Query 014044
Match_columns 432
No_of_seqs 242 out of 1239
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 04:29:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx8_A TRNA-specific adenosine 100.0 2.9E-31 1E-35 245.7 15.2 149 148-424 14-164 (179)
2 1z3a_A TRNA-specific adenosine 100.0 3.2E-30 1.1E-34 236.4 16.7 147 151-425 10-158 (168)
3 2b3j_A TRNA adenosine deaminas 100.0 5.4E-30 1.9E-34 232.8 16.7 147 150-424 7-155 (159)
4 3dh1_A TRNA-specific adenosine 100.0 1.8E-30 6.3E-35 242.2 11.3 157 148-426 24-184 (189)
5 2a8n_A Cytidine and deoxycytid 100.0 6.4E-30 2.2E-34 228.5 14.0 138 151-416 5-144 (144)
6 1wwr_A TRNA adenosine deaminas 100.0 5.1E-29 1.8E-33 229.1 16.1 143 151-422 24-168 (171)
7 1wkq_A Guanine deaminase; doma 100.0 1E-28 3.5E-33 225.7 8.2 143 150-421 11-160 (164)
8 2g84_A Cytidine and deoxycytid 99.9 5.9E-28 2E-32 226.6 12.6 147 151-420 29-183 (197)
9 1p6o_A Cytosine deaminase; hyd 99.9 1E-25 3.4E-30 205.2 11.0 134 151-419 15-150 (161)
10 2hxv_A Diaminohydroxyphosphori 99.9 2E-23 6.8E-28 211.8 14.9 144 147-429 11-164 (360)
11 2b3z_A Riboflavin biosynthesis 99.9 9.5E-23 3.3E-27 207.7 13.9 83 343-429 74-162 (373)
12 2g6v_A Riboflavin biosynthesis 99.9 2.8E-22 9.7E-27 206.1 12.1 83 343-429 90-178 (402)
13 1vq2_A DCMP deaminase, deoxycy 99.8 2E-20 6.8E-25 174.6 9.3 65 341-412 118-182 (193)
14 2hvw_A Deoxycytidylate deamina 99.8 6.1E-20 2.1E-24 170.5 10.6 136 150-407 42-178 (184)
15 2w4l_A DCMP deaminse, deoxycyt 99.8 3.5E-20 1.2E-24 171.3 3.6 73 341-419 93-166 (178)
16 3g8q_A Predicted RNA-binding p 99.5 7.8E-15 2.7E-19 139.5 8.8 36 343-378 55-90 (278)
17 2nyt_A Probable C->U-editing e 99.4 3.1E-13 1.1E-17 126.0 8.6 77 344-428 83-170 (190)
18 1uwz_A Cytidine deaminase; CDD 98.4 1.8E-06 6E-11 76.2 10.3 37 151-189 4-43 (136)
19 2fr5_A Cytidine deaminase; tet 97.8 0.00017 5.7E-09 64.4 11.8 25 342-366 81-110 (146)
20 2z3g_A Blasticidin-S deaminase 97.6 0.00097 3.3E-08 58.2 12.4 36 151-188 8-45 (130)
21 3b8f_A Putative blasticidin S 95.7 0.056 1.9E-06 47.6 9.5 36 151-189 5-42 (142)
22 1r5t_A Cytidine deaminase; zin 93.7 0.71 2.4E-05 40.5 11.6 37 150-188 11-50 (142)
23 3r2n_A Cytidine deaminase; str 91.4 1.3 4.5E-05 38.8 10.1 20 352-372 90-110 (138)
24 2d30_A Cytidine deaminase; pur 90.4 2.1 7.1E-05 37.6 10.4 15 352-366 92-106 (141)
25 1ctt_A Cytidine deaminase; hyd 80.1 16 0.00056 35.6 12.0 25 343-367 257-285 (294)
26 3v4k_A DNA DC->DU-editing enzy 67.8 5.2 0.00018 37.2 4.6 21 345-365 101-121 (203)
27 3mpz_A Cytidine deaminase; ssg 62.6 51 0.0017 29.1 9.8 20 352-371 105-125 (150)
28 3vow_A Probable DNA DC->DU-edi 57.7 8.3 0.00028 35.5 3.9 32 345-376 87-123 (190)
29 1ctt_A Cytidine deaminase; hyd 55.0 34 0.0012 33.4 8.0 20 347-366 121-140 (294)
30 3un7_A PBPA, penicillin-bindin 45.1 22 0.00074 36.4 5.1 19 169-187 130-148 (462)
31 3ue3_A Septum formation, penic 40.0 27 0.00093 36.8 5.1 19 169-187 232-250 (554)
32 3equ_A PBP-2, penicillin-bindi 39.9 28 0.00095 36.5 5.1 20 169-188 223-242 (542)
33 3pbt_A Penicillin-binding prot 37.6 32 0.0011 36.1 5.1 19 169-187 205-223 (538)
34 1qme_A Penicillin-binding prot 31.0 38 0.0013 36.5 4.4 19 169-187 240-258 (702)
35 2y2m_A PBP1B, penicillin-bindi 24.5 95 0.0033 32.1 5.9 21 168-188 123-143 (494)
36 2v2f_F Penicillin binding prot 22.9 84 0.0029 31.1 5.0 20 169-188 65-84 (390)
No 1
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=99.97 E-value=2.9e-31 Score=245.67 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCC
Q 014044 148 QSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT 225 (432)
Q Consensus 148 ~~~~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 225 (432)
.....||+.|+++|+.+ .|..++|||||+ .|+||+.|++.+.
T Consensus 14 ~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~--~g~Ii~~G~N~~~---------------------------------- 57 (179)
T 2nx8_A 14 EEQTYFMQEALKESEKSLQKAEIPIGCVIVK--DGEIIGRGHNARE---------------------------------- 57 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCCEEEEEEE--CCEEEEEEECCCC----------------------------------
Confidence 34567999999999864 567788999997 7999999997653
Q ss_pred CCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCC
Q 014044 226 SLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTS 305 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~ 305 (432)
...+|+.||+|.||..++++.
T Consensus 58 -----------------------------------~~~d~t~HAE~~AI~~a~~~~------------------------ 78 (179)
T 2nx8_A 58 -----------------------------------ESNQAIMHAEMMAINEANAHE------------------------ 78 (179)
T ss_dssp -----------------------------------HHTCTTCCHHHHHHHHHHHHH------------------------
T ss_pred -----------------------------------CcCCCccCHHHHHHHHHHHHc------------------------
Confidence 123689999999999987653
Q ss_pred CCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccc
Q 014044 306 IGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385 (432)
Q Consensus 306 ~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~ 385 (432)
+.|+++|+|||||+|||+||++||+|+||+|||||..+++.|+.|+.
