Query 014045
Match_columns 432
No_of_seqs 115 out of 158
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 01:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014045.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014045hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2307 Low density lipoprotei 100.0 2E-106 4E-111 817.8 33.4 411 7-430 290-702 (705)
2 PF12022 DUF3510: Domain of un 100.0 1.6E-42 3.5E-47 301.9 12.6 125 264-394 1-125 (125)
3 PF10474 DUF2451: Protein of u 97.8 0.0014 3E-08 63.4 17.1 126 245-404 40-169 (234)
4 PF04091 Sec15: Exocyst comple 96.5 0.09 2E-06 53.0 15.3 180 200-422 91-275 (311)
5 PF10191 COG7: Golgi complex c 95.8 1.3 2.8E-05 50.2 21.7 70 323-426 675-744 (766)
6 KOG2033 Low density lipoprotei 91.9 0.86 1.9E-05 49.8 9.3 79 291-401 638-716 (863)
7 PF14923 CCDC142: Coiled-coil 88.9 8.2 0.00018 40.9 13.3 82 259-343 232-319 (450)
8 PF07393 Sec10: Exocyst comple 85.6 35 0.00076 38.3 17.0 236 138-420 421-664 (710)
9 PF06046 Sec6: Exocyst complex 77.5 39 0.00084 36.6 13.3 162 201-405 315-476 (566)
10 PF04437 RINT1_TIP1: RINT-1 / 74.7 1.3E+02 0.0027 32.3 18.1 302 21-342 70-397 (494)
11 KOG2180 Late Golgi protein sor 42.5 5.5E+02 0.012 29.1 17.9 53 259-315 546-598 (793)
12 KOG3048 Molecular chaperone Pr 42.5 1.4E+02 0.003 26.9 7.5 78 269-360 47-126 (153)
13 PLN03242 diacylglycerol o-acyl 39.6 32 0.00069 36.1 3.7 49 49-98 271-319 (410)
14 KOG1011 Neurotransmitter relea 39.4 1.1E+02 0.0023 34.1 7.6 73 241-314 877-949 (1283)
15 PLN02401 diacylglycerol o-acyl 37.9 36 0.00077 36.1 3.8 49 49-98 296-344 (446)
16 PF01765 RRF: Ribosome recycli 36.0 3.3E+02 0.0072 24.6 9.5 68 319-403 86-155 (165)
17 PF15151 RGCC: Response gene t 34.8 68 0.0015 27.5 4.3 34 333-366 21-58 (121)
18 PF08385 DHC_N1: Dynein heavy 32.4 6.5E+02 0.014 26.9 27.2 82 23-110 152-237 (579)
19 PF06840 DUF1241: Protein of u 31.8 3.6E+02 0.0078 24.5 8.7 101 242-363 32-141 (154)
20 PHA00442 host recBCD nuclease 30.2 86 0.0019 23.4 3.6 45 380-426 10-58 (59)
21 PRK14011 prefoldin subunit alp 29.9 1.1E+02 0.0024 27.4 5.1 77 269-362 37-115 (144)
22 KOG3725 SH3 domain protein SH3 29.2 92 0.002 30.6 4.7 41 384-424 199-244 (375)
23 KOG3523 Putative guanine nucle 26.7 1.7E+02 0.0036 32.4 6.5 47 133-179 309-355 (695)
24 PF10540 Membr_traf_MHD: Munc1 26.7 4E+02 0.0087 23.4 8.1 58 288-347 75-133 (137)
25 PF08287 DASH_Spc19: Spc19; I 26.4 2.6E+02 0.0057 25.2 7.0 17 269-285 17-34 (153)
26 PF08397 IMD: IRSp53/MIM homol 26.1 5.6E+02 0.012 24.1 9.8 54 298-366 80-133 (219)
27 KOG1410 Nuclear transport rece 20.5 1.2E+03 0.027 26.6 11.6 94 222-336 886-984 (1082)
No 1
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-106 Score=817.76 Aligned_cols=411 Identities=36% Similarity=0.564 Sum_probs=369.1
Q ss_pred hhhccCCCCcccchhhhhhHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHhhchhHHH
Q 014045 7 MNKSSNVLKKTVNFCWIYLLQEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG--YCPSRSAVAKFRAEAIYVE 84 (432)
Q Consensus 7 ~~~~~~~~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~Fh~nY~~t~~Fl~~lE~--~c~S~~~v~~lR~~~~y~~ 84 (432)
|-.++.+|+||||||+||+|++|..+|++.||++|+||||++||+||++|++||++||+ .|+++.+|++||+||.|++
T Consensus 290 ~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~~s 369 (705)
T KOG2307|consen 290 MTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAICVS 369 (705)
T ss_pred hchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHHHH
Confidence 34677788999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred HHHhhccchhhHHHHHHHHHhHHHhhcccccccccCCCCCCCCCcccchhhHHHHHHHHhhhccCCccccccchHHHHHH
Q 014045 85 FMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLS 164 (432)
Q Consensus 85 F~~rWnLpVYFQLRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~Vfl~~L~~rFwkLt 164 (432)
|++|||||||||||||||||++|++|+ ++.......+.+.+++.++++.+|.++|+||.+||+||||||++.|||||||
T Consensus 370 F~kkwNl~VYFqlrfqeiag~ldaaLt-p~~~~d~l~d~~~Est~~l~l~as~a~~ealrrcWsddvylp~~vdKl~rlt 448 (705)
T KOG2307|consen 370 FMKKWNLPVYFQLRFQEIAGQLDAALT-PEMFADPLTDENRESTPQLHLGASRAIIEALRRCWSDDVYLPPIVDKLWRLT 448 (705)
T ss_pred HHHhcCcceeEeeeHHHHHHHHHHhcC-chhhcccccccccccCccchhhHhHHHHHHHHHHccccccchhhHHHHHHHH
Confidence 999999999999999999999999998 5444443334445666689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHHhHHHHHHHHHhhccCChhhHHHHHHH
Q 014045 165 LQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQS 244 (432)
Q Consensus 165 LQllsRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~ 244 (432)
||+++||+.|+++ +.+.. +++.+ .| .+.++++++++|...+.+.+.+.++++|+++++..+....+.+.++
T Consensus 449 lQlllRysrwisa-itns~----gs~~s-kp---~trtqlvyv~hdd~~llqevl~elle~I~~kl~~~~k~~sdv~a~s 519 (705)
T KOG2307|consen 449 LQLLLRYSRWISA-ITNSF----GSEKS-KP---ATRTQLVYVRHDDGNLLQEVLPELLESIWGKLHDITKVFSDVFAQS 519 (705)
T ss_pred HHHHHHHhHHHHH-HHhcc----CCCCC-CC---cchhheeeeecccchHHHHHhHHHHHHHHhhccchhhhhHHHHHHH
Confidence 9999999999984 33311 22221 23 4567899999666655565555599999999999887777788889
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHH
Q 014045 245 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEA 324 (432)
Q Consensus 245 l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~ 324 (432)
|+.++.+|.+++|.|.+.||+.+++.|...|+||++|||+|||||||+||+||+||.++|+|+++|.++.+. .|.+.+
T Consensus 520 le~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv~aLrpvkal~eg~k~--~L~q~~ 597 (705)
T KOG2307|consen 520 LEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKC--ELEQPH 597 (705)
T ss_pred HHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHHHHHHHHHHHHHhhhh--hhcCch
