Query 014044
Match_columns 432
No_of_seqs 242 out of 1239
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 01:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2771 Subunit of tRNA-specif 100.0 2.6E-50 5.6E-55 398.3 15.4 292 20-410 32-338 (344)
2 COG0590 CumB Cytosine/adenosin 100.0 2.6E-31 5.7E-36 241.4 16.3 144 148-418 6-151 (152)
3 PRK10860 tRNA-specific adenosi 100.0 1.9E-29 4E-34 233.5 17.0 142 150-419 13-156 (172)
4 cd01285 nucleoside_deaminase N 99.9 2.1E-23 4.6E-28 179.0 12.2 105 154-385 1-107 (109)
5 PRK10786 ribD bifunctional dia 99.9 8.2E-21 1.8E-25 194.7 16.1 82 344-429 64-151 (367)
6 TIGR00326 eubact_ribD riboflav 99.9 5.3E-21 1.2E-25 194.2 14.1 82 344-429 58-145 (344)
7 PLN02807 diaminohydroxyphospho 99.8 1.2E-20 2.5E-25 194.2 15.7 83 343-429 92-180 (380)
8 KOG1018 Cytosine deaminase FCY 99.8 4.3E-20 9.3E-25 170.4 12.5 155 146-424 7-166 (169)
9 cd01284 Riboflavin_deaminase-r 99.8 1.2E-19 2.7E-24 157.8 11.2 50 342-391 58-113 (115)
10 PF00383 dCMP_cyt_deam_1: Cyti 99.8 4.7E-19 1E-23 148.8 11.3 98 149-374 3-102 (102)
11 PHA02588 cd deoxycytidylate de 99.8 1.6E-18 3.4E-23 160.2 14.5 67 342-415 98-164 (168)
12 cd01286 deoxycytidylate_deamin 99.7 2E-17 4.4E-22 146.9 13.7 38 342-379 85-122 (131)
13 TIGR02571 ComEB ComE operon pr 99.7 2.2E-17 4.9E-22 150.1 12.6 123 152-392 8-131 (151)
14 cd00786 cytidine_deaminase-lik 99.7 1.8E-17 3.8E-22 139.3 10.4 32 343-374 64-95 (96)
15 COG0117 RibD Pyrimidine deamin 99.7 3.4E-16 7.4E-21 139.9 13.5 75 342-420 65-145 (146)
16 COG2131 ComEB Deoxycytidylate 99.2 7.3E-11 1.6E-15 108.2 10.6 37 344-380 96-132 (164)
17 cd01283 cytidine_deaminase Cyt 98.8 2.8E-08 6E-13 85.5 10.2 35 344-378 64-103 (112)
18 PRK14719 bifunctional RNAse/5- 98.5 2.2E-07 4.8E-12 95.7 7.4 82 342-429 42-144 (360)
19 KOG3127 Deoxycytidylate deamin 98.3 6.5E-06 1.4E-10 78.8 10.7 35 343-377 150-184 (230)
20 PF14439 Bd3614-deam: Bd3614-l 98.1 1.9E-05 4.1E-10 68.8 9.5 57 339-398 71-134 (136)
21 TIGR01354 cyt_deam_tetra cytid 94.9 0.37 8.1E-06 42.7 10.9 18 263-280 45-62 (127)
22 KOG2771 Subunit of tRNA-specif 55.3 0.64 1.4E-05 47.7 -5.6 98 4-102 1-98 (344)
23 TIGR02214 spoVD_pbp stage V sp 39.1 46 0.00099 37.1 5.2 18 170-187 241-258 (636)
24 PRK15105 peptidoglycan synthas 37.4 52 0.0011 36.4 5.2 18 170-187 259-276 (578)
25 COG0768 FtsI Cell division pro 36.3 56 0.0012 36.2 5.3 21 170-190 268-288 (599)
26 TIGR02074 PBP_1a_fam penicilli 34.5 64 0.0014 35.3 5.3 19 169-187 256-274 (530)
27 PF14424 Toxin-deaminase: The 29.3 39 0.00084 30.3 2.1 22 345-366 98-119 (133)
28 PF00905 Transpeptidase: Penic 27.1 52 0.0011 32.6 2.8 20 170-189 1-20 (304)
29 PRK10795 penicillin-binding pr 23.6 80 0.0017 35.3 3.7 18 170-187 272-289 (634)
30 PF05988 DUF899: Bacterial pro 22.6 74 0.0016 31.0 2.8 18 269-286 25-42 (211)
31 TIGR03423 pbp2_mrdA penicillin 20.8 94 0.002 34.3 3.6 18 170-187 249-266 (592)
No 1
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=100.00 E-value=2.6e-50 Score=398.30 Aligned_cols=292 Identities=32% Similarity=0.526 Sum_probs=223.6
Q ss_pred CCceeEEEEeeCchhHHHHH---HHHhhccCCCCCCCccccccccccCCCcceeEEEEeecccCcccCCCchhhHHHHhh
Q 014044 20 QPTVNVFASMVEPKLANTII---SRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNRMNSLPQDVQELVN 96 (432)
Q Consensus 20 ~~lv~v~a~~I~~K~~~~li---~r~L~~~~Pl~~L~HLKRvrk~~~~~g~~~L~viLc~~~~~~~~~~~l~~~l~~lv~ 96 (432)
-+++++|.+.+.|+...+.| ++++.. .+++.|+||||||.....++...+.++||+.+... .+..|.++.+
T Consensus 32 ~~ti~~~~~~~~ple~kk~i~~v~~~~~~-~~~~~l~hlkRv~~~~~d~~~~~~e~v~c~~~~~s-----~~~~l~~l~~ 105 (344)
T KOG2771|consen 32 CETIPVWSARAAPLEDKKVIGRVIKELSR-ELPESLRHLKRVRPYRKDGSSLILEDVLCLKSPES-----AELILGDLED 105 (344)
T ss_pred CCcchhheeeecchHHHHHHHHHHHHhcc-CChHHHHHHHHhhhhcccCCcchhhhhhccCccch-----hhHHHHhhhh
Confidence 46778887777655544444 155554 23468999999996554456778889999986533 2334455544
Q ss_pred hccC------CceeeeccccCCCCHHHHHHhcCcCccccCCCCCCCCCCC--CCChhhHHHHHHHHHHHHHHHHcCCCCc
Q 014044 97 SYQL------SPFITKVCKNAALSKEEWEEQCKLWPTSYHPPTYNIDGIP--GFNEDDSQSIFSFMKSAVELAQSGDGSI 168 (432)
Q Consensus 97 ~~~l------~~~i~~VP~~~P~treqwe~~sk~WP~~fhp~~~~~~~~~--~f~~~~~~~~~~~m~~A~e~a~~g~g~~ 168 (432)
.-.. ..+.++||+++|.||+||++|.+|||++||||++...... .|+.++.+.+.++|+.++++|..|.-+.