T Consensus 79 ---------------------------------~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~~ 125 (179)
T 2nx8_A 79 ---------------------------------GNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSL 125 (179)
T ss_dssp ---------------------------------TSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTTS
T ss_pred ---------------------------------CCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCcccccH
Confidence 24788999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCC
Q 014044 386 HRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTN 424 (432)
Q Consensus 386 ~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~ 424 (432)
+.++....+||+++|++|++++||.+|+..|..+..+++
T Consensus 126 ~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~ 164 (179)
T 2nx8_A 126 YQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERK 164 (179)
T ss_dssp CCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999998899999999999999999999999887655443
No 2
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.97 E-value=3.2e-30 Score=236.41 Aligned_cols=147 Identities=24% Similarity=0.356 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 228 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 228 (432)
..||+.|+++|+.+ .|..++|||||+ .|+||+.|++...
T Consensus 10 ~~~M~~A~~~A~~a~~~~~~pVGAviV~--~g~Ii~~G~N~~~------------------------------------- 50 (168)
T 1z3a_A 10 EYWMRHALTLAKRAWDEREVPVGAVLVH--NNRVIGEGWNRPI------------------------------------- 50 (168)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEEE--CCEEEEEEEcccc-------------------------------------
Confidence 46899999999864 467788999995 7999999987643
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 308 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (432)
...+|+.||+|.||..++.+.
T Consensus 51 --------------------------------~~~d~t~HAE~~Ai~~a~~~~--------------------------- 71 (168)
T 1z3a_A 51 --------------------------------GRHDPTAHAEIMALRQGGLVM--------------------------- 71 (168)
T ss_dssp --------------------------------HHTCTTCCHHHHHHHHHHHHH---------------------------
T ss_pred --------------------------------cCCCcchhHHHHHHHHHHHHc---------------------------
Confidence 123689999999999987643
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 014044 309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388 (432)
Q Consensus 309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l 388 (432)
+.|+++|+|||+|+|||+||++||+|+||+||||+.++++.|+.|+.+++
T Consensus 72 ------------------------------~~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~ 121 (168)
T 1z3a_A 72 ------------------------------QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 121 (168)
T ss_dssp ------------------------------TSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBC
T ss_pred ------------------------------CCCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccchhHHH
Confidence 24778999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCC
Q 014044 389 QGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNT 425 (432)
Q Consensus 389 ~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~~ 425 (432)
+..+.+||+++|++|++++||.+|+..|..++.+++.
T Consensus 122 l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~~ 158 (168)
T 1z3a_A 122 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIK 158 (168)
T ss_dssp TTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTCC
T ss_pred hhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhccc
Confidence 9989999999999999999999999999887666543
No 3
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.97 E-value=5.4e-30 Score=232.77 Aligned_cols=147 Identities=27% Similarity=0.360 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCC
Q 014044 150 IFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSL 227 (432)
Q Consensus 150 ~~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 227 (432)
...||+.|+++|+.+ .|..++|||||+ .|+||+.|++.+.
T Consensus 7 d~~~m~~A~~~A~~a~~~~~~pVGAviv~--~g~Ii~~G~N~~~------------------------------------ 48 (159)
T 2b3j_A 7 DIYFMTLAIEEAKKAAQLGEVPIGAIITK--DDEVIARAHNLRE------------------------------------ 48 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH------------------------------------
T ss_pred HHHHHHHHHHHHHHhhcCCCCCEEEEEEE--CCEEEEEEECCCC------------------------------------
Confidence 456899999999864 467788999998 7999999997653
Q ss_pred CCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 228 PPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIG 307 (432)
Q Consensus 228 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~ 307 (432)
...+|+.||+|.||..++.+..
T Consensus 49 ---------------------------------~~~~~~~HAE~~Ai~~a~~~~~------------------------- 70 (159)
T 2b3j_A 49 ---------------------------------TLQQPTAHAEHIAIERAAKVLG------------------------- 70 (159)
T ss_dssp ---------------------------------HHTCTTCCHHHHHHHHHHHHHT-------------------------
T ss_pred ---------------------------------CCCCCccCHHHHHHHHHHHHcC-------------------------
Confidence 1236899999999999877532
Q ss_pred CcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchh
Q 014044 308 TPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHR 387 (432)
Q Consensus 308 ~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~ 387 (432)
.|.++|+|||+|+|||+||++||+|+||+||||+.++++.|+.|+.++
T Consensus 71 --------------------------------~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~ 118 (159)
T 2b3j_A 71 --------------------------------SWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMN 118 (159)
T ss_dssp --------------------------------SSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTTSCB
T ss_pred --------------------------------CCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccHHHH
Confidence 377899999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCC
Q 014044 388 LQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTN 424 (432)
Q Consensus 388 l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~ 424 (432)
++..+.+||+++|++|++++||.+|+..|..+..+++
T Consensus 119 ~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 155 (159)
T 2b3j_A 119 LLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155 (159)
T ss_dssp TTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC-
T ss_pred HHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9998899999999999999999999999887755543
No 4
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.8e-30 Score=242.21 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCC
Q 014044 148 QSIFSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHT 225 (432)
Q Consensus 148 ~~~~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 225 (432)
.....||+.|+++|+.+ .|..++|||||+ .|+||+.|.+.+.
T Consensus 24 ~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV~--~g~IIa~G~N~~~---------------------------------- 67 (189)
T 3dh1_A 24 EETEKWMEEAMHMAKEALENTEVPVGCLMVY--NNEVVGKGRNEVN---------------------------------- 67 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhCCCCCEEEEEEE--CCEEEEEEeCCCC----------------------------------
Confidence 34677999999999864 677889999997 7999999987543
Q ss_pred CCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCC
Q 014044 226 SLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTS 305 (432)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~ 305 (432)
...+|+.||+|.||..++++.+..
T Consensus 68 -----------------------------------~~~~~t~HAEi~AI~~a~~~~~~~--------------------- 91 (189)
T 3dh1_A 68 -----------------------------------QTKNATRHAEMVAIDQVLDWCRQS--------------------- 91 (189)
T ss_dssp -----------------------------------HHTCTTCCHHHHHHHHHHHHHHHH---------------------
T ss_pred -----------------------------------ccCCCcCcHHHHHHHHHHHHHhhc---------------------
Confidence 123589999999999998764310
Q ss_pred CCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccc
Q 014044 306 IGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSV 385 (432)
Q Consensus 306 ~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~ 385 (432)
.....|++.|||||||+|||+||++||+|+||+|||||..++..|+.|+.
T Consensus 92 ------------------------------~~~~~~~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~gg~g~~ 141 (189)
T 3dh1_A 92 ------------------------------GKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSV 141 (189)
T ss_dssp ------------------------------CCCHHHHHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTBTBTTS
T ss_pred ------------------------------CcccccccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCccccccc
Confidence 00123789999999999999999999999999999999999999999988
Q ss_pred hhhccc--ccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCCC
Q 014044 386 HRLQGE--KSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTN 426 (432)
Q Consensus 386 ~~l~~~--~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~~~ 426 (432)
+.++.. ...+|+++|+.|++++||.+|+..|..+..++.|.
