Citrus Sinensis ID: 014041

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
Protein Sequence
MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGNPHHRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcHHHHHHcccEEEHHHccccccccHcHHHcccccccccHcccccccccEEEEEcccccccccccHHHHccHHHHHHHHcccccccccEccccccHHEEHccHHHHHccccccEEEcccccEEEcccccHEcHHHHHccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mmsqdhglsvpstlkgfvqepnsnpnpnpssnqlkrkrnlpgtpdpdaevialspkslMATNRFLCEICNkgfqrdqnlqlhrrghnlpwklkqrtnKEVRkkvyicpekscvhhdpsralgdltgikkhfsrkhgekkwkcekcskkyavQSDWKAhskicgtreyrcdcgtlfsrkdsfiTHRAFCDALAEESARFttisstnpqaaaaipqfSSVFRQQqqsapgselagganlsmssssslprgipkeeeenkaynlsesmtslypsnqsgqQQQQQQQQQQQGLAHMSATALLQKAAQMgstrsnannstgfglmstsfnsfnqtdkNELHkffkqpnqqvadnDQNLNELIMNsfscptnmgavagssNASLLMANAKNASNEAERRLTRDFLgvgvessrplSQQELAKFMNlssqyggnphhrs
Flexible Loop (DISEMBL)
mmsqdhglSVPSTLKgfvqepnsnpnpnpssnqlKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQnlqlhrrghnlpwklkqrtnkeVRKKVYIcpekscvhhdpsralgdltGIKKhfsrkhgekkwkcekcskkyavqsdwkahskicgtreyRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFmnlssqyggnphhrs
Low Complexity Region (SEG)
MMSQDHGLSVPSTLKGFVQEpnsnpnpnpssnQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGekkwkcekcskkYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPqfssvfrqqqqsAPGSELAGGANLsmsssssLPRGIPKEEEENKAYNLSESMTSLYPSNQSGqqqqqqqqqqqqGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGNPHHRS
Disordered region (IsUnstruct)
*******************************************************KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFT*************************************************************************************************************************************************************I***************************************************************************
Disordered Region (DISOPRED)
**SQ*HGLSVPST*********************KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR****V***VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEE***********************************************************************************************************************************************************************************************************FLGVGVESSRPLSQQ********************
Disordered Region (DISEMBL)
*********VPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKK*************EKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSV*************************************NKAYNLSESMTSL***********************MSATALLQ**********NANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSS**********
Disordered Region (DISPRO)
****************************************PGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFT*******************************************************************************************************QMGS************************DKNELHKFFKQPNQQV***********************************************LTRDFLGVGVESSRPLSQQELAKFMN*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGNPHHRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	432	2.2.26 [Sep-21-2011]
Q700D2	503	Zinc finger protein JACKD	yes	no	0.898	0.771	0.478	6e-99
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.361	0.308	0.842	1e-93
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.851	0.789	0.464	1e-92
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.437	0.378	0.318	5e-22
Q943I6	522	Zinc finger protein STOP1	no	no	0.430	0.356	0.315	2e-21
Q2QX40	465	Zinc finger protein STAR3	no	no	0.319	0.296	0.333	3e-19
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.361	0.514	0.323	2e-15
O43313	823	ATM interactor OS=Homo sa	yes	no	0.321	0.168	0.314	5e-13
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.268	0.141	0.315	7e-12
Q61116	645	Zinc finger protein 235 O	no	no	0.266	0.178	0.294	9e-08

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  361 bits (926), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 218/456 (47%), Positives = 262/456 (57%), Gaps = 68/456 (14%)

Query: 31  SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPW 90
           S+  K+KRN PGTPDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 49  SSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 108

Query: 91  KLKQRTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKY 149
           KLKQR+ +EV +KKVYICP K+CVHHD SRALGDLTGIKKH+SRKHGEKKWKCEKCSKKY
Sbjct: 109 KLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKY 168

Query: 150 AVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTT-------IS 202
           AVQSDWKAH+K CGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR ++       IS
Sbjct: 169 AVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVIS 228

Query: 203 STN--------------------------PQAAAAIPQFSSVFRQQQQSAPGSELA---- 232
           +TN                          P   AAI QF   F     +     L+    
Sbjct: 229 TTNLNFGNESNVMNNPNLPHGFVHRGVHHPDINAAISQFGLGFGHDLSAMHAQGLSEMVQ 288

Query: 233 ---------------------GGANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPS 271
                                G     +  +S+ P         ++  + S    +L  S
Sbjct: 289 MASTGNHHLFPSSSSSLPDFSGHHQFQIPMTSTNPSLTLSSSSTSQQTSASLQHQTLKDS 348

Query: 272 NQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTD 331
           + S       + +Q + L+ MSATALLQKAAQMGSTRSN++ +  F    T  +S     
Sbjct: 349 SFSPLFSSSSENKQNKPLSPMSATALLQKAAQMGSTRSNSSTAPSFFAGPTMTSSSATAS 408

Query: 332 KNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAE 391
                       QQ+  N+ N N L  N    P  +  V+ SS  +    + ++  N A+
Sbjct: 409 PPPRSSSPMMIQQQL--NNFNTNVLRENHNRAPPPLSGVSTSSVDNNPFQSNRSGLNPAQ 466

Query: 392 RR-LTRDFLGVGVE------SSRPLSQQELAKFMNL 420
           +  LTRDFLGV  E        RP   QELA+F  L
Sbjct: 467 QMGLTRDFLGVSNEHHPHQTGRRPFLPQELARFAPL 502

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  343 bits (880), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 150/178 (84%), Positives = 163/178 (91%)

Query: 34  LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
           +K+KRNLPG PDP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 40  VKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLK 99

Query: 94  QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 153
           QRT+KEVRK+VY+CPEKSCVHH P+RALGDLTGIKKHF RKHGEKKWKCEKC+K+YAVQS
Sbjct: 100 QRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQS 159

Query: 154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAA 211
           DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+AR    S     AA A
Sbjct: 160 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATA 217

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  340 bits (873), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/424 (46%), Positives = 248/424 (58%), Gaps = 56/424 (13%)

Query: 34  LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
           +K+KRNLPG PDP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 36  VKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLK 95

Query: 94  QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQS 153
           QRT+KEVRK+VY+CPEK+CVHH  SRALGDLTGIKKHF RKHGEKKW CEKC+K+YAVQS
Sbjct: 96  QRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQS 155

Query: 154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIP 213
           DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+A+   +S  N  AAA  P
Sbjct: 156 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAP 215

Query: 214 QFSSV---------------FRQQQQSAPGSE-------LAGGANLSMSSSSSLPRGIPK 251
              ++               F  Q Q+ P           +   +L M    + P+  P 
Sbjct: 216 GSVNLNYQYLMGTFIPPLQPFVPQPQTNPNHHHQHFQPPTSSSLSLWMGQDIAPPQPQP- 274

Query: 252 EEEENKAYNLSESMTSLYPSNQSGQQQ-----------------------QQQQQQQQQG 288
             + +  +  +++ ++   +N +  +Q                        Q Q      
Sbjct: 275 --DYDWVFGNAKAASACIDNNNTHDEQITQNANASLTTTTTLSAPSLFSSDQPQNANANS 332

Query: 289 LAHMSATALLQKAAQMG---STRSNANNSTGFGLMSTSFNSFNQT---DKNE-LHKFFKQ 341
             +MSATALLQKAA++G   +T +  N+ + F L S    S +QT   D  E     F  
Sbjct: 333 NVNMSATALLQKAAEIGATSTTTAATNDPSTF-LQSFPLKSTDQTTSYDSGEKFFALFGS 391

Query: 342 PNQQVADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGV 401
            N     +  + ++ I N+ +  T   A+    N                   TRDFLGV
Sbjct: 392 NNNIGLMSRSHDHQEIENARNDVTVASALDELQNYPWKRRRVDGGGEVGGGGQTRDFLGV 451

Query: 402 GVES 405
           GV++
Sbjct: 452 GVQT 455

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  105 bits (263), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 18/207 (8%)

Query: 44  PDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK---QRTNKE- 99
           P    E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K      + NKE 
Sbjct: 224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKES 283

Query: 100 ------VRKKVYICPEKSC---VHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKY 149
                 +  K Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK+
Sbjct: 284 VPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKF 343

Query: 150 AVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAA 209
           +V +D K H K CG  ++ C CGT FSRKD    H     AL +       +  T P A+
Sbjct: 344 SVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHI----ALFQGHTPAIPLEETKPSAS 399

Query: 210 AAIPQFSSVFRQQQQSAPGSELAGGAN 236
            +  + SS      Q   G  L   +N
Sbjct: 400 TSTQRGSSEGGNNNQGMVGFNLGSASN 426

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 97/206 (47%), Gaps = 20/206 (9%)

Query: 50  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKV----- 104
           V+ L  + ++A +   C IC KGF+RD NL++H RGH   +K      K  +        
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 105 ---YICPEKSCV---HHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSDWKA 157
              Y CP   C     H   + L  +  +K H+ R H +K + C +C +KK++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 158 HSKICGTREYRCDCGTLFSRKDSFITHRAF----CDALAEESARFTTISSTNPQAAAAIP 213
           H K CG  ++ C CGT FSRKD    H A       AL  +  + T  +S  PQ + A+ 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKVTG-ASEQPQGSEAM- 445

Query: 214 QFSSVFRQQQQSAPGSELAGGANLSM 239
             +++      + PGS      NL M
Sbjct: 446 --NTMVGSAGYNFPGSSSDDIPNLDM 469

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 50  VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK-----------LKQRTNK 98
           V+ L    ++A +   C IC KGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 99  EVRKKVYICPEKSCVH---HDPSRALGDLTGIKKHFSRKHGEKKWKCEKC-SKKYAVQSD 154
              ++ Y CP   C     H   + L  +  +K H+ R H EK+  C +C +K+++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAF 187
            K H K CG   + C CGT FSRKD    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 81/173 (46%), Gaps = 17/173 (9%)

Query: 48  AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKK---- 103
           A  I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + +    
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 104 --VYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 159
              Y C E  ++ + H  S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 160 KICGTREYRCDCGTLFSRKDSFITH-RAFCD-------ALAEESARFTTISST 204
           K CG R + C CG+ F  K S   H +AF          L EE A  +++S T
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAFGSGHGPYPTGLFEEQASNSSVSET 300

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 76.3 bits (186), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 41  PGTPDPDA-EVI--ALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQ 94
           P  P P A E+I  ++S  S       LC +  C K       L +H  + H L   +  
Sbjct: 58  PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGI-- 115

Query: 95  RTNKEVRK------KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKK 148
             N  +RK      K Y CP + C    P R     + +K+HF + H EKK KC KCS  
Sbjct: 116 -VNPTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNS 173

Query: 149 YAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFITH 184
           Y  + D K H++ CG + +RC CG  ++ + +  +H
Sbjct: 174 YGTEWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 60/130 (46%), Gaps = 14/130 (10%)

Query: 64  FLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKEVRK------KVYICPEKSCVH 114
            LC +  C K       L +H  + H L   +    N  +RK      K Y CP K C  
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGI---VNPTIRKDLTTAPKFYCCPIKGC-P 135

Query: 115 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTL 174
             P R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  
Sbjct: 136 RGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCP 194

Query: 175 FSRKDSFITH 184
           ++ + +  +H
Sbjct: 195 YASRTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q61116|ZN235_MOUSE Zinc finger protein 235 OS=Mus musculus GN=Znf235 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 24/139 (17%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHN-------------LPWKLKQRTNKEVR--KKVYICP 108
           F C +C K F R  +   H+R H               PW L   +++ V   KK Y C 
Sbjct: 453 FHCSVCGKNFSRSSHFLDHQRIHTGEKPYRCEVCGKRFPWSLSLHSHQSVHTGKKPYKCG 512

Query: 109 EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY 167
           E         +     + ++ H S   GEK +KC  C K+++  S+ +AH ++  G + Y
Sbjct: 513 E-------CGKGFSHASSLQAHHSVHTGEKPFKCNVCQKQFSKTSNLQAHQRVHTGEKPY 565

Query: 168 RCD-CGTLFSRKDSFITHR 185
           +CD CG  FS+K S   H+
Sbjct: 566 KCDTCGKAFSQKSSLQVHQ 584

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
297746237	477	unnamed protein product [Vitis vinifera]	0.935	0.846	0.590	1e-136
297741581	469	unnamed protein product [Vitis vinifera]	0.905	0.833	0.543	1e-124
359481520	490	PREDICTED: zinc finger protein NUTCRACKE	0.930	0.820	0.530	1e-124
255557032	525	nucleic acid binding protein, putative [	0.953	0.784	0.493	1e-120
359478335	527	PREDICTED: uncharacterized protein LOC10	0.965	0.791	0.514	1e-120
255583691	543	nucleic acid binding protein, putative [	0.965	0.767	0.503	1e-115
147783024	474	hypothetical protein VITISV_009698 [Viti	0.821	0.748	0.528	1e-112
224138662	407	predicted protein [Populus trichocarpa]	0.858	0.911	0.525	1e-111
302398705	478	C2H2L domain class transcription factor	0.891	0.805	0.524	1e-110
357472269	714	Zinc finger protein-like protein [Medica	0.898	0.543	0.485	1e-104

>gi|297746237|emb|CBI16293.3| unnamed protein product [Vitis vinifera]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 294/498 (59%), Positives = 350/498 (70%), Gaps = 94/498 (18%)

Query: 2   MSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMAT 61
           M++D GL++PS+++GFVQEPNSNPNPNPS+N +K+KRNLPGTPDP+AEVIALSPKSLMAT
Sbjct: 1   MAED-GLTLPSSIRGFVQEPNSNPNPNPSANPVKKKRNLPGTPDPEAEVIALSPKSLMAT 59

Query: 62  NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL 121
           NRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QRT+KEVRKKVYICPEKSCVHH+P+RAL
Sbjct: 60  NRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYICPEKSCVHHNPTRAL 119

Query: 122 GDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSF 181
           GDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY+CDCGTLFSRKDSF
Sbjct: 120 GDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSF 179

Query: 182 ITHRAFCDALAEESARFTTISSTNP-------------QAAAAIPQFSS----VFRQQQQ 224
           ITHRAFCDALAEESAR T++S+ NP               A  IPQFSS    ++     
Sbjct: 180 ITHRAFCDALAEESARLTSVSAPNPIFRNELMNGSISNPQAHIIPQFSSPRLPLWLDHAN 239

Query: 225 S---------------APGS----ELAGGANLSMS-------------------SSSSLP 246
           S               AP S    E+   A +SM                    +SS+LP
Sbjct: 240 SHLNNPIGVNTNGSFLAPTSAGLPEMVQTAPMSMYGSPASSQNQWLQRCSEASFTSSTLP 299

Query: 247 RGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQKAAQMGS 306
           R + KEEEENK  NLSES+TSL+ SNQ+          QQ+  AHMSATALLQKAAQMGS
Sbjct: 300 R-VLKEEEENKG-NLSESITSLFSSNQN----------QQESSAHMSATALLQKAAQMGS 347

Query: 307 TRSNAN--NSTGFGLM------STSFNSF-NQTDKNELHKFF-KQPNQQVADNDQNLNEL 356
           T+SN+   ++TGFG +      +T F+S+ +    N++HKF  +Q NQ       ++N+L
Sbjct: 348 TKSNSAFFSTTGFGSINSSLSNTTPFSSYPHGRSNNQVHKFLIRQSNQ-----SDSMNQL 402

Query: 357 IMNSFSCPTNM--GAVAGSSNASLLMANAKNASNEAERRLTRDFLGVGVESSRPLSQQEL 414
           I NS S  + M  G + G  N++ L      +SNE ER LTRDFLGVG ++SRP  QQEL
Sbjct: 403 I-NSTSPSSTMGDGLLMGDMNSTPLF---HASSNEVERGLTRDFLGVGSDASRPFLQQEL 458

Query: 415 AKFMNLS-----SQYGGN 427
           AKF ++      SQY GN
Sbjct: 459 AKFASMGSAMGMSQYSGN 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741581|emb|CBI32713.3| unnamed protein product [Vitis vinifera]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/493 (54%), Positives = 307/493 (62%), Gaps = 102/493 (20%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPN---PNPSSNQLKRKRNLPGTPDPDAEVIALSPKS 57
           MMS D   S+PS+++ F Q+P++NPN   P P     K+KRNLPGTPDPDAEVIALSPK+
Sbjct: 3   MMSGDM-FSIPSSIRTFAQDPDANPNNLKPPP-----KKKRNLPGTPDPDAEVIALSPKT 56

Query: 58  LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDP 117
           LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+NKEVRKKVYICPEK+CVHHDP
Sbjct: 57  LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDP 116

Query: 118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSR 177
           SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTLFSR
Sbjct: 117 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSR 176

Query: 178 KDSFITHRAFCDALAEESARFTTISST--------------NPQA-------------AA 210
           KDSFITHRAFCDALAEE AR T++++T              NPQ              AA
Sbjct: 177 KDSFITHRAFCDALAEERARITSVAATNLNFRNDSMNETVINPQPGLLNGFSGRGGPDAA 236

Query: 211 AIPQFSSVFRQQQQSAP-----------GSELAG-------------------GANLSMS 240
            I QF   F       P           GS   G                   GANLS+ 
Sbjct: 237 GISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCNESPWLDKSSATSNGANLSL- 295

Query: 241 SSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQK 300
             +SLP  + KEEE NK  ++ E++TSLY  N S         QQ    A MSATALLQK
Sbjct: 296 --ASLPHAL-KEEEGNKG-SMVETLTSLYSGNHS---------QQSSPAAPMSATALLQK 342

Query: 301 AAQMGSTRSNAN-NSTGFGLM------STSFNSFNQTDKNELHKFFKQPNQQVADNDQNL 353
           AAQMGSTRSN +     FG+M      ST+ N+    ++NELH+ F           Q+ 
Sbjct: 343 AAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTH-NRNELHQVF-------GTGKQHE 394

Query: 354 NELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAERRLTRDFLGV-GVESSRPLSQQ 412
           N +   S S  T     +G     + +      SN  E  LTRDFLG+ G ES RP   Q
Sbjct: 395 NLMATASLSEGT-----SGKQTEPVPL-KLHLGSNSVENSLTRDFLGMGGGESGRPFLPQ 448

Query: 413 ELAKFMNLSSQYG 425
           ELAKF ++ S  G
Sbjct: 449 ELAKFASMGSAMG 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481520|ref|XP_002275477.2| PREDICTED: zinc finger protein NUTCRACKER-like [Vitis vinifera]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 268/505 (53%), Positives = 308/505 (60%), Gaps = 103/505 (20%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPN---PNPSSNQLKRKRNLPGTPDPDAEVIALSPKS 57
           MMS D   S+PS+++ F Q+P++NPN   P P     K+KRNLPGTPDPDAEVIALSPK+
Sbjct: 1   MMSGDM-FSIPSSIRTFAQDPDANPNNLKPPP-----KKKRNLPGTPDPDAEVIALSPKT 54

Query: 58  LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDP 117
           LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+NKEVRKKVYICPEK+CVHHDP
Sbjct: 55  LMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDP 114

Query: 118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSR 177
           SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTLFSR
Sbjct: 115 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSR 174

Query: 178 KDSFITHRAFCDALAEESARFTTISST--------------NPQA-------------AA 210
           KDSFITHRAFCDALAEE AR T++++T              NPQ              AA
Sbjct: 175 KDSFITHRAFCDALAEERARITSVAATNLNFRNDSMNETVINPQPGLLNGFSGRGGPDAA 234

Query: 211 AIPQFSSVFRQQQQSAP-----------GSELAG-------------------GANLSMS 240
            I QF   F       P           GS   G                   GANLS+ 
Sbjct: 235 GISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCNESPWLDKSSATSNGANLSL- 293

Query: 241 SSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQK 300
             +SLP  + KEEE NK  ++ E++TSLY  N S         QQ    A MSATALLQK
Sbjct: 294 --ASLPHAL-KEEEGNKG-SMVETLTSLYSGNHS---------QQSSPAAPMSATALLQK 340

Query: 301 AAQMGSTRSNAN-NSTGFGLM------STSFNSFNQTDKNELHKFFKQPNQQVADNDQNL 353
           AAQMGSTRSN +     FG+M      ST+ N+    ++NELH+ F    Q   +N    
Sbjct: 341 AAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTH-NRNELHQVFGTGKQH--ENLMAT 397

Query: 354 NELIMNSFSCPTNMGAVAGSSNASLLMANAKN------------ASNEAERRLTRDFLGV 401
             L     +        + S+N + +M                  SN  E  LTRDFLG+
Sbjct: 398 ASLSEGVLAGSGLSSLTSTSNNLAQMMMQTSGKQTEPVPLKLHLGSNSVENSLTRDFLGM 457

Query: 402 -GVESSRPLSQQELAKFMNLSSQYG 425
            G ES RP   QELAKF ++ S  G
Sbjct: 458 GGGESGRPFLPQELAKFASMGSAMG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557032|ref|XP_002519549.1| nucleic acid binding protein, putative [Ricinus communis] gi|223541412|gb|EEF42963.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 267/541 (49%), Positives = 319/541 (58%), Gaps = 129/541 (23%)

Query: 1   MMSQDH--GLSVPSTLKGFV----QEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALS 54
           MMS  H    S+PS+L GF     Q+  +       ++  K+KRNLPGTPDPDAEVIALS
Sbjct: 1   MMSGGHHDAFSIPSSLPGFAHLDQQQNANPNPKPNPNSAAKKKRNLPGTPDPDAEVIALS 60

Query: 55  PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVH 114
           PK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV+KKVYICPEK+CVH
Sbjct: 61  PKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVKKKVYICPEKTCVH 120

Query: 115 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTL 174
           HD SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTL
Sbjct: 121 HDASRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTL 180

Query: 175 FSRKDSFITHRAFCDALAEESARFTTISSTN------------PQAA--------AAIPQ 214
           FSRKDSFITHRAFCDALAEESARF +    N            P  A        A+I Q
Sbjct: 181 FSRKDSFITHRAFCDALAEESARFNSAPPANLNFRNENSVVNLPHGAPGHGVQDIASISQ 240

Query: 215 FS-SVFR-----------QQQQSA--------------PGSELA---------------- 232
           FS S FR            QQ+ A              P   +A                
Sbjct: 241 FSTSTFRSDVNAMTCVSSDQQKPAGLSLWLNQVNSHMNPADTVANNSSLYASSNSTGLPE 300

Query: 233 ----GGANLSMSSS---------SSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQ 279
               G +NL  SSS         S LP G+ +EE  +K  N+++S+ SLY  N       
Sbjct: 301 MVQIGSSNLYGSSSATNFGNLTLSGLPHGLKEEEGGDKRTNMTDSLPSLYSDN------- 353

Query: 280 QQQQQQQQGLAHMSATALLQKAAQMGSTRSN----ANNSTGFGLM-------STSFNSFN 328
             Q +Q + +A MSATALLQKAAQMGSTRS+       S+ +GLM       +T+  +  
Sbjct: 354 -HQNKQSKPVAPMSATALLQKAAQMGSTRSSNQSFFGGSSNYGLMSSSSSSSNTTNLNSL 412

Query: 329 QTDKNELHKFFKQPNQQVADNDQNLNELIMNSFSCPTNMG------AVAGSSNASLLMAN 382
           + ++NELH+ F+  N+Q   N        + + SC   MG      A +G     L+ ++
Sbjct: 413 RQNRNELHQVFQNVNKQQESN--------LTASSCSMPMGDAIMIAASSGLDQVVLMQSS 464

Query: 383 AKNA----------SNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLS-----SQYGGN 427
            K +          S   E  LTRDFLG+  +S RP   QE+AKF ++S     SQ+ GN
Sbjct: 465 GKQSDPVQLKLQPGSTSLESGLTRDFLGMSGQSGRPFLPQEIAKFASMSAVMGLSQFTGN 524

Query: 428 P 428
           P
Sbjct: 525 P 525

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478335|ref|XP_002282251.2| PREDICTED: uncharacterized protein LOC100248459 [Vitis vinifera]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 276/536 (51%), Positives = 337/536 (62%), Gaps = 119/536 (22%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMA 60
           MM++D GL++PS+++GFVQEPNSNPNPNPS+N +K+KRNLPGTPDP+AEVIALSPKSLMA
Sbjct: 1   MMAED-GLTLPSSIRGFVQEPNSNPNPNPSANPVKKKRNLPGTPDPEAEVIALSPKSLMA 59

Query: 61  TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRA 120
           TNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+QRT+KEVRKKVYICPEKSCVHH+P+RA
Sbjct: 60  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYICPEKSCVHHNPTRA 119

Query: 121 LGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDS 180
           LGDLTGIKKH+SRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY+CDCGTLFSRKDS
Sbjct: 120 LGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDS 179

Query: 181 FITHRAFCDALAEESARFTTISSTNP-------------QAAAAIPQFSSVFRQQQQSAP 227
           FITHRAFCDALAEESAR T++S+ NP               A  IPQFSSVFR +     
Sbjct: 180 FITHRAFCDALAEESARLTSVSAPNPIFRNELMNGSISNPQAHIIPQFSSVFRPE---FV 236

Query: 228 GSELAGGANLSMSSSSSLPRGI---------PKEEEENKAY------NLSESM----TSL 268
           GSE   G   +      LP  +         P     N ++       L E +     S+
Sbjct: 237 GSEQLVGHLNADGQKPRLPLWLDHANSHLNNPIGVNTNGSFLAPTSAGLPEMVQTAPMSM 296

Query: 269 YPSNQSGQQQQQQ-----------------QQQQQQGLAHMSATALL-------QKAAQM 304
           Y S  S Q Q  Q                 ++++ +G    S T+L        + +A M
Sbjct: 297 YGSPASSQNQWLQRCSEASFTSSTLPRVLKEEEENKGNLSESITSLFSSNQNQQESSAHM 356

Query: 305 ------------GSTRSNAN--NSTGFGLM------STSFNSF-NQTDKNELHKFF-KQP 342
                       GST+SN+   ++TGFG +      +T F+S+ +    N++HKF  +Q 
Sbjct: 357 SATALLQKAAQMGSTKSNSAFFSTTGFGSINSSLSNTTPFSSYPHGRSNNQVHKFLIRQS 416

Query: 343 NQQVADNDQNLNELIMNSFSCPTNM--GAVAGSSNASLLMANAKN--------------- 385
           NQ       ++N+LI NS S  + M  G + G  N++ L+  AKN               
Sbjct: 417 NQ-----SDSMNQLI-NSTSPSSTMGDGLLMGDMNSTPLVDTAKNNMDHFLMVPSNPKQA 470

Query: 386 ---------ASNEAERRLTRDFLGVGVESSRPLSQQELAKFMNLS-----SQYGGN 427
                    +SNE ER LTRDFLGVG ++SRP  QQELAKF ++      SQY GN
Sbjct: 471 QQIAGKFHASSNEVERGLTRDFLGVGSDASRPFLQQELAKFASMGSAMGMSQYSGN 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583691|ref|XP_002532599.1| nucleic acid binding protein, putative [Ricinus communis] gi|223527655|gb|EEF29765.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 272/540 (50%), Positives = 313/540 (57%), Gaps = 123/540 (22%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQ-LKRKRNLPGTPDPDAEVIALSPKSLM 59
           MM +D G S+PST+ GFVQEP +NPNPNP+SN  +K+KRNLPGTPDPDAEV+ALSPKSLM
Sbjct: 1   MMPED-GFSIPSTIIGFVQEPTTNPNPNPTSNPVMKKKRNLPGTPDPDAEVVALSPKSLM 59

Query: 60  ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSR 119
           ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQR+ KEV+KKVYICPEKSCVHHDPSR
Sbjct: 60  ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSTKEVKKKVYICPEKSCVHHDPSR 119

Query: 120 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKD 179
           ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKD
Sbjct: 120 ALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKD 179

Query: 180 SFITHRAFCDALAEESARFTTISST--------------------NPQAAAAIPQFSSVF 219
           SFITHRAFCDALAEES RFT +S+                            I QFSSVF
Sbjct: 180 SFITHRAFCDALAEESGRFTPVSAAINANLRNDLINGANSINLPPPHHQTTVISQFSSVF 239

Query: 220 RQQQQSAPGSELAGGANLSMSSSS-SLPRGIPKEEEENKAYNLSESMTSLYPSN------ 272
           R +  +   SEL G  NL +      LP  +     +     +  +  S  P        
Sbjct: 240 RPEFGTTTASELLGSNNLGVDVQKPRLPIWLDNANPQLNPIGVGSNANSFLPHELVQTQQ 299

Query: 273 ----QSGQQQQQQQQQQQQGL--------------------------------------- 289
                SG  Q Q   + Q+GL                                       
Sbjct: 300 INMFGSGSSQLQWLSKYQEGLFTGSLPRGLKEEEGSKGDLTESITSLYSSNHHHQQQRSS 359

Query: 290 ------AHMSATALLQKAAQMGSTR--SNANNSTGFGLMSTSFNSFNQTDKN-ELHKFF- 339
                 AHMSATALLQKAAQMGSTR  ++ +  +      ++FNS+NQ   N E  KF  
Sbjct: 360 LSSSSSAHMSATALLQKAAQMGSTRSNNSISLMSSSLSNVSNFNSYNQRKNNDETLKFLS 419

Query: 340 -KQPNQQVADNDQNLNEL---IMNSFSCP----TNMGAVAGSSNASLLMANAKN------ 385
            +QP  Q     +NLNEL   I  S + P    T    + G SN+S ++ + +N      
Sbjct: 420 SRQPINQA----ENLNELANSISPSGTTPAATFTKESTLLGDSNSSSVLTSTRNNTTKHW 475

Query: 386 -------------------ASNE-AERRLTRDFLGVG---VESSRPLSQQELAKFMNLSS 422
                              +S+E  E  LTRDFLGVG     S  P  Q EL KF ++ S
Sbjct: 476 NHLIMQQQANGDQQNHGFISSDEVVEGSLTRDFLGVGAAEAASRAPFLQHELVKFASIGS 535

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783024|emb|CAN61309.1| hypothetical protein VITISV_009698 [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/467 (52%), Positives = 281/467 (60%), Gaps = 112/467 (23%)

Query: 45  DPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKV 104
           DPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+NKEVRKKV
Sbjct: 26  DPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKV 85

Query: 105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGT 164
           YICPEK+CVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGT
Sbjct: 86  YICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGT 145

Query: 165 REYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISST--------------NPQA-- 208
           REY+CDCGTLFSRKDSFITHRAFCDALAEE AR T++++T              NPQ   
Sbjct: 146 REYKCDCGTLFSRKDSFITHRAFCDALAEERARITSVAATNLNFRNDSMNETVINPQPGL 205

Query: 209 -----------AAAIPQFSSVFRQQQQSAP-----------GSELAG------------- 233
                      AA I QF   F       P           GS   G             
Sbjct: 206 LNGFSGRGGPDAAGISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCNESPWLDK 265

Query: 234 ------GANLSMSSSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQ 287
                 GANLS+   +SLP  + KEEE NK  ++ E++TSLY  N S         QQ  
Sbjct: 266 SSATSNGANLSL---ASLPHAL-KEEEGNKG-SMVETLTSLYSGNHS---------QQSS 311

Query: 288 GLAHMSATALLQKAAQMGSTRSNAN-NSTGFGLM------STSFNSFNQTDKNELHKFFK 340
             A MSATALLQKAAQMGSTRSN +     FG+M      ST+ N+    ++NELH+ F 
Sbjct: 312 PAAPMSATALLQKAAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTH-NRNELHQVF- 369

Query: 341 QPNQQVADNDQNLNELIMNSFSCPTNMGAVAG----------SSNASLLMANAKN----- 385
                     Q+ N +   S S     G +AG          ++ A ++M  +       
Sbjct: 370 ------GTGKQHENLMATASLS----EGVLAGSXLSSLTSTSNNLAQMMMQTSGKQTEPV 419

Query: 386 ------ASNEAERRLTRDFLGV-GVESSRPLSQQELAKFMNLSSQYG 425
                  SN  E  LTRDFLG+ G ES RP   QELAKF ++ S  G
Sbjct: 420 PLKLHLGSNSVENSLTRDFLGMGGGESGRPFLPQELAKFASMGSAMG 466

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138662|ref|XP_002322870.1| predicted protein [Populus trichocarpa] gi|222867500|gb|EEF04631.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/455 (52%), Positives = 275/455 (60%), Gaps = 84/455 (18%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMA 60
           MMS D   S+PS + GF Q+ N+       +   KRKRNLPGTPDPDAEVIALSPK+LMA
Sbjct: 3   MMSGD-AFSLPSLIAGFAQDQNNANPKPNPNPVAKRKRNLPGTPDPDAEVIALSPKTLMA 61

Query: 61  TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRA 120
           TNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK+CVHHD SRA
Sbjct: 62  TNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKTCVHHDSSRA 121

Query: 121 LGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDS 180
           LGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK CGTREY+CDCGTLFSRKDS
Sbjct: 122 LGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDS 181

Query: 181 FITHRAFCDALAEESARFTTISSTNPQAAAAIPQFSSVFRQQQQSAPGSELAGGANLSMS 240
           FITHRAFCDALA+ESAR T++  T+             FR                   +
Sbjct: 182 FITHRAFCDALADESARITSVQDTDLN-----------FR-------------------N 211

Query: 241 SSSSLPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSATALLQK 300
            + +LP G            +S+      P + SG                MSATALLQK
Sbjct: 212 DTVNLPHGFSNRPGVPDIAGISQFSAGFRP-DFSGMTA-----------VPMSATALLQK 259

Query: 301 AAQMGSTRSNA---NNSTGFGLM--------STSFNSFNQTDKNELHKFF---KQPNQQ- 345
           AAQMGSTRSN     NS  +GLM        +T+  S NQ + NEL+  F   KQP  + 
Sbjct: 260 AAQMGSTRSNQPFFGNS--YGLMSSSSSSSPTTNPISLNQ-NPNELYHVFQNVKQPASES 316

Query: 346 -------------VADNDQNLNELIMNSFSCPTNMGAVAGSSNASLLMANAKNASNEAER 392
                        V     NL++L+M +          +G+          +  SN  E 
Sbjct: 317 LTATYNSVAMSDAVMGTSSNLDQLVMQT----------SGNLQNDPTQLKLQRGSNSTES 366

Query: 393 RLTRDFLGVGVESSRPLSQQELAKFMNLSSQYGGN 427
            LTRDFLG+  ES R     +LAKF ++SS    N
Sbjct: 367 GLTRDFLGMSSESGRLFLPHDLAKFASISSAMSSN 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398705|gb|ADL36647.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 266/507 (52%), Positives = 310/507 (61%), Gaps = 122/507 (24%)

Query: 1   MMSQDHGLSVPSTLKGFVQEPNSNPNPNPSSN-QLKRKRNLPGTPDPDAEVIALSPKSLM 59
           MMS+D  L VPS + GF QEP+S+PNPNP++N QLKRKR+LPGTPDPDAEVIA+SPKSLM
Sbjct: 1   MMSEDARL-VPSIITGFSQEPDSSPNPNPNTNNQLKRKRSLPGTPDPDAEVIAMSPKSLM 59

Query: 60  ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEV-RKKVYICPEKSCVHHDPS 118
           ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+  EV RKKVY+CPEK+CVHH+PS
Sbjct: 60  ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKTEVIRKKVYVCPEKTCVHHEPS 119

Query: 119 RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRK 178
           RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSK+CGTREYRCDCGTLFSRK
Sbjct: 120 RALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGTREYRCDCGTLFSRK 179

Query: 179 DSFITHRAFCDAL-AEESARFTTISSTN-----------------PQAAAAIPQFSSVFR 220
           DSFITHRAFCDAL AE+SARF +  +TN                 PQ    IP F  +F 
Sbjct: 180 DSFITHRAFCDALAAEQSARFCSAPTTNNINPSFMNGSIANNTHKPQ---RIPHFIPMF- 235

Query: 221 QQQQSAPGSELAGGANLSM-----------------SSSSS------------------- 244
            Q + A    LA   +LS                  SSSSS                   
Sbjct: 236 -QPEFAGSDHLAANNHLSSNAFIPEMLQTASMDMFGSSSSSQMQWLINNNKFVEESSFAN 294

Query: 245 ----------LPRGIPKEEEENKAYNLSESMTSLYPSNQSGQQQQQQQQQQQQGLAHMSA 294
                     L RG+ KE+EE+K  + SE++++   +N S       +Q        MSA
Sbjct: 295 ANSLSMSSPSLLRGVLKEDEESKG-SFSETISTT--TNTSFYTNNNNKQNHHHHHQPMSA 351

Query: 295 TALLQKAAQMGSTRSNANNSTGFGLMSTSFNSFNQTDKNELHKFFKQPNQQVADNDQNLN 354
           TALLQKAA+MGST SN NN       +T+FN                      D   N N
Sbjct: 352 TALLQKAARMGSTTSNNNNP------ATTFN----------------------DTTLNFN 383

Query: 355 ELIMNSFSCPTNMGAVA--GS---SNASLLM-----ANAKNASNEAERRLTRDFLGVGVE 404
           +++ NS S  +  GA    GS   SN  L+M     A  K  ++E +  LTRDFLGVG  
Sbjct: 384 DMV-NSTSSSSTQGATIEDGSLFLSNKHLMMPAGAAAMTKQGTSE-QSSLTRDFLGVGGG 441

Query: 405 SSR-----PLSQQELAKFMNLS--SQY 424
            +      P  QQELAK  ++S  SQY
Sbjct: 442 DAIFGGGVPFFQQELAKLASMSDLSQY 468

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472269|ref|XP_003606419.1| Zinc finger protein-like protein [Medicago truncatula] gi|355507474|gb|AES88616.1| Zinc finger protein-like protein [Medicago truncatula]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 249/513 (48%), Positives = 306/513 (59%), Gaps = 125/513 (24%)

Query: 18  VQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQ 77
           VQ  N NPNP PS    K+KRNLPGTPDP++EV+A+SPKSLMATNRFLCEICNKGFQRDQ
Sbjct: 25  VQHSNPNPNPVPS----KKKRNLPGTPDPESEVVAMSPKSLMATNRFLCEICNKGFQRDQ 80

Query: 78  NLQLHRRGHNLPWKLKQRTNKE-VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG 136
           NLQLHRRGHNLPWKLKQR NK+ +RKKVY+CPEK+CVHH+PSRALGDLTGIKKH+SRKHG
Sbjct: 81  NLQLHRRGHNLPWKLKQRANKDQIRKKVYVCPEKTCVHHEPSRALGDLTGIKKHYSRKHG 140

Query: 137 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSR--------------KDSFI 182
           EKKWKCEKCSKKYAVQSDWKAHSKICGTREY+CDCGT+FS               KDSFI
Sbjct: 141 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSSCGQCNRKRSFDMVGKDSFI 200

Query: 183 THRAFCDALAEESARFTTI-------------SSTNPQAAAAIP--QFSSVFRQQQQSAP 227
           THRAFCDAL E+SA+ TT+             ++  P+     P  QF S F     SA 
Sbjct: 201 THRAFCDALTEQSAKITTVPAALSNFRNDHLTNTQTPRIPHIFPGFQFHSEF---VNSAT 257

Query: 228 GSE--LAGGANLSM------------------------SSSSSLP--RGIPK-EEEENKA 258
            SE  L    N+S                         +++ SLP   G+ K E+EENK 
Sbjct: 258 SSEPPLGNYTNISQLHQNSDIMQTMDVFGSQPQWLNYNNANLSLPMLHGVMKQEQEENK- 316

Query: 259 YNLSES-MTSLYPSNQSGQQQQQQQQQQQQGLAHMSA-TALLQKAAQMGSTRSNANNSTG 316
            +LS S ++SLY S       + Q Q QQ+   H+S  T+LLQK +QMGSTR+   N   
Sbjct: 317 -DLSASVISSLYLS-------RSQNQNQQEAPNHLSVTTSLLQKESQMGSTRTIITNDN- 367

Query: 317 FGLMSTSFNSFNQTD-KNELHKFFKQPNQQVADNDQNLNELI-MNSFSCPTNMGA----- 369
               +T FN+ N     +E+ KF+   N+Q     + LNEL+ +   +  TN+G      
Sbjct: 368 ----NTVFNNLNHFHIVHEVQKFY---NKQCE--SEELNELVNLEGSNSSTNLGGGYLLN 418

Query: 370 ----VAGSSNAS-----LLMANAKNASN------------EAERRLTRDFLGVGVES--S 406
               + G  N +     ++++  K  +N            + +   TRDFLGVG +   S
Sbjct: 419 DSNNMFGIVNGTKDLDHVVLSVDKETTNRQMYDSGSRSKEKNQMGFTRDFLGVGEDDSMS 478

Query: 407 RPLSQQELAKF-------MNLSSQYGGNPHHRS 432
           RP  QQEL +F        NL SQY GN H+ S
Sbjct: 479 RPFLQQELGEFNGMGSLGNNLQSQY-GNGHYWS 510

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	432
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.388	0.336	0.815	6.7e-90
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.465	0.450	0.726	9e-90
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.398	0.341	0.780	1.7e-88
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.398	0.285	0.761	1.2e-87
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.412	0.351	0.786	5.7e-86
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.377	0.360	0.815	4.1e-85
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.416	0.386	0.766	3.5e-84
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.409	0.343	0.717	1.2e-83
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.395	0.425	0.779	1.5e-81
TAIR|locus:2204503	467	AT1G14580 "AT1G14580" [Arabido	0.393	0.364	0.764	4.1e-77

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 6.7e-90, Sum P(4) = 6.7e-90
 Identities = 137/168 (81%), Positives = 147/168 (87%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRNLPG PDPDAEVIALSPK+LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct:    32 KKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 91

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             R+ KEVRKKVY+CP   CVHHDPSRALGDLTGIKKHF RKHG            YAVQSD
Sbjct:    92 RSTKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSD 151

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTIS 202
             WKAHSKICGT+EY+CDCGTLFSR+DSFITHRAFCDALAEESA+  T S
Sbjct:   152 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAKNHTQS 199

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 149/205 (72%), Positives = 161/205 (78%)