T Consensus 106 ~~~v~~~~~~~v~~~~Vp~~~p~tr~qfees~~~wpv~~h~n~~~~~l~~G~~fs~~e~~~~~ri~e~~I~~a~~~~~~~ 185 (344)
T KOG2771|consen 106 SGAVSPRLVGLVRSVEVPEFAPLTREQFEESKEYWPVSFHPNHEDEQLADGSFFSDEERGEIARIGELLIAMATDGHASR 185 (344)
T ss_pred ccccchhhcccceeeeccccCCCCHHHHHhhheeeecccCCCchHHHHhccchhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4332 2367889999999999999999999999999987543222 3899999999999999999999997778
Q ss_pred ceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCCCCCCCcccccccCCcccCCc
Q 014044 169 VNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPNDFPSETRKSYSGVSCLNP 248 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 248 (432)
+++|+||||....|+|.+.|+.+
T Consensus 186 ~~~a~I~~p~~~~Via~~~~~~~--------------------------------------------------------- 208 (344)
T KOG2771|consen 186 PVSAAIVDPVMDRVIAAGTGEVC--------------------------------------------------------- 208 (344)
T ss_pred CccceecCCccceEEecCCCccc---------------------------------------------------------
Confidence 89999999999999999988643
Q ss_pred ccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC----CCcccccccccccccCcc
Q 014044 249 WQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI----GTPAKRQKTDLANVENSE 324 (432)
Q Consensus 249 ~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~----~~~~kr~k~~~~~~~~~~ 324 (432)
..+|..|++|++|+.||+|+..- .|-.. ..++.+ .+|.++|+.. .+
T Consensus 209 -------------~~~P~eh~~mv~v~~v~rrq~~~---------~~~~~--~~~~~~f~~~~~~~~~~~~~------v~ 258 (344)
T KOG2771|consen 209 -------------AYNPIEHCVMVLVHFVARRQEEG---------TWDLH--PIPLLIFNAVSSPFYKQTVA------VQ 258 (344)
T ss_pred -------------ccCcHHHHHHHHHHHHHHHHhcc---------ccccc--cccccccccccchhhhhhch------hc
Confidence 12699999999999999998731 22111 111111 2233333321 11
Q ss_pred cCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeec
Q 014044 325 ELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVL 404 (432)
Q Consensus 325 ~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gv 404 (432)
.+ +.....+||+|+||++|+|+|||.||+|||+|+||+||||+.++..+|++|+.+.+|+++.|||+|+||+|+
T Consensus 259 ~~------D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~LNhry~vfr~~ 332 (344)
T KOG2771|consen 259 LL------DVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKSLNHRYEVFRGY 332 (344)
T ss_pred cc------cccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccccCcceEEEEee
Confidence 11 122335789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHH
Q 014044 405 LPKEIL 410 (432)
Q Consensus 405 l~eEa~ 410 (432)
+++++.
T Consensus 333 ~e~d~~ 338 (344)
T KOG2771|consen 333 LEEDPI 338 (344)
T ss_pred cccccc
Confidence 998765
No 2
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-31 Score=241.36 Aligned_cols=144 Identities=31% Similarity=0.444 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHc-C-CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCC
Q 014044 148 QSIFSFMKSAVELAQS-G-DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT 225 (432)
Q Consensus 148 ~~~~~~m~~A~e~a~~-g-~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 225 (432)
...+.||+.|+++|+. + .|.+|.|||||| ..+.||+.+++...
T Consensus 6 ~~~~~~m~~al~~A~~a~~~ge~PvGaviV~-~~~~ii~~~~N~~~---------------------------------- 50 (152)
T COG0590 6 EKDEDFMREALKEAKKAGDEGEVPVGAVIVD-ADGEIIARGHNRRE---------------------------------- 50 (152)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCCEEEEEEc-CCCCEEEEecCccc----------------------------------
Confidence 4567889999988875 3 678899999999 77899999987542
Q ss_pred CCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCC
Q 014044 226 SLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTS 305 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~ 305 (432)
...+|+.||+|.||+.+++..+
T Consensus 51 -----------------------------------~~~dptaHAEi~air~a~~~~~----------------------- 72 (152)
T COG0590 51 -----------------------------------EDNDPTAHAEILAIRAAAETLG----------------------- 72 (152)
T ss_pred -----------------------------------cCCCccccHHHHHHHHHHHhhC-----------------------
Confidence 2346999999999999988653
Q ss_pred CCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccc
Q 014044 306 IGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385 (432)
Q Consensus 306 ~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~ 385 (432)
.|.|.|||||+|+|||+||++||+||||+|||||+++++.|+.|+.
