BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014045
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus
GN=Cog2 PE=2 SV=2
Length = 731
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/424 (27%), Positives = 201/424 (47%), Gaps = 37/424 (8%)
Query: 18 VNFCWIYLLQEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFR 77
VN W E++ +++ P F+PG P F + Y S+DF+ E C S+++V + R
Sbjct: 313 VNSVW----PEIVRGLEEKLPSLFNPGDPDAFHQKYTVSMDFVQRFERQCGSQASVKRLR 368
Query: 78 AEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSV 137
A Y F +WN+ VYF +RF+E+AG+L++ALT ++ G+ L
Sbjct: 369 AHPAYHNFSNKWNLPVYFQIRFREVAGSLEAALTDGL------EDAPAGSPYCLLASHRT 422
Query: 138 TLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAI 197
+ S+ CW ++FL + + RL+LQ+L+R+S ++S S ++
Sbjct: 423 WI--SLGKCWSDEMFLPLLAHRLWRLTLQILARFSVFVSELSVRPVSNESAKETKKPLTG 480
Query: 198 SAAPDD------------------FIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLD 239
S P + +Y++ D+ L E D L V Q L +
Sbjct: 481 SKDPSEDQGSHASEASAASISSTQLVYVVSDLGRL-QEWLPDLLETVKQKLEMIGFKNFS 539
Query: 240 LVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPY 299
+ ++ + +LS+ +P + + IV L E L+ + YR TNK +P S Y
Sbjct: 540 SISAALEDSQSALSAHVPALSSRIVQDLSESCFSYLKSALEVPRLYRRTNKEVPSTASSY 599
Query: 300 VSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLL 359
V L+PL L G + P L +A + T RY E +++++ +K E SL
Sbjct: 600 VDSALKPLYQLQSGHG--DKVQPAVMQSWLQEALSDSTHRYFETVSDVLNSVKKMEESLK 657
Query: 360 KIRQGAQRRAGASSDVSDH--NVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSL 417
+++Q RR+ A++ VS +SD DKI +QL LD++ G + +G+Q +DI + +L
Sbjct: 658 RLKQA--RRSPATNPVSSSGGGMSDDDKIRLQLALDVEHLGEQIQRMGLQTSDIKSFPAL 715
Query: 418 WQCV 421
+ V
Sbjct: 716 MELV 719
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium
discoideum GN=cog2 PE=3 SV=1
Length = 904
Score = 161 bits (408), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 115/437 (26%), Positives = 204/437 (46%), Gaps = 58/437 (13%)
Query: 41 FSPGRPTQFLRNYKSSLDFLAYLE-GYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRF 99
F+ G P F +NY + +F+ +E + ++ + +FR + Y K+WN VYF L F
Sbjct: 462 FATGIPDLFYKNYYLTFNFIQSIEVNFLTNKELLTQFRQSSSYSSLWKKWNFAVYFQLCF 521
Query: 100 QEIAGALD---------SALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQD 150
IA + LT + N+N+N N+ LK + L SM CW
Sbjct: 522 TNIAQHFEFNYLRIPLFDQLTLPTNNITNNNNNNNENNNEFYLKSTDGLRLSMDKCWSNS 581
Query: 151 VFLLPCSDKFLRLSLQLLSRYSNWLSSGL-----------------AARSSGHASFNPG- 192
F+ S KF +L LQL++RY ++S L + N G
Sbjct: 582 NFIFDLSSKFFKLFLQLIARYDTFISDTLIPLELELQQQLQQQQLQQQQQQQQQQQNIGD 641
Query: 193 --------------NEWAISAA---------PDDFIYIIHDINCLATEVSGDYLTHVLQL 229
N+ IS++ P++FIYII DI + +++S +Y +++
Sbjct: 642 SVIKITPKSPPSLSNQSPISSSTTLNNKQSSPENFIYIISDIYKIKSKISTNYKELIIKT 701
Query: 230 LSSCSS--EVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRM 287
+ + + E+L+L+ ILE K+L ++P + I + L+ K +E + + + +TYRM
Sbjct: 702 IGNHQNQHEILNLINDGILESCKTLEQLIPRISIIIENHLISKCLEPIEIISTLRSTYRM 761
Query: 288 TNKPLPVRHSPYVSGVLRPLKTLLEGE-RAMTYLTPEAKNELLLDAATQITSRYHELAAE 346
TNKP+P + S YVS ++ PL+ L+ + ++ ++ PE K + T +T + A
Sbjct: 762 TNKPVPTKPSIYVSNLISPLEILINNKASSLHFIPPEIKLNWAISVLTPVTESFKNAATN 821
Query: 347 LISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGV 406
LI ++ + K+ +++ ++ S ++SD DKI +QL+LD+ ++G + G+
Sbjct: 822 LIQSVTQSNDIINKMV----KKSKPTTTTSGGDMSDMDKISLQLYLDVDKFGLYIQKFGI 877
Query: 407 QAADIPPYRSLWQCVAP 423
P+ L V P
Sbjct: 878 NLLTFEPFLGLKSIVEP 894
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens
GN=COG2 PE=1 SV=1