Query:     1 MMSQDHG-LSVPSTL--KGFVQEXXXXXXXXXXXXQLKRKRNLPGTPDPDAEVIALSPKS 57
             MM  DH  LS PS +  +  +                KRKRNLPG PDPDAEVIALSP S
Sbjct:     2 MMPDDHHPLSFPSYVLHQEHIAPNPNPNPNPTSSNSAKRKRNLPGNPDPDAEVIALSPNS 61

Query:    58 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKE-VRKKVYICPEKSCVHHD 116
             LM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKLKQRTNKE V+KKVYICPEK+CVHHD
Sbjct:    62 LMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHD 121

Query:   117 PSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYRCDCGTLFS 176
             P+RALGDLTGIKKHFSRKHG            YAV SDWKAHSKICGT+EYRCDCGTLFS
Sbjct:   122 PARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFS 181

Query:   177 RKDSFITHRAFCDALAEESARFTTI 201
             RKDSFITHRAFCDALAEESARF ++
Sbjct:   182 RKDSFITHRAFCDALAEESARFVSV 206

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 746 (267.7 bits), Expect = 1.7e-88, Sum P(2) = 1.7e-88
 Identities = 135/173 (78%), Positives = 150/173 (86%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRN PGTPDPDA+VIALSP +LMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query:    95 RTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             R+ +EV +KKVYICP K+CVHHD SRALGDLTGIKKH+SRKHG            YAVQS
Sbjct:   113 RSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQS 172

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNP 206
             DWKAH+K CGTREY+CDCGTLFSRKDSFITHRAFCDAL EE AR +++S+ NP
Sbjct:   173 DWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNP 225

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 1.2e-87, Sum P(2) = 1.2e-87
 Identities = 131/172 (76%), Positives = 148/172 (86%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRN P TP+ DAEVIALSPK+LMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    52 KKKRNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQ 111

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++ KEV++KVY+CPE SCVHHDPSRALGDLTGIKKH+ RKHG            YAVQSD
Sbjct:   112 KSTKEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSD 171

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNP 206
             WKAHSK CGT+EYRCDCGTLFSR+DSFITHRAFCDALA+ESAR  T  ++ P
Sbjct:   172 WKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTSLTSLP 223

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 5.7e-86, Sum P(2) = 5.7e-86
 Identities = 140/178 (78%), Positives = 151/178 (84%)

Query:    34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
             +K+KRNLPG PDP+AEVIALSPK+LMATNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLK
Sbjct:    40 VKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLK 99

Query:    94 QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             QRT+KEVRK+VY+CPEKSCVHH P+RALGDLTGIKKHF RKHG            YAVQS
Sbjct:   100 QRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQS 159

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAA 211
             DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+AR    S     AA A
Sbjct:   160 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNAASHLKSFAATA 217

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 4.1e-85, Sum P(3) = 4.1e-85
 Identities = 133/163 (81%), Positives = 148/163 (90%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KRNLPG PDP++EVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL+Q
Sbjct:    34 KKKRNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQ 93

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++NKEV+KKVY+CPE SCVHHDPSRALGDLTGIKKHF RKHG            YAVQSD
Sbjct:    94 KSNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSD 153

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESAR 197
             WKAHSKICGT+EY+CDCGTLFSR+DSFITHRAFCDALAEE+AR
Sbjct:   154 WKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENAR 196

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
 Identities = 138/180 (76%), Positives = 152/180 (84%)

Query:    34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLK 93
             +K+KRNLPG PDP+AEVIALSP +LMATNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLK
Sbjct:    36 VKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLK 95

Query:    94 QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             QRT+KEVRK+VY+CPEK+CVHH  SRALGDLTGIKKHF RKHG            YAVQS
Sbjct:    96 QRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQS 155

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAAIP 213
             DWKAHSK CGTREYRCDCGT+FSR+DSFITHRAFCDALAEE+A+   +S  N  AAA  P
Sbjct:   156 DWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHLNGLAAAGAP 215

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
 Identities = 127/177 (71%), Positives = 153/177 (86%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K++RN PG P+PDAEV+ALSPK+LMATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    54 KKRRNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQ 113

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++ KEV++KVY+CPE +CVHHDPSRALGDLTGIKKH+ RKHG            YAVQSD
Sbjct:   114 KSTKEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSD 173

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTNPQAAAA 211
             WKAHSK CGT+EYRCDCGT+FSR+DS+ITHRAFCDAL +E+AR  T+S T+  AA++
Sbjct:   174 WKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETARNPTVSFTSMTAASS 230

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 1.5e-81, Sum P(3) = 1.5e-81
 Identities = 134/172 (77%), Positives = 147/172 (85%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K+KR LPG PDPDAEVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKKRGLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 112

Query:    95 RTNKEV-RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQS 153
             +  KE  +KKVY+CPE +C HH PSRALGDLTGIKKHF RKHG            YAVQS
Sbjct:   113 KNTKEQQKKKVYVCPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQS 172

Query:   154 DWKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISSTN 205
             DWKAH+KICGTR+YRCDCGTLFSRKD+FITHRAFCDALAEESAR  + SS+N
Sbjct:   173 DWKAHTKICGTRDYRCDCGTLFSRKDTFITHRAFCDALAEESARLHSTSSSN 224

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2204503 AT1G14580 "AT1G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 4.1e-77, Sum P(2) = 4.1e-77
 Identities = 130/170 (76%), Positives = 149/170 (87%)

Query:    35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQ 94
             K++RN PG P+PDAEVIALSPK++MATNRFLCE+CNKGFQR+QNLQLHRRGHNLPWKLKQ
Sbjct:    53 KKRRNQPGNPNPDAEVIALSPKTIMATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQ 112

Query:    95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSD 154
             ++NKEVR+KVY+CPE SCVHHDP+RALGDLTGIKKH+ RKHG            YAVQSD
Sbjct:   113 KSNKEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSD 172

Query:   155 WKAHSKICGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARFTTISST 204
             WKAHSK CGT+EYRCDCGT+FSR+DS+ITHRAFCDAL +ESAR  T+S T
Sbjct:   173 WKAHSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQESARNPTVSFT 222

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024511001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (526 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	432
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.95
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.91
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.76
KOG3576	267	consensus Ovo and related transcription factors [T	99.76
KOG3608	467	consensus Zn finger proteins [General function pre	99.7
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.69
KOG3576	267	consensus Ovo and related transcription factors [T	99.64
KOG3608	467	consensus Zn finger proteins [General function pre	99.56
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.48
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.48
PLN03086	567	PRLI-interacting factor K; Provisional	99.25
PHA00733	128	hypothetical protein	99.1
PLN03086	567	PRLI-interacting factor K; Provisional	99.1
PHA00733	128	hypothetical protein	98.95
KOG3993	500	consensus Transcription factor (contains Zn finger	98.94
PHA02768	55	hypothetical protein; Provisional	98.63
PHA02768	55	hypothetical protein; Provisional	98.52
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.46
KOG3993	500	consensus Transcription factor (contains Zn finger	98.32
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.17
PHA00616	44	hypothetical protein	98.09
PHA00732	79	hypothetical protein	97.96
PHA00616	44	hypothetical protein	97.85
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.85
PHA00732	79	hypothetical protein	97.84
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.83
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.82
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.71
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.5
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.35
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.34
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.26
COG5048	467	FOG: Zn-finger [General function prediction only]	97.23
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	97.08
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.65
smart00355	26	ZnF_C2H2 zinc finger.	96.64
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.64
KOG1146	1406	consensus Homeobox protein [General function predi	96.51
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.42
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.27
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.24
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.1
PRK04860	160	hypothetical protein; Provisional	95.82
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.48
COG5048	467	FOG: Zn-finger [General function prediction only]	95.44
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	95.2
PRK04860	160	hypothetical protein; Provisional	94.86
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.38
KOG1146	1406	consensus Homeobox protein [General function predi	93.96
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.93
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	93.69
smart00355	26	ZnF_C2H2 zinc finger.	93.6
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.48
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	93.46
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.45
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.42
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	93.11
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.1
KOG1280	381	consensus Uncharacterized conserved protein contai	92.95
KOG3982	475	consensus Runt and related transcription factors [	92.8
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	92.38
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.36
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	92.32
KOG4377	480	consensus Zn-finger protein [General function pred	89.72
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	89.69
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	89.53
KOG2071	579	consensus mRNA cleavage and polyadenylation factor	86.65
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	86.04
KOG2893	341	consensus Zn finger protein [General function pred	85.7
KOG1280	381	consensus Uncharacterized conserved protein contai	85.49
KOG2893	341	consensus Zn finger protein [General function pred	85.35
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	85.2
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	85.09
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	84.93
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	84.23
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	83.31
KOG2186	276	consensus Cell growth-regulating nucleolar protein	82.01
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.79
KOG3982	475	consensus Runt and related transcription factors [	81.43
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	80.94
COG4049	65	Uncharacterized protein containing archaeal-type C	80.88
KOG1883	1517	consensus Cofactor required for Sp1 transcriptiona	80.6

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.95  E-value=1.5e-28  Score=228.32  Aligned_cols=135  Identities=21%  Similarity=0.395  Sum_probs=127.4

Q ss_pred             CCCCcCCCCCCCCCCChhhhhcCccccCC---CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           32 NQLKRKRNLPGTPDPDAEVIALSPKSLMA---TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        32 ~~~k~~c~~cg~~~~~~~~l~~h~~~h~~---~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      ...+|+|+.|||.|.+...|.+|+.+|-.   .+.|.|++|||.|..-..|+.|+|+|+               -+++|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~  191 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECG  191 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccc
Confidence            46699999999999999999999999853   677999999999999999999999997               469999


Q ss_pred             CCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchHHHHHHH
Q 014041          109 EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRA  186 (432)
Q Consensus       109 ~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~L~~H~~  186 (432)
                      +|       ||.|.+.+-|..|+|+|+|||||.|..|+|.|..+++|+.||++ .+.|+|.|. |+|+|..++.|.+|..
T Consensus       192 iC-------GKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 IC-------GKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             cc-------cccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            99       99999999999999999999999999999999999999999999 789999999 9999999999999987


Q ss_pred             Hh
Q 014041          187 FC  188 (432)
Q Consensus       187 ~h  188 (432)
                      ..
T Consensus       265 S~  266 (279)
T KOG2462|consen  265 SA  266 (279)
T ss_pred             hc
Confidence            53

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.91  E-value=5.1e-25  Score=204.82  Aligned_cols=133  Identities=23%  Similarity=0.383  Sum_probs=125.8

Q ss_pred             CCCCCCCCCcCcCCCCCCCCCCCCC---CCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHH
Q 014041            7 GLSVPSTLKGFVQEPNSNPNPNPSS---NQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHR   83 (432)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~   83 (432)
                      .+.|++|+|.+.-.-++..|...|.   ..+-+.|+.|||.|.....|+.|+++|+  -+++|.+|||.|.+...|+-|+
T Consensus       130 r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHi  207 (279)
T KOG2462|consen  130 RYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHI  207 (279)
T ss_pred             ceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccc
Confidence            5899999999998888888886664   4678999999999999999999999998  6799999999999999999999


Q ss_pred             HhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041           84 RGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus        84 r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      |+|+             |||||.|+.|       +|+|.++++|+.||++|.+.|+|+|..|+|.|.+++.|.+|...
T Consensus       208 RTHT-------------GEKPF~C~hC-------~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES  265 (279)
T KOG2462|consen  208 RTHT-------------GEKPFSCPHC-------GKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES  265 (279)
T ss_pred             cccc-------------CCCCccCCcc-------cchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence            9999             9999999999       99999999999999999999999999999999999999999876

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.76  E-value=6.1e-20  Score=191.22  Aligned_cols=80  Identities=20%  Similarity=0.469  Sum_probs=71.9

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcccCCcc-----eeec----CCCc
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTRE-----YRCD----CGTL  174 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k~-----~~C~----C~~~  174 (432)
                      +-.|-+|       -|.+..++.|+.|+|+|+|||||+|.+|++.|.++.+|+.||-+|.-+|     |.|.    |-+.
T Consensus       605 PNqCiiC-------~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~k  677 (958)
T KOG1074|consen  605 PNQCIIC-------LRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKK  677 (958)
T ss_pred             ccceeee-------eecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCccccccccCCchhhhccc
Confidence            4567777       9999999999999999999999999999999999999999999976554     7785    8899


Q ss_pred             cCCchHHHHHHHHhcc
Q 014041          175 FSRKDSFITHRAFCDA  190 (432)
Q Consensus       175 F~~~~~L~~H~~~h~~  190 (432)
                      |...-.|..|++.|..
T Consensus       678 ftn~V~lpQhIriH~~  693 (958)
T KOG1074|consen  678 FTNAVTLPQHIRIHLG  693 (958)
T ss_pred             ccccccccceEEeecC
Confidence            9999999999999864

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.76  E-value=9.6e-19  Score=155.36  Aligned_cols=115  Identities=23%  Similarity=0.531  Sum_probs=106.2

Q ss_pred             CCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      .+...|.|.+|+|.|.....|.+|++.|+             ..|.|.|..|       ||.|.+...|++|+|+|+|.+
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~c-------gkgfndtfdlkrh~rthtgvr  172 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFC-------GKGFNDTFDLKRHTRTHTGVR  172 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhc-------cCcccchhhhhhhhccccCcc
Confidence            44567999999999999999999999999             8899999999       999999999999999999999


Q ss_pred             cccccccccccCChHHhhhhhcc-cC-----------Ccceeec-CCCccCCchHHHHHHHHhccccc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI-CG-----------TREYRCD-CGTLFSRKDSFITHRAFCDALAE  193 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~-~~-----------~k~~~C~-C~~~F~~~~~L~~H~~~h~~~~~  193 (432)
                      ||+|..|+|.|..+-.|..|++. ||           +|.|.|+ ||.+-.+...+..|++.|+....
T Consensus       173 pykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  173 PYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             ccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCCH
Confidence            99999999999999999999998 75           4679999 99999999999999999986443

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.70  E-value=1.7e-18  Score=165.08  Aligned_cols=160  Identities=18%  Similarity=0.262  Sum_probs=134.5

Q ss_pred             CCCCCcCcCCCCCCCCCCCCCCCCCcCCCCCCCCCCChhhhhcCccccC--CCCceecccccccccChHHHHHHHHhcCC
Q 014041           11 PSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLM--ATNRFLCEICNKGFQRDQNLQLHRRGHNL   88 (432)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~--~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~   88 (432)
                      ..|.+.|....++..|.-.++++|-..|+.||..|.+...|-.|.+.-+  ...+|.|..|.|.|.++..|..|++.|- 
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHv-  261 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHV-  261 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhh-
Confidence            4566667777777778888888999999999999999988888877654  4568999999999999999999998886 


Q ss_pred             CcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh-hcCCCcccccccccccCChHHhhhhhcccCCcce
Q 014041           89 PWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR-KHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREY  167 (432)
Q Consensus        89 ~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~-H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k~~  167 (432)
                                    ..|+|+.|       +......+.|..|++. |..+|||+|+.|++.|.+.++|.+|..+|.+-.|
T Consensus       262 --------------n~ykCplC-------dmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y  320 (467)
T KOG3608|consen  262 --------------NCYKCPLC-------DMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVY  320 (467)
T ss_pred             --------------hccccccc-------ccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccce
Confidence                          46899998       8888889999999986 7788999999999999999999999888778888


Q ss_pred             eec---CCCccCCchHHHHHHHHhcccc
Q 014041          168 RCD---CGTLFSRKDSFITHRAFCDALA  192 (432)
Q Consensus       168 ~C~---C~~~F~~~~~L~~H~~~h~~~~  192 (432)
                      .|+   |.++|++...|++|++.++...
T Consensus       321 ~C~h~~C~~s~r~~~q~~~H~~evhEg~  348 (467)
T KOG3608|consen  321 QCEHPDCHYSVRTYTQMRRHFLEVHEGN  348 (467)
T ss_pred             ecCCCCCcHHHHHHHHHHHHHHHhccCC
Confidence            885   8888888888888988777433

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.69  E-value=7.9e-18  Score=175.61  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=50.9

Q ss_pred             CCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        34 ~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      -+-.|=+|.+.....+.|+.|.++|++|+||+|+|||+.|.++.+|+.||-+|.
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccc
Confidence            467799999999999999999999999999999999999999999999999997

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.64  E-value=3.1e-17  Score=145.84  Aligned_cols=113  Identities=24%  Similarity=0.393  Sum_probs=105.5

Q ss_pred             CCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        31 ~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      ...-.+.|.+|||.|.....|++|++.|...|+|.|..|||.|..-..|++|+|+|+             |.+||+|..|
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rtht-------------gvrpykc~~c  179 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHT-------------GVRPYKCSLC  179 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcccc-------------Cccccchhhh
Confidence            345678999999999999999999999999999999999999999999999999999             9999999999


Q ss_pred             CCCCCCCCCccCCHHHHHHHHhhhcC-----------CCcccccccccccCChHHhhhhhcc-cC
Q 014041          111 SCVHHDPSRALGDLTGIKKHFSRKHG-----------EKKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       111 ~c~~~~c~k~f~~~~~L~~H~~~H~g-----------ekp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (432)
                             +|+|..+..|..|++.-+|           +|-|.|..||.+-.+.+.+..|++. |.
T Consensus       180 -------~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  180 -------EKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             -------hHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence                   9999999999999988665           4679999999999999999999998 54

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.56  E-value=3.8e-16  Score=149.12  Aligned_cols=169  Identities=14%  Similarity=0.210  Sum_probs=143.5

Q ss_pred             CCCCCCCCCCCCcCcCCCCCCCCCCCC--CCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHH
Q 014041            4 QDHGLSVPSTLKGFVQEPNSNPNPNPS--SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQL   81 (432)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~   81 (432)
                      .|+-+.||.|+.-|.-...+-.|--+.  -..-.|.|..|.|.|.++..|..|+..|..  -|+|+.|+......+.|.+
T Consensus       204 ~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn--~ykCplCdmtc~~~ssL~~  281 (467)
T KOG3608|consen  204 NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN--CYKCPLCDMTCSSASSLTT  281 (467)
T ss_pred             CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh--cccccccccCCCChHHHHH
Confidence            566789999999888654443333221  123489999999999999999999998865  4999999999999999999


Q ss_pred             HHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc--cccccCChHHhhhhh
Q 014041           82 HRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHS  159 (432)
Q Consensus        82 H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~--C~k~F~~~~~L~~H~  159 (432)
                      |+|.-+            ..+|||+|+.|       ++.|.+.+.|.+|...|. +-.|.|+.  |...|.....|++|+
T Consensus       282 H~r~rH------------s~dkpfKCd~C-------d~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~  341 (467)
T KOG3608|consen  282 HIRYRH------------SKDKPFKCDEC-------DTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHF  341 (467)
T ss_pred             HHHhhh------------ccCCCccccch-------hhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHH
Confidence            988755            37999999999       999999999999999997 77799988  999999999999999


Q ss_pred             cc-c-C--Ccceeec-CCCccCCchHHHHHHHHhcccccc
Q 014041          160 KI-C-G--TREYRCD-CGTLFSRKDSFITHRAFCDALAEE  194 (432)
Q Consensus       160 ~~-~-~--~k~~~C~-C~~~F~~~~~L~~H~~~h~~~~~~  194 (432)
                      +. | |  .-+|.|. |.+.|.+-.+|..|+++-|+....
T Consensus       342 ~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~P  381 (467)
T KOG3608|consen  342 LEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGFRLP  381 (467)
T ss_pred             HHhccCCCCCceeeecchhhhccchhHHHHHHHhhcccCC
Confidence            98 5 3  4579999 999999999999998877765443

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.48  E-value=8.6e-15  Score=150.70  Aligned_cols=106  Identities=25%  Similarity=0.563  Sum_probs=96.1

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC------
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG------  136 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g------  136 (432)
                      ...|++|.+.+++...|+.|++.-+           +..+..|.|..|       ...|..+..|.+||.+|..      
T Consensus       210 lltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa~  271 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQAI  271 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCcccc
Confidence            4789999999999999999977654           125667999999       9999999999999998863      


Q ss_pred             -------CCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchHHHHHHH
Q 014041          137 -------EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRA  186 (432)
Q Consensus       137 -------ekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~L~~H~~  186 (432)
                             .|+|+|..|+|.|+.+-+|+.|+|+ .|||||.|+ |+|+|+....+..||.
T Consensus       272 sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  272 SLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             cccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCccccccc
Confidence                   4789999999999999999999999 899999999 9999999999999985

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.48  E-value=9.4e-15  Score=150.44  Aligned_cols=81  Identities=25%  Similarity=0.596  Sum_probs=67.5

Q ss_pred             CCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041           60 ATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus        60 ~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      .+..|.|+.|+|+|.....|.+|.-.|+             |.+||.|.+|       .|+|+.+.+|..|+|.|.||||
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHs-------------GqRPyqC~iC-------kKAFKHKHHLtEHkRLHSGEKP  950 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHS-------------GQRPYQCIIC-------KKAFKHKHHLTEHKRLHSGEKP  950 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhc-------------CCCCcccchh-------hHhhhhhhhhhhhhhhccCCCc
Confidence            3456888888888888888888888887             8888888888       8888888888888888888888


Q ss_pred             ccccccccccCChHHhhhhhc
Q 014041          140 WKCEKCSKKYAVQSDWKAHSK  160 (432)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~  160 (432)
                      |.|+.|+|+|.....+-.||.
T Consensus       951 fQCdKClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  951 FQCDKCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             chhhhhhhhcccccchHhhhc
Confidence            888888888888887777776

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.25  E-value=1.1e-11  Score=128.98  Aligned_cols=103  Identities=23%  Similarity=0.468  Sum_probs=88.3

Q ss_pred             CceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccc
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~  141 (432)
                      +.+.|+.|++.|. ...|..|++.|+               ++|.|+ |       ++.+ .+..|..|+++|.++|++.
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-C-------g~~~-~R~~L~~H~~thCp~Kpi~  506 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-C-------GVVL-EKEQMVQHQASTCPLRLIT  506 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-C-------CCCc-chhHHHhhhhccCCCCcee
Confidence            4479999999996 678999999986               579999 8       8755 6789999999999999999


Q ss_pred             ccccccccC----------ChHHhhhhhcccCCcceeec-CCCccCCchHHHHHHHHhcc
Q 014041          142 CEKCSKKYA----------VQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       142 C~~C~k~F~----------~~~~L~~H~~~~~~k~~~C~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      |.+|++.|.          ....|..|..++|.+++.|+ |++.|..++ |..|+..+|+
T Consensus       507 C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlrd-m~~H~~~~h~  565 (567)
T PLN03086        507 CRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLKE-MDIHQIAVHQ  565 (567)
T ss_pred             CCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeehh-HHHHHHHhhc
Confidence            999999995          24589999999999999999 999987665 5788877665

>PHA00733 hypothetical protein

Probab=99.10  E-value=7.6e-11  Score=101.10  Aligned_cols=114  Identities=16%  Similarity=0.115  Sum_probs=81.3

Q ss_pred             CCCCCcCCCCCCCCC-CChhhhhcCccccCCCCceecccccccccChHHHHHH--HHhcCCCcccccccccccCCcceeC
Q 014041           31 SNQLKRKRNLPGTPD-PDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        31 ~~~~k~~c~~cg~~~-~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H--~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      ++.++|-.+..|-.| ++.+.|..+...-.+.++++|.+|++.|.....|..|  ++.|.          .....++|.|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C   76 (128)
T PHA00733          7 SGSKKYLSNHKGIFIHVTLEELKRYHSLTPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVC   76 (128)
T ss_pred             cchHhhcccCCCeEEecCHHHhhhhhcCChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccC
Confidence            345666655555433 3456666665555667889999999999888887776  33322          0124678888


Q ss_pred             CCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cC
Q 014041          108 PEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       108 ~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (432)
                      +.|       ++.|.....|..|++.|  +++|.|.+|++.|.....|..|+.. |+
T Consensus        77 ~~C-------gk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         77 PLC-------LMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCC-------CCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            888       88888888888888876  4568888888888888888888776 54

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.10  E-value=1.2e-10  Score=121.36  Aligned_cols=103  Identities=14%  Similarity=0.241  Sum_probs=87.4

Q ss_pred             CCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCC
Q 014041           34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCV  113 (432)
Q Consensus        34 ~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~  113 (432)
                      ..+.|+.||+.|. ...|..|.++++  ++|.|+ ||+.| .+..|..|+++|.             .++++.|++|   
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thC-------------p~Kpi~C~fC---  510 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTC-------------PLRLITCRFC---  510 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccC-------------CCCceeCCCC---
Confidence            4469999999997 577999999985  789999 99866 6689999999998             8999999999   


Q ss_pred             CCCCCCccC----------CHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cC
Q 014041          114 HHDPSRALG----------DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       114 ~~~c~k~f~----------~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (432)
                          ++.|.          ....|..|...+ |.+++.|..|++.|..+ +|..|+.. |.
T Consensus       511 ----~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~  565 (567)
T PLN03086        511 ----GDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVHQ  565 (567)
T ss_pred             ----CCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhhc
Confidence                88874          356899999996 99999999999988766 67788776 53

>PHA00733 hypothetical protein

Probab=98.95  E-value=4.7e-10  Score=96.22  Aligned_cols=83  Identities=16%  Similarity=0.275  Sum_probs=70.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHH--Hh---hhcCCCcccccccccccCChHHhhhhhcccCCcceeec-CCCc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKH--FS---RKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTL  174 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H--~~---~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k~~~C~-C~~~  174 (432)
                      ..+++.|.+|       .+.|.....|..|  ++   .+++++||.|+.|++.|.....|..|++.+ +.+|.|+ |++.
T Consensus        37 ~~~~~~~~~~-------~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~  108 (128)
T PHA00733         37 EQKRLIRAVV-------KTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE  108 (128)
T ss_pred             hhhhHHHHHH-------hhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence            5688999999       8888777776665  22   344689999999999999999999999975 4679999 9999


Q ss_pred             cCCchHHHHHHHHhccc
Q 014041          175 FSRKDSFITHRAFCDAL  191 (432)
Q Consensus       175 F~~~~~L~~H~~~h~~~  191 (432)
                      |.....|.+|+...|.+
T Consensus       109 F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        109 FRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             cCCHHHHHHHHHHhcCc
Confidence            99999999999987764

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.94  E-value=1.6e-10  Score=113.36  Aligned_cols=151  Identities=16%  Similarity=0.204  Sum_probs=113.8

Q ss_pred             CCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcC-CCccc--cc----------------
Q 014041           34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN-LPWKL--KQ----------------   94 (432)
Q Consensus        34 ~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~-~~~~~--~~----------------   94 (432)
                      -.|.|.+|...|.+.-.|..|...-.--.-|+|++|+|+|.-..+|.-|+|+|. ++...  ..                
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea  345 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEA  345 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhc
Confidence            368999999999999999999877666566999999999999999999999997 11111  00                


Q ss_pred             -ccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC-----------------------------------
Q 014041           95 -RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK-----------------------------------  138 (432)
Q Consensus        95 -~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek-----------------------------------  138 (432)
                       +.-....+.-|.|.+|       +|.|.+...|++|..+|+...                                   
T Consensus       346 ~rsg~dss~gi~~C~~C-------~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g  418 (500)
T KOG3993|consen  346 ERSGDDSSSGIFSCHTC-------GKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHG  418 (500)
T ss_pred             cccCCcccCceeecHHh-------hhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccc
Confidence             0001123447999999       999999999999988876310                                   


Q ss_pred             -----------cccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchHHHHHHHHhccc
Q 014041          139 -----------KWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDAL  191 (432)
Q Consensus       139 -----------p~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~L~~H~~~h~~~  191 (432)
                                 -..|++|+-.+..+..--.|.+. +-+..|.|. |.-.|.....|.+|+..+|..
T Consensus       419 ~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  419 DEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             cceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence                       01355566555555555555555 556669999 999999999999999988753

>PHA02768 hypothetical protein; Provisional

Probab=98.63  E-value=1.3e-08  Score=72.85  Aligned_cols=44  Identities=18%  Similarity=0.257  Sum_probs=38.9

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHH
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK  128 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~  128 (432)
                      -|+|++|||.|.+..+|..|+|+|+               ++|+|..|       ++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~---------------k~~kc~~C-------~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN---------------TNLKLSNC-------KRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC---------------CcccCCcc-------cceecccceeE
Confidence            4899999999999999999999996               58999998       99998776654

>PHA02768 hypothetical protein; Provisional

Probab=98.52  E-value=4.6e-08  Score=70.13  Aligned_cols=44  Identities=14%  Similarity=0.286  Sum_probs=37.0

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhh
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWK  156 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~  156 (432)
                      -|.|+.|       |+.|...+.|..|+++|+  ++|+|..|++.|.+.+.|.
T Consensus         5 ~y~C~~C-------GK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPIC-------GEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchh-------CCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            4788888       899999999999999988  6888988998888777664

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.46  E-value=8.9e-08  Score=58.55  Aligned_cols=26  Identities=31%  Similarity=0.824  Sum_probs=23.7

Q ss_pred             HHHHHHhhhcCCCcccccccccccCC
Q 014041          126 GIKKHFSRKHGEKKWKCEKCSKKYAV  151 (432)
Q Consensus       126 ~L~~H~~~H~gekp~~C~~C~k~F~~  151 (432)
                      +|.+|+++|+|+|||+|++|++.|..
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            48899999999999999999999963

...

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.32  E-value=8.6e-08  Score=94.50  Aligned_cols=85  Identities=19%  Similarity=0.427  Sum_probs=71.3

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcccCCc-----------------
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTR-----------------  165 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k-----------------  165 (432)
                      ..|+|..|       ...|.+...|..|.-.-.-.--|+|+.|+|.|.-..+|..|.|+|.-|                 
T Consensus       266 GdyiCqLC-------K~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~  338 (500)
T KOG3993|consen  266 GDYICQLC-------KEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET  338 (500)
T ss_pred             HHHHHHHH-------HHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence            46999999       999999999999975433333499999999999999999999986221                 


Q ss_pred             -----------------ceeec-CCCccCCchHHHHHHHHhcccccc
Q 014041          166 -----------------EYRCD-CGTLFSRKDSFITHRAFCDALAEE  194 (432)
Q Consensus       166 -----------------~~~C~-C~~~F~~~~~L~~H~~~h~~~~~~  194 (432)
                                       .|.|. |++.|++...|++|...|+.....
T Consensus       339 rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~  385 (500)
T KOG3993|consen  339 RAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLA  385 (500)
T ss_pred             hhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccc
Confidence                             28999 999999999999999999875443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.17  E-value=3.9e-07  Score=55.69  Aligned_cols=26  Identities=15%  Similarity=0.430  Sum_probs=23.8

Q ss_pred             hhhcCccccCCCCceecccccccccC
Q 014041           50 VIALSPKSLMATNRFLCEICNKGFQR   75 (432)
Q Consensus        50 ~l~~h~~~h~~~k~f~C~~Cgk~F~~   75 (432)
                      .|..|+++|++++||+|++|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889999999999999999999974

...

>PHA00616 hypothetical protein

Probab=98.09  E-value=1.2e-06  Score=59.78  Aligned_cols=34  Identities=12%  Similarity=0.245  Sum_probs=31.3

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      ||+|+.||+.|..+..|..|++.|+             +++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~h-------------g~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVH-------------KQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhc-------------CCCccceeE
Confidence            6999999999999999999999999             788888865

>PHA00732 hypothetical protein

Probab=97.96  E-value=5e-06  Score=65.01  Aligned_cols=49  Identities=22%  Similarity=0.412  Sum_probs=33.8

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      ||.|++||+.|.+...|+.|++.++             .  ++.|+.|       ++.|.   .|..|++.+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H-------------~--~~~C~~C-------gKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNH-------------T--LTKCPVC-------NKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhccc-------------C--CCccCCC-------CCEeC---ChhhhhcccCC
Confidence            5778888888888888888877533             1  2467777       77776   46777765543

>PHA00616 hypothetical protein

Probab=97.85  E-value=7.2e-06  Score=56.06  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=30.3

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccc
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS  146 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~  146 (432)
                      ||.|..|       |+.|..+..|.+|++.|+|++++.|+.--
T Consensus         1 pYqC~~C-------G~~F~~~s~l~~H~r~~hg~~~~~~~~~y   36 (44)
T PHA00616          1 MYQCLRC-------GGIFRKKKEVIEHLLSVHKQNKLTLEYFY   36 (44)
T ss_pred             CCccchh-------hHHHhhHHHHHHHHHHhcCCCccceeEEE
Confidence            5788888       89999999999999999999988887643

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.85  E-value=9.2e-06  Score=47.92  Aligned_cols=23  Identities=43%  Similarity=0.902  Sum_probs=21.8

Q ss_pred             eecccccccccChHHHHHHHHhc
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      |+|++|++.|.+...|+.|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            79999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00732 hypothetical protein

Probab=97.84  E-value=1.1e-05  Score=63.16  Aligned_cols=48  Identities=17%  Similarity=0.200  Sum_probs=41.9

Q ss_pred             CcCCCCCCCCCCChhhhhcCccc-cCCCCceecccccccccChHHHHHHHHhcCC
Q 014041           35 KRKRNLPGTPDPDAEVIALSPKS-LMATNRFLCEICNKGFQRDQNLQLHRRGHNL   88 (432)
Q Consensus        35 k~~c~~cg~~~~~~~~l~~h~~~-h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~   88 (432)
                      +|+|..||+.|.....|..|++. |.+   +.|++||+.|.   .|..|++++..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~~~~   49 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYSQYD   49 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeC---ChhhhhcccCC
Confidence            47899999999999999999984 653   68999999997   69999988763

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.83  E-value=2.3e-05  Score=56.81  Aligned_cols=52  Identities=23%  Similarity=0.439  Sum_probs=35.0

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      .|.|++|++ ..+...|..|....+.           ...+.+.|++|       ...+.  ..|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~-----------~~~~~v~CPiC-------~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHR-----------SESKNVVCPIC-------SSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCc-----------CCCCCccCCCc-------hhhhh--hHHHHHHHHhc
Confidence            478888888 4556778888555441           13456888888       55443  37888887765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.82  E-value=6.8e-06  Score=78.53  Aligned_cols=28  Identities=29%  Similarity=0.665  Sum_probs=23.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      ++|||+|++-+|     .|.|+...+|+.|+.-
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lh  373 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLH  373 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhc
Confidence            458999999877     9999999999999875

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.71  E-value=8.6e-06  Score=77.83  Aligned_cols=51  Identities=31%  Similarity=0.635  Sum_probs=45.5

Q ss_pred             CCCcccccc--cccccCChHHhhhhhcc-c-------------------CCcceeec-CCCccCCchHHHHHHH
Q 014041          136 GEKKWKCEK--CSKKYAVQSDWKAHSKI-C-------------------GTREYRCD-CGTLFSRKDSFITHRA  186 (432)
Q Consensus       136 gekp~~C~~--C~k~F~~~~~L~~H~~~-~-------------------~~k~~~C~-C~~~F~~~~~L~~H~~  186 (432)
                      ++|||+|++  |.|+|+....|+.|+.- |                   ..|||+|+ |+|+|+....|+-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            469999987  99999999999999886 5                   34899999 9999999999998875

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.50  E-value=6.7e-05  Score=44.21  Aligned_cols=24  Identities=42%  Similarity=0.899  Sum_probs=20.5

Q ss_pred             eecccccccccChHHHHHHHHhcC
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+|++|++.|.+...|..|++.|+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            789999999999999999999875

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.35  E-value=0.00021  Score=51.71  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc-CC-CcccccccccccCChHHhhhhhcc
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GE-KKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~-ge-kp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      .|.|++|       ++ ..+...|..|....+ .+ +.+.|++|...+.  .+|..|+..
T Consensus         2 ~f~CP~C-------~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~   51 (54)
T PF05605_consen    2 SFTCPYC-------GK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNS   51 (54)
T ss_pred             CcCCCCC-------CC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHH
Confidence            3778888       77 455677888877643 33 4688888887544  377777765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.34  E-value=0.0001  Score=45.17  Aligned_cols=25  Identities=36%  Similarity=0.699  Sum_probs=23.7

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+|++|++.|.+...|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6999999999999999999999886

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.26  E-value=0.00012  Score=59.27  Aligned_cols=23  Identities=22%  Similarity=0.567  Sum_probs=0.0

Q ss_pred             ecccccccccChHHHHHHHHhcC
Q 014041           65 LCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|.+|+..|.....|..|+...+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H   23 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH   23 (100)
T ss_dssp             -----------------------
T ss_pred             Ccccccccccccccccccccccc
Confidence            58888888888888888876555

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=97.23  E-value=0.00023  Score=72.37  Aligned_cols=143  Identities=19%  Similarity=0.227  Sum_probs=96.6

Q ss_pred             CCcCCCCCCCCCCChhhhhcCcc--ccCCC--Cceecc--cccccccChHHHHHHHHhcCCCccccccc-----------
Q 014041           34 LKRKRNLPGTPDPDAEVIALSPK--SLMAT--NRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRT-----------   96 (432)
Q Consensus        34 ~k~~c~~cg~~~~~~~~l~~h~~--~h~~~--k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~-----------   96 (432)
                      .++.|..|...|.....+..|.+  .|.++  ++|.|+  .|++.|.+...|..|...|..........           
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            57999999999999999999999  89999  999999  89999999999999999998322111000           


Q ss_pred             -----------ccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC--cccccccccccCChHHhhhhhcc-c
Q 014041           97 -----------NKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK--KWKCEKCSKKYAVQSDWKAHSKI-C  162 (432)
Q Consensus        97 -----------~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek--p~~C~~C~k~F~~~~~L~~H~~~-~  162 (432)
                                 ......+.+.|..-.|     ...+.....+..|...|...+  .+.|..|.+.|.....+..|++. .
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSC-----IRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHT  442 (467)
T ss_pred             CCCCccchhhccCccCCccccccccch-----hhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccc
Confidence                       0001122233333222     566666666777777666655  35556788888888888887777 3


Q ss_pred             CCcceeecCCCccCCchHH
Q 014041          163 GTREYRCDCGTLFSRKDSF  181 (432)
Q Consensus       163 ~~k~~~C~C~~~F~~~~~L  181 (432)
                      ...++.|.+-+.|.....+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~  461 (467)
T COG5048         443 NHAPLLCSILKSFRRDLDL  461 (467)
T ss_pred             cCCceeeccccccchhhhh
Confidence            3444444444444444433

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00085  Score=71.48  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=13.9

Q ss_pred             ecccccccccChHHHHHHHHhcC
Q 014041           65 LCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|.+| -.|.....|+.|++..|
T Consensus       117 ~~~~c-~~~~s~~~Lk~H~~~~H  138 (669)
T KOG2231|consen  117 ECLHC-TEFKSVENLKNHMRDQH  138 (669)
T ss_pred             CCccc-cchhHHHHHHHHHHHhh
Confidence            34444 44457888999985544

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.0011  Score=70.70  Aligned_cols=125  Identities=19%  Similarity=0.264  Sum_probs=78.6

Q ss_pred             CCcCCCCCCCCCCChhhhhcCcc-ccCCCCceecccc----------cccccChHHHHHHHHhcCCCcccccccccccCC
Q 014041           34 LKRKRNLPGTPDPDAEVIALSPK-SLMATNRFLCEIC----------NKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRK  102 (432)
Q Consensus        34 ~k~~c~~cg~~~~~~~~l~~h~~-~h~~~k~f~C~~C----------gk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~  102 (432)
                      .++.|..| ..|...+.|+.|+. .|..   +.|.+|          .|.|. ...|..|++.=- +       .....+
T Consensus       114 ~~~~~~~c-~~~~s~~~Lk~H~~~~H~~---~~c~lC~~~~kif~~e~k~Yt-~~el~~h~~~gd-~-------d~~s~r  180 (669)
T KOG2231|consen  114 NKKECLHC-TEFKSVENLKNHMRDQHKL---HLCSLCLQNLKIFINERKLYT-RAELNLHLMFGD-P-------DDESCR  180 (669)
T ss_pred             ccCCCccc-cchhHHHHHHHHHHHhhhh---hccccccccceeeeeeeeheh-HHHHHHHHhcCC-C-------cccccc
Confidence            35667777 77788999999984 3432   444444          44444 445667755321 0       000111


Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccc------cccCChHHhhhhhcc-cCCcceeec---CC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS------KKYAVQSDWKAHSKI-CGTREYRCD---CG  172 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~------k~F~~~~~L~~H~~~-~~~k~~~C~---C~  172 (432)
                      .--.|..|       ...|-....|.+|++.++    |.|..|.      ..|..-++|..|.|. |    |.|+   |.
T Consensus       181 Ghp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~H----flCE~~~C~  245 (669)
T KOG2231|consen  181 GHPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH----FLCEEEFCR  245 (669)
T ss_pred             CCccchhh-------hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcC----ccccccccc
Confidence            23567777       899999999999999876    6777774      456777889999888 6    5564   54


Q ss_pred             -CccCCchHHHHHHH
Q 014041          173 -TLFSRKDSFITHRA  186 (432)
Q Consensus       173 -~~F~~~~~L~~H~~  186 (432)
                       +.|.....+..|++
T Consensus       246 ~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  246 TKKFYVAFELEIELK  260 (669)
T ss_pred             cceeeehhHHHHHHH
Confidence             33444444555554

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.65  E-value=0.0013  Score=38.55  Aligned_cols=16  Identities=19%  Similarity=0.578  Sum_probs=9.4

Q ss_pred             CCccCCHHHHHHHHhh
Q 014041          118 SRALGDLTGIKKHFSR  133 (432)
Q Consensus       118 ~k~f~~~~~L~~H~~~  133 (432)
                      ++.|.++..|..|++.
T Consensus         7 ~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    7 GKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             TEEESSHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHhH
Confidence            5566666666666554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>smart00355 ZnF_C2H2 zinc finger

Probab=96.64  E-value=0.0012  Score=39.31  Aligned_cols=24  Identities=33%  Similarity=0.667  Sum_probs=22.2

Q ss_pred             eecccccccccChHHHHHHHHhcC
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+|+.|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            689999999999999999999775

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.64  E-value=0.0013  Score=53.21  Aligned_cols=73  Identities=15%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             eCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcccCCcceeec-CCCccCCchHHHHH
Q 014041          106 ICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITH  184 (432)
Q Consensus       106 ~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k~~~C~-C~~~F~~~~~L~~H  184 (432)
                      .|..|       +..|.+...|..|+...++...-    ..+.+.....+..+++..-...+.|. |++.|.+...|..|
T Consensus         1 ~C~~C-------~~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFC-------DESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Ccccc-------ccccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            37777       99999999999999886663211    11223344445555554333479999 99999999999999


Q ss_pred             HHHhc
Q 014041          185 RAFCD  189 (432)
Q Consensus       185 ~~~h~  189 (432)
                      ++.+.
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            99753

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=96.51  E-value=0.00093  Score=75.04  Aligned_cols=145  Identities=14%  Similarity=0.160  Sum_probs=103.5

Q ss_pred             CCCCCCCCCCChhhhhcCccc-cCCCCceecccccccccChHHHHHHHHhcCCCcc---cc--------cc-cccccCCc
Q 014041           37 KRNLPGTPDPDAEVIALSPKS-LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWK---LK--------QR-TNKEVRKK  103 (432)
Q Consensus        37 ~c~~cg~~~~~~~~l~~h~~~-h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~---~~--------~~-~~~~~~~k  103 (432)
                      .|..|+..+.....+.-|... +.-.|.|+|+.|+..|+....|..|||.-+-...   ++        .+ .....+.+
T Consensus       438 e~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~  517 (1406)
T KOG1146|consen  438 ELTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGK  517 (1406)
T ss_pred             cccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCC
Confidence            355566666666666666554 4455789999999999999999999998441111   11        01 11224557


Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhh--hc-----------------------------------C------CCcc
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSR--KH-----------------------------------G------EKKW  140 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~--H~-----------------------------------g------ekp~  140 (432)
                      +|.|..|       ...++....|-.|+..  |.                                   |      +-+|
T Consensus       518 p~~C~~C-------~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~  590 (1406)
T KOG1146|consen  518 PYPCRAC-------NYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSW  590 (1406)
T ss_pred             cccceee-------eeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCc
Confidence            8889888       9999999999999853  21                                   0      1259


Q ss_pred             cccccccccCChHHhhhhhcc-cC-Ccceeec-CCCccCCchHHHHHHHHh
Q 014041          141 KCEKCSKKYAVQSDWKAHSKI-CG-TREYRCD-CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~~-~~-~k~~~C~-C~~~F~~~~~L~~H~~~h  188 (432)
                      .|.+|+........|+.||.. +. .-|..|. |.-.+.....+..+.+.+
T Consensus       591 ~C~vc~yetniarnlrihmtss~~s~~p~~~Lq~~it~~l~~~~~~~~~lp  641 (1406)
T KOG1146|consen  591 RCEVCSYETNIARNLRIHMTASPSSSPPSLVLQQNITSSLASLLGGQGRLP  641 (1406)
T ss_pred             chhhhcchhhhhhccccccccCCCCCChHHHhhhcchhhccccccCcCCCC
Confidence            999999999999999999998 44 4447787 888877777776666655

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.42  E-value=0.0016  Score=39.81  Aligned_cols=22  Identities=32%  Similarity=0.767  Sum_probs=11.1

Q ss_pred             eeec-CCCccCCchHHHHHHHHh
Q 014041          167 YRCD-CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       167 ~~C~-C~~~F~~~~~L~~H~~~h  188 (432)
                      |.|+ |++.|.+...|..|++.|
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCccCCccCChhHHHHHhHHh
Confidence            4454 555555555555555444

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.27  E-value=0.004  Score=36.35  Aligned_cols=24  Identities=17%  Similarity=0.582  Sum_probs=13.9

Q ss_pred             eeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       105 y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      |.|++|       ++.|.++..|+.|++.|+
T Consensus         1 ~~C~~C-------~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPIC-------GKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SST-------S-EESSHHHHHHHHHHHS
T ss_pred             CCCcCC-------CCcCCcHHHHHHHHHhhC
Confidence            456666       666666666666666653

...