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876 688899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 014045 325 KNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 404 (432)
Q Consensus 325 ~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~l 404 (432)
.+||+.+|..++|.+|++.++|||+||+|||+||+|||+.+++++|+ ++.++++||||||||+||++||++|+.++++|
T Consensus 598 ~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~-s~gss~~vSddDKir~QL~lDv~~~~s~~~kL 676 (705)
T KOG2307|consen 598 TEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS-SGGSSQTVSDDDKIRQQLYLDVKYFLSYAEKL 676 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCCCCCcCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999865444 55566799999999999999999999999999
Q ss_pred CCCCCCCccHHHHHHhcccccccccc
Q 014045 405 GVQAADIPPYRSLWQCVAPSDRQSLI 430 (432)
Q Consensus 405 gv~~~~~~~~~~L~~~V~~~~~~~~~ 430 (432)
|+++.+|.+|++|.+++....++-.+
T Consensus 677 ~fqa~di~~~~~lvel~~~~~dsa~~ 702 (705)
T KOG2307|consen 677 VFQAADITGLQELVELFDKDADSAIV 702 (705)
T ss_pred cchHhhhhhHHHHHHHHHhhhhhhhh
Confidence 99999999999999999887765443
No 2
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=100.00 E-value=1.6e-42 Score=301.92 Aligned_cols=125 Identities=47% Similarity=0.794 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 014045 264 VDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHEL 343 (432)
Q Consensus 264 v~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~ 343 (432)
|++|+++|+++|++|++||++|||||||+||+||+||++||+||+.|+++... .++++..++|+.+|+++|+++|++.
T Consensus 1 v~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~--~~~~~~~~~~~~~v~~~v~~~y~~~ 78 (125)
T PF12022_consen 1 VQSLTERCVEPLKQVRSIPRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEYSS--YLSPEIIEEWLQKVITEVTERYYEI 78 (125)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhhccCCCCCCCccHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999998855 7999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHH
Q 014045 344 AAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDI 394 (432)
Q Consensus 344 v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv 394 (432)
++|||++|+||||||+||||++++.+|++ .+|+||+||||+||+|||
T Consensus 79 ~~evL~sv~KtEeSL~rlkk~~~~~~~~~----~~~~sD~dKIr~QL~LDV 125 (125)
T PF12022_consen 79 ASEVLTSVRKTEESLKRLKKRRKRTSGSS----SGGMSDDDKIRLQLYLDV 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc----CCCCCcHHHHHHHHHccC
Confidence 99999999999999999999987532321 268999999999999997
No 3
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=97.80 E-value=0.0014 Score=63.42 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=88.5
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc----ccccCC
Q 014045 245 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE----RAMTYL 320 (432)
Q Consensus 245 l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~----~~~~~l 320 (432)
+.+-....-+..|.+...+...++.+....-.-+..|+.. +|.-|+++++||+||+.+++-+..|...- +.. .+
T Consensus 40 l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~v-KWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~-~i 117 (234)
T PF10474_consen 40 LEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANV-KWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQG-PI 117 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333434445667777788887777776544445566665 89999999999999999999999997644 323 67
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 014045 321 TPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRS 400 (432)
Q Consensus 321 ~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~ 400 (432)
+++....+...++.-+++... |-..|.||-. ++. |.+|.||++.|...
T Consensus 118 ~~~~~~~lw~~~i~~~~~~Lv--------------eg~s~vkKCs----------------~eG--RalM~lD~q~~~~~ 165 (234)
T PF10474_consen 118 PPEVQNVLWDRLIFFAFETLV--------------EGYSRVKKCS----------------NEG--RALMQLDFQQLQNK 165 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------------HHHHhccCCC----------------hhh--HHHHHHHHHHHHHH
Confidence 888777777766665554432 3355555432 222 77888899999999
Q ss_pred HHhc
Q 014045 401 LAAL 404 (432)
Q Consensus 401 ~~~l 404 (432)
++++
T Consensus 166 le~l 169 (234)
T PF10474_consen 166 LEKL 169 (234)
T ss_pred HHHH
Confidence 9988
No 4
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.50 E-value=0.09 Score=52.99 Aligned_cols=180 Identities=18% Similarity=0.183 Sum_probs=94.4
Q ss_pred ChhhHHHHHHhHHHHHHHHhHHHHHHHHHhhcc-CChhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 014045 200 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSS-CSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQL 278 (432)
Q Consensus 200 ~~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~-~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v 278 (432)
...+++-+..+++-|+..... +.+.|...... .+.+. ..-..+.+.+......-.+.|...+-.+.-+.|
T Consensus 91 ~l~qi~Qi~iNl~~le~Ac~~-le~~l~~~~~~~~~~~~-----~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l--- 161 (311)
T PF04091_consen 91 NLSQIVQIVINLEYLEKACKE-LEEFLSSLRGIPQSAGG-----HIRLKATKMFKDARKAAEKRIFELVNSKIDEFL--- 161 (311)
T ss_dssp -HHHHHHHHHHHHHHHTTHHH-HHHHHHHHHT---------------------S---TTHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHhHHHHHHHHHH-HHHHHHHHcCCCccchH-----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 356777777777777665554 44444443311 11110 011222333333333344455555555444444
Q ss_pred ccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 014045 279 KGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL 358 (432)
Q Consensus 279 ~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL 358 (432)
+ ..-|-||-.++|+.||.|+..++.=|+.-.+..-. .||.++++.+...+++++++++.+. |.+ +..
