BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014046
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R1R3|STAR7_MOUSE StAR-related lipid transfer protein 7, mitochondrial OS=Mus
musculus GN=Stard7 PE=2 SV=2
Length = 373
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 71/154 (46%), Gaps = 9/154 (5%)
Query: 144 KDGGPVWIQMMDRSTPTMAYQAWRRDPENGPP--QYRSRTVYEDVTPEMVRDFFWDDDSR 201
KD W +MD+ ++ WRR P G QYR Y DVTP + D + R
Sbjct: 138 KDKEEPWEMVMDKKH----FKLWRR-PITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYR 192
Query: 202 LKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR--IWESGRSYYCVTKG 259
KWD ++I +E +G+ V+ WV FP+ R+Y+ RR + + V++
Sbjct: 193 KKWDALVIKLEVIERDAVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNVMVLVSRA 252
Query: 260 VPYTSVPRRNKPKRVDLFYSSWYIRAVESRRGDG 293
V + SVP + RV + S IR +S +G
Sbjct: 253 VEHPSVPESPEFVRVRSYESQMVIRPHKSFDENG 286
>sp|Q9NQZ5|STAR7_HUMAN StAR-related lipid transfer protein 7, mitochondrial OS=Homo
sapiens GN=STARD7 PE=1 SV=2
Length = 370
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 150 WIQMMDRSTPTMAYQAWRRDPENGPP--QYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDM 207
W +MD+ ++ WRR P G QYR Y DVTP + D + R KWD +
Sbjct: 141 WEMVMDKK----HFKLWRR-PITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDAL 195
Query: 208 LIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR--IWESGRSYYCVTKGVPYTSV 265
+I +E +G+ V+ WV FP+ R+Y+ RR + + V++ V + SV
Sbjct: 196 VIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQENNMMVLVSRAVEHPSV 255
Query: 266 PRRNKPKRVDLFYSSWYIRAVESRRGDG 293
P + RV + S IR +S +G
Sbjct: 256 PESPEFVRVRSYESQMVIRPHKSFDENG 283
>sp|Q9UKL6|PPCT_HUMAN Phosphatidylcholine transfer protein OS=Homo sapiens GN=PCTP PE=1
SV=1
Length = 214
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 23/222 (10%)
Query: 127 SFVTEDDLEHLCRLVEEKDGGPVWIQMMDRSTPTMAYQAWRRDPENGPPQYRSRTVYEDV 186
SF E E L + G W Q++ ++ Y+ D + G +Y+ V ED
Sbjct: 7 SFSEEQFWEACAELQQPALAGADW-QLLVETSGISIYRL--LDKKTGLYEYKVFGVLEDC 63
Query: 187 TPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWVRKFPFFCSDREYIIGRR- 245
+P ++ D + D D R +WD Y L E G VV W K+PF S+R+Y+ R+
Sbjct: 64 SPTLLADIYMDSDYRKQWDQ---YVKELYEQECNGETVVYWEVKYPFPMSNRDYVYLRQR 120
Query: 246 --IWESGRSYYCVTKGVPYTSVPR---RNKPKRVDLFYSSWYIRAVESRRGDGQLTACEV 300
+ GR + + TS+P+ R+ RV + S A+ES DG+ +V
Sbjct: 121 RDLDMEGRKIHVIL--ARSTSMPQLGERSGVIRVKQYKQS---LAIES---DGK-KGSKV 171
Query: 301 ILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE 340
+++ ++ G IP + + G+ +K A + Y+K+
Sbjct: 172 FMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKK 213
>sp|P53809|PPCT_RAT Phosphatidylcholine transfer protein OS=Rattus norvegicus GN=Pctp
PE=2 SV=2
Length = 214
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 16/178 (8%)
Query: 169 DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWV 228
D G +Y+ V E P ++ D + D D R KWD Y L E G MV W
Sbjct: 46 DQSTGLYEYKVFGVLESCIPSLLADVYMDLDYRKKWDQ---YVKELYEKSFDGQMVAYWE 102
Query: 229 RKFPFFCSDREYIIGRRIWE---SGRSYYCV-TKGVPYTSVPRRNKPKRVDLFYSSWYIR 284
K+PF S+R+Y+ R+ + GR Y V + + P ++ RV + S
