 LWNRN--G-------------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTL 504 (577)
T ss_dssp EEETT--S-------------CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT--SCE----------EEEE
T ss_pred EEECC--C-------------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEE
Confidence 88321 1 112222223345555555443 33334678888888531 111 1111
Q ss_pred cccCCCcEEEEecCC--CcEEEEecCCCEEEEe
Q 014040 306 QALNDVKAIHVATGD--YTTFVVSEDGDVYSFG 336 (432)
Q Consensus 306 ~~~~~~~i~~i~~G~--~~s~~lt~~g~vy~~G 336 (432)
.. ....|..|+... .+-+.-..||.|+.|=
T Consensus 505 ~~-h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 505 TG-HSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EC-CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eC-CCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 11 223466655443 3334446678888883
No 103
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=49.51 E-value=90 Score=24.21 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=54.1
Q ss_pred eEecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEE-cCCCeEEEEecCCCEEEEeCCCCC
Q 014040 47 QAIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAA-AGAGRTMLISDAGQVYAFGKDSFG 125 (432)
Q Consensus 47 ~i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~-~g~~~~~~lt~~g~vy~~G~n~~g 125 (432)
--.|...+.+-+..||+|-.-....+ .........+. . .++.|. .-..+.+.+..+|+||..-...
T Consensus 10 ~~~~~~g~~L~I~~dG~V~Gt~~~~~-------~~s~l~~~~v~--~--G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s-- 76 (132)
T 3q7x_A 10 LRSTETGQFLRINPDGTVDGTRDRSD-------PGIQFQISPEG--N--GEVLLRSTETGQFLRINPDGTVDGTRDRS-- 76 (132)
T ss_dssp EEETTTCCEEEECTTSBEEEECCTTC-------GGGCEEEEEEE--T--TEEEEEETTTCCEEEECTTSBEEEECC-C--
T ss_pred eeeccCcEEEEECCCCcEEeecCCCC-------CCcEEEEEecc--c--CEEEEEEEcccEEEEECCCCCEeeccCCC--
Confidence 34567777888899999987653211 11122222221 1 244443 3455678889999999753211
Q ss_pred CccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEE
Q 014040 126 EAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVY 171 (432)
Q Consensus 126 qlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy 171 (432)
.+....-..........|+.+..|. .++++++|++|
T Consensus 77 --------~ec~flE~~~~~~g~v~ikg~~sg~--YLamnk~G~ly 112 (132)
T 3q7x_A 77 --------DPGIQFQISPEGNGEVLLRSTETGQ--FLRINPDGTVD 112 (132)
T ss_dssp --------CGGGCEEEEEEETTEEEEEETTTCC--EEEECTTSBEE
T ss_pred --------CCceeEEEEeecCcEEEEEeccCCe--EEEECCCCcCc
Confidence 1111111111111222344444454 78899999999
No 104
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=48.24 E-value=59 Score=28.84 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=12.8
Q ss_pred CCcEEEEecCCCEEEEeCC
Q 014040 320 DYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 320 ~~~s~~lt~~g~vy~~G~n 338 (432)
..|++++. +++||++|-.
T Consensus 207 ~~~~~~~~-~~~iyv~GG~ 224 (308)
T 1zgk_A 207 SGAGVCVL-HNCIYAAGGY 224 (308)
T ss_dssp BSCEEEEE-TTEEEEECCB
T ss_pred ccceEEEE-CCEEEEEeCC
Confidence 35666655 7899999943
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=46.96 E-value=1.8e+02 Score=26.86 Aligned_cols=102 Identities=8% Similarity=-0.065 Sum_probs=54.2
Q ss_pred CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCc
Q 014040 158 NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKL 237 (432)
Q Consensus 158 ~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gql 237 (432)
....+++--|+.||.|-... | .. ...+........|..|+-..+...+++-..+| .|..|-...
T Consensus 115 ~~n~lAvgld~tV~lWd~~t-g--------~~--~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg-~v~iWd~~~---- 178 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASS-G--------DI--LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA-EVQLWDVQQ---- 178 (420)
T ss_dssp TTSEEEEEETTEEEEEETTT-C--------CE--EEEEECCSTTCCEEEEEECTTSSEEEEEETTS-CEEEEETTT----
T ss_pred CCCEEEEEeCCEEEEEECCC-C--------CE--EEEEEecCCCCcEEEEEECCCCCEEEEEECCC-eEEEEEcCC----
Confidence 44567776789999993221 1 00 01111112233578887766555555544578 888884321
Q ss_pred CCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCEEEEec
Q 014040 238 GHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 238 g~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~vy~wG~ 285 (432)
...+..+......+..++......+.-..++.++.|-.
T Consensus 179 ----------~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 179 ----------QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp ----------TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred ----------CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 12222233334455566655555555567777777753
No 106
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=44.91 E-value=1.6e+02 Score=25.70 Aligned_cols=122 Identities=14% Similarity=0.172 Sum_probs=71.1
Q ss_pred EecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEcC--CCeEEEEecCCCEEEEeCCC
Q 014040 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 48 i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~~G~n~ 123 (432)
.+....+.+++|+.|++|-+-..+- - .....-.| ..++...+.+|+.+... ..+.+++|++|.+.-.-..+
T Consensus 40 ~~~t~~~ll~~T~~Gr~~~~~~~el---p--~~r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e 114 (256)
T 1zvt_A 40 KGKSNQPVVFVDSTGRSYAIDPITL---P--SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 114 (256)
T ss_dssp EEETTSCEEEEETTSEEEEECGGGS---C--CSSSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHC---C--CcCCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHH
Confidence 4446778999999999999976542 1 11111122 23444456788888763 44578899999888776554
Q ss_pred CCCccCCCCCcccccCCeeeccc-CCccEEEE--e-ecCceEEEEeCCCCEEEEEecCCCcCCC
Q 014040 124 FGEAEYGVQGTKLVTSPQLVESL-KNIFVVQA--A-IGNFFTAVLSREGRVYTFSWGNDARLGH 183 (432)
Q Consensus 124 ~gqlg~~~~~~~~~~~p~~v~~~-~~~~I~~v--~-~G~~~~~~lt~~G~vy~~G~n~~gqlg~ 183 (432)
+-.... .-..+-.+ ++..++.+ . .+.++.+++|++|.+.-+-.+..-.+|.
T Consensus 115 ~~~~~r---------~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 115 LVARNR---------AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GCCCST---------TCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred hcccCc---------CceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
Confidence 411100 00111111 12233322 2 3667899999999999887666444444
No 107
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=44.58 E-value=1.5e+02 Score=25.33 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=13.1
Q ss_pred CCcEEEEecCCCEEEEeC
Q 014040 320 DYTTFVVSEDGDVYSFGC 337 (432)
Q Consensus 320 ~~~s~~lt~~g~vy~~G~ 337 (432)
.-+.++++.+|++|+-..
T Consensus 273 ~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 273 EPHGITFGKDGSVWFALK 290 (300)
T ss_dssp CCCCEEECTTSCEEEECS
T ss_pred ccceeEeCCCCCEEEEcc
Confidence 346678888899887653
No 108
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=42.52 E-value=1.7e+02 Score=25.44 Aligned_cols=169 Identities=12% Similarity=0.027 Sum_probs=77.5
Q ss_pred cCCccEEEEeec-CceEEEEeCCCC-EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCC
Q 014040 146 LKNIFVVQAAIG-NFFTAVLSREGR-VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSG 223 (432)
Q Consensus 146 ~~~~~I~~v~~G-~~~~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G 223 (432)
+.+.++.-..++ ....++++.+|+ ++.++.... . ......|..+.. ..+-.+.-.........++.. +|
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~-~~~G~~lv~~~~~~~v~~~d~--~G 155 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINK-NKKGNYLVPLFATSEVREIAP--NG 155 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEE-CTTSCEEEEETTTTEEEEECT--TS
T ss_pred CCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceE-CCCCCEEEEecCCCEEEEECC--CC
Confidence 344455555555 555666788887 455543211 0 000111222222 223334423333344444444 57
Q ss_pred CEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCc-eEEEEeCC-CC-EEEEecCCCCcccCCCCCCcc
Q 014040 224 MAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW-HAAVVGQD-GR-VCTWGWGRYGCLGHGNEECES 300 (432)
Q Consensus 224 ~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~-h~~~lt~~-g~-vy~wG~n~~gqlg~~~~~~~~ 300 (432)
..+|.++... .|...... .+-.+. |+...+ ..++++.+ |+ +|.++.+... .....