T Consensus 162 -e-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~--~LP~~v~~~~~~~a~~his~~l~~~----Ll~-----~~v 228 (311)
T PF04091_consen 162 -E-LAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLT--NLPPSVKQLVYFSACDHISESLLDL----LLS-----DDV 228 (311)
T ss_dssp -T-T--TT--------S--HHHHHHHHHHHHHHHTTTT--TSH-HHHHHHHHHHHHHHHHHHHHH----HT---------
T ss_pred -h-hcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH----hcC-----Ccc
Confidence 2 24588999999999999999999999988865433 6899999999999999999999984 421 223
Q ss_pred HHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC---CC-CCCCccHHHHHHhcc
Q 014045 359 LKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALG---VQ-AADIPPYRSLWQCVA 422 (432)
Q Consensus 359 ~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lg---v~-~~~~~~~~~L~~~V~ 422 (432)
+|+ .. +| =.|+-+||.++..-++.+. .+ ..-...|.+|.++|.
T Consensus 229 k~i---n~---~a---------------l~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvd 275 (311)
T PF04091_consen 229 KRI---NM---NA---------------LQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVD 275 (311)
T ss_dssp -----------TT---------------HHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHH
T ss_pred ccc---CH---HH---------------HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHH
Confidence 332 21 11 2589999999999999882 22 223467788887764
No 5
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=95.83 E-value=1.3 Score=50.18 Aligned_cols=70 Identities=23% Similarity=0.271 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 014045 323 EAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLA 402 (432)
Q Consensus 323 e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~ 402 (432)
+....|+..|...+++.|.+.+-++- . . .+.=+.||.-|++||.+=++
T Consensus 675 ~~~~~wl~~va~~~~~~~~~~i~~i~-----------~-------------------l--~~~~~~QL~~Di~Yl~nVl~ 722 (766)
T PF10191_consen 675 DFADEWLGKVARATCALYLEQILEIP-----------E-------------------L--SESGAKQLATDIDYLSNVLS 722 (766)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccc-----------c-------------------C--CHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998532211 1 1 12337899999999999999
Q ss_pred hcCCCCCCCccHHHHHHhcccccc
Q 014045 403 ALGVQAADIPPYRSLWQCVAPSDR 426 (432)
Q Consensus 403 ~lgv~~~~~~~~~~L~~~V~~~~~ 426 (432)
+||+++. +.++.+..|+..+.+
T Consensus 723 aLg~~~~--~~L~~~~~ll~~~~~ 744 (766)
T PF10191_consen 723 ALGLSPP--PNLQQLVTLLKAPPD 744 (766)
T ss_pred HhCCCCC--HHHHHHHHHHcCCHH
Confidence 9998776 556666666665543
No 6
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=91.85 E-value=0.86 Score=49.84 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=63.2
Q ss_pred CCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCC
Q 014045 291 PLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAG 370 (432)
Q Consensus 291 ~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g 370 (432)
..|..||.||.+.+.-|.+-++....+ .|++.+.++++...+..++-.|-. +...+.|+.
T Consensus 638 rLPsqPslyiqSfL~rl~qeInrvggh-~Lp~~vLQ~f~~sl~~k~~~~YE~-----l~~a~~~ka-------------- 697 (863)
T KOG2033|consen 638 RLPSQPSLYIQSFLQRLHQEINRVGGH-TLPPKVLQAFIQSLIGKLLCHYEG-----LAHAECTKA-------------- 697 (863)
T ss_pred ecCCCccHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHH--------------
Confidence 489999999999999999988876554 799999999999999999999988 445554432
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 014045 371 ASSDVSDHNVSDTDKICMQLFLDIQEYGRSL 401 (432)
Q Consensus 371 ~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~ 401 (432)
.+||-+||++|..+...-+
T Consensus 698 ------------sqn~aLQll~DLrfl~~Vl 716 (863)
T KOG2033|consen 698 ------------SQNIALQLLFDLRFLERVL 716 (863)
T ss_pred ------------HHhhHHHHHHHHHHHHHHH
Confidence 1567788888887765543
No 7
>PF14923 CCDC142: Coiled-coil protein 142
Probab=88.87 E-value=8.2 Score=40.87 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHH----HhhhhccchhhhhccCCC-CCCCCCcchHhhhHhH-HHHHhccccccCCCHHHHHHHHHHH
Q 014045 259 VINTIVDALVEKAVE----DLRQLKGITATYRMTNKP-LPVRHSPYVSGVLRPL-KTLLEGERAMTYLTPEAKNELLLDA 332 (432)
Q Consensus 259 l~~~iv~~l~~~c~~----~Lk~v~~Ip~~YR~Tnk~-~Pt~~S~YV~~il~PL-~~F~~~~~~~~~l~~e~~~~~~~~v 332 (432)
+.+.+++.+...|.. .++.+==-.+-.|+-..+ .|+.||.||..++.-+ .-.+++.. .++++.....+..+
T Consensus 232 ~s~e~~~~f~~~C~~~s~~~f~~~mP~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q---~L~~~aq~~~l~~~ 308 (450)
T PF14923_consen 232 LSSECLRLFSQDCRKMSLAIFELCMPSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQ---GLPPEAQIPALSQA 308 (450)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 444555666666654 444444446667766555 6999999996554433 11233332 36777666666666
Q ss_pred HHHHHHHHHHH
Q 014045 333 ATQITSRYHEL 343 (432)
Q Consensus 333 ~~~vt~~Y~~~ 343 (432)
++.+++.....
