BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014045
         (432 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From
           Streptococcus Pneumoniae
 pdb|2BE3|B Chain B, Structure Of A Gtp Pyrophosphokinase Family Protein From
           Streptococcus Pneumoniae
          Length = 226

 Score = 34.7 bits (78), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)

Query: 270 KAVEDLR-QLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLE--GERAMTYLTPE 323
           +AV +L+ +L+GI   YR  NK  P+    +V+G ++P++++ E    R +TY T E
Sbjct: 17  QAVGELKIKLRGIRKQYRKQNKHSPI---EFVTGRVKPIESIKEKXARRGITYATLE 70


>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
 pdb|1VSY|8 Chain 8, Proteasome Activator Complex
 pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
 pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
          Length = 997

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 207 IIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDA 266
           ++H  N  A+++    L  ++QL +S   ++    + +++   K L     VVIN I+ +
Sbjct: 119 LLHSTNRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPS 178

Query: 267 LVEKAVEDLRQLK 279
           L EKA++D   +K
Sbjct: 179 L-EKAIKDHDYMK 190


>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
 pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
 pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
           Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
           Complex At 2.8- Angstrom Resolution.
 pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
           Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
           Complex At 2.8- Angstrom Resolution
          Length = 545

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 4/67 (5%)

Query: 212 NCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKA 271
           + L  E  GDYL   +Q++      + + +K+ +LEGG+    +L  +  T+ D      
Sbjct: 98  DVLRKERRGDYLGATVQVIP----HITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPF 153

Query: 272 VEDLRQL 278
           +E +RQ+
Sbjct: 154 LEAIRQM 160


>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
           Hydrolase
          Length = 457

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)

Query: 339 RYHE---LAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDT---DKICMQLFL 392
           RYHE    AA LI+     E+S L +R   +   G  S      V      ++ C Q+ +
Sbjct: 365 RYHESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYCFQIVV 424

Query: 393 DIQEYGRSLAALGVQAADIPPYRSLW 418
           DI E  + LA+      + P    +W
Sbjct: 425 DINELPKELASKFTSGKEEPIVLPIW 450


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,475,851
Number of Sequences: 62578
Number of extensions: 363482
Number of successful extensions: 841
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 838
Number of HSP's gapped (non-prelim): 10
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)