T Consensus 156 ~~~w~~~~~~-------------~~~~~~~~--~~g~~~-v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~ 213 (276)
T 3no2_A 156 QLLNSVKLSG-------------TPFSSAFL--DNGDCL-VACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLF 213 (276)
T ss_dssp CEEEEEECSS-------------CCCEEEEC--TTSCEE-EECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCS
T ss_pred CEEEEEECCC-------------CccceeEc--CCCCEE-EEeCCCCeEEEEeCcCCcEEEEecCCCCC------Ccccc
Confidence 6778776420 12222221 122333 333333 46677777 76 4555533210 00112
Q ss_pred CcEEecccCCCcEEEEec--C---------CCcEEEEecCCCEEEEeCCCCCCCCCCC
Q 014040 301 VPKVVQALNDVKAIHVAT--G---------DYTTFVVSEDGDVYSFGCGESASLGHNA 347 (432)
Q Consensus 301 ~p~~i~~~~~~~i~~i~~--G---------~~~s~~lt~~g~vy~~G~n~~gqlg~~~ 347 (432)
.|.-+..+.+-.+. |+. | ....+.++.+|++ +|=.+....+|..+
T Consensus 214 ~~~~~~~~~~G~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~~~ 269 (276)
T 3no2_A 214 FVAQLFPLQNGGLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGMIS 269 (276)
T ss_dssp EEEEEEECTTSCEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCCCC
T ss_pred ccccceEcCCCCEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCccccccee
Confidence 34444444443433 444 2 2357788888886 66666666665543
No 109
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=42.49 E-value=1.7e+02 Score=25.50 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=12.3
Q ss_pred CceEEEEeCCCCEEEEec
Q 014040 268 AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (432)
..|++++. +++||++|-
T Consensus 93 ~~~~~~~~-~~~iyv~GG 109 (306)
T 3ii7_A 93 DSLAACAA-EGKIYTSGG 109 (306)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred cceeEEEE-CCEEEEECC
Confidence 45666654 789999985
No 110
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=41.73 E-value=1.3e+02 Score=23.73 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCCCEEEEEecc-cceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcC-CceEEEEeCC
Q 014040 200 ENIPVVQIAAGY-CYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAG-AWHAAVVGQD 277 (432)
Q Consensus 200 ~~~~i~~i~~g~-~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G-~~h~~~lt~~ 277 (432)
......++-|-. .+-+-+.. || .|-.-... .+...-..+.. ....++.|.|- ..+-+++..+
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~--dG-~V~Gt~~~----------~~~~s~lei~s---v~~G~V~L~g~~sg~yL~mn~~ 91 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINP--DG-TVDGTRDR----------SDTHIQFQISP---EGNGEVLLKSTETGQYLRINPD 91 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECT--TS-BEEEECCT----------TCGGGCEEEEE---EETTEEEEEETTTTEEEEECTT
T ss_pred ccCcEEEEEEeCCCEEEEECC--CC-CEeeecCC----------CCCceEEEEEE---ccCCEEEEEEecCCEEEeECCC
Confidence 344577777765 34444443 77 77654221 11111112221 23357788875 5678899999
Q ss_pred CCEEEEecCCCCcccCCCCCCccCcEEecccCC--CcEEEEecCCCcEEEEecCCCEEE
Q 014040 278 GRVCTWGWGRYGCLGHGNEECESVPKVVQALND--VKAIHVATGDYTTFVVSEDGDVYS 334 (432)
Q Consensus 278 g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~--~~i~~i~~G~~~s~~lt~~g~vy~ 334 (432)
|+||+.-. . .......++..... ..|..+..| ..+|++++|++|.
T Consensus 92 G~l~Gs~~--~--------t~ecsflEi~~en~y~v~i~g~~sg--~YLamnk~Grlyg 138 (142)
T 3p6j_A 92 GTVDGTRD--R--------SDTHIQFQISPEGNGEVLLKSTETG--QYLRINPDGTVDG 138 (142)
T ss_dssp SBEEEECC--T--------TCGGGCEEEEECSTTCEEEEETTTC--CEEEECTTSBEEE
T ss_pred CCEeeccc--C--------CCCceEEEEEeecCcEEEEEEecCC--EEEEECCCcCCcc
Confidence 99996422 1 11233333332222 233334444 4899999999996
No 111
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=41.38 E-value=1.3e+02 Score=23.70 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=43.3
Q ss_pred cCCccEEEEcCC-ceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecC-CCcEEEEecCCCEEE
Q 014040 257 LNLQPVVVAAGA-WHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATG-DYTTFVVSEDGDVYS 334 (432)
Q Consensus 257 ~~~~i~~i~~G~-~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G-~~~s~~lt~~g~vy~ 334 (432)
......++.|-. .+-+-+..||+|-+..... . ...--.+... ...++.|.|- ..+-+++..+|+||+
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~---------~-~~s~lei~sv-~~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRS---------D-THIQFQISPE-GNGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTT---------C-GGGCEEEEEE-ETTEEEEEETTTTEEEEECTTSBEEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCC---------C-CceEEEEEEc-cCCEEEEEEecCCEEEeECCCCCEee
Confidence 455778999976 5677888999998664321 1 1111122211 1246777765 577888999999996
Q ss_pred E
Q 014040 335 F 335 (432)
Q Consensus 335 ~ 335 (432)
-
T Consensus 97 s 97 (142)
T 3p6j_A 97 T 97 (142)
T ss_dssp E
T ss_pred c
Confidence 3
No 112
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=41.06 E-value=3.7e+02 Score=28.96 Aligned_cols=107 Identities=10% Similarity=-0.035 Sum_probs=54.5
Q ss_pred cEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecC--ce--EEEEeCCCC
Q 014040 96 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGN--FF--TAVLSREGR 169 (432)
Q Consensus 96 ~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~--~~--~~~lt~~G~ 169 (432)
.|..++.. ....+.-..||.|..|-...... ...+. .....|..++... +. .+.-..+|.
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-------------~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-------------VHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-------------EEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-------------EEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 56666554 33455556788888886442110 00111 1233466666544 32 333467888
Q ss_pred EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014040 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
|..|-..... ....+. .....|..++...+...+++-..+| .|..|-
T Consensus 725 v~vwd~~~~~-----------~~~~~~--~h~~~v~~~~~sp~~~~l~s~s~dg-~v~vwd 771 (1249)
T 3sfz_A 725 LKLWDLNQKE-----------CRNTMF--GHTNSVNHCRFSPDDELLASCSADG-TLRLWD 771 (1249)
T ss_dssp EEEEETTSSS-----------EEEEEC--CCSSCEEEEEECSSTTEEEEEESSS-EEEEEE
T ss_pred EEEEECCCcc-----------hhheec--CCCCCEEEEEEecCCCEEEEEECCC-eEEEEe
Confidence 9988433210 000111 1223477676665554555544578 888884
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=40.25 E-value=2.2e+02 Score=26.03 Aligned_cols=26 Identities=8% Similarity=-0.032 Sum_probs=12.8
Q ss_pred EEEEEecccc-eeEEEeeCCCCEEEEEc
Q 014040 204 VVQIAAGYCY-LLALACQPSGMAVYSVG 230 (432)
Q Consensus 204 i~~i~~g~~~-~~~l~~~~~G~~vy~~G 230 (432)
+..++...+. .++++...++ .|+.|-
T Consensus 305 ~~~~~~~~~g~~l~~~~~~~~-~v~v~d 331 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMCCS-KIEVYD 331 (433)
T ss_dssp EEEEEECSSTTEEEEEETTTT-EEEEEE
T ss_pred cceEEECCCCCEEEEEecCCC-EEEEEE
Confidence 4445544333 3444433355 777773
No 114
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=39.52 E-value=2.2e+02 Score=25.78 Aligned_cols=224 Identities=13% Similarity=0.006 Sum_probs=115.9
Q ss_pred EecCCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccc--cccCcCCCCcEEEEEcC-----CCeEEEEecCCCEEEEe
Q 014040 48 AIAGPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRP--RPIRSLQGIRIIQAAAG-----AGRTMLISDAGQVYAFG 120 (432)
Q Consensus 48 i~~G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p--~~i~~~~~~~i~~v~~g-----~~~~~~lt~~g~vy~~G 120 (432)
++....+.+++|+.|++|-+-..+--..+. ...-.| ..++..++.+|+.+..- ....+++|++|.+--.-
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r---~a~G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~ 122 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRW---KDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTE 122 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCT---TSCCEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEE
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCC---CCCCcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeE
Confidence 566788899999999999997654322221 111122 22333456678776443 23588899999888776
Q ss_pred CCCCCCccCCCCCcccccCCeeeccc-CCccEEEE--eecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccc
Q 014040 121 KDSFGEAEYGVQGTKLVTSPQLVESL-KNIFVVQA--AIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLG 197 (432)
Q Consensus 121 ~n~~gqlg~~~~~~~~~~~p~~v~~~-~~~~I~~v--~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~ 197 (432)
..++-.... ......-.+ ++..++.+ ..+.++.+++|++|+++.+-.+.--..|..... .+...