T Consensus 142 ~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~~~~~~P~ 184 (189)
T 3dh1_A 142 LNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAPK 184 (189)
T ss_dssp CBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC-------
T ss_pred ccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHHhcCCCCC
Confidence 887754 34578899999999999999999999988877774
No 5
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.96 E-value=6.4e-30 Score=228.52 Aligned_cols=138 Identities=28% Similarity=0.353 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 228 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 228 (432)
..||+.|+++|+.+ .|..++|||||+ .|+||+.|++...
T Consensus 5 ~~~m~~A~~~A~~a~~~~~~~VGAviv~--~g~Ii~~G~N~~~------------------------------------- 45 (144)
T 2a8n_A 5 THFMELALVEARSAGERDEVPIGAVLVL--DGRVIARSGNRTR------------------------------------- 45 (144)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEEEEE--CCEEEEEEECCCC-------------------------------------
Confidence 46899999998863 467788999998 7999999997653
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 308 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (432)
...+|+.||+|.||..++++..
T Consensus 46 --------------------------------~~~~~~~HAE~~Ai~~a~~~~~-------------------------- 67 (144)
T 2a8n_A 46 --------------------------------ELNDVTAHAEIAVIRMACEALG-------------------------- 67 (144)
T ss_dssp --------------------------------HHTCTTCCHHHHHHHHHHHHHT--------------------------
T ss_pred --------------------------------CCCCCcCCHHHHHHHHHHHHcC--------------------------
Confidence 1236899999999999987532
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 014044 309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388 (432)
Q Consensus 309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l 388 (432)
.|+++|+|||+|+|||+||++||+|+||+||||+.++++.|+.|+.+++
T Consensus 68 -------------------------------~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~ 116 (144)
T 2a8n_A 68 -------------------------------QERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRF 116 (144)
T ss_dssp -------------------------------CSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCG
T ss_pred -------------------------------CCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccchHHHH
Confidence 3678999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHH
Q 014044 389 QGEKSLNHHYAVFRVLLPKEILNKNEVV 416 (432)
Q Consensus 389 ~~~~~lnh~~~V~~gvl~eEa~~l~~~~ 416 (432)
+..+.+||+++|++|++++||.+|+..|
T Consensus 117 ~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 117 FSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp GGSTTCCCCCEEEEC-------------
T ss_pred HhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 9988999999999999999999999876
No 6
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.96 E-value=5.1e-29 Score=229.08 Aligned_cols=143 Identities=25% Similarity=0.365 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 228 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 228 (432)
..||+.|+++|+.+ .|..++|||||+ +|+||+.|.+...
T Consensus 24 ~~~M~~A~~~A~~a~~~~~~pVGAvIV~--dg~Ii~~G~N~~~------------------------------------- 64 (171)
T 1wwr_A 24 EYFLKVALREAKRAFEKGEVPVGAIIVK--EGEIISKAHNSVE------------------------------------- 64 (171)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEE--TTEEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEEEE--CCEEEEEEECCCC-------------------------------------
Confidence 56899999998864 467788999998 7999999997653
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 308 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (432)
...+|+.||+|.||..++++..
T Consensus 65 --------------------------------~~~d~t~HAE~~AI~~a~~~~g-------------------------- 86 (171)
T 1wwr_A 65 --------------------------------ELKDPTAHAEMLAIKEACRRLN-------------------------- 86 (171)
T ss_dssp --------------------------------HHTCTTCCHHHHHHHHHHHHHT--------------------------
T ss_pred --------------------------------ccCCcccCHHHHHHHHHHHHcC--------------------------
Confidence 1236899999999999877532
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 014044 309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388 (432)
Q Consensus 309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l 388 (432)
.|.++|+|||+|+|||+||++||+|+||+||||+..+++.|+.|+.+++
T Consensus 87 -------------------------------~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~ 135 (171)
T 1wwr_A 87 -------------------------------TKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVSVFNI 135 (171)
T ss_dssp -------------------------------CSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCG
T ss_pred -------------------------------CCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccchHHHH
Confidence 3678999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHHHHHHhh
Q 014044 389 QGEKSLNHHYAVFRVLLPKEILNKNEVVAARTST 422 (432)
Q Consensus 389 ~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~ 422 (432)
+..+.+||+++|++ ++++||.+|+..|..+..+
T Consensus 136 l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 136 LDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp GGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred HhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 99889999999999 9999999999998876543
No 7
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.95 E-value=1e-28 Score=225.67 Aligned_cols=143 Identities=24% Similarity=0.276 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHcC--CC-CcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCC
Q 014044 150 IFSFMKSAVELAQSG--DG-SIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTS 226 (432)
Q Consensus 150 ~~~~m~~A~e~a~~g--~g-~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 226 (432)
...||+.|+++|+.+ .| ..++|||||+ .|+||+.|.+.+.
T Consensus 11 ~~~~M~~Al~~A~~a~~~g~~~pVGAVIV~--~g~Ii~~G~N~~~----------------------------------- 53 (164)
T 1wkq_A 11 HETFLKRAVTLACEGVNAGIGGPFGAVIVK--DGAIIAEGQNNVT----------------------------------- 53 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCEEEEEE--TTEEEEEEECCHH-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEEE--CCEEEEEEecCCc-----------------------------------
Confidence 356899999999864 45 6678899995 7999999987653
Q ss_pred CCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCC
Q 014044 227 LPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSI 306 (432)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~ 306 (432)
...+|+.||+|.||..++++.
T Consensus 54 ----------------------------------~~~d~~~HAE~~AI~~a~~~~------------------------- 74 (164)
T 1wkq_A 54 ----------------------------------TSNDPTAHAEVTAIRKACKVL------------------------- 74 (164)
T ss_dssp ----------------------------------HHTCTTCCHHHHHHHHHHHHH-------------------------
T ss_pred ----------------------------------CCCCcccCHHHHHHHHHHHHc-------------------------
Confidence 123689999999999988653
Q ss_pred CCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccc---
Q 014044 307 GTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALG--- 383 (432)
Q Consensus 307 ~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~g--- 383 (432)
+.|.++|+|||||+|||+||++||+|+||+||||+.++++.|+.|
T Consensus 75 --------------------------------~~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~ 122 (164)
T 1wkq_A 75 --------------------------------GAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEAGFDD 122 (164)
T ss_dssp --------------------------------TSSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCSH
T ss_pred --------------------------------CCCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCccccCcch
Confidence 247789999999999999999999999999999999999999988
Q ss_pred -cchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHHh
Q 014044 384 -SVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTS 421 (432)
Q Consensus 384 -s~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~ 421 (432)
+.++++..+..++++.| .|++++||.+|++.|.++..