T Consensus 73 ----------------------------------~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~~ 118 (152)
T COG0590 73 ----------------------------------NYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGSL 118 (152)
T ss_pred ----------------------------------CCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCcc
Confidence 3999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCcEEEeeccHHHHHHHHHHHHH
Q 014044 386 HRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAA 418 (432)
Q Consensus 386 ~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~ 418 (432)
++++.++.+||+++|.+|++++||..+...|..
T Consensus 119 ~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 119 LDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred cccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 999999999999999999999999998887754
No 3
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=1.9e-29 Score=233.50 Aligned_cols=142 Identities=25% Similarity=0.365 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCC
Q 014044 150 IFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSL 227 (432)
Q Consensus 150 ~~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 227 (432)
...||+.|+++|+.+ .|..++|||||+ .++||+.|++...
T Consensus 13 ~~~~m~~A~~~A~~a~~~g~~pvGAVIV~--~g~IIa~g~N~~~------------------------------------ 54 (172)
T PRK10860 13 HEYWMRHALTLAKRAWDEREVPVGAVLVH--NNRVIGEGWNRPI------------------------------------ 54 (172)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEEEe--CCEEEEEeeCCCC------------------------------------
Confidence 456899999999975 677789999997 5899999987532
Q ss_pred CCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 228 PPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIG 307 (432)
Q Consensus 228 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~ 307 (432)
...+|+.||+|.||+.++++.
T Consensus 55 ---------------------------------~~~d~~~HAEi~Ai~~a~~~~-------------------------- 75 (172)
T PRK10860 55 ---------------------------------GRHDPTAHAEIMALRQGGLVL-------------------------- 75 (172)
T ss_pred ---------------------------------CCCCCccCHHHHHHHHHHHhc--------------------------
Confidence 123689999999999876532
Q ss_pred CcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchh
Q 014044 308 TPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHR 387 (432)
Q Consensus 308 ~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~ 387 (432)
+.|.+.|||||||+|||+||++||+|+||+|||||.+++..|+.|+.++
T Consensus 76 -------------------------------~~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~ 124 (172)
T PRK10860 76 -------------------------------QNYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGSLMD 124 (172)
T ss_pred -------------------------------CCCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCcHHH
Confidence 1366889999999999999999999999999999999999999999889
Q ss_pred hcccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 014044 388 LQGEKSLNHHYAVFRVLLPKEILNKNEVVAAR 419 (432)
Q Consensus 388 l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R 419 (432)
++...+++|+++|++|++++||.+|+..|.+.
T Consensus 125 ~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~ 156 (172)
T PRK10860 125 VLHHPGMNHRVEITEGVLADECAALLSDFFRM 156 (172)
T ss_pred HhhcccCCCCCEEEeCccHHHHHHHHHHHHHH
Confidence 88888899999999999999999998887654
No 4
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.90 E-value=2.1e-23 Score=179.00 Aligned_cols=105 Identities=38% Similarity=0.621 Sum_probs=88.2
Q ss_pred HHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCCCCC
Q 014044 154 MKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPND 231 (432)
Q Consensus 154 m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 231 (432)
|+.|+++|+.+ .|..++||||||+. ++||+.+.+...
T Consensus 1 m~~al~~a~~~~~~~~~~vgaviv~~~-~~ii~~g~n~~~---------------------------------------- 39 (109)
T cd01285 1 MRLAIELARKALAEGEVPFGAVIVDDD-GKVIARGHNRVE---------------------------------------- 39 (109)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEEEeCC-CEEEEEEeCCCC----------------------------------------
Confidence 57788888853 56778899999977 899999987542
Q ss_pred CCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 014044 232 FPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPAK 311 (432)
Q Consensus 232 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~k 311 (432)
...+|+.||+|.||..+.+..+
T Consensus 40 -----------------------------~~~~~~~HAE~~ai~~~~~~~~----------------------------- 61 (109)
T cd01285 40 -----------------------------QDGDPTAHAEIVAIRNAARRLG----------------------------- 61 (109)
T ss_pred -----------------------------CCCCCcccHHHHHHHHHHHHhC-----------------------------
Confidence 1247899999999999876432
Q ss_pred ccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccc
Q 014044 312 RQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385 (432)
Q Consensus 312 r~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~ 385 (432)
.|+++|++||+|+|||+||++||+|+||+||||+.+++..|+.++.
T Consensus 62 ----------------------------~~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~g~~~~~ 107 (109)
T cd01285 62 ----------------------------SYLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKLGGIGFL 107 (109)
T ss_pred ----------------------------CCccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCcccccccC
Confidence 3789999999999999999999999999999999999998887653
No 5
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=99.85 E-value=8.2e-21 Score=194.71 Aligned_cols=82 Identities=23% Similarity=0.252 Sum_probs=75.0
Q ss_pred cCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHHH
Q 014044 344 TGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVA 417 (432)
Q Consensus 344 ~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~ 417 (432)
.|||||||+||| +||+.||+++||+||||+..+++.+..|+...++. .++++|+.|++++||.++++.|.