T Consensus 123 l~e~~~~~r--------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~G-----V~~i~ 189 (323)
T 1wp5_A 123 LKHYKAQRY--------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAG-----VKGMN 189 (323)
T ss_dssp GGGGCCSCC--------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCC-----EECCC
T ss_pred HHHhhhccc--------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcC-----EEEEE
Confidence 544321110 011111111 22334433 346778999999999998876654444432221 11111
Q ss_pred ccCCCCEEEEEecc--c-ceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEE--EEcCCceEE
Q 014040 198 TLENIPVVQIAAGY--C-YLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHAA 272 (432)
Q Consensus 198 ~~~~~~i~~i~~g~--~-~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~--i~~G~~h~~ 272 (432)
...+..|+.+..-. . ..+.+++ +| ...-.-...+..-+++..-.. .+ ..++..+..++. +..+.+..+
T Consensus 190 L~~~d~Vv~~~~~~~~~~~ll~vt~--~G-~gKr~~~~e~~~~~Rg~kGv~-~~---~~~~~~~~~l~~~~~v~~~~~i~ 262 (323)
T 1wp5_A 190 LKEGDYIVSGQLITSKDESIVVATQ--RG-AVKKMKLTEFEKATRAKRGVV-IL---RELKANPHRISGFVVAQDSDTIY 262 (323)
T ss_dssp CCTTCCEEEEEEECCTTCEEEEEET--TS-EEEEEEGGGSCCCCTTSCCEE-CS---CCCSSSCCCEEEEEEECTTCEEE
T ss_pred eCCCCEEEEEEEEcCCCcEEEEEEC--CC-ceEEEEHHHccccCCCCCCEE-Ce---eecCCCCceEEEEEEeCCCCeEE
Confidence 12445566654321 2 3555554 66 433332222222222111100 01 111112223332 334567888
Q ss_pred EEeCCCCEEEEecCCCCcccCC
Q 014040 273 VVGQDGRVCTWGWGRYGCLGHG 294 (432)
Q Consensus 273 ~lt~~g~vy~wG~n~~gqlg~~ 294 (432)
++|++|++.-.--++....|..
T Consensus 263 ~it~~g~~ir~~~~~i~~~~R~ 284 (323)
T 1wp5_A 263 LQTEKSFIETIKVGDIRFSDRY 284 (323)
T ss_dssp EEETTSCEEEEEGGGSCBCCSS
T ss_pred EEeCCCeEEEEEhhhcCccCcc
Confidence 9999999988776665555543
No 115
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=38.49 E-value=2.2e+02 Score=25.54 Aligned_cols=215 Identities=9% Similarity=0.055 Sum_probs=111.1
Q ss_pred CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEE--EeecCceEEEEeCCCCEEEEEecCCCcCC
Q 014040 105 GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQ--AAIGNFFTAVLSREGRVYTFSWGNDARLG 182 (432)
Q Consensus 105 ~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~--v~~G~~~~~~lt~~G~vy~~G~n~~gqlg 182 (432)
...+++|.+|-+--.-..++.....+.. -..-+..-++..++. ++.+.++.+++|++|++|.+-...-...+
T Consensus 9 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~------g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 9 NIVVMLTKKGFLKRLSQNEYKLQGTGGK------GLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp EEEEEEETTCBEEEEEGGGSCBCCSSCC------CEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CEEEEEeCCCEEEEeEHHHhhccccCCC------CceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 4578899999887664443322111100 000111112333444 45567788999999999987554322222
Q ss_pred CCCCCCcccccccccccCCCCEEEEEec-----ccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhcc
Q 014040 183 HHTEPNDVEPHPLLGTLENIPVVQIAAG-----YCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLL 257 (432)
Q Consensus 183 ~~~~~~~~~p~~i~~~~~~~~i~~i~~g-----~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~ 257 (432)
....... ....+.. ..+.+|+.+... ..+.+++|+ +| .++..--..+-.. .........+..
T Consensus 83 r~~~G~~-i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~--~G-~~kr~~l~~~~~~-------r~~G~~~i~L~~- 149 (312)
T 1suu_A 83 RASKGQN-ISELINL-GDQEEILTIKNSKDLTDDAYLLLTTA--SG-KIARFESTDFKAV-------KSRGVIVIKLND- 149 (312)
T ss_dssp -----CB-GGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEET--TS-EEEEEEGGGGCC-----------CEECBCCCT-
T ss_pred ccCCCcC-hhhccCC-CCCCEEEEEEEeccCCCCCEEEEEeC--CC-eEEEEEHHHhhcc-------CCCcEEEEecCC-
Confidence 1111100 0111221 355677777654 344667776 88 8887754332110 011111212222
Q ss_pred CCccEEEE--cCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEec--CCCcEEEEecCCCEE
Q 014040 258 NLQPVVVA--AGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVAT--GDYTTFVVSEDGDVY 333 (432)
Q Consensus 258 ~~~i~~i~--~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~--G~~~s~~lt~~g~vy 333 (432)
+.+++.+. .+..+.+++|++|.+..+-.++.-..|.... .-..+...++..++.+.. ...+.++++++|.+.
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~----Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~k 225 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ----GVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGK 225 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC----CEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC----CeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceE
Confidence 33455433 4566889999999999988776655554321 112222223445555433 345677889889877
Q ss_pred EEeCCCCCC
Q 014040 334 SFGCGESAS 342 (432)
Q Consensus 334 ~~G~n~~gq 342 (432)
..-...+-.
T Consensus 226 r~~~~e~~~ 234 (312)
T 1suu_A 226 RLNMSKISE 234 (312)
T ss_dssp EEEGGGSCB
T ss_pred EEEHHHhcc
Confidence 776555433
No 116
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=38.42 E-value=2.9e+02 Score=26.88 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=14.6
Q ss_pred CEEEEEecccc-eeEEEeeCCCCEEEEEcc
Q 014040 203 PVVQIAAGYCY-LLALACQPSGMAVYSVGC 231 (432)
Q Consensus 203 ~i~~i~~g~~~-~~~l~~~~~G~~vy~~G~ 231 (432)
++..|....+. .++++...+| +|+.|-.
T Consensus 281 ~v~~i~~s~~~~~~~vs~~~~g-~i~vvd~ 309 (543)
T 1nir_A 281 RVAAIIASHEHPEFIVNVKETG-KVLLVNY 309 (543)
T ss_dssp CEEEEEECSSSSEEEEEETTTT-EEEEEEC
T ss_pred ceEEEEECCCCCEEEEEECCCC-eEEEEEe
Confidence 46666555422 2333333466 8888854
No 117
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=37.44 E-value=47 Score=29.33 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=12.4
Q ss_pred CceEEEEeCCCCEEEEec
Q 014040 268 AWHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 268 ~~h~~~lt~~g~vy~wG~ 285 (432)
..|++++. +++||++|-
T Consensus 100 ~~~~~~~~-~~~iyv~GG 116 (302)
T 2xn4_A 100 STLGAAVL-NGLLYAVGG 116 (302)
T ss_dssp BSCEEEEE-TTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEcC
Confidence 45776654 789999984
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=35.73 E-value=2.1e+02 Score=24.52 Aligned_cols=140 Identities=12% Similarity=0.006 Sum_probs=65.9
Q ss_pred eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCC--eEEEEecCCCEEEEeCCCCCCccCCC
Q 014040 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGV 131 (432)
Q Consensus 54 ~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~ 131 (432)
..+++..|++|+.|=... |+ ........ -....|..|+.... +.+.-..||.|..|-......+
T Consensus 37 ~~lAvg~D~tV~iWd~~t-g~--------~~~~~~~~-~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~---- 102 (318)
T 4ggc_A 37 NVLAVALDNSVYLWSASS-GD--------ILQLLQME-QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL---- 102 (318)
T ss_dssp SEEEEEETTEEEEEETTT-CC--------EEEEEECC-STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE----
T ss_pred CEEEEEeCCEEEEEECCC-CC--------EEEEEEec-CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE----
Confidence 466777799999993221 11 00000111 11224666665443 3444457888888854321110
Q ss_pred CCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecc
Q 014040 132 QGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGY 211 (432)
Q Consensus 132 ~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~ 211 (432)
.... .....+..++......+.-..++.+..|-..... ...... ......+..++...