T Consensus 123 ~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~~ 160 (164)
T 1wkq_A 123 SFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFAN 160 (164)
T ss_dssp HHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCTT
T ss_pred HHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhccC
Confidence 77788776777888877 77999999999999987643
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.95 E-value=5.9e-28 Score=226.56 Aligned_cols=147 Identities=18% Similarity=0.114 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 228 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 228 (432)
..||+.|+++|+.+ .|..+.||||||+.+|+||+.|.+.+.
T Consensus 29 ~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~------------------------------------- 71 (197)
T 2g84_A 29 EARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVV------------------------------------- 71 (197)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTT-------------------------------------
T ss_pred HHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCC-------------------------------------
Confidence 45899999998864 345667999999887999999987543
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 308 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (432)
...+|+.||+|+||+.++++... |
T Consensus 72 --------------------------------~~~~~~~HAE~~Ai~~a~~~~~~-----------~------------- 95 (197)
T 2g84_A 72 --------------------------------PGRCSAAHAEILALSLAQAKLDT-----------H------------- 95 (197)
T ss_dssp --------------------------------TTTCTTCCHHHHHHHHHHHHHTC-----------S-------------
T ss_pred --------------------------------ccCCCccCHHHHHHHHHHHHcCC-----------c-------------
Confidence 12368999999999998875420 0
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 014044 309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388 (432)
Q Consensus 309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l 388 (432)
++ .+..|+|+|||||+|||+||++||+|+||+|||||..+++.++.|. +.
T Consensus 96 -------------------------~L---~~~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~--~~ 145 (197)
T 2g84_A 96 -------------------------DL---SADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGF--DE 145 (197)
T ss_dssp -------------------------CT---TCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTC--CC
T ss_pred -------------------------cc---cccCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCc--cc
Confidence 00 0125789999999999999999999999999999999998887762 22
Q ss_pred ccc------ccCCCCcEEEeeccHHHHHHHHHHHHHHH
Q 014044 389 QGE------KSLNHHYAVFRVLLPKEILNKNEVVAART 420 (432)
Q Consensus 389 ~~~------~~lnh~~~V~~gvl~eEa~~l~~~~~~R~ 420 (432)
... ...+|+++|++|++++||.+|+..|..+.
T Consensus 146 ~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~~~~ 183 (197)
T 2g84_A 146 GPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 183 (197)
T ss_dssp CCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHhcCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 211 11268999999999999999999998864
No 9
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.92 E-value=1e-25 Score=205.18 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 228 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 228 (432)
..||+.|+++|+.+ .|..++||||||...|+||+.|++.+.
T Consensus 15 ~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~------------------------------------- 57 (161)
T 1p6o_A 15 QKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRF------------------------------------- 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHH-------------------------------------
T ss_pred HHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCC-------------------------------------
Confidence 45899999998864 456778999998778999999987543
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 308 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (432)
...+|+.||+|.||..+++.
T Consensus 58 --------------------------------~~~~~t~HAE~~Ai~~a~~~---------------------------- 77 (161)
T 1p6o_A 58 --------------------------------QKGSATLHGEISTLENCGRL---------------------------- 77 (161)
T ss_dssp --------------------------------HHTCSSCCHHHHHHHHHCSC----------------------------
T ss_pred --------------------------------CCCCcccCHHHHHHHHHHHh----------------------------
Confidence 12368999999999976421
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 014044 309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388 (432)
Q Consensus 309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l 388 (432)
+.+.++|+|||+|+|||+||++||+|+||+||||+..++..| +...+
T Consensus 78 ------------------------------~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g---~~~~~ 124 (161)
T 1p6o_A 78 ------------------------------EGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS---KGEKY 124 (161)
T ss_dssp ------------------------------CHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC---THHHH
T ss_pred ------------------------------CCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc---cHHHH
Confidence 135678999999999999999999999999999999988754 33455
Q ss_pred cccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 014044 389 QGEKSLNHHYAVFRVLLPKEILNKNEVVAAR 419 (432)
Q Consensus 389 ~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R 419 (432)
+. +|+++|.. ++++||.+|++.|.++
T Consensus 125 l~----~~gi~v~~-~~~~e~~~l~~~f~~~ 150 (161)
T 1p6o_A 125 LQ----TRGHEVVV-VDDERCKKIMKQFIDE 150 (161)
T ss_dssp HH----HTTCEEEE-CCCHHHHHHHHHHHHH
T ss_pred HH----hcCCEEEE-ecHHHHHHHHHHHHHh
Confidence 54 47899987 9999999999998765
No 10
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.90 E-value=2e-23 Score=211.84 Aligned_cols=144 Identities=23% Similarity=0.254 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHcCC----CCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCC
Q 014044 147 SQSIFSFMKSAVELAQSGD----GSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGES 222 (432)
Q Consensus 147 ~~~~~~~m~~A~e~a~~g~----g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 222 (432)
-..|..||+.|+++|+.+. +..++|||||+ .|+||+.|.+..
T Consensus 11 ~~~~~~~m~~al~lA~~~~~~~~~~~~vGaviv~--~g~ii~~g~n~~-------------------------------- 56 (360)
T 2hxv_A 11 HHMYETFMKRAIELAKKGLGRVNPNPPVGAVVVK--DGRIIAEGFHPY-------------------------------- 56 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEE--TTEEEEEEECCS--------------------------------
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCCEEEEEEE--CCEEEEEEeCCC--------------------------------
Confidence 4467789999999999753 56678999997 799999997532
Q ss_pred CCCCCCCCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCC
Q 014044 223 NHTSLPPNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQ 302 (432)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~ 302 (432)
.+..||+|.||.++++ .
