Query 014045
Match_columns 432
No_of_seqs 115 out of 158
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 04:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014045.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014045hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lvfa_ a.47.2.1 (A:) Syntaxin 39.0 37 0.0027 25.4 6.7 58 340-404 4-61 (106)
2 d1nvpb_ a.32.1.1 (B:) Large ch 35.3 32 0.0023 21.8 4.6 29 336-364 2-37 (43)
3 d1dd5a_ d.67.3.1 (A:) Ribosome 30.0 1.2E+02 0.0088 24.6 9.1 68 318-402 102-171 (184)
4 d1is1a_ d.67.3.1 (A:) Ribosome 29.8 1.4E+02 0.0099 24.3 9.9 108 274-403 50-173 (185)
5 d1ek8a_ d.67.3.1 (A:) Ribosome 27.4 1.4E+02 0.011 24.2 9.2 69 318-403 103-173 (185)
6 d1wqga1 d.67.3.1 (A:2-184) Rib 25.8 1.6E+02 0.012 23.8 9.9 69 318-403 102-172 (183)
7 d1y2oa1 a.238.1.3 (A:1-248) BA 24.6 1.8E+02 0.013 24.0 9.7 52 300-366 98-149 (248)
8 d1gzsb_ a.168.1.1 (B:) GEF dom 22.7 21 0.0016 28.6 2.5 32 74-105 111-159 (165)
9 d1yyva1 a.4.5.69 (A:9-122) Put 15.9 16 0.0012 28.0 0.2 35 64-107 9-48 (114)
10 d1nh2b_ a.32.1.1 (B:) Large ch 15.1 56 0.0041 20.9 2.8 19 335-353 3-21 (46)
No 1
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=39.03 E-value=37 Score=25.35 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 014045 340 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 404 (432)
Q Consensus 340 Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~l 404 (432)
|+....||..++.+++.-+++..+.+.. +++.. ...-+-.+.+|.-.+.....+++.|
T Consensus 4 F~~v~~EVq~s~~~~~~l~~~w~~~~~~---~~~~~----~~e~~~~~~eL~~~l~siewdL~dL 61 (106)
T d1lvfa_ 4 FFVVKGEVQKAVNTAQGLFQRWTELLQG---PSAAT----REEIDWTTNELRNNLRSIEWDLEDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---TTSCC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCC----cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 7888999999999999999998876651 11100 1122346777776666655555433
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.26 E-value=32 Score=21.83 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-------HHHHHHHHhc
Q 014045 336 ITSRYHELAAELISVARKT-------ESSLLKIRQG 364 (432)
Q Consensus 336 vt~~Y~~~v~evL~sv~Kt-------EeSL~RLKk~ 364 (432)
|.+-|...+.||+.+||.- |..|..||+.
T Consensus 2 V~kvY~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~ 37 (43)
T d1nvpb_ 2 VPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTL 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4456777777777777652 4566666653
No 3
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=29.98 E-value=1.2e+02 Score=24.64 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=39.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHH--HHHH
Q 014045 318 TYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLF--LDIQ 395 (432)
Q Consensus 318 ~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~--LDv~ 395 (432)
|.++.|.+++++ +.+...++.+.. -+..+|+ +.++++|+.++. .++|.||.=++|-. -=.+
T Consensus 102 P~lT~E~R~elv-K~~k~~~E~aKv----~iR~iR~--~~~~~lk~~~k~----------~~iseD~~k~~~~~iq~ltd 164 (184)
T d1dd5a_ 102 PSPTTEQREKWV-KKAKEIVEEGKI----AIRNIRR--EILKKIKEDQKE----------GLIPEDDAKRLENEIQKLTD 164 (184)
T ss_dssp CCCCHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHH----------TSSCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHhhcc----------CCCChhHHHHHHHHHHHHHH
Confidence 356777776665 445555555554 5666774 667777776651 13777777665533 2344
Q ss_pred HHHHHHH
Q 014045 396 EYGRSLA 402 (432)
Q Consensus 396 ~f~~~~~ 402 (432)
.|...++
T Consensus 165 ~~~~~id 171 (184)
T d1dd5a_ 165 EFIEKLD 171 (184)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 4
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=29.79 E-value=1.4e+02 Score=24.33 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=55.9
Q ss_pred Hhhhhccch----hhhhccCCCCCCCCCcchHhhhHhHHHHHhccc---c-------ccCCCHHHHHHHHHHHHHHHHHH
Q 014045 274 DLRQLKGIT----ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGER---A-------MTYLTPEAKNELLLDAATQITSR 339 (432)
Q Consensus 274 ~Lk~v~~Ip----~~YR~Tnk~~Pt~~S~YV~~il~PL~~F~~~~~---~-------~~~l~~e~~~~~~~~v~~~vt~~ 339 (432)
+|+++..|. ++.--| |-.++. |..|.+-+..=.-+.. . -|.++.|.+++++ +.+...++.