T Consensus 103 ---------~~~~-~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 103 ---------RNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE-----------HHVATL-SGHSQEVCGLRWAP 160 (318)
T ss_dssp ---------EEEE-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CEEEEE-ECCSSCEEEEEECT
T ss_pred ---------EEec-CccceEEEeecCCCEEEEEecCCceEeeecCCCc-----------eeEEEE-cCccCceEEEEEcC
Confidence 0111 1123455555555555555667766655322110 000100 01223355555555
Q ss_pred cceeEEEeeCCCCEEEEEc
Q 014040 212 CYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 212 ~~~~~l~~~~~G~~vy~~G 230 (432)
....+++...+| .|..|-
T Consensus 161 ~~~~l~s~~~d~-~i~iwd 178 (318)
T 4ggc_A 161 DGRHLASGGNDN-LVNVWP 178 (318)
T ss_dssp TSSEEEEEETTS-CEEEEE
T ss_pred CCCEEEEEecCc-ceeEEE
Confidence 444455544577 888884
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=35.09 E-value=2.5e+02 Score=25.16 Aligned_cols=157 Identities=12% Similarity=0.081 Sum_probs=73.1
Q ss_pred CEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEE---eCCCC
Q 014040 203 PVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVV---GQDGR 279 (432)
Q Consensus 203 ~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~l---t~~g~ 279 (432)
.|..++...+..++.. ++ .|+.|-..... ..+..+.. ...+..++. ..+++ ..+|.
T Consensus 102 ~v~~v~~~~~~~~~~~---~~-~i~i~d~~~~~-------------~~~~~~~~-~~~~~~~s~---~~la~~sg~~~g~ 160 (355)
T 3vu4_A 102 PVKDLFLSREFIVVSY---GD-VISVFKFGNPW-------------KRITDDIR-FGGVCEFSN---GLLVYSNEFNLGQ 160 (355)
T ss_dssp CEEEEEECSSEEEEEE---TT-EEEEEESSTTC-------------CBSSCCEE-EEEEEEEET---TEEEEEESSCTTC
T ss_pred ceEEEEEcCCEEEEEE---cC-EEEEEECCCCc-------------eeeEEecc-CCceEEEEc---cEEEEeCCCcCcE
Confidence 5778887776655554 77 89998543220 11111110 112233333 23333 57899
Q ss_pred EEEEecCCCCcccCCCC---CCccCc--EEecccCCCcEEEEecCCCcEEEE--ecCCC-EEEEeCCCCCCCCCCCCcCC
Q 014040 280 VCTWGWGRYGCLGHGNE---ECESVP--KVVQALNDVKAIHVATGDYTTFVV--SEDGD-VYSFGCGESASLGHNAIADG 351 (432)
Q Consensus 280 vy~wG~n~~gqlg~~~~---~~~~~p--~~i~~~~~~~i~~i~~G~~~s~~l--t~~g~-vy~~G~n~~gqlg~~~~~~~ 351 (432)
|..|-.....+.-.... .....| ..+. -....|..++...+..+++ ..||. |..|-...
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~-~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~------------ 227 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIK-AHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED------------ 227 (355)
T ss_dssp EEEEECCC------------------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT------------
T ss_pred EEEEECCCCCccccccccccccccCcccEEEE-ccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC------------
Confidence 99997654322111000 001112 1122 1223566666554433333 56777 88885432
Q ss_pred CCCcccccccCeeeeecc-c-ccceEEEEeeeccccccceEEEEeCCCCEEEecCCC
Q 014040 352 QGNRHANVLTPQLVTSLK-Q-VNERVVQISLTNSIYWNAHTFALTESGKLYAFGAGD 406 (432)
Q Consensus 352 ~~~~~~~~~~p~~v~~~~-~-~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~~wG~n~ 406 (432)
...+..+. . -...|..++.... ....+.-..||.|..|-...
T Consensus 228 ----------~~~~~~~~~g~h~~~v~~~~~s~~---~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 228 ----------GVLVREFRRGLDRADVVDMKWSTD---GSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp ----------CCEEEEEECTTCCSCEEEEEECTT---SCEEEEEETTCEEEEEESSC
T ss_pred ----------CcEEEEEEcCCCCCcEEEEEECCC---CCEEEEEECCCEEEEEEccC
Confidence 11222222 1 2346777776211 23344456889999996544
No 120
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=34.06 E-value=3.9e+02 Score=27.18 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=67.4
Q ss_pred CCCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCcc
Q 014040 51 GPGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAE 128 (432)
Q Consensus 51 G~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg 128 (432)
-..+.+++|+.|++|..--..-- .+...-......++..++.+|+.+... ..+.++.|++|.+.-.-..++-..
T Consensus 513 t~d~ll~ft~~Gr~y~~~~~~lP---~~~~~G~~i~~ll~l~~~e~i~~~~~~~~~~~l~~~T~~G~vk~~~l~~~~~~- 588 (716)
T 1zvu_A 513 SNQPVVFVDSTGRSYAIDPITLP---SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR- 588 (716)
T ss_dssp SSSCEEEEETTSEEEEECTTTSC---CCC---CBSTTTSCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCC-
T ss_pred CCCEEEEEecCCcEEEEEeeecc---cccccCeeHHhccCCCCCCeEEEEEEecCCceEEEEeCCceEEEecHHHhccc-
Confidence 34447889999999988654321 111111112223334456789888765 446788899998887654433110
Q ss_pred CCCCCcccccCCeeeccc-CCccEEEE---eecCceEEEEeCCCCEEEEEecCCCcCC
Q 014040 129 YGVQGTKLVTSPQLVESL-KNIFVVQA---AIGNFFTAVLSREGRVYTFSWGNDARLG 182 (432)
Q Consensus 129 ~~~~~~~~~~~p~~v~~~-~~~~I~~v---~~G~~~~~~lt~~G~vy~~G~n~~gqlg 182 (432)
.......-.+ .+..++.+ ..+..+.++++++|++..|-...--.+|
T Consensus 589 --------~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~g 638 (716)
T 1zvu_A 589 --------NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 638 (716)
T ss_dssp --------STTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCS
T ss_pred --------CccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccC
Confidence 0111111112 12233322 2467789999999999988766543333
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=33.69 E-value=2.6e+02 Score=25.00 Aligned_cols=27 Identities=11% Similarity=-0.036 Sum_probs=13.9
Q ss_pred CEEEEEecccce-eEEEeeCCCCEEEEEc
Q 014040 203 PVVQIAAGYCYL-LALACQPSGMAVYSVG 230 (432)
Q Consensus 203 ~i~~i~~g~~~~-~~l~~~~~G~~vy~~G 230 (432)
.+..++...+.. ++++...++ .|+.|-
T Consensus 117 ~~~~~~~s~dg~~l~~~~~~~~-~v~~~d 144 (391)
T 1l0q_A 117 SPLGLALSPDGKKLYVTNNGDK-TVSVIN 144 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTT-EEEEEE
T ss_pred CcceEEECCCCCEEEEEeCCCC-EEEEEE
Confidence 355555543332 334443456 888873
No 122
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=32.81 E-value=1.7e+02 Score=26.37 Aligned_cols=19 Identities=21% Similarity=0.158 Sum_probs=14.0
Q ss_pred CCCcEEEEecCCCEEEEeCC
Q 014040 319 GDYTTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 319 G~~~s~~lt~~g~vy~~G~n 338 (432)
-..|++++ .+++||++|-.
T Consensus 109 r~~~~~~~-~~~~iyv~GG~ 127 (357)
T 2uvk_A 109 MAGHVTFV-HNGKAYVTGGV 127 (357)
T ss_dssp CSSEEEEE-ETTEEEEEECC
T ss_pred cccceEEE-ECCEEEEEeCc
Confidence 34666666 68899999953
No 123
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=32.75 E-value=2.9e+02 Score=25.29 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=52.2
Q ss_pred cEEEEEcC--CCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeeccc--CCccEEEEeecC--ceEEEEeCCCC
Q 014040 96 RIIQAAAG--AGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESL--KNIFVVQAAIGN--FFTAVLSREGR 169 (432)
Q Consensus 96 ~i~~v~~g--~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~--~~~~I~~v~~G~--~~~~~lt~~G~ 169 (432)
.|..|+.. ....+.-..||.|..|-..... .+..+ ....|..++... .+.+.-..|+.