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.24  E-value=0.0024  Score=38.20  Aligned_cols=23  Identities=43%  Similarity=0.996  Sum_probs=21.3

Q ss_pred             eecccccccccChHHHHHHHHhc
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      |.|++|++.|.+...|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            78999999999999999998865

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.10  E-value=0.0056  Score=42.97  Aligned_cols=34  Identities=26%  Similarity=0.438  Sum_probs=22.7

Q ss_pred             CccccC-CCCceecccccccccChHHHHHHHHhcC
Q 014041           54 SPKSLM-ATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        54 h~~~h~-~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +.+.+. .+.|-.|++|+..+....+|++|+..++
T Consensus        14 ~~k~~~~S~~PatCP~C~a~~~~srnLrRHle~~H   48 (54)
T PF09237_consen   14 KPKSKSQSEQPATCPICGAVIRQSRNLRRHLEIRH   48 (54)
T ss_dssp             --CCCCTTS--EE-TTT--EESSHHHHHHHHHHHT
T ss_pred             HHHHhhccCCCCCCCcchhhccchhhHHHHHHHHh
Confidence            344444 4678999999999999999999998777

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=95.82  E-value=0.0047  Score=55.03  Aligned_cols=39  Identities=18%  Similarity=0.496  Sum_probs=28.1

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCCh
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQ  152 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~  152 (432)
                      -+|.|. |       ++   ....+.+|.++|+++++|+|..|+..|...
T Consensus       118 ~~Y~C~-C-------~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-C-------QE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-C-------CC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            467776 6       55   566677888888888888888887777654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.48  E-value=0.012  Score=41.40  Aligned_cols=32  Identities=16%  Similarity=0.350  Sum_probs=16.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      .+.|-.|++|       +..+....+|++|+..+|+.||
T Consensus        21 S~~PatCP~C-------~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPIC-------GAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT---------EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcc-------hhhccchhhHHHHHHHHhcccC
Confidence            4456666666       6666666666666666555554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.44  E-value=0.0067  Score=61.57  Aligned_cols=109  Identities=18%  Similarity=0.226  Sum_probs=79.6

Q ss_pred             CceecccccccccChHHHHHHHH--hcCCCcccccccccccCC--cceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTNKEVRK--KVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r--~H~~~~~~~~~~~~~~~~--k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      .++.|..|.+.|.+...|..|.+  .|.             ++  +++.|+  .|       ++.|.+...+..|...|+
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~-------~~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLC-------GKLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCC-------CccccccccccCCccccc
Confidence            57999999999999999999999  787             67  899999  67       999999999999999999


Q ss_pred             CCCccccc--ccccccCChHHhh----hhhc-c-cCCcceeec---CCCccCCchHHHHHHHHhcc
Q 014041          136 GEKKWKCE--KCSKKYAVQSDWK----AHSK-I-CGTREYRCD---CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       136 gekp~~C~--~C~k~F~~~~~L~----~H~~-~-~~~k~~~C~---C~~~F~~~~~L~~H~~~h~~  190 (432)
                      +.++++|.  .|.+.+.....-.    .+.. . ...+.+.|.   |...+.+...+..|...+..
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS  413 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccc
Confidence            98887774  3655555444311    1111 1 445556663   66666666666666555544

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=95.20  E-value=0.0046  Score=37.84  Aligned_cols=22  Identities=32%  Similarity=0.844  Sum_probs=19.5

Q ss_pred             eecccccccccChHHHHHHHHh
Q 014041           64 FLCEICNKGFQRDQNLQLHRRG   85 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~   85 (432)
                      |.|++|++.|.+...|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            7899999999999999988765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=94.86  E-value=0.014  Score=51.97  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=33.6

Q ss_pred             CceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCH
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDL  124 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~  124 (432)
                      -+|.|. |++   ....+.+|.++|+             ++++|.|..|       +..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~-------------g~~~YrC~~C-------~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVR-------------GEAVYRCRRC-------GETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhc-------------CCccEECCCC-------CceeEEe
Confidence            479998 998   7788999999999             8999999999       7777543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.38  E-value=0.025  Score=55.15  Aligned_cols=113  Identities=18%  Similarity=0.299  Sum_probs=69.6

Q ss_pred             ceeccc--ccccccChHHHHHHHHhcCCCccccc------------------ccccc--------cCCcceeCCCCCCCC
Q 014041           63 RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQ------------------RTNKE--------VRKKVYICPEKSCVH  114 (432)
Q Consensus        63 ~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~------------------~~~~~--------~~~k~y~C~~C~c~~  114 (432)
                      .|.|+.  |..+-.....|+.|.+..+.-.-|..                  -.+.+        .-+.--.|..|    
T Consensus       151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC----  226 (493)
T COG5236         151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFC----  226 (493)
T ss_pred             HhcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhc----
Confidence            488864  66665556788999766552221110                  00111        11223357776    


Q ss_pred             CCCCCccCCHHHHHHHHhhhcCCCccccccccc-------ccCChHHhhhhhcc-cCCcceeec---CC----CccCCch
Q 014041          115 HDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK-------KYAVQSDWKAHSKI-CGTREYRCD---CG----TLFSRKD  179 (432)
Q Consensus       115 ~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k-------~F~~~~~L~~H~~~-~~~k~~~C~---C~----~~F~~~~  179 (432)
                         ...|-+-+.|.+|+|..|.    +|.+|++       -|+.-..|.+|.+. |    |.|.   |.    ..|....
T Consensus       227 ---~~~FYdDDEL~~HcR~~HE----~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~  295 (493)
T COG5236         227 ---KIYFYDDDELRRHCRLRHE----ACHICDMVGPIRYQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHT  295 (493)
T ss_pred             ---cceecChHHHHHHHHhhhh----hhhhhhccCccchhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHH
Confidence               8888888888888887542    3555554       36667778888776 4    6674   54    4688888


Q ss_pred             HHHHHHHHhcc
Q 014041          180 SFITHRAFCDA  190 (432)
Q Consensus       180 ~L~~H~~~h~~  190 (432)
                      .|..|+..-|+
T Consensus       296 el~~h~~~~h~  306 (493)
T COG5236         296 ELLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHHhh
Confidence            88999765554

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.96  E-value=0.019  Score=64.90  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=55.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC-CcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE-KKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSR  177 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge-kp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~  177 (432)
                      ..|.|+|+.|       +..|.....|..|||..|.+ +-   .+|. .+.....+-+=... .+.++|.|. |...+..
T Consensus       462 ~~kt~~cpkc-------~~~yk~a~~L~vhmRskhp~~~~---~~c~-~gq~~~~~arg~~~~~~~~p~~C~~C~~sttt  530 (1406)
T KOG1146|consen  462 FFKTLKCPKC-------NWHYKLAQTLGVHMRSKHPESQS---AYCK-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTT  530 (1406)
T ss_pred             ccccccCCcc-------chhhhhHHHhhhcccccccccch---hHhH-hccccccccccccccCCCCcccceeeeeeeec
Confidence            5688999999       99999999999999984433 22   3442 23323223221112 677899999 9999999


Q ss_pred             chHHHHHHHHh
Q 014041          178 KDSFITHRAFC  188 (432)
Q Consensus       178 ~~~L~~H~~~h  188 (432)
                      +..|.+|+...
T Consensus       531 ng~LsihlqS~  541 (1406)
T KOG1146|consen  531 NGNLSIHLQSD  541 (1406)
T ss_pred             chHHHHHHHHH
Confidence            99999998754

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.93  E-value=0.034  Score=32.80  Aligned_cols=23  Identities=26%  Similarity=0.595  Sum_probs=18.9

Q ss_pred             eecccccccccChHHHHHHHHhcC
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+|+.|+-... +..|.+|++.|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            79999999888 889999999875

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=93.69  E-value=0.022  Score=56.49  Aligned_cols=171  Identities=18%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             CCCCCCCCCcCcCCCCCCCCCCC--CC-CCCCcCCCCCCCCCCChhhhhcCccc---------cCCCCceeccccccccc
Q 014041            7 GLSVPSTLKGFVQEPNSNPNPNP--SS-NQLKRKRNLPGTPDPDAEVIALSPKS---------LMATNRFLCEICNKGFQ   74 (432)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~k~~c~~cg~~~~~~~~l~~h~~~---------h~~~k~f~C~~Cgk~F~   74 (432)
                      .|.|..|.-.|.....-..|.+.  |. +-|++.-.+++   -+++.+..-..+         -.+..++.|.+|.|.|.
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPP---ItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~   79 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPP---ITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFA   79 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCC---cCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhcccc
Confidence            57888888888866434444433  22 33333333333   233333222111         23345799999999999


Q ss_pred             ChHHHHHHHHhcCCCcccccccc----------cc-------cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh----
Q 014041           75 RDQNLQLHRRGHNLPWKLKQRTN----------KE-------VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR----  133 (432)
Q Consensus        75 ~~~~L~~H~r~H~~~~~~~~~~~----------~~-------~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~----  133 (432)
                      .......|+..-..-...+...+          ..       ...+.-.+..+       -..+........+...    
T Consensus        80 s~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~l~~~~e~e~~~-------~E~~~~~d~~~e~~~dd~~E  152 (390)
T KOG2785|consen   80 SPKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSNLQNKGESELKW-------YEVDSDEDSSEEEEEDDEEE  152 (390)
T ss_pred             ChhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccccccCCCcccch-------hhcccccccchhhccCcchh
Confidence            99999999644320000000000          00       00011012222       2222222222222211    


Q ss_pred             --------hcCCCcccccccccccCChHHhhhhhcc-cCCc-----------------------ceeec-CC---CccCC
Q 014041          134 --------KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR-----------------------EYRCD-CG---TLFSR  177 (432)
Q Consensus       134 --------H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k-----------------------~~~C~-C~---~~F~~  177 (432)
                              -..+-|--|-.|++.|........||.. ||-.                       -|.|- |.   +.|.+
T Consensus       153 di~~d~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~s  232 (390)
T KOG2785|consen  153 DIEEDGDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSS  232 (390)
T ss_pred             hhhhccchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccc
Confidence                    1112356788899998888888888887 6432                       27888 98   99999


Q ss_pred             chHHHHHHHH
Q 014041          178 KDSFITHRAF  187 (432)
Q Consensus       178 ~~~L~~H~~~  187 (432)
                      ....+.||.-
T Consensus       233 leavr~HM~~  242 (390)
T KOG2785|consen  233 LEAVRAHMRD  242 (390)
T ss_pred             cHHHHHHHhh
Confidence            9999999973

>smart00355 ZnF_C2H2 zinc finger

Probab=93.60  E-value=0.076  Score=31.12  Aligned_cols=17  Identities=12%  Similarity=0.384  Sum_probs=10.4

Q ss_pred             CCccCCHHHHHHHHhhh
Q 014041          118 SRALGDLTGIKKHFSRK  134 (432)
Q Consensus       118 ~k~f~~~~~L~~H~~~H  134 (432)
                      ++.|.....|..|++.|
T Consensus         7 ~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        7 GKVFKSKSALKEHMRTH   23 (26)
T ss_pred             cchhCCHHHHHHHHHHh
Confidence            66666666666666544

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.48  E-value=0.071  Score=31.40  Aligned_cols=23  Identities=35%  Similarity=0.738  Sum_probs=13.5

Q ss_pred             eeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       105 y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      |.|+.|       +.... ...|.+|++.|+
T Consensus         1 y~C~~C-------~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHC-------SYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSS-------S-EES-HHHHHHHHHHHH
T ss_pred             CCCCCC-------CCcCC-HHHHHHHHHhhC
Confidence            566666       66665 666777776654

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.46  E-value=0.026  Score=51.33  Aligned_cols=82  Identities=21%  Similarity=0.465  Sum_probs=68.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-c----------CCcceee
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTREYRC  169 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~----------~~k~~~C  169 (432)
                      ..+.|.|++-+|     ...|...+.+..|+.+-|+   -.|.+|.+.|.+.--|..|+.. |          |.-.|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            446688999877     8999999999999987555   3699999999999999999875 5          5556999


Q ss_pred             --c-CCCccCCchHHHHHHHHhcc
Q 014041          170 --D-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       170 --~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                        + |+..|.+...-+.|+-..|.
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhcc
Confidence              4 99999999999999765544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.45  E-value=0.035  Score=32.99  Aligned_cols=21  Identities=19%  Similarity=0.730  Sum_probs=11.9

Q ss_pred             ccccccccccCChHHhhhhhc
Q 014041          140 WKCEKCSKKYAVQSDWKAHSK  160 (432)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~  160 (432)
                      |.|.+|++.|.....|+.|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            445555555555555555554

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.42  E-value=0.053  Score=33.07  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=18.8

Q ss_pred             ccccccccccCChHHhhhhhcc
Q 014041          140 WKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      |.|..|++.|.....|..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888875

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=93.11  E-value=0.055  Score=44.89  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=27.6

Q ss_pred             CCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccCh
Q 014041           33 QLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRD   76 (432)
Q Consensus        33 ~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~   76 (432)
                      ..|+.|+.||+.|..           ..+.|..|+.||..|.-.
T Consensus         7 GtKR~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    7 GTKRTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCcccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence            468999999999988           334788999999999876

The function of members of this family is unknown.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.10  E-value=0.26  Score=48.35  Aligned_cols=42  Identities=14%  Similarity=0.351  Sum_probs=30.2

Q ss_pred             CCccCCHHHHHHHHhhhcCCCcccccc--cc----cccCChHHhhhhhcc-cC
Q 014041          118 SRALGDLTGIKKHFSRKHGEKKWKCEK--CS----KKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       118 ~k~f~~~~~L~~H~~~H~gekp~~C~~--C~----k~F~~~~~L~~H~~~-~~  163 (432)
                      ..-|.+...|..|++.-+    |.|.+  |.    ..|.....|..|+.. |+
T Consensus       258 ~QYFK~Y~~Le~HF~~~h----y~ct~qtc~~~k~~vf~~~~el~~h~~~~h~  306 (493)
T COG5236         258 YQYFKSYEDLEAHFRNAH----YCCTFQTCRVGKCYVFPYHTELLEHLTRFHK  306 (493)
T ss_pred             hhhhhCHHHHHHHhhcCc----eEEEEEEEecCcEEEeccHHHHHHHHHHHhh
Confidence            345888899999988744    77743  32    357888888888876 64

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=92.95  E-value=0.19  Score=49.29  Aligned_cols=11  Identities=27%  Similarity=0.241  Sum_probs=8.3

Q ss_pred             CCCCCCCCCCc
Q 014041            6 HGLSVPSTLKG   16 (432)
Q Consensus         6 ~~~~~~~~~~~   16 (432)
                      ++++|+.|+|.
T Consensus         7 e~v~CdgC~k~   17 (381)
T KOG1280|consen    7 EGVSCDGCGKT   17 (381)
T ss_pred             CCceecccccc
Confidence            47888888764

>KOG3982 consensus Runt and related transcription factors [Transcription]

Probab=92.80  E-value=0.037  Score=54.38  Aligned_cols=10  Identities=0%  Similarity=0.162  Sum_probs=4.1

Q ss_pred             CcHHHHHHhh
Q 014041          409 LSQQELAKFM  418 (432)
Q Consensus       409 ~~~~~~~~~~  418 (432)
                      ||.+.++|..
T Consensus       104 ~laehpgeLv  113 (475)
T KOG3982|consen  104 FLAEHPGELV  113 (475)
T ss_pred             HHHhCcccee
Confidence            4444444433

>smart00451 ZnF_U1 U1-like zinc finger

Probab=92.38  E-value=0.087  Score=33.96  Aligned_cols=24  Identities=29%  Similarity=0.811  Sum_probs=21.1

Q ss_pred             ceecccccccccChHHHHHHHHhc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      +|.|++|++.|.....+..|++..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk   26 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGK   26 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChH
Confidence            589999999999999999997543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.36  E-value=0.095  Score=31.48  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=17.5

Q ss_pred             eecccccccccChHHHHHHHHh
Q 014041           64 FLCEICNKGFQRDQNLQLHRRG   85 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~   85 (432)
                      .+|++||+.| ....|..|+..
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            5899999999 67779999764

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=92.32  E-value=0.15  Score=49.99  Aligned_cols=24  Identities=33%  Similarity=0.621  Sum_probs=22.0

Q ss_pred             ceecccccccccChHHHHHHHHhc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      ++.|-.|.|.|+.+..|+.|||..
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhc
Confidence            689999999999999999998754

>KOG4377 consensus Zn-finger protein [General function prediction only]

Probab=89.72  E-value=0.39  Score=48.19  Aligned_cols=121  Identities=14%  Similarity=0.289  Sum_probs=72.3

Q ss_pred             Cceec--ccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC--
Q 014041           62 NRFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE--  137 (432)
Q Consensus        62 k~f~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge--  137 (432)
                      .-|.|  +.|+..+..+....+|..+|-+-.. +...-.+.-...|.|-.-+|     .+   +-+....|-..|+..  
T Consensus       270 Ehyhcl~e~C~ykr~~k~DvirH~~~hkkrdn-sL~dgf~rfs~syhC~~~~C-----~k---sTsdV~~h~nFht~~~n  340 (480)
T KOG4377|consen  270 EHYHCLNEYCFYKRGQKNDVIRHVEIHKKRDN-SLIDGFHRFSNSYHCTGQIC-----EK---STSDVLLHDNFHTDKRN  340 (480)
T ss_pred             hhhcccCccccccccchhhhHHHHHHHhhccc-ccccchhhcCccchhhhccc-----Cc---ccccccccCcccccccc
Confidence            34888  6799888889999999998862100 00000001112255554433     76   445556666666532  


Q ss_pred             -----Ccccccccc--cccCChHHhhhhhcc-c----CC--------------------cceeec---CCCccCCchHHH
Q 014041          138 -----KKWKCEKCS--KKYAVQSDWKAHSKI-C----GT--------------------REYRCD---CGTLFSRKDSFI  182 (432)
Q Consensus       138 -----kp~~C~~C~--k~F~~~~~L~~H~~~-~----~~--------------------k~~~C~---C~~~F~~~~~L~  182 (432)
                           ..|.|..|+  ..|+...+-..|.+- -    |-                    .-|.|+   |+.+|...+.+.
T Consensus       341 ~GfrrthfhC~r~gCTdtfK~~khk~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~s~sqm~  420 (480)
T KOG4377|consen  341 NGFRRTHFHCQRIGCTDTFKDSKHKPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLYSVSQMA  420 (480)
T ss_pred             CceecceeEEeccCCccccccccccccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEEehhhhh
Confidence                 247887766  555533333333331 1    11                    116785   999999999999


Q ss_pred             HHHHHhccc
Q 014041          183 THRAFCDAL  191 (432)
Q Consensus       183 ~H~~~h~~~  191 (432)
                      .|.|.|.+.
T Consensus       421 shkrkheRq  429 (480)
T KOG4377|consen  421 SHKRKHERQ  429 (480)
T ss_pred             hhhhhhhhh
Confidence            999999876

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=89.69  E-value=0.12  Score=45.72  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=21.7

Q ss_pred             cCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHH
Q 014041           36 RKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQ   80 (432)
Q Consensus        36 ~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~   80 (432)
                      ++|+.||.++...-.-..-.....-++.|.|+.||+.|.+...+.
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~~   45 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERVE   45 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEecc
Confidence            367777766532211111111111123377777777777665543

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=89.53  E-value=0.23  Score=42.00  Aligned_cols=37  Identities=16%  Similarity=0.162  Sum_probs=29.0

Q ss_pred             CCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHH
Q 014041           33 QLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQ   80 (432)
Q Consensus        33 ~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~   80 (432)
                      ..|+.|+.||+.|..           ..+.|..|+.||..|.....++
T Consensus         7 GtKr~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~~~~~   43 (129)
T TIGR02300         7 GTKRICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPEEALK   43 (129)
T ss_pred             CccccCCCcCccccc-----------cCCCCccCCCcCCccCcchhhc
Confidence            368999999999988           3357889999999987664443

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]

Probab=86.65  E-value=0.32  Score=51.25  Aligned_cols=30  Identities=20%  Similarity=0.365  Sum_probs=25.6

Q ss_pred             cCCCCceecccccccccChHHHHHHHHhcC
Q 014041           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        58 h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .-..++-.|..||++|........||-.|-
T Consensus       413 Ly~~~pnqC~~CG~R~~~~ee~sk~md~H~  442 (579)
T KOG2071|consen  413 LYKDSPNQCKSCGLRFDDSEERSKHMDIHD  442 (579)
T ss_pred             hccCCcchhcccccccccchhhhhHhhhhh
Confidence            345677999999999999999998888885

>smart00451 ZnF_U1 U1-like zinc finger

Probab=86.04  E-value=0.45  Score=30.50  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=16.1

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46677777777777777777664

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=85.70  E-value=0.26  Score=45.95  Aligned_cols=42  Identities=26%  Similarity=0.400  Sum_probs=34.4

Q ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhh
Q 014041          107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS  159 (432)
Q Consensus       107 C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~  159 (432)
                      |++|       .+.|....-|..|.+.    |.|+|.+|-|.+-+--.|..|-
T Consensus        13 cwyc-------nrefddekiliqhqka----khfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen   13 CWYC-------NREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             eeec-------ccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeeh
Confidence            7888       9999999999988765    3499999999887777777663

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=85.49  E-value=0.53  Score=46.33  Aligned_cols=33  Identities=9%  Similarity=0.173  Sum_probs=26.0

Q ss_pred             CCcccccccccccCChHHhhhhhcc-cCCcceee
Q 014041          137 EKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (432)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C  169 (432)
                      ..-|.|++|+++-.+...|..|... |.+-.+.|
T Consensus        77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~  110 (381)
T KOG1280|consen   77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSV  110 (381)
T ss_pred             cccccCCcccccccchhHHHHHhhhcCcccCcce
Confidence            3468999999998888899999888 77665543

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=85.35  E-value=0.21  Score=46.48  Aligned_cols=43  Identities=23%  Similarity=0.486  Sum_probs=34.5

Q ss_pred             ecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHH
Q 014041           65 LCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF  131 (432)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~  131 (432)
                      =|=+|++.|..+.-|.+|++..+                 |+|.+|       .|.+.+--.|..|-
T Consensus        12 wcwycnrefddekiliqhqkakh-----------------fkchic-------hkkl~sgpglsihc   54 (341)
T KOG2893|consen   12 WCWYCNREFDDEKILIQHQKAKH-----------------FKCHIC-------HKKLFSGPGLSIHC   54 (341)
T ss_pred             eeeecccccchhhhhhhhhhhcc-----------------ceeeee-------hhhhccCCCceeeh
Confidence            48899999999999999988766                 999999       66665656666663

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=85.20  E-value=1.8  Score=42.72  Aligned_cols=85  Identities=18%  Similarity=0.341  Sum_probs=61.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC----------------------CcccccccccccCChHHhhhh
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE----------------------KKWKCEKCSKKYAVQSDWKAH  158 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge----------------------kp~~C~~C~k~F~~~~~L~~H  158 (432)
                      ......|-.|.      ......++.+..|+-.-|+-                      ..++|-+|.|.|..+..|+.|
T Consensus       141 t~fslqClFCn------~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeH  214 (423)
T KOG2482|consen  141 TIFSLQCLFCN------NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEH  214 (423)
T ss_pred             CeeeeEEEEec------chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHH
Confidence            33456788883      34556777777777553321                      247899999999999999999


Q ss_pred             hcc--cCC-c----------------------------------------------------c--eeec-CCCccCCchH
Q 014041          159 SKI--CGT-R----------------------------------------------------E--YRCD-CGTLFSRKDS  180 (432)
Q Consensus       159 ~~~--~~~-k----------------------------------------------------~--~~C~-C~~~F~~~~~  180 (432)
                      ||.  |.+ .                                                    +  -+|- |...+-....
T Consensus       215 MrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~  294 (423)
T KOG2482|consen  215 MRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVF  294 (423)
T ss_pred             HHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHH
Confidence            997  411 0                                                    0  3898 9998888999


Q ss_pred             HHHHHHHhccc
Q 014041          181 FITHRAFCDAL  191 (432)
Q Consensus       181 L~~H~~~h~~~  191 (432)
                      |..||+..|..
T Consensus       295 l~eHmk~vHe~  305 (423)
T KOG2482|consen  295 LFEHMKIVHEF  305 (423)
T ss_pred             HHHHHHHHHHh
Confidence            99999987753

>TIGR00622 ssl1 transcription factor ssl1

Probab=85.09  E-value=1.5  Score=36.55  Aligned_cols=25  Identities=20%  Similarity=0.592  Sum_probs=14.2

Q ss_pred             Ccceeec-CCCccCCchHHHHHHHHh
Q 014041          164 TREYRCD-CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       164 ~k~~~C~-C~~~F~~~~~L~~H~~~h  188 (432)
                      ...|.|+ |...|-..=+.-.|-..|
T Consensus        79 ~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        79 SHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             ccceeCCCCCCccccccchhhhhhcc
Confidence            3456666 666666555555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.93  E-value=0.38  Score=43.95  Aligned_cols=78  Identities=22%  Similarity=0.435  Sum_probs=63.1

Q ss_pred             CCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh-hc--
Q 014041           61 TNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR-KH--  135 (432)
Q Consensus        61 ~k~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~-H~--  135 (432)
                      ...|.|.+  |-..|.....+..|..+-+             +   -.|.+|       .+.|.+...|..|+.. |.  
T Consensus        77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h-------------~---~sCs~C-------~r~~Pt~hLLd~HI~E~HDs~  133 (253)
T KOG4173|consen   77 VPAFACQVAGCCQVFDALDDYEHHYHTLH-------------G---NSCSFC-------KRAFPTGHLLDAHILEWHDSL  133 (253)
T ss_pred             cccccccccchHHHHhhhhhHHHhhhhcc-------------c---chhHHH-------HHhCCchhhhhHHHHHHHHHH
Confidence            45688986  8899998888888854443             2   478888       9999999999999875 32  


Q ss_pred             -------CCCcccc--cccccccCChHHhhhhhcc
Q 014041          136 -------GEKKWKC--EKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       136 -------gekp~~C--~~C~k~F~~~~~L~~H~~~  161 (432)
                             |...|.|  ..|+.+|.+...-+.|+-.
T Consensus       134 Fqa~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~  168 (253)
T KOG4173|consen  134 FQALVERGQDMYQCLVEGCTEKFKTSRDRKDHMIR  168 (253)
T ss_pred             HHHHHHcCccHHHHHHHhhhhhhhhhhhhhhHHHH
Confidence                   4557999  5599999999999999887

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=84.23  E-value=1  Score=37.31  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=21.9

Q ss_pred             eee----c-CCCccCCchHHHHHHHHhcc
Q 014041          167 YRC----D-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       167 ~~C----~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      |.|    . |++.+.+...+.+|.+.+|+
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            899    7 99999999999999998764

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=83.31  E-value=0.52  Score=30.24  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=18.1

Q ss_pred             CcCCCCCCCCCCChhhhhcCccccCCCCceeccccccc
Q 014041           35 KRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKG   72 (432)
Q Consensus        35 k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~   72 (432)
                      .|+|.+||-.+....            .++.|++||..
T Consensus         1 ~~~C~~CGy~y~~~~------------~~~~CP~Cg~~   26 (33)
T cd00350           1 KYVCPVCGYIYDGEE------------APWVCPVCGAP   26 (33)
T ss_pred             CEECCCCCCEECCCc------------CCCcCcCCCCc
Confidence            378888987644322            67899999863

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=82.01  E-value=0.85  Score=43.06  Aligned_cols=44  Identities=25%  Similarity=0.636  Sum_probs=18.4

Q ss_pred             ccccccccccCChHHhhhhhcccCCcceeec-CCCccCCchHHHHHH
Q 014041          140 WKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHR  185 (432)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~~~~k~~~C~-C~~~F~~~~~L~~H~  185 (432)
                      |.|++||..... ..+.+|+..+...-|.|- |++.|-+ ..+..|.
T Consensus         4 FtCnvCgEsvKK-p~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVKK-PQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhccc-cchHHHHHhccCCeeEEeeccccccc-chhhhhh
Confidence            444444444332 233444444222444453 5555544 3334443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.79  E-value=0.62  Score=43.64  Aligned_cols=42  Identities=21%  Similarity=0.545  Sum_probs=27.2

Q ss_pred             CCcccccccccccCChHHhhhhhcc-c----------CCcc-----eeec-CCCccCCc
Q 014041          137 EKKWKCEKCSKKYAVQSDWKAHSKI-C----------GTRE-----YRCD-CGTLFSRK  178 (432)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~-~----------~~k~-----~~C~-C~~~F~~~  178 (432)
                      +|.++|++|++.|.++.-+....|. .          +..|     ..|+ ||..|...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            4567788888888777655555543 1          1222     5799 99887655

>KOG3982 consensus Runt and related transcription factors [Transcription]

Probab=81.43  E-value=0.99  Score=44.73  Aligned_cols=9  Identities=44%  Similarity=0.770  Sum_probs=4.2

Q ss_pred             HHHHHhhcc
Q 014041          412 QELAKFMNL  420 (432)
Q Consensus       412 ~~~~~~~~~  420 (432)
                      ...|||.-+
T Consensus       176 nQVAkFNDL  184 (475)
T KOG3982|consen  176 NQVAKFNDL  184 (475)
T ss_pred             hhhhhhccc
Confidence            344555543

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=80.94  E-value=2.3  Score=41.34  Aligned_cols=55  Identities=22%  Similarity=0.383  Sum_probs=40.7

Q ss_pred             CCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        31 ~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .+.|.-.|-+|..+|+...+-..-.  .+...+|.|+.|...|-..-....|...|.
T Consensus       358 ~~~ks~~Cf~CQ~~fp~~~~~~~~~--~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~  412 (421)
T COG5151         358 TNPKSTHCFVCQGPFPKPPVSPFDE--STSSGRYQCELCKSTFCSDCDVFIHETLHF  412 (421)
T ss_pred             CCCCCccceeccCCCCCCCCCcccc--cccccceechhhhhhhhhhhHHHHHHHHhh
Confidence            4556777999999998744322222  233457999999999999999999988775

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=80.88  E-value=0.87  Score=32.69  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=26.4

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .+-.+|.-+.|+-||+.|.....+.+|+..-+
T Consensus        10 ~~RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          10 RDRDGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             eccCCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            34567888999999999999999999965433

>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]

Probab=80.60  E-value=1.1  Score=50.36  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=18.3

Q ss_pred             HHHHHHhhhhccccHHHHHHHHHHhcCCCCCC
Q 014041          280 QQQQQQQQGLAHMSATALLQKAAQMGSTRSNA  311 (432)
Q Consensus       280 QQQQQQQQqqq~~s~~~l~q~~~q~~s~~s~s  311 (432)
                      +|+|++||++.+..+++++++.-+++...+.+
T Consensus      1435 ~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s 1466 (1517)
T KOG1883|consen 1435 SQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMS 1466 (1517)
T ss_pred             hHHHHHHHHhcchHHHHHHHhccccceeeecC
Confidence            33333444444555566666777777766665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	432
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-09
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	8e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	2e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-07
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	1e-06
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	3e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	7e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	7e-06
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	2e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	3e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	3e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	6e-05
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-05
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	1e-04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	1e-04
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	3e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	3e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	4e-04
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	4e-04
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	5e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	5e-04
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	6e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 54.4 bits (132), Expect = 2e-09
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 64  FLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL 121
           F+C    CNK + +  +LQ+H R H         T +    K Y C  K C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH---------TGE----KPYQCDFKDC-----ERRF 48

Query: 122 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFS 176
                +K+H  R+H G K ++C+ C +K++     K H++   G + + C    C   F+
Sbjct: 49  SRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 177 RKDSFITH 184
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHS 159
           + ++C    C     ++    L+ ++ H SRKH GEK ++C+   C ++++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 160 KI-CGTREYRCD-CGTLFSRKDSFITHR 185
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHS 159
           +  +   CP K C     ++   D + ++KH    HG +   C +C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 160 KI-CGTREYRC---DCGTLFSRKDSFITH 184
            +  G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 29/126 (23%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
            + C K F+ +  ++ H   H                +V++C E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 126 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFSRK 178
            +K+H    H GEK ++C  E C K++++  + + H +I  G R Y C    C   F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 179 DSFITH 184
            +  +H
Sbjct: 108 TNLKSH 113

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 30/128 (23%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
              + C++ F   + L  H           +  + E  +K ++C    C      R    
Sbjct: 4   CRWDGCSQEFDSQEQLVHHIN--------SEHIHGE--RKEFVCHWGGCS--RELRPFKA 51

Query: 124 LTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFS 176
              +  H  R+H GEK  KC  E C K Y+   + K H +   G + Y C    C   FS
Sbjct: 52  QYMLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFS 110

Query: 177 RKDSFITH 184
                  H
Sbjct: 111 NASDRAKH 118

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 21/96 (21%)

Query: 69  CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK 128
           C K + R +NL+ H R H         T     +K Y+C  + C     S+A  + +   
Sbjct: 75  CRKSYSRLENLKTHLRSH---------TG----EKPYMCEHEGC-----SKAFSNASDRA 116

Query: 129 KHFSRKH-GEKKWKCEK--CSKKYAVQSDWKAHSKI 161
           KH +R H  EK + C+   C+K+Y   S  + H K 
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 30/126 (23%), Positives = 37/126 (29%), Gaps = 26/126 (20%)

Query: 67  EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTG 126
           E C KGF    +L  H   H               +K + C    C              
Sbjct: 48  EGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGC-----DLRFTTKAN 89

Query: 127 IKKHFSRKHGEKKW--KC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLFSRK 178
           +KKHF+R H  K     C  E C K +   +  K H         Y C    C   FS  
Sbjct: 90  MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149

Query: 179 DSFITH 184
                H
Sbjct: 150 SRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 32/134 (23%)

Query: 63  RFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRA 120
           R++C    C   + ++  LQ H   H         T     +K + C E+ C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH---------TG----EKPFPCKEEGC-----EKG 53

Query: 121 LGDLTGIKKHFSRKH-GEKKWKCE--KCSKKYAVQSDWKAHSKICGTRE----YRC---D 170
              L  + +H S  H GEK + C+   C  ++  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRH-SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 171 CGTLFSRKDSFITH 184
           CG  F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 45.5 bits (109), Expect = 1e-06
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
           + Y CP +SC      R       + +H  R H G+K ++C  C + ++       H + 
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 162 -CGTREYRCD-CGTLFSRKDSFITHR 185
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 22/94 (23%)

Query: 69  CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK 128
           C++ F +  +L  H R H         T +    K + C    C      R       + 
Sbjct: 12  CDRRFSQSGSLTRHIRIH---------TGQ----KPFQCRI--C-----MRNFSRSDHLT 51

Query: 129 KHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
            H  R H GEK + C+ C +K+A   + K H+KI
Sbjct: 52  TH-IRTHTGEKPFACDICGRKFARSDERKRHTKI 84

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
           F C IC + F R  +L  H R H         T     +K + C    C      R    
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH---------TG----EKPFACDI--C-----GRKFAR 43

Query: 124 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH 158
               K+H            +K  +  +     +  
Sbjct: 44  SDERKRH-RDIQHILPILEDKVEELLSKNYHLENE 77

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKIC---GTREYRC-DCGTLFSRKDSFITHR 185
               GE  ++C+ CS+ Y   S++  H         + Y C  C   F+RKD+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 128 KKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE----YRCD-CGTLFSRKDSF 181
                R H GEK ++C  C  ++      K H       E    + C  C T+ +RK   
Sbjct: 4   GSS-GRTHSGEKPYECYICHARFTQSGTMKMHILQ-KHTENVAKFHCPHCDTVIARKSDL 61

Query: 182 ITH 184
             H
Sbjct: 62  GVH 64

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRA 186
                    KC +CS   + ++  + H +I C  R ++C+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
            E C K F++   L++H+  H         T     +  Y CP + C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH---------TQ----QLPYECPHEGC-----DKRFSLPS 47

Query: 126 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSK 160
            +K+H  + H G    K + CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSK 160
           +Y+C  ++C      +A      +K H    H  +  ++C  E C K++++ S  K H K
Sbjct: 1   MYVCHFENC-----GKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK 54

Query: 161 I-CGTREYRCD-CGTLFSRKDSFITHR 185
           +  G    + D C  +      ++ H 
Sbjct: 55  VHAGYPCKKDDSCSFVGKTWTLYLKHV 81

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 136 GEKKWKCEKCSKKYAVQSDWKAHSKI----CGTREYRCD-CGTLFSRKDSFITHR 185
           G    +CE C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 45/98 (45%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD 123
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKH------------------------------------- 30

Query: 124 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI 161
                   +      ++ CE C K++       AH   
Sbjct: 31  --------AETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 11/97 (11%)

Query: 94  QRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH-GEKKWKC--EKCSKKYA 150
                  +++++ C    C     ++     + +K H  R H GEK +KC  E C  ++A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 151 VQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHR 185
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 64  FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL 121
             C+   C K + +  +L+ H R H               +K Y C  + C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-----DWRF 57

Query: 122 GDLTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 64  FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPS-RALG 122
              + C++ F     L  H                   +  ++C  + C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 123 DLTGIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC---DCGTLF 175
            L     H  R H GEK + C    C K +A   + K H +   G + ++C    C   F
Sbjct: 77  KL---VNH-IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 176 SRKDSFITH 184
           +       H
Sbjct: 133 ANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
           C    K F+    L  H R H         T +    K + CP   C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH---------TGE----KPFPCPFPGC-----GKIFARSE 106

Query: 126 GIKKHFSRKH-GEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRCD 170
            +K H  R H GEK +KC  E C +++A  SD K H  +    +     
Sbjct: 107 NLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 30/125 (24%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C  C K F R  +L  H+R H         T     +K Y CPE  KS           D
Sbjct: 24  CPECGKSFSRSDHLAEHQRTH---------T----GEKPYKCPECGKSFSDK------KD 64

Query: 124 LTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YRC-DCGTLFSRKD 179
           LT   +H  R H GEK +KC +C K ++ +++ +AH +   T E  Y C +CG  FS+  
Sbjct: 65  LT---RH-QRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLA 119

Query: 180 SFITH 184
               H
Sbjct: 120 HLRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 30/126 (23%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C  C K F   ++L  H+R H               +K Y CPE  KS           +
Sbjct: 52  CPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPECGKSFSQR------AN 92

Query: 124 LTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKICGTRE--YRC-DCGTLFSRKD 179
           L     H  R H GEK + C +C K ++  +  +AH +   T E  Y+C +CG  FSR+D
Sbjct: 93  LR---AH-QRTHTGEKPYACPECGKSFSQLAHLRAHQRT-HTGEKPYKCPECGKSFSRED 147