T Consensus 57 -----------------------------------------~~~~HAE~~Ai~~a~~--~-------------------- 73 (360)
T 2hxv_A 57 -----------------------------------------FGGPHAERMAIESARK--K-------------------- 73 (360)
T ss_dssp -----------------------------------------TTSCCHHHHHHHHHHH--T--------------------
T ss_pred -----------------------------------------CCCcCHHHHHHHHHHh--c--------------------
Confidence 2467999999998863 1
Q ss_pred CCCCCCcccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccC
Q 014044 303 PTSIGTPAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPN 376 (432)
Q Consensus 303 ~~~~~~~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~ 376 (432)
+..+.|||||||+||| +||++||+++||+||||+..+
T Consensus 74 -------------------------------------~~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d 116 (360)
T 2hxv_A 74 -------------------------------------GEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRD 116 (360)
T ss_dssp -------------------------------------TCCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECC
T ss_pred -------------------------------------CCCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecC
Confidence 1247899999999999 799999999999999999999
Q ss_pred CCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHHHhhCCCCccc
Q 014044 377 PNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAARTSTTNTNATT 429 (432)
Q Consensus 377 ~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R~~~~~~~~~~ 429 (432)
++. ..|+.+.++. +++++|..|++++||.+|+..|..|..+++||++-
T Consensus 117 ~~~-~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~l 164 (360)
T 2hxv_A 117 PNP-VSGNGVEKFR----NHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVAL 164 (360)
T ss_dssp CCG-GGCCHHHHHH----TTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEE
T ss_pred chh-hhhhHHHHHH----hCCcEEEECCccccchhccceeeeccccchhhhee
Confidence 987 6676677665 56899999999999999999999999999999863
No 11
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.88 E-value=9.5e-23 Score=207.74 Aligned_cols=83 Identities=27% Similarity=0.354 Sum_probs=76.4
Q ss_pred ccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014044 343 CTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 416 (432)
Q Consensus 343 ~~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~ 416 (432)
+.|+|||||+||| +||++||+++||+||||+..+++.+..|+.+.++. +++++|+.|++++||.+|+..|
T Consensus 74 ~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~----~~gi~v~~g~l~~e~~~l~~~f 149 (373)
T 2b3z_A 74 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMK----EAGIEVREGILADQAERLNEKF 149 (373)
T ss_dssp GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHH----TTTCEEEECTTHHHHHHHTHHH
T ss_pred cCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHH----hCCeEEEeCCccccccccccee
Confidence 5799999999999 79999999999999999999999888887777765 4789999999999999999999
Q ss_pred HHHHhhCCCCccc
Q 014044 417 AARTSTTNTNATT 429 (432)
Q Consensus 417 ~~R~~~~~~~~~~ 429 (432)
..+..+++|+++-
T Consensus 150 ~~~~~~~rP~V~l 162 (373)
T 2b3z_A 150 LHFMRTGLPYVTL 162 (373)
T ss_dssp HHHHHHSSCEEEE
T ss_pred eeeccccchhhee
Confidence 9999999999864
No 12
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.87 E-value=2.8e-22 Score=206.15 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=74.6
Q ss_pred ccCcEEEEeCCCh------HHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014044 343 CTGYDIYLVWEPC------VMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 416 (432)
Q Consensus 343 ~~g~tLYvT~EPC------~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~ 416 (432)
+.|+|||||+||| +||++||+|+||+||||+..+++.+..|....++. +++++|..|++++||.+|+..|
T Consensus 90 ~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~----~~gi~v~~g~l~~e~~~l~~~f 165 (402)
T 2g6v_A 90 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ----QAGIDVSHGLMMSEAEQLNKGF 165 (402)
T ss_dssp GGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHH----HTTCCEEECTTTTHHHHHTHHH
T ss_pred cCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccchHHHHHH----hCCcEEEeCCcchhhHHHhhhh
Confidence 5899999999999 79999999999999999999998877776666665 4689999999999999999999
Q ss_pred HHHHhhCCCCccc
Q 014044 417 AARTSTTNTNATT 429 (432)
Q Consensus 417 ~~R~~~~~~~~~~ 429 (432)
..|..+++||++-
T Consensus 166 ~~~~~~~rP~V~~ 178 (402)
T 2g6v_A 166 LKRMRTGFPYIQL 178 (402)
T ss_dssp HHHHHSSSCEEEE
T ss_pred hhccccccchhee
Confidence 9999999999863
No 13
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.82 E-value=2e-20 Score=174.58 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=51.9
Q ss_pred ccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhhcccccCCCCcEEEeeccHHHHHHH
Q 014044 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNK 412 (432)
Q Consensus 341 yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l 412 (432)
+.+.|+|||||+|||+||+++|+++||+||||+.+++..++ .+..++... +++|+. +..+++.++
T Consensus 118 ~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~~--~~~~~l~~a----GI~v~~-~~~~~~~~~ 182 (193)
T 1vq2_A 118 SSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP--GWDDILRNA----GIEVFN-VPKKNLNKL 182 (193)
T ss_dssp CCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCCT--TTTHHHHHT----TCEEEE-CCGGGCCSS
T ss_pred CCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcch--HHHHHHHHC----CCEEEE-eCHHHHHHh
Confidence 34689999999999999999999999999999988887653 335666643 688887 676666543
No 14
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.81 E-value=6.1e-20 Score=170.52 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHcC-CCCcceEEEEEcCCCCeeEEeecCcccccccccccccccccCCCccccccccccCCCCCCCCCC
Q 014044 150 IFSFMKSAVELAQSG-DGSIVNAAVIVDPSIKQEIASACDQICCCSISTEKNSLESCSEQPEVLSSDLFSNGESNHTSLP 228 (432)
Q Consensus 150 ~~~~m~~A~e~a~~g-~g~~~~~AViVDP~~~~iia~a~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 228 (432)
...||+.|+++|+.+ .+..++|||||+ .|+||+.|.+...... .+|..