T Consensus 50 pL~~lA~Is~~~~~~l~I~----p~D~~~-v~~IekAI~~s~lglnp~~dg~~Iri~iP~lT~E~R~elv-K~~k~~~E~ 123 (185)
T d1is1a_ 50 PLNQVANVVAEDARTLAIT----VFDKEL-TQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLV-KIVRGEAEG 123 (185)
T ss_dssp EGGGTEEEEEEETTEEEEE----ESSTTT-HHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHH-HHHHHHHHH
T ss_pred cHHHHhhhccCCCceEEEE----ecccch-HHHHHHHHHhcccccccccCCceeeecCCCCcHHHHHHHH-HHHHHHHHH
Confidence 666766662 222222 444443 6666666654321110 0 1456778776666 334444555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHHHHHHHHh
Q 014045 340 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQEYGRSLAA 403 (432)
Q Consensus 340 Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~Q--L~LDv~~f~~~~~~ 403 (432)
+.. -+..+|+ +..+.+|+..+ +.++|.||.=++| +.-=.+.|...+++
T Consensus 124 akv----~iRniRr--~~~~~ikk~~k----------~~~iseD~~k~~~~~iq~ltd~~~~~id~ 173 (185)
T d1is1a_ 124 GRV----AVRNIRR--DANNDLKALLK----------DKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HHH----HHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHH--HHHHHHHhhhc----------cCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 5667764 55566665554 1136766665544 44445566666654
No 5
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=27.35 E-value=1.4e+02 Score=24.16 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=38.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHH
Q 014045 318 TYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQ 395 (432)
Q Consensus 318 ~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~Q--L~LDv~ 395 (432)
|.++.|.+++++ +.+...++.+. .-+..+|+ +....+|+..+ +.++|.||.=++| +.-=.+
T Consensus 103 P~lT~E~R~elv-K~~k~~~E~~k----v~iR~iRr--~~~~~ik~~~k----------~~~iseD~~k~~~~~iq~ltd 165 (185)
T d1ek8a_ 103 PPLTEERRKDLT-KIVRGEAEQAR----VAVRNVRR--DANDKVKALLK----------DKEISEDDDRRSQDDVQKLTD 165 (185)
T ss_dssp CCCCHHHHHHHH-HHHHHHHHHHH----HHHHHHHH--HHHHHHHHHHH----------HSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH-HHHHHHHHHHH----HHHHHHHH--HHHHHHHhhcc----------cCCCChhHHHHHHHHHHHHHH
Confidence 356788777765 44544444444 45666653 55555555543 1136767665544 333455
Q ss_pred HHHHHHHh
Q 014045 396 EYGRSLAA 403 (432)
Q Consensus 396 ~f~~~~~~ 403 (432)
.|..++++
T Consensus 166 ~~~~~id~ 173 (185)
T d1ek8a_ 166 AAIKKIEA 173 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
No 6
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.82 E-value=1.6e+02 Score=23.82 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=39.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHH--HHH
Q 014045 318 TYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFL--DIQ 395 (432)
Q Consensus 318 ~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~L--Dv~ 395 (432)
|.++.|.+++++ +.+...++.+.. -+..+|+ +..+++|+.++ +..+|.||.=++|-.+ =.+
T Consensus 102 P~lT~E~R~elv-K~ak~~~E~aKv----~iRniR~--~~~~~lk~~~k----------~~~iseD~~~~~~~~iq~ltd 164 (183)
T d1wqga1 102 PQLTEERRRELV-KQAKHKGEEAKV----SVRNIRR--KAMEELHRIRK----------EGEAGEDEVGRAEKDLDKTTH 164 (183)
T ss_dssp CCCCHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHH-HHHHHHHHHHHH----HHHHHHH--HHHHHHHHhcc----------cCCCChhHHHHHHHHHHHHHH