T Consensus 64 ~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~----~~gi~v~~~~~~~e~~~l~~~f~ 139 (367)
T PRK10786 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEALNKGFL 139 (367)
T ss_pred CCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCchHHHHHh----cCCcEEEcCCcHHHHHHHHHHHH
Confidence 689999999999 89999999999999999999999888776666665 35899999999999999999999
Q ss_pred HHHhhCCCCccc
Q 014044 418 ARTSTTNTNATT 429 (432)
Q Consensus 418 ~R~~~~~~~~~~ 429 (432)
.+..+++||+|-
T Consensus 140 ~~~~~~rP~V~~ 151 (367)
T PRK10786 140 KRMRTGFPYIQL 151 (367)
T ss_pred HHhhcccceEEE
Confidence 999999999984
No 6
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.85 E-value=5.3e-21 Score=194.24 Aligned_cols=82 Identities=22% Similarity=0.284 Sum_probs=74.9
Q ss_pred cCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHHH
Q 014044 344 TGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVA 417 (432)
Q Consensus 344 ~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~ 417 (432)
+|||||||+||| +||++||+++||+|||||..+++.+..|+...++... +++|..|++++||.+++..|.
T Consensus 58 ~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~----gi~v~~~~~~~e~~~l~~~f~ 133 (344)
T TIGR00326 58 KGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQA----GIEVTFGILKEEAERLNKGFL 133 (344)
T ss_pred CCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccchHHHHHhcC----CcEEEeCCCHHHHHHHHHHHH
Confidence 799999999999 8999999999999999999999888877777776643 689999999999999999999
Q ss_pred HHHhhCCCCccc
Q 014044 418 ARTSTTNTNATT 429 (432)
Q Consensus 418 ~R~~~~~~~~~~ 429 (432)
.|..+++||++.
T Consensus 134 ~~~~~~rP~v~~ 145 (344)
T TIGR00326 134 KRMRTGLPYVQL 145 (344)
T ss_pred HhhhcCCCEEEE
Confidence 999999999975
No 7
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=99.85 E-value=1.2e-20 Score=194.18 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=75.3
Q ss_pred ccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014044 343 CTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 416 (432)
Q Consensus 343 ~~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~ 416 (432)
+.|+|||||+||| +||++||+++||+|||||..+++.+..|.+..++.. .+++|..|++++||.+|+..|
T Consensus 92 ~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~----~gi~V~~g~~~~e~~~l~~~f 167 (380)
T PLN02807 92 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRD----AGIEVTVGVEEELCRKLNEAF 167 (380)
T ss_pred cCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHh----CCCEEEeCcCHHHHHHHHHHH
Confidence 3689999999999 899999999999999999999998877777677654 369999999999999999999
Q ss_pred HHHHhhCCCCccc
Q 014044 417 AARTSTTNTNATT 429 (432)
Q Consensus 417 ~~R~~~~~~~~~~ 429 (432)
..|..+++||+|-
T Consensus 168 ~~~~~~~rP~V~l 180 (380)
T PLN02807 168 IHRMLTGKPFVTL 180 (380)
T ss_pred HHHHhhccccEEE
Confidence 9999999999984
No 8
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism]
Probab=99.83 E-value=4.3e-20 Score=170.44 Aligned_cols=155 Identities=26% Similarity=0.306 Sum_probs=121.4
Q ss_pred hHHHHHHHHHHHHHHHHcC--CC-CcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCC
Q 014044 146 DSQSIFSFMKSAVELAQSG--DG-SIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGES 222 (432)
Q Consensus 146 ~~~~~~~~m~~A~e~a~~g--~g-~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 222 (432)
.......+|+.|+++|+.+ .| +++.|||+||- +++|+|+|++...
T Consensus 7 ~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~-~g~v~a~g~n~~~------------------------------- 54 (169)
T KOG1018|consen 7 LSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHM-DGKVLASGGNMVN------------------------------- 54 (169)
T ss_pred cccccHHHHHHHHHHHHhhccCCCCCceEEEEEeC-CCeEEecccceec-------------------------------
Confidence 3445678999999999875 56 78889999997 9999999986432
Q ss_pred CCCCCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 014044 223 NHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQ 302 (432)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~ 302 (432)
....|++||.|.||++.-.--.
T Consensus 55 --------------------------------------~~~d~t~HaE~~~I~~~~~~~~-------------------- 76 (169)
T KOG1018|consen 55 --------------------------------------EKKDPTAHAEVIAIREEEVMCK-------------------- 76 (169)
T ss_pred --------------------------------------ccCCcchhhHHHHHhhHHHHhh--------------------
Confidence 2346999999999996321000
Q ss_pred CCCCCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCcc
Q 014044 303 PTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGAL 382 (432)
Q Consensus 303 ~~~~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~ 382 (432)
.-+.+++++++||||+|||+||++||.++||++||||+.++..|+.
T Consensus 77 ----------------------------------~~~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~~~~ 122 (169)
T KOG1018|consen 77 ----------------------------------SLRTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERFGGI 122 (169)
T ss_pred ----------------------------------hcCceeccCCEEEEEecccHHHHHHHHHcCCCEEEEeccccccccc
Confidence 0123899999999999999999999999999999999999999998
Q ss_pred ccchhhccc--ccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCC
Q 014044 383 GSVHRLQGE--KSLNHHYAVFRVLLPKEILNKNEVVAARTSTTN 424 (432)
Q Consensus 383 gs~~~l~~~--~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~ 424 (432)
|+..+.... +.+.+.+.+..++...++..+...|.-+.....