Length = 738
Score = 158 bits (400), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/439 (27%), Positives = 209/439 (47%), Gaps = 46/439 (10%)
Query: 18 VNFCWIYLLQEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFR 77
VN W ++Q +++ P F+PG P F Y S+DF+ LE C S+++V + R
Sbjct: 313 VNSVWPQIVQ----GLEEKLPSLFNPGNPDAFHEKYTISMDFVRRLERQCGSQASVKRLR 368
Query: 78 AEAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAA-SLAPVQNSNSNQGNSQALTLKQS 136
A Y F K+WN+ VYF +RF+EIAG+L++ALT AP ++ L S
Sbjct: 369 AHPAYHSFNKKWNLPVYFQIRFREIAGSLEAALTDVLEDAPAES---------PYCLLAS 419
Query: 137 VTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAAR-------------- 182
S++ CW ++FL + RL+LQ+L+RYS +++ L+ R
Sbjct: 420 HRTWSSLRRCWSDEMFLPLLVHRLWRLTLQILARYSVFVNE-LSLRPISNESPKEIKKPL 478
Query: 183 --SSGHASFNPGNEWAISAAPDD-----------FIYIIHDINCLATEVSGDYLTHVLQL 229
S S GN + P + +Y++ D++ L ++ + L +
Sbjct: 479 VTGSKEPSITQGNTEDQGSGPSETKPVVSISRTQLVYVVADLDKLQEQLP-ELLEIIKPK 537
Query: 230 LSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTN 289
L + + ++ + S S+ +P + + I+ L + L+ + YR TN
Sbjct: 538 LEMIGFKNFSSISAALEDSQSSFSACVPSLSSKIIQDLSDSCFGFLKSALEVPRLYRRTN 597
Query: 290 KPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELIS 349
K +P S YV L+PL L G + L + L ++ T +Y+E +++++
Sbjct: 598 KEVPTTASSYVDSALKPLFQLQSGHK--DKLKQAIIQQWLEGTLSESTHKYYETVSDVLN 655
Query: 350 VARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAA 409
+K E SL +++Q A++ A+ +SD DKI +QL LD++ G + LG+QA+
Sbjct: 656 SVKKMEESLKRLKQ-ARKTTPANPVGPSGGMSDDDKIRLQLALDVEYLGEQIQKLGLQAS 714
Query: 410 DIPPYRSLWQCVAPSDRQS 428
DI + +L + VA + Q+
Sbjct: 715 DIKSFSALAELVAAAKDQA 733
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila
melanogaster GN=ldlCp PE=2 SV=1
Length = 710
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 113/397 (28%), Positives = 184/397 (46%), Gaps = 34/397 (8%)
Query: 41 FSPGRPTQFLRNYKSSLDFLAYLEGY--CPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLR 98
F+PG F YK + DFL +E C AV +R F +WN+ VYF +
Sbjct: 327 FAPGNSEVFYVKYKCTRDFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQIC 386
Query: 99 FQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSV--TLLDSMKSCWRQDVFLLPC 156
FQEIAG + A L PV +S + N K S ++M CW + V+L
Sbjct: 387 FQEIAGKFE-----AQLEPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPEV 441
Query: 157 SDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIH-DINCLA 215
KF +L++Q++ R S W++ + + G+ ++ + + +H DI L
Sbjct: 442 FPKFYKLNVQVVLRLSRWITDAITQ--------SKGSNFSKPYTRNQLLIALHADIRKLD 493
Query: 216 TEVSGDYLTHVLQLL------SSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALV- 268
+L + QL+ C+ D++ +S+ +L + L + T+V+ L+
Sbjct: 494 A-----HLPELQQLIIKSVPVEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLIG 548
Query: 269 EKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLE-GERAMTYLTPEAKNE 327
E E++RQ+ + YR TN+ +P R S YV +LRPLK + E + L E +
Sbjct: 549 ECETENVRQVNDLPRLYRKTNREVPTRCSSYVEQMLRPLKAFAQQNESQLGTLVVE---Q 605
Query: 328 LLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKIC 387
+L + A+ IT Y + +++++ +KTE SL ++R A S S +SD DKI
Sbjct: 606 ILAEVASHITKAYFNVVSDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKIR 665
Query: 388 MQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPS 424
+QL +D+ + + L L QA I L V S
Sbjct: 666 VQLRVDVTSWRQELCKLNFQATQIDKLVELTNMVEDS 702
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis
elegans GN=cogc-2 PE=2 SV=1
Length = 681
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/325 (20%), Positives = 131/325 (40%), Gaps = 26/325 (8%)