T Consensus 42 de~~M~~A~~~A~~s~~~~~~VGAVIV~--dg~Iia~G~N~~~~~~--------~~c~d--------------------- 90 (184)
T 2hvw_A 42 QDYFMANAELISKRSTCNRAYVGAVLVK--NNRIIATGYNGGVADT--------DNCDD--------------------- 90 (184)
T ss_dssp HHHHHHHHHHHGGGCCCTTCCCEEEEEE--TTEEEEEEECEESTTS--------CCHHH---------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEEE--CCEEEEEEECCCcccc--------ccccc---------------------
Confidence 356899999999975 566778899997 7999999998653100 00000
Q ss_pred CCCCCcccccccCCcccCCcccccccCCCCCCCCCCCccchHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCCCCCC
Q 014044 229 PNDFPSETRKSYSGVSCLNPWQWAQENSHTTSCYWHPLRHAAIAAIQSSAARDRLLFPGMGHEGDKPNGVHTIQPTSIGT 308 (432)
Q Consensus 229 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~Pl~HA~M~AI~~vA~r~r~~~p~~~~~~~~~~~~~~~~~~~~~~ 308 (432)
.-|. .++...+|..||+|.||..++++
T Consensus 91 --------------~g~~-----------~~~~~~~~t~HAE~~AI~~A~~~---------------------------- 117 (184)
T 2hvw_A 91 --------------VGHE-----------MEDGHCIRTVHAEMNALIQCAKE---------------------------- 117 (184)
T ss_dssp --------------HCCC-----------EETTEECSEECHHHHHHHHHHHH----------------------------
T ss_pred --------------cccc-----------ccccccCCccCHHHHHHHHHHHc----------------------------
Confidence 0000 00123468999999999988652
Q ss_pred cccccccccccccCcccCCCCCCCCCCCCCCCccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCCCCccccchhh
Q 014044 309 PAKRQKTDLANVENSEELDPSAGGFHPESARPYLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPNEGALGSVHRL 388 (432)
Q Consensus 309 ~~kr~k~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~~g~~gs~~~l 388 (432)
++.+.|+|||+|+|||+||++||+|+||+||||+..++.... ...+
T Consensus 118 -------------------------------g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~~---~~~~ 163 (184)
T 2hvw_A 118 -------------------------------GISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHPF---AIEL 163 (184)
T ss_dssp -------------------------------TCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCHH---HHHH
T ss_pred -------------------------------CCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCHH---HHHH
Confidence 135789999999999999999999999999999999876432 1345
Q ss_pred cccccCCCCcEEEeeccHH
Q 014044 389 QGEKSLNHHYAVFRVLLPK 407 (432)
Q Consensus 389 ~~~~~lnh~~~V~~gvl~e 407 (432)
+.. .+++|..+++++
T Consensus 164 L~~----aGIeV~~~~~~~ 178 (184)
T 2hvw_A 164 MTQ----KEVEYVQHDVPR 178 (184)
T ss_dssp HHH----HTCEEEECCCCC
T ss_pred HHH----CCCEEEEecchh
Confidence 543 368888877654
No 15
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.5e-20 Score=171.29 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=51.0
Q ss_pred ccccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCC-CCCccccchhhcccccCCCCcEEEeeccHHHHHHHHHHHHHH
Q 014044 341 YLCTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNP-NEGALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVVAAR 419 (432)
Q Consensus 341 yl~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~-~~g~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~~~R 419 (432)
+.+.|+|||||+|||.||++||+++||+||||+.... +.........++.. .+++|.. +++|+.+|+..|..+
T Consensus 93 ~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~----aGI~V~~--~~~~~~~l~~~f~~~ 166 (178)
T 2w4l_A 93 TDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNM----AGVTFRK--FIPKCSKIVIDFDSI 166 (178)
T ss_dssp -CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHH----HTCEEEE--CCCSCSEEEEEGGGC
T ss_pred CCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHH----CCCEEEE--ccHHHHHHHHHHHhh
Confidence 4567999999999999999999999999999998722 22111112345543 3677766 667777766655444
No 16
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.55 E-value=7.8e-15 Score=139.53 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=33.5
Q ss_pred ccCcEEEEeCCChHHHHHHHHHhCCCeEEEeccCCC
Q 014044 343 CTGYDIYLVWEPCVMCAMALVHQRIRRIFYAFPNPN 378 (432)
Q Consensus 343 ~~g~tLYvT~EPC~MCa~Alv~srI~rVvyg~~~~~ 378 (432)
+.|||||+|+|||+||++||+|+||+||||+.....
T Consensus 55 L~GaTLYVTLEPC~MCAgAII~AGIkRVVYGa~~~G 90 (278)
T 3g8q_A 55 VEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGRG 90 (278)
T ss_dssp CTTCEEEESSCCCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCcEEEEeCCchHHHHHHHHHhCCCEEEEEecCCC
Confidence 479999999999999999999999999999998653
No 17
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.41 E-value=3.1e-13 Score=125.96 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=53.5
Q ss_pred cCcEEEEeCCChHHHHHHHHHh-----CCCeEEEeccCCCCC--ccccchhhcccccCCCCcEEEeeccHHHHHHHHHHH
Q 014044 344 TGYDIYLVWEPCVMCAMALVHQ-----RIRRIFYAFPNPNEG--ALGSVHRLQGEKSLNHHYAVFRVLLPKEILNKNEVV 416 (432)
Q Consensus 344 ~g~tLYvT~EPC~MCa~Alv~s-----rI~rVvyg~~~~~~g--~~gs~~~l~~~~~lnh~~~V~~gvl~eEa~~l~~~~ 416 (432)
.|+|||||+|||+||++||+++ ||++|||++.++... ....+...+. ..+++|.. +..+ +++.-|
T Consensus 83 ~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~----~aGI~V~~--~~~~--e~~~~w 154 (190)
T 2nyt_A 83 YNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLK----EAGCKLRI--MKPQ--DFEYVW 154 (190)
T ss_pred CCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHH----HCCCEEEE--ecHH--HHHHHH
Confidence 4999999999999999999999 999999998765311 1112233343 34677764 3322 456666
Q ss_pred HHHHh-hCC---CCcc
Q 014044 417 AARTS-TTN---TNAT 428 (432)
Q Consensus 417 ~~R~~-~~~---~~~~ 428 (432)
..... .++ ||++
T Consensus 155 ~~fv~~~~~~~~pf~~ 170 (190)
T 2nyt_A 155 QNFVEQEEGESKAFQP 170 (190)
T ss_pred HHHHHccCCcCCccHh
Confidence 66666 666 8765
No 18
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=98.37 E-value=1.8e-06 Score=76.24 Aligned_cols=37 Identities=8% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcC-C--CCcceEEEEEcCCCCeeEEeecCc
Q 014044 151 FSFMKSAVELAQSG-D--GSIVNAAVIVDPSIKQEIASACDQ 189 (432)
Q Consensus 151 ~~~m~~A~e~a~~g-~--g~~~~~AViVDP~~~~iia~a~D~ 189 (432)
..+|+.|+++++.. . +..++||++++. +|+|+ .|++.
T Consensus 4 ~~l~~~A~~aa~~ayapYs~~~VGAal~~~-dG~i~-~G~Nv 43 (136)
T 1uwz_A 4 QELITEALKARDMAYAPYSKFQVGAALLTK-DGKVY-RGCNI 43 (136)
T ss_dssp HHHHHHHHHHHTTCBCTTTCCCEEEEEEET-TSCEE-EEECB
T ss_pred HHHHHHHHHHHHhccCccCCCCEEEEEEeC-CCeEE-EEeCc
Confidence 46889999988864 2 666788999974 57888 57764
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=97.82 E-value=0.00017 Score=64.39 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.8
Q ss_pred cccCcEEEEe-----CCChHHHHHHHHHhC
Q 014044 342 LCTGYDIYLV-----WEPCVMCAMALVHQR 366 (432)
Q Consensus 342 l~~g~tLYvT-----~EPC~MCa~Alv~sr 366 (432)
.+..+.+|++ .+||.||..+|...+
T Consensus 81 ~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~ 110 (146)
T 2fr5_A 81 DFRAIAISSDLQEEFISPCGACRQVMREFG 110 (146)
T ss_dssp CEEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred ceEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence 4577888887 899999999999987
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=97.55 E-value=0.00097 Score=58.16 Aligned_cols=36 Identities=8% Similarity=0.029 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecC
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACD 188 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D 188 (432)
..+|+.|+++++.. -+..++||++++. +|+|+. |++
T Consensus 8 ~~L~~~A~~a~~~ay~~s~f~VGAal~~~-dG~i~~-G~N 45 (130)
T 2z3g_A 8 STLIERATATINSIPISEDYSVASAALSS-DGRIFT-GVN 45 (130)
T ss_dssp HHHHHHHHHHHHHSCCCSSSCEEEEEEET-TSCEEE-EEC
T ss_pred HHHHHHHHHHHHhhCCCCCCCEEEEEEec-CCeEEE-Eec
Confidence 45789999888753 3555677888874 578884 664
No 21
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=95.65 E-value=0.056 Score=47.60 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcC--CCCcceEEEEEcCCCCeeEEeecCc
Q 014044 151 FSFMKSAVELAQSG--DGSIVNAAVIVDPSIKQEIASACDQ 189 (432)
Q Consensus 151 ~~~m~~A~e~a~~g--~g~~~~~AViVDP~~~~iia~a~D~ 189 (432)
..+|+.|+++++.. -+. .+||++++ .+|+|+ .|++.