Query: 180 SFITHR 185
           +  TH+
Sbjct: 148 NLHTHQ 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 28/124 (22%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGD 123
           C  C K F +  NL+ H+R H               +K Y CPE  KS            
Sbjct: 80  CPECGKSFSQRANLRAHQRTHT-------------GEKPYACPECGKSFSQL------AH 120

Query: 124 LTGIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDS 180
           L     H  R H GEK +KC +C K ++ + +   H +   G + Y+C +CG  FSR+D+
Sbjct: 121 LR---AH-QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDA 176

Query: 181 FITH 184
              H
Sbjct: 177 LNVH 180

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITHR 185
                +K +KC++C   +  + +  +H  +  G + YRC  CG  F+R  +  TH 
Sbjct: 10  HMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 126 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFI 182
           G     S  H GEK + C +C K ++  S    H ++  G + Y+C +CG  FS+    I
Sbjct: 1   GSSGS-SGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59

Query: 183 THR 185
            H+
Sbjct: 60  NHQ 62

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 45/134 (33%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
           C  C+K F     L++H R H               +K + CP+  C         G   
Sbjct: 10  CPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPK--C---------G--- 42

Query: 126 GIKKHFSRK-----H--------GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-D 170
              K + RK     H         E+ + C  C + +  + + + H     G   Y+C  
Sbjct: 43  ---KCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99

Query: 171 CGTLFSRKDSFITH 184
           C   F +K    +H
Sbjct: 100 CSQQFMQKKDLQSH 113

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 129 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFS 176
           K FSRK         H G K +KC+ C    A  S    H +I    R ++C  C     
Sbjct: 16  KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75

Query: 177 RKDSFITHR 185
                  H 
Sbjct: 76  NSSQLTVHL 84

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.6 bits (91), Expect = 3e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 136 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITHR 185
                KCE C K ++ +   K H +   G + Y+C  C    +   S   H 
Sbjct: 5   SSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 66  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLT 125
              C K + +  +L+ H R H               +K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-----GWKFARSD 51

Query: 126 GIKKHFSRKH-GEKKWKCEKCSKKYAVQSDWKAHSKI 161
            + +H+ RKH G + ++C+KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)

Query: 133 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD---CGTLFSRKDSFITHR 185
           ++          C K Y   S  KAH +   G + Y CD   CG  F+R D    H 
Sbjct: 1   KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 124 LTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFI 182
            +G   H   +   +   C+ C  +       K H   CG R   C  CG     KD   
Sbjct: 2   SSGSSGHEETECPLRLAVCQHCDLEL-SILKLKEHEDYCGARTELCGNCGRNVLVKD-LK 59

Query: 183 THRAFCD 189
           TH   C 
Sbjct: 60  THPEVCG 66

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITH 184
             H   + + C+ C K++  +SD K H+ I  G + ++C  CG  FS+  + ITH
Sbjct: 22  LIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 37.8 bits (89), Expect = 5e-04
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 133 RKH-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFSRKDSFITH 184
            +    +++KC++C K ++  SD   H +   G + Y+C +CG  F ++   I H
Sbjct: 11  WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 129 KHFSRK---------H-GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC-DCGTLFS 176
           +HF++          H  E+ + C+ C K +  Q   + H  I    + ++C +CG  F 
Sbjct: 25  RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84

Query: 177 RKDSFITHR 185
           +  +   H+
Sbjct: 85  QSRTLAVHK 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	432
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.95
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.92
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.88
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.88
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.86
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.78
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.77
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.77
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.77
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.76
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.74
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.74
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.73
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.73
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.73
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.71
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.7
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.69
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.69
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.67
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.66
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.66
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.63
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.63
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.63
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.62
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.59
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.57
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.57
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.56
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.55
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.54
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.52
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.52
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.51
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.5
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.49
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.49
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.48
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.48
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.47
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.46
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.45
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.44
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.4
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.39
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.39
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.38
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.37
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.36
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.36
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.34
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.34
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.34
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.33
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.32
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.32
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.31
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.29
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.28
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.26
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.24
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.22
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.21
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.19
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.18
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.16
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.16
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.16
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.15
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.15
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.15
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.15
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.14
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.14
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.14
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.14
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.14
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.13
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.13
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.13
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.13
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.13
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.12
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.09
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.08
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.06
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.05
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.05
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.04
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.04
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.03
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.03
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.02
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.02
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.02
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.02
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.02
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.02
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.01
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.01
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.01
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.01
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.01
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.0
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.0
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.0
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.0
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.0
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.99
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.99
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.99
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.99
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.99
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.99
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.99
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.98
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.98
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.98
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.98
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.98
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.98
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.98
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.98
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.97
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.97
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.97
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.97
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.97
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.97
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.97
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.97
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.97
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.97
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.97
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.97
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.97
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.96
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.95
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.95
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.95
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.95
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.95
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.94
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.94
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.94
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.94
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.94
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.94
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.94
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.94
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.93
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.92
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.92
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.92
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.92
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.91
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.91
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.87
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.86
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.85
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.85
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.83
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.83
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.83
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.82
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.81
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.8
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.8
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.8
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.79
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.79
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.78
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.75
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.75
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.75
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.75
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.74
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.74
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.74
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.73
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.72
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.72
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.7
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.7
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.67
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.66
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.66
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.63
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.63
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.6
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.57
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.57
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.53
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.52
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.51
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.49
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.41
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.38
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.37
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.36
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.35
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.34
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.33
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.31
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.29
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.28
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.27
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.25
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.2
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.2
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.19
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.19
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.12
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.12
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.11
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.1
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.08
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.08
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.08
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.06
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.05
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.05
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.03
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.26
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.0
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.0
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.98
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.96
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.93
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.16
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.16
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.92
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.9
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.88
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.88
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.86
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.84
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.77
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.75
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.73
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.71
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.7
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.7
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.69
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.68
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.66
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.65
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.63
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.63
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.62
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.6
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.5
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.62
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.58
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.44
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.38
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.36
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.33
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.29
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.13
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.96
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.67
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	96.07
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.66
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.27
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.24
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.81
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.53
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.46
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	88.1
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	87.99
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	86.38
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	82.94
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	82.62
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	80.27
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.22

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=2.2e-32  Score=249.04  Aligned_cols=169  Identities=24%  Similarity=0.512  Sum_probs=142.6

Q ss_pred             CCCCCCCCCCCCCcCcCCCCCCCCCCCCCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHH
Q 014041            3 SQDHGLSVPSTLKGFVQEPNSNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLH   82 (432)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H   82 (432)
                      +++++|.|+.|++.|.....+..|...+.++++|+|+.|++.|.....|..|++.|.++++|+|++|++.|.....|..|
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H   96 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH   96 (190)
T ss_dssp             --------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHH
Confidence            45667999999999998887878888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-
Q 014041           83 RRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-  161 (432)
Q Consensus        83 ~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-  161 (432)
                      ++.|+             ++++|.|++|       ++.|.+...|..|+++|+++++|+|++|++.|.....|..|+++ 
T Consensus        97 ~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H  156 (190)
T 2i13_A           97 QRTHT-------------GEKPYACPEC-------GKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH  156 (190)
T ss_dssp             HHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHH
T ss_pred             HHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhc
Confidence            99998             8899999999       99999999999999999999999999999999999999999999 


Q ss_pred             cCCcceeec-CCCccCCchHHHHHHHHhccc
Q 014041          162 CGTREYRCD-CGTLFSRKDSFITHRAFCDAL  191 (432)
Q Consensus       162 ~~~k~~~C~-C~~~F~~~~~L~~H~~~h~~~  191 (432)
                      +++++|.|+ |++.|.++..|..|+++|++.
T Consensus       157 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~  187 (190)
T 2i13_A          157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGK  187 (190)
T ss_dssp             HCCCCEECTTTCCEESSHHHHHHHHTTC---
T ss_pred             CCCCCeECCCCCCccCCHHHHHHHHHhcCCC
Confidence            899999999 999999999999999998764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.95  E-value=1.6e-28  Score=223.36  Aligned_cols=161  Identities=23%  Similarity=0.444  Sum_probs=129.6

Q ss_pred             CCCCCCCCCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCC
Q 014041           23 SNPNPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRK  102 (432)
Q Consensus        23 ~~~~~~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~  102 (432)
                      +..+...+.++++|+|++|++.|.....|..|++.|.++++|+|++|++.|.....|..|++.|.             ++
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~   75 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT-------------GE   75 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH-------------CC
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC-------------CC
Confidence            34455566778999999999999999999999999999999999999999999999999999998             88


Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchH
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDS  180 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~  180 (432)
                      ++|.|++|       ++.|.....|..|++.|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.+...
T Consensus        76 ~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~  148 (190)
T 2i13_A           76 KPYKCPEC-------GKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDN  148 (190)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHH
T ss_pred             CCccCccc-------CCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHH
Confidence            99999999       99999999999999999999999999999999999999999999 899999999 9999999999


Q ss_pred             HHHHHHHhcccccccccccCCCC
Q 014041          181 FITHRAFCDALAEESARFTTISS  203 (432)
Q Consensus       181 L~~H~~~h~~~~~~~~~~~~~s~  203 (432)
                      |..|+++|.+.....+..+....
T Consensus       149 L~~H~~~H~~~~~~~C~~C~~~f  171 (190)
T 2i13_A          149 LHTHQRTHTGEKPYKCPECGKSF  171 (190)
T ss_dssp             HHHHHHHHHCCCCEECTTTCCEE
T ss_pred             HHHHHHhcCCCCCeECCCCCCcc
Confidence            99999999987777776665544

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.94  E-value=1.7e-27  Score=216.68  Aligned_cols=165  Identities=18%  Similarity=0.316  Sum_probs=144.7

Q ss_pred             CCCCCCC--CCCCCcCcCCCCCCCCCCCCCCCCCcCC--CCCCCCCCChhhhhcCccccCCCCceecc--cccccccChH
Q 014041            4 QDHGLSV--PSTLKGFVQEPNSNPNPNPSSNQLKRKR--NLPGTPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQ   77 (432)
Q Consensus         4 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~k~~c--~~cg~~~~~~~~l~~h~~~h~~~k~f~C~--~Cgk~F~~~~   77 (432)
                      +++.|.|  +.|++.|.....+..|...+.++++|+|  ++|++.|.....|..|+++|.++++|.|+  +|++.|.+..
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHH
Confidence            3456999  7999999988777777777778889999  88999999999999999999999999999  8999999999


Q ss_pred             HHHHHH-HhcCCCcccccccccccCCcceeC--CCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc--cccccCCh
Q 014041           78 NLQLHR-RGHNLPWKLKQRTNKEVRKKVYIC--PEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQ  152 (432)
Q Consensus        78 ~L~~H~-r~H~~~~~~~~~~~~~~~~k~y~C--~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~--C~k~F~~~  152 (432)
                      .|..|+ +.|.            .++++|.|  +.|       ++.|.+...|..|+++|++++||+|++  |++.|...
T Consensus        89 ~l~~H~~~~h~------------~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~  149 (190)
T 1tf6_A           89 NMKKHFNRFHN------------IKICVYVCHFENC-------GKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP  149 (190)
T ss_dssp             HHHHHHHTTSS------------TTTSCCEECSSSS-------CEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSH
T ss_pred             HHHHHHHHhcC------------CCcceeeCCCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCH
Confidence            999998 5663            26788999  778       999999999999999999999999987  99999999


Q ss_pred             HHhhhhhcc-cCCcceeec----CCCccCCchHHHHHHHHhcc
Q 014041          153 SDWKAHSKI-CGTREYRCD----CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       153 ~~L~~H~~~-~~~k~~~C~----C~~~F~~~~~L~~H~~~h~~  190 (432)
                      ..|..|+++ ++   |.|+    |++.|.+...|..|+++|++
T Consensus       150 ~~L~~H~~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~~  189 (190)
T 1tf6_A          150 SRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECHQ  189 (190)
T ss_dssp             HHHHHHHTSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHhCC---CcCCCCCcCCCccccHHHHHHHHHhhcC
Confidence            999999999 55   7773    99999999999999998864

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=1.3e-25  Score=196.98  Aligned_cols=138  Identities=21%  Similarity=0.365  Sum_probs=128.9

Q ss_pred             CCCcCCCCCCCCCCChhhhhcCcc---ccCCCCceecccc-----cccccChHHHHHHHHhcCCCcccccccccccCCcc
Q 014041           33 QLKRKRNLPGTPDPDAEVIALSPK---SLMATNRFLCEIC-----NKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKV  104 (432)
Q Consensus        33 ~~k~~c~~cg~~~~~~~~l~~h~~---~h~~~k~f~C~~C-----gk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~  104 (432)
                      +.+++|+.|++.|.+...|..|++   +|.++++|+|++|     ++.|.....|..|++.|+             ++++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~   67 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKP   67 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCC
Confidence            468999999999999999999998   7999999999864     499999999999999998             8899


Q ss_pred             eeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc--cccccCChHHhhhhh-cc-cCCcceeec---CCCcc
Q 014041          105 YICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHS-KI-CGTREYRCD---CGTLF  175 (432)
Q Consensus       105 y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~--C~k~F~~~~~L~~H~-~~-~~~k~~~C~---C~~~F  175 (432)
                      |.|++  |       ++.|.+...|..|++.|+++++|+|++  |++.|.....|..|+ ++ .++++|.|+   |++.|
T Consensus        68 ~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           68 HKCTFEGC-------RKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             CCCCSTTC-------CCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             ccCCCCCC-------CCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            99986  7       999999999999999999999999998  999999999999999 66 789999994   99999


Q ss_pred             CCchHHHHHHHHhcc
Q 014041          176 SRKDSFITHRAFCDA  190 (432)
Q Consensus       176 ~~~~~L~~H~~~h~~  190 (432)
                      .+...|..|+++|++
T Consensus       141 ~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          141 TDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHhhcC
Confidence            999999999999864

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.92  E-value=2.6e-25  Score=202.14  Aligned_cols=141  Identities=21%  Similarity=0.306  Sum_probs=131.0

Q ss_pred             CCCCCCcCC--CCCCCCCCChhhhhcCccccCCCCceec--ccccccccChHHHHHHHHhcCCCcccccccccccCCcce
Q 014041           30 SSNQLKRKR--NLPGTPDPDAEVIALSPKSLMATNRFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVY  105 (432)
Q Consensus        30 ~~~~~k~~c--~~cg~~~~~~~~l~~h~~~h~~~k~f~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y  105 (432)
                      +...++|+|  +.||+.|.....|..|++.|.++++|.|  ++|++.|.....|..|+++|.             ++++|
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~   73 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNF   73 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCE
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCce
Confidence            345788999  7999999999999999999999999999  899999999999999999998             88999


Q ss_pred             eCC--CCCCCCCCCCCccCCHHHHHHHH-hhh-cCCCcccc--cccccccCChHHhhhhhcc-cCCcceee--c-CCCcc
Q 014041          106 ICP--EKSCVHHDPSRALGDLTGIKKHF-SRK-HGEKKWKC--EKCSKKYAVQSDWKAHSKI-CGTREYRC--D-CGTLF  175 (432)
Q Consensus       106 ~C~--~C~c~~~~c~k~f~~~~~L~~H~-~~H-~gekp~~C--~~C~k~F~~~~~L~~H~~~-~~~k~~~C--~-C~~~F  175 (432)
                      .|+  .|       ++.|.+...|..|+ +.| .++++|+|  ++|++.|.....|..|+++ +++++|.|  + |++.|
T Consensus        74 ~C~~~~C-------~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F  146 (190)
T 1tf6_A           74 TCDSDGC-------DLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRF  146 (190)
T ss_dssp             ECCSSSC-------CCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBC
T ss_pred             eCCCCCC-------CCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchh
Confidence            999  77       99999999999999 556 47899999  8999999999999999999 89999999  5 99999


Q ss_pred             CCchHHHHHHHHhcc
Q 014041          176 SRKDSFITHRAFCDA  190 (432)
Q Consensus       176 ~~~~~L~~H~~~h~~  190 (432)
                      .+...|.+|+++|.+
T Consensus       147 ~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          147 SLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SSHHHHHHHHTSSCS
T ss_pred             cCHHHHHHHHHHhCC
Confidence            999999999999876

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.89  E-value=2.9e-24  Score=185.14  Aligned_cols=110  Identities=20%  Similarity=0.322  Sum_probs=101.6

Q ss_pred             hhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHH
Q 014041           51 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKH  130 (432)
Q Consensus        51 l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H  130 (432)
                      +..|.++|.|+++|+|++||+.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|
T Consensus        10 ~~h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H   69 (133)
T 2lt7_A           10 DDHYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYC-------EKVFPLAEYRTKH   69 (133)
T ss_dssp             SSEEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSS-------SCEESSHHHHHHH
T ss_pred             HhhceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCcc-------Ceecccccchhhh
Confidence            4556778999999999999999999999999999998             8999999999       9999999999999


Q ss_pred             HhhhcCCCcccccccccccCChHHhhhhhcc-cCC------cceeec-CCCccCCchH
Q 014041          131 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT------REYRCD-CGTLFSRKDS  180 (432)
Q Consensus       131 ~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~------k~~~C~-C~~~F~~~~~  180 (432)
                      +++|++++||.|++|++.|.....|..|+++ |++      ++|+|+ |++.|.....
T Consensus        70 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~~  127 (133)
T 2lt7_A           70 EIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQYA  127 (133)
T ss_dssp             HHHHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCCH
T ss_pred             ccccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhccc
Confidence            9999999999999999999999999999999 776      459999 9999976543

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=2e-23  Score=174.54  Aligned_cols=110  Identities=28%  Similarity=0.682  Sum_probs=96.4

Q ss_pred             CCCCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041           59 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus        59 ~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      +++++|+|++  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDC-------ERRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCC-------cCccCCHHHHHHHHHHc
Confidence            4678899987  9999999999999988887             77889998  57       89999999999999999


Q ss_pred             cCCCcccccccccccCChHHhhhhhcc-cCCcceee--c-CCCccCCchHHHHHHHHh
Q 014041          135 HGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC--D-CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       135 ~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C--~-C~~~F~~~~~L~~H~~~h  188 (432)
                      +++++|.|++|++.|.....|..|+++ +++++|.|  + |++.|.+...|.+|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999988 78889999  7 999999999999998865

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=4.1e-23  Score=173.74  Aligned_cols=111  Identities=22%  Similarity=0.495  Sum_probs=73.5

Q ss_pred             CCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh---hc
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR---KH  135 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~---H~  135 (432)
                      +++++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.+...|..|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKC-------GKCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTT-------CCBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCC-------CchhcCHHHHHHHHhhhhcCC
Confidence            34566666666666666666666666666             5666666666       6666666666666664   35


Q ss_pred             CCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchHHHHHHHHhc
Q 014041          136 GEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCD  189 (432)
Q Consensus       136 gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~L~~H~~~h~  189 (432)
                      ++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.+...|.+|++.+|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            56666666666666666666666666 566666666 6666766666777766433

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.88  E-value=5.9e-23  Score=180.26  Aligned_cols=120  Identities=23%  Similarity=0.324  Sum_probs=109.0

Q ss_pred             CCCCCcCCCCCCCCCCChhhhhcCccc-cCCCCc--------eecccccccccChHHHHHHHHhcCCCcccccccccccC
Q 014041           31 SNQLKRKRNLPGTPDPDAEVIALSPKS-LMATNR--------FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVR  101 (432)
Q Consensus        31 ~~~~k~~c~~cg~~~~~~~~l~~h~~~-h~~~k~--------f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~  101 (432)
                      ...+.|.|.+|++.|.+...|..|++. |.++++        |.|++|++.|.....|..|+++|+             +
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------G   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------C
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------C
Confidence            456789999999999999999999987 777655        899999999999999999999998             8


Q ss_pred             CcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc--cccccCChHHhhhhhcc-cCCcceeec
Q 014041          102 KKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRCD  170 (432)
Q Consensus       102 ~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~--C~k~F~~~~~L~~H~~~-~~~k~~~C~  170 (432)
                      +++|.|++  |       ++.|.....|..|+++|+++++|+|.+  |++.|.....|..|+++ +++++|.|+
T Consensus        88 ~~~~~C~~~~C-------~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           88 EKPFPCPFPGC-------GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCSEECSCTTT-------CCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCcccCCcCCC-------CCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            89999998  7       999999999999999999999999997  99999999999999999 899999884

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=8.8e-23  Score=171.72  Aligned_cols=117  Identities=17%  Similarity=0.306  Sum_probs=108.2

Q ss_pred             CCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        31 ~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .+.++|+|++|++.|.....|..|++.|.++++|+|++|++.|.+...|..|++.|+.          +.++++|.|++|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~----------~~~~~~~~C~~C   72 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCM----------NRSEQVFTCSVC   72 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCC----------CSCCCCEECSSS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhc----------CCCCCCeECCCC
Confidence            4568999999999999999999999999999999999999999999999999997531          127889999999


Q ss_pred             CCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCC
Q 014041          111 SCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (432)
Q Consensus       111 ~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (432)
                             ++.|.....|..|+++|++++||+|++|++.|.....|..|++. |+.
T Consensus        73 -------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           73 -------QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             -------CCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             -------CCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence                   99999999999999999999999999999999999999999986 643

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=9.7e-24  Score=184.96  Aligned_cols=139  Identities=21%  Similarity=0.345  Sum_probs=126.9

Q ss_pred             CCCCCCCCCCCcCcCCCCCCCCCC---CCCCCCCcCCCCC-----CCCCCChhhhhcCccccCCCCceeccc--cccccc
Q 014041            5 DHGLSVPSTLKGFVQEPNSNPNPN---PSSNQLKRKRNLP-----GTPDPDAEVIALSPKSLMATNRFLCEI--CNKGFQ   74 (432)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~k~~c~~c-----g~~~~~~~~l~~h~~~h~~~k~f~C~~--Cgk~F~   74 (432)
                      |.++.|+.|++.|.....+..|..   .+.++++|+|++|     ++.|.....|..|++.|.++++|.|++  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            457899999999998877777764   5677888988753     499999999999999999999999986  999999


Q ss_pred             ChHHHHHHHHhcCCCcccccccccccCCcceeCCC--CCCCCCCCCCccCCHHHHHHHH-hhhcCCCcccccc--ccccc
Q 014041           75 RDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHF-SRKHGEKKWKCEK--CSKKY  149 (432)
Q Consensus        75 ~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~-~~H~gekp~~C~~--C~k~F  149 (432)
                      ....|..|+++|+             ++++|.|++  |       ++.|.+...|..|+ +.|.++++|+|++  |++.|
T Consensus        81 ~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f  140 (155)
T 2gli_A           81 RLENLKTHLRSHT-------------GEKPYMCEHEGC-------SKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRY  140 (155)
T ss_dssp             SHHHHHHHHHHTT-------------TCCCEECCSTTC-------CCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEE
T ss_pred             CHHHHHHHHHHcC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHhcCCCCCeeCCCCCCcccc
Confidence            9999999999998             889999998  7       99999999999999 7899999999998  99999


Q ss_pred             CChHHhhhhhcc-cC
Q 014041          150 AVQSDWKAHSKI-CG  163 (432)
Q Consensus       150 ~~~~~L~~H~~~-~~  163 (432)
                      .....|..|+++ ||
T Consensus       141 ~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          141 TDPSSLRKHVKTVHG  155 (155)
T ss_dssp             SSHHHHHHHHHHSCC
T ss_pred             CCHHHHHHHHHhhcC
Confidence            999999999998 54

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=1.5e-22  Score=169.24  Aligned_cols=112  Identities=21%  Similarity=0.398  Sum_probs=107.0

Q ss_pred             CCCCCcCCCC--CCCCCCChhhhhcCccccCCCCceecc--cccccccChHHHHHHHHhcCCCcccccccccccCCccee
Q 014041           31 SNQLKRKRNL--PGTPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (432)
Q Consensus        31 ~~~~k~~c~~--cg~~~~~~~~l~~h~~~h~~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (432)
                      .++++|+|.+  |++.|.....|..|++.|.++++|.|+  +|++.|.....|..|+++|+             ++++|.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~   68 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT-------------GVKPFQ   68 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------CCCCEE
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcC-------------CCCCcc
Confidence            4578999997  999999999999999999999999999  79999999999999999998             889999


Q ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc--cccccccCChHHhhhhhccc
Q 014041          107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC--EKCSKKYAVQSDWKAHSKIC  162 (432)
Q Consensus       107 C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C--~~C~k~F~~~~~L~~H~~~~  162 (432)
                      |++|       ++.|.+...|..|+++|+++++|+|  ++|++.|.....|..|+++|
T Consensus        69 C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           69 CKTC-------QRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CTTT-------CCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCcc-------CchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            9999       9999999999999999999999999  89999999999999999863

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=1.4e-22  Score=170.90  Aligned_cols=107  Identities=26%  Similarity=0.594  Sum_probs=51.3

Q ss_pred             Cceecc--cccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041           62 NRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus        62 k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      ++|+|+  +|++.|.+...|..|+++|              ++++|.|++|       ++.|.....|..|++.|+++++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~   62 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAEC-------GKAFVESSKLKRHQLVHTGEKP   62 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTT-------CCEESSHHHHHHHGGGTSCCCC
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCC
Confidence            344444  4555555444455554444              2334444444       4445555555555444444444


Q ss_pred             ccccc--cccccCChHHhhhhhcc-cCCcceee--c-CCCccCCchHHHHHHHHhc
Q 014041          140 WKCEK--CSKKYAVQSDWKAHSKI-CGTREYRC--D-CGTLFSRKDSFITHRAFCD  189 (432)
Q Consensus       140 ~~C~~--C~k~F~~~~~L~~H~~~-~~~k~~~C--~-C~~~F~~~~~L~~H~~~h~  189 (432)
                      |.|.+  |++.|.....|..|+++ +++++|.|  + |++.|.+...|..|+++|+
T Consensus        63 ~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             EECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             eeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            55543  55555554455555444 44444555  3 5555555555555554443

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.86  E-value=5.1e-22  Score=167.49  Aligned_cols=115  Identities=17%  Similarity=0.282  Sum_probs=103.2

Q ss_pred             CCCCcCCC--CCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           32 NQLKRKRN--LPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        32 ~~~k~~c~--~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      ++++|+|+  .|++.|.+...|..|+++| ++++|+|++|++.|.....|..|+++|+             ++++|.|.+
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~   67 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT-------------GEKPFQCTF   67 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS-------------CCCCEECCS
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCeeCCC
Confidence            35789999  9999999999999999999 8899999999999999999999999998             889999986


Q ss_pred             --CCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc--ccccccCChHHhhhhhcc-cCCcce
Q 014041          110 --KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREY  167 (432)
Q Consensus       110 --C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~--~C~k~F~~~~~L~~H~~~-~~~k~~  167 (432)
                        |       ++.|.....|..|+++|+++++|+|.  .|++.|.....|..|+++ ++++++
T Consensus        68 ~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           68 EGC-------GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TTC-------CCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCC-------cCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcccccC
Confidence              8       99999999999999999999999995  599999999999999999 788775

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.85  E-value=2.1e-22  Score=173.43  Aligned_cols=105  Identities=11%  Similarity=0.130  Sum_probs=98.4

Q ss_pred             CCCCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           28 NPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        28 ~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      ..+.++++|+|++||+.|.....|..|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C   81 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT-------------GERRYQC   81 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHH-------------TCCCEEE
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccC-------------CCccccC
Confidence            455788999999999999999999999999999999999999999999999999999998             8999999


Q ss_pred             CCCCCCCCCCCCccCCHHHHHHHHhhhcCCC------cccccccccccCCh
Q 014041          108 PEKSCVHHDPSRALGDLTGIKKHFSRKHGEK------KWKCEKCSKKYAVQ  152 (432)
Q Consensus       108 ~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek------p~~C~~C~k~F~~~  152 (432)
                      ++|       ++.|.....|..|+++|++++      +|+|.+|++.|...
T Consensus        82 ~~C-------~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           82 LAC-------GKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             SSS-------CCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             CCC-------CCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            999       999999999999999998764      58999999988754

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=3.4e-21  Score=168.96  Aligned_cols=123  Identities=19%  Similarity=0.308  Sum_probs=105.1

Q ss_pred             CCCCceecccccccccChHHHHHHHHh-cCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      .++++|.|++|++.|.+...|..|++. |.+.....     ......|.|++|       ++.|.....|..|+++|+++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~-----~~~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   88 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQN-----NHVCYWEECPRE-------GKSFKAKYKLVNHIRVHTGE   88 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCS-----SCCCCBTTCTTS-------SCCCSSHHHHHHHTHHHHCC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccC-----CccccccCCCCc-------ccccCCHHHHHHHHHhcCCC
Confidence            346789999999999999999999998 54110000     001123889998       99999999999999999999


Q ss_pred             Ccccccc--cccccCChHHhhhhhcc-cCCcceeec---CCCccCCchHHHHHHHHhccccc
Q 014041          138 KKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRCD---CGTLFSRKDSFITHRAFCDALAE  193 (432)
Q Consensus       138 kp~~C~~--C~k~F~~~~~L~~H~~~-~~~k~~~C~---C~~~F~~~~~L~~H~~~h~~~~~  193 (432)
                      ++|+|.+  |++.|.....|..|+++ +++++|.|+   |++.|.+...|.+|+++|++...
T Consensus        89 ~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A           89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             CSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             CcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            9999998  99999999999999999 899999997   99999999999999999987544

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.78  E-value=3.6e-19  Score=145.85  Aligned_cols=90  Identities=23%  Similarity=0.529  Sum_probs=59.3

Q ss_pred             CCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ..+++|.|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|++.|++++
T Consensus        13 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   72 (106)
T 2ee8_A           13 KTKKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDIC-------HKAFRRQDHLRDHRYIHSKEK   72 (106)
T ss_dssp             CCCCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSS-------CCBCSCHHHHHHHGGGSCCCC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCc-------cchhCCHHHHHHHHHHhCCCC
Confidence            34556666666666666666666666666             5666666666       666666666666666666666


Q ss_pred             cccccccccccCChHHhhhhhcc-cCCccee
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI-CGTREYR  168 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~  168 (432)
                      +|+|.+|++.|.....|..|+++ +++++|.
T Consensus        73 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~  103 (106)
T 2ee8_A           73 PFKCQECGKGFCQSRTLAVHKTLHMQTSSPT  103 (106)
T ss_dssp             TTSCSSSCCCCSSHHHHHHHHHHTTSCCCCC
T ss_pred             CeECCCcCCcccCHHHHHHHHHHhCCCCCCc
Confidence            66666666666666666666666 5566554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=5.1e-19  Score=142.13  Aligned_cols=89  Identities=27%  Similarity=0.482  Sum_probs=68.3

Q ss_pred             cCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus        58 h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      +.++++|+|++|++.|.....|..|++.|+             ++++|.|++|       ++.|.....|..|++.|+++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   62 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHT-------------GVKPYKCKTC-------DYAAADSSSLNKHLRIHSDE   62 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCC-------------CCCSEECSSS-------CCEESSHHHHHHHHHHSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHhCCC
Confidence            456677888888888888888888877777             6677888777       77888888888888777777


Q ss_pred             CcccccccccccCChHHhhhhhcc-cCCcc
Q 014041          138 KKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  166 (432)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~-~~~k~  166 (432)
                      ++|+|.+|++.|.....|..|+++ +++++
T Consensus        63 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           63 RPFKCQICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence            778888888888777777777777 55543

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.77  E-value=3.9e-19  Score=146.20  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=87.1

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHh
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS  132 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~  132 (432)
                      .+++.|+++++|+|++|++.|.....|..|+++|.               ++|.|++|       ++.|.....|..|++
T Consensus         6 s~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C-------~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A            6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYC-------SLRFFSPELKQEHES   63 (107)
T ss_dssp             CCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTT-------CCCBSSHHHHHHHHH
T ss_pred             ccCcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCC-------CCccCCHHHHHHHHH
Confidence            45778899999999999999999999999999985               57999999       999999999999996


Q ss_pred             hhcCCCcccccccccccCChHHhhhhhc-c-cCCcceeec
Q 014041          133 RKHGEKKWKCEKCSKKYAVQSDWKAHSK-I-CGTREYRCD  170 (432)
Q Consensus       133 ~H~gekp~~C~~C~k~F~~~~~L~~H~~-~-~~~k~~~C~  170 (432)
                       |++++||+|++|++.|.....|..|++ + .++++|.|.
T Consensus        64 -H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           64 -KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             -HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             -cCCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence             999999999999999999999999998 6 678888774

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=8.7e-20  Score=151.90  Aligned_cols=98  Identities=14%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             hhhhhcCccccCCCCceecccccccccChHHHHHHHHh--cCCCcccccccccccCCcc-eeCCCCCCCCCCCCCcc--C
Q 014041           48 AEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRG--HNLPWKLKQRTNKEVRKKV-YICPEKSCVHHDPSRAL--G  122 (432)
Q Consensus        48 ~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~--H~~~~~~~~~~~~~~~~k~-y~C~~C~c~~~~c~k~f--~  122 (432)
                      .+.|..|+++|+++++|+|++|++.|.....|..|+++  |.             +.++ +.|++|       ++.|  .
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C-------~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNN-------PKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCC-------CSCCSSC
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCC-------Ccccccc
Confidence            45678899999999999999999999999999999888  54             4444 347777       6666  7


Q ss_pred             CHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCc
Q 014041          123 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (432)
Q Consensus       123 ~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (432)
                      ....|..|+++|++++||+|++|++.|.....|..|+++ +...
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~  107 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQ  107 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTT
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcc
Confidence            777777777777777777777777777777777777776 4433

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.76  E-value=1.1e-18  Score=143.01  Aligned_cols=95  Identities=18%  Similarity=0.310  Sum_probs=90.1

Q ss_pred             CCCCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           28 NPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        28 ~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      .+...+++|+|.+|++.|.....|..|++.|.++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus        10 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C   76 (106)
T 2ee8_A           10 LPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS-------------KEKPFKC   76 (106)
T ss_dssp             CCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSC-------------CCCTTSC
T ss_pred             CCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhC-------------CCCCeEC
Confidence            445567899999999999999999999999999999999999999999999999999998             8899999


Q ss_pred             CCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          108 PEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       108 ~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      .+|       ++.|.....|..|+++|+++++|.+
T Consensus        77 ~~C-------~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           77 QEC-------GKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SSS-------CCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCc-------CCcccCHHHHHHHHHHhCCCCCCcC
Confidence            999       9999999999999999999999875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.74  E-value=1.8e-18  Score=137.01  Aligned_cols=86  Identities=26%  Similarity=0.546  Sum_probs=72.3

Q ss_pred             CCCceecc--cccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041           60 ATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus        60 ~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      ++++|.|+  .|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|++.|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHHHHHCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHcCCC
Confidence            35789997  59999999999999998887             7788999988       89999999999999999899


Q ss_pred             CcccccccccccCChHHhhhhhcc-cCCc
Q 014041          138 KKWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (432)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (432)
                      ++|+|.+|++.|.....|..|+++ ++++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999899888888 6654

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.74  E-value=4.4e-18  Score=136.33  Aligned_cols=85  Identities=25%  Similarity=0.484  Sum_probs=76.5

Q ss_pred             CCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC-
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE-  137 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge-  137 (432)
                      +++++|+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|++.|+++ 
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   62 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSV   62 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSC-------------SSCSEECSSS-------CCEESCHHHHHHHHHHHCCCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcC-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            56788999999999999999999999998             7889999998       99999999999999999987 


Q ss_pred             -CcccccccccccCChHHhhhhhcc-cC
Q 014041          138 -KKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       138 -kp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (432)
                       ++|+|.+|++.|.....|..|++. |.
T Consensus        63 ~~~~~C~~C~~~f~~~~~L~~H~~~~H~   90 (95)
T 2yt9_A           63 GKPYICQSCGKGFSRPDHLNGHIKQVHS   90 (95)
T ss_dssp             CSSBCCSSSCCCBSSHHHHHHHHHHTSC
T ss_pred             CCceECCCccchhCCHHHHHHHHHHhcC
Confidence             899999999999999999999875 54

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.6e-18  Score=135.97  Aligned_cols=92  Identities=14%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             CCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           30 SSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        30 ~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      +.++++|+|.+|++.|.....|..|++.|.++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~   69 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS-------------DERPFKCQI   69 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CCCCEECSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCC
Confidence            3567899999999999999999999999999999999999999999999999999998             889999999


Q ss_pred             CCCCCCCCCCccCCHHHHHHHHhhhcCCCccc
Q 014041          110 KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (432)
Q Consensus       110 C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~  141 (432)
                      |       ++.|.....|..|+++|+++++..
T Consensus        70 C-------~~~f~~~~~l~~H~~~h~~~~~p~   94 (96)
T 2dmd_A           70 C-------PYASRNSSQLTVHLRSHTGDSGPS   94 (96)
T ss_dssp             S-------SCEESSHHHHHHHHTTCCSCCCCC
T ss_pred             C-------CCccCCHHHHHHHHHHhcCCCCCC
Confidence            9       999999999999999999987643

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.73  E-value=2.9e-18  Score=133.29  Aligned_cols=79  Identities=32%  Similarity=0.577  Sum_probs=69.2

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ||+|++|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|++.|+++++|+|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYC-------GKRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSS-------CCEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcC-------ChhhCCHHHHHHHHHHhcCCCCCcC
Confidence            5888899999998888999988887             7788888888       8888888888889888888888888


Q ss_pred             cccccccCChHHhhhhhcc
Q 014041          143 EKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       143 ~~C~k~F~~~~~L~~H~~~  161 (432)
                      .+|++.|.....|..|+++
T Consensus        61 ~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHh
Confidence            8888888888888888877

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=3.8e-18  Score=140.71  Aligned_cols=84  Identities=18%  Similarity=0.372  Sum_probs=55.0

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      .|+++++|+| +|++.|.....|..|++.|.             ++++|.|++|       ++.|.....|..|+++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCC-------CcccCCHHHHHHHHHHcCC
Confidence            4566666666 66666666666666666666             5566666666       6666666666666666666


Q ss_pred             CCcccccccccccCChHHhhhhhcc
Q 014041          137 EKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +++|+|.+|++.|.....|..|+++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHH
Confidence            6666666666666666666655554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.8e-18  Score=143.90  Aligned_cols=98  Identities=12%  Similarity=0.194  Sum_probs=88.6

Q ss_pred             hHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh--hcCCCccc-cccccccc--C
Q 014041           76 DQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR--KHGEKKWK-CEKCSKKY--A  150 (432)
Q Consensus        76 ~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~--H~gekp~~-C~~C~k~F--~  150 (432)
                      ...|..|+++|+             ++++|.|++|       ++.|.....|..|++.  |.+++++. |.+|++.|  .
T Consensus         4 ~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~   63 (115)
T 2dmi_A            4 GSSGKLYGSIFT-------------GASKFRCKDC-------SAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKP   63 (115)
T ss_dssp             CCCCCCCCCCCC-------------CCCSEEBSSS-------SCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSC
T ss_pred             chhhhhheeeeC-------------CCCCEECCcc-------CchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccc
Confidence            345778888887             8999999999       9999999999999999  87787765 99999999  8


Q ss_pred             ChHHhhhhhcc-cCCcceeec-CCCccCCchHHHHHHHHhccccc
Q 014041          151 VQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSFITHRAFCDALAE  193 (432)
Q Consensus       151 ~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~L~~H~~~h~~~~~  193 (432)
                      ....|..|+++ +++++|.|+ |++.|.+...|.+|++.|+....
T Consensus        64 ~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~  108 (115)
T 2dmi_A           64 RKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQK  108 (115)
T ss_dssp             CCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTC
T ss_pred             cHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCccc
Confidence            99999999999 889999999 99999999999999999876543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.7e-17  Score=136.81  Aligned_cols=87  Identities=28%  Similarity=0.593  Sum_probs=82.5

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCC
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSR  177 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~  177 (432)
                      .++++|.| .|       ++.|.....|..|++.|+++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|.+
T Consensus         6 ~~~k~~~C-~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            6 SGDKLYPC-QC-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCCCEEC-TT-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCCCEec-cC-------CCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            48999999 88       99999999999999999999999999999999999999999999 899999999 9999999


Q ss_pred             chHHHHHHHHhcccccc
Q 014041          178 KDSFITHRAFCDALAEE  194 (432)
Q Consensus       178 ~~~L~~H~~~h~~~~~~  194 (432)
                      ...|.+|++.|+.....
T Consensus        78 ~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           78 RDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccccc
Confidence            99999999999875443

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.69  E-value=2.3e-17  Score=130.58  Aligned_cols=84  Identities=23%  Similarity=0.581  Sum_probs=78.3

Q ss_pred             CCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccC
Q 014041          101 RKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFS  176 (432)
Q Consensus       101 ~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~  176 (432)
                      ++++|.|+  .|       ++.|.....|..|++.|+++++|.|.+|++.|.....|..|+++ +++++|.|+ |++.|.
T Consensus         1 ~~k~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESC-------DRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSC-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCC-------CCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            36799998  47       99999999999999999999999999999999999999999999 899999999 999999


Q ss_pred             CchHHHHHHHHhccc
Q 014041          177 RKDSFITHRAFCDAL  191 (432)
Q Consensus       177 ~~~~L~~H~~~h~~~  191 (432)
                      +...|..|+++|.+.
T Consensus        74 ~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           74 RSDERKRHTKIHLRQ   88 (90)
T ss_dssp             SHHHHHHHHGGGGC-
T ss_pred             CHHHHHHHHHHhccc
Confidence            999999999999764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.2e-17  Score=137.35  Aligned_cols=95  Identities=16%  Similarity=0.115  Sum_probs=87.8

Q ss_pred             CCCCCCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcce
Q 014041           26 NPNPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVY  105 (432)
Q Consensus        26 ~~~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y  105 (432)
                      ....+.++++|+|.+|++.|.....|..|+++|  +++|+|++|++.|.....|..|++ |.             ++++|
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~-------------~~~~~   70 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KC-------------EYKKL   70 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HC-------------STGGG
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cC-------------CCCCc
Confidence            344567788999999999999999999999998  578999999999999999999996 88             89999