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~n~~~ 166 (169)
T KOG1018|consen 123 GFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRDNPKD 166 (169)
T ss_pred ceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhccccccCC
Confidence 876554432 345667888889999998888888877655443
No 9
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=99.81 E-value=1.2e-19 Score=157.81 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=43.8
Q ss_pred cccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhccc
Q 014044 342 LCTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGE 391 (432)
Q Consensus 342 l~~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~ 391 (432)
.+.|+|||+|+||| +||++||+|+||+||||+.+++..+..++.++++.+
T Consensus 58 ~l~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~ 113 (115)
T cd01284 58 LARGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRA 113 (115)
T ss_pred CCCCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHH
Confidence 45789999999999 899999999999999999999988777776666643
No 10
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.79 E-value=4.7e-19 Score=148.76 Aligned_cols=98 Identities=37% Similarity=0.495 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCC
Q 014044 149 SIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTS 226 (432)
Q Consensus 149 ~~~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 226 (432)
....+|+.|+++|+.. .+..++||||||| .+.+|+.|.+...
T Consensus 3 ~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~-~~~~i~~g~n~~~----------------------------------- 46 (102)
T PF00383_consen 3 WDEEFMRIAIELAKRSRPCGNFPVGAVIVDP-DGKIIATGYNGEP----------------------------------- 46 (102)
T ss_dssp HHHHHHHHHHHHHHTHBTTTSSSEEEEEEET-TTEEEEEEESBHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEEEec-cCccEEEEeeeee-----------------------------------
Confidence 4567899999998864 6777889999999 6889999987542
Q ss_pred CCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 014044 227 LPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI 306 (432)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~ 306 (432)
...+|..||+|.||..+++. .
T Consensus 47 ----------------------------------~~~~~~~HAE~~Ai~~~~~~-~------------------------ 67 (102)
T PF00383_consen 47 ----------------------------------PGKNPTIHAEMNAIRKAARN-G------------------------ 67 (102)
T ss_dssp ----------------------------------STTGGTB-HHHHHHHHHHHT-T------------------------
T ss_pred ----------------------------------eeccccccchhhhhhhhhhh-c------------------------
Confidence 12358999999999998764 1
Q ss_pred CCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEec
Q 014044 307 GTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAF 374 (432)
Q Consensus 307 ~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~ 374 (432)
...++|++||+|+|||.||++||+|+||+||||++
T Consensus 68 ---------------------------------~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 68 ---------------------------------GSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp ---------------------------------SSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred ---------------------------------cccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence 12348999999999999999999999999999984
No 11
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.79 E-value=1.6e-18 Score=160.20 Aligned_cols=67 Identities=19% Similarity=0.329 Sum_probs=51.7
Q ss_pred cccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHH
Q 014044 342 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEV 415 (432)
Q Consensus 342 l~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~ 415 (432)
.+.|+|||||+|||+||++||+++||+||||+...+... +.+..++. ..+++|.. +..+++.++|.+
T Consensus 98 ~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~--~~~~~~L~----~~Gi~v~~-~~~~~~~~~~~~ 164 (168)
T PHA02588 98 SIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNG--PGWDDILR----KSGIEVIQ-IPKEELNKLNWE 164 (168)
T ss_pred CCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCc--HHHHHHHH----HCCCEEEE-eCHHHHHhhhhh
Confidence 467999999999999999999999999999998855432 22345555 34678775 677787777754
No 12
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.75 E-value=2e-17 Score=146.89 Aligned_cols=38 Identities=26% Similarity=0.660 Sum_probs=34.9
Q ss_pred cccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCC
Q 014044 342 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNE 379 (432)
Q Consensus 342 l~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~ 379 (432)
.+.|++||||+|||+||+.+|+++||+||||+.+.+..
T Consensus 85 ~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 85 SLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred CcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence 35789999999999999999999999999999988764
No 13
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.74 E-value=2.2e-17 Score=150.08 Aligned_cols=123 Identities=22% Similarity=0.269 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcC-CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCCCC
Q 014044 152 SFMKSAVELAQSG-DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLPPN 230 (432)
Q Consensus 152 ~~m~~A~e~a~~g-~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 230 (432)
.||+.|+++|+.+ +.+.++|||||+ .++||+.|.+....-.. +|..
T Consensus 8 ~fM~~A~~~A~rs~~~~~~VGAVIV~--d~~IIs~GyN~~~~g~~--------~~~~----------------------- 54 (151)
T TIGR02571 8 YFMAQSHLLALRSTCTRLSVGATIVR--DKRIIAGGYNGSVAGGV--------HCID----------------------- 54 (151)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEE--CCEEEEEEECCCCCCCC--------cccc-----------------------
Confidence 5899999999975 566678899994 68999999987531100 0100
Q ss_pred CCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 014044 231 DFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGTPA 310 (432)
Q Consensus 231 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 310 (432)
.++.. ......+..||+|.||..++.. .
T Consensus 55 ------------------~~~~~-----~~~~~~~~~HAE~nAI~~a~~~-~---------------------------- 82 (151)
T TIGR02571 55 ------------------EGCYV-----VDGHCVRTIHAEMNALLQCAKF-G---------------------------- 82 (151)
T ss_pred ------------------ccccc-----cccccCCccCHHHHHHHHHHhc-C----------------------------
Confidence 00000 0012247899999999987631 0
Q ss_pred cccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhhcc
Q 014044 311 KRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQG 390 (432)
Q Consensus 311 kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~ 390 (432)
..+.|++||||+|||+||++||+++||+||||+...+... ....++.
