BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014046
         (432 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LN1|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
          Length = 214

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 23/222 (10%)

Query: 127 SFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDV 186
           SF  E   E    L +    G  W Q++  ++    Y+    D + G  +Y+   V ED 
Sbjct: 7   SFSEEQFWEACAELQQPALAGADW-QLLVETSGISIYRL--LDKKTGLYEYKVFGVLEDC 63

Query: 187 TPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR- 245
           +P ++ D + D D R +WD    Y   L E    G  VV W  K+PF  S+R+Y+  R+ 
Sbjct: 64  SPTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQR 120

Query: 246 --IWESGRSYYCVTKGVPYTSVPR---RNKPKRVDLFYSSWYIRAVESRRGDGQLTACEV 300
             +   GR  + +      TS+P+   R+   RV  +  S    A+ES   DG+    +V
Sbjct: 121 RDLDMEGRKIHVIL--ARSTSMPQLGERSGVIRVKQYKQS---LAIES---DGK-KGSKV 171

Query: 301 ILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE 340
            +++ ++ G  IP  +     + G+   +K    A + Y+K+
Sbjct: 172 FMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK 213


>pdb|1LN2|A Chain A, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN2|B Chain B, Crystal Structure Of Human Phosphatidylcholine Transfer
           Protein In Complex With Dilinoleoylphosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN3|A Chain A, Structure Of Human Phosphatidylcholine Transfer Protein In
           Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
           (Seleno-Met Protein)
 pdb|1LN3|B Chain B, Structure Of Human Phosphatidylcholine Transfer Protein In
           Complex With Palmitoyl-Linoleoyl Phosphatidylcholine
           (Seleno-Met Protein)
          Length = 214

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 6/119 (5%)

Query: 127 SFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDV 186
           SF  E   E    L +    G  W Q++  ++    Y+    D + G  +Y+   V ED 
Sbjct: 7   SFSEEQFWEACAELQQPALAGADW-QLLVETSGISIYRL--LDKKTGLYEYKVFGVLEDC 63

Query: 187 TPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR 245
           +P ++ D + D D R +WD    Y   L E    G  VV W  K+PF  S+R+Y+  R+
Sbjct: 64  SPTLLADIYXDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPXSNRDYVYLRQ 119


>pdb|3B9K|L Chain L, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
           156.7 Fab
 pdb|3B9K|C Chain C, Crystal Structure Of Cd8alpha-Beta In Complex With Yts
           156.7 Fab
          Length = 213

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 6/137 (4%)

Query: 220 TGTMVVQWVRKFPFFCSDREYIIGRRIWESG--RSYYCVTKGVPYT-SVPRRNKPKRVDL 276
           T T+V     +F    S R+Y       ES    SYYC+     YT     + + KR D 
Sbjct: 51  TSTLVSGTPSRFSGSGSGRDYTFSISSVESEDIASYYCLQYDTLYTFGAGTKLELKRADA 110

Query: 277 FYS-SWYIRAVESRRGDGQLTACEVILFHHEDMGIPWEIAKLGVRQGMWGAVKKFDPALR 335
             + S +  ++E     G    C V  F+  D+ + W+I     R G+  +V   D    
Sbjct: 111 APTVSIFPPSMEQLTSGGATVVCFVNNFYPRDISVKWKIDGSEQRDGVLDSVTDQDSKDS 170

Query: 336 AYVKERASGASLSRCAY 352
            Y    +S  SL++  Y
Sbjct: 171 TY--SMSSTLSLTKVEY 185


>pdb|3LNN|A Chain A, Crystal Structure Of Zneb From Cupriavidus Metallidurans
 pdb|3LNN|B Chain B, Crystal Structure Of Zneb From Cupriavidus Metallidurans
          Length = 359

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)

Query: 126 SSFVTEDDLEHL--CRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVY 183
           +S +T  DL H+      +EKD G V++      + T+ + A+  DP+ G  +Y  + + 
Sbjct: 197 ASLMTVADLSHVFVTANAQEKDLGHVYVG----QSATVKFDAYD-DPQPGKVRYVGQILD 251

Query: 184 EDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMV 224
            D     VR  F + D RL+   M   A+ L + P+ G +V
Sbjct: 252 ADTRTTKVRMVFDNPDGRLRP-GMFAQATFLSQ-PHEGIVV 290


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,895,271
Number of Sequences: 62578
Number of extensions: 529526
Number of successful extensions: 1147
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1143
Number of HSP's gapped (non-prelim): 5
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)