Q ss_pred             eCCCCCCCCCCCCCccCCHHHHHHHHh-hhcCCCccccc
Q 014041          106 ICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCE  143 (432)
Q Consensus       106 ~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H~gekp~~C~  143 (432)
                      .|++|       ++.|.....|..|++ .|.++++|.|.
T Consensus        71 ~C~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           71 TCLEC-------MRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             EEGGG-------TEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             cCccc-------cchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999       999999999999997 89999999884

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.69  E-value=2.9e-17  Score=127.56  Aligned_cols=79  Identities=24%  Similarity=0.553  Sum_probs=76.8

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchHH
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDSF  181 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~L  181 (432)
                      ||.|++|       ++.|.....|..|++.|+++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|.+...|
T Consensus         1 ~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKIC-------GKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSS-------CCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCC-------cccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            5899999       99999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHHHhc
Q 014041          182 ITHRAFCD  189 (432)
Q Consensus       182 ~~H~~~h~  189 (432)
                      ..|+++|+
T Consensus        74 ~~H~~~H~   81 (82)
T 2kmk_A           74 ITHSRKHT   81 (82)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.67  E-value=8.7e-17  Score=126.97  Aligned_cols=82  Identities=22%  Similarity=0.568  Sum_probs=73.1

Q ss_pred             CCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041           61 TNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus        61 ~k~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      .++|.|++  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGC-------GWKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTT-------CCEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCC-------CCccCCHHHHHHHHHHcCC
Confidence            46799998  9999999999999999988             78899997  47       9999999999999999999


Q ss_pred             CCcccccccccccCChHHhhhhhccc
Q 014041          137 EKKWKCEKCSKKYAVQSDWKAHSKIC  162 (432)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~~  162 (432)
                      +++|+|.+|++.|.....|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999998863

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.66  E-value=1.4e-16  Score=128.56  Aligned_cols=83  Identities=20%  Similarity=0.514  Sum_probs=69.7

Q ss_pred             CCCCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041           59 MATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus        59 ~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      ..+++|.|++  |++.|.....|..|++.|.             ++++|.|+  .|       ++.|.....|..|++.|
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h   70 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGC-------DWRFARSDELTRHYRKH   70 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSC-------CCEESSHHHHHHHHHHH
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------CCccCCHHHHHHHHHHh
Confidence            3456788886  8888888888888888887             77888886  46       88888888888888888


Q ss_pred             cCCCcccccccccccCChHHhhhhhcc
Q 014041          135 HGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       135 ~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +++++|+|.+|++.|.....|..|+++
T Consensus        71 ~~~~~~~C~~C~~~f~~~~~l~~H~~~   97 (100)
T 2ebt_A           71 TGAKPFQCGVCNRSFSRSDHLALHMKR   97 (100)
T ss_dssp             TSCCSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             CCCCCeECCCCcCccCCHHHHHHHHHH
Confidence            888888888888888888888888876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=7.1e-17  Score=129.20  Aligned_cols=87  Identities=20%  Similarity=0.343  Sum_probs=81.5

Q ss_pred             CCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCC--cceeCC
Q 014041           31 SNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRK--KVYICP  108 (432)
Q Consensus        31 ~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~--k~y~C~  108 (432)
                      .++++|+|.+|++.|.....|..|+++|.++++|+|++|++.|.....|..|++.|+             ++  ++|.|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~~~C~   69 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKPYICQ   69 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHC-------------CCCCSSBCCS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhc-------------CCCCCceECC
Confidence            467899999999999999999999999999999999999999999999999999998             54  899999


Q ss_pred             CCCCCCCCCCCccCCHHHHHHHHh-hhcCC
Q 014041          109 EKSCVHHDPSRALGDLTGIKKHFS-RKHGE  137 (432)
Q Consensus       109 ~C~c~~~~c~k~f~~~~~L~~H~~-~H~ge  137 (432)
                      +|       ++.|.+...|..|++ .|.++
T Consensus        70 ~C-------~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           70 SC-------GKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SS-------CCCBSSHHHHHHHHHHTSCCC
T ss_pred             Cc-------cchhCCHHHHHHHHHHhcCCC
Confidence            99       999999999999997 67765

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.9e-16  Score=122.37  Aligned_cols=84  Identities=15%  Similarity=0.304  Sum_probs=74.5

Q ss_pred             hhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHH
Q 014041           50 VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKK  129 (432)
Q Consensus        50 ~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~  129 (432)
                      ++..|+++|+++++|+|++|++.|.....|..|++.|+...         ..+++|.|++|       ++.|.....|..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~---------~~~~~~~C~~C-------~~~f~~~~~L~~   65 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN---------FVPAAFVCSKC-------GKTFTRRNTMAR   65 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS---------CCCCCEECSSS-------CCEESCHHHHHH
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc---------CCCcceECCCC-------CChhCCHHHHHH
Confidence            46789999999999999999999999999999999887210         01378999999       999999999999


Q ss_pred             HHhhhcCCCccccccccccc
Q 014041          130 HFSRKHGEKKWKCEKCSKKY  149 (432)
Q Consensus       130 H~~~H~gekp~~C~~C~k~F  149 (432)
                      |+++|++++++.|..|+..|
T Consensus        66 H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           66 HADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHccCCCCcccCCCCCCC
Confidence            99999999999999999865

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.63  E-value=3e-17  Score=130.08  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=64.4

Q ss_pred             CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcc
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKW  140 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~  140 (432)
                      +++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|++.|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDIC-------GRKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHhCC-Ccc
Confidence            467888888888888888888888887             7778888887       8888888888888888774 778


Q ss_pred             cccccccccCChHHhhhhhcc
Q 014041          141 KCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      .|+.|++.|.....|..|++.
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHH
Confidence            888888888888888888776

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.63  E-value=2e-16  Score=116.69  Aligned_cols=58  Identities=24%  Similarity=0.582  Sum_probs=48.1

Q ss_pred             CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ||||+|++|||.|.....|..|+++|+             +++||.|++|       ++.|.....|..|+++|+|++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~C-------~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHL-------------GYRPRSCPEC-------GKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHH-------------TCCCEECTTT-------CCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhC-------------CCcCeECCCC-------CCCcCCHHHHHHHhCccCCCC
Confidence            678888888888888888888888887             7888888888       888888888888888888764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=6.9e-16  Score=119.16  Aligned_cols=72  Identities=21%  Similarity=0.487  Sum_probs=66.2

Q ss_pred             CCCCceeccc--ccccccChHHHHHHHH-hcCCCcccccccccccCCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhh
Q 014041           59 MATNRFLCEI--CNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus        59 ~~~k~f~C~~--Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      +++++|.|+.  |++.|.....|..|++ .|.             ++++|.|++  |       ++.|.....|..|+++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~   62 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHI-------------HQKSFSCPEPAC-------GKSFNFKKHLKEHMKL   62 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGG-------------SCCCEECSCTTT-------CCEESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhC-------------CCCCeECCCCCC-------cCccCCHHHHHHHHHH
Confidence            5678899987  9999999999999998 687             889999998  8       9999999999999999


Q ss_pred             hcCCCcccccccccccC
Q 014041          134 KHGEKKWKCEKCSKKYA  150 (432)
Q Consensus       134 H~gekp~~C~~C~k~F~  150 (432)
                      |++++||+|.+|++.|.
T Consensus        63 H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A           63 HSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             HHTSCCCSCCSSSCCCC
T ss_pred             hCCCCCeeCCCCCCCCC
Confidence            99999999999999883

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.60  E-value=1.1e-15  Score=123.34  Aligned_cols=86  Identities=15%  Similarity=0.258  Sum_probs=81.2

Q ss_pred             CCCCCcCCCC--CCCCCCChhhhhcCccccCCCCceecc--cccccccChHHHHHHHHhcCCCcccccccccccCCccee
Q 014041           31 SNQLKRKRNL--PGTPDPDAEVIALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (432)
Q Consensus        31 ~~~~k~~c~~--cg~~~~~~~~l~~h~~~h~~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (432)
                      ...++|.|..  |++.|.....|..|+++|.++++|+|+  .|++.|.....|..|+++|+             ++++|.
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~   77 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT-------------GAKPFQ   77 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHT-------------SCCSCB
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhC-------------CCCCeE
Confidence            4567899997  999999999999999999999999996  69999999999999999998             889999


Q ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          107 CPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       107 C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      |++|       ++.|.....|..|+++|++
T Consensus        78 C~~C-------~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           78 CGVC-------NRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSSS-------CCBCSSHHHHHHHHHHHCC
T ss_pred             CCCC-------cCccCCHHHHHHHHHHhCC
Confidence            9999       9999999999999999974

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=7.1e-17  Score=127.85  Aligned_cols=84  Identities=23%  Similarity=0.341  Sum_probs=78.8

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcccCCcceeec-CCCccCCchH
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDS  180 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k~~~C~-C~~~F~~~~~  180 (432)
                      +++|.|++|       ++.|.....|..|+++|++++||+|++|++.|.....|..|++++..++|.|+ |++.|.....
T Consensus         1 ek~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRIC-------MRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCC-------CCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            478999999       99999999999999999999999999999999999999999999446999999 9999999999


Q ss_pred             HHHHHHHhcccc
Q 014041          181 FITHRAFCDALA  192 (432)
Q Consensus       181 L~~H~~~h~~~~  192 (432)
                      |..|++.++...
T Consensus        74 L~~H~~~~h~~~   85 (88)
T 1llm_C           74 LENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh
Confidence            999999887643

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.59  E-value=1.2e-15  Score=120.42  Aligned_cols=81  Identities=26%  Similarity=0.548  Sum_probs=76.7

Q ss_pred             CCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc--ccccccCChHHhhhhhcc-cCCcceeec-CCCc
Q 014041          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE--KCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTL  174 (432)
Q Consensus       101 ~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~--~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~  174 (432)
                      +.++|.|++  |       ++.|.....|..|++.|+++++|.|.  .|++.|.....|..|+++ +++++|.|+ |++.
T Consensus         2 ~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGC-------GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTT-------CCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCC-------CCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            457899999  7       99999999999999999999999997  599999999999999999 899999999 9999


Q ss_pred             cCCchHHHHHHHHh
Q 014041          175 FSRKDSFITHRAFC  188 (432)
Q Consensus       175 F~~~~~L~~H~~~h  188 (432)
                      |.....|..|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999987

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.57  E-value=2.1e-15  Score=116.23  Aligned_cols=69  Identities=26%  Similarity=0.425  Sum_probs=60.3

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      +...+.++++|+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|+++
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~   68 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDEC-------GKAFIQRSHLIGHHRV   68 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSS-------CCEESSHHHHHHHGGG
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCC-------CCccCCHHHHHHHHHH
Confidence            3445677888999999999999999999999988             7888999998       9999999999999999


Q ss_pred             hcCCCcccc
Q 014041          134 KHGEKKWKC  142 (432)
Q Consensus       134 H~gekp~~C  142 (432)
                      |++++||+|
T Consensus        69 H~~~~p~~C   77 (77)
T 2cot_A           69 HTGSGPSSG   77 (77)
T ss_dssp             SCCCCCCCC
T ss_pred             hCCCCCCCC
Confidence            999999987

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.57  E-value=1.8e-16  Score=134.47  Aligned_cols=66  Identities=15%  Similarity=0.311  Sum_probs=39.5

Q ss_pred             CHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcccCCcceeec-CCCccCCchHHHHHHHHhcc
Q 014041          123 DLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       123 ~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~~~k~~~C~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      ....|..|+ .|++++||+|++|++.|.....|..|+++| ++||.|+ |++.|.+...|.+|++.|++
T Consensus        59 ~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~  125 (129)
T 2wbt_A           59 ESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHN  125 (129)
T ss_dssp             THHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTC
T ss_pred             CHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCC
Confidence            444455554 455566666666666666666666666555 5666666 66666666666666666654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.56  E-value=3e-15  Score=116.77  Aligned_cols=76  Identities=25%  Similarity=0.536  Sum_probs=70.2

Q ss_pred             ceec--ccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041           63 RFLC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus        63 ~f~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ||+|  ++|++.|.....|..|+++|.             ++++|.|++  |       ++.|.....|..|+++|++  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C-------~~~f~~~~~l~~H~~~h~~--   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT-------------QQLPYECPHEGC-------DKRFSLPSRLKRHEKVHAG--   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH-------------TTCCEECCSTTC-------CCEESSHHHHHHHHHHHHS--
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC-------------CCCCeeCCCCCC-------cCccCCHHHHHHHHHHhCC--
Confidence            6899  889999999999999999998             889999988  8       9999999999999999998  


Q ss_pred             cccccc---cccccCChHHhhhhhcc
Q 014041          139 KWKCEK---CSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~---C~k~F~~~~~L~~H~~~  161 (432)
                       |.|.+   |++.|.....|..|+++
T Consensus        59 -~~C~~~~~C~~~f~~~~~l~~H~~~   83 (85)
T 2j7j_A           59 -YPCKKDDSCSFVGKTWTLYLKHVAE   83 (85)
T ss_dssp             -EECCSCSSCCCEESSHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCccCCHHHHHHHHHh
Confidence             99999   99999999999999876

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.55  E-value=3.1e-15  Score=110.27  Aligned_cols=56  Identities=21%  Similarity=0.458  Sum_probs=50.9

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (432)
                      +|||.|++|       ++.|.....|..|+++|+|+|||+|++|++.|.....|..|+++ +|+
T Consensus         2 EKpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFC-------GKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTT-------CCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCC-------CCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            689999999       99999999999999999999999999999999999999999998 444

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.6e-15  Score=121.60  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             CCCChhhhhcCccccCCCCceeccccccccc-ChHHHHHHHHhcCCCcccccccccccC-CcceeCCCCCCCCCCCCCcc
Q 014041           44 PDPDAEVIALSPKSLMATNRFLCEICNKGFQ-RDQNLQLHRRGHNLPWKLKQRTNKEVR-KKVYICPEKSCVHHDPSRAL  121 (432)
Q Consensus        44 ~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~-~~~~L~~H~r~H~~~~~~~~~~~~~~~-~k~y~C~~C~c~~~~c~k~f  121 (432)
                      .+.....+..|+++|.++++|+|++|++.|. ....|..|+++|+             + +++|.|++|       ++.|
T Consensus         5 s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~-------------~~~~~~~C~~C-------~k~F   64 (98)
T 2gqj_A            5 SSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQ-------------KLQDALKCQHC-------RKQF   64 (98)
T ss_dssp             CCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHH-------------HHHHHHSCSSS-------CCCC
T ss_pred             CCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHc-------------CCCCCEECCCC-------CCcc
Confidence            4555667788899999999999999999999 9999999999998             6 889999999       9999


Q ss_pred             CCHHHHHHHHhhhcCCCcccccc
Q 014041          122 GDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       122 ~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ..+..|..|+++|++++|+....
T Consensus        65 ~~~~~L~~H~~~h~~~kp~~~~~   87 (98)
T 2gqj_A           65 KSKAGLNYHTMAEHSAKPSDAEA   87 (98)
T ss_dssp             SCHHHHHHHHHHHSCSCSSCCCC
T ss_pred             CCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999999998866543

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=3.1e-15  Score=117.12  Aligned_cols=78  Identities=21%  Similarity=0.399  Sum_probs=70.7

Q ss_pred             HHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC----CcccccccccccCChH
Q 014041           78 NLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE----KKWKCEKCSKKYAVQS  153 (432)
Q Consensus        78 ~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge----kp~~C~~C~k~F~~~~  153 (432)
                      .|..|+++|.             ++++|.|.+|       ++.|.....|..|++.|+++    ++|+|.+|++.|....
T Consensus         2 s~~~H~~~H~-------------~~k~~~C~~C-------~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~   61 (86)
T 1x6h_A            2 SSGSSGRTHT-------------GEKPYACSHC-------DKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN   61 (86)
T ss_dssp             TTTCCSTTCC-------------CCCCEECSSS-------SCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred             Ccccccceec-------------CCCCCcCCCC-------CCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence            3567888887             8999999999       99999999999999987775    7899999999999999


Q ss_pred             Hhhhhhcc-cCCcceeec-CCCcc
Q 014041          154 DWKAHSKI-CGTREYRCD-CGTLF  175 (432)
Q Consensus       154 ~L~~H~~~-~~~k~~~C~-C~~~F  175 (432)
                      .|..|+++ ++++++.|+ |+..|
T Consensus        62 ~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           62 TMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHHHccCCCCcccCCCCCCC
Confidence            99999999 899999999 98875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=6.3e-15  Score=120.56  Aligned_cols=73  Identities=16%  Similarity=0.286  Sum_probs=58.7

Q ss_pred             cCCCCceecccccccccChHHHHHHHH-hcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHH-Hhhhc
Q 014041           58 LMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKH-FSRKH  135 (432)
Q Consensus        58 h~~~k~f~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H-~~~H~  135 (432)
                      -+++++|+|++||+.|..+..|..|++ .|.+.          .++++|.|++|       ++.|.....|..| +++|+
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~----------~~ekpf~C~~C-------gk~F~~~~~L~~H~~r~Ht   75 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNV----------VLNSSYVCVEC-------NFLTKRYDALSEHNLKYHP   75 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSC----------CCSCCEEETTT-------TEEESSTHHHHTHHHHTST
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCC----------CCCCCcCCCCC-------CcccCCHHHHHHHHHHhcC
Confidence            367888999999999999999999987 47310          15788999888       8899999999999 78888


Q ss_pred             CCCccccccccc
Q 014041          136 GEKKWKCEKCSK  147 (432)
Q Consensus       136 gekp~~C~~C~k  147 (432)
                      |++||+|.++.+
T Consensus        76 gekpy~C~~~~~   87 (102)
T 2ghf_A           76 GEENFKLTMVKR   87 (102)
T ss_dssp             TCCCEEEEECCC
T ss_pred             CCCCeeCCcccC
Confidence            999999887543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.51  E-value=1.8e-14  Score=110.06  Aligned_cols=66  Identities=23%  Similarity=0.433  Sum_probs=57.2

Q ss_pred             ccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus        55 ~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      ...+.++++|+|++|++.|.....|..|+++|+             ++++|.|.+|       ++.|.....|..|+++|
T Consensus         9 ~~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~C-------~k~f~~~~~L~~H~~~H   68 (74)
T 2lce_A            9 SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHT-------------GEKPYRCNIC-------GAQFNRPANLKTHTRIH   68 (74)
T ss_dssp             --CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHC-------------CCCSEECTTT-------CCEESCHHHHHHHHHHH
T ss_pred             ccccCCCCCeECCCCCceeCCHHHHHHHHHHcC-------------CCCCEECCCC-------CchhCCHHHHHHHHHhc
Confidence            345677888999999999999999999999998             7889999998       99999999999999999


Q ss_pred             cCCCcc
Q 014041          135 HGEKKW  140 (432)
Q Consensus       135 ~gekp~  140 (432)
                      ++++||
T Consensus        69 ~~~kp~   74 (74)
T 2lce_A           69 SGEKPY   74 (74)
T ss_dssp             CCSCCC
T ss_pred             CCCCCC
Confidence            999886

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.9e-14  Score=110.97  Aligned_cols=70  Identities=21%  Similarity=0.442  Sum_probs=66.0

Q ss_pred             cCCcceeCCC--CCCCCCCCCCccCCHHHHHHHHh-hhcCCCcccccc--cccccCChHHhhhhhcc-cCCcceeec-CC
Q 014041          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK--CSKKYAVQSDWKAHSKI-CGTREYRCD-CG  172 (432)
Q Consensus       100 ~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~-~H~gekp~~C~~--C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~  172 (432)
                      .++++|.|..  |       ++.|.....|..|++ .|.++++|+|.+  |++.|.....|..|+++ +++++|.|+ |+
T Consensus         3 ~~~~~~~C~~~~C-------~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~   75 (79)
T 2dlk_A            3 SGSSGMPCDFPGC-------GRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG   75 (79)
T ss_dssp             SCCSSEECSSTTT-------CCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSS
T ss_pred             CCCCCccCCCCCC-------cCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCC
Confidence            3678999997  7       999999999999999 799999999999  99999999999999999 899999999 99


Q ss_pred             CccC
Q 014041          173 TLFS  176 (432)
Q Consensus       173 ~~F~  176 (432)
                      +.|.
T Consensus        76 k~F~   79 (79)
T 2dlk_A           76 PSSG   79 (79)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9984

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.49  E-value=3e-15  Score=126.88  Aligned_cols=113  Identities=15%  Similarity=0.156  Sum_probs=88.5

Q ss_pred             CCCCCCCCcCCCCCCCC--CCChhhhhcCccccCCCCceeccccccccc------ChHHHHHHHHhcCCCcccccccccc
Q 014041           28 NPSSNQLKRKRNLPGTP--DPDAEVIALSPKSLMATNRFLCEICNKGFQ------RDQNLQLHRRGHNLPWKLKQRTNKE   99 (432)
Q Consensus        28 ~~~~~~~k~~c~~cg~~--~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~------~~~~L~~H~r~H~~~~~~~~~~~~~   99 (432)
                      ..+.+.++|.|..++-.  |...+.+..+.. ...+++|.|++|++.|.      ....|..|+ .|+            
T Consensus         5 ~~~~~~k~~~~~~k~~~~~~s~ee~~~~~~l-~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~------------   70 (129)
T 2wbt_A            5 DVDSGSKKYLSNHKGIFIHVTLEELKRYHQL-TPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK------------   70 (129)
T ss_dssp             CCCTTCCGGGGCSSCEEEECCHHHHHHHTTS-CHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH------------
T ss_pred             hhcccccccccccCCeeeeecHHhhhccccC-ChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhC------------
Confidence            34567788988775532  333333233332 23457799999998887      556666676 577            


Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCC
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGT  164 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~  164 (432)
                       ++++|.|++|       ++.|.....|..|+++|  ++||+|++|++.|.....|.+|+++ ++.
T Consensus        71 -~~~~~~C~~C-------~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           71 -AISQFVCPLC-------LMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             -HHCSEECTTT-------CCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             -CCCCeECCCC-------CcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence             8899999999       99999999999999999  9999999999999999999999999 664

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.49  E-value=3.9e-14  Score=107.65  Aligned_cols=66  Identities=26%  Similarity=0.377  Sum_probs=60.2

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHh
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS  132 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~  132 (432)
                      .+.++|+++++|+|++|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|++
T Consensus         4 ~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A            4 GSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHT-------------GEKPYKCLEC-------GKAFSQNSGLINHQR   63 (72)
T ss_dssp             CCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGG-------------CSCCEECSSS-------CCEESSHHHHHHHHH
T ss_pred             CCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcC-------------CCCCeECCCC-------CcccCCHHHHHHHHH
Confidence            35678999999999999999999999999999998             8899999999       999999999999999


Q ss_pred             hhcCCC
Q 014041          133 RKHGEK  138 (432)
Q Consensus       133 ~H~gek  138 (432)
                      +|+++.
T Consensus        64 ~H~~~~   69 (72)
T 1x6e_A           64 IHTSGP   69 (72)
T ss_dssp             HHHSSS
T ss_pred             hcCCCC
Confidence            998864

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.48  E-value=3.9e-14  Score=106.90  Aligned_cols=65  Identities=20%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      +|.++++|+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|+++|++
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C-------~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHC-------------TDRPFKCNYC-------SFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSCSEECSSS-------SCEESSHHHHHHHHHHHHS
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCEeCCCC-------CCccCCHHHHHHHHHHHhC
Confidence            5778899999999999999999999999998             8889999998       9999999999999999999


Q ss_pred             CCccc
Q 014041          137 EKKWK  141 (432)
Q Consensus       137 ekp~~  141 (432)
                      ++|..
T Consensus        63 ~~p~p   67 (70)
T 1x5w_A           63 DMSGP   67 (70)
T ss_dssp             SSCCS
T ss_pred             CCCCC
Confidence            88753

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.48  E-value=1.3e-14  Score=113.16  Aligned_cols=78  Identities=21%  Similarity=0.203  Sum_probs=74.3

Q ss_pred             CcCC--CCCCCCCCChhhhhcCccccCCCCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC-
Q 014041           35 KRKR--NLPGTPDPDAEVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE-  109 (432)
Q Consensus        35 k~~c--~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~-  109 (432)
                      +|+|  +.||+.|.....|..|+++|.++++|+|++  |++.|.....|..|+++|+             +   |.|+. 
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~---~~C~~~   64 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA-------------G---YPCKKD   64 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH-------------S---EECCSC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC-------------C---CCCCCC
Confidence            4889  999999999999999999999999999998  9999999999999999998             5   99999 


Q ss_pred             --CCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          110 --KSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       110 --C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                        |       ++.|.....|..|+++|+
T Consensus        65 ~~C-------~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           65 DSC-------SFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SSC-------CCEESSHHHHHHHHHHCC
T ss_pred             CCC-------CCccCCHHHHHHHHHhcC
Confidence              7       999999999999999885

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=4.6e-14  Score=108.60  Aligned_cols=67  Identities=15%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             CCCCCCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           28 NPSSNQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        28 ~~~~~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      ....++++|+|++|++.|.....|..|+++|.++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~-------------~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT-------------GSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSC-------------CCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCC
Confidence            345567899999999999999999999999999999999999999999999999999998             8899988

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-14  Score=117.44  Aligned_cols=59  Identities=20%  Similarity=0.467  Sum_probs=31.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccC-CHHHHHHHHhhhcC-CCcccccccccccCChHHhhhhhcc-cCCcc
Q 014041          101 RKKVYICPEKSCVHHDPSRALG-DLTGIKKHFSRKHG-EKKWKCEKCSKKYAVQSDWKAHSKI-CGTRE  166 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~-~~~~L~~H~~~H~g-ekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~  166 (432)
                      ++++|.|++|       ++.|. ....|..|+++|++ +++|+|.+|++.|..+..|.+|+++ ++++|
T Consensus        21 ~~~~~~C~~C-------~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp   82 (98)
T 2gqj_A           21 ERGEAVCPTC-------NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP   82 (98)
T ss_dssp             TTSCCCCTTT-------CCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCS
T ss_pred             cCCCcCCCCC-------CCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4455555555       55555 55555555555555 5555555555555555555555554 44444

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.45  E-value=7.2e-14  Score=112.96  Aligned_cols=76  Identities=16%  Similarity=0.202  Sum_probs=66.3

Q ss_pred             ccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCcc-CCHHHHHHHHhhhcCCCccccccccccc
Q 014041           71 KGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL-GDLTGIKKHFSRKHGEKKWKCEKCSKKY  149 (432)
Q Consensus        71 k~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f-~~~~~L~~H~~~H~gekp~~C~~C~k~F  149 (432)
                      ..|.....|..|++.|.             ++++|.|++|       ++.| .....|+.|+++| +++||+|.+|+|.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C-------~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTC-------QAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTT-------CSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCC-------CCCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            46677788999999888             8889999999       9999 8999999999999 99999999999999


Q ss_pred             CChHHhhhh-hcccCCcce
Q 014041          150 AVQSDWKAH-SKICGTREY  167 (432)
Q Consensus       150 ~~~~~L~~H-~~~~~~k~~  167 (432)
                      ..+..|+.| +++|.++||
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            999999999 766666665

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.2e-13  Score=106.14  Aligned_cols=70  Identities=16%  Similarity=0.393  Sum_probs=60.9

Q ss_pred             hhhcCccccCCCCceecccccccccChHHHHHHHH-hcCCCcccccccccccC-CcceeCCCCCCCCCCCCCccCCHHHH
Q 014041           50 VIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVR-KKVYICPEKSCVHHDPSRALGDLTGI  127 (432)
Q Consensus        50 ~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~-~k~y~C~~C~c~~~~c~k~f~~~~~L  127 (432)
                      ++..|+++|+++++|+|++|++.|.....|..|++ .|.             + +++|.|++|       ++.|.....|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~-------------~~~~~~~C~~C-------~~~f~~~~~L   61 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHT-------------ENVAKFHCPHC-------DTVIARKSDL   61 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS-------------SSCSSEECSSS-------SCEESSHHHH
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcC-------------CCCCccCCCCC-------CCccCCHHHH
Confidence            35679999999999999999999999999999987 565             4 489999999       9999999999


Q ss_pred             HHHHhhhcC-CCc
Q 014041          128 KKHFSRKHG-EKK  139 (432)
Q Consensus       128 ~~H~~~H~g-ekp  139 (432)
                      ..|++.|++ ++|
T Consensus        62 ~~H~~~~H~~~~p   74 (77)
T 2ct1_A           62 GVHLRKQHSYSGP   74 (77)
T ss_dssp             HHHHHHTSCCSCC
T ss_pred             HHHHHHhCCCCCC
Confidence            999998665 444

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.41  E-value=2.5e-13  Score=107.20  Aligned_cols=64  Identities=17%  Similarity=0.322  Sum_probs=50.6

Q ss_pred             ccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-h
Q 014041           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-R  133 (432)
Q Consensus        55 ~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~  133 (432)
                      +..+...++|+|++|||.|.++..|.+|+++|+             ++++|.|++|       ++.|.++..|.+|++ .
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~-------------~~k~~~C~~C-------~k~F~~~~~L~~H~~~~   79 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLH-------------AAQVFPCKYC-------PATFYSSPGLTRHINKC   79 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTS-------------CSSSEECTTS-------SCEESSHHHHHHHHHTT
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhcc-------------CCCccCCCCC-------CCEeCCHHHHHHhCccc
Confidence            345566778888888888888888888888887             7788888888       888888888888874 4


Q ss_pred             hcCCC
Q 014041          134 KHGEK  138 (432)
Q Consensus       134 H~gek  138 (432)
                      |.+|.
T Consensus        80 H~~E~   84 (85)
T 2lv2_A           80 HPSEN   84 (85)
T ss_dssp             CTTCC
T ss_pred             CcCCC
Confidence            76654

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=1.4e-13  Score=111.28  Aligned_cols=79  Identities=13%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             CCCCChhhhhcCccccCCCCceecccccccc-cChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCcc
Q 014041           43 TPDPDAEVIALSPKSLMATNRFLCEICNKGF-QRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRAL  121 (432)
Q Consensus        43 ~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F-~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f  121 (432)
                      ..|.....+..|.+.|.++++|+|++|++.| .....|+.|+++|              ++++|.|.+|       ++.|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h--------------~~k~~~C~~C-------gk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC--------------KQEMFTCHHC-------GKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH--------------CCCCCCCSSS-------CCCC
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH--------------CCCCeECCCC-------CCee
Confidence            4567788899999999999999999999999 9999999999998              3589999999       9999


Q ss_pred             CCHHHHHHH-HhhhcCCCcccc
Q 014041          122 GDLTGIKKH-FSRKHGEKKWKC  142 (432)
Q Consensus       122 ~~~~~L~~H-~~~H~gekp~~C  142 (432)
                      ..+..|..| +++|+++..|.+
T Consensus        73 ~~~~~L~~H~~~~H~~~p~~~~   94 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPSGPS   94 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSSCSC
T ss_pred             CCHHHHHHHhHHhcCCCCCCCC
Confidence            999999999 888987655544

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=2.3e-13  Score=111.21  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-hh---cCCCcccccccccccCChHHhhhh-hcc-cCCcceeec-CC
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RK---HGEKKWKCEKCSKKYAVQSDWKAH-SKI-CGTREYRCD-CG  172 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H---~gekp~~C~~C~k~F~~~~~L~~H-~~~-~~~k~~~C~-C~  172 (432)
                      .++++|.|++|       ++.|..+..|..|++ .|   .+++||+|++|++.|..+..|..| +++ ++++||.|+ +.
T Consensus        14 ~gekpy~C~~C-------gk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           14 KVEGGYECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCSSEECSSC-------SCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             CCCcCcCCCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            48899999999       999999999999998 48   578999999999999999999999 788 899999997 54

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=4.8e-14  Score=108.48  Aligned_cols=66  Identities=20%  Similarity=0.385  Sum_probs=53.2

Q ss_pred             HHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cC--Ccceeec-CCCccCCchHHHHHHHHhcccc
Q 014041          127 IKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG--TREYRCD-CGTLFSRKDSFITHRAFCDALA  192 (432)
Q Consensus       127 L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~--~k~~~C~-C~~~F~~~~~L~~H~~~h~~~~  192 (432)
                      |.+|+++|++++||+|++|++.|.....|..|++. |.  +++|.|+ |++.|.+...|..|++.++...
T Consensus         3 ~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            3 SGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            44678888888888888888888888888888874 43  3788888 8888888888888888877643

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.38  E-value=3.4e-13  Score=102.87  Aligned_cols=61  Identities=23%  Similarity=0.534  Sum_probs=55.8

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcce
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  167 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~  167 (432)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++ ++++||
T Consensus        13 ~~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRC-------QASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTS-------SCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCC-------CceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            47889999999       99999999999999999999999999999999999999999999 788876

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.37  E-value=4.5e-13  Score=99.61  Aligned_cols=62  Identities=19%  Similarity=0.354  Sum_probs=51.0

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHh-cCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      ++|+++++|+|++|++.|.....|..|++. |.            .++++|.|++|       ++.|.....|..|++.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~------------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~   63 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHK------------RNVKVYPCPFC-------FKEFTRKDNMTAHVKII   63 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSS------------SSCCCEECTTT-------CCEESCHHHHHHHHHHH
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcC------------CCCcCeECCCC-------CCccCCHHHHHHHHHHH
Confidence            567788888888888888888888888887 52            16788888888       88888888888888888


Q ss_pred             cC
Q 014041          135 HG  136 (432)
Q Consensus       135 ~g  136 (432)
                      ++
T Consensus        64 H~   65 (66)
T 2drp_A           64 HK   65 (66)
T ss_dssp             TC
T ss_pred             cC
Confidence            75

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=7e-13  Score=102.05  Aligned_cols=69  Identities=17%  Similarity=0.235  Sum_probs=55.7

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-hhc
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKH  135 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H~  135 (432)
                      +|+++++|+|++|++.|.....|..|+++|++.          .++++|.|++|       ++.|.....|..|++ .|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~----------~~~~~~~C~~C-------~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAET----------VAALRFPCEFC-------GKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHH----------TTTCCEECTTT-------CCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhcc----------CCCcccCCCCC-------CchhCCHHHHHHHHHHhCC
Confidence            478889999999999999999999999998710          02788999998       999999999999985 466


Q ss_pred             CCCcccc
Q 014041          136 GEKKWKC  142 (432)
Q Consensus       136 gekp~~C  142 (432)
                      ++++...
T Consensus        64 ~~~~~~~   70 (78)
T 2d9h_A           64 ALLLAPQ   70 (78)
T ss_dssp             TTSSCCS
T ss_pred             CCCCCcc
Confidence            6666554

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.36  E-value=4.9e-13  Score=96.29  Aligned_cols=55  Identities=29%  Similarity=0.499  Sum_probs=37.8

Q ss_pred             CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      +++|+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLRTHT-------------GEKPYKCEFC-------EYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHHHHH-------------CCCCEECSSS-------SCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHHHcC-------------CCCCcCCCCC-------cchhCCHHHHHHHHHHhc
Confidence            466777777777777777777777776             6667777776       777777777777777765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=7e-13  Score=99.92  Aligned_cols=61  Identities=20%  Similarity=0.237  Sum_probs=47.0

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcce
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  167 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~  167 (432)
                      .++++|.|++|       ++.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ ++++|.
T Consensus         5 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            5 SSGHPEKCSEC-------SYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCSEECSSS-------SCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            36777888877       78888888888888888788888888888888888888877777 666653

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=3.2e-13  Score=100.42  Aligned_cols=58  Identities=29%  Similarity=0.610  Sum_probs=31.7

Q ss_pred             hhcCCCcccccccccccCChHHhhhhhcc-c--CCcceeec-CCCccCCchHHHHHHHHhcc
Q 014041          133 RKHGEKKWKCEKCSKKYAVQSDWKAHSKI-C--GTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       133 ~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~--~~k~~~C~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      +|++++||+|++|++.|.....|..|+++ |  ++++|.|+ |++.|.+...|..|++.|++
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45555555555555555555555555554 3  44555555 55555555555555555543

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.34  E-value=1.1e-12  Score=94.36  Aligned_cols=56  Identities=23%  Similarity=0.455  Sum_probs=47.5

Q ss_pred             ceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ||+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHT-------------DVRPYHCTYC-------NFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS-------------SCCCEECSSS-------SCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcC-------------CCCCccCCCC-------CchhcCHHHHHHHHHHhcccC
Confidence            5888888888888888888888887             7788888888       888888888888888888775

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=103.28  Aligned_cols=60  Identities=12%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             ccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041           95 RTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus        95 ~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ........++|.|++|       ++.|.++..|.+|+++|++++||+|++|++.|.+...|.+|++.
T Consensus        19 ~~~~~~~~~~h~C~~C-------gk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           19 VLGLSASAECHLCPVC-------GESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             CCSSCCCCTTEECTTS-------CCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCCCCCCEECCCC-------CCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            3344457788999999       99999999999999999999999999999999999999999865

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.32  E-value=7e-13  Score=100.58  Aligned_cols=54  Identities=30%  Similarity=0.521  Sum_probs=34.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.+|++.|.....|.+|+++
T Consensus        11 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~   64 (72)
T 1x6e_A           11 GEKPYGCVEC-------GKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI   64 (72)
T ss_dssp             TCCCEECSSS-------CCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCC-------CCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHh
Confidence            5566666666       66666666666666666666666666666666666666666655

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-14  Score=110.31  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=40.6

Q ss_pred             hhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHH
Q 014041           49 EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK  128 (432)
Q Consensus        49 ~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~  128 (432)
                      ..|..|+++|.++++|.|++||+.|.....|..                    +++|.|++|       ++.|.....|.
T Consensus         4 ~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------------------~~~~~C~~C-------~~~f~~~~~l~   56 (73)
T 2ctu_A            4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------------------RKTPMCEKC-------RKDSCQEAALN   56 (73)
T ss_dssp             CSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------------------SSSCCCHHH-------HHTCSCCCSSC
T ss_pred             hhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------------------CCCCCCCCC-------ChhhcCHHHHH
Confidence            345566666666666666666666665555433                    244555555       55555555555


Q ss_pred             HHHhhhcCCCccccccc
Q 014041          129 KHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       129 ~H~~~H~gekp~~C~~C  145 (432)
                      .|+++|++++||+|++|
T Consensus        57 ~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           57 KDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCSSCCCCCCCSSCCCC
T ss_pred             HHHHhhcCCCCCCCCCC
Confidence            55555555555555554

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=5.8e-12  Score=100.39  Aligned_cols=61  Identities=18%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             ceecccccccccChHHHHHHHHh-cCCCcccccccccccCCcc--------eeCCCCCCCCCCCCCccCCHHHHHHHHhh
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTNKEVRKKV--------YICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~--------y~C~~C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      .|.|++|++.|.....|..|+++ |.             ++++        |.|++|       ++.|.....|..|+++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~~~~~~~~c~~~~C~~C-------~k~f~~~~~L~~H~~~   84 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHV-------------GGPEQNNHVCYWEECPRE-------GKSFKAKYKLVNHIRV   84 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTT-------------CCTTCSCCCCCCTTCSST-------TCCCSSHHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhcc-------------CCCCCCccceeccCCCCC-------CcccCCHHHHHHHHHh
Confidence            47899999999999999999998 76             5555        888888       9999999999999999


Q ss_pred             hcCCCccccc
Q 014041          134 KHGEKKWKCE  143 (432)
Q Consensus       134 H~gekp~~C~  143 (432)
                      |++++||+|+
T Consensus        85 H~~~k~~~C~   94 (95)
T 2ej4_A           85 HTGEKSGPSS   94 (95)
T ss_dssp             HHTCCCCSSC
T ss_pred             cCCCCCCCCC
Confidence            9999999986

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.6e-12  Score=100.08  Aligned_cols=57  Identities=23%  Similarity=0.529  Sum_probs=39.5

Q ss_pred             hcCCCcccccccccccCChHHhhhhhcc-cC---Ccceeec-CCCccCCchHHHHHHHHhcc
Q 014041          134 KHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG---TREYRCD-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       134 H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~---~k~~~C~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      |++++||+|++|++.|.....|..|+++ ++   +++|.|+ |++.|.+...|.+|++.+|.
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            5667777777777777777777777776 43   6777777 77777777777777755544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.28  E-value=2e-12  Score=93.04  Aligned_cols=53  Identities=21%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +++|.|++|       ++.|.....|..|+++|++++||+|++|++.|.....|..|+++
T Consensus         2 ~~~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            2 SSSRECSYC-------GKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ---CBCTTT-------CCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCccCCCC-------cchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            467777777       77777777777777777777777777777777777777777766

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.26  E-value=5.3e-12  Score=91.86  Aligned_cols=56  Identities=30%  Similarity=0.618  Sum_probs=40.9

Q ss_pred             CceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHH-hhhcCC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF-SRKHGE  137 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~-~~H~ge  137 (432)
                      ++|+|++|++.|.....|..|+++|+             ++++|.|++|       ++.|.....|..|+ +.|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT-------------NEKPYPCGLC-------NRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT-------------SSCSEECTTT-------CCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhC-------------CCCCccCCCC-------CCccCCHHHHHHHHHHHcCCc
Confidence            46777777777777777777777776             6677777777       77777777777776 456554

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=6.9e-14  Score=105.74  Aligned_cols=69  Identities=13%  Similarity=0.161  Sum_probs=62.7

Q ss_pred             hHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHh
Q 014041           76 DQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDW  155 (432)
Q Consensus        76 ~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L  155 (432)
                      ...|..|+++|.             ++++|.|++|       ++.|.....|..       +++|+|++|++.|.....|
T Consensus         3 ~~~l~~H~~~h~-------------~~~~~~C~~C-------~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l   55 (73)
T 2ctu_A            3 SGSSGKRQKIHL-------------GDRSQKCSKC-------GIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAAL   55 (73)
T ss_dssp             CCSCCCCCCCCC-------------CCSEEECSSS-------CCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSS
T ss_pred             chhHHHHHHHhC-------------CCCCeeCCcc-------cchhCCHHHhCc-------CCCCCCCCCChhhcCHHHH
Confidence            456778888887             8999999999       999999888876       8999999999999999999


Q ss_pred             hhhhcc-cCCcceeec-C
Q 014041          156 KAHSKI-CGTREYRCD-C  171 (432)
Q Consensus       156 ~~H~~~-~~~k~~~C~-C  171 (432)
                      ..|+++ +++++|.|+ |
T Consensus        56 ~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           56 NKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHhhcCCCCCCCCCC
Confidence            999999 899999998 7