T Consensus 309 l~a~~eAWLdh 319 (450)
T PF14923_consen 309 LTAMLEAWLDH 319 (450)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
No 8
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=85.56 E-value=35 Score=38.31 Aligned_cols=236 Identities=19% Similarity=0.172 Sum_probs=124.0
Q ss_pred HHHHHHhhhc--cCCccccccchHHHHHHHHHH-HHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHHH
Q 014045 138 TLLDSMKSCW--RQDVFLLPCSDKFLRLSLQLL-SRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCL 214 (432)
Q Consensus 138 ~l~~~l~~cW--s~~Vfl~~L~~rFwkLtLQll-sRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L 214 (432)
..-+++.||= ++.--++.-+...+.+.++-+ .+|. +.++.+...+.+..+.. ......... +..++.-++.+
T Consensus 421 ~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i---~~~lea~~~~~~~~~~~-~~~~~~~l~-fl~~i~~~~~i 495 (710)
T PF07393_consen 421 WNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHI---EPALEAAYYKLSSQDIA-ESKEVPPLV-FLELINQADTI 495 (710)
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhccccc-ccCCCCCcc-HHHHHHHHHHH
Confidence 3345566663 344445555555566666544 5554 34443111000011100 000111233 66677777888
Q ss_pred HHHHhHHHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCC---
Q 014045 215 ATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKP--- 291 (432)
Q Consensus 215 ~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~--- 291 (432)
...+...|.+.|.+.+. ..++....+.+........++..+....+..++.+...+...|. ..=+.=|+..+-.
T Consensus 496 ~~l~~~~~~~~l~pl~~-~~~~~~~~~~~~k~~~~~~le~~v~~gL~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~~~~~ 572 (710)
T PF07393_consen 496 LQLLQIFYKEELLPLIQ-SSPDFLNECIQKKKSFESRLEEKVNAGLNKGIDVLMNWVEFILS--EQKKTDFKPKEDDLSL 572 (710)
T ss_pred HHHHHHHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCCCcccccc
Confidence 88888877777777663 22333323333334444445555555555566666665544444 5556667763322
Q ss_pred --CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccC
Q 014045 292 --LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRA 369 (432)
Q Consensus 292 --~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~ 369 (432)
.||.+|.-|-..|..+..-..+ .+... -+..++.++..+++... .+-++|++=.. .
T Consensus 573 ~~~~T~ac~~vv~~L~~~~~~~~~-----~l~~~----nl~~f~~elg~~l~~~l----------~~h~kk~~vs~---~ 630 (710)
T PF07393_consen 573 DQQPTPACQEVVEFLERHCSLLKG-----SLDGS----NLDVFLQELGERLHRLL----------LKHLKKFTVSS---T 630 (710)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHH-----Hccch----hHHHHHHHHHHHHHHHH----------HHHHHhCccCc---h
Confidence 3666655555555444333322 34433 34455677778888742 12344432111 1
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHh
Q 014045 370 GASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQC 420 (432)
Q Consensus 370 g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv~~~~~~~~~~L~~~ 420 (432)
|| +||.-|+.+|.+-+..+|++. =.+.|..|.++
T Consensus 631 Gg----------------~~l~~Dl~~Y~~~~~~~~~~~-v~~~F~~L~~l 664 (710)
T PF07393_consen 631 GG----------------LQLIKDLNEYQDFIRSWGIPS-VDEKFEALKEL 664 (710)
T ss_pred hH----------------HHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHH
Confidence 22 789999999999999998753 35677777764
No 9
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=77.52 E-value=39 Score=36.62 Aligned_cols=162 Identities=13% Similarity=0.167 Sum_probs=87.4
Q ss_pred hhhHHHHHHhHHHHHHHHhHHHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Q 014045 201 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 280 (432)
Q Consensus 201 ~~~lv~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~ 280 (432)
.+.+++++.|+..+...+.. +...+... .+.+.-..+...+.+..+.+..+.....+.+++.+...+..+++.+-
T Consensus 315 ~eyliA~~N~~~~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lf- 389 (566)
T PF06046_consen 315 LEYLIAVANNCLRCRDYVES-LEQKFEEK---VSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLF- 389 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---S-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTT-
T ss_pred HHHHHHHhccHHHHHHHHHH-HHHhcccc---cchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC-
Confidence 46689999999988775444 22222222 22111122223333333333333333333333333333333332221
Q ss_pred chhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014045 281 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 360 (432)
Q Consensus 281 Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~R 360 (432)
|++=.-. ..|..|+.-+..|....+. ++.+...+.++..+...+...|.... +. +|
T Consensus 390 -------t~~W~~~---~~~~~I~~Ti~dY~~d~~~--~l~~~~~~~l~~~~~~~~v~~Yl~~l---~~---------kk 445 (566)
T PF06046_consen 390 -------TKKWYSG---EAVDTICATIEDYLQDFQH--YLRPPYFQELIEELHDRVVKEYLRAL---MK---------KK 445 (566)
T ss_dssp -------SGGGCTS----HHHHHHHHHHHHHHHHCC--CS-HHHHHHHHHHHHHHHHHHHHHGG---GG-----------
T ss_pred -------cCcCcCc---chHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHHH---HH---------hh
Confidence 2211111 7889999999999987765 68999999999999999999998742 11 22
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Q 014045 361 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALG 405 (432)
Q Consensus 361 LKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lg 405 (432)
++=+ +..+.++.--||..|++.+.....+++
T Consensus 446 ~~~~--------------~~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 446 IKFK--------------NKEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp ---------------------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhcc--------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2100 011222334566688888888888887
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=74.70 E-value=1.3e+02 Score=32.30 Aligned_cols=302 Identities=16% Similarity=0.176 Sum_probs=139.7
Q ss_pred hhhhhHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhh---CC-CH-HHHHHHhhchhHHHHHHhhccchhh
Q 014045 21 CWIYLLQEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGY---CP-SR-SAVAKFRAEAIYVEFMKQWNVGVYF 95 (432)
Q Consensus 21 l~nsvw~ev~~~l~~~l~~iFapG~Pd~Fh~nY~~t~~Fl~~lE~~---c~-S~-~~v~~lR~~~~y~~F~~rWnLpVYF 95 (432)
+.+++.+.+.+.|...++. ...+|..|.--=-..+.|=++|-.. .+ .. ..+.-|- ++.+ ..+| .