T Consensus 5 ~~L~~~A~~a~~~ayaPyS-~VGAAl~~-~dG~i~-~G~Nv 42 (142)
T 3b8f_A 5 QQLYDVVKQLIEQRYPNDW-GGAAAIRV-EDGTIY-TSVAP 42 (142)
T ss_dssp HHHHHHHHHHHHHHCSSSC-EEEEEEEE-TTSCEE-EECCC
T ss_pred HHHHHHHHHHHHhcCCCCC-CEEEEEEe-CCCcEE-EEECc
Confidence 45778888877742 233 55566665 467777 67653
No 22
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=93.75 E-value=0.71 Score=40.48 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcC---CCCcceEEEEEcCCCCeeEEeecC
Q 014044 150 IFSFMKSAVELAQSG---DGSIVNAAVIVDPSIKQEIASACD 188 (432)
Q Consensus 150 ~~~~m~~A~e~a~~g---~g~~~~~AViVDP~~~~iia~a~D 188 (432)
...+++.|+++++.. -+...+||++++ .+|+|+. |++
T Consensus 11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~-~dG~i~~-G~N 50 (142)
T 1r5t_A 11 LEALKRAALKACELSYSPYSHFRVGCSILT-NNDVIFT-GAN 50 (142)
T ss_dssp HHHHHHHHHHHGGGCBCTTTCCCEEEEEEC-TTSCEEE-EEC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEe-CCCCEEE-EEe
Confidence 346788888887753 134456777886 4577664 654
No 23
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=91.44 E-value=1.3 Score=38.79 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=15.7
Q ss_pred CCChHHHHHHHHHhC-CCeEEE
Q 014044 352 WEPCVMCAMALVHQR-IRRIFY 372 (432)
Q Consensus 352 ~EPC~MCa~Alv~sr-I~rVvy 372 (432)
..||-||-..|...+ .. |+.
T Consensus 90 ~~PCG~CRQ~l~E~~~~~-i~v 110 (138)
T 3r2n_A 90 LMPCGRCRQLLYEHGGPE-LKI 110 (138)
T ss_dssp CCCCHHHHHHHHHHHCTT-CEE
T ss_pred CCCCHHHHHHHHHhCCCC-EEE
Confidence 689999999999876 44 443
No 24
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=90.42 E-value=2.1 Score=37.56 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.5
Q ss_pred CCChHHHHHHHHHhC
Q 014044 352 WEPCVMCAMALVHQR 366 (432)
Q Consensus 352 ~EPC~MCa~Alv~sr 366 (432)
..||-||-..|...+
T Consensus 92 ~~PCG~CRQ~l~E~~ 106 (141)
T 2d30_A 92 VPPCGACRQVMVELC 106 (141)
T ss_dssp CCCCHHHHHHHHHHS
T ss_pred cCcCHHHHHHHHHhc
Confidence 569999999999985
No 25
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=80.09 E-value=16 Score=35.62 Aligned_cols=25 Identities=4% Similarity=-0.243 Sum_probs=18.2
Q ss_pred ccCcEEEEeCC----ChHHHHHHHHHhCC
Q 014044 343 CTGYDIYLVWE----PCVMCAMALVHQRI 367 (432)
Q Consensus 343 ~~g~tLYvT~E----PC~MCa~Alv~srI 367 (432)
++...+|...+ ||-||-..|...+-
T Consensus 257 i~~i~vv~~~~~~~sPCG~CRq~L~ef~~ 285 (294)
T 1ctt_A 257 IQRAVLAEKADAPLIQWDATSATLKALGC 285 (294)
T ss_dssp EEEEEEEECTTCSSCCHHHHHHHHHHHTC
T ss_pred EEEEEEEecCCCCcCccHHHHHHHHHHCC
Confidence 44455555555 99999999998753
No 26
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=67.78 E-value=5.2 Score=37.23 Aligned_cols=21 Identities=24% Similarity=0.724 Sum_probs=18.8
Q ss_pred CcEEEEeCCChHHHHHHHHHh
Q 014044 345 GYDIYLVWEPCVMCAMALVHQ 365 (432)
Q Consensus 345 g~tLYvT~EPC~MCa~Alv~s 365 (432)
..|.|+|.-||+-||..|+..
T Consensus 101 ~vTwy~SWSPC~~CA~~v~~F 121 (203)
T 3v4k_A 101 RVTCFTSWSPCFSCAQEMAKF 121 (203)
T ss_pred EEEEEEeCCChHHHHHHHHHH
Confidence 568999999999999999874
No 27
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=62.64 E-value=51 Score=29.06 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=15.1
Q ss_pred CCChHHHHHHHHHhC-CCeEE
Q 014044 352 WEPCVMCAMALVHQR-IRRIF 371 (432)
Q Consensus 352 ~EPC~MCa~Alv~sr-I~rVv 371 (432)
..||-+|-..|...+ +.-+|
T Consensus 105 ~~PCG~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 105 LMPCGRCRQVLLEHGGPELLI 125 (150)
T ss_dssp CCCCHHHHHHHHHHHCTTCEE
T ss_pred cCCCHHHHHHHHHhCCCCEEE
Confidence 579999999998875 44333
No 28
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=57.73 E-value=8.3 Score=35.52 Aligned_cols=32 Identities=19% Similarity=0.436 Sum_probs=25.8
Q ss_pred CcEEEEeCCChHHHHHHHHHh-----CCCeEEEeccC
Q 014044 345 GYDIYLVWEPCVMCAMALVHQ-----RIRRIFYAFPN 376 (432)
Q Consensus 345 g~tLYvT~EPC~MCa~Alv~s-----rI~rVvyg~~~ 376 (432)
.-|-|+|.-||+-||..|... .+.-.||.+.-
T Consensus 87 ~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRL 123 (190)
T 3vow_A 87 QVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARL 123 (190)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEEC
T ss_pred EEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEec
Confidence 468999999999999998874 56667777654
No 29
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=55.02 E-value=34 Score=33.38 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=16.4
Q ss_pred EEEEeCCChHHHHHHHHHhC
Q 014044 347 DIYLVWEPCVMCAMALVHQR 366 (432)
Q Consensus 347 tLYvT~EPC~MCa~Alv~sr 366 (432)
.++++..||-||-..|...+
T Consensus 121 ~iav~~~PCG~CRQ~l~E~~ 140 (294)
T 1ctt_A 121 AITVNYTPCGHCRQFMNELN 140 (294)
T ss_dssp EEEESSCCCHHHHHHHTTBT
T ss_pred EEEEEcCCCHHHHHHHHHhC
Confidence 34556789999999999985
No 30
>3un7_A PBPA, penicillin-binding protein A; transpeptidase, peptidoglycan, B lactam, transferase; 2.00A {Mycobacterium tuberculosis} PDB: 3upn_A* 3upo_A* 3upp_A* 3lo7_A
Probab=45.12 E-value=22 Score=36.41 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCeeEEeec
Q 014044 169 VNAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~ 187 (432)
-+++|++||.+|+|+|-+.