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.22  E-value=8.5e-12  Score=89.67  Aligned_cols=55  Identities=20%  Similarity=0.430  Sum_probs=47.7

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCc
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (432)
                      ||.|++|       ++.|.....|..|+++|+++++|+|++|++.|.....|..|+++ ++++
T Consensus         1 p~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEEC-------GIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTT-------CCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCC-------cCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            5888888       89999999999999999999999999999999999999999888 5554

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.21  E-value=1.2e-11  Score=93.66  Aligned_cols=60  Identities=20%  Similarity=0.397  Sum_probs=46.9

Q ss_pred             cccCCCCceecc--cccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh
Q 014041           56 KSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus        56 ~~h~~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      ..|.++++|+|+  .|++.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~-------------~~~~~~C~~C-------~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHT-------------GQKPFQCRIC-------MRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHH-------------CCCCEECTTT-------CCEESCHHHHHHHHTT
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhC-------------CCCCeECCCC-------CchhCCHHHHHHHHHh
Confidence            346677788886  48888888888888888887             7778888887       8888888888888877


Q ss_pred             hc
Q 014041          134 KH  135 (432)
Q Consensus       134 H~  135 (432)
                      |+
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=9.7e-12  Score=99.06  Aligned_cols=65  Identities=17%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             CCCCcCCCCCCCCCCChhhhhcCccc-cCCCCc--------eecccccccccChHHHHHHHHhcCCCcccccccccccCC
Q 014041           32 NQLKRKRNLPGTPDPDAEVIALSPKS-LMATNR--------FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRK  102 (432)
Q Consensus        32 ~~~k~~c~~cg~~~~~~~~l~~h~~~-h~~~k~--------f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~  102 (432)
                      ...+|.|+.|++.|.....|..|+++ |.++++        |+|++|++.|.....|..|+++|+             ++
T Consensus        22 ~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~   88 (95)
T 2ej4_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------GE   88 (95)
T ss_dssp             SCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH-------------TC
T ss_pred             CcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC-------------CC
Confidence            34578999999999999999999998 999888        999999999999999999999998             89


Q ss_pred             cceeCCC
Q 014041          103 KVYICPE  109 (432)
Q Consensus       103 k~y~C~~  109 (432)
                      ++|.|+.
T Consensus        89 k~~~C~~   95 (95)
T 2ej4_A           89 KSGPSSG   95 (95)
T ss_dssp             CCCSSCC
T ss_pred             CCCCCCC
Confidence            9999963

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.18  E-value=2e-11  Score=88.71  Aligned_cols=52  Identities=19%  Similarity=0.525  Sum_probs=44.2

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ++|.|++|       ++.|.....|..|+++|++++||+|++|++.|.....|..|++.
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   52 (60)
T 2adr_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK   52 (60)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcCcCCCC-------ccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHH
Confidence            47888888       88888888888888888888888888888888888888888743

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=1.6e-11  Score=84.32  Aligned_cols=45  Identities=29%  Similarity=0.402  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS-------------GKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhc-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=84.06  Aligned_cols=45  Identities=24%  Similarity=0.374  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTS-------------SCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.9e-11  Score=83.92  Aligned_cols=45  Identities=27%  Similarity=0.279  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCC-------------SSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.7e-11  Score=84.19  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTS-------------CCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.16  E-value=1.7e-11  Score=84.13  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSS-------------SCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.8e-11  Score=84.04  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHT-------------GVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGS-------------CCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.16  E-value=1.8e-11  Score=84.23  Aligned_cols=45  Identities=24%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHS-------------SCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.7e-11  Score=84.27  Aligned_cols=45  Identities=27%  Similarity=0.363  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTS-------------CSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=1.7e-11  Score=84.28  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTC-------------CCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=1.9e-11  Score=83.11  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=42.0

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      |+++|+++++|+|++||+.|.....|..|+++|+             ++++|.|++|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA-------------EEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHT-------------SSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            6789999999999999999999999999999998             8899999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2e-11  Score=83.83  Aligned_cols=45  Identities=24%  Similarity=0.331  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHT-------------KQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTS-------------CCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=83.66  Aligned_cols=45  Identities=20%  Similarity=0.319  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++||+.|.....|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHT-------------GERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHS-------------CCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.15  E-value=2e-11  Score=83.96  Aligned_cols=45  Identities=29%  Similarity=0.376  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHS-------------CCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=83.48  Aligned_cols=45  Identities=24%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++||+.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHV-------------DDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCC-------------SCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.7e-11  Score=84.27  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------CSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.15  E-value=1.8e-11  Score=84.06  Aligned_cols=45  Identities=27%  Similarity=0.354  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGG-------------CCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.8e-11  Score=84.11  Aligned_cols=45  Identities=24%  Similarity=0.279  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTC-------------CCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2e-11  Score=83.83  Aligned_cols=45  Identities=24%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=83.73  Aligned_cols=45  Identities=24%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHS-------------CCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.15  E-value=2.1e-11  Score=83.78  Aligned_cols=45  Identities=24%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGS-------------SSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCcCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=83.81  Aligned_cols=45  Identities=27%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHT-------------AEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTT-------------CCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=83.77  Aligned_cols=45  Identities=29%  Similarity=0.342  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++||+.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHT-------------TSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.3e-11  Score=83.67  Aligned_cols=45  Identities=31%  Similarity=0.424  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM-------------GEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGG-------------SCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.15  E-value=2.2e-11  Score=83.55  Aligned_cols=45  Identities=24%  Similarity=0.271  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGT-------------SCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.8e-11  Score=84.06  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHH-------------CCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.8e-11  Score=84.16  Aligned_cols=45  Identities=27%  Similarity=0.290  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++||+.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF-------------REKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHH-------------STTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-11  Score=83.72  Aligned_cols=45  Identities=29%  Similarity=0.280  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTT-------------TCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=1.8e-11  Score=84.15  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT-------------GGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHH-------------SCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.6e-11  Score=83.25  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.3e-11  Score=83.59  Aligned_cols=45  Identities=27%  Similarity=0.299  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGT-------------TCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=83.40  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHT-------------GYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHT-------------CCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=83.56  Aligned_cols=45  Identities=29%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++||+.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGS-------------CCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.2e-11  Score=83.75  Aligned_cols=45  Identities=27%  Similarity=0.324  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++||+.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTS-------------CSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=83.48  Aligned_cols=45  Identities=22%  Similarity=0.241  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHT-------------GENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTT-------------TSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.3e-11  Score=83.60  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|.+|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8899999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=90.07  Aligned_cols=59  Identities=15%  Similarity=0.225  Sum_probs=41.2

Q ss_pred             CCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC-CCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP-EKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~-~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      .++++|+|++|++.|. ...|..|+++ +             ++++|.|+ .|       ++.|..+..|..|+++|.+.
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C-------~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQC-------GVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCC-------SCCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCccc-------CcccccHHHHHHHHHhhccc
Confidence            4456777777777777 7777777766 5             66777777 77       77777777777777776655


Q ss_pred             Cc
Q 014041          138 KK  139 (432)
Q Consensus       138 kp  139 (432)
                      ++
T Consensus        64 ~~   65 (66)
T 2eod_A           64 AL   65 (66)
T ss_dssp             CC
T ss_pred             Cc
Confidence            44

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=3.1e-11  Score=82.94  Aligned_cols=45  Identities=29%  Similarity=0.359  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSC-------------CSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            47899999999999999999999999999999998             8899999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.4e-11  Score=83.42  Aligned_cols=45  Identities=24%  Similarity=0.260  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM-------------GEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTC-------------CSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=2.5e-11  Score=83.38  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHS-------------SCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.13  E-value=1.8e-11  Score=92.72  Aligned_cols=55  Identities=18%  Similarity=0.540  Sum_probs=45.7

Q ss_pred             cCCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          100 VRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       100 ~~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      .++++|.|+  .|       ++.|.....|..|++.|+++++|+|++|++.|.....|.+|+++
T Consensus        15 ~~~~~~~C~~~~C-------~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           15 PKMRPYACPVESC-------DRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCCCCEECSSTTB-------CCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CCCCccCCcCCCC-------CCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHh
Confidence            477888886  47       88888888888888888888888888888888888888888776

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.3e-11  Score=83.53  Aligned_cols=45  Identities=24%  Similarity=0.309  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTT-------------TCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=3.1e-11  Score=82.92  Aligned_cols=45  Identities=20%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHM-------------GQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHS-------------CCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8999999987

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.7e-11  Score=83.20  Aligned_cols=45  Identities=24%  Similarity=0.281  Sum_probs=42.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTT-------------TSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.5e-11  Score=83.42  Aligned_cols=45  Identities=24%  Similarity=0.396  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT-------------GERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSC-------------SCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2.6e-11  Score=83.43  Aligned_cols=45  Identities=20%  Similarity=0.247  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHT-------------GQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHH-------------SCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8899999987

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=2e-11  Score=83.92  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGS-------------SCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999998             8899999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.12  E-value=3.7e-11  Score=82.62  Aligned_cols=45  Identities=29%  Similarity=0.372  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGC-------------CSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8999999987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=3.3e-11  Score=82.83  Aligned_cols=45  Identities=27%  Similarity=0.416  Sum_probs=42.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT-------------GEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHH-------------CCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHc-------------CCCCCCCCCC
Confidence            47889999999999999999999999999999998             8899999987

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=5.9e-11  Score=81.56  Aligned_cols=45  Identities=27%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             8899999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=6.1e-11  Score=81.65  Aligned_cols=45  Identities=24%  Similarity=0.247  Sum_probs=42.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHH-hcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|+++|+++++|+|++|++.|.....|..|++ +|.             ++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~-------------~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT-------------GEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTT-------------TSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcC-------------CCCCCCCCCC
Confidence            58899999999999999999999999999999 998             8899999987

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.08  E-value=1.2e-10  Score=87.92  Aligned_cols=58  Identities=19%  Similarity=0.411  Sum_probs=40.1

Q ss_pred             ccCCCCceeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC--CCCCCCCCCCccCCHHHHHHHHh
Q 014041           57 SLMATNRFLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFS  132 (432)
Q Consensus        57 ~h~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~  132 (432)
                      .....++|.|++  |++.|.....|..|+++|+             ++++|.|.+  |       ++.|.....|..|++
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~~~C-------~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT-------------GEKPFSCSWKGC-------ERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHS-------------SSCSEECCCTTC-------CCEESSHHHHHHHTT
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcC-------------CCCCccCCCCCC-------CcccCCHHHHHhHhh
Confidence            345566677766  7777777777777777776             667777754  6       777777777777766


Q ss_pred             hh
Q 014041          133 RK  134 (432)
Q Consensus       133 ~H  134 (432)
                      +|
T Consensus        71 ~H   72 (72)
T 2epa_A           71 TH   72 (72)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.06  E-value=9.4e-11  Score=80.44  Aligned_cols=44  Identities=25%  Similarity=0.412  Sum_probs=41.5

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      +.++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            5678999999999999999999999999999998             8899999987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.1e-10  Score=80.25  Aligned_cols=44  Identities=27%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHS-------------SSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            48899999999999999999999999999999998             899999975

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1e-10  Score=80.22  Aligned_cols=44  Identities=23%  Similarity=0.343  Sum_probs=41.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHC-------------CCSCSCTTC
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.05  E-value=1.1e-10  Score=80.03  Aligned_cols=44  Identities=30%  Similarity=0.391  Sum_probs=41.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSC-------------SSSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.05  E-value=1.1e-10  Score=80.13  Aligned_cols=44  Identities=27%  Similarity=0.306  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHT-------------TSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=80.16  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTT-------------TSSCCCCSC
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.1e-10  Score=80.08  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------CCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.3e-10  Score=79.74  Aligned_cols=44  Identities=23%  Similarity=0.386  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHC-------------CCCCCCSCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.2e-10  Score=79.82  Aligned_cols=44  Identities=27%  Similarity=0.387  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT-------------GERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTS-------------CCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=79.58  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|.             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTS-------------SCCSSCCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcC-------------CCCCcCCCC
Confidence            58899999999999999999999999999999998             889999975

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.3e-10  Score=79.80  Aligned_cols=44  Identities=25%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGC-------------CCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.5e-10  Score=79.33  Aligned_cols=44  Identities=25%  Similarity=0.346  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGC-------------SCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.02  E-value=1.5e-10  Score=77.66  Aligned_cols=42  Identities=24%  Similarity=0.397  Sum_probs=39.6

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      |+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHA-------------GESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGC-------------CCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcC-------------CCCCCCCC
Confidence            6789999999999999999999999999999998             88999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=79.79  Aligned_cols=44  Identities=32%  Similarity=0.367  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHH-------------SCCCSSSTT
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.4e-10  Score=79.40  Aligned_cols=44  Identities=23%  Similarity=0.323  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT-------------GENPSGPSS   45 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGS-------------SSCCCSSSC
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.2e-10  Score=79.90  Aligned_cols=44  Identities=25%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTS-------------CSCCSSTTC
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.5e-10  Score=79.38  Aligned_cols=44  Identities=27%  Similarity=0.337  Sum_probs=41.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTS-------------SCCSSCSCC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.7e-10  Score=79.19  Aligned_cols=44  Identities=23%  Similarity=0.285  Sum_probs=41.3

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT-------------GERSSGPSS   45 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCS-------------SCCSCSTTC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            47899999999999999999999999999999998             889999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.6e-10  Score=79.36  Aligned_cols=44  Identities=30%  Similarity=0.443  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTS-------------SSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             899999975

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.6e-10  Score=79.30  Aligned_cols=44  Identities=27%  Similarity=0.355  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHT-------------SSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.02  E-value=1.5e-10  Score=79.44  Aligned_cols=44  Identities=30%  Similarity=0.384  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGT-------------TCCCSSCCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.3e-10  Score=79.92  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=41.1

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS-------------GERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTT-------------SCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcC-------------CCCCCCCCC
Confidence            47889999999999999999999999999999998             889999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=78.69  Aligned_cols=43  Identities=26%  Similarity=0.314  Sum_probs=40.6

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS-------------GQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSS-------------SSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.4e-10  Score=79.50  Aligned_cols=44  Identities=25%  Similarity=0.301  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTC-------------CSCCSSCCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=1.9e-10  Score=77.95  Aligned_cols=43  Identities=26%  Similarity=0.381  Sum_probs=40.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTT-------------TSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999985

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.01  E-value=2.1e-10  Score=76.85  Aligned_cols=42  Identities=17%  Similarity=0.304  Sum_probs=39.4

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      |+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT-------------VKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTS-------------CCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            6788999999999999999999999999999998             88999984

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=3.9e-10  Score=85.02  Aligned_cols=56  Identities=21%  Similarity=0.468  Sum_probs=50.8

Q ss_pred             ccCCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc--cccccCChHHhhhhhcc
Q 014041           99 EVRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK--CSKKYAVQSDWKAHSKI  161 (432)
Q Consensus        99 ~~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~--C~k~F~~~~~L~~H~~~  161 (432)
                      ....++|.|.+  |       ++.|.....|..|+++|++++||+|.+  |++.|.....|.+|+++
T Consensus        12 ~~~~~~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           12 SSRIRSHICSHPGC-------GKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCEECSSTTT-------CCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             ccccCceeCCCCCC-------ccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            35678999988  7       999999999999999999999999965  99999999999999875

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.9e-10  Score=78.96  Aligned_cols=44  Identities=23%  Similarity=0.346  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT-------------QETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHS-------------SCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.1e-10  Score=80.11  Aligned_cols=44  Identities=25%  Similarity=0.283  Sum_probs=41.2

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4678999999999999999999999999999998             8899999987

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.6e-10  Score=85.98  Aligned_cols=57  Identities=19%  Similarity=0.309  Sum_probs=50.9

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc-ccccccCChHHhhhhhcc-cCCc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE-KCSKKYAVQSDWKAHSKI-CGTR  165 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~-~C~k~F~~~~~L~~H~~~-~~~k  165 (432)
                      -++++|.|++|       ++.|. ...|..|+++ ++++||+|+ +|++.|..+..|..|+++ ...+
T Consensus         6 C~~~~~~C~~C-------~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            6 SGKRTQPCTYC-------TKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCCEEECSSS-------CCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCCeecccc-------CCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            47889999999       99999 9999999999 999999999 999999999999999988 4443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.8e-10  Score=79.13  Aligned_cols=44  Identities=23%  Similarity=0.390  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHT-------------GERHSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHT-------------CCCBTTTBC
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999964

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.9e-10  Score=78.90  Aligned_cols=44  Identities=30%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccC-CcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVR-KKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~-~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             + +++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT-------------RGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCC-------------SCCTTSSSCC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            48899999999999999999999999999999998             7 89999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=1.7e-10  Score=78.20  Aligned_cols=43  Identities=23%  Similarity=0.364  Sum_probs=40.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHT-------------GESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTC-------------CSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.00  E-value=2.3e-10  Score=78.53  Aligned_cols=44  Identities=25%  Similarity=0.388  Sum_probs=40.9

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      -|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSC-------------CSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            37889999999999999999999999999999998             889999974

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.99  E-value=1.5e-10  Score=79.44  Aligned_cols=38  Identities=26%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKEC-------GKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSS-------CCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8888999988       8999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=79.41  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVC-------GKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCeeCCCc-------CCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            8888999988       8999999999999999999999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=3.3e-10  Score=80.82  Aligned_cols=49  Identities=22%  Similarity=0.405  Sum_probs=43.4

Q ss_pred             ccccCCCCceecccccccccChHHHHHHHH-hcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCC
Q 014041           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGD  123 (432)
Q Consensus        55 ~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~  123 (432)
                      ...|.++++|+|++|++.|.....|.+|++ +|.             ++++|.|++|       ++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~-------------~~k~~~C~~C-------~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQVW-------VSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSSS-------CCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcC-------------CCCCccCCCC-------CCCCCC
Confidence            346788999999999999999999999987 888             8899999999       888864

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=1.4e-10  Score=78.74  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=34.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            7 GEKPFGCSCC-------EKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SCCCEECSSS-------SCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCccCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=79.29  Aligned_cols=38  Identities=16%  Similarity=0.132  Sum_probs=34.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            9 GERPHKCNEC-------GKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCeeCCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=79.58  Aligned_cols=38  Identities=21%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNEC-------GKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSS-------CCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCeECCCC-------CchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.99  E-value=1.6e-10  Score=79.25  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=33.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNEC-------GKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSS-------CCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCC-------cchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.5e-10  Score=79.45  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDC-------GKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTT-------CCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCeECCCC-------CceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.7e-10  Score=79.24  Aligned_cols=44  Identities=34%  Similarity=0.399  Sum_probs=41.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.+...|..|+++|+             ++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS-------------REKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHH-------------HTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999975

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.4e-10  Score=79.65  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=32.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTEC-------GKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=1.6e-10  Score=79.31  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNEC-------GKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCcCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.4e-10  Score=79.51  Aligned_cols=38  Identities=24%  Similarity=0.287  Sum_probs=30.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCeECCCC-------CCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            7778888887       8888888888888888888888888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.9e-10  Score=78.84  Aligned_cols=38  Identities=24%  Similarity=0.244  Sum_probs=34.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            9 GEKPYICAEC-------GKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCcCeECCCC-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.7e-10  Score=79.16  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=34.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNEC-------GKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSS-------CCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCEeCCcC-------CCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=2.9e-10  Score=77.14  Aligned_cols=43  Identities=30%  Similarity=0.381  Sum_probs=40.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA-------------RKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCC-------------CCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999984

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=79.20  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            9 GERPYICTVC-------GKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.6e-10  Score=79.29  Aligned_cols=38  Identities=21%  Similarity=0.242  Sum_probs=33.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHEC-------GKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=79.02  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=33.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSIC-------GKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCcCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888999888       8899999999999988988899998877

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.7e-10  Score=79.17  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            9 GEKPYGCSEC-------GKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCBCSSS-------CCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCcCCCcc-------ChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=79.01  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSEC-------GKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcCeECCCC-------CCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.98  E-value=1.8e-10  Score=79.03  Aligned_cols=38  Identities=21%  Similarity=0.224  Sum_probs=34.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHEC-------GKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCcCcCCCCC-------CcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.98  E-value=1.5e-10  Score=79.51  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=32.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVEC-------GKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSS-------CCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.6e-10  Score=79.28  Aligned_cols=38  Identities=21%  Similarity=0.194  Sum_probs=33.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            9 GEKPYKCEEC-------GKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCcCccCCCc-------cchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.5e-10  Score=79.35  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=31.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            9 GEKLYNCKEC-------GKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCBTTT-------TBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCeECCCC-------CCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.7e-10  Score=78.01  Aligned_cols=44  Identities=25%  Similarity=0.280  Sum_probs=41.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|.             ++++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHT-------------GKKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSC-------------CCCCCCSCC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhC-------------CCCCCCCCC
Confidence            58899999999999999999999999999999998             889999974

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=2.6e-10  Score=77.36  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|.             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA-------------AKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGC-------------CCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCC
Confidence            58899999999999999999999999999999998             88999985

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.7e-10  Score=79.20  Aligned_cols=38  Identities=18%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDC-------GKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSS-------CCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCccc-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7778888887       8888888888888888888888888776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.9e-10  Score=78.90  Aligned_cols=38  Identities=13%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDIC-------GKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSS-------CCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCcCCCcC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888999888       8899999999999888988999998887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2e-10  Score=78.65  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDC-------GKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCccCCcc-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888889888888888888887

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.97  E-value=1.6e-10  Score=79.32  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=30.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCREC-------DMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSS-------CCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            7778888887       8888888888888888888888888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=2.2e-10  Score=78.48  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            9 GEKPYVCDYC-------GKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCeECCCC-------ChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.8e-10  Score=78.94  Aligned_cols=38  Identities=16%  Similarity=0.081  Sum_probs=32.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECREC-------GKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTT-------CCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCeeCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.97  E-value=1.5e-10  Score=79.35  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=31.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            9 GVKPYGCSQC-------AKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCceECCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888776

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.97  E-value=3.4e-10  Score=75.82  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=39.0

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      |+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS-------------QSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTT-------------CCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcC-------------CCCCCCC
Confidence            7789999999999999999999999999999998             8899987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.5e-10  Score=79.28  Aligned_cols=38  Identities=18%  Similarity=0.205  Sum_probs=31.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            9 GEKPYKCNEC-------GKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSSEETTT-------TEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCeECCCc-------ChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888877

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.9e-10  Score=78.82  Aligned_cols=38  Identities=24%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNEC-------GKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTT-------CCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888877

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.97  E-value=3.5e-10  Score=77.18  Aligned_cols=42  Identities=19%  Similarity=0.434  Sum_probs=40.0

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      ..|+++++|+|++|++.|..+..|..|+++|+             ++++|.|++|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~c   44 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSS   44 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCC
Confidence            57899999999999999999999999999999             8999999998

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=1.9e-10  Score=78.97  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNEC-------GKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEcccc-------CcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.9e-10  Score=78.82  Aligned_cols=38  Identities=18%  Similarity=0.189  Sum_probs=32.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+.|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDEC-------GKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTT-------CCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCc-------CcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.96  E-value=1.9e-10  Score=78.81  Aligned_cols=38  Identities=24%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKEC-------GKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCcCeECCcc-------ccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888877

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=1.9e-10  Score=78.96  Aligned_cols=38  Identities=21%  Similarity=0.173  Sum_probs=33.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHEC-------GRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSS-------CCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCeECCcC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888999888       8899999999999888888889988887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.4e-10  Score=78.35  Aligned_cols=38  Identities=18%  Similarity=0.160  Sum_probs=34.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.+|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCREC-------GEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCEEcccc-------ChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=2.2e-10  Score=78.54  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=34.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            9 GEKPFKCEEC-------GKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCcCCCCC-------CCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.3e-10  Score=78.40  Aligned_cols=43  Identities=26%  Similarity=0.285  Sum_probs=40.8

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE-------------RTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHH-------------HSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999996

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=1.9e-10  Score=79.01  Aligned_cols=38  Identities=24%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMEC-------GKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTT-------TBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.7e-10  Score=76.41  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=39.0

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      |+++|+++++|+|++|++.|.....|..|+++|.             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHH-------------SCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcC-------------CCCCCCC
Confidence            7889999999999999999999999999999998             8899987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=76.54  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=39.1

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHT-------------GSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTS-------------CCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhC-------------CCCCCCC
Confidence            37889999999999999999999999999999998             8889987

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=2.5e-10  Score=78.30  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=34.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            9 GEKPYKCVEC-------GKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCeECccc-------CchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            8889999998       9999999999999999999999999887

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.95  E-value=5.8e-10  Score=79.48  Aligned_cols=46  Identities=17%  Similarity=0.298  Sum_probs=40.7

Q ss_pred             ccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-hhcCCCcccccccccccCC
Q 014041           99 EVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKCSKKYAV  151 (432)
Q Consensus        99 ~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H~gekp~~C~~C~k~F~~  151 (432)
                      +.++++|.|++|       ++.|.....|..|++ +|++++||+|++|++.|..
T Consensus         7 ~~~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            7 GSVGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCSSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCeECCCC-------CcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            347889999998       999999999999987 8999999999999999875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.95  E-value=2.9e-10  Score=78.00  Aligned_cols=38  Identities=13%  Similarity=0.105  Sum_probs=33.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            9 GVNPYKCSQC-------EKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888889899888888888888887

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4.3e-10  Score=76.37  Aligned_cols=43  Identities=23%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHA-------------GESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHT-------------TSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHC-------------CCCCCCCC
Confidence            47889999999999999999999999999999998             88999985

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.7e-10  Score=79.17  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNEC-------GKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSS-------CCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCeECCcC-------CchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=4.3e-10  Score=76.74  Aligned_cols=43  Identities=30%  Similarity=0.383  Sum_probs=39.9

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      +.++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT-------------GEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTS-------------SCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            5678999999999999999999999999999998             889999974

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=3e-10  Score=76.28  Aligned_cols=41  Identities=29%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      |+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHT-------------GSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTS-------------CCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcC-------------CCCCCCC
Confidence            7889999999999999999999999999999998             8888887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=1.8e-10  Score=79.05  Aligned_cols=38  Identities=16%  Similarity=0.213  Sum_probs=32.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            9 GEKPYKCEKC-------GKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SCCSEEETTT-------TEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            7788888888       8888888888888888888888888877

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.94  E-value=2.9e-10  Score=81.06  Aligned_cols=46  Identities=13%  Similarity=0.166  Sum_probs=44.0

Q ss_pred             CCCCCChhhhhcCccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           42 GTPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        42 g~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++.|.....|..|+++|+++++|.|++||+.|.....|..|+++|+
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~   48 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhc
Confidence            5778888999999999999999999999999999999999999998

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.94  E-value=5.3e-10  Score=77.54  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=38.8

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      ..|.++++|+|++|++.|.....|..|+++|+             ++++|.|++|
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYSSGPS   46 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCCSCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcC-------------CCCCccCCCC
Confidence            35778899999999999999999999999998             8899999999

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.2e-10  Score=78.57  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=33.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            9 GEKPYGCNEC-------GKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEEETTT-------TEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCcCeECCCC-------CcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            8888999988       8999999999999999999999999887

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5.2e-10  Score=76.75  Aligned_cols=43  Identities=28%  Similarity=0.247  Sum_probs=40.0

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      ++++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT-------------GEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHS-------------SCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhC-------------CCCCCCCCC
Confidence            4678999999999999999999999999999998             889999975

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=2.3e-10  Score=78.36  Aligned_cols=38  Identities=16%  Similarity=0.076  Sum_probs=33.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            9 GEKPCKCTEC-------GKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCeeCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888877

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.9e-10  Score=77.94  Aligned_cols=38  Identities=26%  Similarity=0.308  Sum_probs=32.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAEC-------GKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7888888888       8888888888888888888888888765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=2.4e-10  Score=78.33  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            9 GEKPFKCEEC-------GKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEEETTT-------TEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7777888777       7788888888888777777778887776

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.92  E-value=4.4e-11  Score=88.17  Aligned_cols=48  Identities=15%  Similarity=0.288  Sum_probs=39.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhh
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAH  158 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H  158 (432)
                      ++++|.|++|       ++.|.....|.   ++|++++||+|++|++.|.....+..+
T Consensus        11 ~~k~~~C~~C-------~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A           11 NRASFKCPVC-------SSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             SSSEEECSSS-------CCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             CCCCccCCCC-------CchhccHHHhH---hhcCCCCCEECCCCCCccccCcccccc
Confidence            8888999888       88888888776   788888999999999988877766543

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=1.7e-10  Score=79.10  Aligned_cols=38  Identities=18%  Similarity=0.236  Sum_probs=28.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGEC-------GKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTT-------CCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            6777777777       7777777777777777777777777766

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.4e-10  Score=76.83  Aligned_cols=43  Identities=28%  Similarity=0.341  Sum_probs=40.4

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT-------------RKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHC-------------CCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhC-------------CCCCCCCC
Confidence            58899999999999999999999999999999998             88999883

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4e-10  Score=77.27  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            9 GEKPFKCKEC-------GKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCEECCcC-------CchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            8888999988       9999999999999999999999999875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6.6e-10  Score=76.69  Aligned_cols=45  Identities=29%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             cCccccCCCCceecc--cccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCC
Q 014041           53 LSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      .|.++|+++++|+|+  +|++.|.....|..|+++|+             ++++|.|.+|
T Consensus         2 ~~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   48 (48)
T 2ent_A            2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS-------------GVKPSGPSSG   48 (48)
T ss_dssp             CCCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSC-------------CCCSCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            367889999999998  89999999999999999998             8999999987

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=6.7e-10  Score=75.45  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=39.7

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      .|+++|+++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHA-------------GVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGS-------------SCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhc-------------CCCCCCC
Confidence            58899999999999999999999999999999998             8888887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4e-10  Score=77.44  Aligned_cols=38  Identities=29%  Similarity=0.327  Sum_probs=31.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-hhcCCCccccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEKC  145 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H~gekp~~C~~C  145 (432)
                      ++++|.|++|       ++.|.....|..|++ +|++++||+|++|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIEC-------GKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSS-------CCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCEECCcc-------CchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            7788888887       888888888888888 7888888888776

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=7.2e-10  Score=74.95  Aligned_cols=42  Identities=17%  Similarity=0.320  Sum_probs=38.7

Q ss_pred             ccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        55 ~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .++|+++++|+|++|++.|.....|..|+++|+             ++++|.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~   43 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTH-------------SDKSGPSSG   43 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHT-------------CTTCSSSCC
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHhhC-------------CCCCccCCC
Confidence            357899999999999999999999999999998             889999974

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.87  E-value=3.2e-10  Score=83.43  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             hhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHH
Q 014041           51 IALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGI  127 (432)
Q Consensus        51 l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L  127 (432)
                      |..|+++|+++++|+|++||+.|.....|.   ++|.             ++++|.|++|       ++.|.....+
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~-------------~~k~~~C~~C-------~k~f~~~~~~   55 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDP-------------MTGTFRCTFC-------HTEVEEDESA   55 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEET-------------TTTEEBCSSS-------CCBCEECTTC
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcC-------------CCCCEECCCC-------CCccccCccc
Confidence            567899999999999999999999988886   7888             8899999999       9998766543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.86  E-value=5.6e-10  Score=79.51  Aligned_cols=52  Identities=13%  Similarity=0.174  Sum_probs=38.8

Q ss_pred             cccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccc
Q 014041           70 NKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (432)
Q Consensus        70 gk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~  141 (432)
                      +|.|.....|..|+++|.             ++++|.|++|       ++.|.....|..|+++|++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPIC-------YAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTT-------CCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCC-------CcccCCHHHHHHHHHHhccCCCCC
Confidence            466777777777777777             6777777777       777777777777777777777763

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=5.5e-10  Score=74.79  Aligned_cols=40  Identities=20%  Similarity=0.520  Sum_probs=32.0

Q ss_pred             HHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceee
Q 014041          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRC  169 (432)
Q Consensus       130 H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C  169 (432)
                      |+++|++++||+|++|++.|.....|..|+++ ++++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            56777888888888888888888888888888 77788776

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=1.5e-09  Score=72.42  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYIC  107 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  107 (432)
                      ++|+++++|+|++|++.|.....|..|+++|+             ++++|.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            57899999999999999999999999999998             8889987

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=1e-09  Score=75.17  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=31.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            9 GQRPYECIEC-------GKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSEECSSS-------CCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCcCcCCCCC-------CCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            7888888888       888888888888888888888888864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.84  E-value=1.1e-09  Score=75.13  Aligned_cols=37  Identities=19%  Similarity=0.245  Sum_probs=32.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            9 GEKPFECAEC-------GKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCEECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7888888888       888888888888888888888888864

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.83  E-value=1.3e-09  Score=75.47  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=36.9

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK  147 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k  147 (432)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|+|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcCeeCCCC-------CcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            47789999998       999999999999999999999999999986

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.2e-09  Score=74.63  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=32.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEEC-------GKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTT-------CCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCC-------CCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            7888999888       888999999999988888888888864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.83  E-value=1.3e-09  Score=72.92  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=27.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            7 GENPYECSEC-------GKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCccCCCc-------ChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            7777777777       77777777788887777777777774

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.1e-09  Score=74.97  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=34.1

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            8 TGEKPYKCDVC-------HKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCSEECSSS-------CCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCeeCccc-------CcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            37888999888       8999999999999988988899998887

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.83  E-value=1.3e-09  Score=74.51  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            9 GEKPYKCNEC-------GKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECTTS-------CCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CCCCeecccc-------CChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            7888999888       888999999999988888888888864

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.2e-09  Score=74.73  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=29.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            9 GENPFICSEC-------GKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCTTT-------CCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCEECCcc-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7778888887       888888888888888888888888763

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=2e-10  Score=91.04  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=43.3

Q ss_pred             hcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHH
Q 014041           52 ALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHF  131 (432)
Q Consensus        52 ~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~  131 (432)
                      ..+.++|+++++|+|++|++.|.....|..|+++|+             ++++|.|..|       .+    ...|..|.
T Consensus        14 ~~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~~-------~~----~~~~~~~~   69 (88)
T 1x6f_A           14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------EEFQKRAKRQ-------ER----RKQLLSKQ   69 (88)
T ss_dssp             CCCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------HHHHHHCCCC-------SC----CCCCCCCC
T ss_pred             eccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------CCCCcccchh-------hh----HHHHHhhh
Confidence            344566788888888888888888888888888887             7778888776       32    23345556


Q ss_pred             hhhcC
Q 014041          132 SRKHG  136 (432)
Q Consensus       132 ~~H~g  136 (432)
                      +.|.+
T Consensus        70 ~~~~~   74 (88)
T 1x6f_A           70 KYADG   74 (88)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            66655

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=72.53  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            7 GEKPYSCAEC-------KETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCCSCBCTTT-------CCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7777777777       77777777777777777777777773

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.2e-09  Score=74.75  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            9 GEKPYKCNEC-------GKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCBCSSS-------CCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6777777777       777777777777777777777777753

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.3e-09  Score=74.72  Aligned_cols=37  Identities=22%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            9 GERHYECSEC-------GKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CCCCeECCcC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7777888877       788888888888888888888887753

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=74.30  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            9 GEKPYECKVC-------SKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7888888888       888888888888888888888888864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.5e-09  Score=74.21  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+.
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            9 GERHYECSEC-------GKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             SCCCEECSSS-------CCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCCCCC-------CcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            7788888887       888888888888888888888888853

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.3e-09  Score=74.48  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            9 GEKPFECSEC-------QKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCcCCCCC-------CcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7788888888       888888888888888888888888864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.5e-09  Score=74.27  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            9 GEKPYECSDC-------GKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             SCCSSCCSSS-------CCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCcCCCCC-------CchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            7778888887       888888888888888888888888763

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=74.02  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNEC-------KKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTT-------CCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCcc-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            7888888888       888888888888888888888888864

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.4e-09  Score=74.46  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=26.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            9 GGKPYQCNEC-------GKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSCSSSCCSS-------CCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            6677777777       77777777777777777777777775

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.4e-09  Score=74.41  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=28.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            9 GEKPYICNEC-------GKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSS-------CCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCcCEECCCC-------ChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            7777888877       788888888888887787788887753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=74.31  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=26.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            9 GEKPFQCEEC-------GKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSBCCSSS-------CCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCcCCCCCCC-------CcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            6677777777       77777777777777777777777775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=74.52  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            9 GEKPYKCNEC-------GKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCTTCCSSS-------CCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCeECCCC-------CcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6777777777       777877777888877777777777753

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.5e-09  Score=74.40  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=33.5

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++|
T Consensus         8 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            8 EGEKPYQCSEC-------GKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SCCCTTCCSSS-------CCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCeeCCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            37888888888       8888888888888888888888888877

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.6e-09  Score=74.15  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=28.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            9 GEKPYKCNEC-------GKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCTTT-------TCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CCCCeECCcC-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            6777777777       77777777777777777777777775

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.6e-09  Score=74.14  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=28.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            9 GEKCYKCDVC-------GKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCBCSSS-------CCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6777777777       777777777777777777777777753

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.4e-09  Score=74.50  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=26.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            9 GEKPYKCQVC-------GKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SCCSCBCSSS-------CCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCcccCCCCC-------CcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            6677777777       77777777777777777777777775

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.7e-09  Score=73.97  Aligned_cols=37  Identities=24%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            9 GEKPYRCGEC-------GKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            7778888887       888888888888888888888888763

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.4e-09  Score=72.38  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            9 GEKPYECNEC-------QKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCCSEECTTT-------CCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCCCeECCCC-------CcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            7788888888       88888888888888888888888874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=73.70  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=28.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            9 GKKPYECKEC-------RKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCSCCCSSS-------CCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCc-------CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7777888877       78888888888888888888888775

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=72.68  Aligned_cols=36  Identities=22%  Similarity=0.276  Sum_probs=25.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            9 GMKPYVCNEC-------GKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SSSSSCCTTT-------CCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCeECCCC-------CCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            6677777776       77777777777777777777777763

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.2e-09  Score=73.44  Aligned_cols=36  Identities=22%  Similarity=0.394  Sum_probs=30.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            9 GEKPYKCSDC-------GKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             SCCCEECSSS-------CCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCEECccc-------CCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            7888888888       88888888888888888888888885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=73.81  Aligned_cols=36  Identities=17%  Similarity=0.144  Sum_probs=29.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            9 GEKPYSCNVC-------GKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCSEEETTT-------TEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CCCCeECccc-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7788888887       88888888888888888888888885

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=73.80  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=29.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            9 GERPFKCNEC-------GKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCCCSSS-------CCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            7778888887       88888888888888888888888875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.5e-09  Score=81.97  Aligned_cols=67  Identities=13%  Similarity=0.145  Sum_probs=52.9

Q ss_pred             hhhhcCccccCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHH
Q 014041           49 EVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIK  128 (432)
Q Consensus        49 ~~l~~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~  128 (432)
                      ..|..|.++|.++++|.|+.|++.|. ...|..|+ .|.             ++++|.|+.|       ++.|. +..|.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c-------------~~~~~~C~~C-------~~~~~-~~~l~   59 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYC-------------GARTELCGNC-------GRNVL-VKDLK   59 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHH-------------HHCEEECSSS-------CCEEE-TTGGG
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHc-------------CCCceEcccC-------CCcCc-HHHHH
Confidence            34677888888888888888888884 77888888 777             7888888887       88776 47788


Q ss_pred             HHHhhhcCCC
Q 014041          129 KHFSRKHGEK  138 (432)
Q Consensus       129 ~H~~~H~gek  138 (432)
                      .|+++|.+++
T Consensus        60 ~H~~~c~~~~   69 (75)
T 2d9k_A           60 THPEVCGREG   69 (75)
T ss_dssp             THHHHBTTBS
T ss_pred             HHHHHccCCc
Confidence            8888877653

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.9e-09  Score=72.05  Aligned_cols=36  Identities=11%  Similarity=0.137  Sum_probs=28.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            9 TRKRYECSKC-------QATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSSEECTTT-------CCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            7777888877       78888888888888888888887774

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=1.9e-09  Score=72.99  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eoj_A            9 GENPYECCEC-------GKVFSRKDQLVSHQKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSCEETTT-------TEECSSHHHHHHHHTTSSSSCSCCC
T ss_pred             CCcCeeCCCC-------CCccCCHHHHHHHHHHcCCCCCCCC
Confidence            5556666665       6666666666666666666666655

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.75  E-value=4.6e-09  Score=71.52  Aligned_cols=40  Identities=15%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCS  146 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~  146 (432)
                      .++++|.|++|       ++.|.....|..|+++|+++++|.|++|+
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            6 SGEKPYSCPVC-------GLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SSCCSSEETTT-------TEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCCcCCCC-------CcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            47888999888       88899999999999899888999998886

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.75  E-value=3.3e-09  Score=70.87  Aligned_cols=35  Identities=9%  Similarity=0.135  Sum_probs=28.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         8 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            8 GETPYLCGQC-------GKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCeECCCC-------CcccCCHHHHHHHhhhcCCCCCCCC
Confidence            7788888887       8888888888888888888888877

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=2.5e-09  Score=71.54  Aligned_cols=35  Identities=14%  Similarity=0.212  Sum_probs=27.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            8 GEKPYKCETC-------GARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SSCSEECTTT-------CCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCEeCCCc-------ChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            7777888777       7778777778888777777777776

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.6e-09  Score=71.54  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=24.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         8 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            8 GEKPYPCEIC-------GTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSCCBCCSSS-------CCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCEECCCC-------CCccCCHHHHHHHHHhcCCCCCCCC
Confidence            6667777776       7777777777777777777777666

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.74  E-value=2.5e-09  Score=73.22  Aligned_cols=37  Identities=11%  Similarity=0.137  Sum_probs=30.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC-CCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG-EKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g-ekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++ ++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            9 KEKCFKCNKC-------EKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CSCCEECSSS-------CCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCCCEECcCC-------CCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            7788888888       8888888888888888888 88888863

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=2.9e-09  Score=72.11  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=27.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|.
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            9 GENPFKCSKC-------DRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCCSEECSSS-------SCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCCCeECCCC-------CchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            7777777777       77777777787787777777777773