T Consensus 70 fi~~ll~~~~~Kl~~~l~~--~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~-~~~~---~~~W-----l 138 (494)
T PF04437_consen 70 FIRGLLPPVREKLRSDLPE--LLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLC-QPDW---FDRW-----L 138 (494)
T ss_dssp HHHHHHHHHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS--HHH---HHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHHh--hccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhc-chHH---HHHH-----H
Confidence 4578889999999888774 6778888877777788888777663 23 11 1111121 2222 2333 3
Q ss_pred HHHHHHHHHhHHHhhcccccccccCCCCCCCCCcccc-hhhHHHHHHHHhhhccCCccccccch--HHH-HHHHHHHHHH
Q 014045 96 SLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALT-LKQSVTLLDSMKSCWRQDVFLLPCSD--KFL-RLSLQLLSRY 171 (432)
Q Consensus 96 QLRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~-l~~s~~l~~~l~~cWs~~Vfl~~L~~--rFw-kLtLQllsRy 171 (432)
++..+.-..++++.++.+.--....... .....+.. ...+..+..-|+..=+.---||.+.| ||+ ++-+.+|..|
T Consensus 139 ~~E~~~a~~r~~~i~~s~~aw~~~~~~~-~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~ 217 (494)
T PF04437_consen 139 NAEKEFALERFDEIISSPDAWQIDYDDV-EADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDY 217 (494)
T ss_dssp HHHHHHHHHHHH---------------H-TTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcccchhhhhhhccc-cCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence 3443333445555444221000000000 00111111 11222222222222222233555555 458 8889999999
Q ss_pred HHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHHhH-----HHHHHHHHhhccCCh---hhHHHHHH
Q 014045 172 SNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSG-----DYLTHVLQLLSSCSS---EVLDLVKQ 243 (432)
Q Consensus 172 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~l~~Di~~L~~~i~~-----~~~~~i~~~l~~~~~---~~~~~~~~ 243 (432)
...+.+.+.+-... +++ ..........+.++.++.=++-+...+.. .|++.-.......+. +.......
T Consensus 218 ~~~L~~~~~~~~~~-~s~--~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~ 294 (494)
T PF04437_consen 218 HDRLSQSLEAFESS-TST--LASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSS 294 (494)
T ss_dssp HHHHHHHHHHHHHT-------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc-ccc--hhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccC
Confidence 98888775543210 011 11111122345577777666666666654 223100000000000 00000001
Q ss_pred ----HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCC-----CCCCCCCcchHhhhHhHHHHHhcc
Q 014045 244 ----SILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNK-----PLPVRHSPYVSGVLRPLKTLLEGE 314 (432)
Q Consensus 244 ----~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk-----~~Pt~~S~YV~~il~PL~~F~~~~ 314 (432)
.+.+....++.+...+.+.|+..+...-...|+.=..... |+.- +.|..+|+-....|.-|+..+..-
T Consensus 295 ~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~---W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L 371 (494)
T PF04437_consen 295 EEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQ---WSSIESPSDSSPLSPSPELVPALSLLRSRLSFL 371 (494)
T ss_dssp --S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--G---GGT-------------GGGHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC---CCCcccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 2445555566666666666666666666666655333221 2222 346888999999999999888766
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 014045 315 RAMTYLTPEAKNELLLDAATQITSRYHE 342 (432)
Q Consensus 315 ~~~~~l~~e~~~~~~~~v~~~vt~~Y~~ 342 (432)
.. .|++.....+...+++.+...+.+
T Consensus 372 ~~--~L~~~~f~~i~r~ia~~l~~~l~~ 397 (494)
T PF04437_consen 372 ER--SLPPADFRRIWRRIASKLDDYLWE 397 (494)
T ss_dssp HT--S--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HcCHHHHHHHHHHHHHHHHHHHHH
Confidence 55 688888888888888888877766
No 11
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.50 E-value=5.5e+02 Score=29.06 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhccc
Q 014045 259 VINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGER 315 (432)
Q Consensus 259 l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~ 315 (432)
....+|+.+...|...|..+.-. ||+|=.--+.-|+||+++..-+.+|.....
T Consensus 546 s~q~lv~D~e~a~~~~lt~msk~----~~~~l~~vgDQss~v~s~~~h~~q~~~~i~ 598 (793)
T KOG2180|consen 546 SLQFLVQDLENALDPDLTPMSKM----QWQNLEGVGDQSSYVSSLNFHLSQFVPLIR 598 (793)
T ss_pred hHHHHHHHHHHhhCcccChHHHH----HHHHhcCccccchhhHHHHHHHHhhhHHHH
Confidence 34568888999998888876543 377777777999999999988888875443
No 12
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=42.48 E-value=1.4e+02 Score=26.90 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHHHHHhhhhccchhhhhccCCC--CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014045 269 EKAVEDLRQLKGITATYRMTNKP--LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAE 346 (432)
Q Consensus 269 ~~c~~~Lk~v~~Ip~~YR~Tnk~--~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~e 346 (432)
++|...|.-++ -++-+|. +|-..|-||++=|.-...|+-+.+.|=++.. -.++..+.|...+.=
T Consensus 47 ~~~~~aln~~~-----~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK---------~~e~akdyfkRKve~ 112 (153)
T KOG3048|consen 47 EESIAALNDVQ-----AANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEK---------DAEDAKDYFKRKVEY 112 (153)
T ss_pred HHHHHHHhhcc-----cCCCCCeEEEecccceeccceeccccceeEeccCceEEee---------chHHHHHHHHHHHHH
Confidence 45766666322 2455776 8999999999999999999976655523321 122233334444444
Q ss_pred HHHHHHHhHHHHHH
Q 014045 347 LISVARKTESSLLK 360 (432)
Q Consensus 347 vL~sv~KtEeSL~R 360 (432)
+-..+.+.|.-++.