T Consensus 130 ~ga~Vvmdp~TGeILAmas 148 (462)
T 3un7_A 130 KGAVVALEPSTGKILALVS 148 (462)
T ss_dssp CEEEEEECTTTCBEEEEEE
T ss_pred eEEEEEEECCCCcEEEEec
Confidence 3678999999999999876
No 31
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan synthetase; transpeptidase, transferase; 2.30A {Acinetobacter}
Probab=40.05 E-value=27 Score=36.76 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=17.2
Q ss_pred ceEEEEEcCCCCeeEEeec
Q 014044 169 VNAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~ 187 (432)
.+++|++||.+|+|+|-+.
T Consensus 232 ~ga~Vvmdp~TGeILAm~s 250 (554)
T 3ue3_A 232 SATAIAVDVKTGEILAMTS 250 (554)
T ss_dssp EEEEEEEETTTCBEEEEEE
T ss_pred eEEEEEEECCCCeEEEEEe
Confidence 4789999999999999886
No 32
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell DIV cell inner membrane, cell membrane, cell shape; HET: SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Probab=39.86 E-value=28 Score=36.51 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=17.4
Q ss_pred ceEEEEEcCCCCeeEEeecC
Q 014044 169 VNAAVIVDPSIKQEIASACD 188 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~D 188 (432)
.+++|++||.+|+|+|.+..
T Consensus 223 ~ga~Vv~d~~TGeIlAm~s~ 242 (542)
T 3equ_A 223 AGTVVVLDARTGEILALANT 242 (542)
T ss_dssp EEEEEEEETTTCBEEEEEEE
T ss_pred eEEEEEEECCCCeEEEEEeC
Confidence 46799999999999998864
No 33
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex; HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A* 3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 4fsf_A* 3oc2_A 3ocl_A* 3ocn_A*
Probab=37.58 E-value=32 Score=36.13 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=17.1
Q ss_pred ceEEEEEcCCCCeeEEeec
Q 014044 169 VNAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~ 187 (432)
.+++|++||.+|+|+|.+.
T Consensus 205 ~ga~Vvmdp~TGeILAm~s 223 (538)
T 3pbt_A 205 AGSLVIMDVKTGEILAMTN 223 (538)
T ss_dssp EEEEEEEETTTCBEEEEEE
T ss_pred eEEEEEEECCCCcEEEEEe
Confidence 4789999999999999886
No 34
>1qme_A Penicillin-binding protein 2X; peptidoglycan synthesis, resistance, cell WALL, transmembrane; 2.4A {Streptococcus pneumoniae} SCOP: d.11.1.1 d.11.1.1 d.175.1.1 e.3.1.1 PDB: 1qmf_A* 1pyy_A* 1rp5_A 1pmd_A 1k25_A 2zc3_B* 2z2l_B* 2z2m_B* 2zc4_B* 2zc3_A* 2z2l_A* 2z2m_A* 2zc4_A* 2zc3_C* 2z2l_C* 2z2m_C* 2zc4_C*
Probab=31.01 E-value=38 Score=36.45 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=16.7
Q ss_pred ceEEEEEcCCCCeeEEeec
Q 014044 169 VNAAVIVDPSIKQEIASAC 187 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~ 187 (432)
.+++|++||.+|+|+|-+.
T Consensus 240 ~ga~Vv~dp~TGeIlAm~~ 258 (702)
T 1qme_A 240 YMTATLVSAKTGEILATTQ 258 (702)
T ss_dssp EEEEEEEETTTCBEEEEEE
T ss_pred eEEEEEEECCCCcEEEEec
Confidence 3689999999999999875
No 35
>2y2m_A PBP1B, penicillin-binding protein 1B; transferase, infection, cell WALL, peptidoglycan, inhibitor; HET: E08; 1.62A {Streptococcus pneumoniae} PDB: 2y2g_A* 2y2h_A* 2y2j_A* 2y2k_A* 2y2l_A* 2y2i_A* 2y2n_A* 2y2o_A* 2y2p_A* 2y2q_A* 2uwy_A* 2xd1_A* 2bg1_A 2xd5_A* 2uwx_A* 2fff_B
Probab=24.46 E-value=95 Score=32.08 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=17.9
Q ss_pred cceEEEEEcCCCCeeEEeecC
Q 014044 168 IVNAAVIVDPSIKQEIASACD 188 (432)
Q Consensus 168 ~~~~AViVDP~~~~iia~a~D 188 (432)
.-+|+|++||.+|+|+|....
T Consensus 123 ~~~a~Vv~D~~TG~IlA~vgg 143 (494)
T 2y2m_A 123 VEVGNVLMDNQTGAILGFVGG 143 (494)
T ss_dssp CEEEEEEEETTTCBEEEEECC
T ss_pred ceEEEEEEECCCCeEEEEEEC
Confidence 457899999999999998763
No 36
>2v2f_F Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc6_B* 2zc5_B* 2c6w_B 2c5w_B*
Probab=22.88 E-value=84 Score=31.11 Aligned_cols=20 Identities=30% Similarity=0.172 Sum_probs=17.3
Q ss_pred ceEEEEEcCCCCeeEEeecC
Q 014044 169 VNAAVIVDPSIKQEIASACD 188 (432)
Q Consensus 169 ~~~AViVDP~~~~iia~a~D 188 (432)
-+++|++||.+|+|+|.+..
T Consensus 65 ~ga~Vv~d~~TG~IlAm~~~ 84 (390)
T 2v2f_F 65 QVASTVVDVSNGKVIAQLGA 84 (390)
T ss_dssp EEEEEEEETTTTEEEEEECC
T ss_pred eEEEEEEECCCCcEEEEEEC
Confidence 47899999999999998763
Done!