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.73  E-value=4.3e-09  Score=71.30  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=28.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~~~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            9 AKTTSECQEC-------GKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSCCCCCTTT-------CCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            7778888887       88888888888888888888888774

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.9e-09  Score=72.90  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=23.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            9 GEKPYECDVC-------RKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCBCTTT-------CCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCc-------CchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5566666666       66666666666666666666666664

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=4.3e-09  Score=72.46  Aligned_cols=39  Identities=13%  Similarity=0.154  Sum_probs=33.8

Q ss_pred             cCCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccc
Q 014041          100 VRKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKC  145 (432)
Q Consensus       100 ~~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C  145 (432)
                      .++++|.|.  .|       ++.|.....|..|+++|++++||+|.+|
T Consensus         8 ~~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            8 TGEKPFACTWPGC-------GWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCCEECCSSSC-------CCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCeECCCCCC-------CCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            378889997  77       8999999999999999999999999887

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=3.1e-09  Score=72.61  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            9 GEKPYECNQC-------GKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSEETTT-------TEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCeECCCC-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5666666666       66666666666666666666666664

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=2.9e-09  Score=72.81  Aligned_cols=36  Identities=14%  Similarity=0.120  Sum_probs=29.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCE  143 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~  143 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|+
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKEC-------GMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSS-------CCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCccc-------ChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            7778888887       88888888888888888888888874

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=7.6e-09  Score=70.09  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=26.6

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||.|
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            9 GEKPYECNEC-------GKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCcCeECCCC-------CcccCchHHHHHHHhHhcCCCCCCC
Confidence            6777777777       7777777777777777777777776

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1e-08  Score=70.12  Aligned_cols=37  Identities=14%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         9 ~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            9 GERGHRCSDC-------GKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCSSS-------CCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCcCCCCC-------CCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            7788888888       888888888888888888888888863

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.66  E-value=1.2e-08  Score=67.16  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             cCCCCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCC
Q 014041           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICP  108 (432)
Q Consensus        58 h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  108 (432)
                      |+++++|+|++||+.|.....|..|+++|+             ++++|.|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCccceec
Confidence            578899999999999999999999999998             88888763

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=1.5e-08  Score=68.23  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=33.3

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         6 ~~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            6 SGNGAFFCNEC-------DCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SSSCCBCCSSS-------CCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCCCEECCCC-------CCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            37889999998       999999999999999999999999864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=4e-09  Score=71.37  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=20.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         9 ~~~~~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eox_A            9 DSKSYNCNEC-------GKAFTRIFHLTRHQKIHTRKSGPSS   43 (44)
T ss_dssp             CCCCEEETTT-------TEEESSSHHHHTTHHHHCCCCCCSC
T ss_pred             CCCCeECccc-------CcccCCHHHHHHHHHHhCCCCCCCC
Confidence            5555555555       5555555555555555555555555

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=7.4e-09  Score=70.43  Aligned_cols=38  Identities=16%  Similarity=0.230  Sum_probs=30.6

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      .++++|.|++|       ++.|.....|..|+++|++++||+|++
T Consensus         8 ~~~k~~~C~~C-------~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            8 TGQKPFECTHC-------GKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CSCCSEEETTT-------TEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCcCccCCCC-------CCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            37788888888       888888888888888888888888863

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.6e-09  Score=81.91  Aligned_cols=51  Identities=20%  Similarity=0.425  Sum_probs=28.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +.++|.|++|       ++.| ....|..|+ .|.+++||.|+.|++.|. ...|..|+++
T Consensus        14 ~~r~~~C~~C-------~~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~   64 (75)
T 2d9k_A           14 PLRLAVCQHC-------DLEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTHPEV   64 (75)
T ss_dssp             CCCCEECSSS-------CCEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTHHHH
T ss_pred             CCcccCCccc-------ChHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHHHHH
Confidence            5555555555       5555 355555555 555555555555555544 2555555554

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=2.5e-08  Score=64.49  Aligned_cols=33  Identities=21%  Similarity=0.493  Sum_probs=31.1

Q ss_pred             ccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           55 PKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        55 ~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|+++++|+|++|++.|.....|..|+++|+
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~   33 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNH   33 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHc
Confidence            357899999999999999999999999999998

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.57  E-value=3.3e-08  Score=63.94  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=32.8

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+++|+++++|+|++|++.|.....|..|+++|.
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            7889999999999999999999999999999997

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=2.8e-08  Score=65.99  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=26.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|
T Consensus         7 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            7 GQRVYECQEC-------GKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCCCeECCCC-------CCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            6677777777       7777777777777777777777776

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.53  E-value=5.7e-08  Score=61.80  Aligned_cols=31  Identities=23%  Similarity=0.484  Sum_probs=29.4

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+++++|+|++|++.|.....|..|+++|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            4788999999999999999999999999998

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.52  E-value=3.8e-09  Score=83.66  Aligned_cols=50  Identities=12%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||+|..|.    ....|..|.++
T Consensus        22 ~~kpy~C~~C-------~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~   71 (88)
T 1x6f_A           22 QNSTYQCKHC-------DSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKY   71 (88)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCC
T ss_pred             CCCCCcCCCC-------CCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhcc
Confidence            8899999999       99999999999999999999999997654    46667777777

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.51  E-value=6.1e-08  Score=61.79  Aligned_cols=31  Identities=26%  Similarity=0.510  Sum_probs=29.4

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+++++|+|++|++.|.....|..|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            4788999999999999999999999999998

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.49  E-value=7.6e-08  Score=71.85  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             ccCCCCceeccc--ccccccChHHHHHHH-HhcCCCcccccccccccCCcceeCCCC
Q 014041           57 SLMATNRFLCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKEVRKKVYICPEK  110 (432)
Q Consensus        57 ~h~~~k~f~C~~--Cgk~F~~~~~L~~H~-r~H~~~~~~~~~~~~~~~~k~y~C~~C  110 (432)
                      ..+++|||+|++  |+|.|.+..+|.+|+ ++|+             ++|||.|..-
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHT-------------gEKP~~~~~~   64 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK-------------SDLPAFSAEV   64 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS-------------SCCCCCCCSC
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCC-------------CCCCcccccc
Confidence            467899999975  999999999999997 6898             9999999764

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.41  E-value=1.1e-07  Score=60.10  Aligned_cols=26  Identities=35%  Similarity=0.635  Sum_probs=25.1

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|++||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~   26 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHE   26 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhC
Confidence            58999999999999999999999998

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=2.2e-07  Score=59.56  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=30.1

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .+|+++++|+|++|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            46889999999999999999999999999998

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=2e-07  Score=59.62  Aligned_cols=31  Identities=26%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+++++|+|++|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5889999999999999999999999999998

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.7e-07  Score=60.56  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             cccCCCCceecccccccccCh-HHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRD-QNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~-~~L~~H~r~H~   87 (432)
                      ++|+++++|+|++|++.|... ..|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            468899999999999999999 99999999997

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.37  E-value=1.9e-07  Score=59.92  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.9

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ..|+++++|+|++|++.|.....|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            36788999999999999999999999999998

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.8e-07  Score=60.64  Aligned_cols=33  Identities=18%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             ccccCCCCceecccccccccChHHHHHH-HHhcC
Q 014041           55 PKSLMATNRFLCEICNKGFQRDQNLQLH-RRGHN   87 (432)
Q Consensus        55 ~~~h~~~k~f~C~~Cgk~F~~~~~L~~H-~r~H~   87 (432)
                      +++|++++||+|++|++.|..+..|..| ++.|+
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHcc
Confidence            3578999999999999999999999999 99997

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.35  E-value=3.2e-07  Score=60.05  Aligned_cols=35  Identities=11%  Similarity=0.236  Sum_probs=30.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++||.|
T Consensus         3 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            3 PPRSYTCSFC-------KREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CSSSEECTTT-------CCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCceECCCC-------CcccCCHHHHHHHHHHcCCCcccee
Confidence            6788999998       9999999999999999999988876

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=2.6e-07  Score=61.00  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=29.0

Q ss_pred             ccCCCCceeccc--ccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .+++++||+|++  |+|.|.++..|.+|+++|+
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Ht   35 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHT   35 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHS
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            467899999986  9999999999999999998

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=3.2e-07  Score=58.62  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=29.4

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|.++++|+|++|++.|.....|..|+++|+
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHT   33 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhc
Confidence            5788999999999999999999999999998

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.31  E-value=2.6e-07  Score=60.02  Aligned_cols=30  Identities=27%  Similarity=0.712  Sum_probs=28.1

Q ss_pred             cCCCCceecc--cccccccChHHHHHHHHhcC
Q 014041           58 LMATNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        58 h~~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+++++|+|+  .|++.|.....|..|+++|+
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   32 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhC
Confidence            5788999999  59999999999999999998

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=3.9e-07  Score=58.37  Aligned_cols=31  Identities=42%  Similarity=0.581  Sum_probs=29.2

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .|.++++|+|++|++.|.....|..|+++|+
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHT   33 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhC
Confidence            4678899999999999999999999999998

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.28  E-value=5.7e-07  Score=67.12  Aligned_cols=38  Identities=11%  Similarity=0.084  Sum_probs=28.6

Q ss_pred             cCCcceeCCC--CCCCCCCCCCccCCHHHHHHHH-hhhcCCCcccccc
Q 014041          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHF-SRKHGEKKWKCEK  144 (432)
Q Consensus       100 ~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~-~~H~gekp~~C~~  144 (432)
                      .++|||+|.+  |       +++|...+.|..|+ ++|+++|||.|..
T Consensus        23 sGEKPYkC~~~~C-------gKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           23 SPYRPYRCVHQGC-------FAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CSSCSCBCCSTTC-------CCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             cCCCCeECCCCCc-------ChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            4778888865  6       88888888888886 5688888887743

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.27  E-value=3.7e-07  Score=63.09  Aligned_cols=32  Identities=22%  Similarity=0.489  Sum_probs=29.4

Q ss_pred             ccCCCCceecccccccccChHHHHHHHH-hcCC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRR-GHNL   88 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r-~H~~   88 (432)
                      +|+++++|+|++|||.|.....|..|++ +|.+
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~   33 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLA   33 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCC
Confidence            4889999999999999999999999999 9983

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.25  E-value=7.1e-07  Score=56.26  Aligned_cols=33  Identities=15%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKC  142 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C  142 (432)
                      +||.|++|       ++.|.....|..|+++|++++||.+
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPEC-------PKRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSS-------CCCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCC-------CchhCCHHHHHHHHHHhCCCCCCCC
Confidence            47888888       8888888888889888888888763

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.20  E-value=7.1e-07  Score=53.17  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=25.1

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|+|++||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            478999999999999999999999984

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=4.5e-07  Score=58.38  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++|
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            6 SGRSYSCPVC-------EKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCEETTT-------TEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCcCCCCC-------CCccCCHHHHHHHHHHHcCCCC
Confidence            5666666666       6666666666666666666654

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.19  E-value=6.6e-07  Score=57.56  Aligned_cols=31  Identities=19%  Similarity=0.473  Sum_probs=15.2

Q ss_pred             HhhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          131 FSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       131 ~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +++|++++||+|++|++.|.....|..|+++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   33 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKR   33 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGG
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHH
Confidence            3444444555555555555555555555444

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.19  E-value=5.6e-07  Score=53.80  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=25.0

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|+|++||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999884

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.12  E-value=1.2e-07  Score=59.44  Aligned_cols=26  Identities=31%  Similarity=0.539  Sum_probs=24.8

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +||+|++||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            57999999999999999999999998

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.12  E-value=1.9e-06  Score=54.42  Aligned_cols=32  Identities=16%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++|
T Consensus         4 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            4 GSSGYVCALC-------LKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCSEECSSS-------CCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCeECCCC-------cchhCCHHHHHHHHHHHcCCCC
Confidence            6677777777       7777777777777777777664

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.11  E-value=1.3e-06  Score=56.43  Aligned_cols=31  Identities=26%  Similarity=0.545  Sum_probs=28.7

Q ss_pred             ccCCCCceeccc--ccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .|+++++|+|++  ||+.|.....|..|+++|+
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~   34 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHT   34 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            478899999995  9999999999999999998

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.10  E-value=2.3e-06  Score=54.20  Aligned_cols=32  Identities=13%  Similarity=0.230  Sum_probs=22.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++|
T Consensus         4 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            4 GKRPFVCRIC-------LSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCcCeeCCCC-------CcccCCHHHHHHHHHHcCCCCC
Confidence            6667777776       7777777777777777776654

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.08  E-value=6.5e-07  Score=58.29  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=12.7

Q ss_pred             cCCCcccccccccccCChHHhhhhh
Q 014041          135 HGEKKWKCEKCSKKYAVQSDWKAHS  159 (432)
Q Consensus       135 ~gekp~~C~~C~k~F~~~~~L~~H~  159 (432)
                      .|||||+|++|+|.|..++.|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3445555555555555555555554

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.08  E-value=1.8e-06  Score=52.17  Aligned_cols=27  Identities=19%  Similarity=0.549  Sum_probs=25.6

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|.|++||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~   27 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHD   27 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhc
Confidence            478999999999999999999999998

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.08  E-value=9.9e-07  Score=60.48  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=31.8

Q ss_pred             hcCccccCCCCceecc--cccccccChHHHHHHHHhcC
Q 014041           52 ALSPKSLMATNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        52 ~~h~~~h~~~k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ..|...|+++++|+|+  .||+.|.....|..|+++|+
T Consensus         7 ~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~   44 (47)
T 1ncs_A            7 IDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             GGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             HHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHcc
Confidence            3445669999999996  79999999999999999998

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.06  E-value=1.6e-06  Score=51.95  Aligned_cols=27  Identities=26%  Similarity=0.659  Sum_probs=25.3

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999986

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.05  E-value=2e-06  Score=63.96  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ..+.+++||+|++|+|.|.++..|..|+++|+
T Consensus         6 ~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   37 (66)
T 2epp_A            6 SGLREAGILPCGLCGKVFTDANRLRQHEAQHG   37 (66)
T ss_dssp             CSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             CCCCCccCcCCCCCCCccCCHHHHHhhhhhhC
Confidence            35788999999999999999999999999998

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.05  E-value=1.9e-06  Score=51.89  Aligned_cols=26  Identities=38%  Similarity=0.685  Sum_probs=24.9

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|.|++||+.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHE   26 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGG
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhc
Confidence            58999999999999999999999997

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.03  E-value=2.5e-06  Score=51.28  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=24.8

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhc
Confidence            47999999999999999999999998

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.26  E-value=7.6e-07  Score=52.52  Aligned_cols=26  Identities=35%  Similarity=0.742  Sum_probs=23.9

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +||+|++||+.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            57999999999999999999999884

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.00  E-value=2.5e-06  Score=55.47  Aligned_cols=27  Identities=33%  Similarity=0.720  Sum_probs=25.1

Q ss_pred             ccCCCCceecccccccccChHHHHHHH
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHR   83 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~   83 (432)
                      .+.+++||+|++|||+|.++.+|.+|+
T Consensus         2 ~~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            2 SLLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CSSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCCccCeECCCCCCccCCHhHccCcC
Confidence            367899999999999999999999998

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.00  E-value=4.6e-06  Score=53.85  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=27.8

Q ss_pred             CCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCCcc
Q 014041          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEKKW  140 (432)
Q Consensus       101 ~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~  140 (432)
                      ++++|.|.+  |       ++.|.....|..|+++|++++||
T Consensus         3 ~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            3 DDKPFLCTAPGC-------GQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TCCCEECCCTTT-------CCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCcceECCCCCC-------CcccCCHHHHHHHHHHhCCCCCC
Confidence            678888884  7       88888888888888888888876

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=5.5e-06  Score=54.50  Aligned_cols=31  Identities=13%  Similarity=0.174  Sum_probs=24.4

Q ss_pred             cCCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          100 VRKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       100 ~~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      .+++||+|++  |       ++.|..+..|+.|+++|+++
T Consensus         5 ~gekp~~C~~~~C-------~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            5 SSGILLKCPTDGC-------DYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SCCCCEECSSSSC-------CCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCC
Confidence            3678888875  6       88888888888888888775

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.98  E-value=3.4e-06  Score=50.94  Aligned_cols=26  Identities=19%  Similarity=0.476  Sum_probs=24.8

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|++||+.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHc
Confidence            47999999999999999999999998

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.96  E-value=3e-06  Score=50.80  Aligned_cols=26  Identities=35%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|++|++.|.....|..|+++|+
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHS   26 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhc
Confidence            57999999999999999999999997

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.93  E-value=3.3e-06  Score=50.55  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=24.7

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~   26 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHI   26 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHH
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhc
Confidence            57999999999999999999999997

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=52.77  Aligned_cols=26  Identities=31%  Similarity=0.636  Sum_probs=24.7

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|++||+.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            57999999999999999999999997

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.16  E-value=1.3e-06  Score=52.97  Aligned_cols=27  Identities=30%  Similarity=0.573  Sum_probs=25.3

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|+|++||+.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            468999999999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=8.2e-06  Score=51.80  Aligned_cols=31  Identities=32%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            6 SGKPYKCPQC-------SYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CCCSEECSSS-------SCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCC-------CcccCCHHHHHHHHHHccCCC
Confidence            6677777777       777777777777777777654

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.92  E-value=5.4e-06  Score=51.23  Aligned_cols=27  Identities=30%  Similarity=0.786  Sum_probs=25.5

Q ss_pred             CCceecc--cccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +++|.|+  .||+.|.....|..|+++|+
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~   29 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHcc
Confidence            4789999  89999999999999999998

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=8.1e-06  Score=51.97  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=22.5

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|++|       ++.|.....|..|+++|+++|
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            6 SGKPFKCSLC-------EYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             CCCSEECSSS-------SCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCccCCCC-------CchhCCHHHHHHHHHHhccCC
Confidence            6677777777       777777777777777776653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=4.5e-06  Score=53.56  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=21.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCH-HHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDL-TGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~-~~L~~H~~~H~gek  138 (432)
                      ++++|.|++|       ++.|... ..|..|+++|++++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            6 SGRAMKCPYC-------DFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             CCCCEECSSS-------SCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCeECCCC-------ChhhccCHHHHHHHHHhcCCCC
Confidence            6667777777       7777776 77777777776653

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=7.6e-06  Score=52.11  Aligned_cols=31  Identities=13%  Similarity=0.133  Sum_probs=21.2

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|.+|       ++.|.....|..|+++|+++|
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            6 SGLLYDCHIC-------ERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CCCCEECSSS-------CCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCeECCCC-------CCccCCHHHHHHHHHHhcCCC
Confidence            5667777776       777777777777777766653

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.90  E-value=1.6e-06  Score=54.06  Aligned_cols=30  Identities=17%  Similarity=0.339  Sum_probs=17.0

Q ss_pred             CcccccccccccCChHHhhhhhcc-cCCcce
Q 014041          138 KKWKCEKCSKKYAVQSDWKAHSKI-CGTREY  167 (432)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~  167 (432)
                      +||+|++|++.|...+.|..|+++ ++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            355566666666666666666555 455544

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.88  E-value=5.8e-06  Score=50.76  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.6

Q ss_pred             Cceecc--cccccccChHHHHHHHHhcC
Q 014041           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +||+|+  +||+.|.....|..|+++|+
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhc
Confidence            579998  99999999999999999998

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.88  E-value=5.4e-06  Score=48.93  Aligned_cols=25  Identities=28%  Similarity=0.743  Sum_probs=23.2

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+|++||+.|.....|..|+++|+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~   25 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHK   25 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcC
Confidence            5899999999999999999999997

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.86  E-value=1.3e-05  Score=50.89  Aligned_cols=31  Identities=13%  Similarity=0.165  Sum_probs=22.3

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|++|       ++.|.....|..|+++|++++
T Consensus         6 ~~~~~~C~~C-------~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            6 SGKTHLCDMC-------GKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCSSCBCTTT-------CCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCeecCcC-------CCCcCchHHHHHHHHHhcCCC
Confidence            6677777777       777777777777777777654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=1.4e-05  Score=50.82  Aligned_cols=31  Identities=16%  Similarity=0.323  Sum_probs=24.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|++|       ++.|.....|..|+++|+++|
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            6 SGKIFTCEYC-------NKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             CCCCEECTTT-------CCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCEECCCC-------CceeCCHHHHHHHHHHhCCCC
Confidence            6677888877       888888888888888877764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=7.5e-06  Score=52.72  Aligned_cols=30  Identities=13%  Similarity=0.275  Sum_probs=20.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHH-HhhhcCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKH-FSRKHGE  137 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H-~~~H~ge  137 (432)
                      +++||.|+.|       ++.|.....|..| ++.|+++
T Consensus         6 ~~k~~~C~~C-------~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            6 SGHLYYCSQC-------HYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSCEEECSSS-------SCEEECHHHHHHHHHHHTCCC
T ss_pred             CCcCeECCCC-------CcccCCHHHHHHHHHHHccCc
Confidence            6666777666       6777777777777 6666553

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.77  E-value=9.4e-06  Score=49.09  Aligned_cols=26  Identities=31%  Similarity=0.742  Sum_probs=24.2

Q ss_pred             CceecccccccccChHHHHHH-HHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLH-RRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H-~r~H~   87 (432)
                      ++|.|++||+.|.....|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            479999999999999999999 78887

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.75  E-value=2.2e-05  Score=47.18  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=22.6

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++|.|.+|       ++.|.....|..|+++|++++
T Consensus         2 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            2 KPYQCDYC-------GRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCEECTTT-------CCEESCHHHHHHHHHTTCCCC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHHhccCC
Confidence            57888887       888888888888888887764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.73  E-value=2.5e-05  Score=50.20  Aligned_cols=31  Identities=26%  Similarity=0.516  Sum_probs=24.4

Q ss_pred             CCcceeCCC--CCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPE--KSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~--C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|.+  |       ++.|.....|..|+++|+++|
T Consensus         5 ~~k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            5 KKKQHICHIQGC-------GKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SCCCEECCSTTC-------CCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCC-------CCccCCHHHHHHHHHhcCCCC
Confidence            677888874  7       888888888888888887764

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.71  E-value=2.8e-05  Score=46.41  Aligned_cols=29  Identities=24%  Similarity=0.584  Sum_probs=22.3

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTT-------CCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCC-------CcccCCHHHHHHHHHHhcCCC
Confidence            46778887       888888888888888887764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.70  E-value=3.5e-05  Score=56.79  Aligned_cols=50  Identities=12%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             CCCCCCCCccCCHHHHHHHHh-hhcCCC------ccccc--ccccccCChHHhhhhhcc
Q 014041          112 CVHHDPSRALGDLTGIKKHFS-RKHGEK------KWKCE--KCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       112 c~~~~c~k~f~~~~~L~~H~~-~H~gek------p~~C~--~C~k~F~~~~~L~~H~~~  161 (432)
                      |.|.+|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|+++
T Consensus         4 C~W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             EeeCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            455666999999999999984 687765      56664  566666666666666664

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.70  E-value=2.1e-05  Score=54.01  Aligned_cols=30  Identities=23%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-hhcCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGE  137 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H~ge  137 (432)
                      ++++|.|.+|       ++.|.....|..|++ +|+++
T Consensus         4 ~~kp~~C~~C-------~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            4 RDKPYACDIC-------GKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             TTSCEECTTT-------CCEESSHHHHHHHHHHSSCC-
T ss_pred             CCcCEECCCc-------CcccCCHHHHHHHhhhhcCCC
Confidence            5566666666       666666666666666 56554

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.69  E-value=2.1e-05  Score=47.02  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=21.7

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++|.|+.|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPEC-------PKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSS-------SCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCC-------CchhCCHHHHHHHHHHhcCCC
Confidence            46777777       777877777888877777654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.68  E-value=2.9e-05  Score=46.28  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C-------~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCREC-------GKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTT-------SCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCC-------CCccCChhHHHHHHHHhcCCC
Confidence            46888888       888888888888888888764

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.67  E-value=1.9e-05  Score=47.16  Aligned_cols=26  Identities=23%  Similarity=0.668  Sum_probs=24.5

Q ss_pred             Cceecc--cccccccChHHHHHHHHhcC
Q 014041           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+|+  +||+.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            479999  99999999999999999986

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.66  E-value=6e-06  Score=56.43  Aligned_cols=31  Identities=13%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             CCcceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++++|.|+  .|       ++.|.....|..|+++|+++|
T Consensus        15 ~~k~~~C~~~~C-------~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           15 PDKTFECLFPGC-------TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTC-------CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            66677774  45       777777777777777776653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.65  E-value=4.9e-05  Score=56.37  Aligned_cols=40  Identities=8%  Similarity=0.086  Sum_probs=31.3

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccccccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK  147 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k  147 (432)
                      .+++||.|.+|       ++.|..+..|..|+++|++++ +.|.+|+.
T Consensus         9 ~~ekpy~C~~C-------gK~F~~~s~L~~H~r~Htg~~-~~~~~~~~   48 (66)
T 2epp_A            9 REAGILPCGLC-------GKVFTDANRLRQHEAQHGVTS-LQLGYIDL   48 (66)
T ss_dssp             CCCCCCCCTTT-------CCCCSCHHHHHHHHHHHTTTS-CCCCSCCC
T ss_pred             CCccCcCCCCC-------CCccCCHHHHHhhhhhhCCCc-cccccccC
Confidence            47788999988       899999999999999988864 44555543

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.63  E-value=3.6e-05  Score=47.04  Aligned_cols=29  Identities=17%  Similarity=0.435  Sum_probs=21.3

Q ss_pred             cceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      +||.|+  .|       ++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYC-------GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-------CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCC-------CcccCCHhHHHHHHHHhcCCC
Confidence            467776  66       788888888888887777764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.63  E-value=3.1e-05  Score=46.46  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      ++|.|++|       ++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYC-------EFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSS-------SCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCC-------CCccCCHHHHHHHHHHHccCCC
Confidence            35777777       7777777777777777776653

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.62  E-value=3.8e-05  Score=47.23  Aligned_cols=29  Identities=14%  Similarity=0.263  Sum_probs=20.0

Q ss_pred             cceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICP--EKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++|.|.  .|       ++.|.....|..|+++|++++
T Consensus         2 k~~~C~~~~C-------~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            2 RPYSCDHPGC-------DKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CSBCCCCTTC-------CCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCcCcCCCC-------CCccCCHHHHHHHHHHccCCC
Confidence            567776  56       777777777777777776653

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.60  E-value=3.2e-05  Score=46.00  Aligned_cols=29  Identities=17%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      ++|.|++|       ++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C-------~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHC-------DKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSC-------CCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCC-------CcccCCHHHHHHHHHHhccCC
Confidence            46777777       778887888888887777664

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.50  E-value=6.1e-05  Score=44.64  Aligned_cols=26  Identities=12%  Similarity=0.317  Sum_probs=16.6

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      ++|.|++|       ++.|.....|..|+++|+
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVC-------GKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSS-------CCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCC-------CcccCCHHHHHHHHHhcC
Confidence            45666666       666666666666666654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.62  E-value=1.5e-05  Score=47.82  Aligned_cols=27  Identities=19%  Similarity=0.334  Sum_probs=16.8

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      +|.|++|       ++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMC-------GKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5666666       66666666666666666554

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.58  E-value=1.8e-05  Score=47.67  Aligned_cols=28  Identities=29%  Similarity=0.581  Sum_probs=16.2

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      ++|.|+.|       ++.|.....|..|+++|+++
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHC-------QRQFADPGALQRHVRIHTGE   29 (30)
Confidence            45556555       56666666666666555554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.44  E-value=8.1e-05  Score=43.80  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=15.9

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      ++|.|+.|       ++.|.....|..|+++|
T Consensus         2 k~~~C~~C-------~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLC-------PQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSS-------SCEESSHHHHHHHHHHC
T ss_pred             cCccCCCc-------ChhhCCHHHHHHHHHHc
Confidence            45666666       66666666666666655

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.38  E-value=9.1e-05  Score=43.36  Aligned_cols=26  Identities=15%  Similarity=0.334  Sum_probs=15.3

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      +|.|.+|       ++.|.....|..|+++|++
T Consensus         1 ~~~C~~C-------~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLC-------ERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSS-------CCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCC-------CCcCCCHHHHHHHHHHcCC
Confidence            3556665       6666666666666666654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.36  E-value=6.9e-05  Score=44.29  Aligned_cols=23  Identities=17%  Similarity=0.486  Sum_probs=10.8

Q ss_pred             CcccccccccccCChHHhhhhhc
Q 014041          138 KKWKCEKCSKKYAVQSDWKAHSK  160 (432)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~  160 (432)
                      +||+|++|++.|.....|..|++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH
Confidence            34444444444444444444444

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.33  E-value=8.8e-05  Score=44.56  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=16.0

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHH-HhhhcCC
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKH-FSRKHGE  137 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H-~~~H~ge  137 (432)
                      +|.|+.|       ++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C-------~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLC-------NRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTT-------CCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCccc-------CcccCChHHHHHHHHHHccCC
Confidence            4566665       6666666666666 4555554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00043  Score=50.86  Aligned_cols=57  Identities=19%  Similarity=0.219  Sum_probs=42.3

Q ss_pred             ccccccccChHHHHHHH-HhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041           67 EICNKGFQRDQNLQLHR-RGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus        67 ~~Cgk~F~~~~~L~~H~-r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      ..|++.|.+...|..|+ +.|.+...       .....+|.|.+=+|     ++.+.....|..|++..+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~-------~~~~~~~~C~W~~C-----~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDF-------KHPMEPLACNWEDC-----DFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCC-------CCSSCCEECCCSSC-----CCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCccc-------CCCCCCCEeeCCCC-----cCCCCChHHHHhhccccC
Confidence            56999999999999998 57762210       00123788875544     999999999999999854

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.13  E-value=8.5e-05  Score=43.25  Aligned_cols=23  Identities=26%  Similarity=0.692  Sum_probs=12.3

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ||+|++|++.|.....|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            45555555555555555555543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.96  E-value=0.0004  Score=41.07  Aligned_cols=25  Identities=24%  Similarity=0.529  Sum_probs=16.2

Q ss_pred             ceeCC--CCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          104 VYICP--EKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       104 ~y~C~--~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      +|.|.  .|       ++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C-------~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENC-------GRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTT-------CEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcC-------cCccCCHHHHHHHHHHhC
Confidence            56666  55       666666666666666664

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.67  E-value=0.0003  Score=59.13  Aligned_cols=83  Identities=12%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             CceecccccccccChHHHHHHH--HhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCc
Q 014041           62 NRFLCEICNKGFQRDQNLQLHR--RGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKK  139 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~--r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp  139 (432)
                      +++.|.+|+..|.+...+..|.  +.|..            ..+.|.+. ++....-.++.|....    +...+.+.+.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~------------~v~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~   93 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHAN------------KVRRYMAI-NQGEDSVPAKKFKAAP----AEISDGEDRS   93 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHH------------HHHHHHHH-TTCCCCCSCCCCSCCS----SCCSSCCCTT
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHH------------HHHHHhcc-cCcccCCCCCccCCCc----cccccCCCCC
Confidence            5689999999999999999998  66751            11222221 1000000022222111    1123445667


Q ss_pred             ccccccccccCChHHhhhhhcc
Q 014041          140 WKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       140 ~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      |-|..|+++|.....|..|+..
T Consensus        94 ~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           94 KCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TEETTTTEECSSHHHHHHHHTS
T ss_pred             eEcCCCCCEeCCHHHHHHHHCC
Confidence            7788888888887777777664

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=96.07  E-value=0.0012  Score=54.95  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .-..|+++++|.|.+|+|.|.+...|..|+++..
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            3456889999999999999999999999986653

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.66  E-value=0.0027  Score=52.75  Aligned_cols=30  Identities=17%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             hhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       132 ~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ..|+|+++|.|..|+|.|.+...|..|+++
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            346788888888888888888888888886

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.27  E-value=0.0044  Score=51.91  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=53.2

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHH--hhhcCC-Cccccccc------ccccCChHHhhhhhcc-cCCcceeec-
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHF--SRKHGE-KKWKCEKC------SKKYAVQSDWKAHSKI-CGTREYRCD-  170 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~--~~H~ge-kp~~C~~C------~k~F~~~~~L~~H~~~-~~~k~~~C~-  170 (432)
                      .+++.|.+|       ...|.+...+..|+  +.|... +.|.+..+      ++.|...    .+... .+.+.|.|+ 
T Consensus        30 ~~~~~C~~C-------~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVC-------SAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAA----PAEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTT-------TEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCC----SSCCSSCCCTTTEETT
T ss_pred             CCCCcCcCC-------CCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCC----ccccccCCCCCeEcCC
Confidence            467999999       99999999999999  566542 44554211      2223221    12333 567889999 


Q ss_pred             CCCccCCchHHHHHHH
Q 014041          171 CGTLFSRKDSFITHRA  186 (432)
Q Consensus       171 C~~~F~~~~~L~~H~~  186 (432)
                      |.+.|.+...|..|..
T Consensus        99 C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           99 CNMTFSSPVVAESHYI  114 (127)
T ss_dssp             TTEECSSHHHHHHHHT
T ss_pred             CCCEeCCHHHHHHHHC
Confidence            9999999999999975

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.24  E-value=0.0089  Score=52.40  Aligned_cols=81  Identities=19%  Similarity=0.455  Sum_probs=52.7

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCcceeec-CCCccCCchH
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTREYRCD-CGTLFSRKDS  180 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k~~~C~-C~~~F~~~~~  180 (432)
                      ....|+.-+|     +..+ ....|..|... =..++..|+.|+..+ .+..|..|+.. ...++-.|. |+..|.. ..
T Consensus        81 l~v~C~n~GC-----~~~~-~~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~  151 (170)
T 3hcs_A           81 LMVKCPNEGC-----LHKM-ELRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-ED  151 (170)
T ss_dssp             SEEECCSTTC-----CCEE-EGGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GG
T ss_pred             cccCCCCCCC-----Ccee-cHhHHHHHHhc-CCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HH
Confidence            3456653333     5554 35567777632 234667888888877 56678888865 788888888 8887754 45


Q ss_pred             HHHHHHHhcccc
Q 014041          181 FITHRAFCDALA  192 (432)
Q Consensus       181 L~~H~~~h~~~~  192 (432)
                      |..|...+.+..
T Consensus       152 l~~H~~~~~~~~  163 (170)
T 3hcs_A          152 KEIHDQNCPLAL  163 (170)
T ss_dssp             HHHHHTTCCC--
T ss_pred             HHhHHHhCcChh
Confidence            678887775543

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.81  E-value=0.013  Score=39.51  Aligned_cols=23  Identities=17%  Similarity=0.518  Sum_probs=12.6

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +|.|+.|++.|...+.|++||+.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhhh
Confidence            45555555555555555555554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.53  E-value=0.017  Score=50.62  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=21.7

Q ss_pred             CCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhcc-cCCc
Q 014041          118 SRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CGTR  165 (432)
Q Consensus       118 ~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~~k  165 (432)
                      +..+ .+..|..|+...=..++-.|..|+..|.. ..|..|..+ .|+.
T Consensus       117 ~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H~~~~~~~~  163 (170)
T 3hcs_A          117 QRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPLAL  163 (170)
T ss_dssp             CCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHHHTTCCC--
T ss_pred             ChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhHHHhCcChh
Confidence            4444 34445555554444555555555554432 344555555 4443

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.46  E-value=0.018  Score=38.87  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .+|.|+-|++.|.....|+.||+.--
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            67999999999999999999998543

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=88.10  E-value=0.065  Score=40.34  Aligned_cols=42  Identities=21%  Similarity=0.235  Sum_probs=29.5

Q ss_pred             CcCCCCCCCCCCChhhhhcCcccc------C---------CCCceecccccccccCh
Q 014041           35 KRKRNLPGTPDPDAEVIALSPKSL------M---------ATNRFLCEICNKGFQRD   76 (432)
Q Consensus        35 k~~c~~cg~~~~~~~~l~~h~~~h------~---------~~k~f~C~~Cgk~F~~~   76 (432)
                      --+|++||.+....+.+..-...-      .         .+-.|+|+.||..|--+
T Consensus         8 ~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A            8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred             cccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence            357999999988777776654321      1         12369999999998643

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=87.99  E-value=0.28  Score=30.84  Aligned_cols=25  Identities=24%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .|.|++|-+.|.....|..|....+
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            4999999999999999999954433

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=86.38  E-value=0.45  Score=30.11  Aligned_cols=28  Identities=14%  Similarity=0.281  Sum_probs=23.8

Q ss_pred             CCCceecccccccccChHHHHHHHHhcC
Q 014041           60 ATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        60 ~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ....+.|+.|+.+|.....+..|++-.-
T Consensus         5 ~~~~~~C~~C~IsF~~l~ty~aHKk~YC   32 (36)
T 1fu9_A            5 EVMKKYCSTCDISFNYVKTYLAHKQFYC   32 (36)
T ss_dssp             CCCCSEETTTTEECSSHHHHHHHHHHTS
T ss_pred             ccCcCeeccccceehhhHHHhhhheecC
Confidence            3467999999999999999999987543

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=82.94  E-value=1.1  Score=28.08  Aligned_cols=26  Identities=31%  Similarity=0.681  Sum_probs=22.3

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      .|.|++|       .+.|.+...|..|....|.
T Consensus         5 GFiCP~C-------~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            5 GFICPQC-------MKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EEECTTT-------CCEESSHHHHHHHHHHHTS
T ss_pred             ccCCcHH-------HHHcCCHHHHHHHHHhccc
Confidence            4999999       9999999999999987443

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=82.62  E-value=0.47  Score=31.84  Aligned_cols=31  Identities=13%  Similarity=0.088  Sum_probs=20.3

Q ss_pred             CCcCCCCCCCCCCChhhhhcCccccCCCCceeccccccc
Q 014041           34 LKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKG   72 (432)
Q Consensus        34 ~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~   72 (432)
                      ..|+|-.||+.|...+.-.     .   .-.+|++||..
T Consensus         2 ~iY~C~rCg~~fs~~el~~-----l---P~IrCpyCGyr   32 (48)
T 4ayb_P            2 AVYRCGKCWKTFTDEQLKV-----L---PGVRCPYCGYK   32 (48)
T ss_dssp             ---CCCCTTTTCCCCCSCC-----C---SSSCCTTTCCS
T ss_pred             cEEEeeccCCCccHHHHhh-----C---CCcccCccCcE
Confidence            4699999999999865321     1   12689999954

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=80.27  E-value=1  Score=34.64  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=20.3

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ..-..|-+|||.|+   .|++|++.|+
T Consensus        19 ~d~iiClecGK~fK---~LkRHL~~~h   42 (87)
T 2jsp_A           19 DDHIVCLECGGSFK---SLKRHLTTHH   42 (87)
T ss_dssp             SSCEECTBTCCEES---BHHHHHHHTT
T ss_pred             CCceEecccchhhH---HHHHHHHHcc
Confidence            34589999999998   5889999976

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=80.22  E-value=0.98  Score=27.67  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=21.1

Q ss_pred             eecccccccccChHHHHHHHHhcC
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      --|.+|.|.|....+|..|+|.-+
T Consensus        10 qhcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           10 QHCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             CEETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            469999999999999999988655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	432
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	0.002

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 137 EKKWKCEKCSKKYAVQSDWKAHSKICGTREYRC--DCGTLFSRKDSFITHR 185
           +K + C+ C K +  +S    H  +           CG  F  K   + H 
Sbjct: 1   DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	432
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.49
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.46
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.07
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.01
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.0
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.99
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.96
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.94
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.88
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.87
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.86
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.86
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.79
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.78
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.76
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.74
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.73
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.73
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.71
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.7
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.61
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.6
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.52
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.52
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.47
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.45
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.43
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.43
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.38
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.34
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.33
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.31
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.31
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.31
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.3
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.26
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.12
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.09
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.0
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.96
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.91
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.88
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.8
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.46
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.36
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.3
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.3
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.24
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.21
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.12
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.08
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.05
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.89
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.88
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.86
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.85
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.85
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.82
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.8
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.71
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.58
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.51
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.51
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.48
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.47
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.41
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.25
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.24
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.22
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.21
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.14
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.07
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.96
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.83
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.78
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.55
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	95.53
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.38
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.36
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.31
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.06
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.98
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	94.52
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.25
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.78
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.74
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.71
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	93.54
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.86
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	92.37
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.26
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.16
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.07
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.94
d1y0jb1	36	U-shaped transcription factor, different fingers {	89.54
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	89.22
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	88.44
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	87.2
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.59
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.5
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	84.64
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	83.56
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	83.23
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	82.7
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	82.37
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	82.29
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	82.08
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	81.75
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	81.67
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	81.01
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.18

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.7e-15  Score=103.09  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=34.9

Q ss_pred             CCceecccccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      ||||+|+ |||.|..+..|..|+++|+             +++||.|++|       ++.|.....|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht-------------~ekpy~C~~C-------~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVC-------GKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHS-------------CCCSEECTTT-------SCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccc-------------cccCCcCCCc-------CCEecCHHHHHHHHhcC
Confidence            4566663 6666666666666666666             6666666666       66666666666666655

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.9e-14  Score=101.54  Aligned_cols=53  Identities=25%  Similarity=0.526  Sum_probs=45.9

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccccCChHHhhhhhccc
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKIC  162 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~  162 (432)
                      +|+|.|+ |       |+.|..+..|..|+++|+|++||+|++|++.|.....|..|+++|
T Consensus         1 EK~y~C~-C-------gk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-C-------GKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-T-------SCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-C-------CCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5788994 8       899999999999999999999999999999999999998888763

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.1e-11  Score=79.10  Aligned_cols=37  Identities=27%  Similarity=0.631  Sum_probs=33.8

Q ss_pred             CCCceecccccccccChHHHHHHHH-hcCCCcccccccccccCCcceeCCC
Q 014041           60 ATNRFLCEICNKGFQRDQNLQLHRR-GHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        60 ~~k~f~C~~Cgk~F~~~~~L~~H~r-~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      .+|||+|++|||.|....+|.+|++ +|+             ++|||.|++
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht-------------~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHT-------------SERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSC-------------CCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccC-------------CCcCcCCcC
Confidence            4799999999999999999999976 698             999999974

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.6e-11  Score=78.62  Aligned_cols=35  Identities=31%  Similarity=0.584  Sum_probs=34.1