T Consensus 113 l~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 113 LTKQIEQIEGILKE 126 (153)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455556665554
No 13
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=39.64 E-value=32 Score=36.13 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhccchhhHHH
Q 014045 49 FLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLR 98 (432)
Q Consensus 49 Fh~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~F~~rWnLpVYFQLR 98 (432)
|+-=+-+-++.++++=+ -+++.=-+..=++.++.+|.|+||.|||-=+.
T Consensus 271 Fy~ifh~~LN~~AEltr-FgDR~FY~DWWNs~s~~eywR~WN~PVH~fl~ 319 (410)
T PLN03242 271 FYCFFHLWLNIVAELLC-FGDREFYKDWWNASEVSEYWRLWNMPVHYWLV 319 (410)
T ss_pred HHHHHHHHHHHHHHHHH-hhhhhhhhhhhccCcHHHHHHHcchHHHHHHH
Confidence 33333333343333322 24444455566788999999999999986654
No 14
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.43 E-value=1.1e+02 Score=34.13 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=47.2
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc
Q 014045 241 VKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE 314 (432)
Q Consensus 241 ~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~ 314 (432)
..+.|.+....|.+++..++...++.+-..-.+..+++-+|-.+-|-|. ..-+..-+=.+++|+||-.|+++.
T Consensus 877 a~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvkgt~-~a~~sva~dad~vl~plmdlldgn 949 (1283)
T KOG1011|consen 877 AGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVKGTG-LAKTSVAQDADAVLEPLMDLLDGN 949 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhcccc-cchhhcccchHHHHHHHHHHHhch
Confidence 3455666666666666666666666555444455556666666666654 233445556689999999999875
No 15
>PLN02401 diacylglycerol o-acyltransferase
Probab=37.88 E-value=36 Score=36.12 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHHhhccchhhHHH
Q 014045 49 FLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLR 98 (432)
Q Consensus 49 Fh~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~F~~rWnLpVYFQLR 98 (432)
|+-=+-+.++.++++=+ .+++.=-+..=++.++.+|.|+||.||+-=|.
T Consensus 296 Fy~ifh~~LN~~AEltr-FgDR~FY~DWWNs~s~~eywR~WN~PVH~fL~ 344 (446)
T PLN02401 296 FYCFFHLWLNILAELLR-FGDREFYKDWWNAKTVEEYWRMWNMPVHKWMV 344 (446)
T ss_pred HHHHHHHHHHHHHHHHh-hhhhhhhhhhhccCcHHHHHHHcchHHHHHHH
Confidence 44444444444443322 24444555666788999999999999986554
No 16
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=36.03 E-value=3.3e+02 Score=24.60 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHH--HHHHHHHHHHH
Q 014045 319 YLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK--ICMQLFLDIQE 396 (432)
Q Consensus 319 ~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dK--Ir~QL~LDv~~ 396 (432)
.++.|.+++++.. +...++.|. .-|..+|+ +.++++|+..+. + .+|.||. ..-++.--.+.
T Consensus 86 ~~T~E~R~~l~k~-~k~~~E~~k----~~iR~iR~--~~~~~lkk~~~~--~--------~~s~D~~~~~~~~iq~l~~~ 148 (165)
T PF01765_consen 86 PPTEERRKELVKQ-AKKIAEEAK----VSIRNIRR--DAMKKLKKLKKS--K--------EISEDDIKKLEKEIQKLTDK 148 (165)
T ss_dssp SSSHHHHHHHHHH-HHHHHHHHH----HHHHHHHH--HHHHHHHHHHHT--T--------SS-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHHHHHHHH----HHHHHHHH--HHHHHHHhhhcc--C--------CCCchhhHHHHHHHHHHHHH
Confidence 4566777666643 445555555 46777876 778888877651 1 2454444 55555555666
Q ss_pred HHHHHHh
Q 014045 397 YGRSLAA 403 (432)
Q Consensus 397 f~~~~~~ 403 (432)
|..+++.
T Consensus 149 ~~~~id~ 155 (165)
T PF01765_consen 149 YIKKIDE 155 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 17
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=34.84 E-value=68 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhccc
Q 014045 333 ATQITSRYHELAAELISVARK----TESSLLKIRQGAQ 366 (432)
Q Consensus 333 ~~~vt~~Y~~~v~evL~sv~K----tEeSL~RLKk~~~ 366 (432)
+.++...|.+.+.|.-.-+.+ -++=|+++||+..