T Consensus 152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~----------------~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~ 215 (410)
T 1vyh_C 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFE----------------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215 (410)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSC----------------EEECCCCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----------------eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 56666543 2334444567777777543211 11111 123466666543 45555678899
Q ss_pred EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014040 170 VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 170 vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
|..|-..... ...... .....|..+....+..++++-..|| .|..|-
T Consensus 216 i~~wd~~~~~------------~~~~~~-~h~~~v~~~~~~~~g~~l~s~s~D~-~v~vwd 262 (410)
T 1vyh_C 216 IKMWEVQTGY------------CVKTFT-GHREWVRMVRPNQDGTLIASCSNDQ-TVRVWV 262 (410)
T ss_dssp EEEEETTTCC------------EEEEEE-CCSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred EEEEECCCCc------------EEEEEe-CCCccEEEEEECCCCCEEEEEcCCC-eEEEEE
Confidence 9888432210 000000 1223366666555555555544577 888884
No 124
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=32.49 E-value=3e+02 Score=25.36 Aligned_cols=70 Identities=16% Similarity=0.122 Sum_probs=35.6
Q ss_pred eecccceEecCC--CeEEEE-ecCCcEEEEeCCCCCCcCCCCCCCcccccccCcC-CCCcEEEEEcC---CCeEEEEecC
Q 014040 41 CRRENSQAIAGP--GHSIAV-TSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSL-QGIRIIQAAAG---AGRTMLISDA 113 (432)
Q Consensus 41 ~~~~i~~i~~G~--~~~~~l-~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~-~~~~i~~v~~g---~~~~~~lt~~ 113 (432)
..++|..++.-. ...++. ..||.|..|=.... ..+..+... ....|..|+.. ....+.-..|
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D 186 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME 186 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-----------SCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC
Confidence 445677777542 223333 57899999932211 011111111 12256666543 3344445568
Q ss_pred CCEEEEeC
Q 014040 114 GQVYAFGK 121 (432)
Q Consensus 114 g~vy~~G~ 121 (432)
|.|..|-.
T Consensus 187 ~~v~iwd~ 194 (435)
T 4e54_B 187 GTTRLQDF 194 (435)
T ss_dssp SCEEEEET
T ss_pred CEEEEeec
Confidence 88888853
No 125
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=32.31 E-value=2.7e+02 Score=24.84 Aligned_cols=12 Identities=17% Similarity=0.025 Sum_probs=7.9
Q ss_pred ecCCCEEEEeCC
Q 014040 327 SEDGDVYSFGCG 338 (432)
Q Consensus 327 t~~g~vy~~G~n 338 (432)
..++.|+.|-..
T Consensus 263 ~~d~~v~v~d~~ 274 (391)
T 1l0q_A 263 SFXNTVSVIDTA 274 (391)
T ss_dssp TTTTEEEEEETT
T ss_pred CCCCEEEEEECC
Confidence 456778887643
No 126
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=32.13 E-value=2.8e+02 Score=24.81 Aligned_cols=194 Identities=8% Similarity=-0.002 Sum_probs=96.4
Q ss_pred cEEEEEcCC---CeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecc-cCCccEEEEeecC---ceEEEEeCCC
Q 014040 96 RIIQAAAGA---GRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVES-LKNIFVVQAAIGN---FFTAVLSREG 168 (432)
Q Consensus 96 ~i~~v~~g~---~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~-~~~~~I~~v~~G~---~~~~~lt~~G 168 (432)
.|..++... ...+.-..||.|..|-..... ....+.. -....|..++... ...+.-..||
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 141 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN-------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG 141 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT-------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc-------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence 566665443 345555567888888544210 0111111 1234577777754 3445567889
Q ss_pred CEEEEEecCCCcCCCCCCCCccccccccc-ccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCC
Q 014040 169 RVYTFSWGNDARLGHHTEPNDVEPHPLLG-TLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKH 247 (432)
Q Consensus 169 ~vy~~G~n~~gqlg~~~~~~~~~p~~i~~-~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~ 247 (432)
.|..|-... .. ...+.. ......|..++...+...+++-..+| .|+.|-..
T Consensus 142 ~i~iwd~~~----------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~--------------- 193 (383)
T 3ei3_B 142 ATTLRDFSG----------SV--IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTG-RLLLLGLD--------------- 193 (383)
T ss_dssp EEEEEETTS----------CE--EEEEECCCCSSCCEEEEEEETTTTEEEEEETTS-EEEEEETT---------------
T ss_pred EEEEEECCC----------Cc--eEEEeccCCCCCCeEEEEECCCCCEEEEECCCC-CEEEEECC---------------
Confidence 999884321 00 011110 01123466666665555555555578 99998531
Q ss_pred ceeeehhhccCCccEEEEcCCc---eEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCC---C
Q 014040 248 PRLIEQFQLLNLQPVVVAAGAW---HAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGD---Y 321 (432)
Q Consensus 248 p~~~~~~~~~~~~i~~i~~G~~---h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~---~ 321 (432)
...+..+......|..++.... ..+.-..|+.|..|-...... ...+.... .....|..++... .
T Consensus 194 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~-~~~~~v~~~~~s~~~~~ 264 (383)
T 3ei3_B 194 GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD--------KNSYIAEM-PHEKPVNAAYFNPTDST 264 (383)
T ss_dssp SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS--------TTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc--------ccceEEEe-cCCCceEEEEEcCCCCC
Confidence 0112222223345555555443 344456788888886533110 01111111 1223566666543 4
Q ss_pred cEEEEecCCCEEEEeCCC
Q 014040 322 TTFVVSEDGDVYSFGCGE 339 (432)
Q Consensus 322 ~s~~lt~~g~vy~~G~n~ 339 (432)
..++-..+|.|..|-...
T Consensus 265 ~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EEEEEESSSEEEEEETTB
T ss_pred EEEEEcCCCcEEEEECCC
Confidence 444456678999997543
No 127
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=31.47 E-value=2.8e+02 Score=24.64 Aligned_cols=258 Identities=8% Similarity=-0.085 Sum_probs=0.0
Q ss_pred cEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEe
Q 014040 96 RIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSW 175 (432)
Q Consensus 96 ~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~ 175 (432)
.+.++.-+.-.++....+|+....|..+..-.=......................-..++......+....||.|..|
T Consensus 5 ~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vw-- 82 (377)
T 3dwl_C 5 QVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVY-- 82 (377)
T ss_dssp EEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEE--
Q ss_pred cCCCcCCCCCCCCccccc----ccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 176 GNDARLGHHTEPNDVEPH----PLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 176 n~~gqlg~~~~~~~~~p~----~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
+..... ..........|..++...+...+++-..+| .|+.| ..........+
T Consensus 83 ------------d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iw-----------d~~~~~~~~~~ 138 (377)
T 3dwl_C 83 ------------EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR-VISVC-----------YFEQENDWWVS 138 (377)
T ss_dssp ------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSS-CEEEC-----------CC-----CCCC
T ss_pred ------------EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCC-eEEEE-----------EECCcccceee
Q ss_pred ehhhc-cCCccEEEEcCCc--eEEEEeCCCCEEEEecCCCCcccCCCCC------CccCcEEecccCCCcEEEEec--CC
Q 014040 252 EQFQL-LNLQPVVVAAGAW--HAAVVGQDGRVCTWGWGRYGCLGHGNEE------CESVPKVVQALNDVKAIHVAT--GD 320 (432)
Q Consensus 252 ~~~~~-~~~~i~~i~~G~~--h~~~lt~~g~vy~wG~n~~gqlg~~~~~------~~~~p~~i~~~~~~~i~~i~~--G~ 320 (432)
..+.. ....|..++...+ ..+.-..||.|+.|-......-...... ....+.... .....|..++. ..
T Consensus 139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~ 217 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG 217 (377)
T ss_dssp EEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS
T ss_pred eEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC
Q ss_pred CcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeeccccccceEEEEeCCCCEE
Q 014040 321 YTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTNSIYWNAHTFALTESGKLY 400 (432)
Q Consensus 321 ~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~~~~G~~~~~~lt~~G~v~ 400 (432)
...+.-..+|.|..|- .......|..+..+......|..++.. -+...++...++.+.
T Consensus 218 ~~l~~~~~d~~i~iwd------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~~~~~ 275 (377)
T 3dwl_C 218 NALAYAGHDSSVTIAY------------------PSAPEQPPRALITVKLSQLPLRSLLWA----NESAIVAAGYNYSPI 275 (377)
T ss_dssp SCEEEEETTTEEC-CE------------------ECSTTSCEEECCCEECSSSCEEEEEEE----ETTEEEEEESSSSEE
T ss_pred CEEEEEeCCCcEEEEE------------------CCCCCCcceeeEeecCCCCceEEEEEc----CCCCEEEEEcCCcEE
Q ss_pred Ee
Q 014040 401 AF 402 (432)
Q Consensus 401 ~w 402 (432)
.|
T Consensus 276 ~~ 277 (377)
T 3dwl_C 276 LL 277 (377)
T ss_dssp EE
T ss_pred EE
No 128
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=31.15 E-value=2.6e+02 Score=24.20 Aligned_cols=75 Identities=8% Similarity=-0.035 Sum_probs=35.8
Q ss_pred eecccceEecCCC--eEEE-EecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC--CCeEEEEecCCC
Q 014040 41 CRRENSQAIAGPG--HSIA-VTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG--AGRTMLISDAGQ 115 (432)
Q Consensus 41 ~~~~i~~i~~G~~--~~~~-l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g--~~~~~~lt~~g~ 115 (432)
....|.+|+.-.. ..++ -..||+|..|=-.... .....|...-......|..++.. ....+.-..||.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~-------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE-------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS-------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC-------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 3456777775532 2222 3468999998533210 11111221111112245555543 334444556777
Q ss_pred EEEEeCC
Q 014040 116 VYAFGKD 122 (432)
Q Consensus 116 vy~~G~n 122 (432)
|+.|-..