Query: 88 QWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCW 147
++N+ VYF L D ++ A + S N+ N+ L S ++ +++ W
Sbjct: 351 KFNLLVYFKLETHRFGKQCDQLMSPEMFAEPETS-ENRENTPQLHCGVSRAIITAIEHVW 409
Query: 148 RQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYI 207
DV+L P DK +L+LL ++ +W +++ + +W + +
Sbjct: 410 SDDVYLPPIVDKLWDFTLKLLLKHFSW------SQTMKNYFMEEKRDWT------SMVTL 457
Query: 208 IHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDAL 267
D L V L + + + Q + + G+S+ S+ + ++I++
Sbjct: 458 RSDTGNLHQLVFDFALESIWGKFHDITVDTAPF-GQCLTKHGRSIDSLCVQIDDSIIEMF 516
Query: 268 VEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTY-LTPEAKN 326
E +++ Q+ + YR T K P HS YV + ++ L E + T E
Sbjct: 517 SEVLHQEIAQVSDVPKQYRWTKKSPPTTHSKYVVTAIEMVENLKEKLCCEEHPHTDEIVR 576
Query: 327 ELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKI 386
++ L A + E++ T SSL + ++ +G++ V+D DKI
Sbjct: 577 KVNLSAFNYFVGK----GNEVLDSVEATGSSLSRFKRKTTTDSGST-------VTDDDKI 625
Query: 387 CMQLFLDIQEYGRSLAALGVQAADI 411
Q++ D + + L AD+
Sbjct: 626 KQQIYHDAKYFLSYAENLVFSQADL 650
>sp|Q5AAJ8|RT109_CANAL Histone acetyltransferase RTT109 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=RTT109 PE=3 SV=1
Length = 359
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 119 QNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSG 178
+N N N Q+L L+ ++++DS+ W ++P +DK+ + + + +YS+W S G
Sbjct: 190 KNPYKNLLNGQSL-LRWWISIIDSITKGWNNHKLMIPGADKY--ATRKFIEKYSDW-SEG 245
Query: 179 LAARSSGHASFNPGNEWAISAAPDD 203
+ G A AI PDD
Sbjct: 246 HIFKKDGLAV------QAIPLFPDD 264
>sp|Q11HU6|PYRG_MESSB CTP synthase OS=Mesorhizobium sp. (strain BNC1) GN=pyrG PE=3 SV=2
Length = 542
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 212 NCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKA 271
N + E GDYL +Q++ V D +KQ +LEG + +L + T+ D
Sbjct: 97 NIIEKERRGDYLGATVQVIP----HVTDEIKQFVLEGNEEFDFVLCEIGGTVGDIEAMPF 152
Query: 272 VEDLRQL 278
+E +RQL
Sbjct: 153 LEAIRQL 159
>sp|A3MYK8|PYRG_ACTP2 CTP synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=pyrG PE=3 SV=1
Length = 545
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 214 LATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVE 273
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +E
Sbjct: 100 LRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFLE 155
Query: 274 DLRQL 278
LRQL
Sbjct: 156 ALRQL 160
>sp|B0BS41|PYRG_ACTPJ CTP synthase OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=pyrG PE=3 SV=1
Length = 545
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 214 LATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVE 273
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +E
Sbjct: 100 LRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFLE 155
Query: 274 DLRQL 278
LRQL
Sbjct: 156 ALRQL 160
>sp|B3GZX8|PYRG_ACTP7 CTP synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=pyrG PE=3 SV=1
Length = 545
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 214 LATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVE 273
L E GDYL +Q++ ++E+ K+ ++EGGK ++ V T+ D +E
Sbjct: 100 LRKERRGDYLGATIQVIPHITNEI----KERVIEGGKGRDVVIVEVGGTVGDIESLPFLE 155
Query: 274 DLRQL 278
LRQL
Sbjct: 156 ALRQL 160
>sp|A4IJP9|ROCA_GEOTN 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1
Length = 515
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 305 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 353
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q5L3K8|ROCA_GEOKA 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus kaustophilus