T Consensus 83 ------------------------------~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~---~~~~~l~ 129 (151)
T TIGR02571 83 ------------------------------VSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP---YAIELFE 129 (151)
T ss_pred ------------------------------CCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH---HHHHHHH
Confidence 1257999999999999999999999999999997655432 1245555
Q ss_pred cc
Q 014044 391 EK 392 (432)
Q Consensus 391 ~~ 392 (432)
..
T Consensus 130 ~~ 131 (151)
T TIGR02571 130 QA 131 (151)
T ss_pred HC
Confidence 43
No 14
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.73 E-value=1.8e-17 Score=139.33 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=30.6
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEec
Q 014044 343 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAF 374 (432)
Q Consensus 343 ~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~ 374 (432)
++|++||+|+|||.||+++|+|+||++|||+.
T Consensus 64 ~~~~tly~tlePC~mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 64 TKGQMLYVALSPCGACAQLIIELGIKDVIVVL 95 (96)
T ss_pred CCceEEEEECCChHHHHHHHHHhCCCCEEEee
Confidence 58999999999999999999999999999985
No 15
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=99.69 E-value=3.4e-16 Score=139.95 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=66.2
Q ss_pred cccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHH
Q 014044 342 LCTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEV 415 (432)
Q Consensus 342 l~~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~ 415 (432)
...|+|+|||+||| |.|+.+|+.+||+|||++..+|+...-|.+...+. ..+++|.-|+|++|+..+++.
T Consensus 65 ~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~G~~~L~----~aGi~V~~gil~~e~~~l~~~ 140 (146)
T COG0117 65 AARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGGGLARLR----AAGIEVEVGILEEEAEKLNEG 140 (146)
T ss_pred ccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCchHHHHH----HcCCeEEEehhHHHHHHHHHH
Confidence 34789999999999 79999999999999999999999766666666655 458999999999999999999
Q ss_pred HHHHH
Q 014044 416 VAART 420 (432)
Q Consensus 416 ~~~R~ 420 (432)
|..|.
T Consensus 141 f~~~~ 145 (146)
T COG0117 141 FLKRM 145 (146)
T ss_pred HHccc
Confidence 98874
No 16
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.21 E-value=7.3e-11 Score=108.22 Aligned_cols=37 Identities=32% Similarity=0.707 Sum_probs=35.0
Q ss_pred cCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCC
Q 014044 344 TGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEG 380 (432)
Q Consensus 344 ~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g 380 (432)
.|++||+|+.||.+|+..|+.+||++|||+.+.+...
T Consensus 96 ~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~ 132 (164)
T COG2131 96 EGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTET 132 (164)
T ss_pred CCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcch
Confidence 7899999999999999999999999999999998763
No 17
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=98.82 E-value=2.8e-08 Score=85.50 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=32.5
Q ss_pred cCcEEEEe-----CCChHHHHHHHHHhCCCeEEEeccCCC
Q 014044 344 TGYDIYLV-----WEPCVMCAMALVHQRIRRIFYAFPNPN 378 (432)
Q Consensus 344 ~g~tLYvT-----~EPC~MCa~Alv~srI~rVvyg~~~~~ 378 (432)
.++++|+| +|||.||+.+|.+.++++|+|...+++
T Consensus 64 ~~~~i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 64 YLVTWAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred eEEEEEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence 46899999 999999999999999999999998865
No 18
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.50 E-value=2.2e-07 Score=95.69 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=65.6
Q ss_pred cccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccc---cchhhcccccCCCCcEEEeeccHHHHHHHHHHHHH
Q 014044 342 LCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALG---SVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAA 418 (432)
Q Consensus 342 l~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~g---s~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~ 418 (432)
=..|-++|+|.|||.-|+-+|+.+||+|||+++ +++..+-| ....++. ..+++| .+++++||..++..|.+
T Consensus 42 gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~----~aGi~V-~~~l~~e~~~l~~~~~~ 115 (360)
T PRK14719 42 KINANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQ----SRGIKV-NNLIRKEIIKYSRGDLK 115 (360)
T ss_pred CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHH----HCCCEE-EeehHHHHHHHhHHhhh
Confidence 347899999999999999999999999999999 55553222 2255555 458999 67999999999997666
Q ss_pred H-------Hh-----------hCCCCccc
Q 014044 419 R-------TS-----------TTNTNATT 429 (432)
Q Consensus 419 R-------~~-----------~~~~~~~~ 429 (432)
+ .. +++||+|-
T Consensus 116 ~ie~~~~~~~~~~~~~~~~~~~~rP~V~l 144 (360)
T PRK14719 116 DIESLYPYISRRININSDLSDIMLPYVIS 144 (360)
T ss_pred cchhhhhhheeccccccccccCCCCeEEE
Confidence 5 66 78999874
No 19
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=98.27 E-value=6.5e-06 Score=78.75 Aligned_cols=35 Identities=23% Similarity=0.606 Sum_probs=32.5
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCC
Q 014044 343 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNP 377 (432)
Q Consensus 343 ~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~ 377 (432)
+.+++||+|+-||--|+..|+.+||+.|+|+....