T Consensus 110 i~~~~~~ 116 (340)
T 4aow_A 110 LRLWDLT 116 (340)
T ss_dssp EEEEETT
T ss_pred ceEEeec
Confidence 7777543
No 129
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=28.03 E-value=4.9e+02 Score=26.40 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=13.2
Q ss_pred cEEEEecCCCEEEEeCC
Q 014040 322 TTFVVSEDGDVYSFGCG 338 (432)
Q Consensus 322 ~s~~lt~~g~vy~~G~n 338 (432)
.+++.+.+|++|.-|.+
T Consensus 631 ~~~~~~~~G~l~~g~~~ 647 (781)
T 3v9f_A 631 GCVTKDHNGLIYFGSIN 647 (781)
T ss_dssp EEEEECTTSCEEEEETT
T ss_pred CceEECCCCEEEEECCC
Confidence 36777889999987755
No 130
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=26.79 E-value=2.9e+02 Score=23.34 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=12.9
Q ss_pred CCeEEEEecCCcEEEEeC
Q 014040 52 PGHSIAVTSKGVVYSFGS 69 (432)
Q Consensus 52 ~~~~~~l~~~g~v~~~G~ 69 (432)
.-+.++++.+|++|+...
T Consensus 21 ~p~~i~~d~~g~l~v~~~ 38 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQH 38 (300)
T ss_dssp CEEEEEECTTSCEEEEET
T ss_pred CcceeeECCCCCEEEEcC
Confidence 345677788888888754
No 131
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=25.59 E-value=3.6e+02 Score=24.03 Aligned_cols=72 Identities=10% Similarity=-0.025 Sum_probs=40.2
Q ss_pred CccEEEEeecCce--EEEEeCCCC-EEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCC
Q 014040 148 NIFVVQAAIGNFF--TAVLSREGR-VYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGM 224 (432)
Q Consensus 148 ~~~I~~v~~G~~~--~~~lt~~G~-vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~ 224 (432)
...|..++...+. .+.-..||. |..|-..... ....+........|..++...+...+++-..+|
T Consensus 195 ~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~-----------~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~- 262 (355)
T 3vu4_A 195 TNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV-----------LVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW- 262 (355)
T ss_dssp SSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC-----------EEEEEECTTCCSCEEEEEECTTSCEEEEEETTC-
T ss_pred CCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc-----------EEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC-
Confidence 3457777776554 333457887 8888433210 011111001234587887776655555555588
Q ss_pred EEEEEcc
Q 014040 225 AVYSVGC 231 (432)
Q Consensus 225 ~vy~~G~ 231 (432)
.|..|--
T Consensus 263 ~v~iw~~ 269 (355)
T 3vu4_A 263 TLHVFEI 269 (355)
T ss_dssp EEEEEES
T ss_pred EEEEEEc
Confidence 9999964
No 132
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=25.41 E-value=3.9e+02 Score=24.39 Aligned_cols=57 Identities=12% Similarity=-0.040 Sum_probs=30.9
Q ss_pred eEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEc
Q 014040 160 FTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVG 230 (432)
Q Consensus 160 ~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G 230 (432)
+.+.-..||.|..|-.... .+..... .....|..++...+...+++-..|| .|+.|-
T Consensus 310 ~l~sgs~D~~i~iwd~~~~------------~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~-~i~vwd 366 (410)
T 1vyh_C 310 FLLSGSRDKTIKMWDVSTG------------MCLMTLV-GHDNWVRGVLFHSGGKFILSCADDK-TLRVWD 366 (410)
T ss_dssp EEEEEETTSEEEEEETTTT------------EEEEEEE-CCSSCEEEEEECSSSSCEEEEETTT-EEEEEC
T ss_pred EEEEEeCCCeEEEEECCCC------------ceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 4455567888888843221 0111000 1233477776655544455544588 999994
No 133
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=25.29 E-value=3e+02 Score=22.96 Aligned_cols=189 Identities=14% Similarity=0.051 Sum_probs=0.0
Q ss_pred eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeC-CCCEEEEEecCCCcCCCC
Q 014040 106 RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSR-EGRVYTFSWGNDARLGHH 184 (432)
Q Consensus 106 ~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~-~G~vy~~G~n~~gqlg~~ 184 (432)
+.++++.+|++|+.+....+.+-.- .................+..|+...+-.+++++ ++.|+.|
T Consensus 27 ~~i~~~~~g~l~v~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~----------- 92 (270)
T 1rwi_B 27 SGVAVDSAGNVYVTSEGMYGRVVKL---ATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL----------- 92 (270)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEE---CC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEE-----------
T ss_pred cceEECCCCCEEEEccCCCCcEEEe---cCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEE-----------
Q ss_pred CCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEE
Q 014040 185 TEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVV 264 (432)
Q Consensus 185 ~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i 264 (432)
.................+..++...+..+.++...++ .|+.| .......-.........|
T Consensus 93 --d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~-~i~~~-~~~~~~~~~~~~~~~~~p---------------- 152 (270)
T 1rwi_B 93 --AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNN-RVVKL-AAGSKTQTVLPFTGLNDP---------------- 152 (270)
T ss_dssp --CTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGT-EEEEE-CTTCCSCEECCCCSCCSC----------------
T ss_pred --eCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCC-EEEEE-ECCCceeEeeccccCCCc----------------
Q ss_pred EcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEEecccCCCcEEEEecCCCcEEEEec--CCCEEEE
Q 014040 265 AAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKVVQALNDVKAIHVATGDYTTFVVSE--DGDVYSF 335 (432)
Q Consensus 265 ~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~i~~i~~G~~~s~~lt~--~g~vy~~ 335 (432)
+.++++.+|++|+.......-.-...............+ ..+..|+......+.+.. ++.|+.|
T Consensus 153 -----~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~g~l~v~~~~~~~v~~~ 218 (270)
T 1rwi_B 153 -----DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI--TAPWGIAVDEAGTVYVTEHNTNQVVKL 218 (270)
T ss_dssp -----CCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC--CSEEEEEECTTCCEEEEETTTSCEEEE
T ss_pred -----eeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCC--CCceEEEECCCCCEEEEECCCCcEEEE
No 134
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=25.25 E-value=3.2e+02 Score=23.36 Aligned_cols=79 Identities=4% Similarity=-0.065 Sum_probs=42.9
Q ss_pred ecccceEecC----CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcC----CCeEEEEecC
Q 014040 42 RRENSQAIAG----PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAG----AGRTMLISDA 113 (432)
Q Consensus 42 ~~~i~~i~~G----~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g----~~~~~~lt~~ 113 (432)
...|..++.- ....+....||.|..|-......... .....+..........|..++.. ....+....|
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECS---GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTS---SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccc---ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 3467666654 34455556788898886543211100 00111111111223467777765 3456667789
Q ss_pred CCEEEEeCCC
Q 014040 114 GQVYAFGKDS 123 (432)
Q Consensus 114 g~vy~~G~n~ 123 (432)
|.|+.|-...
T Consensus 134 g~v~iwd~~~ 143 (351)
T 3f3f_A 134 GILRLYDALE 143 (351)
T ss_dssp CEEEEEECSS
T ss_pred CcEEEecCCC
Confidence 9999997543
No 135
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=23.08 E-value=4e+02 Score=23.68 Aligned_cols=219 Identities=12% Similarity=0.080 Sum_probs=109.7
Q ss_pred EeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccc--ccccccCCCCEEEEEec-----ccceeEEEeeCCCCEE
Q 014040 154 AAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPH--PLLGTLENIPVVQIAAG-----YCYLLALACQPSGMAV 226 (432)
Q Consensus 154 v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~--~i~~~~~~~~i~~i~~g-----~~~~~~l~~~~~G~~v 226 (432)
++.+.++.++.|+.|++|.+-...-...+... .=.|. .+. ...+++|+.+..- ..+.+++|+ +| .+
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a---~G~~i~~~l~-l~~~e~i~~~~~~~~~~~~~~ll~~T~--~G-~~ 121 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGA---RGRPIVNLLP-LEQDERITAILPVTEFEEGVKVFMATA--NG-TV 121 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSS---CCEEGGGTSC-CCTTCCEEEEEEESCCCTTCEEEEEET--TS-EE
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCC---CCeEhhhccC-CCCCCEEEEEEEeccCCCCcEEEEEeC--CC-eE
Confidence 45667788999999999987655533332211 11111 111 1356678777542 234566676 88 77
Q ss_pred EEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEE--EEcCCceEEEEeCCCCEEEEecCCCCcccCCCCCCccCcEE
Q 014040 227 YSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVV--VAAGAWHAAVVGQDGRVCTWGWGRYGCLGHGNEECESVPKV 304 (432)
Q Consensus 227 y~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~--i~~G~~h~~~lt~~g~vy~wG~n~~gqlg~~~~~~~~~p~~ 304 (432)
.-.--.++.... ........+.. +.+++. ...+..+.+++|++|+++-+-..+.-.+|.... ....