(strain HTA426) GN=rocA PE=3 SV=1
Length = 515
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 305 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 353
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q21LC4|PYRG_SACD2 CTP synthase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961
/ DSM 17024) GN=pyrG PE=3 SV=1
Length = 543
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 213 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 272
L E GDYL +Q++ + E+ K+ IL GG + L + T+ D + +
Sbjct: 98 VLRKERRGDYLGGTVQVIPHITDEI----KRRILAGGDGVDIALVEIGGTVGDIESQPFL 153
Query: 273 EDLRQLK 279
E +RQLK
Sbjct: 154 EAVRQLK 160
>sp|A0L4Y7|RIMM_MAGSM Ribosome maturation factor RimM OS=Magnetococcus sp. (strain MC-1)
GN=rimM PE=3 SV=1
Length = 177
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 211 INCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEK 270
I C EV G L V++++++ +++VL I+ GG +LP + +V+ +++
Sbjct: 113 IGCQVVEVDGTELGRVVEMMATGANDVL------IVRGGPEGEKLLPYIEEVVVELDLDR 166
Query: 271 AVEDLRQLKGI 281
+ ++ ++G+
Sbjct: 167 QIIKVKLMEGM 177
>sp|Q8INT5|DAAF1_DROME Dynein assembly factor 1, axonemal homolog OS=Drosophila
melanogaster GN=dtr PE=2 SV=2
Length = 1483
Score = 32.7 bits (73), Expect = 5.5, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 314 ERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASS 373
E M L P+ K + LL+ + I + + A +L + R+ E L ++RQ Q G S
Sbjct: 533 EDIMINLLPKTKEKTLLEKDSIIENE--KCAHDLDEMGRQMEEDLAELRQSTQNLIGISI 590
Query: 374 DVSDHNVSDTDK 385
D + S+TD+
Sbjct: 591 DETARTDSETDE 602
>sp|Q5WEQ4|SYV_BACSK Valine--tRNA ligase OS=Bacillus clausii (strain KSM-K16) GN=valS
PE=3 SV=1
Length = 880
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 212 NCLATEVSGDYLTHVL----QLLSSCSSEVLDLVKQSILEGGKSLS-SMLPVVINTIVDA 266
N A + + L HVL ++L + + + Q + G+S++ + PV ++V
Sbjct: 662 NEQAKQATRSVLAHVLDQTMRMLHPFMPFITEEIWQHLPHEGESITVANWPVYDQSLV-- 719
Query: 267 LVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEG--ERAMTYLTPEA 324
E+AVED+ LK + R T L V S + +RP + +R + Y+ A
Sbjct: 720 -FEEAVEDMEALKSLIHAIRTTRSELNVPMSKQIELKIRPQDEQMAARLQRGVAYIEKFA 778
Query: 325 KNELLLDAATQITS 338
N LLD A + +
Sbjct: 779 -NPSLLDIAVDLAT 791
>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo
sapiens GN=TRRAP PE=1 SV=3
Length = 3859
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 206 YIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVD 265
YII L T+ S + +LQLLS+C +E L K+ ++ L++ L +D
Sbjct: 293 YIIRIYQELVTKYSQQMVKGMLQLLSNCPAETAHLRKELLIAAKHILTTELRNQFIPCMD 352
Query: 266 ALVEKAVEDLRQLKGITATYRMTNKPL 292
L ++++ L G T R T +PL
Sbjct: 353 KLFDESI-----LIGSGYTARETLRPL 374
>sp|Q5PAY0|PNP_ANAMM Polyribonucleotide nucleotidyltransferase OS=Anaplasma marginale
(strain St. Maries) GN=pnp PE=3 SV=1
Length = 805
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 193 NEWAISAAPDDFI-YIIHDINCLATEVSGDY-------------LTHVLQLLSSCSSEVL 238
E+A +A P D + ++ HDI + +++S Y T VLQL ++
Sbjct: 221 EEFAEAAGPKDVVEFVPHDIGKVVSDISSGYSEKFSVAYSDHNKKTRVLQLDAAREGLYS 280
Query: 239 DLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVED-LRQLKG 280
DL ++ + E G+ + + I T +LV V D L+++ G
Sbjct: 281 DLCRKHVEESGEYTEQEVLLAIKTFERSLVRARVLDTLKRVDG 323
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,168,260
Number of Sequences: 539616
Number of extensions: 5332119
Number of successful extensions: 15002
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 14979
Number of HSP's gapped (non-prelim): 26
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)