Confidence 356777776665 344444454444 5677773 56666666554 1136777776655333 345
Q ss_pred HHHHHHHh
Q 014045 396 EYGRSLAA 403 (432)
Q Consensus 396 ~f~~~~~~ 403 (432)
.|..++++
T Consensus 165 ~~~~~id~ 172 (183)
T d1wqga1 165 QYVTQIDE 172 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56665543
No 7
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.61 E-value=1.8e+02 Score=23.97 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=37.8
Q ss_pred hHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Q 014045 300 VSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQ 366 (432)
Q Consensus 300 V~~il~PL~~F~~~~~~~~~l~~e~~~~~~~~v~~~vt~~Y~~~v~evL~sv~KtEeSL~RLKk~~~ 366 (432)
..+++.||.+|++++.. .+.+.-++|....++.-...+|....++|++++++
T Consensus 98 ~~~~i~PL~~~~~~d~k---------------~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~ 149 (248)
T d1y2oa1 98 HNELLTQLEQKVELDSR---------------YLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQ 149 (248)
T ss_dssp HHTTHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45799999999975421 23345566766666677788899999999888765
No 8
>d1gzsb_ a.168.1.1 (B:) GEF domain of SopE toxin {Salmonella typhimurium [TaxId: 90371]}
Probab=22.70 E-value=21 Score=28.55 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=24.5
Q ss_pred HHHhhchhHHHHH-----------------HhhccchhhHHHHHHHHHh
Q 014045 74 AKFRAEAIYVEFM-----------------KQWNVGVYFSLRFQEIAGA 105 (432)
Q Consensus 74 ~~lR~~~~y~~F~-----------------~rWnLpVYFQLRfqEIa~~ 105 (432)
.+|++++.|.+|+ .+|..|.=||++.+.|+..
T Consensus 111 h~~~n~~qq~~fk~YArq~~m~lVap~~~e~~~~tp~~F~~tve~i~~~ 159 (165)
T d1gzsb_ 111 RMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANK 159 (165)
T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHGGGGTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHhhh
Confidence 4566677777665 6899999999998888753
No 9
>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}
Probab=15.91 E-value=16 Score=28.02 Aligned_cols=35 Identities=26% Similarity=0.643 Sum_probs=25.8
Q ss_pred HhhCCCHHHHHHHhhchhHHHHHHhhccchhhHH-----HHHHHHHhHH
Q 014045 64 EGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSL-----RFQEIAGALD 107 (432)
Q Consensus 64 E~~c~S~~~v~~lR~~~~y~~F~~rWnLpVYFQL-----RfqEIa~~lE 107 (432)
...||-...+..|- .||.+.|...| ||.||...++
T Consensus 9 ~~~Cpv~~~l~~ig---------~kW~l~Il~~L~~g~~RF~el~~~l~ 48 (114)
T d1yyva1 9 AEQCPSREVLKHVT---------SRWGVLILVALRDGTHRFSDLRRKMG 48 (114)
T ss_dssp STTCTHHHHHHHHH---------SHHHHHHHHHGGGCCEEHHHHHHHST
T ss_pred cCCCCHHHHHHHHc---------CCCHHHHHHHHhcCCCCHHHHHHHcc
Confidence 34688766666544 49999999887 7888877654
No 10
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.08 E-value=56 Score=20.89 Aligned_cols=19 Identities=11% Similarity=0.330 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014045 335 QITSRYHELAAELISVARK 353 (432)
Q Consensus 335 ~vt~~Y~~~v~evL~sv~K 353 (432)
.+..-|...+.||+.+||.
T Consensus 3 ~v~~vY~~VI~dVI~~vR~ 21 (46)
T d1nh2b_ 3 EASRVYEIIVESVVNEVRE 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667788888888887774
Done!