T Consensus 150 ~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~ 184 (230)
T KOG3127|consen 150 VGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYY 184 (230)
T ss_pred cCCceEEEeecchHHHHHHHHHhhhhheeeccccc
Confidence 45699999999999999999999999999999874
No 20
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.12 E-value=1.9e-05 Score=68.84 Aligned_cols=57 Identities=19% Similarity=0.318 Sum_probs=40.8
Q ss_pred CCccccCcEEEEeCCChHHHHHHHHHhCC-------CeEEEeccCCCCCccccchhhcccccCCCCc
Q 014044 339 RPYLCTGYDIYLVWEPCVMCAMALVHQRI-------RRIFYAFPNPNEGALGSVHRLQGEKSLNHHY 398 (432)
Q Consensus 339 ~~yl~~g~tLYvT~EPC~MCa~Alv~srI-------~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~ 398 (432)
+.-+=.|..||+|+.||-||+..+.+... .+|+|+..++ |++.+... +...++++++
T Consensus 71 ~~~l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~--G~LardT~-L~r~g~e~r~ 134 (136)
T PF14439_consen 71 RRPLPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDP--GSLARDTQ-LRRRGWESRH 134 (136)
T ss_pred cCcCCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCC--CcchhHHH-HHHHhhhhcc
Confidence 44566899999999999999999999876 7899998875 44433322 2334445443
No 21
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=94.89 E-value=0.37 Score=42.67 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=14.8
Q ss_pred CCCccchHHHHHHHHHHh
Q 014044 263 WHPLRHAAIAAIQSSAAR 280 (432)
Q Consensus 263 ~~Pl~HA~M~AI~~vA~r 280 (432)
.+|..||++.||..+...
T Consensus 45 ~~~s~~AE~~Ai~~a~~~ 62 (127)
T TIGR01354 45 YPLTICAERSAIGKAISA 62 (127)
T ss_pred CCCCcCHHHHHHHHHHHc
Confidence 468999999999987653
No 22
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification]
Probab=55.28 E-value=0.64 Score=47.71 Aligned_cols=98 Identities=18% Similarity=0.230 Sum_probs=75.0
Q ss_pred cceEEcCCCCCCCCCCCCceeEEEEeeCchhHHHHHHHHhhccCCCCCCCccccccccccCCCcceeEEEEeecccCccc
Q 014044 4 WQIIHIPNKPAIPPNQQPTVNVFASMVEPKLANTIISRRLNQVAPLENLRHVKRIQKKFLEGGKTQLSMILCLADENDNR 83 (432)
Q Consensus 4 ~~~v~vp~~~~~~~~~~~lv~v~a~~I~~K~~~~li~r~L~~~~Pl~~L~HLKRvrk~~~~~g~~~L~viLc~~~~~~~~ 83 (432)
|+|.+.|.++.++|+-.+.+.++..-+..+...++- ..+..+.|+++.+|++||+|.....++..|+.|.+.....++.
T Consensus 1 ~~v~~pp~k~~~sp~~~~~~k~~~~~ls~~~~~ti~-~~~~~~~ple~kk~i~~v~~~~~~~~~~~l~hlkRv~~~~~d~ 79 (344)
T KOG2771|consen 1 TSVEEPPEKERKSPELEPRIKVIRSLLSTRFCETIP-VWSARAAPLEDKKVIGRVIKELSRELPESLRHLKRVRPYRKDG 79 (344)
T ss_pred CCccCCccccccCCCcCccchhcccccccccCCcch-hheeeecchHHHHHHHHHHHHhccCChHHHHHHHHhhhhcccC
Confidence 678899999999987778899999999999999998 8999999999999999999965534566777788877655554
Q ss_pred CCCchhhHHHHhhhccCCc
Q 014044 84 MNSLPQDVQELVNSYQLSP 102 (432)
Q Consensus 84 ~~~l~~~l~~lv~~~~l~~ 102 (432)
.....++++-+..++.++.
T Consensus 80 ~~~~~e~v~c~~~~~s~~~ 98 (344)
T KOG2771|consen 80 SSLILEDVLCLKSPESAEL 98 (344)
T ss_pred CcchhhhhhccCccchhhH
Confidence 4444444444444443333
No 23
>TIGR02214 spoVD_pbp stage V sporulation protein D. This model describes the spoVD subfamily of homologs of the cell division protein FtsI, a penicillin binding protein. This subfamily is restricted to Bacillus subtilis and related Gram-positive species with known or suspected endospore formation capability. In these species, the functional equivalent of FtsI is desginated PBP-2B, a paralog of spoVD.
Probab=39.12 E-value=46 Score=37.08 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=16.6
Q ss_pred eEEEEEcCCCCeeEEeec
Q 014044 170 NAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 170 ~~AViVDP~~~~iia~a~ 187 (432)
+++|++||.+|+|+|-+.
T Consensus 241 ga~Vvmd~~TG~ILAmas 258 (636)
T TIGR02214 241 VSIIVMNPKNGEILGMSN 258 (636)
T ss_pred EEEEEEECCCCeEEEEcc
Confidence 679999999999999886
No 24
>PRK15105 peptidoglycan synthase FtsI; Provisional
Probab=37.42 E-value=52 Score=36.41 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCeeEEeec
Q 014044 170 NAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 170 ~~AViVDP~~~~iia~a~ 187 (432)
+++|++||.+|+|+|-+.
T Consensus 259 ga~Vvmdp~TG~ILAmas 276 (578)
T PRK15105 259 GSAVLVDVNTGEVLAMAN 276 (578)
T ss_pred EEEEEEECCCCcEEEEec
Confidence 678999999999999886
No 25
>COG0768 FtsI Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]
Probab=36.34 E-value=56 Score=36.19 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCeeEEeecCcc
Q 014044 170 NAAVIVDPSIKQEIASACDQI 190 (432)
Q Consensus 170 ~~AViVDP~~~~iia~a~D~~ 190 (432)
+++|++||.+|+|+|-+..-.
T Consensus 268 g~~vv~dpktGeILAmas~P~ 288 (599)
T COG0768 268 GAAVVLDPKTGEILAMASSPS 288 (599)
T ss_pred eEEEEEeCCCCcEEEEecCCC
Confidence 678999999999999998543
No 26
>TIGR02074 PBP_1a_fam penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages.