T Consensus 21 L~d~L~EFd~Vvedf~sP~~~r~f~Y~ehL~~mKRrs~ 58 (121)
T PF15151_consen 21 LSDLLCEFDAVVEDFSSPAEKRHFRYDEHLEEMKRRSS 58 (121)
T ss_pred HHHHHHHHHHHHHHhcCchhhccchHHHHHHHHHHhcC
Confidence 455666777766666444555 4899999998763
No 18
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=32.36 E-value=6.5e+02 Score=26.92 Aligned_cols=82 Identities=13% Similarity=0.209 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHHhcC--CccccCCCchHHHHHHHHHHHHHHHHHhhCCCHHHHHH-HhhchhHHHHHHhhccc-hhhHHH
Q 014045 23 IYLLQEVLSAIQKGK--PGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAK-FRAEAIYVEFMKQWNVG-VYFSLR 98 (432)
Q Consensus 23 nsvw~ev~~~l~~~l--~~iFapG~Pd~Fh~nY~~t~~Fl~~lE~~c~S~~~v~~-lR~~~~y~~F~~rWnLp-VYFQLR 98 (432)
+.|=.++...+.+.+ ..||. |+++.|.+.+..+..++..|...+.......+ +...+. ++|+++ -+.--+
T Consensus 152 ~~isn~ii~~~~~~l~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~w~~~~~~vf~~ 225 (579)
T PF08385_consen 152 EKISNQIIQKCQKYLDPSDLFS-GDYDEFIKKLNECIDILESWKETYEEFREQIRELTRKRS-----HPWEFDEKKVFGR 225 (579)
T ss_pred HHHHHHHHHHHHHHhCchhhhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccC-----CCCcccHHHHHHH
Confidence 344444555555544 24787 89999999999999999999887654433221 111111 689998 333334
Q ss_pred HHHHHHhHHHhh
Q 014045 99 FQEIAGALDSAL 110 (432)
Q Consensus 99 fqEIa~~lE~~L 110 (432)
+..+..+++...
T Consensus 226 ~~~f~~Rl~~i~ 237 (579)
T PF08385_consen 226 LDAFKERLEDIK 237 (579)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 19
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=31.81 E-value=3.6e+02 Score=24.50 Aligned_cols=101 Identities=17% Similarity=0.218 Sum_probs=63.0
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH-------HhhhhccchhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc
Q 014045 242 KQSILEGGKSLSSMLPVVINTIVDALVEKAVE-------DLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE 314 (432)
Q Consensus 242 ~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~-------~Lk~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~ 314 (432)
.+.|..+...-+...|.+...+|..|.++... -||.--..+.-|+.+++. ..|.+-.
T Consensus 32 ~q~Lr~Af~kAE~~~PGft~d~v~~ll~~~~~~vnl~es~LR~~~~~~~~~~~~~~~----------------~~~~el~ 95 (154)
T PF06840_consen 32 IQTLRAAFTKAEKSSPGFTDDFVKGLLERSKLNVNLTESLLRMAGSAPQEYRLSRRE----------------PEFQELN 95 (154)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHTHHHHHHHHHHHHHHTTGGTTTTS-SS-S----------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCCCChhHHHHHhccccccchhcCCCc----------------HHHHHHH
Confidence 45566666667778888888888888887622 344444445566665543 2233211
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHh
Q 014045 315 RAMTYLTPEAKNELLLDAATQITS--RYHELAAELISVARKTESSLLKIRQ 363 (432)
Q Consensus 315 ~~~~~l~~e~~~~~~~~v~~~vt~--~Y~~~v~evL~sv~KtEeSL~RLKk 363 (432)
. .......++..+=+++++ .|.+.++|+=+++||.=+++.-.=+
T Consensus 96 ~-----~A~~LK~iLSrIPdei~dR~~FL~tIK~IAsaIK~lLdAvn~v~~ 141 (154)
T PF06840_consen 96 K-----RATALKRILSRIPDEISDRRTFLETIKEIASAIKKLLDAVNEVFK 141 (154)
T ss_dssp H-----HHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHhcCcHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112345566666666664 5899999999999998888877544
No 20
>PHA00442 host recBCD nuclease inhibitor
Probab=30.18 E-value=86 Score=23.38 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHHHH----HHHHHHHHhcCCCCCCCccHHHHHHhcccccc
Q 014045 380 VSDTDKICMQLFLDI----QEYGRSLAALGVQAADIPPYRSLWQCVAPSDR 426 (432)
Q Consensus 380 ~SD~dKIr~QL~LDv----~~f~~~~~~lgv~~~~~~~~~~L~~~V~~~~~ 426 (432)
++-+.==-+|.|+|- ..|.+.+++.| +++++.|.+..++|+...+
T Consensus 10 itRd~wnd~q~yidsLek~~~~L~~Lea~G--VDNW~Gy~eA~emv~~edd 58 (59)
T PHA00442 10 ITRDAWNDMQGYIDSLEKDNEFLKALRACG--VDNWDGYMDAVEMVAEEDD 58 (59)
T ss_pred ecHHHHHHHHHHHHHHHHhhHHHHHHHHcC--CcchhhHHHHHHHHhhhcc
Confidence 443333445666653 45677778888 5689999999999987543
No 21
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.87 E-value=1.1e+02 Score=27.41 Aligned_cols=77 Identities=14% Similarity=0.311 Sum_probs=46.3
Q ss_pred HHHHHHhhhhccchhhhhccCCC--CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014045 269 EKAVEDLRQLKGITATYRMTNKP--LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAE 346 (432)
Q Consensus 269 ~~c~~~Lk~v~~Ip~~YR~Tnk~--~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~e 346 (432)
..|.+.|+.+. ++++ +|=.+|-||+.-+.+-..++-+.+.+-++. .-+++..+.|...+++
T Consensus 37 ~~~ie~L~~l~--------~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~VE---------k~~~eA~~~~~~ri~~ 99 (144)
T PRK14011 37 LKSIESMEGLK--------TSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYLE---------KDVSEVIEDFKKSVEE 99 (144)
T ss_pred HHHHHHHHccC--------CCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEEE---------ecHHHHHHHHHHHHHH
Confidence 45666666433 3566 899999999999888877776554441221 1123334555555555
Q ss_pred HHHHHHHhHHHHHHHH
Q 014045 347 LISVARKTESSLLKIR 362 (432)
Q Consensus 347 vL~sv~KtEeSL~RLK 362 (432)
+=.+.+++++.|.++.
T Consensus 100 l~~~~~~l~~~i~~~~ 115 (144)
T PRK14011 100 LDKTKKEGNKKIEELN 115 (144)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555556666555544
No 22
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=29.21 E-value=92 Score=30.65 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--hc---CCCCCCCccHHHHHHhcccc
Q 014045 384 DKICMQLFLDIQEYGRSLA--AL---GVQAADIPPYRSLWQCVAPS 424 (432)
Q Consensus 384 dKIr~QL~LDv~~f~~~~~--~l---gv~~~~~~~~~~L~~~V~~~ 424 (432)
|+--.-|..--.+|-+|.+ +| |+.......++-|.++|++.