T Consensus 122 Krt~l~e~~~~~-------r~G~~~i~l~~-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~----Gv~~ 189 (307)
T 1zi0_A 122 KKTVLTEFNRLR-------TAGKVAIKLVD-GDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT----GVRG 189 (307)
T ss_dssp EEEEGGGGTTCC-------TTCEESSCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC----CEEC
T ss_pred EEEEHHHhhccc-------cCCeEEEEECC-CCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC----CeEe
Confidence 655322221110 01111111111 123333 334667899999999999987766555554321 1122
Q ss_pred ecccCCCcEEEEecC--CCcEEEEecCCCEEEEeCCCCCCCCCCCCcCCCCCcccccccCeeeeecccccceEEEEeeec
Q 014040 305 VQALNDVKAIHVATG--DYTTFVVSEDGDVYSFGCGESASLGHNAIADGQGNRHANVLTPQLVTSLKQVNERVVQISLTN 382 (432)
Q Consensus 305 i~~~~~~~i~~i~~G--~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~i~~i~~~~ 382 (432)
+...++.+|+.+..- ....+++|++|.+--.-...+-.-+.+. .-.....+...+..++.+....
T Consensus 190 i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-------------kG~~~~~~~~~~~~lv~~~~v~ 256 (307)
T 1zi0_A 190 IRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-------------KGVISIKVTERNGLVVGAVQVD 256 (307)
T ss_dssp CCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-------------CCEESSCCCTTTCSEEEEEEEC
T ss_pred EEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-------------CCEEeeEecCCCCeEEEEEEeC
Confidence 333355677776542 2345666777764444322221111111 0111111211223344433211
Q ss_pred cccccceEEEEeCCCCEEEecCCCC
Q 014040 383 SIYWNAHTFALTESGKLYAFGAGDK 407 (432)
Q Consensus 383 ~~~G~~~~~~lt~~G~v~~wG~n~~ 407 (432)
.....+++|++|++...-.++-
T Consensus 257 ---~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 257 ---DCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp ---TTCEEEEEESSCCEEEEEGGGS
T ss_pred ---CCceEEEEcCCCcEEEEecccc
Confidence 4466788899999887654443
No 136
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=23.03 E-value=3.6e+02 Score=23.20 Aligned_cols=149 Identities=14% Similarity=0.025 Sum_probs=74.2
Q ss_pred cEEEEEcCCC--eEEEEecCCCEEEEeCCCCCCccCCCCCcccccCCeeecccCCccEEEEee--cCceEEEEeCCCCEE
Q 014040 96 RIIQAAAGAG--RTMLISDAGQVYAFGKDSFGEAEYGVQGTKLVTSPQLVESLKNIFVVQAAI--GNFFTAVLSREGRVY 171 (432)
Q Consensus 96 ~i~~v~~g~~--~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~I~~v~~--G~~~~~~lt~~G~vy 171 (432)
.|..|+.... ..+.-..||.|..|-...... ...+. .....|..++. .....+.-..|+.|.
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-------------~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-------------VRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-------------EEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-------------eEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 4666655433 344445688888885432100 01111 11223444433 334455566788888
Q ss_pred EEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceee
Q 014040 172 TFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLI 251 (432)
Q Consensus 172 ~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~ 251 (432)
.|-..... ....+. .....|..++...+...+++-..|| .|..|-.... ....
T Consensus 81 vwd~~~~~-----------~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~-~v~lWd~~~~-------------~~~~ 133 (304)
T 2ynn_A 81 VFNYNTGE-----------KVVDFE--AHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENN-------------WALE 133 (304)
T ss_dssp EEETTTCC-----------EEEEEE--CCSSCEEEEEECSSSSEEEEEETTS-CEEEEEGGGT-------------TEEE
T ss_pred EEECCCCc-----------EEEEEe--CCCCcEEEEEEcCCCCEEEEECCCC-eEEEEECCCC-------------cchh
Confidence 88432210 001111 2233577787776666666665688 8888842211 0111
Q ss_pred ehhhccCCccEEEEcCC---ceEEEEeCCCCEEEEec
Q 014040 252 EQFQLLNLQPVVVAAGA---WHAAVVGQDGRVCTWGW 285 (432)
Q Consensus 252 ~~~~~~~~~i~~i~~G~---~h~~~lt~~g~vy~wG~ 285 (432)
..+......|..++... ...+.-..||.|..|-.
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEET
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence 11222333455555432 34445577889999864
No 137
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=22.87 E-value=4.3e+02 Score=23.96 Aligned_cols=226 Identities=10% Similarity=-0.025 Sum_probs=0.0
Q ss_pred eEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccc-------cCcCCCCcEEEEEcCCCe---EEEEecCCCEEEEeCCC
Q 014040 54 HSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRP-------IRSLQGIRIIQAAAGAGR---TMLISDAGQVYAFGKDS 123 (432)
Q Consensus 54 ~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~-------i~~~~~~~i~~v~~g~~~---~~~lt~~g~vy~~G~n~ 123 (432)
..+....+|+.++.| .++.+-.=+......+.. ........|..++..... .+.-..||.|..|-...
T Consensus 181 ~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~ 258 (447)
T 3dw8_B 181 NSISINSDYETYLSA--DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA 258 (447)
T ss_dssp CEEEECTTSSEEEEE--CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred EEEEEcCCCCEEEEe--CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC
Q ss_pred CCC----ccCCCCCcccccCCeeecccCCccEEEEeecCceEEEEeCCCCEEEEEecCCCcCCCCCCCCccccccccccc
Q 014040 124 FGE----AEYGVQGTKLVTSPQLVESLKNIFVVQAAIGNFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTL 199 (432)
Q Consensus 124 ~gq----lg~~~~~~~~~~~p~~v~~~~~~~I~~v~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~ 199 (432)
... +..-.........+..........-..+.......+.-.. |.|..|-....+++-............+....
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 259 SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred CccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Q ss_pred CCCCEEE---EEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeeh------------------hhccC
Q 014040 200 ENIPVVQ---IAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQ------------------FQLLN 258 (432)
Q Consensus 200 ~~~~i~~---i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~------------------~~~~~ 258 (432)
....+.. ++...+...+++-..+| .|+.|-......+-.........+..+.. .....
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMTGSYNN-FFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN 416 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEEECSTT-EEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred cccccccceEEEECCCCCEEEEeccCC-EEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccC
Q ss_pred CccEEEEcCCc-eEEEEeCCCCEEEE
Q 014040 259 LQPVVVAAGAW-HAAVVGQDGRVCTW 283 (432)
Q Consensus 259 ~~i~~i~~G~~-h~~~lt~~g~vy~w 283 (432)
.+|..++-... ..+|+...+.+|.|
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~~~~~ 442 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNNLYIF 442 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSCEEEE
T ss_pred CceeEEEECCCCCEEEEEecceeeee
No 138
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=21.61 E-value=4.1e+02 Score=23.28 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=15.8
Q ss_pred CCCeEEEEecCCCEEEEeCCC
Q 014040 103 GAGRTMLISDAGQVYAFGKDS 123 (432)
Q Consensus 103 g~~~~~~lt~~g~vy~~G~n~ 123 (432)
+.-..++++.+|++|+.+...
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTT
T ss_pred CCceEEEECCCCCEEEEeCCC
Confidence 444677888889999887654
No 139
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=21.56 E-value=6.5e+02 Score=25.53 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=13.3
Q ss_pred eEEEEeCCCCEEEecCCC
Q 014040 389 HTFALTESGKLYAFGAGD 406 (432)
Q Consensus 389 ~~~~lt~~G~v~~wG~n~ 406 (432)
.+++.+.+|++|.-|.+.
T Consensus 634 ~~~~~~~~G~l~~g~~~G 651 (795)
T 4a2l_A 634 ASYCRTSVGQMYFGGING 651 (795)
T ss_dssp EEEEECTTSCEEEEETTE
T ss_pred CceeECCCCeEEEecCCc
Confidence 456677889999887663
No 140
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=21.09 E-value=4.2e+02 Score=23.21 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=21.6
Q ss_pred cceEecCCCeEEEEecCCcEEEEeCCC
Q 014040 45 NSQAIAGPGHSIAVTSKGVVYSFGSNS 71 (432)
Q Consensus 45 i~~i~~G~~~~~~l~~~g~v~~~G~n~ 71 (432)
.++...|.-..++++.+|++|+.+.+.