Q ss_pred             cCccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           53 LSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        53 ~h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .|.++|+++|||+|++|||+|....+|..|+|+|+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~Ht   36 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT   36 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCC
Confidence            68999999999999999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=7.1e-11  Score=76.02  Aligned_cols=34  Identities=32%  Similarity=0.690  Sum_probs=32.9

Q ss_pred             CccccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           54 SPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        54 h~~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |.++|+++|||+|++|+|.|.++.+|..|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            7899999999999999999999999999999996

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=9.1e-11  Score=73.12  Aligned_cols=31  Identities=29%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             ccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           57 SLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        57 ~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+++|||+|.+|||+|.....|..|+|+|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5899999999999999999999999999998

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-10  Score=74.42  Aligned_cols=32  Identities=22%  Similarity=0.549  Sum_probs=31.1

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+++|||+|++|||+|..+..|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            58999999999999999999999999999998

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-10  Score=74.47  Aligned_cols=37  Identities=22%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHh-hhcCCCcccccc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFS-RKHGEKKWKCEK  144 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~-~H~gekp~~C~~  144 (432)
                      .+|||+|.+|       ++.|...+.|+.|++ +|+|||||+|++
T Consensus         2 ~~Kpy~C~~C-------gk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSC-------GKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSS-------CCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCC-------CCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4689999999       999999999999986 699999999974

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=1.8e-10  Score=72.76  Aligned_cols=30  Identities=27%  Similarity=0.523  Sum_probs=29.3

Q ss_pred             cCCCCceecccccccccChHHHHHHHHhcC
Q 014041           58 LMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        58 h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+++|||+|++|+|.|.++.+|++|+|+|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            789999999999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.7e-10  Score=74.21  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=24.2

Q ss_pred             HHhhhcCCCcccccccccccCChHHhhhhhccc
Q 014041          130 HFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKIC  162 (432)
Q Consensus       130 H~~~H~gekp~~C~~C~k~F~~~~~L~~H~~~~  162 (432)
                      |.|+|+|||||+|++|++.|..+++|..|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            456777777777777777777777777777663

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.1e-10  Score=71.75  Aligned_cols=32  Identities=16%  Similarity=0.474  Sum_probs=29.4

Q ss_pred             cccCCCCceecccccccccChHHHHHHHHhcC
Q 014041           56 KSLMATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        56 ~~h~~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++|+++|||+|++|+|.|.++.+|+.|++.++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H   32 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKH   32 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccccc
Confidence            58999999999999999999999999976655

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=3.5e-10  Score=67.62  Aligned_cols=27  Identities=37%  Similarity=0.796  Sum_probs=26.1

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ||||+|++|+|.|.++.+|.+|+|+|+
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            689999999999999999999999997

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3e-10  Score=72.54  Aligned_cols=30  Identities=27%  Similarity=0.532  Sum_probs=21.7

Q ss_pred             hhhcCCCcccccccccccCChHHhhhhhcc
Q 014041          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       132 ~~H~gekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      |+|+|||||+|.+|++.|..++.|..|+++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~   30 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKR   30 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcc
Confidence            457777777777777777777777777776

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.1e-10  Score=70.96  Aligned_cols=32  Identities=22%  Similarity=0.444  Sum_probs=22.5

Q ss_pred             hhhcCCCcccccccccccCChHHhhhhhcc-cC
Q 014041          132 SRKHGEKKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       132 ~~H~gekp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (432)
                      |+|+|||||+|++|++.|..+++|++|++. |+
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            457777777777777777777777777655 54

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.78  E-value=1.2e-09  Score=66.02  Aligned_cols=26  Identities=38%  Similarity=0.982  Sum_probs=25.4

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|++|||.|.+...|++|+|+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HT   26 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHT   26 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTT
T ss_pred             CcCCCCCCCCCCCCchHcccccCccc
Confidence            68999999999999999999999999

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7.6e-10  Score=71.54  Aligned_cols=30  Identities=23%  Similarity=0.519  Sum_probs=18.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      ++|||.|++|       +|.|...+.|..|+++|+||
T Consensus         9 ~ekpy~C~~C-------gK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           9 ERRRYKCDEC-------GKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCSSBCSSS-------CCBCSCHHHHHHHHTTTCCS
T ss_pred             CCCCEecCCC-------CceeeCHHHHHHhCccCCCC
Confidence            5566666665       66666666666666666554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.5e-09  Score=63.28  Aligned_cols=26  Identities=31%  Similarity=0.632  Sum_probs=24.8

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|.+|||.|.....|.+|+|+|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            69999999999999999999999984

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.3e-09  Score=67.33  Aligned_cols=35  Identities=23%  Similarity=0.636  Sum_probs=30.7

Q ss_pred             eeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccc
Q 014041          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEK  144 (432)
Q Consensus       105 y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~  144 (432)
                      |.|++-+|     ++.|.++..|++|+++|+|||||+|+.
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67776444     999999999999999999999999973

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2e-09  Score=64.91  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=25.3

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||.|++|||.|.++.+|.+|+|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Ht   26 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQ   26 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGG
T ss_pred             CCEECCcCCCeecchHHhhhhcCccC
Confidence            68999999999999999999999998

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.3e-09  Score=68.06  Aligned_cols=33  Identities=33%  Similarity=0.678  Sum_probs=31.0

Q ss_pred             eeccc--ccccccChHHHHHHHHhcCCCcccccccccccCCcceeCCC
Q 014041           64 FLCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYICPE  109 (432)
Q Consensus        64 f~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  109 (432)
                      |.|++  |||+|.++.+|++|+++|+             ++|||.|++
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Ht-------------gekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHS-------------DTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHH-------------TSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeC-------------CCCCEeCCC
Confidence            88987  9999999999999999999             999999974

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=1.7e-09  Score=73.14  Aligned_cols=38  Identities=32%  Similarity=0.474  Sum_probs=35.0

Q ss_pred             hhhhcCccccCCCCceeccc--ccccccChHHHHHHHHhcC
Q 014041           49 EVIALSPKSLMATNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        49 ~~l~~h~~~h~~~k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +.|..|++ |++++||+|++  |+|.|.+..+|..|+++|+
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Ht   44 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHL   44 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHT
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhccccc
Confidence            46777885 99999999988  9999999999999999999

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.61  E-value=1.1e-08  Score=61.60  Aligned_cols=29  Identities=24%  Similarity=0.584  Sum_probs=23.7

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      |||.|++|       ++.|...+.|++|+++|+|||
T Consensus         1 kp~~C~~C-------~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVC-------TRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTT-------CCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCC-------CCCCCCchHcccccCcccCCC
Confidence            57888888       888888888888888888875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-08  Score=62.94  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=19.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      ++|||.|.+|       ++.|..++.|..|+++|+||
T Consensus         4 gekpy~C~~C-------gk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           4 GEKPYGCVEC-------GKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TCCCEECSSS-------CCEESSHHHHHHHHHGGGCS
T ss_pred             CCCCeeCCCC-------CCEeCchHHhHhhccccCCC
Confidence            5666666666       66666666666666666654

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=2.7e-08  Score=59.24  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=22.3

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      +|||+|++|       ++.|..++.|..|+++|+|
T Consensus         1 EKPy~C~~C-------~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRIC-------MRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTT-------CCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCC-------cCEecccccccccCCCccC
Confidence            477888887       8888888888888888875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.5e-08  Score=59.95  Aligned_cols=29  Identities=24%  Similarity=0.489  Sum_probs=23.7

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      |||.|++|       ++.|...+.|..|+++|+|||
T Consensus         1 Kpy~C~~C-------~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPEC-------PKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTT-------TCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcC-------CCeecchHHhhhhcCccCCcC
Confidence            57888888       888888888888888888875

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.47  E-value=6.9e-09  Score=70.04  Aligned_cols=33  Identities=15%  Similarity=0.411  Sum_probs=24.8

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      +++||.|++-+|     ++.|..++.|+.|+++|+|||
T Consensus        15 gekpy~C~~~~C-----~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          15 PDKTFECLFPGC-----TKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTC-----CCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCcCCC-----CccccCchHHHhhcccccCCC
Confidence            778888877222     888888888888888888775

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.9e-08  Score=59.47  Aligned_cols=26  Identities=35%  Similarity=0.726  Sum_probs=25.1

Q ss_pred             Cceeccc--ccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|++  |||.|.+..+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTT
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCc
Confidence            6899998  9999999999999999998

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.5e-08  Score=59.79  Aligned_cols=26  Identities=42%  Similarity=0.738  Sum_probs=24.9

Q ss_pred             Cceeccc--ccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|++  |||+|.+..+|++|+|+|+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HT   28 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT   28 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCceECcHHHcCccccccC
Confidence            6899988  9999999999999999998

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=7.7e-08  Score=60.39  Aligned_cols=29  Identities=14%  Similarity=0.277  Sum_probs=15.9

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      ++|||.|++|       ++.|..+..|++|+++|++
T Consensus         4 GekPy~C~~C-------~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           4 GKRPFVCRIC-------LSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CCSCEECSSS-------CCEESSHHHHHHHHGGGTS
T ss_pred             CCccccCCCC-------CCcccChHHHHHHccccCC
Confidence            5555555555       5555555555555555544

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1e-07  Score=58.10  Aligned_cols=31  Identities=19%  Similarity=0.524  Sum_probs=25.8

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      |||.|++-+|     ++.|...++|++|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            5788876444     999999999999999999886

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=9.5e-08  Score=58.62  Aligned_cols=27  Identities=30%  Similarity=0.815  Sum_probs=25.8

Q ss_pred             CCceeccc--ccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+||.|++  |||+|.+..+|++|+++|+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            68999988  9999999999999999997

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.6e-07  Score=56.77  Aligned_cols=30  Identities=17%  Similarity=0.437  Sum_probs=25.9

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      |||+|++-+|     +++|.+.+.|++|+|+|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGC-----GKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTC-----CCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCC-----CceECcHHHcCccccccCCC
Confidence            6899988444     99999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=7e-08  Score=57.19  Aligned_cols=26  Identities=35%  Similarity=0.740  Sum_probs=24.4

Q ss_pred             Cceeccc--ccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|++  |||+|.+..+|++|+|+|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999995

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-07  Score=56.41  Aligned_cols=30  Identities=27%  Similarity=0.557  Sum_probs=24.9

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      |||+|++-+|     ++.|.+.+.|++|+++|+||
T Consensus         1 kp~~C~~~gC-----gk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGC-----RKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTC-----CCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCC-----CceECChhHhhhhcCcCcCC
Confidence            5788888433     99999999999999999886

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.2e-07  Score=57.80  Aligned_cols=26  Identities=42%  Similarity=0.914  Sum_probs=24.4

Q ss_pred             Cceecc--cccccccChHHHHHHHHhcC
Q 014041           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|+  .|||.|.+..+|++|+|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Ht   28 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTS
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccc
Confidence            689995  59999999999999999998

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=9.4e-08  Score=57.23  Aligned_cols=26  Identities=31%  Similarity=0.760  Sum_probs=24.7

Q ss_pred             Cceeccc--ccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEI--CNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~--Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|++  |||+|.+..+|++|+|+|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            6899988  9999999999999999997

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.7e-07  Score=51.86  Aligned_cols=25  Identities=40%  Similarity=0.800  Sum_probs=23.7

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |++|++|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            5799999999999999999999997

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=2.1e-07  Score=53.26  Aligned_cols=27  Identities=30%  Similarity=0.682  Sum_probs=25.6

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++||.|++||+.|.+....++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=6.1e-07  Score=53.60  Aligned_cols=29  Identities=28%  Similarity=0.715  Sum_probs=24.8

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      |||+|++.+|     ++.|.+.+.|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            6889988655     9999999999999999986

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8.3e-07  Score=51.38  Aligned_cols=26  Identities=27%  Similarity=0.432  Sum_probs=18.6

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      |||+|.+|       ||+|...+.|..|.|+|+
T Consensus         1 KPy~C~eC-------gK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLEC-------GKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSS-------CCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCC-------cCeeccCcccccCccCCC
Confidence            56777777       777777777777777764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=2e-06  Score=52.50  Aligned_cols=30  Identities=17%  Similarity=0.420  Sum_probs=20.1

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      +|||.|++-+|     ++.|.+.++|++|+++|+.
T Consensus         1 ErP~~C~~pgC-----~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGC-----DKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTC-----CCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCC-----CCeeCCHHHHHHHhhhccC
Confidence            46677766433     7777777777777777764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2e-06  Score=51.02  Aligned_cols=32  Identities=34%  Similarity=0.621  Sum_probs=29.1

Q ss_pred             CceecccccccccChHHHHHHHHhcCCCcccccccccccCCccee
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYI  106 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  106 (432)
                      +..-|++|||.|.....|.+|...|+             ++|||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs-------------~ekpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccC-------------CCCCCC
Confidence            55789999999999999999999999             888873

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2.8e-06  Score=48.47  Aligned_cols=25  Identities=40%  Similarity=0.852  Sum_probs=12.4

Q ss_pred             CCcccccccccccCChHHhhhhhcc
Q 014041          137 EKKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       137 ekp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ||||.|++||+.|.+.+..++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            3455555555555555555554444

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.1e-06  Score=50.65  Aligned_cols=28  Identities=25%  Similarity=0.683  Sum_probs=21.1

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      |||.|++-+|     +|.|.+.++|++|+++|+
T Consensus         1 rPf~C~~~gC-----~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGC-----NKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTC-----CCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCc-----CCcCCCHHHHHHHHhhcc
Confidence            5777777544     888888888888888775

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=4.4e-06  Score=46.10  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=17.2

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      |.+|++|       ++.|.+++.|+.|+|.|+|
T Consensus         1 phkc~~c-------~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVC-------GKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTT-------TBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchh-------hhHhcchhHHHHHhhccCC
Confidence            3456666       6777777777777776664

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=4.9e-06  Score=48.15  Aligned_cols=27  Identities=26%  Similarity=0.752  Sum_probs=25.9

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|||.|++|+..|+++..+..|.|.|-
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshd   27 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHD   27 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHS
T ss_pred             CCCcccchHHHHhhccccceEeeeccc
Confidence            689999999999999999999999997

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4.8e-05  Score=43.89  Aligned_cols=29  Identities=31%  Similarity=0.737  Sum_probs=24.5

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      |||.|.+.+|     ++.|...+.|.+|++.++|
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhCC
Confidence            5889988877     8999999999999988765

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=3.2e-05  Score=45.75  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=27.1

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCccc
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWK  141 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~  141 (432)
                      .+...|+.|       |+.|....+|.+|...|+|||||.
T Consensus         3 rk~~~ce~c-------gk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           3 RKQVACEIC-------GKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             CCSEEETTT-------TEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             chhhhHHHH-------HHHHHHHHHHHhhhcccCCCCCCC
Confidence            345678888       899999999999988899998873

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=7.8e-05  Score=42.30  Aligned_cols=27  Identities=26%  Similarity=0.395  Sum_probs=24.7

Q ss_pred             eeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       105 y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      |.|++|       +......+-|++|+|.|++++
T Consensus         2 YvC~~C-------g~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEEC-------GIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTT-------CCBCSSHHHHHHHHHHTSSCC
T ss_pred             cccccc-------CcccCCHHHHHHHHHHhcCCC
Confidence            889999       999999999999999999875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.6e-05  Score=42.14  Aligned_cols=25  Identities=28%  Similarity=0.578  Sum_probs=23.5

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      -+.|.+|||.|.....|++|...|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4789999999999999999999998

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.9e-05  Score=42.03  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=23.9

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      ++||+|..|       ..+-.+.+.|..|+|.|+|+
T Consensus         1 erpfkcqlc-------sy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQIC-------PYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSS-------SCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeec-------ccccCCchheEEeeecccCc
Confidence            478888888       78888888888888888874

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=6.1e-05  Score=43.47  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=18.7

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHG  136 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~g  136 (432)
                      +|||.|++|       ...|.+++.+..|.|.|.|
T Consensus         1 ekp~~cpic-------~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVC-------GLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTT-------TEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchH-------HHHhhccccceEeeecccC
Confidence            356666666       6666666666666666655

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0001  Score=41.85  Aligned_cols=25  Identities=28%  Similarity=0.642  Sum_probs=23.9

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|.|+.||..-...+.|+.|+|.|+
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRsHT   25 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRTHT   25 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTS
T ss_pred             CccccccCcccCCHHHHHHHHHHhc
Confidence            4899999999999999999999998

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=8.8e-05  Score=41.02  Aligned_cols=23  Identities=35%  Similarity=0.706  Sum_probs=22.3

Q ss_pred             ecccccccccChHHHHHHHHhcC
Q 014041           65 LCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        65 ~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +|+.|.|.|..+..|+.|-|.|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~ht   24 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHT   24 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHS
T ss_pred             cCcchHHHHHHhHhhhhcccccc
Confidence            69999999999999999999998

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=41.13  Aligned_cols=27  Identities=30%  Similarity=0.642  Sum_probs=25.7

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ++||+|.+|...-...+.|..|+|.|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~ht   27 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHT   27 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCC
T ss_pred             CCcceeeecccccCCchheEEeeeccc
Confidence            589999999999999999999999998

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00014  Score=41.97  Aligned_cols=25  Identities=20%  Similarity=0.510  Sum_probs=17.5

Q ss_pred             cceeec---CCCccCCchHHHHHHHHhc
Q 014041          165 REYRCD---CGTLFSRKDSFITHRAFCD  189 (432)
Q Consensus       165 k~~~C~---C~~~F~~~~~L~~H~~~h~  189 (432)
                      |||.|.   |+++|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            567774   7777777777777777654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00018  Score=40.25  Aligned_cols=26  Identities=23%  Similarity=0.506  Sum_probs=24.9

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |||+|..|...-...+.|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            79999999999999999999999996

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.00027  Score=43.74  Aligned_cols=26  Identities=27%  Similarity=0.608  Sum_probs=24.7

Q ss_pred             CceecccccccccChHHHHHHHHhcC
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +.|+|.+|+|.|.+...|--||+.|.
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CccCCCCCCCccCCcccccchHhhhc
Confidence            56999999999999999999999997

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00035  Score=39.14  Aligned_cols=26  Identities=27%  Similarity=0.478  Sum_probs=21.0

Q ss_pred             eeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       105 y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      ..|.+|       ||+|...+.|++|..+|+||
T Consensus         3 hvc~ec-------gkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAEC-------GKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTT-------CCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHH-------hHHHHHHHHHHHHhhcccCC
Confidence            567777       88888888888888888875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00019  Score=40.66  Aligned_cols=23  Identities=17%  Similarity=0.528  Sum_probs=13.4

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ||.|..|...|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            45555566666666666655554

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.00047  Score=38.03  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=22.5

Q ss_pred             eCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          106 ICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       106 ~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      .|+.|       .+.|.++.-|+.|-|.|+|||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            47777       999999999999999999985

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.85  E-value=0.00025  Score=38.58  Aligned_cols=24  Identities=29%  Similarity=0.778  Sum_probs=22.4

Q ss_pred             eecccccccccChHHHHHHHHhcC
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+|..|.++|..++.|.+|+|.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            789999999999999999999984

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00031  Score=43.80  Aligned_cols=26  Identities=23%  Similarity=0.539  Sum_probs=23.6

Q ss_pred             CCCCceecccccccccChHHHHHHHH
Q 014041           59 MATNRFLCEICNKGFQRDQNLQLHRR   84 (432)
Q Consensus        59 ~~~k~f~C~~Cgk~F~~~~~L~~H~r   84 (432)
                      ++.|||+|.+|+|.|--...+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46799999999999999999999964

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00043  Score=39.15  Aligned_cols=27  Identities=33%  Similarity=0.776  Sum_probs=25.2

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +..|.|..|...|+++..|..||-.|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsht   28 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHT   28 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeeccc
Confidence            456999999999999999999999998

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00025  Score=40.33  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=13.7

Q ss_pred             CcccccccccccCChHHhhhhhcc
Q 014041          138 KKWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      +||+|.+|..-.+..++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            355555555555555555555555

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.58  E-value=0.00037  Score=40.47  Aligned_cols=25  Identities=32%  Similarity=0.743  Sum_probs=22.3

Q ss_pred             ceecccccccccChHHHHHH-HHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLH-RRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H-~r~H~   87 (432)
                      ||.|.+|++.|.++.-|.+| .+.|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            79999999999999999999 45564

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00099  Score=37.15  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      |||+|..|       ..+-...+.|++|+|+|.
T Consensus         2 kp~kck~c-------dyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTC-------DYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSS-------CCEESSHHHHHHHHHHSC
T ss_pred             CCcccccc-------cchhcchhhHhhhhhccc
Confidence            67888888       788888888888888874

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.51  E-value=0.00092  Score=37.88  Aligned_cols=30  Identities=27%  Similarity=0.618  Sum_probs=26.3

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      +||.|.+-+|     .|.|.+..+|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            5788887766     99999999999999999986

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00092  Score=40.15  Aligned_cols=32  Identities=22%  Similarity=0.436  Sum_probs=24.4

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      .|.|.+-+|...  ++.|..+..|..|||.|+||
T Consensus         2 ~y~C~W~~C~R~--~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           2 EFVCHWGGCSRE--LRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCCCBTTCTTT--TCCCSSHHHHHHHTHHHHCC
T ss_pred             CeEEECCCCCCC--CCcchhHHHHHHHHhhcCCC
Confidence            466666555332  56799999999999999986

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00071  Score=42.13  Aligned_cols=28  Identities=36%  Similarity=0.846  Sum_probs=17.8

Q ss_pred             CCcceeec-CCCccCCchHHHHHHHHhcc
Q 014041          163 GTREYRCD-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       163 ~~k~~~C~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      |-|||.|. |++.|-.++++.+|...+.+
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            55666666 66666666666666655543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00078  Score=38.10  Aligned_cols=24  Identities=29%  Similarity=0.652  Sum_probs=22.2

Q ss_pred             ceecccccccccChHHHHHHHHhc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      ||.|..|+-.|+++.+|..||+..
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            799999999999999999999754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.25  E-value=0.0008  Score=39.06  Aligned_cols=23  Identities=13%  Similarity=0.450  Sum_probs=13.7

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      ||.|.+|++.|.+++-|.+|...
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qK   23 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQK   23 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTT
T ss_pred             CcccccccchhhHHHHHHHHHHH
Confidence            45566666666666666666555

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.24  E-value=0.0012  Score=37.23  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=18.8

Q ss_pred             cceeec---CCCccCCchHHHHHHHHh
Q 014041          165 REYRCD---CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       165 k~~~C~---C~~~F~~~~~L~~H~~~h  188 (432)
                      .||+|.   |+++|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            478884   888888888888887776

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.22  E-value=0.002  Score=36.30  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=22.6

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      .||+|+.-+|     ++.|...+.|++|.++|
T Consensus         2 ~py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCc-----cccccCHHHHhhhhhcc
Confidence            4788876655     99999999999999887

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0016  Score=36.97  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=13.2

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhh
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      |||.|..|       .......++|+.|+++
T Consensus         1 kpy~cqyc-------~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYC-------EFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSS-------SCCCSCSHHHHHHHHH
T ss_pred             CCcccccc-------ccccccchhhhhhhhc
Confidence            35555555       5555555555555555

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.21  E-value=0.00099  Score=36.14  Aligned_cols=22  Identities=27%  Similarity=0.718  Sum_probs=13.6

Q ss_pred             eeec-CCCccCCchHHHHHHHHh
Q 014041          167 YRCD-CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       167 ~~C~-C~~~F~~~~~L~~H~~~h  188 (432)
                      |+|. |.++|..++.|.+|.+.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            4565 666666666666666655

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0024  Score=35.98  Aligned_cols=29  Identities=17%  Similarity=0.419  Sum_probs=24.2

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      +..|.|..|       ...|.++-.|..||..|+||
T Consensus         2 eqvftcs~c-------qe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVC-------QETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSS-------CCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHH-------HHHHHHHHhheeeeecccCC
Confidence            356888888       88899999999999888875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0017  Score=39.83  Aligned_cols=27  Identities=22%  Similarity=0.671  Sum_probs=22.9

Q ss_pred             CCcceeec---CCCccCCchHHHHHHHHhc
Q 014041          163 GTREYRCD---CGTLFSRKDSFITHRAFCD  189 (432)
Q Consensus       163 ~~k~~~C~---C~~~F~~~~~L~~H~~~h~  189 (432)
                      .+|||.|.   |+.+|.+.+.|..|+.+|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47899994   9999999999999988885

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0014  Score=37.19  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=17.7

Q ss_pred             CcccccccccccCChHHhhhhhcc-cC
Q 014041          138 KKWKCEKCSKKYAVQSDWKAHSKI-CG  163 (432)
Q Consensus       138 kp~~C~~C~k~F~~~~~L~~H~~~-~~  163 (432)
                      |||.|.+|...-...++|+.|+++ |+
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            467777777766677777777766 54

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.002  Score=35.78  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.3

Q ss_pred             ceecccccccccChHHHHHHHH
Q 014041           63 RFLCEICNKGFQRDQNLQLHRR   84 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r   84 (432)
                      ||+|..|||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6999999999999999999954

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.78  E-value=0.0022  Score=36.28  Aligned_cols=26  Identities=35%  Similarity=0.654  Sum_probs=23.6

Q ss_pred             Cceecc--cccccccChHHHHHHHHhcC
Q 014041           62 NRFLCE--ICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C~--~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      +||.|.  -|.|.|.+...|.+|..+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            589995  59999999999999999997

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0062  Score=37.26  Aligned_cols=30  Identities=13%  Similarity=0.440  Sum_probs=25.7

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      .+|||.|...+|     +..|.+.+.|..|...|.
T Consensus         3 ddkPF~C~~pGC-----~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGC-----GQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTT-----CCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCc-----cccccchHHHHHhhhhhe
Confidence            478999988766     999999999999988885

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.53  E-value=0.006  Score=37.55  Aligned_cols=30  Identities=13%  Similarity=0.355  Sum_probs=24.2

Q ss_pred             CcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCC
Q 014041          102 KKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEK  138 (432)
Q Consensus       102 ~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gek  138 (432)
                      .+.|+|.+|       ++.|.+...|--|++.|..++
T Consensus         3 ~r~~~C~~C-------~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           3 PRSYTCSFC-------KREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSSEECTTT-------CCEESSHHHHHHHHHTTCCSC
T ss_pred             CCccCCCCC-------CCccCCcccccchHhhhcchH
Confidence            456888888       888888888888888886654

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0025  Score=36.91  Aligned_cols=26  Identities=31%  Similarity=0.768  Sum_probs=23.4

Q ss_pred             Cceeccc--ccccccChHHHHHHH-HhcC
Q 014041           62 NRFLCEI--CNKGFQRDQNLQLHR-RGHN   87 (432)
Q Consensus        62 k~f~C~~--Cgk~F~~~~~L~~H~-r~H~   87 (432)
                      |||.|++  |.|.|...+.-..|+ |+|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            6899987  999999999999996 8886

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0063  Score=34.40  Aligned_cols=28  Identities=21%  Similarity=0.409  Sum_probs=24.9

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      +||+|..|       .......++|..|++.-+++
T Consensus         1 rPFkC~~C-------sFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYC-------SFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSS-------SCEESSHHHHHHHHHHHHSS
T ss_pred             CCccccee-------cccccCcchHHHHHHHHccC
Confidence            58999999       99999999999999986664

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.0038  Score=34.59  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=14.5

Q ss_pred             cccccccccccCChHHhhhhhc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSK  160 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~  160 (432)
                      ||+|..|||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            5667777777666666666643

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0045  Score=35.82  Aligned_cols=29  Identities=28%  Similarity=0.606  Sum_probs=21.4

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHH-hhhcC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHF-SRKHG  136 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~-~~H~g  136 (432)
                      |||.|.+-+|     .|+|...+.-.+|. |+|..
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhccccccC
Confidence            5788877655     88888888877885 66754

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.98  E-value=0.0066  Score=32.93  Aligned_cols=24  Identities=29%  Similarity=0.630  Sum_probs=21.5

Q ss_pred             eecccccccccChHHHHHHHHhcC
Q 014041           64 FLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |.|++|-|.|.++.++..|.++-+
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            899999999999999999977643

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.52  E-value=0.0061  Score=33.08  Aligned_cols=20  Identities=30%  Similarity=0.630  Sum_probs=8.9

Q ss_pred             cccccccccCChHHhhhhhc
Q 014041          141 KCEKCSKKYAVQSDWKAHSK  160 (432)
Q Consensus       141 ~C~~C~k~F~~~~~L~~H~~  160 (432)
                      .|++|-|.|.+++++..|.+
T Consensus         3 pcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           3 PCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             ECTTTCCEESCHHHHHHHHH
T ss_pred             CCchhhHHhccccCceEEEE
Confidence            34444444444444444443

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.25  E-value=0.013  Score=37.56  Aligned_cols=27  Identities=26%  Similarity=0.570  Sum_probs=24.2

Q ss_pred             CCceecccccccccChHHHHHHHHhcC
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      ...|.|-+|||.|.....|+.|...|-
T Consensus         4 ~~l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           4 AGILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             cceeeccccccccCCHHHHhHhHHhcC
Confidence            346999999999999999999998885

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.78  E-value=0.022  Score=32.63  Aligned_cols=30  Identities=33%  Similarity=0.616  Sum_probs=26.0

Q ss_pred             cceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCC
Q 014041          103 KVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGE  137 (432)
Q Consensus       103 k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~ge  137 (432)
                      |.|+|...+|     +..|.....|..|+-.|+||
T Consensus         2 k~~iCsf~dC-----~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADC-----GAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGG-----CCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCc-----chhhccchhhhHHhhhhcCC
Confidence            4688887765     99999999999999999986

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.74  E-value=0.02  Score=30.85  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.9

Q ss_pred             CceecccccccccChHHHHHHHH
Q 014041           62 NRFLCEICNKGFQRDQNLQLHRR   84 (432)
Q Consensus        62 k~f~C~~Cgk~F~~~~~L~~H~r   84 (432)
                      .||+|.-|...|-.+..|+.||.
T Consensus         1 mpykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           1 MPYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999964

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.71  E-value=0.011  Score=31.90  Aligned_cols=21  Identities=29%  Similarity=0.808  Sum_probs=9.6

Q ss_pred             cccccccccccCChHHhhhhh
Q 014041          139 KWKCEKCSKKYAVQSDWKAHS  159 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~  159 (432)
                      ||+|.-|...|-.+.+|..||
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            344444444444444444443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.012  Score=32.65  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=16.3

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      .|.|+.|+....++++|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            36677777777777777777765

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.031  Score=32.95  Aligned_cols=25  Identities=28%  Similarity=0.878  Sum_probs=16.8

Q ss_pred             ceeec-CCCccCCchHHHHHHHHhcc
Q 014041          166 EYRCD-CGTLFSRKDSFITHRAFCDA  190 (432)
Q Consensus       166 ~~~C~-C~~~F~~~~~L~~H~~~h~~  190 (432)
                      .|.|. |++.|.++..+.+|...+.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            36676 77777777777777666644

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.057  Score=30.03  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=19.7

Q ss_pred             CCCCCCCCccCCHHHHHHHHhhh
Q 014041          112 CVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus       112 c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      |+|.+|+|.|...+.+.+|+-+|
T Consensus         4 CphkgC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           4 CPHKGCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCSTTCCCEESSHHHHHHHHGGG
T ss_pred             CCcccHHHHhhchHHHHHHhhcc
Confidence            56667799999999999999887

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.041  Score=30.54  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=23.1

Q ss_pred             ceecccccccccChHHHHHHHHhcC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |-+|+.|..+-..+..|+.|.|+|.
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            4689999999999999999999996

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.16  E-value=0.059  Score=31.72  Aligned_cols=27  Identities=30%  Similarity=0.641  Sum_probs=23.4

Q ss_pred             ceecccccccccChHHHHHHHHhcCCC
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGHNLP   89 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H~~~   89 (432)
                      .|.|..|||.|.++..+.+|-....++
T Consensus         4 afvcskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCCC
Confidence            499999999999999999998776644

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=0.092  Score=29.08  Aligned_cols=24  Identities=17%  Similarity=0.134  Sum_probs=16.9

Q ss_pred             ceeCCCCCCCCCCCCCccCCHHHHHHHHhhh
Q 014041          104 VYICPEKSCVHHDPSRALGDLTGIKKHFSRK  134 (432)
Q Consensus       104 ~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H  134 (432)
                      |-+|+.|       .....++..|+.|.|+|
T Consensus         2 pekc~ec-------syscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSEC-------SYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSS-------SCEESSHHHHHHHHGGG
T ss_pred             CccCccc-------ccccCcHHHHHHhhccc
Confidence            3466666       77777777777777776

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.08  Score=29.25  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=21.5

Q ss_pred             ceecccccccccChHHHHHHHHhc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      .|.|+.|+-...+++.|..|+|.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            489999999999999999998754

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.54  E-value=0.11  Score=30.27  Aligned_cols=25  Identities=28%  Similarity=0.602  Sum_probs=21.4

Q ss_pred             CCceecccccccccChHHHHHHHHh
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRG   85 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~   85 (432)
                      ..+|.|.-||..|...+.|..|+..
T Consensus         6 parf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ccceeccccceeecChhHHHhhhhe
Confidence            3569999999999999999998654

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=89.22  E-value=0.12  Score=29.42  Aligned_cols=26  Identities=27%  Similarity=0.723  Sum_probs=23.8

Q ss_pred             Cceec--ccccccccChHHHHHHHHhcC
Q 014041           62 NRFLC--EICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        62 k~f~C--~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      |+|.|  +.|+..|.....|..|+..|+
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHT   29 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHT   29 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHH
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhc
Confidence            67999  569999999999999999997

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=88.44  E-value=0.14  Score=27.99  Aligned_cols=23  Identities=26%  Similarity=0.703  Sum_probs=17.8

Q ss_pred             eeec---CCCccCCchHHHHHHHHhc
Q 014041          167 YRCD---CGTLFSRKDSFITHRAFCD  189 (432)
Q Consensus       167 ~~C~---C~~~F~~~~~L~~H~~~h~  189 (432)
                      |.|.   |++.|+....|+.|...|.
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeeccc
Confidence            6773   8888888888888877764

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=0.053  Score=37.41  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=28.7

Q ss_pred             CCCCcCCCCCCCCCCChhhhhcCccccCCCCceecccccccc
Q 014041           32 NQLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKGF   73 (432)
Q Consensus        32 ~~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~F   73 (432)
                      ...-|+|+.|++.|..-+++.+   .-.....|.|.+|+-..
T Consensus        11 ~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCBC
T ss_pred             cCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCEE
Confidence            3457999999999998887776   22334569999998654

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.11  Score=35.67  Aligned_cols=39  Identities=18%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             cCCcceeCCCCCCCCCCCCCccCCHHHHHHHHhhhcCCCcccccccccc
Q 014041          100 VRKKVYICPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKK  148 (432)
Q Consensus       100 ~~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~gekp~~C~~C~k~  148 (432)
                      .....|+|+.|       ++.|.....+..   .-...-.|.|.+|+-.
T Consensus        10 ~~~~~y~Cp~C-------~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVC-------SSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSS-------CCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             ccCCceECCCC-------CCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            34566888877       777766665543   2223344777777654

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.50  E-value=0.39  Score=27.78  Aligned_cols=23  Identities=13%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             CCCCCCCCCccCCHHHHHHHHhh
Q 014041          111 SCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus       111 ~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      .|.|.+|++.|.+...|..|+..
T Consensus         3 nChW~~C~~eFdtQd~LV~Hinn   25 (32)
T d2glia1           3 DCRWDGCSQEFDSQEQLVHHINS   25 (32)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHH
T ss_pred             cccccccccccCCHHHHHHHccc
Confidence            47888999999999999999876

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=0.12  Score=36.22  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             CCceecccccccccChHHHHHHHHh
Q 014041           61 TNRFLCEICNKGFQRDQNLQLHRRG   85 (432)
Q Consensus        61 ~k~f~C~~Cgk~F~~~~~L~~H~r~   85 (432)
                      ...|-|.+|+|.|.+...|..|+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3459999999999999999999754

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.56  E-value=0.31  Score=27.20  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=20.9

Q ss_pred             ceecccccccccChHHHHHHHHhc
Q 014041           63 RFLCEICNKGFQRDQNLQLHRRGH   86 (432)
Q Consensus        63 ~f~C~~Cgk~F~~~~~L~~H~r~H   86 (432)
                      .|.|..|||..++..-++.|+...
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmad   25 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMAN   25 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEeec
Confidence            489999999999999999996543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=83.23  E-value=0.2  Score=29.50  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=14.0

Q ss_pred             CCcceeCCCCCCCCCCCCCccCCHHHHHHHHhh
Q 014041          101 RKKVYICPEKSCVHHDPSRALGDLTGIKKHFSR  133 (432)
Q Consensus       101 ~~k~y~C~~C~c~~~~c~k~f~~~~~L~~H~~~  133 (432)
                      ++..|.|.+|       .+.|...+++-+|..+
T Consensus         5 g~~~yRC~~C-------~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           5 GEHTYRCKVC-------SRVYTHISNFCRHYVT   30 (37)
T ss_dssp             ETTEEECTTT-------CCEESSHHHHHHHHHH
T ss_pred             cCcEEEeehh-------hHHHHHHHHHHHHHHh
Confidence            3344555555       5555555555555544

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.70  E-value=0.18  Score=30.80  Aligned_cols=27  Identities=11%  Similarity=0.176  Sum_probs=20.3

Q ss_pred             CCCcCCCCCCCCCCChhhhhcCccccCCCCceeccccccc
Q 014041           33 QLKRKRNLPGTPDPDAEVIALSPKSLMATNRFLCEICNKG   72 (432)
Q Consensus        33 ~~k~~c~~cg~~~~~~~~l~~h~~~h~~~k~f~C~~Cgk~   72 (432)
                      ++.|+|.+||-.             +.++.|-+|++||..
T Consensus         3 ~~~~~C~vCG~i-------------~~g~~P~~CPvCg~~   29 (37)
T d1nnqa2           3 KKVYICPICGYT-------------AVDEAPEYCPVCGAP   29 (37)
T ss_dssp             SCEEECTTTCCE-------------EESCCCSBCTTTCCB
T ss_pred             CcEEECCCCCCE-------------ecCCCCCcCCCCCCc
Confidence            467899999983             345667889999854

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.37  E-value=0.54  Score=29.76  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=24.0

Q ss_pred             CCCceecccccccccChHHHHHHHHhcC
Q 014041           60 ATNRFLCEICNKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        60 ~~k~f~C~~Cgk~F~~~~~L~~H~r~H~   87 (432)
                      .+.|-.|++|+.......+|.+|+..-+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999975544

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.29  E-value=0.32  Score=30.86  Aligned_cols=16  Identities=6%  Similarity=0.264  Sum_probs=7.2

Q ss_pred             CCccCCHHHHHHHHhh
Q 014041          118 SRALGDLTGIKKHFSR  133 (432)
Q Consensus       118 ~k~f~~~~~L~~H~~~  133 (432)
                      +.......+|.+|+..
T Consensus        31 ~avirqsrnlrrhlel   46 (54)
T d1yuja_          31 YAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             CCEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444433

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=82.08  E-value=0.53  Score=26.24  Aligned_cols=21  Identities=29%  Similarity=0.703  Sum_probs=13.7

Q ss_pred             ceeec---CCCccCCchHHHHHHH
Q 014041          166 EYRCD---CGTLFSRKDSFITHRA  186 (432)
Q Consensus       166 ~~~C~---C~~~F~~~~~L~~H~~  186 (432)
                      .|.|+   |..+|..+..+++|..
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHh
Confidence            46664   7777777777776644

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.75  E-value=0.81  Score=25.47  Aligned_cols=24  Identities=29%  Similarity=0.620  Sum_probs=18.1

Q ss_pred             eeCCCCCCCCCCCCCccCCHHHHHHHHhhhc
Q 014041          105 YICPEKSCVHHDPSRALGDLTGIKKHFSRKH  135 (432)
Q Consensus       105 y~C~~C~c~~~~c~k~f~~~~~L~~H~~~H~  135 (432)
                      |.|..|       +|.+.+...++.|+..-+
T Consensus         3 ftc~hc-------gkqlks~~gmkyhvmadh   26 (30)
T d2ctda2           3 FTCHHC-------GKQLRSLAGMKYHVMANH   26 (30)
T ss_dssp             CCCSSS-------CCCCSSHHHHHHHHHHHT
T ss_pred             eechhH-------HHHHhhccCceEEEeecc
Confidence            667777       888888888888876544

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.67  E-value=0.56  Score=32.55  Aligned_cols=23  Identities=17%  Similarity=0.491  Sum_probs=19.3

Q ss_pred             cccccccccccCChHHhhhhhcc
Q 014041          139 KWKCEKCSKKYAVQSDWKAHSKI  161 (432)
Q Consensus       139 p~~C~~C~k~F~~~~~L~~H~~~  161 (432)
                      -|-|..|+|.|.+...|..|+++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            37788888888888888888886

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.01  E-value=0.3  Score=28.84  Aligned_cols=24  Identities=33%  Similarity=0.671  Sum_probs=19.3

Q ss_pred             eec--ccc---cccccChHHHHHHHHhcC
Q 014041           64 FLC--EIC---NKGFQRDQNLQLHRRGHN   87 (432)
Q Consensus        64 f~C--~~C---gk~F~~~~~L~~H~r~H~   87 (432)
                      |.|  ..|   ++.|+....|..|||.|+
T Consensus         3 y~C~W~~C~R~~~pf~a~YkLv~H~R~HT   31 (33)
T d2glia2           3 FVCHWGGCSRELRPFKAQYMLVVHMRRHT   31 (33)
T ss_dssp             CCCCBTTCTTTTCCCSSHHHHHHHTHHHH
T ss_pred             eEEECCCCCCCCCcchhHHHHHHHHhhcC
Confidence            555  345   466999999999999998

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.18  E-value=0.43  Score=26.37  Aligned_cols=18  Identities=17%  Similarity=0.390  Sum_probs=15.8

Q ss_pred             CCCccCCchHHHHHHHHh
Q 014041          171 CGTLFSRKDSFITHRAFC  188 (432)
Q Consensus       171 C~~~F~~~~~L~~H~~~h  188 (432)
                      |.+.|+..+.+++|+-+|
T Consensus         9 C~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           9 CTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             CCCEESSHHHHHHHHGGG
T ss_pred             HHHHhhchHHHHHHhhcc
Confidence            999999999999998776