T Consensus 199 e~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~nhLrCL~dFVeaQ 244 (375)
T KOG3725|consen 199 EQAEQELRVAQAEFDRQAEITRLLLEGISSTHNNHLRCLRDFVEAQ 244 (375)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 3444445555567766654 33 99999999999999999873
No 23
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=26.75 E-value=1.7e+02 Score=32.37 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHhhhccCCccccccchHHHHHHHHHHHHHHHHHhhhh
Q 014045 133 LKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGL 179 (432)
Q Consensus 133 l~~s~~l~~~l~~cWs~~Vfl~~L~~rFwkLtLQllsRy~~w~~~~~ 179 (432)
..+|..++.-|+.||.++|||..++|=-.+-+-.-.+-|..++..+.
T Consensus 309 ~~~Serfl~dLE~r~e~ni~i~dicDiv~~ha~~~f~vYv~Y~tNQ~ 355 (695)
T KOG3523|consen 309 REVSERFLCDLEARLEENIFIDDICDIVEDHAAKHFSVYVKYCTNQV 355 (695)
T ss_pred HHHHHHHHHHHHHHHHhCchhhHHHHHHHHhcccccceeehhccchH
Confidence 56889999999999999999999998777777666667777776543
No 24
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=26.69 E-value=4e+02 Score=23.36 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=27.1
Q ss_pred cCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014045 288 TNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAK-NELLLDAATQITSRYHELAAEL 347 (432)
Q Consensus 288 Tnk~~Pt~~S~YV~~il~PL~~F~~~~~~~~~l~~e~~-~~~~~~v~~~vt~~Y~~~v~ev 347 (432)
..|+.|.+-+.-+...|.-|++|+...+.| ++.+.. +.=--+-+..+..-|..-..++
T Consensus 75 ~~~~Lt~~q~~~l~~~L~~L~~FFhA~G~G--l~~~~L~ks~~yq~L~~~l~ly~~sT~~L 133 (137)
T PF10540_consen 75 SQRPLTPKQCDRLFKWLDTLKDFFHAEGNG--LPLEFLEKSPEYQSLRYILSLYDQSTDEL 133 (137)
T ss_dssp -------TCHHHHHHHHHHHHHHHHCCCTS----HHHHHC-HHHHHHHHHHHHT-------
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhCCCCC--CCHHHHccCHHHHHHHHHHHHhcCCHHHH
Confidence 457888888999999999999999776654 565544 2222233344444444443333
No 25
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=26.38 E-value=2.6e+02 Score=25.20 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=9.5
Q ss_pred HHHHHHhhh-hccchhhh
Q 014045 269 EKAVEDLRQ-LKGITATY 285 (432)
Q Consensus 269 ~~c~~~Lk~-v~~Ip~~Y 285 (432)
+.|...|+. +.++||+=
T Consensus 17 ~~Si~~L~~~~~D~pRL~ 34 (153)
T PF08287_consen 17 QSSIETLDSGTSDFPRLT 34 (153)
T ss_pred HHHHHHHHhcCcccHHHH
Confidence 356666665 55555543
No 26
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=26.06 E-value=5.6e+02 Score=24.13 Aligned_cols=54 Identities=26% Similarity=0.399 Sum_probs=41.3
Q ss_pred cchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 014045 298 PYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQ 366 (432)
Q Consensus 298 ~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~ 366 (432)
.+-..++.||+...+.+. +++....++|....+.--..++|.+.-++|++|+++
T Consensus 80 ~~~~~li~pLe~~~e~d~---------------k~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~ 133 (219)
T PF08397_consen 80 AFHSELIQPLEKKLEEDK---------------KYITQLEKDYEKEYKRKRDELKKAESELKKLRKKSR 133 (219)
T ss_dssp HHHHHTHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHH---------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345567788877765442 345667788888888889999999999999998876
No 27
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.49 E-value=1.2e+03 Score=26.56 Aligned_cols=94 Identities=19% Similarity=0.251 Sum_probs=49.5
Q ss_pred HHHHHHH----hhccCChhhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhccchhhhhc-cCCCCCCCC
Q 014045 222 YLTHVLQ----LLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRM-TNKPLPVRH 296 (432)
Q Consensus 222 ~~~~i~~----~l~~~~~~~~~~~~~~l~e~~~~L~~~~~~l~~~iv~~l~~~c~~~Lk~v~~Ip~~YR~-Tnk~~Pt~~ 296 (432)
+++++.+ .+...+++++--+..++.+++..|.+ .+...||..|..+- .=.||+ |....||+.
T Consensus 886 llE~l~qdhm~Fi~nL~~~vfm~ll~Si~sGLt~lDt-----------~v~ssccsslD~i~--tYlfk~itr~~~p~~~ 952 (1082)
T KOG1410|consen 886 LLEVLTQDHMPFITNLEPDVFMYLLRSISSGLTSLDT-----------IVSSSCCSSLDTIV--TYLFKRITRSTKPTRK 952 (1082)
T ss_pred HHHHHHhccchhhhcCcHHHHHHHHHHHHhccchhhH-----------HHHhHHHHHHHHHH--HHHHHHHhccCCCcCc
Confidence 4555544 23345566665666777777666655 44567888888763 345553 444455554
Q ss_pred CcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHH
Q 014045 297 SPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQI 336 (432)
Q Consensus 297 S~YV~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~v 336 (432)
-.--+.-.+-++.-. . .|++.++++..+++-+
T Consensus 953 ~~~tpa~~r~l~~i~----q----~Pdil~qml~tl~~ii 984 (1082)
T KOG1410|consen 953 VGMTPAGDRFLHAIQ----Q----HPDILQQMLSTLINII 984 (1082)
T ss_pred CCCChhHHHHHHHHH----h----ChHHHHHHHHHHHHHH
Confidence 443333322222221 1 2455666665555443
Done!