T Consensus 18 ~~~~~l~~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 18 GVYLLPGQVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp GGGCCCSCEEEEEECTTCCEEEEECTT
T ss_pred hhceecCCceEEEECCCCCEEEEeCCC
Confidence 345566777889999999999998765
No 141
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=20.93 E-value=4.9e+02 Score=23.86 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=17.4
Q ss_pred CccEEEEeecC--ceEEE-EeCCCCEEEE
Q 014040 148 NIFVVQAAIGN--FFTAV-LSREGRVYTF 173 (432)
Q Consensus 148 ~~~I~~v~~G~--~~~~~-lt~~G~vy~~ 173 (432)
+.+|..|+... ...++ =..||.|..|
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lW 147 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLW 147 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEE
Confidence 44688888753 23343 4689999988
No 142
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=20.87 E-value=4.1e+02 Score=22.94 Aligned_cols=158 Identities=13% Similarity=0.057 Sum_probs=81.3
Q ss_pred EEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEE--EcCCCeEEEEecCCCEEEEeCCCCCCccCCCC
Q 014040 55 SIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQA--AAGAGRTMLISDAGQVYAFGKDSFGEAEYGVQ 132 (432)
Q Consensus 55 ~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v--~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~~ 132 (432)
.+++|++|-+--.-....+ +..+..-.+..++.+ +....+.+++|+.|++|..--.+. ....
T Consensus 5 ~v~lT~~G~iKr~~~~~~~------------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~r- 68 (256)
T 1zvt_A 5 TIVLSQMGWVRSAKGHDID------------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSAR- 68 (256)
T ss_dssp EEEEETTSEEEEEESSCCC------------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCSS-
T ss_pred EEEEeCCCEEEEeeCCcCC------------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCcC-
Confidence 5678888877544322111 122222233445444 456678999999999999876542 1111
Q ss_pred CcccccCCeeecccCCccEEEEeec--CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEE--E
Q 014040 133 GTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQI--A 208 (432)
Q Consensus 133 ~~~~~~~p~~v~~~~~~~I~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i--~ 208 (432)
.........+....+.+|+.+... ..+.+++|++|.+.-.-...+-...... . ..+.. ..+..++.+ .
T Consensus 69 -~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G----~--~~i~L-~~~d~lv~~~~~ 140 (256)
T 1zvt_A 69 -GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG----K--ALITL-PENAHVMPPVVI 140 (256)
T ss_dssp -SCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTC----E--ECBCC-CTTCCBCCCEEC
T ss_pred -CCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCc----e--EEEEE-CCCCEEEEEEEe
Confidence 111111112333346678887663 3457789999988866544431110000 0 00110 112233332 2
Q ss_pred -ecccceeEEEeeCCCCEEEEEccCCCCCcCC
Q 014040 209 -AGYCYLLALACQPSGMAVYSVGCGLGGKLGH 239 (432)
Q Consensus 209 -~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~ 239 (432)
.+.+..+++++ +| .+.-+-.+....+|+
T Consensus 141 ~~~~~~i~l~T~--~G-~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 141 EDASDMLLAITQ--AG-RMLMFPVSDLPQLSK 169 (256)
T ss_dssp CCTTCEEEEEET--TS-EEEEEEGGGSCBCSS
T ss_pred cCCCCEEEEEcC--CC-eEEEEEHHHCCCcCc
Confidence 25566777776 88 887776554444443
No 143
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=20.47 E-value=4.4e+02 Score=23.14 Aligned_cols=182 Identities=7% Similarity=-0.122 Sum_probs=0.0
Q ss_pred CCeEEEEecCCcEEEEeCCCCCCcCCCCCCCcccccccCcCCCCcEEEEEcCCCeEEEEecCCCEEEEeCCCCCCccCCC
Q 014040 52 PGHSIAVTSKGVVYSFGSNSSGQLGHGTTEEEWRPRPIRSLQGIRIIQAAAGAGRTMLISDAGQVYAFGKDSFGEAEYGV 131 (432)
Q Consensus 52 ~~~~~~l~~~g~v~~~G~n~~gqlG~~~~~~~~~p~~i~~~~~~~i~~v~~g~~~~~~lt~~g~vy~~G~n~~gqlg~~~ 131 (432)
....+.-..|+.|..|=-. ......+.........-..++......+.-..||.|..|
T Consensus 154 ~~~l~s~s~d~~i~~wd~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~w------------ 211 (340)
T 1got_B 154 DNQIVTSSGDTTCALWDIE----------TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW------------ 211 (340)
T ss_dssp TTEEEEEETTSCEEEEETT----------TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE------------
T ss_pred CCcEEEEECCCcEEEEECC----------CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEE------------
Q ss_pred CCcccccCCeeecccCCccEEEEeec--CceEEEEeCCCCEEEEEecCCCcCCCCCCCCcccccccccccCCCCEEEEEe
Q 014040 132 QGTKLVTSPQLVESLKNIFVVQAAIG--NFFTAVLSREGRVYTFSWGNDARLGHHTEPNDVEPHPLLGTLENIPVVQIAA 209 (432)
Q Consensus 132 ~~~~~~~~p~~v~~~~~~~I~~v~~G--~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~p~~i~~~~~~~~i~~i~~ 209 (432)
+.....+..........|..|+.. ....+.-..||.|..| +..................|..++.
T Consensus 212 --d~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw-----------d~~~~~~~~~~~~~~~~~~v~~~~~ 278 (340)
T 1got_B 212 --DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF-----------DLRADQELMTYSHDNIICGITSVSF 278 (340)
T ss_dssp --ETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE-----------ETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred --ECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE-----------ECCCCcEEEEEccCCcccceEEEEE
Q ss_pred cccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCc--eEEEEeCCCCEEEE
Q 014040 210 GYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAW--HAAVVGQDGRVCTW 283 (432)
Q Consensus 210 g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~--h~~~lt~~g~vy~w 283 (432)
..+..++++-..+| .|+.| +......+..+......|..++...+ +.+.-..||.|..|
T Consensus 279 s~~g~~l~~g~~d~-~i~vw--------------d~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 279 SKSGRLLLAGYDDF-NCNVW--------------DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp CTTSSEEEEEETTS-EEEEE--------------ETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCCEEEEECCCC-eEEEE--------------EcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
No 144
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=20.39 E-value=5e+02 Score=25.76 Aligned_cols=86 Identities=7% Similarity=-0.102 Sum_probs=41.0
Q ss_pred CCCEEEEEecccceeEEEeeCCCCEEEEEccCCCCCcCCCCCCCCCCceeeehhhccCCccEEEEcCCceEEEEeCCCCE
Q 014040 201 NIPVVQIAAGYCYLLALACQPSGMAVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQPVVVAAGAWHAAVVGQDGRV 280 (432)
Q Consensus 201 ~~~i~~i~~g~~~~~~l~~~~~G~~vy~~G~n~~gqlg~~~~~~~~~p~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v 280 (432)
+.+.-+..-..+++..|.+.+.+ .||+=+.+.--.|...+............ .....-..+-.|-.+--++...+.+|
T Consensus 19 ~~~~f~f~~~~~y~~llld~~~~-~L~VGar~~i~~l~~~~~~~~~~~~~~~~-~~~~~C~~k~eC~NyIrvl~~~~~~l 96 (590)
T 3nvq_A 19 GQDRVDFGQTEPHTVLFHEPGSS-SVWVGGRGKVYLFDFPEGKNASVRTVNIG-STKGSCLDKRDCENYITLLERRSEGL 96 (590)
T ss_dssp TTSEEECSSCCSSCEEECCTTCS-EEEEECBSEEEEEECCTTSCCBCCEEECC-SCSSCCSSCSSCCCBEEEEEEETTEE
T ss_pred CceEEecCCCCceeEEEEcCCCC-EEEEeecceEEEeeCCCCCccceEecCCH-HHhhhhhccccccceEEEeeecCCcE
Confidence 33344444556666666654455 88887766544444332211111000100 00111111234444434444555669
Q ss_pred EEEecCCC
Q 014040 281 CTWGWGRY 288 (432)
Q Consensus 281 y~wG~n~~ 288 (432)
|+||.|.+
T Consensus 97 ~~CGT~Af 104 (590)
T 3nvq_A 97 LACGTNAR 104 (590)
T ss_dssp EEEECTTT
T ss_pred EEeecCCC
Confidence 99999875
Done!