Sbjct: 103 VKYPFPLSNRDYVYTRQRRDLDVDGRKIYVVLAQNISVPQFPEKSGVIRVKQYKQSL--- 159
Query: 285 AVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE 340
A+ES DG+ V +++ ++ G IP + + G+ +K A + Y K+
Sbjct: 160 AIES---DGK-KGSRVFMYYFDNPGGQIPSWLINWAAKNGVPSFLKDMVKACQNYHKK 213
>sp|P02720|PPCT_BOVIN Phosphatidylcholine transfer protein OS=Bos taurus GN=PCTP PE=1
SV=1
Length = 213
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 169 DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWV 228
D + G Y+ V ED P+++ D + D R +WD Y L E +G VV W
Sbjct: 46 DQQTGLYAYKVFGVLEDCLPDLLADVYMDLAYRKQWDQ---YVKELYEKECSGETVVYWQ 102
Query: 229 RKFPFFCSDREYIIGRR----IWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284
K+PF S+R+Y+ R+ +E + + + + P ++ RV + I+
Sbjct: 103 VKYPFPMSNRDYVYVRQRQELDFEGQKVHVILAQSTSEPQFPEKSGVIRVKHYKQRLAIQ 162
Query: 285 AVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVK 339
+ + +RG +V +++ ++ G IP + + G+ +K A + Y K
Sbjct: 163 S-DGKRGS------KVFMYYFDNPGGQIPSWVINWAAKNGVPNFLKDMVKACQNYKK 212
>sp|P53808|PPCT_MOUSE Phosphatidylcholine transfer protein OS=Mus musculus GN=Pctp PE=1
SV=2
Length = 214
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 16/178 (8%)
Query: 169 DPENGPPQYRSRTVYEDVTPEMVRDFFWDDDSRLKWDDMLIYASTLEECPNTGTMVVQWV 228
D +G +Y+ V E +P ++ D + D D R +WD Y L E + MV W
Sbjct: 46 DQPSGLYEYKVFGVLEGCSPALLTDVYMDLDYRKQWDQ---YVKELYEKESDEQMVAYWE 102
Query: 229 RKFPFFCSDREYIIGRR----IWESGRSYYCVTKGVPYTSVPRRNKPKRVDLFYSSWYIR 284
K+PF S+R+Y+ R+ + + Y + + + P ++ RV + S
Sbjct: 103 VKYPFPLSNRDYVYTRQRRDLDVDRRKIYVVLAQSISAPQFPEKSGVIRVKQYKQSL--- 159
Query: 285 AVESRRGDGQLTACEVILFHHEDMG--IPWEIAKLGVRQGMWGAVKKFDPALRAYVKE 340
A+ES DG+ V +++ ++ G IP + + G+ +K A + Y K+
Sbjct: 160 AIES---DGK-KGSRVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMVKACQNYHKK 213
>sp|O33124|LEUD_MYCLE 3-isopropylmalate dehydratase small subunit OS=Mycobacterium leprae
(strain TN) GN=leuD PE=3 SV=1
Length = 198
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 91 CISATSDYGIQKDVPSTSNSISPCSSSQAHRRMEQSSFVTEDDLEHLCRLVEEKDGGPVW 150
+ A DYG + + S I ++ +A Q V +DD+E L +L+E+K G +
Sbjct: 80 AVWALMDYGFRVVISSRFGDIFHGNAGKAGLLAAQ---VAQDDVEFLWKLIEQKPGLEIT 136
Query: 151 IQMMDRSTPTMA---------YQAWR 167
+ + DR+ Y AWR
Sbjct: 137 VNLQDRNINAATVVLPFKIDDYTAWR 162
>sp|B8ZS11|LEUD_MYCLB 3-isopropylmalate dehydratase small subunit OS=Mycobacterium leprae
(strain Br4923) GN=leuD PE=3 SV=1
Length = 198
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 91 CISATSDYGIQKDVPSTSNSISPCSSSQAHRRMEQSSFVTEDDLEHLCRLVEEKDGGPVW 150
+ A DYG + + S I ++ +A Q V +DD+E L +L+E+K G +
Sbjct: 80 AVWALMDYGFRVVISSRFGDIFHGNAGKAGLLAAQ---VAQDDVEFLWKLIEQKPGLEIT 136
Query: 151 IQMMDRSTPTMA---------YQAWR 167
+ + DR+ Y AWR
Sbjct: 137 VNLQDRNINAATVVLPFKIDDYTAWR 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,129,145
Number of Sequences: 539616
Number of extensions: 6906810
Number of successful extensions: 15369
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15361
Number of HSP's gapped (non-prelim): 10
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)