Probab=34.51 E-value=64 Score=35.28 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCeeEEeec
Q 014044 169 VNAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~ 187 (432)
.+++|++||.+|+|+|.+.
T Consensus 256 ~~a~Vv~d~~TG~IlAmvg 274 (530)
T TIGR02074 256 QAALVAIDPDTGAVRALVG 274 (530)
T ss_pred ceeEEEEECCCCeEEEEEe
Confidence 4678999999999999776
No 27
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=29.32 E-value=39 Score=30.35 Aligned_cols=22 Identities=18% Similarity=0.530 Sum_probs=19.1
Q ss_pred CcEEEEeCCChHHHHHHHHHhC
Q 014044 345 GYDIYLVWEPCVMCAMALVHQR 366 (432)
Q Consensus 345 g~tLYvT~EPC~MCa~Alv~sr 366 (432)
-.+||+-+.||.-|...|-+.+
T Consensus 98 ~i~l~te~~pC~SC~~vi~qF~ 119 (133)
T PF14424_consen 98 TIDLFTELPPCESCSNVIEQFK 119 (133)
T ss_pred eEEEEecCCcChhHHHHHHHHH
Confidence 4799999999999999887754
No 28
>PF00905 Transpeptidase: Penicillin binding protein transpeptidase domain; InterPro: IPR001460 This signature identifies a large group of proteins, which include: Beta-lactamase precursor (3.5.2.6 from EC, penicillinase) Peptidoglycan synthetase ftsI (2.4.1.129 from EC, peptidoglycan glycosyltransferase 3) Methicillin resistance mecR1 protein Methicillin resistance blaR1 protein The large number of penicillin binding proteins, which are represented in this group of sequences, are responsible for the final stages of peptidoglycan biosynthesis for cell wall formation. The proteins synthesise cross-linked peptidoglycan from lipid intermediates, and contain a penicillin-sensitive transpeptidase carboxy-terminal domain. The active site serine (residue 337 in P14677 from SWISSPROT) is conserved in all members of this family []. MecR1 and BlaR1 are metallopeptidases belonging to MEROPS peptidase family M56, clan M-. BlaR1 and MecR1 cleave their cognate transcriptional repressors BlaI and MecI, respectively, activating the synthesis of MecA. MecR1 is present in Staphylococcus aureus and Staphylococcus sciuri, whereas BlaR1 (also known as BlaR, PenR1, or PenJ) has been found in Bacillus licheniformis, Staphylococcus epidermidis, Staphylococcus haemolyticus, and several S. aureus strains. These proteins are either plasmid-encoded, chromosomal, or transposon-mediated. MecR1/BlaR1 proteins are made up by homologous N-terminal 330-residue transmembrane metallopeptidase domains linked to extracellular 260-residue homologous PBP-like penicillin sensor moieties. ; GO: 0008658 penicillin binding, 0009273 peptidoglycan-based cell wall biogenesis; PDB: 3FWL_A 3VMA_A 2Z2M_E 2Z2L_E 1QME_A 1RP5_B 2ZC4_E 2ZC3_E 1QMF_A 3HBR_A ....
Probab=27.13 E-value=52 Score=32.58 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCeeEEeecCc
Q 014044 170 NAAVIVDPSIKQEIASACDQ 189 (432)
Q Consensus 170 ~~AViVDP~~~~iia~a~D~ 189 (432)
+++|++||.+|+|+|.+...
T Consensus 1 GavVv~d~~TG~IlA~~~~~ 20 (304)
T PF00905_consen 1 GAVVVMDPKTGEILAMVGGP 20 (304)
T ss_dssp EEEEEEETTTTBEEEEEEES
T ss_pred CEEEEEECCCCcEEEEEeCC
Confidence 47899999999999988743
No 29
>PRK10795 penicillin-binding protein 2; Provisional
Probab=23.57 E-value=80 Score=35.31 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCeeEEeec
Q 014044 170 NAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 170 ~~AViVDP~~~~iia~a~ 187 (432)
+++|++||.+|+|+|-+.
T Consensus 272 ga~Vvmdp~TGeILAmas 289 (634)
T PRK10795 272 AAVVVTDPRTGGILALVS 289 (634)
T ss_pred eEEEEEECCCCcEEEEEe
Confidence 679999999999999886
No 30
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=22.63 E-value=74 Score=31.00 Aligned_cols=18 Identities=28% Similarity=0.052 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHhhcccCC
Q 014044 269 AAIAAIQSSAARDRLLFP 286 (432)
Q Consensus 269 A~M~AI~~vA~r~r~~~p 286 (432)
+..+++|.+|+.+|++-+
T Consensus 25 eltR~~dalaa~RR~LP~ 42 (211)
T PF05988_consen 25 ELTRARDALAAERRRLPM 42 (211)
T ss_pred HHHHHHHHHHHHHhhCCC
Confidence 457889999988886543
No 31
>TIGR03423 pbp2_mrdA penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape).
Probab=20.77 E-value=94 Score=34.31 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCeeEEeec
Q 014044 170 NAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 170 ~~AViVDP~~~~iia~a~ 187 (432)
+++|++||.+|+|+|-+.
T Consensus 249 ga~Vvmdp~TG~ILAmas 266 (592)
T TIGR03423 249 GAVVVMDPRTGEILAMVS 266 (592)
T ss_pred ceEEEEECCCCcEEEEEc
Confidence 579999999999999887
Done!